counts of all annotation by type: count | cv_name -------+-------------------------------------- 6 | external_link 22 | ex_tools 27 | cat_act 29 | pathway 90 | m_f_g 188 | subunit_composition 236 | genome_org 412 | misc 446 | complementation 830 | EC numbers 956 | sequence 968 | name_description 1793 | warning 1868 | PomBase family or domain 3881 | mondo 5134 | PomBase gene characterisation status 12357 | biological_process 13531 | molecular_function 17540 | cellular_component 25069 | species_dist 37856 | gene_ex 48358 | PSI-MOD 56050 | PomBase gene products 92424 | fission_yeast_phenotype (24 rows) annotation counts by evidence code and cv type, sorted by cv name: ev_code | cv_name | count ----------------------------------------------------------------------------------+--------------------------+------- Inferred from Direct Assay | PSI-MOD | 16602 Inferred from Mutant Phenotype | PSI-MOD | 1 Inferred from Sequence Model | PSI-MOD | 2 Inferred from Sequence or Structural Similarity | PSI-MOD | 101 Traceable Author Statement | PSI-MOD | 1 experimental evidence | PSI-MOD | 8141 mass spectrometry evidence | PSI-MOD | 3202 tryptic phosphopeptide mapping assay evidence used in automatic assertion | PSI-MOD | 20249 Inferred from Sequence or Structural Similarity | PomBase family or domain | 5 Traceable Author Statement | PomBase family or domain | 5 Inferred by Curator | biological_process | 1133 Inferred from Biological aspect of Ancestor | biological_process | 1774 Inferred from Direct Assay | biological_process | 738 Inferred from Electronic Annotation | biological_process | 458 Inferred from Experiment | biological_process | 264 Inferred from Expression Pattern | biological_process | 25 Inferred from Genetic Interaction | biological_process | 623 Inferred from Mutant Phenotype | biological_process | 3899 Inferred from Physical Interaction | biological_process | 116 Inferred from Sequence Model | biological_process | 188 Inferred from Sequence Orthology | biological_process | 2061 Inferred from Sequence or Structural Similarity | biological_process | 558 Inferred from high throughput direct assay | biological_process | 17 Non-traceable Author Statement | biological_process | 355 Traceable Author Statement | biological_process | 148 Inferred by Curator | cellular_component | 522 Inferred from Biological aspect of Ancestor | cellular_component | 1155 Inferred from Direct Assay | cellular_component | 5240 Inferred from Electronic Annotation | cellular_component | 888 Inferred from Experiment | cellular_component | 238 Inferred from Genetic Interaction | cellular_component | 46 Inferred from Mutant Phenotype | cellular_component | 52 Inferred from Physical Interaction | cellular_component | 286 Inferred from Sequence Model | cellular_component | 92 Inferred from Sequence Orthology | cellular_component | 1477 Inferred from Sequence or Structural Similarity | cellular_component | 404 Inferred from high throughput direct assay | cellular_component | 6863 Non-traceable Author Statement | cellular_component | 174 Traceable Author Statement | cellular_component | 103 Non-traceable Author Statement | complementation | 1 Chromatin immunoprecipitation experiment | fission_yeast_phenotype | 1700 Chromatography evidence | fission_yeast_phenotype | 68 Co-immunoprecipitation experiment | fission_yeast_phenotype | 922 Electrophoretic mobility shift assay data | fission_yeast_phenotype | 156 Enzyme assay data | fission_yeast_phenotype | 1818 Epitope-tagged protein immunolocalization experiment data | fission_yeast_phenotype | 45 Flow cytometry data | fission_yeast_phenotype | 1166 Immunolocalization experiment data | fission_yeast_phenotype | 18 Microscopy | fission_yeast_phenotype | 36110 Northern assay evidence | fission_yeast_phenotype | 118 Other | fission_yeast_phenotype | 1785 Other direct assay | fission_yeast_phenotype | 9 Particle size and count assay | fission_yeast_phenotype | 28 Plasmid maintenance assay evidence | fission_yeast_phenotype | 77 Substance quantification | fission_yeast_phenotype | 1069 Substance quantification evidence | fission_yeast_phenotype | 1 Western blot assay | fission_yeast_phenotype | 4036 cell growth assay evidence | fission_yeast_phenotype | 31029 competitive growth assay evidence | fission_yeast_phenotype | 1429 experimental phenotypic evidence | fission_yeast_phenotype | 493 gel electrophoresis evidence | fission_yeast_phenotype | 2316 high throughput nucleotide sequencing assay evidence | fission_yeast_phenotype | 206 microscopy evidence used in manual assertion | fission_yeast_phenotype | 659 quantitative PCR | fission_yeast_phenotype | 732 reporter gene assay evidence | fission_yeast_phenotype | 2665 sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | fission_yeast_phenotype | 22 transcript expression level evidence | fission_yeast_phenotype | 3596 western blot evidence used in manual assertion | fission_yeast_phenotype | 151 Northern assay evidence | gene_ex | 75 RNA protection assay evidence | gene_ex | 59 Western blot evidence | gene_ex | 25 experimental evidence | gene_ex | 20329 expression microarray evidence | gene_ex | 2017 fusion protein localization evidence | gene_ex | 11 immunofluorescence evidence | gene_ex | 6 in situ hybridization assay evidence | gene_ex | 14 mass spectrometry evidence | gene_ex | 13688 northern assay evidence used in manual assertion | gene_ex | 803 protein expression level evidence based on western blot used in manual assertion | gene_ex | 2 quantitative PCR | gene_ex | 88 quantitative polymerase chain reaction evidence used in manual assertion | gene_ex | 8 reporter gene assay evidence | gene_ex | 144 reverse transcription polymerase chain reaction transcription evidence | gene_ex | 60 ribosome profiling evidence | gene_ex | 32 sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | gene_ex | 2 transcript expression level evidence | gene_ex | 16 western blot evidence used in manual assertion | gene_ex | 450 Inferred from Sequence or Structural Similarity | genome_org | 13 Inferred from Sequence or Structural Similarity | m_f_g | 42 Inferred from Direct Assay | misc | 1 Inferred from Mutant Phenotype | misc | 4 Inferred from Physical Interaction | misc | 2 Inferred from Sequence or Structural Similarity | misc | 1 Inferred by Curator | molecular_function | 133 Inferred from Biological aspect of Ancestor | molecular_function | 1041 Inferred from Direct Assay | molecular_function | 1911 Inferred from Electronic Annotation | molecular_function | 1829 Inferred from Experiment | molecular_function | 445 Inferred from Genetic Interaction | molecular_function | 129 Inferred from Key Residues | molecular_function | 1 Inferred from Mutant Phenotype | molecular_function | 694 Inferred from Physical Interaction | molecular_function | 2519 Inferred from Sequence Model | molecular_function | 1197 Inferred from Sequence Orthology | molecular_function | 1342 Inferred from Sequence or Structural Similarity | molecular_function | 464 Inferred from high throughput direct assay | molecular_function | 17 Inferred from high throughput mutant phenotype | molecular_function | 1535 Non-traceable Author Statement | molecular_function | 131 Traceable Author Statement | molecular_function | 143 Inferred from Direct Assay | sequence | 2 Inferred from Mutant Phenotype | sequence | 8 Inferred from Sequence or Structural Similarity | sequence | 355 Traceable Author Statement | sequence | 2 Inferred from Direct Assay | subunit_composition | 4 Inferred from Sequence or Structural Similarity | subunit_composition | 1 Inferred from Sequence or Structural Similarity | warning | 101 (116 rows) annotation counts by evidence code and cv type, sorted by count: ev_code | cv_name | count ----------------------------------------------------------------------------------+--------------------------+------- Inferred from Sequence or Structural Similarity | misc | 1 Traceable Author Statement | PSI-MOD | 1 Inferred from Key Residues | molecular_function | 1 Non-traceable Author Statement | complementation | 1 Inferred from Mutant Phenotype | PSI-MOD | 1 Inferred from Sequence or Structural Similarity | subunit_composition | 1 Substance quantification evidence | fission_yeast_phenotype | 1 Inferred from Direct Assay | misc | 1 Inferred from Sequence Model | PSI-MOD | 2 Traceable Author Statement | sequence | 2 protein expression level evidence based on western blot used in manual assertion | gene_ex | 2 sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | gene_ex | 2 Inferred from Physical Interaction | misc | 2 Inferred from Direct Assay | sequence | 2 Inferred from Mutant Phenotype | misc | 4 Inferred from Direct Assay | subunit_composition | 4 Traceable Author Statement | PomBase family or domain | 5 Inferred from Sequence or Structural Similarity | PomBase family or domain | 5 immunofluorescence evidence | gene_ex | 6 Inferred from Mutant Phenotype | sequence | 8 quantitative polymerase chain reaction evidence used in manual assertion | gene_ex | 8 Other direct assay | fission_yeast_phenotype | 9 fusion protein localization evidence | gene_ex | 11 Inferred from Sequence or Structural Similarity | genome_org | 13 in situ hybridization assay evidence | gene_ex | 14 transcript expression level evidence | gene_ex | 16 Inferred from high throughput direct assay | molecular_function | 17 Inferred from high throughput direct assay | biological_process | 17 Immunolocalization experiment data | fission_yeast_phenotype | 18 sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | fission_yeast_phenotype | 22 Inferred from Expression Pattern | biological_process | 25 Western blot evidence | gene_ex | 25 Particle size and count assay | fission_yeast_phenotype | 28 ribosome profiling evidence | gene_ex | 32 Inferred from Sequence or Structural Similarity | m_f_g | 42 Epitope-tagged protein immunolocalization experiment data | fission_yeast_phenotype | 45 Inferred from Genetic Interaction | cellular_component | 46 Inferred from Mutant Phenotype | cellular_component | 52 RNA protection assay evidence | gene_ex | 59 reverse transcription polymerase chain reaction transcription evidence | gene_ex | 60 Chromatography evidence | fission_yeast_phenotype | 68 Northern assay evidence | gene_ex | 75 Plasmid maintenance assay evidence | fission_yeast_phenotype | 77 quantitative PCR | gene_ex | 88 Inferred from Sequence Model | cellular_component | 92 Inferred from Sequence or Structural Similarity | warning | 101 Inferred from Sequence or Structural Similarity | PSI-MOD | 101 Traceable Author Statement | cellular_component | 103 Inferred from Physical Interaction | biological_process | 116 Northern assay evidence | fission_yeast_phenotype | 118 Inferred from Genetic Interaction | molecular_function | 129 Non-traceable Author Statement | molecular_function | 131 Inferred by Curator | molecular_function | 133 Traceable Author Statement | molecular_function | 143 reporter gene assay evidence | gene_ex | 144 Traceable Author Statement | biological_process | 148 western blot evidence used in manual assertion | fission_yeast_phenotype | 151 Electrophoretic mobility shift assay data | fission_yeast_phenotype | 156 Non-traceable Author Statement | cellular_component | 174 Inferred from Sequence Model | biological_process | 188 high throughput nucleotide sequencing assay evidence | fission_yeast_phenotype | 206 Inferred from Experiment | cellular_component | 238 Inferred from Experiment | biological_process | 264 Inferred from Physical Interaction | cellular_component | 286 Inferred from Sequence or Structural Similarity | sequence | 355 Non-traceable Author Statement | biological_process | 355 Inferred from Sequence or Structural Similarity | cellular_component | 404 Inferred from Experiment | molecular_function | 445 western blot evidence used in manual assertion | gene_ex | 450 Inferred from Electronic Annotation | biological_process | 458 Inferred from Sequence or Structural Similarity | molecular_function | 464 experimental phenotypic evidence | fission_yeast_phenotype | 493 Inferred by Curator | cellular_component | 522 Inferred from Sequence or Structural Similarity | biological_process | 558 Inferred from Genetic Interaction | biological_process | 623 microscopy evidence used in manual assertion | fission_yeast_phenotype | 659 Inferred from Mutant Phenotype | molecular_function | 694 quantitative PCR | fission_yeast_phenotype | 732 Inferred from Direct Assay | biological_process | 738 northern assay evidence used in manual assertion | gene_ex | 803 Inferred from Electronic Annotation | cellular_component | 888 Co-immunoprecipitation experiment | fission_yeast_phenotype | 922 Inferred from Biological aspect of Ancestor | molecular_function | 1041 Substance quantification | fission_yeast_phenotype | 1069 Inferred by Curator | biological_process | 1133 Inferred from Biological aspect of Ancestor | cellular_component | 1155 Flow cytometry data | fission_yeast_phenotype | 1166 Inferred from Sequence Model | molecular_function | 1197 Inferred from Sequence Orthology | molecular_function | 1342 competitive growth assay evidence | fission_yeast_phenotype | 1429 Inferred from Sequence Orthology | cellular_component | 1477 Inferred from high throughput mutant phenotype | molecular_function | 1535 Chromatin immunoprecipitation experiment | fission_yeast_phenotype | 1700 Inferred from Biological aspect of Ancestor | biological_process | 1774 Other | fission_yeast_phenotype | 1785 Enzyme assay data | fission_yeast_phenotype | 1818 Inferred from Electronic Annotation | molecular_function | 1829 Inferred from Direct Assay | molecular_function | 1911 expression microarray evidence | gene_ex | 2017 Inferred from Sequence Orthology | biological_process | 2061 gel electrophoresis evidence | fission_yeast_phenotype | 2316 Inferred from Physical Interaction | molecular_function | 2519 reporter gene assay evidence | fission_yeast_phenotype | 2665 mass spectrometry evidence | PSI-MOD | 3202 transcript expression level evidence | fission_yeast_phenotype | 3596 Inferred from Mutant Phenotype | biological_process | 3899 Western blot assay | fission_yeast_phenotype | 4036 Inferred from Direct Assay | cellular_component | 5240 Inferred from high throughput direct assay | cellular_component | 6863 experimental evidence | PSI-MOD | 8141 mass spectrometry evidence | gene_ex | 13688 Inferred from Direct Assay | PSI-MOD | 16602 tryptic phosphopeptide mapping assay evidence used in automatic assertion | PSI-MOD | 20249 experimental evidence | gene_ex | 20329 cell growth assay evidence | fission_yeast_phenotype | 31029 Microscopy | fission_yeast_phenotype | 36110 (116 rows) annotation counts by evidence code and cv type, sorted by cv evidence code: ev_code | cv_name | count ----------------------------------------------------------------------------------+--------------------------+------- Chromatin immunoprecipitation experiment | fission_yeast_phenotype | 1700 Chromatography evidence | fission_yeast_phenotype | 68 Co-immunoprecipitation experiment | fission_yeast_phenotype | 922 Electrophoretic mobility shift assay data | fission_yeast_phenotype | 156 Enzyme assay data | fission_yeast_phenotype | 1818 Epitope-tagged protein immunolocalization experiment data | fission_yeast_phenotype | 45 Flow cytometry data | fission_yeast_phenotype | 1166 Immunolocalization experiment data | fission_yeast_phenotype | 18 Inferred by Curator | biological_process | 1133 Inferred by Curator | cellular_component | 522 Inferred by Curator | molecular_function | 133 Inferred from Biological aspect of Ancestor | biological_process | 1774 Inferred from Biological aspect of Ancestor | cellular_component | 1155 Inferred from Biological aspect of Ancestor | molecular_function | 1041 Inferred from Direct Assay | PSI-MOD | 16602 Inferred from Direct Assay | biological_process | 738 Inferred from Direct Assay | cellular_component | 5240 Inferred from Direct Assay | misc | 1 Inferred from Direct Assay | molecular_function | 1911 Inferred from Direct Assay | sequence | 2 Inferred from Direct Assay | subunit_composition | 4 Inferred from Electronic Annotation | biological_process | 458 Inferred from Electronic Annotation | cellular_component | 888 Inferred from Electronic Annotation | molecular_function | 1829 Inferred from Experiment | biological_process | 264 Inferred from Experiment | cellular_component | 238 Inferred from Experiment | molecular_function | 445 Inferred from Expression Pattern | biological_process | 25 Inferred from Genetic Interaction | biological_process | 623 Inferred from Genetic Interaction | cellular_component | 46 Inferred from Genetic Interaction | molecular_function | 129 Inferred from Key Residues | molecular_function | 1 Inferred from Mutant Phenotype | PSI-MOD | 1 Inferred from Mutant Phenotype | biological_process | 3899 Inferred from Mutant Phenotype | cellular_component | 52 Inferred from Mutant Phenotype | misc | 4 Inferred from Mutant Phenotype | molecular_function | 694 Inferred from Mutant Phenotype | sequence | 8 Inferred from Physical Interaction | biological_process | 116 Inferred from Physical Interaction | cellular_component | 286 Inferred from Physical Interaction | misc | 2 Inferred from Physical Interaction | molecular_function | 2519 Inferred from Sequence Model | PSI-MOD | 2 Inferred from Sequence Model | biological_process | 188 Inferred from Sequence Model | cellular_component | 92 Inferred from Sequence Model | molecular_function | 1197 Inferred from Sequence Orthology | biological_process | 2061 Inferred from Sequence Orthology | cellular_component | 1477 Inferred from Sequence Orthology | molecular_function | 1342 Inferred from Sequence or Structural Similarity | PSI-MOD | 101 Inferred from Sequence or Structural Similarity | PomBase family or domain | 5 Inferred from Sequence or Structural Similarity | biological_process | 558 Inferred from Sequence or Structural Similarity | cellular_component | 404 Inferred from Sequence or Structural Similarity | genome_org | 13 Inferred from Sequence or Structural Similarity | m_f_g | 42 Inferred from Sequence or Structural Similarity | misc | 1 Inferred from Sequence or Structural Similarity | molecular_function | 464 Inferred from Sequence or Structural Similarity | sequence | 355 Inferred from Sequence or Structural Similarity | subunit_composition | 1 Inferred from Sequence or Structural Similarity | warning | 101 Inferred from high throughput direct assay | biological_process | 17 Inferred from high throughput direct assay | cellular_component | 6863 Inferred from high throughput direct assay | molecular_function | 17 Inferred from high throughput mutant phenotype | molecular_function | 1535 Microscopy | fission_yeast_phenotype | 36110 Non-traceable Author Statement | biological_process | 355 Non-traceable Author Statement | cellular_component | 174 Non-traceable Author Statement | complementation | 1 Non-traceable Author Statement | molecular_function | 131 Northern assay evidence | fission_yeast_phenotype | 118 Northern assay evidence | gene_ex | 75 Other | fission_yeast_phenotype | 1785 Other direct assay | fission_yeast_phenotype | 9 Particle size and count assay | fission_yeast_phenotype | 28 Plasmid maintenance assay evidence | fission_yeast_phenotype | 77 RNA protection assay evidence | gene_ex | 59 Substance quantification | fission_yeast_phenotype | 1069 Substance quantification evidence | fission_yeast_phenotype | 1 Traceable Author Statement | PSI-MOD | 1 Traceable Author Statement | PomBase family or domain | 5 Traceable Author Statement | biological_process | 148 Traceable Author Statement | cellular_component | 103 Traceable Author Statement | molecular_function | 143 Traceable Author Statement | sequence | 2 Western blot assay | fission_yeast_phenotype | 4036 Western blot evidence | gene_ex | 25 cell growth assay evidence | fission_yeast_phenotype | 31029 competitive growth assay evidence | fission_yeast_phenotype | 1429 experimental evidence | PSI-MOD | 8141 experimental evidence | gene_ex | 20329 experimental phenotypic evidence | fission_yeast_phenotype | 493 expression microarray evidence | gene_ex | 2017 fusion protein localization evidence | gene_ex | 11 gel electrophoresis evidence | fission_yeast_phenotype | 2316 high throughput nucleotide sequencing assay evidence | fission_yeast_phenotype | 206 immunofluorescence evidence | gene_ex | 6 in situ hybridization assay evidence | gene_ex | 14 mass spectrometry evidence | PSI-MOD | 3202 mass spectrometry evidence | gene_ex | 13688 microscopy evidence used in manual assertion | fission_yeast_phenotype | 659 northern assay evidence used in manual assertion | gene_ex | 803 protein expression level evidence based on western blot used in manual assertion | gene_ex | 2 quantitative PCR | fission_yeast_phenotype | 732 quantitative PCR | gene_ex | 88 quantitative polymerase chain reaction evidence used in manual assertion | gene_ex | 8 reporter gene assay evidence | fission_yeast_phenotype | 2665 reporter gene assay evidence | gene_ex | 144 reverse transcription polymerase chain reaction transcription evidence | gene_ex | 60 ribosome profiling evidence | gene_ex | 32 sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | fission_yeast_phenotype | 22 sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | gene_ex | 2 transcript expression level evidence | fission_yeast_phenotype | 3596 transcript expression level evidence | gene_ex | 16 tryptic phosphopeptide mapping assay evidence used in automatic assertion | PSI-MOD | 20249 western blot evidence used in manual assertion | fission_yeast_phenotype | 151 western blot evidence used in manual assertion | gene_ex | 450 (116 rows) total: count -------- 320071 (1 row) counts of annotation from Canto, by type: count | cv_name -------+------------------------------------ 1261 | PSI-MOD 2564 | molecular_function 2920 | cellular_component 3541 | biological_process 30401 | PomBase annotation extension terms 35296 | fission_yeast_phenotype (6 rows) total ------- 75983 (1 row)