counts of all annotation by type:
count | cv_name
-------+--------------------------------------
6 | external_link
22 | ex_tools
27 | cat_act
28 | pathway
90 | m_f_g
189 | subunit_composition
237 | genome_org
413 | misc
448 | complementation
725 | PomGeneExRD
830 | EC numbers
958 | sequence
963 | name_description
1274 | PomGeneExProt
1795 | warning
1869 | PomBase family or domain
4532 | mondo
5134 | PomBase gene characterisation status
7185 | PomGeneExRNA
12088 | biological_process
13753 | molecular_function
17594 | cellular_component
25104 | species_dist
33818 | gene_ex
48537 | PSI-MOD
56279 | PomBase gene products
95403 | fission_yeast_phenotype
(27 rows)
annotation counts by evidence code and cv type, sorted by cv name:
ev_code | cv_name | count
----------------------------------------------------------------------------------+--------------------------+-------
Inferred from Direct Assay | PSI-MOD | 3022
Inferred from Mutant Phenotype | PSI-MOD | 1
Inferred from Sequence Model | PSI-MOD | 2
Inferred from Sequence or Structural Similarity | PSI-MOD | 101
Traceable Author Statement | PSI-MOD | 1
experimental evidence | PSI-MOD | 8141
mass spectrometry evidence | PSI-MOD | 3202
tryptic phosphopeptide mapping assay evidence used in automatic assertion | PSI-MOD | 34008
Inferred from Sequence or Structural Similarity | PomBase family or domain | 5
Traceable Author Statement | PomBase family or domain | 5
Microscopy | PomGeneExProt | 5
Western blot evidence | PomGeneExProt | 50
experimental evidence | PomGeneExProt | 1
fusion protein localization evidence | PomGeneExProt | 11
immunofluorescence evidence | PomGeneExProt | 6
mass spectrometry evidence | PomGeneExProt | 614
northern assay evidence used in manual assertion | PomGeneExProt | 5
quantitative PCR | PomGeneExProt | 3
reporter gene assay evidence | PomGeneExProt | 134
sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | PomGeneExProt | 2
western blot evidence used in manual assertion | PomGeneExProt | 437
ribosome profiling evidence | PomGeneExRD | 725
Northern assay evidence | PomGeneExRNA | 104
RNA protection assay evidence | PomGeneExRNA | 58
RNA-sequencing evidence | PomGeneExRNA | 2442
experimental evidence | PomGeneExRNA | 198
expression microarray evidence | PomGeneExRNA | 3359
in situ hybridization evidence used in manual assertion | PomGeneExRNA | 3
northern assay evidence used in manual assertion | PomGeneExRNA | 795
quantitative PCR | PomGeneExRNA | 101
quantitative polymerase chain reaction evidence used in manual assertion | PomGeneExRNA | 8
reporter gene assay evidence | PomGeneExRNA | 12
reverse transcription polymerase chain reaction transcription evidence | PomGeneExRNA | 60
transcript expression level evidence | PomGeneExRNA | 16
western blot evidence used in manual assertion | PomGeneExRNA | 13
Inferred by Curator | biological_process | 1122
Inferred from Biological aspect of Ancestor | biological_process | 1582
Inferred from Direct Assay | biological_process | 742
Inferred from Electronic Annotation | biological_process | 458
Inferred from Experiment | biological_process | 291
Inferred from Expression Pattern | biological_process | 20
Inferred from Genetic Interaction | biological_process | 612
Inferred from Mutant Phenotype | biological_process | 3858
Inferred from Physical Interaction | biological_process | 111
Inferred from Sequence Model | biological_process | 178
Inferred from Sequence Orthology | biological_process | 2051
Inferred from Sequence or Structural Similarity | biological_process | 551
Inferred from high throughput direct assay | biological_process | 17
Non-traceable Author Statement | biological_process | 351
Traceable Author Statement | biological_process | 144
Inferred by Curator | cellular_component | 521
Inferred from Biological aspect of Ancestor | cellular_component | 1019
Inferred from Direct Assay | cellular_component | 5416
Inferred from Electronic Annotation | cellular_component | 895
Inferred from Experiment | cellular_component | 254
Inferred from Genetic Interaction | cellular_component | 46
Inferred from Mutant Phenotype | cellular_component | 53
Inferred from Physical Interaction | cellular_component | 269
Inferred from Sequence Model | cellular_component | 96
Inferred from Sequence Orthology | cellular_component | 1499
Inferred from Sequence or Structural Similarity | cellular_component | 397
Inferred from high throughput direct assay | cellular_component | 6855
Non-traceable Author Statement | cellular_component | 175
Traceable Author Statement | cellular_component | 99
Non-traceable Author Statement | complementation | 1
Chromatin immunoprecipitation experiment | fission_yeast_phenotype | 1836
Chromatography evidence | fission_yeast_phenotype | 69
Co-immunoprecipitation experiment | fission_yeast_phenotype | 946
Electrophoretic mobility shift assay data | fission_yeast_phenotype | 171
Enzyme assay data | fission_yeast_phenotype | 1847
Epitope-tagged protein immunolocalization experiment data | fission_yeast_phenotype | 45
Flow cytometry data | fission_yeast_phenotype | 2153
Immunolocalization experiment data | fission_yeast_phenotype | 18
Microscopy | fission_yeast_phenotype | 36808
Northern assay evidence | fission_yeast_phenotype | 118
Other | fission_yeast_phenotype | 1816
Other direct assay | fission_yeast_phenotype | 9
Particle size and count assay | fission_yeast_phenotype | 33
Plasmid maintenance assay evidence | fission_yeast_phenotype | 81
Substance quantification evidence | fission_yeast_phenotype | 1115
Western blot assay | fission_yeast_phenotype | 4150
cell growth assay evidence | fission_yeast_phenotype | 32037
competitive growth assay evidence | fission_yeast_phenotype | 1428
experimental phenotypic evidence | fission_yeast_phenotype | 493
gel electrophoresis evidence | fission_yeast_phenotype | 2417
high throughput nucleotide sequencing assay evidence | fission_yeast_phenotype | 206
quantitative PCR | fission_yeast_phenotype | 768
reporter gene assay evidence | fission_yeast_phenotype | 2758
sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | fission_yeast_phenotype | 22
transcript expression level evidence | fission_yeast_phenotype | 3763
tryptic phosphopeptide mapping assay evidence used in automatic assertion | fission_yeast_phenotype | 149
western blot evidence used in manual assertion | fission_yeast_phenotype | 147
experimental evidence | gene_ex | 20120
in situ hybridization assay evidence | gene_ex | 14
mass spectrometry evidence | gene_ex | 13682
protein expression level evidence based on western blot used in manual assertion | gene_ex | 2
Inferred from Sequence or Structural Similarity | genome_org | 13
Inferred from Sequence or Structural Similarity | m_f_g | 42
Inferred from Direct Assay | misc | 1
Inferred from Mutant Phenotype | misc | 4
Inferred from Physical Interaction | misc | 2
Inferred from Sequence or Structural Similarity | misc | 1
Inferred by Curator | molecular_function | 135
Inferred from Biological aspect of Ancestor | molecular_function | 937
Inferred from Direct Assay | molecular_function | 1935
Inferred from Electronic Annotation | molecular_function | 1896
Inferred from Experiment | molecular_function | 504
Inferred from Genetic Interaction | molecular_function | 127
Inferred from Key Residues | molecular_function | 1
Inferred from Mutant Phenotype | molecular_function | 832
Inferred from Physical Interaction | molecular_function | 2545
Inferred from Sequence Model | molecular_function | 1190
Inferred from Sequence Orthology | molecular_function | 1345
Inferred from Sequence or Structural Similarity | molecular_function | 466
Inferred from high throughput direct assay | molecular_function | 17
Inferred from high throughput mutant phenotype | molecular_function | 1535
Non-traceable Author Statement | molecular_function | 151
Traceable Author Statement | molecular_function | 137
Inferred from Direct Assay | sequence | 2
Inferred from Mutant Phenotype | sequence | 8
Inferred from Sequence or Structural Similarity | sequence | 355
Traceable Author Statement | sequence | 2
Inferred from Direct Assay | subunit_composition | 4
Inferred from Sequence or Structural Similarity | subunit_composition | 1
Inferred from Sequence or Structural Similarity | warning | 101
(125 rows)
annotation counts by evidence code and cv type, sorted by count:
ev_code | cv_name | count
----------------------------------------------------------------------------------+--------------------------+-------
Inferred from Mutant Phenotype | PSI-MOD | 1
Non-traceable Author Statement | complementation | 1
Inferred from Sequence or Structural Similarity | subunit_composition | 1
Inferred from Direct Assay | misc | 1
Inferred from Sequence or Structural Similarity | misc | 1
experimental evidence | PomGeneExProt | 1
Inferred from Key Residues | molecular_function | 1
Traceable Author Statement | PSI-MOD | 1
sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | PomGeneExProt | 2
Traceable Author Statement | sequence | 2
Inferred from Direct Assay | sequence | 2
Inferred from Physical Interaction | misc | 2
Inferred from Sequence Model | PSI-MOD | 2
protein expression level evidence based on western blot used in manual assertion | gene_ex | 2
in situ hybridization evidence used in manual assertion | PomGeneExRNA | 3
quantitative PCR | PomGeneExProt | 3
Inferred from Mutant Phenotype | misc | 4
Inferred from Direct Assay | subunit_composition | 4
Microscopy | PomGeneExProt | 5
Traceable Author Statement | PomBase family or domain | 5
northern assay evidence used in manual assertion | PomGeneExProt | 5
Inferred from Sequence or Structural Similarity | PomBase family or domain | 5
immunofluorescence evidence | PomGeneExProt | 6
Inferred from Mutant Phenotype | sequence | 8
quantitative polymerase chain reaction evidence used in manual assertion | PomGeneExRNA | 8
Other direct assay | fission_yeast_phenotype | 9
fusion protein localization evidence | PomGeneExProt | 11
reporter gene assay evidence | PomGeneExRNA | 12
western blot evidence used in manual assertion | PomGeneExRNA | 13
Inferred from Sequence or Structural Similarity | genome_org | 13
in situ hybridization assay evidence | gene_ex | 14
transcript expression level evidence | PomGeneExRNA | 16
Inferred from high throughput direct assay | biological_process | 17
Inferred from high throughput direct assay | molecular_function | 17
Immunolocalization experiment data | fission_yeast_phenotype | 18
Inferred from Expression Pattern | biological_process | 20
sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | fission_yeast_phenotype | 22
Particle size and count assay | fission_yeast_phenotype | 33
Inferred from Sequence or Structural Similarity | m_f_g | 42
Epitope-tagged protein immunolocalization experiment data | fission_yeast_phenotype | 45
Inferred from Genetic Interaction | cellular_component | 46
Western blot evidence | PomGeneExProt | 50
Inferred from Mutant Phenotype | cellular_component | 53
RNA protection assay evidence | PomGeneExRNA | 58
reverse transcription polymerase chain reaction transcription evidence | PomGeneExRNA | 60
Chromatography evidence | fission_yeast_phenotype | 69
Plasmid maintenance assay evidence | fission_yeast_phenotype | 81
Inferred from Sequence Model | cellular_component | 96
Traceable Author Statement | cellular_component | 99
Inferred from Sequence or Structural Similarity | PSI-MOD | 101
quantitative PCR | PomGeneExRNA | 101
Inferred from Sequence or Structural Similarity | warning | 101
Northern assay evidence | PomGeneExRNA | 104
Inferred from Physical Interaction | biological_process | 111
Northern assay evidence | fission_yeast_phenotype | 118
Inferred from Genetic Interaction | molecular_function | 127
reporter gene assay evidence | PomGeneExProt | 134
Inferred by Curator | molecular_function | 135
Traceable Author Statement | molecular_function | 137
Traceable Author Statement | biological_process | 144
western blot evidence used in manual assertion | fission_yeast_phenotype | 147
tryptic phosphopeptide mapping assay evidence used in automatic assertion | fission_yeast_phenotype | 149
Non-traceable Author Statement | molecular_function | 151
Electrophoretic mobility shift assay data | fission_yeast_phenotype | 171
Non-traceable Author Statement | cellular_component | 175
Inferred from Sequence Model | biological_process | 178
experimental evidence | PomGeneExRNA | 198
high throughput nucleotide sequencing assay evidence | fission_yeast_phenotype | 206
Inferred from Experiment | cellular_component | 254
Inferred from Physical Interaction | cellular_component | 269
Inferred from Experiment | biological_process | 291
Non-traceable Author Statement | biological_process | 351
Inferred from Sequence or Structural Similarity | sequence | 355
Inferred from Sequence or Structural Similarity | cellular_component | 397
western blot evidence used in manual assertion | PomGeneExProt | 437
Inferred from Electronic Annotation | biological_process | 458
Inferred from Sequence or Structural Similarity | molecular_function | 466
experimental phenotypic evidence | fission_yeast_phenotype | 493
Inferred from Experiment | molecular_function | 504
Inferred by Curator | cellular_component | 521
Inferred from Sequence or Structural Similarity | biological_process | 551
Inferred from Genetic Interaction | biological_process | 612
mass spectrometry evidence | PomGeneExProt | 614
ribosome profiling evidence | PomGeneExRD | 725
Inferred from Direct Assay | biological_process | 742
quantitative PCR | fission_yeast_phenotype | 768
northern assay evidence used in manual assertion | PomGeneExRNA | 795
Inferred from Mutant Phenotype | molecular_function | 832
Inferred from Electronic Annotation | cellular_component | 895
Inferred from Biological aspect of Ancestor | molecular_function | 937
Co-immunoprecipitation experiment | fission_yeast_phenotype | 946
Inferred from Biological aspect of Ancestor | cellular_component | 1019
Substance quantification evidence | fission_yeast_phenotype | 1115
Inferred by Curator | biological_process | 1122
Inferred from Sequence Model | molecular_function | 1190
Inferred from Sequence Orthology | molecular_function | 1345
competitive growth assay evidence | fission_yeast_phenotype | 1428
Inferred from Sequence Orthology | cellular_component | 1499
Inferred from high throughput mutant phenotype | molecular_function | 1535
Inferred from Biological aspect of Ancestor | biological_process | 1582
Other | fission_yeast_phenotype | 1816
Chromatin immunoprecipitation experiment | fission_yeast_phenotype | 1836
Enzyme assay data | fission_yeast_phenotype | 1847
Inferred from Electronic Annotation | molecular_function | 1896
Inferred from Direct Assay | molecular_function | 1935
Inferred from Sequence Orthology | biological_process | 2051
Flow cytometry data | fission_yeast_phenotype | 2153
gel electrophoresis evidence | fission_yeast_phenotype | 2417
RNA-sequencing evidence | PomGeneExRNA | 2442
Inferred from Physical Interaction | molecular_function | 2545
reporter gene assay evidence | fission_yeast_phenotype | 2758
Inferred from Direct Assay | PSI-MOD | 3022
mass spectrometry evidence | PSI-MOD | 3202
expression microarray evidence | PomGeneExRNA | 3359
transcript expression level evidence | fission_yeast_phenotype | 3763
Inferred from Mutant Phenotype | biological_process | 3858
Western blot assay | fission_yeast_phenotype | 4150
Inferred from Direct Assay | cellular_component | 5416
Inferred from high throughput direct assay | cellular_component | 6855
experimental evidence | PSI-MOD | 8141
mass spectrometry evidence | gene_ex | 13682
experimental evidence | gene_ex | 20120
cell growth assay evidence | fission_yeast_phenotype | 32037
tryptic phosphopeptide mapping assay evidence used in automatic assertion | PSI-MOD | 34008
Microscopy | fission_yeast_phenotype | 36808
(125 rows)
annotation counts by evidence code and cv type, sorted by cv evidence code:
ev_code | cv_name | count
----------------------------------------------------------------------------------+--------------------------+-------
Chromatin immunoprecipitation experiment | fission_yeast_phenotype | 1836
Chromatography evidence | fission_yeast_phenotype | 69
Co-immunoprecipitation experiment | fission_yeast_phenotype | 946
Electrophoretic mobility shift assay data | fission_yeast_phenotype | 171
Enzyme assay data | fission_yeast_phenotype | 1847
Epitope-tagged protein immunolocalization experiment data | fission_yeast_phenotype | 45
Flow cytometry data | fission_yeast_phenotype | 2153
Immunolocalization experiment data | fission_yeast_phenotype | 18
Inferred by Curator | biological_process | 1122
Inferred by Curator | cellular_component | 521
Inferred by Curator | molecular_function | 135
Inferred from Biological aspect of Ancestor | biological_process | 1582
Inferred from Biological aspect of Ancestor | cellular_component | 1019
Inferred from Biological aspect of Ancestor | molecular_function | 937
Inferred from Direct Assay | PSI-MOD | 3022
Inferred from Direct Assay | biological_process | 742
Inferred from Direct Assay | cellular_component | 5416
Inferred from Direct Assay | misc | 1
Inferred from Direct Assay | molecular_function | 1935
Inferred from Direct Assay | sequence | 2
Inferred from Direct Assay | subunit_composition | 4
Inferred from Electronic Annotation | biological_process | 458
Inferred from Electronic Annotation | cellular_component | 895
Inferred from Electronic Annotation | molecular_function | 1896
Inferred from Experiment | biological_process | 291
Inferred from Experiment | cellular_component | 254
Inferred from Experiment | molecular_function | 504
Inferred from Expression Pattern | biological_process | 20
Inferred from Genetic Interaction | biological_process | 612
Inferred from Genetic Interaction | cellular_component | 46
Inferred from Genetic Interaction | molecular_function | 127
Inferred from Key Residues | molecular_function | 1
Inferred from Mutant Phenotype | PSI-MOD | 1
Inferred from Mutant Phenotype | biological_process | 3858
Inferred from Mutant Phenotype | cellular_component | 53
Inferred from Mutant Phenotype | misc | 4
Inferred from Mutant Phenotype | molecular_function | 832
Inferred from Mutant Phenotype | sequence | 8
Inferred from Physical Interaction | biological_process | 111
Inferred from Physical Interaction | cellular_component | 269
Inferred from Physical Interaction | misc | 2
Inferred from Physical Interaction | molecular_function | 2545
Inferred from Sequence Model | PSI-MOD | 2
Inferred from Sequence Model | biological_process | 178
Inferred from Sequence Model | cellular_component | 96
Inferred from Sequence Model | molecular_function | 1190
Inferred from Sequence Orthology | biological_process | 2051
Inferred from Sequence Orthology | cellular_component | 1499
Inferred from Sequence Orthology | molecular_function | 1345
Inferred from Sequence or Structural Similarity | PSI-MOD | 101
Inferred from Sequence or Structural Similarity | PomBase family or domain | 5
Inferred from Sequence or Structural Similarity | biological_process | 551
Inferred from Sequence or Structural Similarity | cellular_component | 397
Inferred from Sequence or Structural Similarity | genome_org | 13
Inferred from Sequence or Structural Similarity | m_f_g | 42
Inferred from Sequence or Structural Similarity | misc | 1
Inferred from Sequence or Structural Similarity | molecular_function | 466
Inferred from Sequence or Structural Similarity | sequence | 355
Inferred from Sequence or Structural Similarity | subunit_composition | 1
Inferred from Sequence or Structural Similarity | warning | 101
Inferred from high throughput direct assay | biological_process | 17
Inferred from high throughput direct assay | cellular_component | 6855
Inferred from high throughput direct assay | molecular_function | 17
Inferred from high throughput mutant phenotype | molecular_function | 1535
Microscopy | PomGeneExProt | 5
Microscopy | fission_yeast_phenotype | 36808
Non-traceable Author Statement | biological_process | 351
Non-traceable Author Statement | cellular_component | 175
Non-traceable Author Statement | complementation | 1
Non-traceable Author Statement | molecular_function | 151
Northern assay evidence | PomGeneExRNA | 104
Northern assay evidence | fission_yeast_phenotype | 118
Other | fission_yeast_phenotype | 1816
Other direct assay | fission_yeast_phenotype | 9
Particle size and count assay | fission_yeast_phenotype | 33
Plasmid maintenance assay evidence | fission_yeast_phenotype | 81
RNA protection assay evidence | PomGeneExRNA | 58
RNA-sequencing evidence | PomGeneExRNA | 2442
Substance quantification evidence | fission_yeast_phenotype | 1115
Traceable Author Statement | PSI-MOD | 1
Traceable Author Statement | PomBase family or domain | 5
Traceable Author Statement | biological_process | 144
Traceable Author Statement | cellular_component | 99
Traceable Author Statement | molecular_function | 137
Traceable Author Statement | sequence | 2
Western blot assay | fission_yeast_phenotype | 4150
Western blot evidence | PomGeneExProt | 50
cell growth assay evidence | fission_yeast_phenotype | 32037
competitive growth assay evidence | fission_yeast_phenotype | 1428
experimental evidence | PSI-MOD | 8141
experimental evidence | PomGeneExProt | 1
experimental evidence | PomGeneExRNA | 198
experimental evidence | gene_ex | 20120
experimental phenotypic evidence | fission_yeast_phenotype | 493
expression microarray evidence | PomGeneExRNA | 3359
fusion protein localization evidence | PomGeneExProt | 11
gel electrophoresis evidence | fission_yeast_phenotype | 2417
high throughput nucleotide sequencing assay evidence | fission_yeast_phenotype | 206
immunofluorescence evidence | PomGeneExProt | 6
in situ hybridization assay evidence | gene_ex | 14
in situ hybridization evidence used in manual assertion | PomGeneExRNA | 3
mass spectrometry evidence | PSI-MOD | 3202
mass spectrometry evidence | PomGeneExProt | 614
mass spectrometry evidence | gene_ex | 13682
northern assay evidence used in manual assertion | PomGeneExProt | 5
northern assay evidence used in manual assertion | PomGeneExRNA | 795
protein expression level evidence based on western blot used in manual assertion | gene_ex | 2
quantitative PCR | PomGeneExProt | 3
quantitative PCR | PomGeneExRNA | 101
quantitative PCR | fission_yeast_phenotype | 768
quantitative polymerase chain reaction evidence used in manual assertion | PomGeneExRNA | 8
reporter gene assay evidence | PomGeneExProt | 134
reporter gene assay evidence | PomGeneExRNA | 12
reporter gene assay evidence | fission_yeast_phenotype | 2758
reverse transcription polymerase chain reaction transcription evidence | PomGeneExRNA | 60
ribosome profiling evidence | PomGeneExRD | 725
sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | PomGeneExProt | 2
sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | fission_yeast_phenotype | 22
transcript expression level evidence | PomGeneExRNA | 16
transcript expression level evidence | fission_yeast_phenotype | 3763
tryptic phosphopeptide mapping assay evidence used in automatic assertion | PSI-MOD | 34008
tryptic phosphopeptide mapping assay evidence used in automatic assertion | fission_yeast_phenotype | 149
western blot evidence used in manual assertion | PomGeneExProt | 437
western blot evidence used in manual assertion | PomGeneExRNA | 13
western blot evidence used in manual assertion | fission_yeast_phenotype | 147
(125 rows)
total:
count
--------
329301
(1 row)
counts of annotation from Canto, by type:
count | cv_name
-------+------------------------------------
3 | PomGeneExRNA
1271 | PSI-MOD
2620 | molecular_function
3021 | cellular_component
3634 | biological_process
32174 | PomBase annotation extension terms
36732 | fission_yeast_phenotype
(7 rows)
total
-------
79455
(1 row)