counts of all annotation by type:
count | cv_name
-------+--------------------------------------
6 | external_link
22 | ex_tools
27 | cat_act
29 | pathway
90 | m_f_g
188 | subunit_composition
236 | genome_org
412 | misc
446 | complementation
830 | EC numbers
956 | sequence
968 | name_description
1793 | warning
1868 | PomBase family or domain
3904 | mondo
5134 | PomBase gene characterisation status
12303 | biological_process
13571 | molecular_function
17536 | cellular_component
25067 | species_dist
39057 | gene_ex
48367 | PSI-MOD
56071 | PomBase gene products
94195 | fission_yeast_phenotype
(24 rows)
annotation counts by evidence code and cv type, sorted by cv name:
ev_code | cv_name | count
----------------------------------------------------------------------------------+--------------------------+-------
Inferred from Direct Assay | PSI-MOD | 16611
Inferred from Mutant Phenotype | PSI-MOD | 1
Inferred from Sequence Model | PSI-MOD | 2
Inferred from Sequence or Structural Similarity | PSI-MOD | 101
Traceable Author Statement | PSI-MOD | 1
experimental evidence | PSI-MOD | 8141
mass spectrometry evidence | PSI-MOD | 3202
tryptic phosphopeptide mapping assay evidence used in automatic assertion | PSI-MOD | 20249
Inferred from Sequence or Structural Similarity | PomBase family or domain | 5
Traceable Author Statement | PomBase family or domain | 5
Inferred by Curator | biological_process | 1137
Inferred from Biological aspect of Ancestor | biological_process | 1734
Inferred from Direct Assay | biological_process | 742
Inferred from Electronic Annotation | biological_process | 465
Inferred from Experiment | biological_process | 266
Inferred from Expression Pattern | biological_process | 24
Inferred from Genetic Interaction | biological_process | 616
Inferred from Mutant Phenotype | biological_process | 3880
Inferred from Physical Interaction | biological_process | 115
Inferred from Sequence Model | biological_process | 188
Inferred from Sequence Orthology | biological_process | 2058
Inferred from Sequence or Structural Similarity | biological_process | 558
Inferred from high throughput direct assay | biological_process | 17
Non-traceable Author Statement | biological_process | 355
Traceable Author Statement | biological_process | 148
Inferred by Curator | cellular_component | 521
Inferred from Biological aspect of Ancestor | cellular_component | 1122
Inferred from Direct Assay | cellular_component | 5263
Inferred from Electronic Annotation | cellular_component | 888
Inferred from Experiment | cellular_component | 245
Inferred from Genetic Interaction | cellular_component | 46
Inferred from Mutant Phenotype | cellular_component | 52
Inferred from Physical Interaction | cellular_component | 286
Inferred from Sequence Model | cellular_component | 92
Inferred from Sequence Orthology | cellular_component | 1479
Inferred from Sequence or Structural Similarity | cellular_component | 404
Inferred from high throughput direct assay | cellular_component | 6860
Non-traceable Author Statement | cellular_component | 175
Traceable Author Statement | cellular_component | 103
Non-traceable Author Statement | complementation | 1
Chromatin immunoprecipitation experiment | fission_yeast_phenotype | 1727
Chromatography evidence | fission_yeast_phenotype | 68
Co-immunoprecipitation experiment | fission_yeast_phenotype | 922
Electrophoretic mobility shift assay data | fission_yeast_phenotype | 158
Enzyme assay data | fission_yeast_phenotype | 1823
Epitope-tagged protein immunolocalization experiment data | fission_yeast_phenotype | 45
Flow cytometry data | fission_yeast_phenotype | 2147
Immunolocalization experiment data | fission_yeast_phenotype | 18
Microscopy | fission_yeast_phenotype | 36287
Northern assay evidence | fission_yeast_phenotype | 118
Other | fission_yeast_phenotype | 1785
Other direct assay | fission_yeast_phenotype | 9
Particle size and count assay | fission_yeast_phenotype | 28
Plasmid maintenance assay evidence | fission_yeast_phenotype | 77
Substance quantification | fission_yeast_phenotype | 1089
Western blot assay | fission_yeast_phenotype | 4037
cell growth assay evidence | fission_yeast_phenotype | 31457
competitive growth assay evidence | fission_yeast_phenotype | 1429
experimental phenotypic evidence | fission_yeast_phenotype | 493
gel electrophoresis evidence | fission_yeast_phenotype | 2356
high throughput nucleotide sequencing assay evidence | fission_yeast_phenotype | 206
microscopy evidence used in manual assertion | fission_yeast_phenotype | 659
quantitative PCR | fission_yeast_phenotype | 732
reporter gene assay evidence | fission_yeast_phenotype | 2698
sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | fission_yeast_phenotype | 48
transcript expression level evidence | fission_yeast_phenotype | 3628
western blot evidence used in manual assertion | fission_yeast_phenotype | 151
Northern assay evidence | gene_ex | 73
RNA protection assay evidence | gene_ex | 59
Western blot evidence | gene_ex | 25
experimental evidence | gene_ex | 20329
expression microarray evidence | gene_ex | 3213
fusion protein localization evidence | gene_ex | 11
immunofluorescence evidence | gene_ex | 6
in situ hybridization assay evidence | gene_ex | 14
mass spectrometry evidence | gene_ex | 13688
northern assay evidence used in manual assertion | gene_ex | 809
protein expression level evidence based on western blot used in manual assertion | gene_ex | 2
quantitative PCR | gene_ex | 88
quantitative polymerase chain reaction evidence used in manual assertion | gene_ex | 8
reporter gene assay evidence | gene_ex | 144
reverse transcription polymerase chain reaction transcription evidence | gene_ex | 60
ribosome profiling evidence | gene_ex | 32
sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | gene_ex | 2
transcript expression level evidence | gene_ex | 16
western blot evidence used in manual assertion | gene_ex | 451
Inferred from Sequence or Structural Similarity | genome_org | 13
Inferred from Sequence or Structural Similarity | m_f_g | 42
Inferred from Direct Assay | misc | 1
Inferred from Mutant Phenotype | misc | 4
Inferred from Physical Interaction | misc | 2
Inferred from Sequence or Structural Similarity | misc | 1
Inferred by Curator | molecular_function | 135
Inferred from Biological aspect of Ancestor | molecular_function | 976
Inferred from Direct Assay | molecular_function | 1917
Inferred from Electronic Annotation | molecular_function | 1822
Inferred from Experiment | molecular_function | 442
Inferred from Genetic Interaction | molecular_function | 129
Inferred from Key Residues | molecular_function | 1
Inferred from Mutant Phenotype | molecular_function | 803
Inferred from Physical Interaction | molecular_function | 2524
Inferred from Sequence Model | molecular_function | 1193
Inferred from Sequence Orthology | molecular_function | 1340
Inferred from Sequence or Structural Similarity | molecular_function | 465
Inferred from high throughput direct assay | molecular_function | 17
Inferred from high throughput mutant phenotype | molecular_function | 1535
Non-traceable Author Statement | molecular_function | 131
Traceable Author Statement | molecular_function | 141
Inferred from Direct Assay | sequence | 2
Inferred from Mutant Phenotype | sequence | 8
Inferred from Sequence or Structural Similarity | sequence | 355
Traceable Author Statement | sequence | 2
Inferred from Direct Assay | subunit_composition | 4
Inferred from Sequence or Structural Similarity | subunit_composition | 1
Inferred from Sequence or Structural Similarity | warning | 101
(115 rows)
annotation counts by evidence code and cv type, sorted by count:
ev_code | cv_name | count
----------------------------------------------------------------------------------+--------------------------+-------
Non-traceable Author Statement | complementation | 1
Inferred from Key Residues | molecular_function | 1
Traceable Author Statement | PSI-MOD | 1
Inferred from Direct Assay | misc | 1
Inferred from Sequence or Structural Similarity | misc | 1
Inferred from Mutant Phenotype | PSI-MOD | 1
Inferred from Sequence or Structural Similarity | subunit_composition | 1
Inferred from Direct Assay | sequence | 2
Traceable Author Statement | sequence | 2
Inferred from Sequence Model | PSI-MOD | 2
sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | gene_ex | 2
protein expression level evidence based on western blot used in manual assertion | gene_ex | 2
Inferred from Physical Interaction | misc | 2
Inferred from Mutant Phenotype | misc | 4
Inferred from Direct Assay | subunit_composition | 4
Inferred from Sequence or Structural Similarity | PomBase family or domain | 5
Traceable Author Statement | PomBase family or domain | 5
immunofluorescence evidence | gene_ex | 6
Inferred from Mutant Phenotype | sequence | 8
quantitative polymerase chain reaction evidence used in manual assertion | gene_ex | 8
Other direct assay | fission_yeast_phenotype | 9
fusion protein localization evidence | gene_ex | 11
Inferred from Sequence or Structural Similarity | genome_org | 13
in situ hybridization assay evidence | gene_ex | 14
transcript expression level evidence | gene_ex | 16
Inferred from high throughput direct assay | molecular_function | 17
Inferred from high throughput direct assay | biological_process | 17
Immunolocalization experiment data | fission_yeast_phenotype | 18
Inferred from Expression Pattern | biological_process | 24
Western blot evidence | gene_ex | 25
Particle size and count assay | fission_yeast_phenotype | 28
ribosome profiling evidence | gene_ex | 32
Inferred from Sequence or Structural Similarity | m_f_g | 42
Epitope-tagged protein immunolocalization experiment data | fission_yeast_phenotype | 45
Inferred from Genetic Interaction | cellular_component | 46
sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | fission_yeast_phenotype | 48
Inferred from Mutant Phenotype | cellular_component | 52
RNA protection assay evidence | gene_ex | 59
reverse transcription polymerase chain reaction transcription evidence | gene_ex | 60
Chromatography evidence | fission_yeast_phenotype | 68
Northern assay evidence | gene_ex | 73
Plasmid maintenance assay evidence | fission_yeast_phenotype | 77
quantitative PCR | gene_ex | 88
Inferred from Sequence Model | cellular_component | 92
Inferred from Sequence or Structural Similarity | warning | 101
Inferred from Sequence or Structural Similarity | PSI-MOD | 101
Traceable Author Statement | cellular_component | 103
Inferred from Physical Interaction | biological_process | 115
Northern assay evidence | fission_yeast_phenotype | 118
Inferred from Genetic Interaction | molecular_function | 129
Non-traceable Author Statement | molecular_function | 131
Inferred by Curator | molecular_function | 135
Traceable Author Statement | molecular_function | 141
reporter gene assay evidence | gene_ex | 144
Traceable Author Statement | biological_process | 148
western blot evidence used in manual assertion | fission_yeast_phenotype | 151
Electrophoretic mobility shift assay data | fission_yeast_phenotype | 158
Non-traceable Author Statement | cellular_component | 175
Inferred from Sequence Model | biological_process | 188
high throughput nucleotide sequencing assay evidence | fission_yeast_phenotype | 206
Inferred from Experiment | cellular_component | 245
Inferred from Experiment | biological_process | 266
Inferred from Physical Interaction | cellular_component | 286
Non-traceable Author Statement | biological_process | 355
Inferred from Sequence or Structural Similarity | sequence | 355
Inferred from Sequence or Structural Similarity | cellular_component | 404
Inferred from Experiment | molecular_function | 442
western blot evidence used in manual assertion | gene_ex | 451
Inferred from Sequence or Structural Similarity | molecular_function | 465
Inferred from Electronic Annotation | biological_process | 465
experimental phenotypic evidence | fission_yeast_phenotype | 493
Inferred by Curator | cellular_component | 521
Inferred from Sequence or Structural Similarity | biological_process | 558
Inferred from Genetic Interaction | biological_process | 616
microscopy evidence used in manual assertion | fission_yeast_phenotype | 659
quantitative PCR | fission_yeast_phenotype | 732
Inferred from Direct Assay | biological_process | 742
Inferred from Mutant Phenotype | molecular_function | 803
northern assay evidence used in manual assertion | gene_ex | 809
Inferred from Electronic Annotation | cellular_component | 888
Co-immunoprecipitation experiment | fission_yeast_phenotype | 922
Inferred from Biological aspect of Ancestor | molecular_function | 976
Substance quantification | fission_yeast_phenotype | 1089
Inferred from Biological aspect of Ancestor | cellular_component | 1122
Inferred by Curator | biological_process | 1137
Inferred from Sequence Model | molecular_function | 1193
Inferred from Sequence Orthology | molecular_function | 1340
competitive growth assay evidence | fission_yeast_phenotype | 1429
Inferred from Sequence Orthology | cellular_component | 1479
Inferred from high throughput mutant phenotype | molecular_function | 1535
Chromatin immunoprecipitation experiment | fission_yeast_phenotype | 1727
Inferred from Biological aspect of Ancestor | biological_process | 1734
Other | fission_yeast_phenotype | 1785
Inferred from Electronic Annotation | molecular_function | 1822
Enzyme assay data | fission_yeast_phenotype | 1823
Inferred from Direct Assay | molecular_function | 1917
Inferred from Sequence Orthology | biological_process | 2058
Flow cytometry data | fission_yeast_phenotype | 2147
gel electrophoresis evidence | fission_yeast_phenotype | 2356
Inferred from Physical Interaction | molecular_function | 2524
reporter gene assay evidence | fission_yeast_phenotype | 2698
mass spectrometry evidence | PSI-MOD | 3202
expression microarray evidence | gene_ex | 3213
transcript expression level evidence | fission_yeast_phenotype | 3628
Inferred from Mutant Phenotype | biological_process | 3880
Western blot assay | fission_yeast_phenotype | 4037
Inferred from Direct Assay | cellular_component | 5263
Inferred from high throughput direct assay | cellular_component | 6860
experimental evidence | PSI-MOD | 8141
mass spectrometry evidence | gene_ex | 13688
Inferred from Direct Assay | PSI-MOD | 16611
tryptic phosphopeptide mapping assay evidence used in automatic assertion | PSI-MOD | 20249
experimental evidence | gene_ex | 20329
cell growth assay evidence | fission_yeast_phenotype | 31457
Microscopy | fission_yeast_phenotype | 36287
(115 rows)
annotation counts by evidence code and cv type, sorted by cv evidence code:
ev_code | cv_name | count
----------------------------------------------------------------------------------+--------------------------+-------
Chromatin immunoprecipitation experiment | fission_yeast_phenotype | 1727
Chromatography evidence | fission_yeast_phenotype | 68
Co-immunoprecipitation experiment | fission_yeast_phenotype | 922
Electrophoretic mobility shift assay data | fission_yeast_phenotype | 158
Enzyme assay data | fission_yeast_phenotype | 1823
Epitope-tagged protein immunolocalization experiment data | fission_yeast_phenotype | 45
Flow cytometry data | fission_yeast_phenotype | 2147
Immunolocalization experiment data | fission_yeast_phenotype | 18
Inferred by Curator | biological_process | 1137
Inferred by Curator | cellular_component | 521
Inferred by Curator | molecular_function | 135
Inferred from Biological aspect of Ancestor | biological_process | 1734
Inferred from Biological aspect of Ancestor | cellular_component | 1122
Inferred from Biological aspect of Ancestor | molecular_function | 976
Inferred from Direct Assay | PSI-MOD | 16611
Inferred from Direct Assay | biological_process | 742
Inferred from Direct Assay | cellular_component | 5263
Inferred from Direct Assay | misc | 1
Inferred from Direct Assay | molecular_function | 1917
Inferred from Direct Assay | sequence | 2
Inferred from Direct Assay | subunit_composition | 4
Inferred from Electronic Annotation | biological_process | 465
Inferred from Electronic Annotation | cellular_component | 888
Inferred from Electronic Annotation | molecular_function | 1822
Inferred from Experiment | biological_process | 266
Inferred from Experiment | cellular_component | 245
Inferred from Experiment | molecular_function | 442
Inferred from Expression Pattern | biological_process | 24
Inferred from Genetic Interaction | biological_process | 616
Inferred from Genetic Interaction | cellular_component | 46
Inferred from Genetic Interaction | molecular_function | 129
Inferred from Key Residues | molecular_function | 1
Inferred from Mutant Phenotype | PSI-MOD | 1
Inferred from Mutant Phenotype | biological_process | 3880
Inferred from Mutant Phenotype | cellular_component | 52
Inferred from Mutant Phenotype | misc | 4
Inferred from Mutant Phenotype | molecular_function | 803
Inferred from Mutant Phenotype | sequence | 8
Inferred from Physical Interaction | biological_process | 115
Inferred from Physical Interaction | cellular_component | 286
Inferred from Physical Interaction | misc | 2
Inferred from Physical Interaction | molecular_function | 2524
Inferred from Sequence Model | PSI-MOD | 2
Inferred from Sequence Model | biological_process | 188
Inferred from Sequence Model | cellular_component | 92
Inferred from Sequence Model | molecular_function | 1193
Inferred from Sequence Orthology | biological_process | 2058
Inferred from Sequence Orthology | cellular_component | 1479
Inferred from Sequence Orthology | molecular_function | 1340
Inferred from Sequence or Structural Similarity | PSI-MOD | 101
Inferred from Sequence or Structural Similarity | PomBase family or domain | 5
Inferred from Sequence or Structural Similarity | biological_process | 558
Inferred from Sequence or Structural Similarity | cellular_component | 404
Inferred from Sequence or Structural Similarity | genome_org | 13
Inferred from Sequence or Structural Similarity | m_f_g | 42
Inferred from Sequence or Structural Similarity | misc | 1
Inferred from Sequence or Structural Similarity | molecular_function | 465
Inferred from Sequence or Structural Similarity | sequence | 355
Inferred from Sequence or Structural Similarity | subunit_composition | 1
Inferred from Sequence or Structural Similarity | warning | 101
Inferred from high throughput direct assay | biological_process | 17
Inferred from high throughput direct assay | cellular_component | 6860
Inferred from high throughput direct assay | molecular_function | 17
Inferred from high throughput mutant phenotype | molecular_function | 1535
Microscopy | fission_yeast_phenotype | 36287
Non-traceable Author Statement | biological_process | 355
Non-traceable Author Statement | cellular_component | 175
Non-traceable Author Statement | complementation | 1
Non-traceable Author Statement | molecular_function | 131
Northern assay evidence | fission_yeast_phenotype | 118
Northern assay evidence | gene_ex | 73
Other | fission_yeast_phenotype | 1785
Other direct assay | fission_yeast_phenotype | 9
Particle size and count assay | fission_yeast_phenotype | 28
Plasmid maintenance assay evidence | fission_yeast_phenotype | 77
RNA protection assay evidence | gene_ex | 59
Substance quantification | fission_yeast_phenotype | 1089
Traceable Author Statement | PSI-MOD | 1
Traceable Author Statement | PomBase family or domain | 5
Traceable Author Statement | biological_process | 148
Traceable Author Statement | cellular_component | 103
Traceable Author Statement | molecular_function | 141
Traceable Author Statement | sequence | 2
Western blot assay | fission_yeast_phenotype | 4037
Western blot evidence | gene_ex | 25
cell growth assay evidence | fission_yeast_phenotype | 31457
competitive growth assay evidence | fission_yeast_phenotype | 1429
experimental evidence | PSI-MOD | 8141
experimental evidence | gene_ex | 20329
experimental phenotypic evidence | fission_yeast_phenotype | 493
expression microarray evidence | gene_ex | 3213
fusion protein localization evidence | gene_ex | 11
gel electrophoresis evidence | fission_yeast_phenotype | 2356
high throughput nucleotide sequencing assay evidence | fission_yeast_phenotype | 206
immunofluorescence evidence | gene_ex | 6
in situ hybridization assay evidence | gene_ex | 14
mass spectrometry evidence | PSI-MOD | 3202
mass spectrometry evidence | gene_ex | 13688
microscopy evidence used in manual assertion | fission_yeast_phenotype | 659
northern assay evidence used in manual assertion | gene_ex | 809
protein expression level evidence based on western blot used in manual assertion | gene_ex | 2
quantitative PCR | fission_yeast_phenotype | 732
quantitative PCR | gene_ex | 88
quantitative polymerase chain reaction evidence used in manual assertion | gene_ex | 8
reporter gene assay evidence | fission_yeast_phenotype | 2698
reporter gene assay evidence | gene_ex | 144
reverse transcription polymerase chain reaction transcription evidence | gene_ex | 60
ribosome profiling evidence | gene_ex | 32
sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | fission_yeast_phenotype | 48
sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | gene_ex | 2
transcript expression level evidence | fission_yeast_phenotype | 3628
transcript expression level evidence | gene_ex | 16
tryptic phosphopeptide mapping assay evidence used in automatic assertion | PSI-MOD | 20249
western blot evidence used in manual assertion | fission_yeast_phenotype | 151
western blot evidence used in manual assertion | gene_ex | 451
(115 rows)
total:
count
--------
323076
(1 row)
counts of annotation from Canto, by type:
count | cv_name
-------+------------------------------------
1265 | PSI-MOD
2581 | molecular_function
2931 | cellular_component
3566 | biological_process
30940 | PomBase annotation extension terms
35688 | fission_yeast_phenotype
(6 rows)
total
-------
76971
(1 row)