counts of all annotation by type: count | cv_name -------+-------------------------------------- 6 | external_link 22 | ex_tools 27 | cat_act 28 | pathway 90 | m_f_g 189 | subunit_composition 236 | genome_org 411 | misc 446 | complementation 725 | PomGeneExRD 830 | EC numbers 956 | sequence 961 | name_description 1268 | PomGeneExProt 1793 | warning 1869 | PomBase family or domain 4561 | mondo 5134 | PomBase gene characterisation status 7180 | PomGeneExRNA 12141 | biological_process 13712 | molecular_function 17554 | cellular_component 25094 | species_dist 33818 | gene_ex 48535 | PSI-MOD 56219 | PomBase gene products 95877 | fission_yeast_phenotype (27 rows) annotation counts by evidence code and cv type, sorted by cv name: ev_code | cv_name | count ----------------------------------------------------------------------------------+--------------------------+------- Inferred from Direct Assay | PSI-MOD | 3020 Inferred from Mutant Phenotype | PSI-MOD | 1 Inferred from Sequence Model | PSI-MOD | 2 Inferred from Sequence or Structural Similarity | PSI-MOD | 101 Traceable Author Statement | PSI-MOD | 1 experimental evidence | PSI-MOD | 8141 mass spectrometry evidence | PSI-MOD | 3202 tryptic phosphopeptide mapping assay evidence used in automatic assertion | PSI-MOD | 34008 Inferred from Sequence or Structural Similarity | PomBase family or domain | 5 Traceable Author Statement | PomBase family or domain | 5 Microscopy | PomGeneExProt | 2 Western blot evidence | PomGeneExProt | 49 experimental evidence | PomGeneExProt | 1 fusion protein localization evidence | PomGeneExProt | 11 immunofluorescence evidence | PomGeneExProt | 6 mass spectrometry evidence | PomGeneExProt | 614 northern assay evidence used in manual assertion | PomGeneExProt | 5 quantitative PCR | PomGeneExProt | 3 reporter gene assay evidence | PomGeneExProt | 132 sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | PomGeneExProt | 2 western blot evidence used in manual assertion | PomGeneExProt | 437 ribosome profiling evidence | PomGeneExRD | 725 Northern assay evidence | PomGeneExRNA | 104 RNA protection assay evidence | PomGeneExRNA | 58 RNA-sequencing evidence | PomGeneExRNA | 2442 experimental evidence | PomGeneExRNA | 198 expression microarray evidence | PomGeneExRNA | 3355 in situ hybridization evidence used in manual assertion | PomGeneExRNA | 2 northern assay evidence used in manual assertion | PomGeneExRNA | 795 quantitative PCR | PomGeneExRNA | 101 quantitative polymerase chain reaction evidence used in manual assertion | PomGeneExRNA | 8 reporter gene assay evidence | PomGeneExRNA | 12 reverse transcription polymerase chain reaction transcription evidence | PomGeneExRNA | 60 transcript expression level evidence | PomGeneExRNA | 16 western blot evidence used in manual assertion | PomGeneExRNA | 13 Inferred by Curator | biological_process | 1117 Inferred from Biological aspect of Ancestor | biological_process | 1630 Inferred from Direct Assay | biological_process | 747 Inferred from Electronic Annotation | biological_process | 452 Inferred from Experiment | biological_process | 290 Inferred from Expression Pattern | biological_process | 20 Inferred from Genetic Interaction | biological_process | 613 Inferred from Mutant Phenotype | biological_process | 3859 Inferred from Physical Interaction | biological_process | 113 Inferred from Sequence Model | biological_process | 180 Inferred from Sequence Orthology | biological_process | 2053 Inferred from Sequence or Structural Similarity | biological_process | 551 Inferred from high throughput direct assay | biological_process | 17 Non-traceable Author Statement | biological_process | 352 Traceable Author Statement | biological_process | 147 Inferred by Curator | cellular_component | 522 Inferred from Biological aspect of Ancestor | cellular_component | 1026 Inferred from Direct Assay | cellular_component | 5354 Inferred from Electronic Annotation | cellular_component | 906 Inferred from Experiment | cellular_component | 257 Inferred from Genetic Interaction | cellular_component | 46 Inferred from Mutant Phenotype | cellular_component | 53 Inferred from Physical Interaction | cellular_component | 269 Inferred from Sequence Model | cellular_component | 96 Inferred from Sequence Orthology | cellular_component | 1495 Inferred from Sequence or Structural Similarity | cellular_component | 399 Inferred from high throughput direct assay | cellular_component | 6856 Non-traceable Author Statement | cellular_component | 175 Traceable Author Statement | cellular_component | 100 Non-traceable Author Statement | complementation | 1 Chromatin immunoprecipitation experiment | fission_yeast_phenotype | 1823 Chromatography evidence | fission_yeast_phenotype | 69 Co-immunoprecipitation experiment | fission_yeast_phenotype | 941 Electrophoretic mobility shift assay data | fission_yeast_phenotype | 172 Enzyme assay data | fission_yeast_phenotype | 1843 Epitope-tagged protein immunolocalization experiment data | fission_yeast_phenotype | 45 Flow cytometry data | fission_yeast_phenotype | 2149 Immunolocalization experiment data | fission_yeast_phenotype | 18 Microscopy | fission_yeast_phenotype | 36812 Northern assay evidence | fission_yeast_phenotype | 118 Other | fission_yeast_phenotype | 1817 Other direct assay | fission_yeast_phenotype | 9 Particle size and count assay | fission_yeast_phenotype | 33 Plasmid maintenance assay evidence | fission_yeast_phenotype | 77 Substance quantification | fission_yeast_phenotype | 1 Substance quantification evidence | fission_yeast_phenotype | 1114 Western blot assay | fission_yeast_phenotype | 4120 cell growth assay evidence | fission_yeast_phenotype | 31918 competitive growth assay evidence | fission_yeast_phenotype | 1428 experimental phenotypic evidence | fission_yeast_phenotype | 493 gel electrophoresis evidence | fission_yeast_phenotype | 2408 high throughput nucleotide sequencing assay evidence | fission_yeast_phenotype | 206 microscopy evidence used in manual assertion | fission_yeast_phenotype | 659 quantitative PCR | fission_yeast_phenotype | 768 reporter gene assay evidence | fission_yeast_phenotype | 2759 sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | fission_yeast_phenotype | 22 transcript expression level evidence | fission_yeast_phenotype | 3759 tryptic phosphopeptide mapping assay evidence used in automatic assertion | fission_yeast_phenotype | 149 western blot evidence used in manual assertion | fission_yeast_phenotype | 147 experimental evidence | gene_ex | 20120 in situ hybridization assay evidence | gene_ex | 14 mass spectrometry evidence | gene_ex | 13682 protein expression level evidence based on western blot used in manual assertion | gene_ex | 2 Inferred from Sequence or Structural Similarity | genome_org | 13 Inferred from Sequence or Structural Similarity | m_f_g | 42 Inferred from Direct Assay | misc | 1 Inferred from Mutant Phenotype | misc | 4 Inferred from Physical Interaction | misc | 2 Inferred from Sequence or Structural Similarity | misc | 1 Inferred by Curator | molecular_function | 134 Inferred from Biological aspect of Ancestor | molecular_function | 948 Inferred from Direct Assay | molecular_function | 1933 Inferred from Electronic Annotation | molecular_function | 1850 Inferred from Experiment | molecular_function | 499 Inferred from Genetic Interaction | molecular_function | 125 Inferred from Key Residues | molecular_function | 1 Inferred from Mutant Phenotype | molecular_function | 831 Inferred from Physical Interaction | molecular_function | 2546 Inferred from Sequence Model | molecular_function | 1195 Inferred from Sequence Orthology | molecular_function | 1345 Inferred from Sequence or Structural Similarity | molecular_function | 466 Inferred from high throughput direct assay | molecular_function | 17 Inferred from high throughput mutant phenotype | molecular_function | 1535 Non-traceable Author Statement | molecular_function | 150 Traceable Author Statement | molecular_function | 137 Inferred from Direct Assay | sequence | 2 Inferred from Mutant Phenotype | sequence | 8 Inferred from Sequence or Structural Similarity | sequence | 355 Traceable Author Statement | sequence | 2 Inferred from Direct Assay | subunit_composition | 4 Inferred from Sequence or Structural Similarity | subunit_composition | 1 Inferred from Sequence or Structural Similarity | warning | 101 (127 rows) annotation counts by evidence code and cv type, sorted by count: ev_code | cv_name | count ----------------------------------------------------------------------------------+--------------------------+------- Inferred from Direct Assay | misc | 1 Inferred from Key Residues | molecular_function | 1 Inferred from Mutant Phenotype | PSI-MOD | 1 Non-traceable Author Statement | complementation | 1 Inferred from Sequence or Structural Similarity | subunit_composition | 1 Inferred from Sequence or Structural Similarity | misc | 1 Substance quantification | fission_yeast_phenotype | 1 experimental evidence | PomGeneExProt | 1 Traceable Author Statement | PSI-MOD | 1 Inferred from Sequence Model | PSI-MOD | 2 Microscopy | PomGeneExProt | 2 Traceable Author Statement | sequence | 2 in situ hybridization evidence used in manual assertion | PomGeneExRNA | 2 protein expression level evidence based on western blot used in manual assertion | gene_ex | 2 Inferred from Physical Interaction | misc | 2 Inferred from Direct Assay | sequence | 2 sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | PomGeneExProt | 2 quantitative PCR | PomGeneExProt | 3 Inferred from Direct Assay | subunit_composition | 4 Inferred from Mutant Phenotype | misc | 4 northern assay evidence used in manual assertion | PomGeneExProt | 5 Traceable Author Statement | PomBase family or domain | 5 Inferred from Sequence or Structural Similarity | PomBase family or domain | 5 immunofluorescence evidence | PomGeneExProt | 6 Inferred from Mutant Phenotype | sequence | 8 quantitative polymerase chain reaction evidence used in manual assertion | PomGeneExRNA | 8 Other direct assay | fission_yeast_phenotype | 9 fusion protein localization evidence | PomGeneExProt | 11 reporter gene assay evidence | PomGeneExRNA | 12 Inferred from Sequence or Structural Similarity | genome_org | 13 western blot evidence used in manual assertion | PomGeneExRNA | 13 in situ hybridization assay evidence | gene_ex | 14 transcript expression level evidence | PomGeneExRNA | 16 Inferred from high throughput direct assay | molecular_function | 17 Inferred from high throughput direct assay | biological_process | 17 Immunolocalization experiment data | fission_yeast_phenotype | 18 Inferred from Expression Pattern | biological_process | 20 sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | fission_yeast_phenotype | 22 Particle size and count assay | fission_yeast_phenotype | 33 Inferred from Sequence or Structural Similarity | m_f_g | 42 Epitope-tagged protein immunolocalization experiment data | fission_yeast_phenotype | 45 Inferred from Genetic Interaction | cellular_component | 46 Western blot evidence | PomGeneExProt | 49 Inferred from Mutant Phenotype | cellular_component | 53 RNA protection assay evidence | PomGeneExRNA | 58 reverse transcription polymerase chain reaction transcription evidence | PomGeneExRNA | 60 Chromatography evidence | fission_yeast_phenotype | 69 Plasmid maintenance assay evidence | fission_yeast_phenotype | 77 Inferred from Sequence Model | cellular_component | 96 Traceable Author Statement | cellular_component | 100 Inferred from Sequence or Structural Similarity | PSI-MOD | 101 Inferred from Sequence or Structural Similarity | warning | 101 quantitative PCR | PomGeneExRNA | 101 Northern assay evidence | PomGeneExRNA | 104 Inferred from Physical Interaction | biological_process | 113 Northern assay evidence | fission_yeast_phenotype | 118 Inferred from Genetic Interaction | molecular_function | 125 reporter gene assay evidence | PomGeneExProt | 132 Inferred by Curator | molecular_function | 134 Traceable Author Statement | molecular_function | 137 Traceable Author Statement | biological_process | 147 western blot evidence used in manual assertion | fission_yeast_phenotype | 147 tryptic phosphopeptide mapping assay evidence used in automatic assertion | fission_yeast_phenotype | 149 Non-traceable Author Statement | molecular_function | 150 Electrophoretic mobility shift assay data | fission_yeast_phenotype | 172 Non-traceable Author Statement | cellular_component | 175 Inferred from Sequence Model | biological_process | 180 experimental evidence | PomGeneExRNA | 198 high throughput nucleotide sequencing assay evidence | fission_yeast_phenotype | 206 Inferred from Experiment | cellular_component | 257 Inferred from Physical Interaction | cellular_component | 269 Inferred from Experiment | biological_process | 290 Non-traceable Author Statement | biological_process | 352 Inferred from Sequence or Structural Similarity | sequence | 355 Inferred from Sequence or Structural Similarity | cellular_component | 399 western blot evidence used in manual assertion | PomGeneExProt | 437 Inferred from Electronic Annotation | biological_process | 452 Inferred from Sequence or Structural Similarity | molecular_function | 466 experimental phenotypic evidence | fission_yeast_phenotype | 493 Inferred from Experiment | molecular_function | 499 Inferred by Curator | cellular_component | 522 Inferred from Sequence or Structural Similarity | biological_process | 551 Inferred from Genetic Interaction | biological_process | 613 mass spectrometry evidence | PomGeneExProt | 614 microscopy evidence used in manual assertion | fission_yeast_phenotype | 659 ribosome profiling evidence | PomGeneExRD | 725 Inferred from Direct Assay | biological_process | 747 quantitative PCR | fission_yeast_phenotype | 768 northern assay evidence used in manual assertion | PomGeneExRNA | 795 Inferred from Mutant Phenotype | molecular_function | 831 Inferred from Electronic Annotation | cellular_component | 906 Co-immunoprecipitation experiment | fission_yeast_phenotype | 941 Inferred from Biological aspect of Ancestor | molecular_function | 948 Inferred from Biological aspect of Ancestor | cellular_component | 1026 Substance quantification evidence | fission_yeast_phenotype | 1114 Inferred by Curator | biological_process | 1117 Inferred from Sequence Model | molecular_function | 1195 Inferred from Sequence Orthology | molecular_function | 1345 competitive growth assay evidence | fission_yeast_phenotype | 1428 Inferred from Sequence Orthology | cellular_component | 1495 Inferred from high throughput mutant phenotype | molecular_function | 1535 Inferred from Biological aspect of Ancestor | biological_process | 1630 Other | fission_yeast_phenotype | 1817 Chromatin immunoprecipitation experiment | fission_yeast_phenotype | 1823 Enzyme assay data | fission_yeast_phenotype | 1843 Inferred from Electronic Annotation | molecular_function | 1850 Inferred from Direct Assay | molecular_function | 1933 Inferred from Sequence Orthology | biological_process | 2053 Flow cytometry data | fission_yeast_phenotype | 2149 gel electrophoresis evidence | fission_yeast_phenotype | 2408 RNA-sequencing evidence | PomGeneExRNA | 2442 Inferred from Physical Interaction | molecular_function | 2546 reporter gene assay evidence | fission_yeast_phenotype | 2759 Inferred from Direct Assay | PSI-MOD | 3020 mass spectrometry evidence | PSI-MOD | 3202 expression microarray evidence | PomGeneExRNA | 3355 transcript expression level evidence | fission_yeast_phenotype | 3759 Inferred from Mutant Phenotype | biological_process | 3859 Western blot assay | fission_yeast_phenotype | 4120 Inferred from Direct Assay | cellular_component | 5354 Inferred from high throughput direct assay | cellular_component | 6856 experimental evidence | PSI-MOD | 8141 mass spectrometry evidence | gene_ex | 13682 experimental evidence | gene_ex | 20120 cell growth assay evidence | fission_yeast_phenotype | 31918 tryptic phosphopeptide mapping assay evidence used in automatic assertion | PSI-MOD | 34008 Microscopy | fission_yeast_phenotype | 36812 (127 rows) annotation counts by evidence code and cv type, sorted by cv evidence code: ev_code | cv_name | count ----------------------------------------------------------------------------------+--------------------------+------- Chromatin immunoprecipitation experiment | fission_yeast_phenotype | 1823 Chromatography evidence | fission_yeast_phenotype | 69 Co-immunoprecipitation experiment | fission_yeast_phenotype | 941 Electrophoretic mobility shift assay data | fission_yeast_phenotype | 172 Enzyme assay data | fission_yeast_phenotype | 1843 Epitope-tagged protein immunolocalization experiment data | fission_yeast_phenotype | 45 Flow cytometry data | fission_yeast_phenotype | 2149 Immunolocalization experiment data | fission_yeast_phenotype | 18 Inferred by Curator | biological_process | 1117 Inferred by Curator | cellular_component | 522 Inferred by Curator | molecular_function | 134 Inferred from Biological aspect of Ancestor | biological_process | 1630 Inferred from Biological aspect of Ancestor | cellular_component | 1026 Inferred from Biological aspect of Ancestor | molecular_function | 948 Inferred from Direct Assay | PSI-MOD | 3020 Inferred from Direct Assay | biological_process | 747 Inferred from Direct Assay | cellular_component | 5354 Inferred from Direct Assay | misc | 1 Inferred from Direct Assay | molecular_function | 1933 Inferred from Direct Assay | sequence | 2 Inferred from Direct Assay | subunit_composition | 4 Inferred from Electronic Annotation | biological_process | 452 Inferred from Electronic Annotation | cellular_component | 906 Inferred from Electronic Annotation | molecular_function | 1850 Inferred from Experiment | biological_process | 290 Inferred from Experiment | cellular_component | 257 Inferred from Experiment | molecular_function | 499 Inferred from Expression Pattern | biological_process | 20 Inferred from Genetic Interaction | biological_process | 613 Inferred from Genetic Interaction | cellular_component | 46 Inferred from Genetic Interaction | molecular_function | 125 Inferred from Key Residues | molecular_function | 1 Inferred from Mutant Phenotype | PSI-MOD | 1 Inferred from Mutant Phenotype | biological_process | 3859 Inferred from Mutant Phenotype | cellular_component | 53 Inferred from Mutant Phenotype | misc | 4 Inferred from Mutant Phenotype | molecular_function | 831 Inferred from Mutant Phenotype | sequence | 8 Inferred from Physical Interaction | biological_process | 113 Inferred from Physical Interaction | cellular_component | 269 Inferred from Physical Interaction | misc | 2 Inferred from Physical Interaction | molecular_function | 2546 Inferred from Sequence Model | PSI-MOD | 2 Inferred from Sequence Model | biological_process | 180 Inferred from Sequence Model | cellular_component | 96 Inferred from Sequence Model | molecular_function | 1195 Inferred from Sequence Orthology | biological_process | 2053 Inferred from Sequence Orthology | cellular_component | 1495 Inferred from Sequence Orthology | molecular_function | 1345 Inferred from Sequence or Structural Similarity | PSI-MOD | 101 Inferred from Sequence or Structural Similarity | PomBase family or domain | 5 Inferred from Sequence or Structural Similarity | biological_process | 551 Inferred from Sequence or Structural Similarity | cellular_component | 399 Inferred from Sequence or Structural Similarity | genome_org | 13 Inferred from Sequence or Structural Similarity | m_f_g | 42 Inferred from Sequence or Structural Similarity | misc | 1 Inferred from Sequence or Structural Similarity | molecular_function | 466 Inferred from Sequence or Structural Similarity | sequence | 355 Inferred from Sequence or Structural Similarity | subunit_composition | 1 Inferred from Sequence or Structural Similarity | warning | 101 Inferred from high throughput direct assay | biological_process | 17 Inferred from high throughput direct assay | cellular_component | 6856 Inferred from high throughput direct assay | molecular_function | 17 Inferred from high throughput mutant phenotype | molecular_function | 1535 Microscopy | PomGeneExProt | 2 Microscopy | fission_yeast_phenotype | 36812 Non-traceable Author Statement | biological_process | 352 Non-traceable Author Statement | cellular_component | 175 Non-traceable Author Statement | complementation | 1 Non-traceable Author Statement | molecular_function | 150 Northern assay evidence | PomGeneExRNA | 104 Northern assay evidence | fission_yeast_phenotype | 118 Other | fission_yeast_phenotype | 1817 Other direct assay | fission_yeast_phenotype | 9 Particle size and count assay | fission_yeast_phenotype | 33 Plasmid maintenance assay evidence | fission_yeast_phenotype | 77 RNA protection assay evidence | PomGeneExRNA | 58 RNA-sequencing evidence | PomGeneExRNA | 2442 Substance quantification | fission_yeast_phenotype | 1 Substance quantification evidence | fission_yeast_phenotype | 1114 Traceable Author Statement | PSI-MOD | 1 Traceable Author Statement | PomBase family or domain | 5 Traceable Author Statement | biological_process | 147 Traceable Author Statement | cellular_component | 100 Traceable Author Statement | molecular_function | 137 Traceable Author Statement | sequence | 2 Western blot assay | fission_yeast_phenotype | 4120 Western blot evidence | PomGeneExProt | 49 cell growth assay evidence | fission_yeast_phenotype | 31918 competitive growth assay evidence | fission_yeast_phenotype | 1428 experimental evidence | PSI-MOD | 8141 experimental evidence | PomGeneExProt | 1 experimental evidence | PomGeneExRNA | 198 experimental evidence | gene_ex | 20120 experimental phenotypic evidence | fission_yeast_phenotype | 493 expression microarray evidence | PomGeneExRNA | 3355 fusion protein localization evidence | PomGeneExProt | 11 gel electrophoresis evidence | fission_yeast_phenotype | 2408 high throughput nucleotide sequencing assay evidence | fission_yeast_phenotype | 206 immunofluorescence evidence | PomGeneExProt | 6 in situ hybridization assay evidence | gene_ex | 14 in situ hybridization evidence used in manual assertion | PomGeneExRNA | 2 mass spectrometry evidence | PSI-MOD | 3202 mass spectrometry evidence | PomGeneExProt | 614 mass spectrometry evidence | gene_ex | 13682 microscopy evidence used in manual assertion | fission_yeast_phenotype | 659 northern assay evidence used in manual assertion | PomGeneExProt | 5 northern assay evidence used in manual assertion | PomGeneExRNA | 795 protein expression level evidence based on western blot used in manual assertion | gene_ex | 2 quantitative PCR | PomGeneExProt | 3 quantitative PCR | PomGeneExRNA | 101 quantitative PCR | fission_yeast_phenotype | 768 quantitative polymerase chain reaction evidence used in manual assertion | PomGeneExRNA | 8 reporter gene assay evidence | PomGeneExProt | 132 reporter gene assay evidence | PomGeneExRNA | 12 reporter gene assay evidence | fission_yeast_phenotype | 2759 reverse transcription polymerase chain reaction transcription evidence | PomGeneExRNA | 60 ribosome profiling evidence | PomGeneExRD | 725 sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | PomGeneExProt | 2 sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | fission_yeast_phenotype | 22 transcript expression level evidence | PomGeneExRNA | 16 transcript expression level evidence | fission_yeast_phenotype | 3759 tryptic phosphopeptide mapping assay evidence used in automatic assertion | PSI-MOD | 34008 tryptic phosphopeptide mapping assay evidence used in automatic assertion | fission_yeast_phenotype | 149 western blot evidence used in manual assertion | PomGeneExProt | 437 western blot evidence used in manual assertion | PomGeneExRNA | 13 western blot evidence used in manual assertion | fission_yeast_phenotype | 147 (127 rows) total: count -------- 329682 (1 row) counts of annotation from Canto, by type: count | cv_name -------+------------------------------------ 1271 | PSI-MOD 2622 | molecular_function 3008 | cellular_component 3631 | biological_process 31978 | PomBase annotation extension terms 36567 | fission_yeast_phenotype (6 rows) total ------- 79077 (1 row)