counts of all annotation by type:
count | cv_name
-------+--------------------------------------
6 | external_link
22 | ex_tools
27 | cat_act
29 | pathway
90 | m_f_g
187 | subunit_composition
236 | genome_org
414 | misc
446 | complementation
831 | EC numbers
955 | sequence
968 | name_description
1793 | warning
1868 | PomBase family or domain
3894 | mondo
5134 | PomBase gene characterisation status
12463 | biological_process
13531 | molecular_function
17525 | cellular_component
25077 | species_dist
37855 | gene_ex
47239 | PSI-MOD
56004 | PomBase gene products
91870 | fission_yeast_phenotype
(24 rows)
annotation counts by evidence code and cv type, sorted by cv name:
ev_code | cv_name | count
----------------------------------------------------------------------------------+--------------------------+-------
Inferred from Direct Assay | PSI-MOD | 16595
Inferred from Mutant Phenotype | PSI-MOD | 1
Inferred from Sequence Model | PSI-MOD | 2
Inferred from Sequence or Structural Similarity | PSI-MOD | 101
Traceable Author Statement | PSI-MOD | 1
experimental evidence | PSI-MOD | 8141
mass spectrometry evidence | PSI-MOD | 2090
tryptic phosphopeptide mapping assay evidence used in automatic assertion | PSI-MOD | 20249
Inferred from Sequence or Structural Similarity | PomBase family or domain | 5
Traceable Author Statement | PomBase family or domain | 5
Inferred by Curator | biological_process | 1134
Inferred from Biological aspect of Ancestor | biological_process | 1876
Inferred from Direct Assay | biological_process | 733
Inferred from Electronic Annotation | biological_process | 464
Inferred from Experiment | biological_process | 255
Inferred from Expression Pattern | biological_process | 25
Inferred from Genetic Interaction | biological_process | 624
Inferred from Mutant Phenotype | biological_process | 3906
Inferred from Physical Interaction | biological_process | 109
Inferred from Sequence Model | biological_process | 186
Inferred from Sequence Orthology | biological_process | 2072
Inferred from Sequence or Structural Similarity | biological_process | 557
Inferred from high throughput direct assay | biological_process | 17
Non-traceable Author Statement | biological_process | 356
Traceable Author Statement | biological_process | 149
Inferred by Curator | cellular_component | 521
Inferred from Biological aspect of Ancestor | cellular_component | 1189
Inferred from Direct Assay | cellular_component | 5202
Inferred from Electronic Annotation | cellular_component | 886
Inferred from Experiment | cellular_component | 241
Inferred from Genetic Interaction | cellular_component | 46
Inferred from Mutant Phenotype | cellular_component | 51
Inferred from Physical Interaction | cellular_component | 281
Inferred from Sequence Model | cellular_component | 92
Inferred from Sequence Orthology | cellular_component | 1475
Inferred from Sequence or Structural Similarity | cellular_component | 401
Inferred from high throughput direct assay | cellular_component | 6863
Non-traceable Author Statement | cellular_component | 174
Traceable Author Statement | cellular_component | 103
Non-traceable Author Statement | complementation | 1
Chromatin immunoprecipitation experiment | fission_yeast_phenotype | 1652
Chromatography evidence | fission_yeast_phenotype | 55
Co-immunoprecipitation experiment | fission_yeast_phenotype | 922
Electrophoretic mobility shift assay data | fission_yeast_phenotype | 154
Enzyme assay data | fission_yeast_phenotype | 1813
Epitope-tagged protein immunolocalization experiment data | fission_yeast_phenotype | 45
Flow cytometry data | fission_yeast_phenotype | 1155
Immunolocalization experiment data | fission_yeast_phenotype | 18
Microscopy | fission_yeast_phenotype | 36029
Northern assay evidence | fission_yeast_phenotype | 118
Other | fission_yeast_phenotype | 1760
Other direct assay | fission_yeast_phenotype | 9
Particle size and count assay | fission_yeast_phenotype | 28
Plasmid maintenance assay evidence | fission_yeast_phenotype | 77
Substance quantification evidence | fission_yeast_phenotype | 1065
Western blot assay | fission_yeast_phenotype | 3967
cell growth assay evidence | fission_yeast_phenotype | 30863
competitive growth assay evidence | fission_yeast_phenotype | 1429
experimental phenotypic evidence | fission_yeast_phenotype | 493
gel electrophoresis evidence | fission_yeast_phenotype | 2299
high throughput nucleotide sequencing assay evidence | fission_yeast_phenotype | 206
microscopy evidence used in manual assertion | fission_yeast_phenotype | 659
quantitative PCR | fission_yeast_phenotype | 716
reporter gene assay evidence | fission_yeast_phenotype | 2644
sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | fission_yeast_phenotype | 22
transcript expression level evidence | fission_yeast_phenotype | 3521
western blot evidence used in manual assertion | fission_yeast_phenotype | 151
Northern assay evidence | gene_ex | 75
RNA protection assay evidence | gene_ex | 59
Western blot evidence | gene_ex | 25
experimental evidence | gene_ex | 20329
expression microarray evidence | gene_ex | 2017
fusion protein localization evidence | gene_ex | 11
immunofluorescence evidence | gene_ex | 6
in situ hybridization assay evidence | gene_ex | 14
mass spectrometry evidence | gene_ex | 13688
northern assay evidence used in manual assertion | gene_ex | 802
protein expression level evidence based on western blot used in manual assertion | gene_ex | 2
quantitative PCR | gene_ex | 88
quantitative polymerase chain reaction evidence used in manual assertion | gene_ex | 8
reporter gene assay evidence | gene_ex | 144
reverse transcription polymerase chain reaction transcription evidence | gene_ex | 60
ribosome profiling evidence | gene_ex | 32
sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | gene_ex | 2
transcript expression level evidence | gene_ex | 16
western blot evidence used in manual assertion | gene_ex | 450
Inferred from Sequence or Structural Similarity | genome_org | 13
Inferred from Sequence or Structural Similarity | m_f_g | 42
Inferred from Direct Assay | misc | 1
Inferred from Mutant Phenotype | misc | 4
Inferred from Physical Interaction | misc | 2
Inferred from Sequence or Structural Similarity | misc | 1
Inferred by Curator | molecular_function | 133
Inferred from Biological aspect of Ancestor | molecular_function | 1073
Inferred from Direct Assay | molecular_function | 1904
Inferred from Electronic Annotation | molecular_function | 1842
Inferred from Experiment | molecular_function | 433
Inferred from Genetic Interaction | molecular_function | 123
Inferred from Key Residues | molecular_function | 1
Inferred from Mutant Phenotype | molecular_function | 693
Inferred from Physical Interaction | molecular_function | 2514
Inferred from Sequence Model | molecular_function | 1193
Inferred from Sequence Orthology | molecular_function | 1335
Inferred from Sequence or Structural Similarity | molecular_function | 463
Inferred from high throughput direct assay | molecular_function | 17
Inferred from high throughput mutant phenotype | molecular_function | 1535
Non-traceable Author Statement | molecular_function | 133
Traceable Author Statement | molecular_function | 139
Inferred from Direct Assay | sequence | 2
Inferred from Mutant Phenotype | sequence | 8
Inferred from Sequence or Structural Similarity | sequence | 355
Traceable Author Statement | sequence | 2
Inferred from Direct Assay | subunit_composition | 4
Inferred from Sequence or Structural Similarity | subunit_composition | 1
Inferred from Sequence or Structural Similarity | warning | 101
(115 rows)
annotation counts by evidence code and cv type, sorted by count:
ev_code | cv_name | count
----------------------------------------------------------------------------------+--------------------------+-------
Inferred from Direct Assay | misc | 1
Inferred from Sequence or Structural Similarity | subunit_composition | 1
Inferred from Sequence or Structural Similarity | misc | 1
Traceable Author Statement | PSI-MOD | 1
Non-traceable Author Statement | complementation | 1
Inferred from Key Residues | molecular_function | 1
Inferred from Mutant Phenotype | PSI-MOD | 1
Inferred from Direct Assay | sequence | 2
sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | gene_ex | 2
protein expression level evidence based on western blot used in manual assertion | gene_ex | 2
Traceable Author Statement | sequence | 2
Inferred from Sequence Model | PSI-MOD | 2
Inferred from Physical Interaction | misc | 2
Inferred from Direct Assay | subunit_composition | 4
Inferred from Mutant Phenotype | misc | 4
Traceable Author Statement | PomBase family or domain | 5
Inferred from Sequence or Structural Similarity | PomBase family or domain | 5
immunofluorescence evidence | gene_ex | 6
quantitative polymerase chain reaction evidence used in manual assertion | gene_ex | 8
Inferred from Mutant Phenotype | sequence | 8
Other direct assay | fission_yeast_phenotype | 9
fusion protein localization evidence | gene_ex | 11
Inferred from Sequence or Structural Similarity | genome_org | 13
in situ hybridization assay evidence | gene_ex | 14
transcript expression level evidence | gene_ex | 16
Inferred from high throughput direct assay | biological_process | 17
Inferred from high throughput direct assay | molecular_function | 17
Immunolocalization experiment data | fission_yeast_phenotype | 18
sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | fission_yeast_phenotype | 22
Inferred from Expression Pattern | biological_process | 25
Western blot evidence | gene_ex | 25
Particle size and count assay | fission_yeast_phenotype | 28
ribosome profiling evidence | gene_ex | 32
Inferred from Sequence or Structural Similarity | m_f_g | 42
Epitope-tagged protein immunolocalization experiment data | fission_yeast_phenotype | 45
Inferred from Genetic Interaction | cellular_component | 46
Inferred from Mutant Phenotype | cellular_component | 51
Chromatography evidence | fission_yeast_phenotype | 55
RNA protection assay evidence | gene_ex | 59
reverse transcription polymerase chain reaction transcription evidence | gene_ex | 60
Northern assay evidence | gene_ex | 75
Plasmid maintenance assay evidence | fission_yeast_phenotype | 77
quantitative PCR | gene_ex | 88
Inferred from Sequence Model | cellular_component | 92
Inferred from Sequence or Structural Similarity | warning | 101
Inferred from Sequence or Structural Similarity | PSI-MOD | 101
Traceable Author Statement | cellular_component | 103
Inferred from Physical Interaction | biological_process | 109
Northern assay evidence | fission_yeast_phenotype | 118
Inferred from Genetic Interaction | molecular_function | 123
Non-traceable Author Statement | molecular_function | 133
Inferred by Curator | molecular_function | 133
Traceable Author Statement | molecular_function | 139
reporter gene assay evidence | gene_ex | 144
Traceable Author Statement | biological_process | 149
western blot evidence used in manual assertion | fission_yeast_phenotype | 151
Electrophoretic mobility shift assay data | fission_yeast_phenotype | 154
Non-traceable Author Statement | cellular_component | 174
Inferred from Sequence Model | biological_process | 186
high throughput nucleotide sequencing assay evidence | fission_yeast_phenotype | 206
Inferred from Experiment | cellular_component | 241
Inferred from Experiment | biological_process | 255
Inferred from Physical Interaction | cellular_component | 281
Inferred from Sequence or Structural Similarity | sequence | 355
Non-traceable Author Statement | biological_process | 356
Inferred from Sequence or Structural Similarity | cellular_component | 401
Inferred from Experiment | molecular_function | 433
western blot evidence used in manual assertion | gene_ex | 450
Inferred from Sequence or Structural Similarity | molecular_function | 463
Inferred from Electronic Annotation | biological_process | 464
experimental phenotypic evidence | fission_yeast_phenotype | 493
Inferred by Curator | cellular_component | 521
Inferred from Sequence or Structural Similarity | biological_process | 557
Inferred from Genetic Interaction | biological_process | 624
microscopy evidence used in manual assertion | fission_yeast_phenotype | 659
Inferred from Mutant Phenotype | molecular_function | 693
quantitative PCR | fission_yeast_phenotype | 716
Inferred from Direct Assay | biological_process | 733
northern assay evidence used in manual assertion | gene_ex | 802
Inferred from Electronic Annotation | cellular_component | 886
Co-immunoprecipitation experiment | fission_yeast_phenotype | 922
Substance quantification evidence | fission_yeast_phenotype | 1065
Inferred from Biological aspect of Ancestor | molecular_function | 1073
Inferred by Curator | biological_process | 1134
Flow cytometry data | fission_yeast_phenotype | 1155
Inferred from Biological aspect of Ancestor | cellular_component | 1189
Inferred from Sequence Model | molecular_function | 1193
Inferred from Sequence Orthology | molecular_function | 1335
competitive growth assay evidence | fission_yeast_phenotype | 1429
Inferred from Sequence Orthology | cellular_component | 1475
Inferred from high throughput mutant phenotype | molecular_function | 1535
Chromatin immunoprecipitation experiment | fission_yeast_phenotype | 1652
Other | fission_yeast_phenotype | 1760
Enzyme assay data | fission_yeast_phenotype | 1813
Inferred from Electronic Annotation | molecular_function | 1842
Inferred from Biological aspect of Ancestor | biological_process | 1876
Inferred from Direct Assay | molecular_function | 1904
expression microarray evidence | gene_ex | 2017
Inferred from Sequence Orthology | biological_process | 2072
mass spectrometry evidence | PSI-MOD | 2090
gel electrophoresis evidence | fission_yeast_phenotype | 2299
Inferred from Physical Interaction | molecular_function | 2514
reporter gene assay evidence | fission_yeast_phenotype | 2644
transcript expression level evidence | fission_yeast_phenotype | 3521
Inferred from Mutant Phenotype | biological_process | 3906
Western blot assay | fission_yeast_phenotype | 3967
Inferred from Direct Assay | cellular_component | 5202
Inferred from high throughput direct assay | cellular_component | 6863
experimental evidence | PSI-MOD | 8141
mass spectrometry evidence | gene_ex | 13688
Inferred from Direct Assay | PSI-MOD | 16595
tryptic phosphopeptide mapping assay evidence used in automatic assertion | PSI-MOD | 20249
experimental evidence | gene_ex | 20329
cell growth assay evidence | fission_yeast_phenotype | 30863
Microscopy | fission_yeast_phenotype | 36029
(115 rows)
annotation counts by evidence code and cv type, sorted by cv evidence code:
ev_code | cv_name | count
----------------------------------------------------------------------------------+--------------------------+-------
Chromatin immunoprecipitation experiment | fission_yeast_phenotype | 1652
Chromatography evidence | fission_yeast_phenotype | 55
Co-immunoprecipitation experiment | fission_yeast_phenotype | 922
Electrophoretic mobility shift assay data | fission_yeast_phenotype | 154
Enzyme assay data | fission_yeast_phenotype | 1813
Epitope-tagged protein immunolocalization experiment data | fission_yeast_phenotype | 45
Flow cytometry data | fission_yeast_phenotype | 1155
Immunolocalization experiment data | fission_yeast_phenotype | 18
Inferred by Curator | biological_process | 1134
Inferred by Curator | cellular_component | 521
Inferred by Curator | molecular_function | 133
Inferred from Biological aspect of Ancestor | biological_process | 1876
Inferred from Biological aspect of Ancestor | cellular_component | 1189
Inferred from Biological aspect of Ancestor | molecular_function | 1073
Inferred from Direct Assay | PSI-MOD | 16595
Inferred from Direct Assay | biological_process | 733
Inferred from Direct Assay | cellular_component | 5202
Inferred from Direct Assay | misc | 1
Inferred from Direct Assay | molecular_function | 1904
Inferred from Direct Assay | sequence | 2
Inferred from Direct Assay | subunit_composition | 4
Inferred from Electronic Annotation | biological_process | 464
Inferred from Electronic Annotation | cellular_component | 886
Inferred from Electronic Annotation | molecular_function | 1842
Inferred from Experiment | biological_process | 255
Inferred from Experiment | cellular_component | 241
Inferred from Experiment | molecular_function | 433
Inferred from Expression Pattern | biological_process | 25
Inferred from Genetic Interaction | biological_process | 624
Inferred from Genetic Interaction | cellular_component | 46
Inferred from Genetic Interaction | molecular_function | 123
Inferred from Key Residues | molecular_function | 1
Inferred from Mutant Phenotype | PSI-MOD | 1
Inferred from Mutant Phenotype | biological_process | 3906
Inferred from Mutant Phenotype | cellular_component | 51
Inferred from Mutant Phenotype | misc | 4
Inferred from Mutant Phenotype | molecular_function | 693
Inferred from Mutant Phenotype | sequence | 8
Inferred from Physical Interaction | biological_process | 109
Inferred from Physical Interaction | cellular_component | 281
Inferred from Physical Interaction | misc | 2
Inferred from Physical Interaction | molecular_function | 2514
Inferred from Sequence Model | PSI-MOD | 2
Inferred from Sequence Model | biological_process | 186
Inferred from Sequence Model | cellular_component | 92
Inferred from Sequence Model | molecular_function | 1193
Inferred from Sequence Orthology | biological_process | 2072
Inferred from Sequence Orthology | cellular_component | 1475
Inferred from Sequence Orthology | molecular_function | 1335
Inferred from Sequence or Structural Similarity | PSI-MOD | 101
Inferred from Sequence or Structural Similarity | PomBase family or domain | 5
Inferred from Sequence or Structural Similarity | biological_process | 557
Inferred from Sequence or Structural Similarity | cellular_component | 401
Inferred from Sequence or Structural Similarity | genome_org | 13
Inferred from Sequence or Structural Similarity | m_f_g | 42
Inferred from Sequence or Structural Similarity | misc | 1
Inferred from Sequence or Structural Similarity | molecular_function | 463
Inferred from Sequence or Structural Similarity | sequence | 355
Inferred from Sequence or Structural Similarity | subunit_composition | 1
Inferred from Sequence or Structural Similarity | warning | 101
Inferred from high throughput direct assay | biological_process | 17
Inferred from high throughput direct assay | cellular_component | 6863
Inferred from high throughput direct assay | molecular_function | 17
Inferred from high throughput mutant phenotype | molecular_function | 1535
Microscopy | fission_yeast_phenotype | 36029
Non-traceable Author Statement | biological_process | 356
Non-traceable Author Statement | cellular_component | 174
Non-traceable Author Statement | complementation | 1
Non-traceable Author Statement | molecular_function | 133
Northern assay evidence | fission_yeast_phenotype | 118
Northern assay evidence | gene_ex | 75
Other | fission_yeast_phenotype | 1760
Other direct assay | fission_yeast_phenotype | 9
Particle size and count assay | fission_yeast_phenotype | 28
Plasmid maintenance assay evidence | fission_yeast_phenotype | 77
RNA protection assay evidence | gene_ex | 59
Substance quantification evidence | fission_yeast_phenotype | 1065
Traceable Author Statement | PSI-MOD | 1
Traceable Author Statement | PomBase family or domain | 5
Traceable Author Statement | biological_process | 149
Traceable Author Statement | cellular_component | 103
Traceable Author Statement | molecular_function | 139
Traceable Author Statement | sequence | 2
Western blot assay | fission_yeast_phenotype | 3967
Western blot evidence | gene_ex | 25
cell growth assay evidence | fission_yeast_phenotype | 30863
competitive growth assay evidence | fission_yeast_phenotype | 1429
experimental evidence | PSI-MOD | 8141
experimental evidence | gene_ex | 20329
experimental phenotypic evidence | fission_yeast_phenotype | 493
expression microarray evidence | gene_ex | 2017
fusion protein localization evidence | gene_ex | 11
gel electrophoresis evidence | fission_yeast_phenotype | 2299
high throughput nucleotide sequencing assay evidence | fission_yeast_phenotype | 206
immunofluorescence evidence | gene_ex | 6
in situ hybridization assay evidence | gene_ex | 14
mass spectrometry evidence | PSI-MOD | 2090
mass spectrometry evidence | gene_ex | 13688
microscopy evidence used in manual assertion | fission_yeast_phenotype | 659
northern assay evidence used in manual assertion | gene_ex | 802
protein expression level evidence based on western blot used in manual assertion | gene_ex | 2
quantitative PCR | fission_yeast_phenotype | 716
quantitative PCR | gene_ex | 88
quantitative polymerase chain reaction evidence used in manual assertion | gene_ex | 8
reporter gene assay evidence | fission_yeast_phenotype | 2644
reporter gene assay evidence | gene_ex | 144
reverse transcription polymerase chain reaction transcription evidence | gene_ex | 60
ribosome profiling evidence | gene_ex | 32
sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | fission_yeast_phenotype | 22
sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | gene_ex | 2
transcript expression level evidence | fission_yeast_phenotype | 3521
transcript expression level evidence | gene_ex | 16
tryptic phosphopeptide mapping assay evidence used in automatic assertion | PSI-MOD | 20249
western blot evidence used in manual assertion | fission_yeast_phenotype | 151
western blot evidence used in manual assertion | gene_ex | 450
(115 rows)
total:
count
--------
318464
(1 row)
counts of annotation from Canto, by type:
count | cv_name
-------+------------------------------------
1257 | PSI-MOD
2548 | molecular_function
2879 | cellular_component
3524 | biological_process
29998 | PomBase annotation extension terms
35129 | fission_yeast_phenotype
(6 rows)
total
-------
75335
(1 row)