counts of all annotation by type: count | cv_name -------+-------------------------------------- 6 | external_link 22 | ex_tools 27 | cat_act 29 | pathway 90 | m_f_g 187 | subunit_composition 237 | genome_org 414 | misc 446 | complementation 831 | EC numbers 955 | sequence 965 | name_description 1792 | warning 1868 | PomBase family or domain 3904 | mondo 5133 | PomBase gene characterisation status 10953 | biological_process 12355 | molecular_function 16475 | cellular_component 25080 | species_dist 37859 | gene_ex 47212 | PSI-MOD 57553 | PomBase gene products 90157 | fission_yeast_phenotype (24 rows) annotation counts by evidence code and cv type, sorted by cv name: ev_code | cv_name | count ----------------------------------------------------------------------------------+--------------------------+------- Inferred from Direct Assay | PSI-MOD | 16569 Inferred from Sequence Model | PSI-MOD | 2 Inferred from Sequence or Structural Similarity | PSI-MOD | 101 Traceable Author Statement | PSI-MOD | 1 experimental evidence | PSI-MOD | 8141 mass spectrometry evidence | PSI-MOD | 2090 tryptic phosphopeptide mapping assay evidence used in automatic assertion | PSI-MOD | 20248 Inferred from Sequence or Structural Similarity | PomBase family or domain | 5 Traceable Author Statement | PomBase family or domain | 5 Inferred by Curator | biological_process | 1167 Inferred from Biological aspect of Ancestor | biological_process | 88 Inferred from Direct Assay | biological_process | 732 Inferred from Electronic Annotation | biological_process | 524 Inferred from Experiment | biological_process | 238 Inferred from Expression Pattern | biological_process | 25 Inferred from Genetic Interaction | biological_process | 625 Inferred from Mutant Phenotype | biological_process | 3889 Inferred from Physical Interaction | biological_process | 109 Inferred from Sequence Model | biological_process | 203 Inferred from Sequence Orthology | biological_process | 2214 Inferred from Sequence or Structural Similarity | biological_process | 578 Inferred from high throughput direct assay | biological_process | 17 Non-traceable Author Statement | biological_process | 392 Traceable Author Statement | biological_process | 152 Inferred by Curator | cellular_component | 522 Inferred from Direct Assay | cellular_component | 5173 Inferred from Electronic Annotation | cellular_component | 966 Inferred from Experiment | cellular_component | 228 Inferred from Genetic Interaction | cellular_component | 47 Inferred from Mutant Phenotype | cellular_component | 51 Inferred from Physical Interaction | cellular_component | 279 Inferred from Sequence Model | cellular_component | 100 Inferred from Sequence Orthology | cellular_component | 1543 Inferred from Sequence or Structural Similarity | cellular_component | 407 Inferred from high throughput direct assay | cellular_component | 6865 Non-traceable Author Statement | cellular_component | 190 Traceable Author Statement | cellular_component | 104 Non-traceable Author Statement | complementation | 1 Chromatin immunoprecipitation experiment | fission_yeast_phenotype | 1542 Chromatography evidence | fission_yeast_phenotype | 55 Co-immunoprecipitation experiment | fission_yeast_phenotype | 865 Electrophoretic mobility shift assay data | fission_yeast_phenotype | 154 Enzyme assay data | fission_yeast_phenotype | 1780 Epitope-tagged protein immunolocalization experiment data | fission_yeast_phenotype | 34 Flow cytometry data | fission_yeast_phenotype | 1145 Immunolocalization experiment data | fission_yeast_phenotype | 18 Microscopy | fission_yeast_phenotype | 35615 Northern assay evidence | fission_yeast_phenotype | 118 Other | fission_yeast_phenotype | 1722 Other direct assay | fission_yeast_phenotype | 9 Particle size and count assay | fission_yeast_phenotype | 28 Plasmid maintenance assay evidence | fission_yeast_phenotype | 77 Substance quantification evidence | fission_yeast_phenotype | 1040 Western blot assay | fission_yeast_phenotype | 3821 cell growth assay evidence | fission_yeast_phenotype | 30447 competitive growth assay evidence | fission_yeast_phenotype | 1429 experimental phenotypic evidence | fission_yeast_phenotype | 493 gel electrophoresis evidence | fission_yeast_phenotype | 2257 high throughput nucleotide sequencing assay evidence | fission_yeast_phenotype | 206 microscopy evidence used in manual assertion | fission_yeast_phenotype | 659 quantitative PCR | fission_yeast_phenotype | 626 reporter gene assay evidence | fission_yeast_phenotype | 2383 sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | fission_yeast_phenotype | 22 transcript expression level evidence | fission_yeast_phenotype | 3461 western blot evidence used in manual assertion | fission_yeast_phenotype | 151 Northern assay evidence | gene_ex | 75 RNA protection assay evidence | gene_ex | 59 Western blot evidence | gene_ex | 25 experimental evidence | gene_ex | 20336 expression microarray evidence | gene_ex | 2017 fusion protein localization evidence | gene_ex | 11 immunofluorescence evidence | gene_ex | 6 in situ hybridization assay evidence | gene_ex | 14 mass spectrometry evidence | gene_ex | 13688 northern assay evidence used in manual assertion | gene_ex | 801 protein expression level evidence based on western blot used in manual assertion | gene_ex | 2 quantitative PCR | gene_ex | 88 quantitative polymerase chain reaction evidence used in manual assertion | gene_ex | 8 reporter gene assay evidence | gene_ex | 144 reverse transcription polymerase chain reaction transcription evidence | gene_ex | 60 ribosome profiling evidence | gene_ex | 32 sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | gene_ex | 2 transcript expression level evidence | gene_ex | 16 western blot evidence used in manual assertion | gene_ex | 448 Inferred from Sequence or Structural Similarity | genome_org | 13 Inferred from Sequence or Structural Similarity | m_f_g | 42 Inferred from Direct Assay | misc | 1 Inferred from Mutant Phenotype | misc | 4 Inferred from Physical Interaction | misc | 2 Inferred from Sequence or Structural Similarity | misc | 1 Inferred by Curator | molecular_function | 132 Inferred from Direct Assay | molecular_function | 1890 Inferred from Electronic Annotation | molecular_function | 1874 Inferred from Experiment | molecular_function | 425 Inferred from Genetic Interaction | molecular_function | 128 Inferred from Key Residues | molecular_function | 1 Inferred from Mutant Phenotype | molecular_function | 685 Inferred from Physical Interaction | molecular_function | 2269 Inferred from Sequence Model | molecular_function | 1238 Inferred from Sequence Orthology | molecular_function | 1395 Inferred from Sequence or Structural Similarity | molecular_function | 470 Inferred from high throughput direct assay | molecular_function | 17 Inferred from high throughput mutant phenotype | molecular_function | 1535 Non-traceable Author Statement | molecular_function | 153 Traceable Author Statement | molecular_function | 143 Inferred from Direct Assay | sequence | 2 Inferred from Mutant Phenotype | sequence | 8 Inferred from Sequence or Structural Similarity | sequence | 355 Traceable Author Statement | sequence | 2 Inferred from Direct Assay | subunit_composition | 4 Inferred from Sequence or Structural Similarity | subunit_composition | 1 Inferred from Sequence or Structural Similarity | warning | 102 (112 rows) annotation counts by evidence code and cv type, sorted by count: ev_code | cv_name | count ----------------------------------------------------------------------------------+--------------------------+------- Inferred from Sequence or Structural Similarity | misc | 1 Inferred from Direct Assay | misc | 1 Traceable Author Statement | PSI-MOD | 1 Inferred from Key Residues | molecular_function | 1 Inferred from Sequence or Structural Similarity | subunit_composition | 1 Non-traceable Author Statement | complementation | 1 Inferred from Direct Assay | sequence | 2 Traceable Author Statement | sequence | 2 Inferred from Sequence Model | PSI-MOD | 2 sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | gene_ex | 2 Inferred from Physical Interaction | misc | 2 protein expression level evidence based on western blot used in manual assertion | gene_ex | 2 Inferred from Direct Assay | subunit_composition | 4 Inferred from Mutant Phenotype | misc | 4 Traceable Author Statement | PomBase family or domain | 5 Inferred from Sequence or Structural Similarity | PomBase family or domain | 5 immunofluorescence evidence | gene_ex | 6 quantitative polymerase chain reaction evidence used in manual assertion | gene_ex | 8 Inferred from Mutant Phenotype | sequence | 8 Other direct assay | fission_yeast_phenotype | 9 fusion protein localization evidence | gene_ex | 11 Inferred from Sequence or Structural Similarity | genome_org | 13 in situ hybridization assay evidence | gene_ex | 14 transcript expression level evidence | gene_ex | 16 Inferred from high throughput direct assay | biological_process | 17 Inferred from high throughput direct assay | molecular_function | 17 Immunolocalization experiment data | fission_yeast_phenotype | 18 sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | fission_yeast_phenotype | 22 Western blot evidence | gene_ex | 25 Inferred from Expression Pattern | biological_process | 25 Particle size and count assay | fission_yeast_phenotype | 28 ribosome profiling evidence | gene_ex | 32 Epitope-tagged protein immunolocalization experiment data | fission_yeast_phenotype | 34 Inferred from Sequence or Structural Similarity | m_f_g | 42 Inferred from Genetic Interaction | cellular_component | 47 Inferred from Mutant Phenotype | cellular_component | 51 Chromatography evidence | fission_yeast_phenotype | 55 RNA protection assay evidence | gene_ex | 59 reverse transcription polymerase chain reaction transcription evidence | gene_ex | 60 Northern assay evidence | gene_ex | 75 Plasmid maintenance assay evidence | fission_yeast_phenotype | 77 Inferred from Biological aspect of Ancestor | biological_process | 88 quantitative PCR | gene_ex | 88 Inferred from Sequence Model | cellular_component | 100 Inferred from Sequence or Structural Similarity | PSI-MOD | 101 Inferred from Sequence or Structural Similarity | warning | 102 Traceable Author Statement | cellular_component | 104 Inferred from Physical Interaction | biological_process | 109 Northern assay evidence | fission_yeast_phenotype | 118 Inferred from Genetic Interaction | molecular_function | 128 Inferred by Curator | molecular_function | 132 Traceable Author Statement | molecular_function | 143 reporter gene assay evidence | gene_ex | 144 western blot evidence used in manual assertion | fission_yeast_phenotype | 151 Traceable Author Statement | biological_process | 152 Non-traceable Author Statement | molecular_function | 153 Electrophoretic mobility shift assay data | fission_yeast_phenotype | 154 Non-traceable Author Statement | cellular_component | 190 Inferred from Sequence Model | biological_process | 203 high throughput nucleotide sequencing assay evidence | fission_yeast_phenotype | 206 Inferred from Experiment | cellular_component | 228 Inferred from Experiment | biological_process | 238 Inferred from Physical Interaction | cellular_component | 279 Inferred from Sequence or Structural Similarity | sequence | 355 Non-traceable Author Statement | biological_process | 392 Inferred from Sequence or Structural Similarity | cellular_component | 407 Inferred from Experiment | molecular_function | 425 western blot evidence used in manual assertion | gene_ex | 448 Inferred from Sequence or Structural Similarity | molecular_function | 470 experimental phenotypic evidence | fission_yeast_phenotype | 493 Inferred by Curator | cellular_component | 522 Inferred from Electronic Annotation | biological_process | 524 Inferred from Sequence or Structural Similarity | biological_process | 578 Inferred from Genetic Interaction | biological_process | 625 quantitative PCR | fission_yeast_phenotype | 626 microscopy evidence used in manual assertion | fission_yeast_phenotype | 659 Inferred from Mutant Phenotype | molecular_function | 685 Inferred from Direct Assay | biological_process | 732 northern assay evidence used in manual assertion | gene_ex | 801 Co-immunoprecipitation experiment | fission_yeast_phenotype | 865 Inferred from Electronic Annotation | cellular_component | 966 Substance quantification evidence | fission_yeast_phenotype | 1040 Flow cytometry data | fission_yeast_phenotype | 1145 Inferred by Curator | biological_process | 1167 Inferred from Sequence Model | molecular_function | 1238 Inferred from Sequence Orthology | molecular_function | 1395 competitive growth assay evidence | fission_yeast_phenotype | 1429 Inferred from high throughput mutant phenotype | molecular_function | 1535 Chromatin immunoprecipitation experiment | fission_yeast_phenotype | 1542 Inferred from Sequence Orthology | cellular_component | 1543 Other | fission_yeast_phenotype | 1722 Enzyme assay data | fission_yeast_phenotype | 1780 Inferred from Electronic Annotation | molecular_function | 1874 Inferred from Direct Assay | molecular_function | 1890 expression microarray evidence | gene_ex | 2017 mass spectrometry evidence | PSI-MOD | 2090 Inferred from Sequence Orthology | biological_process | 2214 gel electrophoresis evidence | fission_yeast_phenotype | 2257 Inferred from Physical Interaction | molecular_function | 2269 reporter gene assay evidence | fission_yeast_phenotype | 2383 transcript expression level evidence | fission_yeast_phenotype | 3461 Western blot assay | fission_yeast_phenotype | 3821 Inferred from Mutant Phenotype | biological_process | 3889 Inferred from Direct Assay | cellular_component | 5173 Inferred from high throughput direct assay | cellular_component | 6865 experimental evidence | PSI-MOD | 8141 mass spectrometry evidence | gene_ex | 13688 Inferred from Direct Assay | PSI-MOD | 16569 tryptic phosphopeptide mapping assay evidence used in automatic assertion | PSI-MOD | 20248 experimental evidence | gene_ex | 20336 cell growth assay evidence | fission_yeast_phenotype | 30447 Microscopy | fission_yeast_phenotype | 35615 (112 rows) annotation counts by evidence code and cv type, sorted by cv evidence code: ev_code | cv_name | count ----------------------------------------------------------------------------------+--------------------------+------- Chromatin immunoprecipitation experiment | fission_yeast_phenotype | 1542 Chromatography evidence | fission_yeast_phenotype | 55 Co-immunoprecipitation experiment | fission_yeast_phenotype | 865 Electrophoretic mobility shift assay data | fission_yeast_phenotype | 154 Enzyme assay data | fission_yeast_phenotype | 1780 Epitope-tagged protein immunolocalization experiment data | fission_yeast_phenotype | 34 Flow cytometry data | fission_yeast_phenotype | 1145 Immunolocalization experiment data | fission_yeast_phenotype | 18 Inferred by Curator | biological_process | 1167 Inferred by Curator | cellular_component | 522 Inferred by Curator | molecular_function | 132 Inferred from Biological aspect of Ancestor | biological_process | 88 Inferred from Direct Assay | PSI-MOD | 16569 Inferred from Direct Assay | biological_process | 732 Inferred from Direct Assay | cellular_component | 5173 Inferred from Direct Assay | misc | 1 Inferred from Direct Assay | molecular_function | 1890 Inferred from Direct Assay | sequence | 2 Inferred from Direct Assay | subunit_composition | 4 Inferred from Electronic Annotation | biological_process | 524 Inferred from Electronic Annotation | cellular_component | 966 Inferred from Electronic Annotation | molecular_function | 1874 Inferred from Experiment | biological_process | 238 Inferred from Experiment | cellular_component | 228 Inferred from Experiment | molecular_function | 425 Inferred from Expression Pattern | biological_process | 25 Inferred from Genetic Interaction | biological_process | 625 Inferred from Genetic Interaction | cellular_component | 47 Inferred from Genetic Interaction | molecular_function | 128 Inferred from Key Residues | molecular_function | 1 Inferred from Mutant Phenotype | biological_process | 3889 Inferred from Mutant Phenotype | cellular_component | 51 Inferred from Mutant Phenotype | misc | 4 Inferred from Mutant Phenotype | molecular_function | 685 Inferred from Mutant Phenotype | sequence | 8 Inferred from Physical Interaction | biological_process | 109 Inferred from Physical Interaction | cellular_component | 279 Inferred from Physical Interaction | misc | 2 Inferred from Physical Interaction | molecular_function | 2269 Inferred from Sequence Model | PSI-MOD | 2 Inferred from Sequence Model | biological_process | 203 Inferred from Sequence Model | cellular_component | 100 Inferred from Sequence Model | molecular_function | 1238 Inferred from Sequence Orthology | biological_process | 2214 Inferred from Sequence Orthology | cellular_component | 1543 Inferred from Sequence Orthology | molecular_function | 1395 Inferred from Sequence or Structural Similarity | PSI-MOD | 101 Inferred from Sequence or Structural Similarity | PomBase family or domain | 5 Inferred from Sequence or Structural Similarity | biological_process | 578 Inferred from Sequence or Structural Similarity | cellular_component | 407 Inferred from Sequence or Structural Similarity | genome_org | 13 Inferred from Sequence or Structural Similarity | m_f_g | 42 Inferred from Sequence or Structural Similarity | misc | 1 Inferred from Sequence or Structural Similarity | molecular_function | 470 Inferred from Sequence or Structural Similarity | sequence | 355 Inferred from Sequence or Structural Similarity | subunit_composition | 1 Inferred from Sequence or Structural Similarity | warning | 102 Inferred from high throughput direct assay | biological_process | 17 Inferred from high throughput direct assay | cellular_component | 6865 Inferred from high throughput direct assay | molecular_function | 17 Inferred from high throughput mutant phenotype | molecular_function | 1535 Microscopy | fission_yeast_phenotype | 35615 Non-traceable Author Statement | biological_process | 392 Non-traceable Author Statement | cellular_component | 190 Non-traceable Author Statement | complementation | 1 Non-traceable Author Statement | molecular_function | 153 Northern assay evidence | fission_yeast_phenotype | 118 Northern assay evidence | gene_ex | 75 Other | fission_yeast_phenotype | 1722 Other direct assay | fission_yeast_phenotype | 9 Particle size and count assay | fission_yeast_phenotype | 28 Plasmid maintenance assay evidence | fission_yeast_phenotype | 77 RNA protection assay evidence | gene_ex | 59 Substance quantification evidence | fission_yeast_phenotype | 1040 Traceable Author Statement | PSI-MOD | 1 Traceable Author Statement | PomBase family or domain | 5 Traceable Author Statement | biological_process | 152 Traceable Author Statement | cellular_component | 104 Traceable Author Statement | molecular_function | 143 Traceable Author Statement | sequence | 2 Western blot assay | fission_yeast_phenotype | 3821 Western blot evidence | gene_ex | 25 cell growth assay evidence | fission_yeast_phenotype | 30447 competitive growth assay evidence | fission_yeast_phenotype | 1429 experimental evidence | PSI-MOD | 8141 experimental evidence | gene_ex | 20336 experimental phenotypic evidence | fission_yeast_phenotype | 493 expression microarray evidence | gene_ex | 2017 fusion protein localization evidence | gene_ex | 11 gel electrophoresis evidence | fission_yeast_phenotype | 2257 high throughput nucleotide sequencing assay evidence | fission_yeast_phenotype | 206 immunofluorescence evidence | gene_ex | 6 in situ hybridization assay evidence | gene_ex | 14 mass spectrometry evidence | PSI-MOD | 2090 mass spectrometry evidence | gene_ex | 13688 microscopy evidence used in manual assertion | fission_yeast_phenotype | 659 northern assay evidence used in manual assertion | gene_ex | 801 protein expression level evidence based on western blot used in manual assertion | gene_ex | 2 quantitative PCR | fission_yeast_phenotype | 626 quantitative PCR | gene_ex | 88 quantitative polymerase chain reaction evidence used in manual assertion | gene_ex | 8 reporter gene assay evidence | fission_yeast_phenotype | 2383 reporter gene assay evidence | gene_ex | 144 reverse transcription polymerase chain reaction transcription evidence | gene_ex | 60 ribosome profiling evidence | gene_ex | 32 sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | fission_yeast_phenotype | 22 sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | gene_ex | 2 transcript expression level evidence | fission_yeast_phenotype | 3461 transcript expression level evidence | gene_ex | 16 tryptic phosphopeptide mapping assay evidence used in automatic assertion | PSI-MOD | 20248 western blot evidence used in manual assertion | fission_yeast_phenotype | 151 western blot evidence used in manual assertion | gene_ex | 448 (112 rows) total: count -------- 314550 (1 row) counts of annotation from Canto, by type: count | cv_name -------+------------------------------------ 1257 | PSI-MOD 2514 | molecular_function 2834 | cellular_component 3469 | biological_process 29044 | PomBase annotation extension terms 34438 | fission_yeast_phenotype (6 rows) total ------- 73556 (1 row)