counts of all annotation by type: count | cv_name -------+-------------------------------------- 6 | external_link 22 | ex_tools 27 | cat_act 30 | pathway 90 | m_f_g 187 | subunit_composition 237 | genome_org 416 | misc 446 | complementation 831 | EC numbers 955 | sequence 965 | name_description 1792 | warning 1868 | PomBase family or domain 3906 | mondo 5133 | PomBase gene characterisation status 10954 | biological_process 12311 | molecular_function 16466 | cellular_component 25076 | species_dist 37849 | gene_ex 47184 | PSI-MOD 57486 | PomBase gene products 89483 | fission_yeast_phenotype (24 rows) annotation counts by evidence code and cv type, sorted by cv name: ev_code | cv_name | count ---------------------------------------------------------------------------+--------------------------+------- Inferred by Curator | biological_process | 1161 Inferred from Biological aspect of Ancestor | biological_process | 88 Inferred from Direct Assay | biological_process | 724 Inferred from Electronic Annotation | biological_process | 516 Inferred from Experiment | biological_process | 243 Inferred from Expression Pattern | biological_process | 25 Inferred from Genetic Interaction | biological_process | 632 Inferred from high throughput direct assay | biological_process | 17 Inferred from Mutant Phenotype | biological_process | 3887 Inferred from Physical Interaction | biological_process | 110 Inferred from Sequence Model | biological_process | 201 Inferred from Sequence or Structural Similarity | biological_process | 584 Inferred from Sequence Orthology | biological_process | 2226 Non-traceable Author Statement | biological_process | 394 Traceable Author Statement | biological_process | 146 Inferred by Curator | cellular_component | 519 Inferred from Direct Assay | cellular_component | 5136 Inferred from Electronic Annotation | cellular_component | 1012 Inferred from Experiment | cellular_component | 224 Inferred from Genetic Interaction | cellular_component | 47 Inferred from high throughput direct assay | cellular_component | 6869 Inferred from Mutant Phenotype | cellular_component | 51 Inferred from Physical Interaction | cellular_component | 277 Inferred from Sequence Model | cellular_component | 101 Inferred from Sequence or Structural Similarity | cellular_component | 403 Inferred from Sequence Orthology | cellular_component | 1538 Non-traceable Author Statement | cellular_component | 186 Traceable Author Statement | cellular_component | 103 Non-traceable Author Statement | complementation | 1 cell growth assay evidence | fission_yeast_phenotype | 30302 Chromatin immunoprecipitation experiment | fission_yeast_phenotype | 1532 Chromatography evidence | fission_yeast_phenotype | 55 Co-immunoprecipitation experiment | fission_yeast_phenotype | 836 competitive growth assay evidence | fission_yeast_phenotype | 1429 Electrophoretic mobility shift assay data | fission_yeast_phenotype | 151 Enzyme assay data | fission_yeast_phenotype | 1775 Epitope-tagged protein immunolocalization experiment data | fission_yeast_phenotype | 34 experimental phenotypic evidence | fission_yeast_phenotype | 493 Flow cytometry data | fission_yeast_phenotype | 1133 gel electrophoresis evidence | fission_yeast_phenotype | 2253 high throughput nucleotide sequencing assay evidence | fission_yeast_phenotype | 206 Immunolocalization experiment data | fission_yeast_phenotype | 18 Microscopy | fission_yeast_phenotype | 35241 microscopy evidence used in manual assertion | fission_yeast_phenotype | 660 Northern assay evidence | fission_yeast_phenotype | 118 Other | fission_yeast_phenotype | 1715 Other direct assay | fission_yeast_phenotype | 9 Particle size and count assay | fission_yeast_phenotype | 28 Plasmid maintenance assay evidence | fission_yeast_phenotype | 77 quantitative PCR | fission_yeast_phenotype | 619 reporter gene assay evidence | fission_yeast_phenotype | 2342 sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | fission_yeast_phenotype | 22 Substance quantification | fission_yeast_phenotype | 1038 Substance quantification evidence | fission_yeast_phenotype | 1 transcript expression level evidence | fission_yeast_phenotype | 3456 Western blot assay | fission_yeast_phenotype | 3789 western blot evidence used in manual assertion | fission_yeast_phenotype | 151 experimental evidence | gene_ex | 20336 expression microarray evidence | gene_ex | 2017 fusion protein localization evidence | gene_ex | 11 immunofluorescence evidence | gene_ex | 6 in situ hybridization assay evidence | gene_ex | 14 mass spectrometry evidence | gene_ex | 13688 Northern assay evidence | gene_ex | 75 northern assay evidence used in manual assertion | gene_ex | 801 quantitative PCR | gene_ex | 88 reporter gene assay evidence | gene_ex | 144 reverse transcription polymerase chain reaction transcription evidence | gene_ex | 60 ribosome profiling evidence | gene_ex | 32 RNA protection assay evidence | gene_ex | 59 sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | gene_ex | 2 transcript expression level evidence | gene_ex | 16 Western blot evidence | gene_ex | 25 western blot evidence used in manual assertion | gene_ex | 448 Inferred from Sequence or Structural Similarity | genome_org | 13 Inferred from Sequence or Structural Similarity | m_f_g | 42 Inferred from Direct Assay | misc | 1 Inferred from Mutant Phenotype | misc | 4 Inferred from Physical Interaction | misc | 2 Inferred from Sequence or Structural Similarity | misc | 1 Inferred by Curator | molecular_function | 115 Inferred from Direct Assay | molecular_function | 1885 Inferred from Electronic Annotation | molecular_function | 1857 Inferred from Experiment | molecular_function | 421 Inferred from Genetic Interaction | molecular_function | 128 Inferred from high throughput direct assay | molecular_function | 17 Inferred from high throughput mutant phenotype | molecular_function | 1535 Inferred from Key Residues | molecular_function | 1 Inferred from Mutant Phenotype | molecular_function | 686 Inferred from Physical Interaction | molecular_function | 2263 Inferred from Sequence Model | molecular_function | 1244 Inferred from Sequence or Structural Similarity | molecular_function | 470 Inferred from Sequence Orthology | molecular_function | 1398 Non-traceable Author Statement | molecular_function | 154 Traceable Author Statement | molecular_function | 137 Inferred from Sequence or Structural Similarity | PomBase family or domain | 5 Traceable Author Statement | PomBase family or domain | 5 experimental evidence | PSI-MOD | 8141 Inferred from Direct Assay | PSI-MOD | 16541 Inferred from Sequence Model | PSI-MOD | 2 Inferred from Sequence or Structural Similarity | PSI-MOD | 101 mass spectrometry evidence | PSI-MOD | 2090 Traceable Author Statement | PSI-MOD | 1 tryptic phosphopeptide mapping assay evidence used in automatic assertion | PSI-MOD | 20248 Inferred from Direct Assay | sequence | 2 Inferred from Mutant Phenotype | sequence | 8 Inferred from Sequence or Structural Similarity | sequence | 355 Traceable Author Statement | sequence | 2 Inferred from Direct Assay | subunit_composition | 4 Inferred from Sequence or Structural Similarity | subunit_composition | 1 Inferred from Sequence or Structural Similarity | warning | 102 (111 rows) annotation counts by evidence code and cv type, sorted by count: ev_code | cv_name | count ---------------------------------------------------------------------------+--------------------------+------- Substance quantification evidence | fission_yeast_phenotype | 1 Inferred from Sequence or Structural Similarity | misc | 1 Inferred from Direct Assay | misc | 1 Inferred from Sequence or Structural Similarity | subunit_composition | 1 Traceable Author Statement | PSI-MOD | 1 Non-traceable Author Statement | complementation | 1 Inferred from Key Residues | molecular_function | 1 Inferred from Direct Assay | sequence | 2 Inferred from Sequence Model | PSI-MOD | 2 Inferred from Physical Interaction | misc | 2 Traceable Author Statement | sequence | 2 sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | gene_ex | 2 Inferred from Direct Assay | subunit_composition | 4 Inferred from Mutant Phenotype | misc | 4 Traceable Author Statement | PomBase family or domain | 5 Inferred from Sequence or Structural Similarity | PomBase family or domain | 5 immunofluorescence evidence | gene_ex | 6 Inferred from Mutant Phenotype | sequence | 8 Other direct assay | fission_yeast_phenotype | 9 fusion protein localization evidence | gene_ex | 11 Inferred from Sequence or Structural Similarity | genome_org | 13 in situ hybridization assay evidence | gene_ex | 14 transcript expression level evidence | gene_ex | 16 Inferred from high throughput direct assay | molecular_function | 17 Inferred from high throughput direct assay | biological_process | 17 Immunolocalization experiment data | fission_yeast_phenotype | 18 sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | fission_yeast_phenotype | 22 Inferred from Expression Pattern | biological_process | 25 Western blot evidence | gene_ex | 25 Particle size and count assay | fission_yeast_phenotype | 28 ribosome profiling evidence | gene_ex | 32 Epitope-tagged protein immunolocalization experiment data | fission_yeast_phenotype | 34 Inferred from Sequence or Structural Similarity | m_f_g | 42 Inferred from Genetic Interaction | cellular_component | 47 Inferred from Mutant Phenotype | cellular_component | 51 Chromatography evidence | fission_yeast_phenotype | 55 RNA protection assay evidence | gene_ex | 59 reverse transcription polymerase chain reaction transcription evidence | gene_ex | 60 Northern assay evidence | gene_ex | 75 Plasmid maintenance assay evidence | fission_yeast_phenotype | 77 Inferred from Biological aspect of Ancestor | biological_process | 88 quantitative PCR | gene_ex | 88 Inferred from Sequence or Structural Similarity | PSI-MOD | 101 Inferred from Sequence Model | cellular_component | 101 Inferred from Sequence or Structural Similarity | warning | 102 Traceable Author Statement | cellular_component | 103 Inferred from Physical Interaction | biological_process | 110 Inferred by Curator | molecular_function | 115 Northern assay evidence | fission_yeast_phenotype | 118 Inferred from Genetic Interaction | molecular_function | 128 Traceable Author Statement | molecular_function | 137 reporter gene assay evidence | gene_ex | 144 Traceable Author Statement | biological_process | 146 Electrophoretic mobility shift assay data | fission_yeast_phenotype | 151 western blot evidence used in manual assertion | fission_yeast_phenotype | 151 Non-traceable Author Statement | molecular_function | 154 Non-traceable Author Statement | cellular_component | 186 Inferred from Sequence Model | biological_process | 201 high throughput nucleotide sequencing assay evidence | fission_yeast_phenotype | 206 Inferred from Experiment | cellular_component | 224 Inferred from Experiment | biological_process | 243 Inferred from Physical Interaction | cellular_component | 277 Inferred from Sequence or Structural Similarity | sequence | 355 Non-traceable Author Statement | biological_process | 394 Inferred from Sequence or Structural Similarity | cellular_component | 403 Inferred from Experiment | molecular_function | 421 western blot evidence used in manual assertion | gene_ex | 448 Inferred from Sequence or Structural Similarity | molecular_function | 470 experimental phenotypic evidence | fission_yeast_phenotype | 493 Inferred from Electronic Annotation | biological_process | 516 Inferred by Curator | cellular_component | 519 Inferred from Sequence or Structural Similarity | biological_process | 584 quantitative PCR | fission_yeast_phenotype | 619 Inferred from Genetic Interaction | biological_process | 632 microscopy evidence used in manual assertion | fission_yeast_phenotype | 660 Inferred from Mutant Phenotype | molecular_function | 686 Inferred from Direct Assay | biological_process | 724 northern assay evidence used in manual assertion | gene_ex | 801 Co-immunoprecipitation experiment | fission_yeast_phenotype | 836 Inferred from Electronic Annotation | cellular_component | 1012 Substance quantification | fission_yeast_phenotype | 1038 Flow cytometry data | fission_yeast_phenotype | 1133 Inferred by Curator | biological_process | 1161 Inferred from Sequence Model | molecular_function | 1244 Inferred from Sequence Orthology | molecular_function | 1398 competitive growth assay evidence | fission_yeast_phenotype | 1429 Chromatin immunoprecipitation experiment | fission_yeast_phenotype | 1532 Inferred from high throughput mutant phenotype | molecular_function | 1535 Inferred from Sequence Orthology | cellular_component | 1538 Other | fission_yeast_phenotype | 1715 Enzyme assay data | fission_yeast_phenotype | 1775 Inferred from Electronic Annotation | molecular_function | 1857 Inferred from Direct Assay | molecular_function | 1885 expression microarray evidence | gene_ex | 2017 mass spectrometry evidence | PSI-MOD | 2090 Inferred from Sequence Orthology | biological_process | 2226 gel electrophoresis evidence | fission_yeast_phenotype | 2253 Inferred from Physical Interaction | molecular_function | 2263 reporter gene assay evidence | fission_yeast_phenotype | 2342 transcript expression level evidence | fission_yeast_phenotype | 3456 Western blot assay | fission_yeast_phenotype | 3789 Inferred from Mutant Phenotype | biological_process | 3887 Inferred from Direct Assay | cellular_component | 5136 Inferred from high throughput direct assay | cellular_component | 6869 experimental evidence | PSI-MOD | 8141 mass spectrometry evidence | gene_ex | 13688 Inferred from Direct Assay | PSI-MOD | 16541 tryptic phosphopeptide mapping assay evidence used in automatic assertion | PSI-MOD | 20248 experimental evidence | gene_ex | 20336 cell growth assay evidence | fission_yeast_phenotype | 30302 Microscopy | fission_yeast_phenotype | 35241 (111 rows) annotation counts by evidence code and cv type, sorted by cv evidence code: ev_code | cv_name | count ---------------------------------------------------------------------------+--------------------------+------- cell growth assay evidence | fission_yeast_phenotype | 30302 Chromatin immunoprecipitation experiment | fission_yeast_phenotype | 1532 Chromatography evidence | fission_yeast_phenotype | 55 Co-immunoprecipitation experiment | fission_yeast_phenotype | 836 competitive growth assay evidence | fission_yeast_phenotype | 1429 Electrophoretic mobility shift assay data | fission_yeast_phenotype | 151 Enzyme assay data | fission_yeast_phenotype | 1775 Epitope-tagged protein immunolocalization experiment data | fission_yeast_phenotype | 34 experimental evidence | gene_ex | 20336 experimental evidence | PSI-MOD | 8141 experimental phenotypic evidence | fission_yeast_phenotype | 493 expression microarray evidence | gene_ex | 2017 Flow cytometry data | fission_yeast_phenotype | 1133 fusion protein localization evidence | gene_ex | 11 gel electrophoresis evidence | fission_yeast_phenotype | 2253 high throughput nucleotide sequencing assay evidence | fission_yeast_phenotype | 206 immunofluorescence evidence | gene_ex | 6 Immunolocalization experiment data | fission_yeast_phenotype | 18 Inferred by Curator | biological_process | 1161 Inferred by Curator | cellular_component | 519 Inferred by Curator | molecular_function | 115 Inferred from Biological aspect of Ancestor | biological_process | 88 Inferred from Direct Assay | biological_process | 724 Inferred from Direct Assay | cellular_component | 5136 Inferred from Direct Assay | misc | 1 Inferred from Direct Assay | molecular_function | 1885 Inferred from Direct Assay | PSI-MOD | 16541 Inferred from Direct Assay | sequence | 2 Inferred from Direct Assay | subunit_composition | 4 Inferred from Electronic Annotation | biological_process | 516 Inferred from Electronic Annotation | cellular_component | 1012 Inferred from Electronic Annotation | molecular_function | 1857 Inferred from Experiment | biological_process | 243 Inferred from Experiment | cellular_component | 224 Inferred from Experiment | molecular_function | 421 Inferred from Expression Pattern | biological_process | 25 Inferred from Genetic Interaction | biological_process | 632 Inferred from Genetic Interaction | cellular_component | 47 Inferred from Genetic Interaction | molecular_function | 128 Inferred from high throughput direct assay | biological_process | 17 Inferred from high throughput direct assay | cellular_component | 6869 Inferred from high throughput direct assay | molecular_function | 17 Inferred from high throughput mutant phenotype | molecular_function | 1535 Inferred from Key Residues | molecular_function | 1 Inferred from Mutant Phenotype | biological_process | 3887 Inferred from Mutant Phenotype | cellular_component | 51 Inferred from Mutant Phenotype | misc | 4 Inferred from Mutant Phenotype | molecular_function | 686 Inferred from Mutant Phenotype | sequence | 8 Inferred from Physical Interaction | biological_process | 110 Inferred from Physical Interaction | cellular_component | 277 Inferred from Physical Interaction | misc | 2 Inferred from Physical Interaction | molecular_function | 2263 Inferred from Sequence Model | biological_process | 201 Inferred from Sequence Model | cellular_component | 101 Inferred from Sequence Model | molecular_function | 1244 Inferred from Sequence Model | PSI-MOD | 2 Inferred from Sequence or Structural Similarity | biological_process | 584 Inferred from Sequence or Structural Similarity | cellular_component | 403 Inferred from Sequence or Structural Similarity | genome_org | 13 Inferred from Sequence or Structural Similarity | m_f_g | 42 Inferred from Sequence or Structural Similarity | misc | 1 Inferred from Sequence or Structural Similarity | molecular_function | 470 Inferred from Sequence or Structural Similarity | PomBase family or domain | 5 Inferred from Sequence or Structural Similarity | PSI-MOD | 101 Inferred from Sequence or Structural Similarity | sequence | 355 Inferred from Sequence or Structural Similarity | subunit_composition | 1 Inferred from Sequence or Structural Similarity | warning | 102 Inferred from Sequence Orthology | biological_process | 2226 Inferred from Sequence Orthology | cellular_component | 1538 Inferred from Sequence Orthology | molecular_function | 1398 in situ hybridization assay evidence | gene_ex | 14 mass spectrometry evidence | gene_ex | 13688 mass spectrometry evidence | PSI-MOD | 2090 Microscopy | fission_yeast_phenotype | 35241 microscopy evidence used in manual assertion | fission_yeast_phenotype | 660 Non-traceable Author Statement | biological_process | 394 Non-traceable Author Statement | cellular_component | 186 Non-traceable Author Statement | complementation | 1 Non-traceable Author Statement | molecular_function | 154 Northern assay evidence | fission_yeast_phenotype | 118 Northern assay evidence | gene_ex | 75 northern assay evidence used in manual assertion | gene_ex | 801 Other | fission_yeast_phenotype | 1715 Other direct assay | fission_yeast_phenotype | 9 Particle size and count assay | fission_yeast_phenotype | 28 Plasmid maintenance assay evidence | fission_yeast_phenotype | 77 quantitative PCR | fission_yeast_phenotype | 619 quantitative PCR | gene_ex | 88 reporter gene assay evidence | fission_yeast_phenotype | 2342 reporter gene assay evidence | gene_ex | 144 reverse transcription polymerase chain reaction transcription evidence | gene_ex | 60 ribosome profiling evidence | gene_ex | 32 RNA protection assay evidence | gene_ex | 59 sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | fission_yeast_phenotype | 22 sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | gene_ex | 2 Substance quantification | fission_yeast_phenotype | 1038 Substance quantification evidence | fission_yeast_phenotype | 1 Traceable Author Statement | biological_process | 146 Traceable Author Statement | cellular_component | 103 Traceable Author Statement | molecular_function | 137 Traceable Author Statement | PomBase family or domain | 5 Traceable Author Statement | PSI-MOD | 1 Traceable Author Statement | sequence | 2 transcript expression level evidence | fission_yeast_phenotype | 3456 transcript expression level evidence | gene_ex | 16 tryptic phosphopeptide mapping assay evidence used in automatic assertion | PSI-MOD | 20248 Western blot assay | fission_yeast_phenotype | 3789 Western blot evidence | gene_ex | 25 western blot evidence used in manual assertion | fission_yeast_phenotype | 151 western blot evidence used in manual assertion | gene_ex | 448 (111 rows) total: count -------- 313720 (1 row) counts of annotation from Canto, by type: count | cv_name -------+------------------------------------ 1257 | PSI-MOD 2506 | molecular_function 2828 | cellular_component 3433 | biological_process 28626 | PomBase annotation extension terms 34116 | fission_yeast_phenotype (6 rows) total ------- 72766 (1 row)