counts of all annotation by type: count | cv_name -------+-------------------------------------- 6 | external_link 22 | ex_tools 27 | cat_act 29 | pathway 90 | m_f_g 187 | subunit_composition 236 | genome_org 414 | misc 446 | complementation 831 | EC numbers 955 | sequence 967 | name_description 1793 | warning 1868 | PomBase family or domain 3896 | mondo 5134 | PomBase gene characterisation status 10933 | biological_process 12610 | molecular_function 16503 | cellular_component 25077 | species_dist 37858 | gene_ex 47220 | PSI-MOD 57684 | PomBase gene products 91405 | fission_yeast_phenotype (24 rows) annotation counts by evidence code and cv type, sorted by cv name: ev_code | cv_name | count ----------------------------------------------------------------------------------+--------------------------+------- Inferred from Direct Assay | PSI-MOD | 16577 Inferred from Mutant Phenotype | PSI-MOD | 1 Inferred from Sequence Model | PSI-MOD | 2 Inferred from Sequence or Structural Similarity | PSI-MOD | 101 Traceable Author Statement | PSI-MOD | 1 experimental evidence | PSI-MOD | 8141 mass spectrometry evidence | PSI-MOD | 2090 tryptic phosphopeptide mapping assay evidence used in automatic assertion | PSI-MOD | 20248 Inferred from Sequence or Structural Similarity | PomBase family or domain | 5 Traceable Author Statement | PomBase family or domain | 5 Inferred by Curator | biological_process | 1161 Inferred from Biological aspect of Ancestor | biological_process | 67 Inferred from Direct Assay | biological_process | 725 Inferred from Electronic Annotation | biological_process | 513 Inferred from Experiment | biological_process | 248 Inferred from Expression Pattern | biological_process | 25 Inferred from Genetic Interaction | biological_process | 621 Inferred from Mutant Phenotype | biological_process | 3911 Inferred from Physical Interaction | biological_process | 109 Inferred from Sequence Model | biological_process | 201 Inferred from Sequence Orthology | biological_process | 2215 Inferred from Sequence or Structural Similarity | biological_process | 573 Inferred from high throughput direct assay | biological_process | 17 Non-traceable Author Statement | biological_process | 394 Traceable Author Statement | biological_process | 153 Inferred by Curator | cellular_component | 524 Inferred from Direct Assay | cellular_component | 5192 Inferred from Electronic Annotation | cellular_component | 962 Inferred from Experiment | cellular_component | 241 Inferred from Genetic Interaction | cellular_component | 46 Inferred from Mutant Phenotype | cellular_component | 51 Inferred from Physical Interaction | cellular_component | 281 Inferred from Sequence Model | cellular_component | 100 Inferred from Sequence Orthology | cellular_component | 1527 Inferred from Sequence or Structural Similarity | cellular_component | 423 Inferred from high throughput direct assay | cellular_component | 6863 Non-traceable Author Statement | cellular_component | 190 Traceable Author Statement | cellular_component | 103 Non-traceable Author Statement | complementation | 1 Chromatin immunoprecipitation experiment | fission_yeast_phenotype | 1648 Chromatography evidence | fission_yeast_phenotype | 55 Co-immunoprecipitation experiment | fission_yeast_phenotype | 881 Electrophoretic mobility shift assay data | fission_yeast_phenotype | 154 Enzyme assay data | fission_yeast_phenotype | 1798 Epitope-tagged protein immunolocalization experiment data | fission_yeast_phenotype | 34 Flow cytometry data | fission_yeast_phenotype | 1151 Immunolocalization experiment data | fission_yeast_phenotype | 18 Microscopy | fission_yeast_phenotype | 35921 Northern assay evidence | fission_yeast_phenotype | 118 Other | fission_yeast_phenotype | 1736 Other direct assay | fission_yeast_phenotype | 9 Particle size and count assay | fission_yeast_phenotype | 28 Plasmid maintenance assay evidence | fission_yeast_phenotype | 77 Substance quantification evidence | fission_yeast_phenotype | 1047 Western blot assay | fission_yeast_phenotype | 3914 cell growth assay evidence | fission_yeast_phenotype | 30743 competitive growth assay evidence | fission_yeast_phenotype | 1429 experimental phenotypic evidence | fission_yeast_phenotype | 493 gel electrophoresis evidence | fission_yeast_phenotype | 2282 high throughput nucleotide sequencing assay evidence | fission_yeast_phenotype | 206 microscopy evidence used in manual assertion | fission_yeast_phenotype | 659 quantitative PCR | fission_yeast_phenotype | 691 reporter gene assay evidence | fission_yeast_phenotype | 2620 sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | fission_yeast_phenotype | 22 transcript expression level evidence | fission_yeast_phenotype | 3520 western blot evidence used in manual assertion | fission_yeast_phenotype | 151 Northern assay evidence | gene_ex | 75 RNA protection assay evidence | gene_ex | 59 Western blot evidence | gene_ex | 25 experimental evidence | gene_ex | 20332 expression microarray evidence | gene_ex | 2017 fusion protein localization evidence | gene_ex | 11 immunofluorescence evidence | gene_ex | 6 in situ hybridization assay evidence | gene_ex | 14 mass spectrometry evidence | gene_ex | 13688 northern assay evidence used in manual assertion | gene_ex | 802 protein expression level evidence based on western blot used in manual assertion | gene_ex | 2 quantitative PCR | gene_ex | 88 quantitative polymerase chain reaction evidence used in manual assertion | gene_ex | 8 reporter gene assay evidence | gene_ex | 144 reverse transcription polymerase chain reaction transcription evidence | gene_ex | 60 ribosome profiling evidence | gene_ex | 32 sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | gene_ex | 2 transcript expression level evidence | gene_ex | 16 western blot evidence used in manual assertion | gene_ex | 450 Inferred from Sequence or Structural Similarity | genome_org | 13 Inferred from Sequence or Structural Similarity | m_f_g | 42 Inferred from Direct Assay | misc | 1 Inferred from Mutant Phenotype | misc | 4 Inferred from Physical Interaction | misc | 2 Inferred from Sequence or Structural Similarity | misc | 1 Inferred by Curator | molecular_function | 131 Inferred from Direct Assay | molecular_function | 1900 Inferred from Electronic Annotation | molecular_function | 1874 Inferred from Experiment | molecular_function | 434 Inferred from Genetic Interaction | molecular_function | 128 Inferred from Key Residues | molecular_function | 1 Inferred from Mutant Phenotype | molecular_function | 696 Inferred from Physical Interaction | molecular_function | 2505 Inferred from Sequence Model | molecular_function | 1244 Inferred from Sequence Orthology | molecular_function | 1389 Inferred from Sequence or Structural Similarity | molecular_function | 468 Inferred from high throughput direct assay | molecular_function | 17 Inferred from high throughput mutant phenotype | molecular_function | 1535 Non-traceable Author Statement | molecular_function | 141 Traceable Author Statement | molecular_function | 147 Inferred from Direct Assay | sequence | 2 Inferred from Mutant Phenotype | sequence | 8 Inferred from Sequence or Structural Similarity | sequence | 355 Traceable Author Statement | sequence | 2 Inferred from Direct Assay | subunit_composition | 4 Inferred from Sequence or Structural Similarity | subunit_composition | 1 Inferred from Sequence or Structural Similarity | warning | 101 (113 rows) annotation counts by evidence code and cv type, sorted by count: ev_code | cv_name | count ----------------------------------------------------------------------------------+--------------------------+------- Inferred from Direct Assay | misc | 1 Inferred from Sequence or Structural Similarity | subunit_composition | 1 Inferred from Sequence or Structural Similarity | misc | 1 Traceable Author Statement | PSI-MOD | 1 Non-traceable Author Statement | complementation | 1 Inferred from Key Residues | molecular_function | 1 Inferred from Mutant Phenotype | PSI-MOD | 1 Inferred from Direct Assay | sequence | 2 sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | gene_ex | 2 protein expression level evidence based on western blot used in manual assertion | gene_ex | 2 Traceable Author Statement | sequence | 2 Inferred from Sequence Model | PSI-MOD | 2 Inferred from Physical Interaction | misc | 2 Inferred from Direct Assay | subunit_composition | 4 Inferred from Mutant Phenotype | misc | 4 Traceable Author Statement | PomBase family or domain | 5 Inferred from Sequence or Structural Similarity | PomBase family or domain | 5 immunofluorescence evidence | gene_ex | 6 quantitative polymerase chain reaction evidence used in manual assertion | gene_ex | 8 Inferred from Mutant Phenotype | sequence | 8 Other direct assay | fission_yeast_phenotype | 9 fusion protein localization evidence | gene_ex | 11 Inferred from Sequence or Structural Similarity | genome_org | 13 in situ hybridization assay evidence | gene_ex | 14 transcript expression level evidence | gene_ex | 16 Inferred from high throughput direct assay | biological_process | 17 Inferred from high throughput direct assay | molecular_function | 17 Immunolocalization experiment data | fission_yeast_phenotype | 18 sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | fission_yeast_phenotype | 22 Inferred from Expression Pattern | biological_process | 25 Western blot evidence | gene_ex | 25 Particle size and count assay | fission_yeast_phenotype | 28 ribosome profiling evidence | gene_ex | 32 Epitope-tagged protein immunolocalization experiment data | fission_yeast_phenotype | 34 Inferred from Sequence or Structural Similarity | m_f_g | 42 Inferred from Genetic Interaction | cellular_component | 46 Inferred from Mutant Phenotype | cellular_component | 51 Chromatography evidence | fission_yeast_phenotype | 55 RNA protection assay evidence | gene_ex | 59 reverse transcription polymerase chain reaction transcription evidence | gene_ex | 60 Inferred from Biological aspect of Ancestor | biological_process | 67 Northern assay evidence | gene_ex | 75 Plasmid maintenance assay evidence | fission_yeast_phenotype | 77 quantitative PCR | gene_ex | 88 Inferred from Sequence Model | cellular_component | 100 Inferred from Sequence or Structural Similarity | PSI-MOD | 101 Inferred from Sequence or Structural Similarity | warning | 101 Traceable Author Statement | cellular_component | 103 Inferred from Physical Interaction | biological_process | 109 Northern assay evidence | fission_yeast_phenotype | 118 Inferred from Genetic Interaction | molecular_function | 128 Inferred by Curator | molecular_function | 131 Non-traceable Author Statement | molecular_function | 141 reporter gene assay evidence | gene_ex | 144 Traceable Author Statement | molecular_function | 147 western blot evidence used in manual assertion | fission_yeast_phenotype | 151 Traceable Author Statement | biological_process | 153 Electrophoretic mobility shift assay data | fission_yeast_phenotype | 154 Non-traceable Author Statement | cellular_component | 190 Inferred from Sequence Model | biological_process | 201 high throughput nucleotide sequencing assay evidence | fission_yeast_phenotype | 206 Inferred from Experiment | cellular_component | 241 Inferred from Experiment | biological_process | 248 Inferred from Physical Interaction | cellular_component | 281 Inferred from Sequence or Structural Similarity | sequence | 355 Non-traceable Author Statement | biological_process | 394 Inferred from Sequence or Structural Similarity | cellular_component | 423 Inferred from Experiment | molecular_function | 434 western blot evidence used in manual assertion | gene_ex | 450 Inferred from Sequence or Structural Similarity | molecular_function | 468 experimental phenotypic evidence | fission_yeast_phenotype | 493 Inferred from Electronic Annotation | biological_process | 513 Inferred by Curator | cellular_component | 524 Inferred from Sequence or Structural Similarity | biological_process | 573 Inferred from Genetic Interaction | biological_process | 621 microscopy evidence used in manual assertion | fission_yeast_phenotype | 659 quantitative PCR | fission_yeast_phenotype | 691 Inferred from Mutant Phenotype | molecular_function | 696 Inferred from Direct Assay | biological_process | 725 northern assay evidence used in manual assertion | gene_ex | 802 Co-immunoprecipitation experiment | fission_yeast_phenotype | 881 Inferred from Electronic Annotation | cellular_component | 962 Substance quantification evidence | fission_yeast_phenotype | 1047 Flow cytometry data | fission_yeast_phenotype | 1151 Inferred by Curator | biological_process | 1161 Inferred from Sequence Model | molecular_function | 1244 Inferred from Sequence Orthology | molecular_function | 1389 competitive growth assay evidence | fission_yeast_phenotype | 1429 Inferred from Sequence Orthology | cellular_component | 1527 Inferred from high throughput mutant phenotype | molecular_function | 1535 Chromatin immunoprecipitation experiment | fission_yeast_phenotype | 1648 Other | fission_yeast_phenotype | 1736 Enzyme assay data | fission_yeast_phenotype | 1798 Inferred from Electronic Annotation | molecular_function | 1874 Inferred from Direct Assay | molecular_function | 1900 expression microarray evidence | gene_ex | 2017 mass spectrometry evidence | PSI-MOD | 2090 Inferred from Sequence Orthology | biological_process | 2215 gel electrophoresis evidence | fission_yeast_phenotype | 2282 Inferred from Physical Interaction | molecular_function | 2505 reporter gene assay evidence | fission_yeast_phenotype | 2620 transcript expression level evidence | fission_yeast_phenotype | 3520 Inferred from Mutant Phenotype | biological_process | 3911 Western blot assay | fission_yeast_phenotype | 3914 Inferred from Direct Assay | cellular_component | 5192 Inferred from high throughput direct assay | cellular_component | 6863 experimental evidence | PSI-MOD | 8141 mass spectrometry evidence | gene_ex | 13688 Inferred from Direct Assay | PSI-MOD | 16577 tryptic phosphopeptide mapping assay evidence used in automatic assertion | PSI-MOD | 20248 experimental evidence | gene_ex | 20332 cell growth assay evidence | fission_yeast_phenotype | 30743 Microscopy | fission_yeast_phenotype | 35921 (113 rows) annotation counts by evidence code and cv type, sorted by cv evidence code: ev_code | cv_name | count ----------------------------------------------------------------------------------+--------------------------+------- Chromatin immunoprecipitation experiment | fission_yeast_phenotype | 1648 Chromatography evidence | fission_yeast_phenotype | 55 Co-immunoprecipitation experiment | fission_yeast_phenotype | 881 Electrophoretic mobility shift assay data | fission_yeast_phenotype | 154 Enzyme assay data | fission_yeast_phenotype | 1798 Epitope-tagged protein immunolocalization experiment data | fission_yeast_phenotype | 34 Flow cytometry data | fission_yeast_phenotype | 1151 Immunolocalization experiment data | fission_yeast_phenotype | 18 Inferred by Curator | biological_process | 1161 Inferred by Curator | cellular_component | 524 Inferred by Curator | molecular_function | 131 Inferred from Biological aspect of Ancestor | biological_process | 67 Inferred from Direct Assay | PSI-MOD | 16577 Inferred from Direct Assay | biological_process | 725 Inferred from Direct Assay | cellular_component | 5192 Inferred from Direct Assay | misc | 1 Inferred from Direct Assay | molecular_function | 1900 Inferred from Direct Assay | sequence | 2 Inferred from Direct Assay | subunit_composition | 4 Inferred from Electronic Annotation | biological_process | 513 Inferred from Electronic Annotation | cellular_component | 962 Inferred from Electronic Annotation | molecular_function | 1874 Inferred from Experiment | biological_process | 248 Inferred from Experiment | cellular_component | 241 Inferred from Experiment | molecular_function | 434 Inferred from Expression Pattern | biological_process | 25 Inferred from Genetic Interaction | biological_process | 621 Inferred from Genetic Interaction | cellular_component | 46 Inferred from Genetic Interaction | molecular_function | 128 Inferred from Key Residues | molecular_function | 1 Inferred from Mutant Phenotype | PSI-MOD | 1 Inferred from Mutant Phenotype | biological_process | 3911 Inferred from Mutant Phenotype | cellular_component | 51 Inferred from Mutant Phenotype | misc | 4 Inferred from Mutant Phenotype | molecular_function | 696 Inferred from Mutant Phenotype | sequence | 8 Inferred from Physical Interaction | biological_process | 109 Inferred from Physical Interaction | cellular_component | 281 Inferred from Physical Interaction | misc | 2 Inferred from Physical Interaction | molecular_function | 2505 Inferred from Sequence Model | PSI-MOD | 2 Inferred from Sequence Model | biological_process | 201 Inferred from Sequence Model | cellular_component | 100 Inferred from Sequence Model | molecular_function | 1244 Inferred from Sequence Orthology | biological_process | 2215 Inferred from Sequence Orthology | cellular_component | 1527 Inferred from Sequence Orthology | molecular_function | 1389 Inferred from Sequence or Structural Similarity | PSI-MOD | 101 Inferred from Sequence or Structural Similarity | PomBase family or domain | 5 Inferred from Sequence or Structural Similarity | biological_process | 573 Inferred from Sequence or Structural Similarity | cellular_component | 423 Inferred from Sequence or Structural Similarity | genome_org | 13 Inferred from Sequence or Structural Similarity | m_f_g | 42 Inferred from Sequence or Structural Similarity | misc | 1 Inferred from Sequence or Structural Similarity | molecular_function | 468 Inferred from Sequence or Structural Similarity | sequence | 355 Inferred from Sequence or Structural Similarity | subunit_composition | 1 Inferred from Sequence or Structural Similarity | warning | 101 Inferred from high throughput direct assay | biological_process | 17 Inferred from high throughput direct assay | cellular_component | 6863 Inferred from high throughput direct assay | molecular_function | 17 Inferred from high throughput mutant phenotype | molecular_function | 1535 Microscopy | fission_yeast_phenotype | 35921 Non-traceable Author Statement | biological_process | 394 Non-traceable Author Statement | cellular_component | 190 Non-traceable Author Statement | complementation | 1 Non-traceable Author Statement | molecular_function | 141 Northern assay evidence | fission_yeast_phenotype | 118 Northern assay evidence | gene_ex | 75 Other | fission_yeast_phenotype | 1736 Other direct assay | fission_yeast_phenotype | 9 Particle size and count assay | fission_yeast_phenotype | 28 Plasmid maintenance assay evidence | fission_yeast_phenotype | 77 RNA protection assay evidence | gene_ex | 59 Substance quantification evidence | fission_yeast_phenotype | 1047 Traceable Author Statement | PSI-MOD | 1 Traceable Author Statement | PomBase family or domain | 5 Traceable Author Statement | biological_process | 153 Traceable Author Statement | cellular_component | 103 Traceable Author Statement | molecular_function | 147 Traceable Author Statement | sequence | 2 Western blot assay | fission_yeast_phenotype | 3914 Western blot evidence | gene_ex | 25 cell growth assay evidence | fission_yeast_phenotype | 30743 competitive growth assay evidence | fission_yeast_phenotype | 1429 experimental evidence | PSI-MOD | 8141 experimental evidence | gene_ex | 20332 experimental phenotypic evidence | fission_yeast_phenotype | 493 expression microarray evidence | gene_ex | 2017 fusion protein localization evidence | gene_ex | 11 gel electrophoresis evidence | fission_yeast_phenotype | 2282 high throughput nucleotide sequencing assay evidence | fission_yeast_phenotype | 206 immunofluorescence evidence | gene_ex | 6 in situ hybridization assay evidence | gene_ex | 14 mass spectrometry evidence | PSI-MOD | 2090 mass spectrometry evidence | gene_ex | 13688 microscopy evidence used in manual assertion | fission_yeast_phenotype | 659 northern assay evidence used in manual assertion | gene_ex | 802 protein expression level evidence based on western blot used in manual assertion | gene_ex | 2 quantitative PCR | fission_yeast_phenotype | 691 quantitative PCR | gene_ex | 88 quantitative polymerase chain reaction evidence used in manual assertion | gene_ex | 8 reporter gene assay evidence | fission_yeast_phenotype | 2620 reporter gene assay evidence | gene_ex | 144 reverse transcription polymerase chain reaction transcription evidence | gene_ex | 60 ribosome profiling evidence | gene_ex | 32 sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | fission_yeast_phenotype | 22 sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | gene_ex | 2 transcript expression level evidence | fission_yeast_phenotype | 3520 transcript expression level evidence | gene_ex | 16 tryptic phosphopeptide mapping assay evidence used in automatic assertion | PSI-MOD | 20248 western blot evidence used in manual assertion | fission_yeast_phenotype | 151 western blot evidence used in manual assertion | gene_ex | 450 (113 rows) total: count -------- 316191 (1 row) counts of annotation from Canto, by type: count | cv_name -------+------------------------------------ 1257 | PSI-MOD 2543 | molecular_function 2873 | cellular_component 3506 | biological_process 29684 | PomBase annotation extension terms 34924 | fission_yeast_phenotype (6 rows) total ------- 74787 (1 row)