counts of all annotation by type: count | cv_name -------+-------------------------------------- 6 | external_link 22 | ex_tools 27 | cat_act 29 | pathway 90 | m_f_g 189 | subunit_composition 236 | genome_org 411 | misc 446 | complementation 830 | EC numbers 956 | sequence 974 | name_description 1284 | PomGeneExProt 1793 | warning 1868 | PomBase family or domain 3895 | mondo 4738 | PomGeneExRNA 5134 | PomBase gene characterisation status 12267 | biological_process 13650 | molecular_function 17546 | cellular_component 25059 | species_dist 33818 | gene_ex 48522 | PSI-MOD 56125 | PomBase gene products 94891 | fission_yeast_phenotype (26 rows) annotation counts by evidence code and cv type, sorted by cv name: ev_code | cv_name | count ----------------------------------------------------------------------------------+--------------------------+------- Inferred from Direct Assay | PSI-MOD | 3007 Inferred from Mutant Phenotype | PSI-MOD | 1 Inferred from Sequence Model | PSI-MOD | 2 Inferred from Sequence or Structural Similarity | PSI-MOD | 101 Traceable Author Statement | PSI-MOD | 1 experimental evidence | PSI-MOD | 8141 mass spectrometry evidence | PSI-MOD | 3202 tryptic phosphopeptide mapping assay evidence used in automatic assertion | PSI-MOD | 34008 Inferred from Sequence or Structural Similarity | PomBase family or domain | 5 Traceable Author Statement | PomBase family or domain | 5 Western blot evidence | PomGeneExProt | 37 experimental evidence | PomGeneExProt | 1 fusion protein localization evidence | PomGeneExProt | 11 immunofluorescence evidence | PomGeneExProt | 6 mass spectrometry evidence | PomGeneExProt | 614 northern assay evidence used in manual assertion | PomGeneExProt | 5 quantitative PCR | PomGeneExProt | 3 reporter gene assay evidence | PomGeneExProt | 132 ribosome profiling evidence | PomGeneExProt | 30 sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | PomGeneExProt | 2 western blot evidence used in manual assertion | PomGeneExProt | 437 Northern assay evidence | PomGeneExRNA | 104 RNA protection assay evidence | PomGeneExRNA | 58 experimental evidence | PomGeneExRNA | 199 expression microarray evidence | PomGeneExRNA | 3355 northern assay evidence used in manual assertion | PomGeneExRNA | 796 quantitative PCR | PomGeneExRNA | 101 quantitative polymerase chain reaction evidence used in manual assertion | PomGeneExRNA | 8 reporter gene assay evidence | PomGeneExRNA | 12 reverse transcription polymerase chain reaction transcription evidence | PomGeneExRNA | 60 transcript expression level evidence | PomGeneExRNA | 16 western blot evidence used in manual assertion | PomGeneExRNA | 13 Inferred by Curator | biological_process | 1139 Inferred from Biological aspect of Ancestor | biological_process | 1702 Inferred from Direct Assay | biological_process | 753 Inferred from Electronic Annotation | biological_process | 460 Inferred from Experiment | biological_process | 282 Inferred from Expression Pattern | biological_process | 24 Inferred from Genetic Interaction | biological_process | 613 Inferred from Mutant Phenotype | biological_process | 3874 Inferred from Physical Interaction | biological_process | 115 Inferred from Sequence Model | biological_process | 187 Inferred from Sequence Orthology | biological_process | 2047 Inferred from Sequence or Structural Similarity | biological_process | 551 Inferred from high throughput direct assay | biological_process | 17 Non-traceable Author Statement | biological_process | 357 Traceable Author Statement | biological_process | 146 Inferred by Curator | cellular_component | 521 Inferred from Biological aspect of Ancestor | cellular_component | 1058 Inferred from Direct Assay | cellular_component | 5322 Inferred from Electronic Annotation | cellular_component | 904 Inferred from Experiment | cellular_component | 257 Inferred from Genetic Interaction | cellular_component | 46 Inferred from Mutant Phenotype | cellular_component | 52 Inferred from Physical Interaction | cellular_component | 268 Inferred from Sequence Model | cellular_component | 96 Inferred from Sequence Orthology | cellular_component | 1488 Inferred from Sequence or Structural Similarity | cellular_component | 397 Inferred from high throughput direct assay | cellular_component | 6859 Non-traceable Author Statement | cellular_component | 175 Traceable Author Statement | cellular_component | 103 Non-traceable Author Statement | complementation | 1 Chromatin immunoprecipitation experiment | fission_yeast_phenotype | 1733 Chromatography evidence | fission_yeast_phenotype | 69 Co-immunoprecipitation experiment | fission_yeast_phenotype | 940 Electrophoretic mobility shift assay data | fission_yeast_phenotype | 171 Enzyme assay data | fission_yeast_phenotype | 1837 Epitope-tagged protein immunolocalization experiment data | fission_yeast_phenotype | 45 Flow cytometry data | fission_yeast_phenotype | 2125 Immunolocalization experiment data | fission_yeast_phenotype | 18 Microscopy | fission_yeast_phenotype | 36454 Northern assay evidence | fission_yeast_phenotype | 118 Other | fission_yeast_phenotype | 1795 Other direct assay | fission_yeast_phenotype | 9 Particle size and count assay | fission_yeast_phenotype | 28 Plasmid maintenance assay evidence | fission_yeast_phenotype | 77 Substance quantification evidence | fission_yeast_phenotype | 1115 Western blot assay | fission_yeast_phenotype | 4074 cell growth assay evidence | fission_yeast_phenotype | 31645 competitive growth assay evidence | fission_yeast_phenotype | 1428 experimental phenotypic evidence | fission_yeast_phenotype | 493 gel electrophoresis evidence | fission_yeast_phenotype | 2405 high throughput nucleotide sequencing assay evidence | fission_yeast_phenotype | 206 microscopy evidence used in manual assertion | fission_yeast_phenotype | 659 quantitative PCR | fission_yeast_phenotype | 740 reporter gene assay evidence | fission_yeast_phenotype | 2730 sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | fission_yeast_phenotype | 22 transcript expression level evidence | fission_yeast_phenotype | 3659 tryptic phosphopeptide mapping assay evidence used in automatic assertion | fission_yeast_phenotype | 149 western blot evidence used in manual assertion | fission_yeast_phenotype | 147 experimental evidence | gene_ex | 20120 in situ hybridization assay evidence | gene_ex | 14 mass spectrometry evidence | gene_ex | 13682 protein expression level evidence based on western blot used in manual assertion | gene_ex | 2 Inferred from Sequence or Structural Similarity | genome_org | 13 Inferred from Sequence or Structural Similarity | m_f_g | 42 Inferred from Direct Assay | misc | 1 Inferred from Mutant Phenotype | misc | 4 Inferred from Physical Interaction | misc | 2 Inferred from Sequence or Structural Similarity | misc | 1 Inferred by Curator | molecular_function | 135 Inferred from Biological aspect of Ancestor | molecular_function | 965 Inferred from Direct Assay | molecular_function | 1937 Inferred from Electronic Annotation | molecular_function | 1810 Inferred from Experiment | molecular_function | 483 Inferred from Genetic Interaction | molecular_function | 129 Inferred from Key Residues | molecular_function | 1 Inferred from Mutant Phenotype | molecular_function | 820 Inferred from Physical Interaction | molecular_function | 2547 Inferred from Sequence Model | molecular_function | 1193 Inferred from Sequence Orthology | molecular_function | 1339 Inferred from Sequence or Structural Similarity | molecular_function | 467 Inferred from high throughput direct assay | molecular_function | 17 Inferred from high throughput mutant phenotype | molecular_function | 1535 Non-traceable Author Statement | molecular_function | 131 Traceable Author Statement | molecular_function | 141 Inferred from Direct Assay | sequence | 2 Inferred from Mutant Phenotype | sequence | 8 Inferred from Sequence or Structural Similarity | sequence | 355 Traceable Author Statement | sequence | 2 Inferred from Direct Assay | subunit_composition | 4 Inferred from Sequence or Structural Similarity | subunit_composition | 1 Inferred from Sequence or Structural Similarity | warning | 101 (123 rows) annotation counts by evidence code and cv type, sorted by count: ev_code | cv_name | count ----------------------------------------------------------------------------------+--------------------------+------- experimental evidence | PomGeneExProt | 1 Inferred from Mutant Phenotype | PSI-MOD | 1 Non-traceable Author Statement | complementation | 1 Inferred from Sequence or Structural Similarity | subunit_composition | 1 Inferred from Direct Assay | misc | 1 Inferred from Sequence or Structural Similarity | misc | 1 Traceable Author Statement | PSI-MOD | 1 Inferred from Key Residues | molecular_function | 1 Inferred from Sequence Model | PSI-MOD | 2 protein expression level evidence based on western blot used in manual assertion | gene_ex | 2 Inferred from Direct Assay | sequence | 2 Traceable Author Statement | sequence | 2 sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | PomGeneExProt | 2 Inferred from Physical Interaction | misc | 2 quantitative PCR | PomGeneExProt | 3 Inferred from Mutant Phenotype | misc | 4 Inferred from Direct Assay | subunit_composition | 4 Inferred from Sequence or Structural Similarity | PomBase family or domain | 5 Traceable Author Statement | PomBase family or domain | 5 northern assay evidence used in manual assertion | PomGeneExProt | 5 immunofluorescence evidence | PomGeneExProt | 6 Inferred from Mutant Phenotype | sequence | 8 quantitative polymerase chain reaction evidence used in manual assertion | PomGeneExRNA | 8 Other direct assay | fission_yeast_phenotype | 9 fusion protein localization evidence | PomGeneExProt | 11 reporter gene assay evidence | PomGeneExRNA | 12 Inferred from Sequence or Structural Similarity | genome_org | 13 western blot evidence used in manual assertion | PomGeneExRNA | 13 in situ hybridization assay evidence | gene_ex | 14 transcript expression level evidence | PomGeneExRNA | 16 Inferred from high throughput direct assay | molecular_function | 17 Inferred from high throughput direct assay | biological_process | 17 Immunolocalization experiment data | fission_yeast_phenotype | 18 sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | fission_yeast_phenotype | 22 Inferred from Expression Pattern | biological_process | 24 Particle size and count assay | fission_yeast_phenotype | 28 ribosome profiling evidence | PomGeneExProt | 30 Western blot evidence | PomGeneExProt | 37 Inferred from Sequence or Structural Similarity | m_f_g | 42 Epitope-tagged protein immunolocalization experiment data | fission_yeast_phenotype | 45 Inferred from Genetic Interaction | cellular_component | 46 Inferred from Mutant Phenotype | cellular_component | 52 RNA protection assay evidence | PomGeneExRNA | 58 reverse transcription polymerase chain reaction transcription evidence | PomGeneExRNA | 60 Chromatography evidence | fission_yeast_phenotype | 69 Plasmid maintenance assay evidence | fission_yeast_phenotype | 77 Inferred from Sequence Model | cellular_component | 96 quantitative PCR | PomGeneExRNA | 101 Inferred from Sequence or Structural Similarity | PSI-MOD | 101 Inferred from Sequence or Structural Similarity | warning | 101 Traceable Author Statement | cellular_component | 103 Northern assay evidence | PomGeneExRNA | 104 Inferred from Physical Interaction | biological_process | 115 Northern assay evidence | fission_yeast_phenotype | 118 Inferred from Genetic Interaction | molecular_function | 129 Non-traceable Author Statement | molecular_function | 131 reporter gene assay evidence | PomGeneExProt | 132 Inferred by Curator | molecular_function | 135 Traceable Author Statement | molecular_function | 141 Traceable Author Statement | biological_process | 146 western blot evidence used in manual assertion | fission_yeast_phenotype | 147 tryptic phosphopeptide mapping assay evidence used in automatic assertion | fission_yeast_phenotype | 149 Electrophoretic mobility shift assay data | fission_yeast_phenotype | 171 Non-traceable Author Statement | cellular_component | 175 Inferred from Sequence Model | biological_process | 187 experimental evidence | PomGeneExRNA | 199 high throughput nucleotide sequencing assay evidence | fission_yeast_phenotype | 206 Inferred from Experiment | cellular_component | 257 Inferred from Physical Interaction | cellular_component | 268 Inferred from Experiment | biological_process | 282 Inferred from Sequence or Structural Similarity | sequence | 355 Non-traceable Author Statement | biological_process | 357 Inferred from Sequence or Structural Similarity | cellular_component | 397 western blot evidence used in manual assertion | PomGeneExProt | 437 Inferred from Electronic Annotation | biological_process | 460 Inferred from Sequence or Structural Similarity | molecular_function | 467 Inferred from Experiment | molecular_function | 483 experimental phenotypic evidence | fission_yeast_phenotype | 493 Inferred by Curator | cellular_component | 521 Inferred from Sequence or Structural Similarity | biological_process | 551 Inferred from Genetic Interaction | biological_process | 613 mass spectrometry evidence | PomGeneExProt | 614 microscopy evidence used in manual assertion | fission_yeast_phenotype | 659 quantitative PCR | fission_yeast_phenotype | 740 Inferred from Direct Assay | biological_process | 753 northern assay evidence used in manual assertion | PomGeneExRNA | 796 Inferred from Mutant Phenotype | molecular_function | 820 Inferred from Electronic Annotation | cellular_component | 904 Co-immunoprecipitation experiment | fission_yeast_phenotype | 940 Inferred from Biological aspect of Ancestor | molecular_function | 965 Inferred from Biological aspect of Ancestor | cellular_component | 1058 Substance quantification evidence | fission_yeast_phenotype | 1115 Inferred by Curator | biological_process | 1139 Inferred from Sequence Model | molecular_function | 1193 Inferred from Sequence Orthology | molecular_function | 1339 competitive growth assay evidence | fission_yeast_phenotype | 1428 Inferred from Sequence Orthology | cellular_component | 1488 Inferred from high throughput mutant phenotype | molecular_function | 1535 Inferred from Biological aspect of Ancestor | biological_process | 1702 Chromatin immunoprecipitation experiment | fission_yeast_phenotype | 1733 Other | fission_yeast_phenotype | 1795 Inferred from Electronic Annotation | molecular_function | 1810 Enzyme assay data | fission_yeast_phenotype | 1837 Inferred from Direct Assay | molecular_function | 1937 Inferred from Sequence Orthology | biological_process | 2047 Flow cytometry data | fission_yeast_phenotype | 2125 gel electrophoresis evidence | fission_yeast_phenotype | 2405 Inferred from Physical Interaction | molecular_function | 2547 reporter gene assay evidence | fission_yeast_phenotype | 2730 Inferred from Direct Assay | PSI-MOD | 3007 mass spectrometry evidence | PSI-MOD | 3202 expression microarray evidence | PomGeneExRNA | 3355 transcript expression level evidence | fission_yeast_phenotype | 3659 Inferred from Mutant Phenotype | biological_process | 3874 Western blot assay | fission_yeast_phenotype | 4074 Inferred from Direct Assay | cellular_component | 5322 Inferred from high throughput direct assay | cellular_component | 6859 experimental evidence | PSI-MOD | 8141 mass spectrometry evidence | gene_ex | 13682 experimental evidence | gene_ex | 20120 cell growth assay evidence | fission_yeast_phenotype | 31645 tryptic phosphopeptide mapping assay evidence used in automatic assertion | PSI-MOD | 34008 Microscopy | fission_yeast_phenotype | 36454 (123 rows) annotation counts by evidence code and cv type, sorted by cv evidence code: ev_code | cv_name | count ----------------------------------------------------------------------------------+--------------------------+------- Chromatin immunoprecipitation experiment | fission_yeast_phenotype | 1733 Chromatography evidence | fission_yeast_phenotype | 69 Co-immunoprecipitation experiment | fission_yeast_phenotype | 940 Electrophoretic mobility shift assay data | fission_yeast_phenotype | 171 Enzyme assay data | fission_yeast_phenotype | 1837 Epitope-tagged protein immunolocalization experiment data | fission_yeast_phenotype | 45 Flow cytometry data | fission_yeast_phenotype | 2125 Immunolocalization experiment data | fission_yeast_phenotype | 18 Inferred by Curator | biological_process | 1139 Inferred by Curator | cellular_component | 521 Inferred by Curator | molecular_function | 135 Inferred from Biological aspect of Ancestor | biological_process | 1702 Inferred from Biological aspect of Ancestor | cellular_component | 1058 Inferred from Biological aspect of Ancestor | molecular_function | 965 Inferred from Direct Assay | PSI-MOD | 3007 Inferred from Direct Assay | biological_process | 753 Inferred from Direct Assay | cellular_component | 5322 Inferred from Direct Assay | misc | 1 Inferred from Direct Assay | molecular_function | 1937 Inferred from Direct Assay | sequence | 2 Inferred from Direct Assay | subunit_composition | 4 Inferred from Electronic Annotation | biological_process | 460 Inferred from Electronic Annotation | cellular_component | 904 Inferred from Electronic Annotation | molecular_function | 1810 Inferred from Experiment | biological_process | 282 Inferred from Experiment | cellular_component | 257 Inferred from Experiment | molecular_function | 483 Inferred from Expression Pattern | biological_process | 24 Inferred from Genetic Interaction | biological_process | 613 Inferred from Genetic Interaction | cellular_component | 46 Inferred from Genetic Interaction | molecular_function | 129 Inferred from Key Residues | molecular_function | 1 Inferred from Mutant Phenotype | PSI-MOD | 1 Inferred from Mutant Phenotype | biological_process | 3874 Inferred from Mutant Phenotype | cellular_component | 52 Inferred from Mutant Phenotype | misc | 4 Inferred from Mutant Phenotype | molecular_function | 820 Inferred from Mutant Phenotype | sequence | 8 Inferred from Physical Interaction | biological_process | 115 Inferred from Physical Interaction | cellular_component | 268 Inferred from Physical Interaction | misc | 2 Inferred from Physical Interaction | molecular_function | 2547 Inferred from Sequence Model | PSI-MOD | 2 Inferred from Sequence Model | biological_process | 187 Inferred from Sequence Model | cellular_component | 96 Inferred from Sequence Model | molecular_function | 1193 Inferred from Sequence Orthology | biological_process | 2047 Inferred from Sequence Orthology | cellular_component | 1488 Inferred from Sequence Orthology | molecular_function | 1339 Inferred from Sequence or Structural Similarity | PSI-MOD | 101 Inferred from Sequence or Structural Similarity | PomBase family or domain | 5 Inferred from Sequence or Structural Similarity | biological_process | 551 Inferred from Sequence or Structural Similarity | cellular_component | 397 Inferred from Sequence or Structural Similarity | genome_org | 13 Inferred from Sequence or Structural Similarity | m_f_g | 42 Inferred from Sequence or Structural Similarity | misc | 1 Inferred from Sequence or Structural Similarity | molecular_function | 467 Inferred from Sequence or Structural Similarity | sequence | 355 Inferred from Sequence or Structural Similarity | subunit_composition | 1 Inferred from Sequence or Structural Similarity | warning | 101 Inferred from high throughput direct assay | biological_process | 17 Inferred from high throughput direct assay | cellular_component | 6859 Inferred from high throughput direct assay | molecular_function | 17 Inferred from high throughput mutant phenotype | molecular_function | 1535 Microscopy | fission_yeast_phenotype | 36454 Non-traceable Author Statement | biological_process | 357 Non-traceable Author Statement | cellular_component | 175 Non-traceable Author Statement | complementation | 1 Non-traceable Author Statement | molecular_function | 131 Northern assay evidence | PomGeneExRNA | 104 Northern assay evidence | fission_yeast_phenotype | 118 Other | fission_yeast_phenotype | 1795 Other direct assay | fission_yeast_phenotype | 9 Particle size and count assay | fission_yeast_phenotype | 28 Plasmid maintenance assay evidence | fission_yeast_phenotype | 77 RNA protection assay evidence | PomGeneExRNA | 58 Substance quantification evidence | fission_yeast_phenotype | 1115 Traceable Author Statement | PSI-MOD | 1 Traceable Author Statement | PomBase family or domain | 5 Traceable Author Statement | biological_process | 146 Traceable Author Statement | cellular_component | 103 Traceable Author Statement | molecular_function | 141 Traceable Author Statement | sequence | 2 Western blot assay | fission_yeast_phenotype | 4074 Western blot evidence | PomGeneExProt | 37 cell growth assay evidence | fission_yeast_phenotype | 31645 competitive growth assay evidence | fission_yeast_phenotype | 1428 experimental evidence | PSI-MOD | 8141 experimental evidence | PomGeneExProt | 1 experimental evidence | PomGeneExRNA | 199 experimental evidence | gene_ex | 20120 experimental phenotypic evidence | fission_yeast_phenotype | 493 expression microarray evidence | PomGeneExRNA | 3355 fusion protein localization evidence | PomGeneExProt | 11 gel electrophoresis evidence | fission_yeast_phenotype | 2405 high throughput nucleotide sequencing assay evidence | fission_yeast_phenotype | 206 immunofluorescence evidence | PomGeneExProt | 6 in situ hybridization assay evidence | gene_ex | 14 mass spectrometry evidence | PSI-MOD | 3202 mass spectrometry evidence | PomGeneExProt | 614 mass spectrometry evidence | gene_ex | 13682 microscopy evidence used in manual assertion | fission_yeast_phenotype | 659 northern assay evidence used in manual assertion | PomGeneExProt | 5 northern assay evidence used in manual assertion | PomGeneExRNA | 796 protein expression level evidence based on western blot used in manual assertion | gene_ex | 2 quantitative PCR | PomGeneExProt | 3 quantitative PCR | PomGeneExRNA | 101 quantitative PCR | fission_yeast_phenotype | 740 quantitative polymerase chain reaction evidence used in manual assertion | PomGeneExRNA | 8 reporter gene assay evidence | PomGeneExProt | 132 reporter gene assay evidence | PomGeneExRNA | 12 reporter gene assay evidence | fission_yeast_phenotype | 2730 reverse transcription polymerase chain reaction transcription evidence | PomGeneExRNA | 60 ribosome profiling evidence | PomGeneExProt | 30 sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | PomGeneExProt | 2 sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | fission_yeast_phenotype | 22 transcript expression level evidence | PomGeneExRNA | 16 transcript expression level evidence | fission_yeast_phenotype | 3659 tryptic phosphopeptide mapping assay evidence used in automatic assertion | PSI-MOD | 34008 tryptic phosphopeptide mapping assay evidence used in automatic assertion | fission_yeast_phenotype | 149 western blot evidence used in manual assertion | PomGeneExProt | 437 western blot evidence used in manual assertion | PomGeneExRNA | 13 western blot evidence used in manual assertion | fission_yeast_phenotype | 147 (123 rows) total: count -------- 324806 (1 row) counts of annotation from Canto, by type: count | cv_name -------+------------------------------------ 1265 | PSI-MOD 2607 | molecular_function 2975 | cellular_component 3603 | biological_process 31446 | PomBase annotation extension terms 36032 | fission_yeast_phenotype (6 rows) total ------- 77928 (1 row)