counts of all annotation by type: count | cv_name -------+-------------------------------------- 6 | external_link 22 | ex_tools 27 | cat_act 28 | pathway 90 | m_f_g 189 | subunit_composition 236 | genome_org 411 | misc 446 | complementation 727 | PomGeneExRD 830 | EC numbers 956 | sequence 960 | name_description 1265 | PomGeneExProt 1793 | warning 1868 | PomBase family or domain 4559 | mondo 5134 | PomBase gene characterisation status 7181 | PomGeneExRNA 12171 | biological_process 13658 | molecular_function 17563 | cellular_component 25088 | species_dist 33818 | gene_ex 48533 | PSI-MOD 56128 | PomBase gene products 95470 | fission_yeast_phenotype (27 rows) annotation counts by evidence code and cv type, sorted by cv name: ev_code | cv_name | count ----------------------------------------------------------------------------------+--------------------------+------- Inferred from Direct Assay | PSI-MOD | 3018 Inferred from Mutant Phenotype | PSI-MOD | 1 Inferred from Sequence Model | PSI-MOD | 2 Inferred from Sequence or Structural Similarity | PSI-MOD | 101 Traceable Author Statement | PSI-MOD | 1 experimental evidence | PSI-MOD | 8141 mass spectrometry evidence | PSI-MOD | 3202 tryptic phosphopeptide mapping assay evidence used in automatic assertion | PSI-MOD | 34008 Inferred from Sequence or Structural Similarity | PomBase family or domain | 5 Traceable Author Statement | PomBase family or domain | 5 Western blot evidence | PomGeneExProt | 48 experimental evidence | PomGeneExProt | 1 fusion protein localization evidence | PomGeneExProt | 11 immunofluorescence evidence | PomGeneExProt | 6 mass spectrometry evidence | PomGeneExProt | 614 northern assay evidence used in manual assertion | PomGeneExProt | 5 quantitative PCR | PomGeneExProt | 3 reporter gene assay evidence | PomGeneExProt | 132 sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | PomGeneExProt | 2 western blot evidence used in manual assertion | PomGeneExProt | 437 ribosome profiling evidence | PomGeneExRD | 727 Northern assay evidence | PomGeneExRNA | 104 RNA protection assay evidence | PomGeneExRNA | 58 RNA-sequencing evidence | PomGeneExRNA | 2445 experimental evidence | PomGeneExRNA | 198 expression microarray evidence | PomGeneExRNA | 3355 northern assay evidence used in manual assertion | PomGeneExRNA | 795 quantitative PCR | PomGeneExRNA | 101 quantitative polymerase chain reaction evidence used in manual assertion | PomGeneExRNA | 8 reporter gene assay evidence | PomGeneExRNA | 12 reverse transcription polymerase chain reaction transcription evidence | PomGeneExRNA | 60 transcript expression level evidence | PomGeneExRNA | 16 western blot evidence used in manual assertion | PomGeneExRNA | 13 Inferred by Curator | biological_process | 1122 Inferred from Biological aspect of Ancestor | biological_process | 1658 Inferred from Direct Assay | biological_process | 753 Inferred from Electronic Annotation | biological_process | 456 Inferred from Experiment | biological_process | 288 Inferred from Expression Pattern | biological_process | 20 Inferred from Genetic Interaction | biological_process | 608 Inferred from Mutant Phenotype | biological_process | 3851 Inferred from Physical Interaction | biological_process | 115 Inferred from Sequence Model | biological_process | 181 Inferred from Sequence Orthology | biological_process | 2048 Inferred from Sequence or Structural Similarity | biological_process | 552 Inferred from high throughput direct assay | biological_process | 17 Non-traceable Author Statement | biological_process | 357 Traceable Author Statement | biological_process | 145 Inferred by Curator | cellular_component | 522 Inferred from Biological aspect of Ancestor | cellular_component | 1038 Inferred from Direct Assay | cellular_component | 5351 Inferred from Electronic Annotation | cellular_component | 904 Inferred from Experiment | cellular_component | 258 Inferred from Genetic Interaction | cellular_component | 46 Inferred from Mutant Phenotype | cellular_component | 53 Inferred from Physical Interaction | cellular_component | 268 Inferred from Sequence Model | cellular_component | 96 Inferred from Sequence Orthology | cellular_component | 1494 Inferred from Sequence or Structural Similarity | cellular_component | 397 Inferred from high throughput direct assay | cellular_component | 6859 Non-traceable Author Statement | cellular_component | 175 Traceable Author Statement | cellular_component | 102 Non-traceable Author Statement | complementation | 1 Chromatin immunoprecipitation experiment | fission_yeast_phenotype | 1806 Chromatography evidence | fission_yeast_phenotype | 69 Co-immunoprecipitation experiment | fission_yeast_phenotype | 941 Electrophoretic mobility shift assay data | fission_yeast_phenotype | 172 Enzyme assay data | fission_yeast_phenotype | 1837 Epitope-tagged protein immunolocalization experiment data | fission_yeast_phenotype | 45 Flow cytometry data | fission_yeast_phenotype | 2144 Immunolocalization experiment data | fission_yeast_phenotype | 18 Microscopy | fission_yeast_phenotype | 36560 Northern assay evidence | fission_yeast_phenotype | 118 Other | fission_yeast_phenotype | 1802 Other direct assay | fission_yeast_phenotype | 9 Particle size and count assay | fission_yeast_phenotype | 30 Plasmid maintenance assay evidence | fission_yeast_phenotype | 77 Substance quantification evidence | fission_yeast_phenotype | 1115 Western blot assay | fission_yeast_phenotype | 4104 cell growth assay evidence | fission_yeast_phenotype | 31886 competitive growth assay evidence | fission_yeast_phenotype | 1428 experimental phenotypic evidence | fission_yeast_phenotype | 493 gel electrophoresis evidence | fission_yeast_phenotype | 2408 high throughput nucleotide sequencing assay evidence | fission_yeast_phenotype | 206 microscopy evidence used in manual assertion | fission_yeast_phenotype | 659 quantitative PCR | fission_yeast_phenotype | 765 reporter gene assay evidence | fission_yeast_phenotype | 2747 sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | fission_yeast_phenotype | 22 transcript expression level evidence | fission_yeast_phenotype | 3713 tryptic phosphopeptide mapping assay evidence used in automatic assertion | fission_yeast_phenotype | 149 western blot evidence used in manual assertion | fission_yeast_phenotype | 147 experimental evidence | gene_ex | 20120 in situ hybridization assay evidence | gene_ex | 14 mass spectrometry evidence | gene_ex | 13682 protein expression level evidence based on western blot used in manual assertion | gene_ex | 2 Inferred from Sequence or Structural Similarity | genome_org | 13 Inferred from Sequence or Structural Similarity | m_f_g | 42 Inferred from Direct Assay | misc | 1 Inferred from Mutant Phenotype | misc | 4 Inferred from Physical Interaction | misc | 2 Inferred from Sequence or Structural Similarity | misc | 1 Inferred by Curator | molecular_function | 135 Inferred from Biological aspect of Ancestor | molecular_function | 959 Inferred from Direct Assay | molecular_function | 1933 Inferred from Electronic Annotation | molecular_function | 1845 Inferred from Experiment | molecular_function | 493 Inferred from Genetic Interaction | molecular_function | 125 Inferred from Key Residues | molecular_function | 1 Inferred from Mutant Phenotype | molecular_function | 830 Inferred from Physical Interaction | molecular_function | 2538 Inferred from Sequence Model | molecular_function | 1178 Inferred from Sequence Orthology | molecular_function | 1320 Inferred from Sequence or Structural Similarity | molecular_function | 462 Inferred from high throughput direct assay | molecular_function | 17 Inferred from high throughput mutant phenotype | molecular_function | 1535 Non-traceable Author Statement | molecular_function | 150 Traceable Author Statement | molecular_function | 137 Inferred from Direct Assay | sequence | 2 Inferred from Mutant Phenotype | sequence | 8 Inferred from Sequence or Structural Similarity | sequence | 355 Traceable Author Statement | sequence | 2 Inferred from Direct Assay | subunit_composition | 4 Inferred from Sequence or Structural Similarity | subunit_composition | 1 Inferred from Sequence or Structural Similarity | warning | 101 (124 rows) annotation counts by evidence code and cv type, sorted by count: ev_code | cv_name | count ----------------------------------------------------------------------------------+--------------------------+------- Non-traceable Author Statement | complementation | 1 Inferred from Direct Assay | misc | 1 Inferred from Sequence or Structural Similarity | misc | 1 Inferred from Key Residues | molecular_function | 1 Inferred from Mutant Phenotype | PSI-MOD | 1 experimental evidence | PomGeneExProt | 1 Inferred from Sequence or Structural Similarity | subunit_composition | 1 Traceable Author Statement | PSI-MOD | 1 Inferred from Direct Assay | sequence | 2 sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | PomGeneExProt | 2 Traceable Author Statement | sequence | 2 Inferred from Sequence Model | PSI-MOD | 2 protein expression level evidence based on western blot used in manual assertion | gene_ex | 2 Inferred from Physical Interaction | misc | 2 quantitative PCR | PomGeneExProt | 3 Inferred from Mutant Phenotype | misc | 4 Inferred from Direct Assay | subunit_composition | 4 Traceable Author Statement | PomBase family or domain | 5 northern assay evidence used in manual assertion | PomGeneExProt | 5 Inferred from Sequence or Structural Similarity | PomBase family or domain | 5 immunofluorescence evidence | PomGeneExProt | 6 quantitative polymerase chain reaction evidence used in manual assertion | PomGeneExRNA | 8 Inferred from Mutant Phenotype | sequence | 8 Other direct assay | fission_yeast_phenotype | 9 fusion protein localization evidence | PomGeneExProt | 11 reporter gene assay evidence | PomGeneExRNA | 12 western blot evidence used in manual assertion | PomGeneExRNA | 13 Inferred from Sequence or Structural Similarity | genome_org | 13 in situ hybridization assay evidence | gene_ex | 14 transcript expression level evidence | PomGeneExRNA | 16 Inferred from high throughput direct assay | molecular_function | 17 Inferred from high throughput direct assay | biological_process | 17 Immunolocalization experiment data | fission_yeast_phenotype | 18 Inferred from Expression Pattern | biological_process | 20 sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | fission_yeast_phenotype | 22 Particle size and count assay | fission_yeast_phenotype | 30 Inferred from Sequence or Structural Similarity | m_f_g | 42 Epitope-tagged protein immunolocalization experiment data | fission_yeast_phenotype | 45 Inferred from Genetic Interaction | cellular_component | 46 Western blot evidence | PomGeneExProt | 48 Inferred from Mutant Phenotype | cellular_component | 53 RNA protection assay evidence | PomGeneExRNA | 58 reverse transcription polymerase chain reaction transcription evidence | PomGeneExRNA | 60 Chromatography evidence | fission_yeast_phenotype | 69 Plasmid maintenance assay evidence | fission_yeast_phenotype | 77 Inferred from Sequence Model | cellular_component | 96 Inferred from Sequence or Structural Similarity | PSI-MOD | 101 Inferred from Sequence or Structural Similarity | warning | 101 quantitative PCR | PomGeneExRNA | 101 Traceable Author Statement | cellular_component | 102 Northern assay evidence | PomGeneExRNA | 104 Inferred from Physical Interaction | biological_process | 115 Northern assay evidence | fission_yeast_phenotype | 118 Inferred from Genetic Interaction | molecular_function | 125 reporter gene assay evidence | PomGeneExProt | 132 Inferred by Curator | molecular_function | 135 Traceable Author Statement | molecular_function | 137 Traceable Author Statement | biological_process | 145 western blot evidence used in manual assertion | fission_yeast_phenotype | 147 tryptic phosphopeptide mapping assay evidence used in automatic assertion | fission_yeast_phenotype | 149 Non-traceable Author Statement | molecular_function | 150 Electrophoretic mobility shift assay data | fission_yeast_phenotype | 172 Non-traceable Author Statement | cellular_component | 175 Inferred from Sequence Model | biological_process | 181 experimental evidence | PomGeneExRNA | 198 high throughput nucleotide sequencing assay evidence | fission_yeast_phenotype | 206 Inferred from Experiment | cellular_component | 258 Inferred from Physical Interaction | cellular_component | 268 Inferred from Experiment | biological_process | 288 Inferred from Sequence or Structural Similarity | sequence | 355 Non-traceable Author Statement | biological_process | 357 Inferred from Sequence or Structural Similarity | cellular_component | 397 western blot evidence used in manual assertion | PomGeneExProt | 437 Inferred from Electronic Annotation | biological_process | 456 Inferred from Sequence or Structural Similarity | molecular_function | 462 Inferred from Experiment | molecular_function | 493 experimental phenotypic evidence | fission_yeast_phenotype | 493 Inferred by Curator | cellular_component | 522 Inferred from Sequence or Structural Similarity | biological_process | 552 Inferred from Genetic Interaction | biological_process | 608 mass spectrometry evidence | PomGeneExProt | 614 microscopy evidence used in manual assertion | fission_yeast_phenotype | 659 ribosome profiling evidence | PomGeneExRD | 727 Inferred from Direct Assay | biological_process | 753 quantitative PCR | fission_yeast_phenotype | 765 northern assay evidence used in manual assertion | PomGeneExRNA | 795 Inferred from Mutant Phenotype | molecular_function | 830 Inferred from Electronic Annotation | cellular_component | 904 Co-immunoprecipitation experiment | fission_yeast_phenotype | 941 Inferred from Biological aspect of Ancestor | molecular_function | 959 Inferred from Biological aspect of Ancestor | cellular_component | 1038 Substance quantification evidence | fission_yeast_phenotype | 1115 Inferred by Curator | biological_process | 1122 Inferred from Sequence Model | molecular_function | 1178 Inferred from Sequence Orthology | molecular_function | 1320 competitive growth assay evidence | fission_yeast_phenotype | 1428 Inferred from Sequence Orthology | cellular_component | 1494 Inferred from high throughput mutant phenotype | molecular_function | 1535 Inferred from Biological aspect of Ancestor | biological_process | 1658 Other | fission_yeast_phenotype | 1802 Chromatin immunoprecipitation experiment | fission_yeast_phenotype | 1806 Enzyme assay data | fission_yeast_phenotype | 1837 Inferred from Electronic Annotation | molecular_function | 1845 Inferred from Direct Assay | molecular_function | 1933 Inferred from Sequence Orthology | biological_process | 2048 Flow cytometry data | fission_yeast_phenotype | 2144 gel electrophoresis evidence | fission_yeast_phenotype | 2408 RNA-sequencing evidence | PomGeneExRNA | 2445 Inferred from Physical Interaction | molecular_function | 2538 reporter gene assay evidence | fission_yeast_phenotype | 2747 Inferred from Direct Assay | PSI-MOD | 3018 mass spectrometry evidence | PSI-MOD | 3202 expression microarray evidence | PomGeneExRNA | 3355 transcript expression level evidence | fission_yeast_phenotype | 3713 Inferred from Mutant Phenotype | biological_process | 3851 Western blot assay | fission_yeast_phenotype | 4104 Inferred from Direct Assay | cellular_component | 5351 Inferred from high throughput direct assay | cellular_component | 6859 experimental evidence | PSI-MOD | 8141 mass spectrometry evidence | gene_ex | 13682 experimental evidence | gene_ex | 20120 cell growth assay evidence | fission_yeast_phenotype | 31886 tryptic phosphopeptide mapping assay evidence used in automatic assertion | PSI-MOD | 34008 Microscopy | fission_yeast_phenotype | 36560 (124 rows) annotation counts by evidence code and cv type, sorted by cv evidence code: ev_code | cv_name | count ----------------------------------------------------------------------------------+--------------------------+------- Chromatin immunoprecipitation experiment | fission_yeast_phenotype | 1806 Chromatography evidence | fission_yeast_phenotype | 69 Co-immunoprecipitation experiment | fission_yeast_phenotype | 941 Electrophoretic mobility shift assay data | fission_yeast_phenotype | 172 Enzyme assay data | fission_yeast_phenotype | 1837 Epitope-tagged protein immunolocalization experiment data | fission_yeast_phenotype | 45 Flow cytometry data | fission_yeast_phenotype | 2144 Immunolocalization experiment data | fission_yeast_phenotype | 18 Inferred by Curator | biological_process | 1122 Inferred by Curator | cellular_component | 522 Inferred by Curator | molecular_function | 135 Inferred from Biological aspect of Ancestor | biological_process | 1658 Inferred from Biological aspect of Ancestor | cellular_component | 1038 Inferred from Biological aspect of Ancestor | molecular_function | 959 Inferred from Direct Assay | PSI-MOD | 3018 Inferred from Direct Assay | biological_process | 753 Inferred from Direct Assay | cellular_component | 5351 Inferred from Direct Assay | misc | 1 Inferred from Direct Assay | molecular_function | 1933 Inferred from Direct Assay | sequence | 2 Inferred from Direct Assay | subunit_composition | 4 Inferred from Electronic Annotation | biological_process | 456 Inferred from Electronic Annotation | cellular_component | 904 Inferred from Electronic Annotation | molecular_function | 1845 Inferred from Experiment | biological_process | 288 Inferred from Experiment | cellular_component | 258 Inferred from Experiment | molecular_function | 493 Inferred from Expression Pattern | biological_process | 20 Inferred from Genetic Interaction | biological_process | 608 Inferred from Genetic Interaction | cellular_component | 46 Inferred from Genetic Interaction | molecular_function | 125 Inferred from Key Residues | molecular_function | 1 Inferred from Mutant Phenotype | PSI-MOD | 1 Inferred from Mutant Phenotype | biological_process | 3851 Inferred from Mutant Phenotype | cellular_component | 53 Inferred from Mutant Phenotype | misc | 4 Inferred from Mutant Phenotype | molecular_function | 830 Inferred from Mutant Phenotype | sequence | 8 Inferred from Physical Interaction | biological_process | 115 Inferred from Physical Interaction | cellular_component | 268 Inferred from Physical Interaction | misc | 2 Inferred from Physical Interaction | molecular_function | 2538 Inferred from Sequence Model | PSI-MOD | 2 Inferred from Sequence Model | biological_process | 181 Inferred from Sequence Model | cellular_component | 96 Inferred from Sequence Model | molecular_function | 1178 Inferred from Sequence Orthology | biological_process | 2048 Inferred from Sequence Orthology | cellular_component | 1494 Inferred from Sequence Orthology | molecular_function | 1320 Inferred from Sequence or Structural Similarity | PSI-MOD | 101 Inferred from Sequence or Structural Similarity | PomBase family or domain | 5 Inferred from Sequence or Structural Similarity | biological_process | 552 Inferred from Sequence or Structural Similarity | cellular_component | 397 Inferred from Sequence or Structural Similarity | genome_org | 13 Inferred from Sequence or Structural Similarity | m_f_g | 42 Inferred from Sequence or Structural Similarity | misc | 1 Inferred from Sequence or Structural Similarity | molecular_function | 462 Inferred from Sequence or Structural Similarity | sequence | 355 Inferred from Sequence or Structural Similarity | subunit_composition | 1 Inferred from Sequence or Structural Similarity | warning | 101 Inferred from high throughput direct assay | biological_process | 17 Inferred from high throughput direct assay | cellular_component | 6859 Inferred from high throughput direct assay | molecular_function | 17 Inferred from high throughput mutant phenotype | molecular_function | 1535 Microscopy | fission_yeast_phenotype | 36560 Non-traceable Author Statement | biological_process | 357 Non-traceable Author Statement | cellular_component | 175 Non-traceable Author Statement | complementation | 1 Non-traceable Author Statement | molecular_function | 150 Northern assay evidence | PomGeneExRNA | 104 Northern assay evidence | fission_yeast_phenotype | 118 Other | fission_yeast_phenotype | 1802 Other direct assay | fission_yeast_phenotype | 9 Particle size and count assay | fission_yeast_phenotype | 30 Plasmid maintenance assay evidence | fission_yeast_phenotype | 77 RNA protection assay evidence | PomGeneExRNA | 58 RNA-sequencing evidence | PomGeneExRNA | 2445 Substance quantification evidence | fission_yeast_phenotype | 1115 Traceable Author Statement | PSI-MOD | 1 Traceable Author Statement | PomBase family or domain | 5 Traceable Author Statement | biological_process | 145 Traceable Author Statement | cellular_component | 102 Traceable Author Statement | molecular_function | 137 Traceable Author Statement | sequence | 2 Western blot assay | fission_yeast_phenotype | 4104 Western blot evidence | PomGeneExProt | 48 cell growth assay evidence | fission_yeast_phenotype | 31886 competitive growth assay evidence | fission_yeast_phenotype | 1428 experimental evidence | PSI-MOD | 8141 experimental evidence | PomGeneExProt | 1 experimental evidence | PomGeneExRNA | 198 experimental evidence | gene_ex | 20120 experimental phenotypic evidence | fission_yeast_phenotype | 493 expression microarray evidence | PomGeneExRNA | 3355 fusion protein localization evidence | PomGeneExProt | 11 gel electrophoresis evidence | fission_yeast_phenotype | 2408 high throughput nucleotide sequencing assay evidence | fission_yeast_phenotype | 206 immunofluorescence evidence | PomGeneExProt | 6 in situ hybridization assay evidence | gene_ex | 14 mass spectrometry evidence | PSI-MOD | 3202 mass spectrometry evidence | PomGeneExProt | 614 mass spectrometry evidence | gene_ex | 13682 microscopy evidence used in manual assertion | fission_yeast_phenotype | 659 northern assay evidence used in manual assertion | PomGeneExProt | 5 northern assay evidence used in manual assertion | PomGeneExRNA | 795 protein expression level evidence based on western blot used in manual assertion | gene_ex | 2 quantitative PCR | PomGeneExProt | 3 quantitative PCR | PomGeneExRNA | 101 quantitative PCR | fission_yeast_phenotype | 765 quantitative polymerase chain reaction evidence used in manual assertion | PomGeneExRNA | 8 reporter gene assay evidence | PomGeneExProt | 132 reporter gene assay evidence | PomGeneExRNA | 12 reporter gene assay evidence | fission_yeast_phenotype | 2747 reverse transcription polymerase chain reaction transcription evidence | PomGeneExRNA | 60 ribosome profiling evidence | PomGeneExRD | 727 sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | PomGeneExProt | 2 sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | fission_yeast_phenotype | 22 transcript expression level evidence | PomGeneExRNA | 16 transcript expression level evidence | fission_yeast_phenotype | 3713 tryptic phosphopeptide mapping assay evidence used in automatic assertion | PSI-MOD | 34008 tryptic phosphopeptide mapping assay evidence used in automatic assertion | fission_yeast_phenotype | 149 western blot evidence used in manual assertion | PomGeneExProt | 437 western blot evidence used in manual assertion | PomGeneExRNA | 13 western blot evidence used in manual assertion | fission_yeast_phenotype | 147 (124 rows) total: count -------- 329157 (1 row) counts of annotation from Canto, by type: count | cv_name -------+------------------------------------ 1269 | PSI-MOD 2616 | molecular_function 2991 | cellular_component 3616 | biological_process 31746 | PomBase annotation extension terms 36355 | fission_yeast_phenotype (6 rows) total ------- 78593 (1 row)