counts of all annotation by type: count | cv_name -------+-------------------------------------- 6 | external_link 22 | ex_tools 27 | cat_act 28 | pathway 90 | m_f_g 189 | subunit_composition 237 | genome_org 413 | misc 450 | complementation 725 | PomGeneExRD 830 | EC numbers 958 | sequence 963 | name_description 1277 | PomGeneExProt 1795 | warning 1869 | PomBase family or domain 4556 | mondo 5134 | PomBase gene characterisation status 7186 | PomGeneExRNA 12056 | biological_process 13776 | molecular_function 17575 | cellular_component 25104 | species_dist 33818 | gene_ex 48544 | PSI-MOD 56281 | PomBase gene products 96529 | fission_yeast_phenotype (27 rows) annotation counts by evidence code and cv type, sorted by cv name: ev_code | cv_name | count ----------------------------------------------------------------------------------+--------------------------+------- Inferred from Direct Assay | PSI-MOD | 3029 Inferred from Mutant Phenotype | PSI-MOD | 1 Inferred from Sequence Model | PSI-MOD | 2 Inferred from Sequence or Structural Similarity | PSI-MOD | 101 Traceable Author Statement | PSI-MOD | 1 experimental evidence | PSI-MOD | 8141 mass spectrometry evidence | PSI-MOD | 3202 tryptic phosphopeptide mapping assay evidence used in automatic assertion | PSI-MOD | 34008 Inferred from Sequence or Structural Similarity | PomBase family or domain | 5 Traceable Author Statement | PomBase family or domain | 5 Microscopy | PomGeneExProt | 5 Western blot evidence | PomGeneExProt | 53 experimental evidence | PomGeneExProt | 1 fusion protein localization evidence | PomGeneExProt | 11 immunofluorescence evidence | PomGeneExProt | 6 mass spectrometry evidence | PomGeneExProt | 614 northern assay evidence used in manual assertion | PomGeneExProt | 5 quantitative PCR | PomGeneExProt | 3 reporter gene assay evidence | PomGeneExProt | 134 sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | PomGeneExProt | 2 western blot evidence used in manual assertion | PomGeneExProt | 437 ribosome profiling evidence | PomGeneExRD | 725 Northern assay evidence | PomGeneExRNA | 105 RNA protection assay evidence | PomGeneExRNA | 58 RNA-sequencing evidence | PomGeneExRNA | 2442 experimental evidence | PomGeneExRNA | 198 expression microarray evidence | PomGeneExRNA | 3359 in situ hybridization evidence used in manual assertion | PomGeneExRNA | 3 northern assay evidence used in manual assertion | PomGeneExRNA | 795 quantitative PCR | PomGeneExRNA | 101 quantitative polymerase chain reaction evidence used in manual assertion | PomGeneExRNA | 8 reporter gene assay evidence | PomGeneExRNA | 12 reverse transcription polymerase chain reaction transcription evidence | PomGeneExRNA | 60 transcript expression level evidence | PomGeneExRNA | 16 western blot evidence used in manual assertion | PomGeneExRNA | 13 Inferred by Curator | biological_process | 1123 Inferred from Biological aspect of Ancestor | biological_process | 1590 Inferred from Direct Assay | biological_process | 720 Inferred from Electronic Annotation | biological_process | 452 Inferred from Experiment | biological_process | 324 Inferred from Expression Pattern | biological_process | 20 Inferred from Genetic Interaction | biological_process | 613 Inferred from Mutant Phenotype | biological_process | 3820 Inferred from Physical Interaction | biological_process | 110 Inferred from Sequence Model | biological_process | 178 Inferred from Sequence Orthology | biological_process | 2046 Inferred from Sequence or Structural Similarity | biological_process | 550 Inferred from high throughput direct assay | biological_process | 17 Non-traceable Author Statement | biological_process | 350 Traceable Author Statement | biological_process | 143 Inferred by Curator | cellular_component | 521 Inferred from Biological aspect of Ancestor | cellular_component | 1021 Inferred from Direct Assay | cellular_component | 5420 Inferred from Electronic Annotation | cellular_component | 873 Inferred from Experiment | cellular_component | 255 Inferred from Genetic Interaction | cellular_component | 46 Inferred from Mutant Phenotype | cellular_component | 53 Inferred from Physical Interaction | cellular_component | 269 Inferred from Sequence Model | cellular_component | 96 Inferred from Sequence Orthology | cellular_component | 1500 Inferred from Sequence or Structural Similarity | cellular_component | 396 Inferred from high throughput direct assay | cellular_component | 6855 Non-traceable Author Statement | cellular_component | 171 Traceable Author Statement | cellular_component | 99 Non-traceable Author Statement | complementation | 1 Chromatin immunoprecipitation experiment | fission_yeast_phenotype | 1844 Chromatography evidence | fission_yeast_phenotype | 69 Co-immunoprecipitation experiment | fission_yeast_phenotype | 947 Electrophoretic mobility shift assay data | fission_yeast_phenotype | 173 Enzyme assay data | fission_yeast_phenotype | 1850 Epitope-tagged protein immunolocalization experiment data | fission_yeast_phenotype | 45 Flow cytometry data | fission_yeast_phenotype | 2157 Immunolocalization experiment data | fission_yeast_phenotype | 23 Microscopy | fission_yeast_phenotype | 37083 Northern assay evidence | fission_yeast_phenotype | 118 Other | fission_yeast_phenotype | 1820 Other direct assay | fission_yeast_phenotype | 9 Particle size and count assay | fission_yeast_phenotype | 33 Plasmid maintenance assay evidence | fission_yeast_phenotype | 81 Substance quantification evidence | fission_yeast_phenotype | 1119 Western blot assay | fission_yeast_phenotype | 4164 cell growth assay evidence | fission_yeast_phenotype | 32166 competitive growth assay evidence | fission_yeast_phenotype | 1428 experimental phenotypic evidence | fission_yeast_phenotype | 493 gel electrophoresis evidence | fission_yeast_phenotype | 2431 high throughput nucleotide sequencing assay evidence | fission_yeast_phenotype | 206 microscopy evidence used in manual assertion | fission_yeast_phenotype | 659 quantitative PCR | fission_yeast_phenotype | 767 reporter gene assay evidence | fission_yeast_phenotype | 2763 sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | fission_yeast_phenotype | 22 transcript expression level evidence | fission_yeast_phenotype | 3763 tryptic phosphopeptide mapping assay evidence used in automatic assertion | fission_yeast_phenotype | 149 western blot evidence used in manual assertion | fission_yeast_phenotype | 147 experimental evidence | gene_ex | 20120 in situ hybridization assay evidence | gene_ex | 14 mass spectrometry evidence | gene_ex | 13682 protein expression level evidence based on western blot used in manual assertion | gene_ex | 2 Inferred from Sequence or Structural Similarity | genome_org | 13 Inferred from Sequence or Structural Similarity | m_f_g | 42 Inferred from Direct Assay | misc | 1 Inferred from Mutant Phenotype | misc | 4 Inferred from Physical Interaction | misc | 2 Inferred from Sequence or Structural Similarity | misc | 1 Inferred by Curator | molecular_function | 135 Inferred from Biological aspect of Ancestor | molecular_function | 932 Inferred from Direct Assay | molecular_function | 1944 Inferred from Electronic Annotation | molecular_function | 1888 Inferred from Experiment | molecular_function | 532 Inferred from Genetic Interaction | molecular_function | 130 Inferred from Key Residues | molecular_function | 1 Inferred from Mutant Phenotype | molecular_function | 834 Inferred from Physical Interaction | molecular_function | 2550 Inferred from Sequence Model | molecular_function | 1188 Inferred from Sequence Orthology | molecular_function | 1343 Inferred from Sequence or Structural Similarity | molecular_function | 462 Inferred from high throughput direct assay | molecular_function | 17 Inferred from high throughput mutant phenotype | molecular_function | 1535 Non-traceable Author Statement | molecular_function | 149 Traceable Author Statement | molecular_function | 136 Inferred from Direct Assay | sequence | 2 Inferred from Mutant Phenotype | sequence | 8 Inferred from Sequence or Structural Similarity | sequence | 355 Traceable Author Statement | sequence | 2 Inferred from Direct Assay | subunit_composition | 4 Inferred from Sequence or Structural Similarity | subunit_composition | 1 Inferred from Sequence or Structural Similarity | warning | 101 (126 rows) annotation counts by evidence code and cv type, sorted by count: ev_code | cv_name | count ----------------------------------------------------------------------------------+--------------------------+------- Traceable Author Statement | PSI-MOD | 1 Inferred from Mutant Phenotype | PSI-MOD | 1 Inferred from Sequence or Structural Similarity | subunit_composition | 1 Inferred from Key Residues | molecular_function | 1 Inferred from Direct Assay | misc | 1 Non-traceable Author Statement | complementation | 1 Inferred from Sequence or Structural Similarity | misc | 1 experimental evidence | PomGeneExProt | 1 Inferred from Sequence Model | PSI-MOD | 2 Inferred from Direct Assay | sequence | 2 sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | PomGeneExProt | 2 Traceable Author Statement | sequence | 2 protein expression level evidence based on western blot used in manual assertion | gene_ex | 2 Inferred from Physical Interaction | misc | 2 quantitative PCR | PomGeneExProt | 3 in situ hybridization evidence used in manual assertion | PomGeneExRNA | 3 Inferred from Mutant Phenotype | misc | 4 Inferred from Direct Assay | subunit_composition | 4 Inferred from Sequence or Structural Similarity | PomBase family or domain | 5 Traceable Author Statement | PomBase family or domain | 5 northern assay evidence used in manual assertion | PomGeneExProt | 5 Microscopy | PomGeneExProt | 5 immunofluorescence evidence | PomGeneExProt | 6 quantitative polymerase chain reaction evidence used in manual assertion | PomGeneExRNA | 8 Inferred from Mutant Phenotype | sequence | 8 Other direct assay | fission_yeast_phenotype | 9 fusion protein localization evidence | PomGeneExProt | 11 reporter gene assay evidence | PomGeneExRNA | 12 western blot evidence used in manual assertion | PomGeneExRNA | 13 Inferred from Sequence or Structural Similarity | genome_org | 13 in situ hybridization assay evidence | gene_ex | 14 transcript expression level evidence | PomGeneExRNA | 16 Inferred from high throughput direct assay | biological_process | 17 Inferred from high throughput direct assay | molecular_function | 17 Inferred from Expression Pattern | biological_process | 20 sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | fission_yeast_phenotype | 22 Immunolocalization experiment data | fission_yeast_phenotype | 23 Particle size and count assay | fission_yeast_phenotype | 33 Inferred from Sequence or Structural Similarity | m_f_g | 42 Epitope-tagged protein immunolocalization experiment data | fission_yeast_phenotype | 45 Inferred from Genetic Interaction | cellular_component | 46 Inferred from Mutant Phenotype | cellular_component | 53 Western blot evidence | PomGeneExProt | 53 RNA protection assay evidence | PomGeneExRNA | 58 reverse transcription polymerase chain reaction transcription evidence | PomGeneExRNA | 60 Chromatography evidence | fission_yeast_phenotype | 69 Plasmid maintenance assay evidence | fission_yeast_phenotype | 81 Inferred from Sequence Model | cellular_component | 96 Traceable Author Statement | cellular_component | 99 Inferred from Sequence or Structural Similarity | warning | 101 Inferred from Sequence or Structural Similarity | PSI-MOD | 101 quantitative PCR | PomGeneExRNA | 101 Northern assay evidence | PomGeneExRNA | 105 Inferred from Physical Interaction | biological_process | 110 Northern assay evidence | fission_yeast_phenotype | 118 Inferred from Genetic Interaction | molecular_function | 130 reporter gene assay evidence | PomGeneExProt | 134 Inferred by Curator | molecular_function | 135 Traceable Author Statement | molecular_function | 136 Traceable Author Statement | biological_process | 143 western blot evidence used in manual assertion | fission_yeast_phenotype | 147 Non-traceable Author Statement | molecular_function | 149 tryptic phosphopeptide mapping assay evidence used in automatic assertion | fission_yeast_phenotype | 149 Non-traceable Author Statement | cellular_component | 171 Electrophoretic mobility shift assay data | fission_yeast_phenotype | 173 Inferred from Sequence Model | biological_process | 178 experimental evidence | PomGeneExRNA | 198 high throughput nucleotide sequencing assay evidence | fission_yeast_phenotype | 206 Inferred from Experiment | cellular_component | 255 Inferred from Physical Interaction | cellular_component | 269 Inferred from Experiment | biological_process | 324 Non-traceable Author Statement | biological_process | 350 Inferred from Sequence or Structural Similarity | sequence | 355 Inferred from Sequence or Structural Similarity | cellular_component | 396 western blot evidence used in manual assertion | PomGeneExProt | 437 Inferred from Electronic Annotation | biological_process | 452 Inferred from Sequence or Structural Similarity | molecular_function | 462 experimental phenotypic evidence | fission_yeast_phenotype | 493 Inferred by Curator | cellular_component | 521 Inferred from Experiment | molecular_function | 532 Inferred from Sequence or Structural Similarity | biological_process | 550 Inferred from Genetic Interaction | biological_process | 613 mass spectrometry evidence | PomGeneExProt | 614 microscopy evidence used in manual assertion | fission_yeast_phenotype | 659 Inferred from Direct Assay | biological_process | 720 ribosome profiling evidence | PomGeneExRD | 725 quantitative PCR | fission_yeast_phenotype | 767 northern assay evidence used in manual assertion | PomGeneExRNA | 795 Inferred from Mutant Phenotype | molecular_function | 834 Inferred from Electronic Annotation | cellular_component | 873 Inferred from Biological aspect of Ancestor | molecular_function | 932 Co-immunoprecipitation experiment | fission_yeast_phenotype | 947 Inferred from Biological aspect of Ancestor | cellular_component | 1021 Substance quantification evidence | fission_yeast_phenotype | 1119 Inferred by Curator | biological_process | 1123 Inferred from Sequence Model | molecular_function | 1188 Inferred from Sequence Orthology | molecular_function | 1343 competitive growth assay evidence | fission_yeast_phenotype | 1428 Inferred from Sequence Orthology | cellular_component | 1500 Inferred from high throughput mutant phenotype | molecular_function | 1535 Inferred from Biological aspect of Ancestor | biological_process | 1590 Other | fission_yeast_phenotype | 1820 Chromatin immunoprecipitation experiment | fission_yeast_phenotype | 1844 Enzyme assay data | fission_yeast_phenotype | 1850 Inferred from Electronic Annotation | molecular_function | 1888 Inferred from Direct Assay | molecular_function | 1944 Inferred from Sequence Orthology | biological_process | 2046 Flow cytometry data | fission_yeast_phenotype | 2157 gel electrophoresis evidence | fission_yeast_phenotype | 2431 RNA-sequencing evidence | PomGeneExRNA | 2442 Inferred from Physical Interaction | molecular_function | 2550 reporter gene assay evidence | fission_yeast_phenotype | 2763 Inferred from Direct Assay | PSI-MOD | 3029 mass spectrometry evidence | PSI-MOD | 3202 expression microarray evidence | PomGeneExRNA | 3359 transcript expression level evidence | fission_yeast_phenotype | 3763 Inferred from Mutant Phenotype | biological_process | 3820 Western blot assay | fission_yeast_phenotype | 4164 Inferred from Direct Assay | cellular_component | 5420 Inferred from high throughput direct assay | cellular_component | 6855 experimental evidence | PSI-MOD | 8141 mass spectrometry evidence | gene_ex | 13682 experimental evidence | gene_ex | 20120 cell growth assay evidence | fission_yeast_phenotype | 32166 tryptic phosphopeptide mapping assay evidence used in automatic assertion | PSI-MOD | 34008 Microscopy | fission_yeast_phenotype | 37083 (126 rows) annotation counts by evidence code and cv type, sorted by cv evidence code: ev_code | cv_name | count ----------------------------------------------------------------------------------+--------------------------+------- Chromatin immunoprecipitation experiment | fission_yeast_phenotype | 1844 Chromatography evidence | fission_yeast_phenotype | 69 Co-immunoprecipitation experiment | fission_yeast_phenotype | 947 Electrophoretic mobility shift assay data | fission_yeast_phenotype | 173 Enzyme assay data | fission_yeast_phenotype | 1850 Epitope-tagged protein immunolocalization experiment data | fission_yeast_phenotype | 45 Flow cytometry data | fission_yeast_phenotype | 2157 Immunolocalization experiment data | fission_yeast_phenotype | 23 Inferred by Curator | biological_process | 1123 Inferred by Curator | cellular_component | 521 Inferred by Curator | molecular_function | 135 Inferred from Biological aspect of Ancestor | biological_process | 1590 Inferred from Biological aspect of Ancestor | cellular_component | 1021 Inferred from Biological aspect of Ancestor | molecular_function | 932 Inferred from Direct Assay | PSI-MOD | 3029 Inferred from Direct Assay | biological_process | 720 Inferred from Direct Assay | cellular_component | 5420 Inferred from Direct Assay | misc | 1 Inferred from Direct Assay | molecular_function | 1944 Inferred from Direct Assay | sequence | 2 Inferred from Direct Assay | subunit_composition | 4 Inferred from Electronic Annotation | biological_process | 452 Inferred from Electronic Annotation | cellular_component | 873 Inferred from Electronic Annotation | molecular_function | 1888 Inferred from Experiment | biological_process | 324 Inferred from Experiment | cellular_component | 255 Inferred from Experiment | molecular_function | 532 Inferred from Expression Pattern | biological_process | 20 Inferred from Genetic Interaction | biological_process | 613 Inferred from Genetic Interaction | cellular_component | 46 Inferred from Genetic Interaction | molecular_function | 130 Inferred from Key Residues | molecular_function | 1 Inferred from Mutant Phenotype | PSI-MOD | 1 Inferred from Mutant Phenotype | biological_process | 3820 Inferred from Mutant Phenotype | cellular_component | 53 Inferred from Mutant Phenotype | misc | 4 Inferred from Mutant Phenotype | molecular_function | 834 Inferred from Mutant Phenotype | sequence | 8 Inferred from Physical Interaction | biological_process | 110 Inferred from Physical Interaction | cellular_component | 269 Inferred from Physical Interaction | misc | 2 Inferred from Physical Interaction | molecular_function | 2550 Inferred from Sequence Model | PSI-MOD | 2 Inferred from Sequence Model | biological_process | 178 Inferred from Sequence Model | cellular_component | 96 Inferred from Sequence Model | molecular_function | 1188 Inferred from Sequence Orthology | biological_process | 2046 Inferred from Sequence Orthology | cellular_component | 1500 Inferred from Sequence Orthology | molecular_function | 1343 Inferred from Sequence or Structural Similarity | PSI-MOD | 101 Inferred from Sequence or Structural Similarity | PomBase family or domain | 5 Inferred from Sequence or Structural Similarity | biological_process | 550 Inferred from Sequence or Structural Similarity | cellular_component | 396 Inferred from Sequence or Structural Similarity | genome_org | 13 Inferred from Sequence or Structural Similarity | m_f_g | 42 Inferred from Sequence or Structural Similarity | misc | 1 Inferred from Sequence or Structural Similarity | molecular_function | 462 Inferred from Sequence or Structural Similarity | sequence | 355 Inferred from Sequence or Structural Similarity | subunit_composition | 1 Inferred from Sequence or Structural Similarity | warning | 101 Inferred from high throughput direct assay | biological_process | 17 Inferred from high throughput direct assay | cellular_component | 6855 Inferred from high throughput direct assay | molecular_function | 17 Inferred from high throughput mutant phenotype | molecular_function | 1535 Microscopy | PomGeneExProt | 5 Microscopy | fission_yeast_phenotype | 37083 Non-traceable Author Statement | biological_process | 350 Non-traceable Author Statement | cellular_component | 171 Non-traceable Author Statement | complementation | 1 Non-traceable Author Statement | molecular_function | 149 Northern assay evidence | PomGeneExRNA | 105 Northern assay evidence | fission_yeast_phenotype | 118 Other | fission_yeast_phenotype | 1820 Other direct assay | fission_yeast_phenotype | 9 Particle size and count assay | fission_yeast_phenotype | 33 Plasmid maintenance assay evidence | fission_yeast_phenotype | 81 RNA protection assay evidence | PomGeneExRNA | 58 RNA-sequencing evidence | PomGeneExRNA | 2442 Substance quantification evidence | fission_yeast_phenotype | 1119 Traceable Author Statement | PSI-MOD | 1 Traceable Author Statement | PomBase family or domain | 5 Traceable Author Statement | biological_process | 143 Traceable Author Statement | cellular_component | 99 Traceable Author Statement | molecular_function | 136 Traceable Author Statement | sequence | 2 Western blot assay | fission_yeast_phenotype | 4164 Western blot evidence | PomGeneExProt | 53 cell growth assay evidence | fission_yeast_phenotype | 32166 competitive growth assay evidence | fission_yeast_phenotype | 1428 experimental evidence | PSI-MOD | 8141 experimental evidence | PomGeneExProt | 1 experimental evidence | PomGeneExRNA | 198 experimental evidence | gene_ex | 20120 experimental phenotypic evidence | fission_yeast_phenotype | 493 expression microarray evidence | PomGeneExRNA | 3359 fusion protein localization evidence | PomGeneExProt | 11 gel electrophoresis evidence | fission_yeast_phenotype | 2431 high throughput nucleotide sequencing assay evidence | fission_yeast_phenotype | 206 immunofluorescence evidence | PomGeneExProt | 6 in situ hybridization assay evidence | gene_ex | 14 in situ hybridization evidence used in manual assertion | PomGeneExRNA | 3 mass spectrometry evidence | PSI-MOD | 3202 mass spectrometry evidence | PomGeneExProt | 614 mass spectrometry evidence | gene_ex | 13682 microscopy evidence used in manual assertion | fission_yeast_phenotype | 659 northern assay evidence used in manual assertion | PomGeneExProt | 5 northern assay evidence used in manual assertion | PomGeneExRNA | 795 protein expression level evidence based on western blot used in manual assertion | gene_ex | 2 quantitative PCR | PomGeneExProt | 3 quantitative PCR | PomGeneExRNA | 101 quantitative PCR | fission_yeast_phenotype | 767 quantitative polymerase chain reaction evidence used in manual assertion | PomGeneExRNA | 8 reporter gene assay evidence | PomGeneExProt | 134 reporter gene assay evidence | PomGeneExRNA | 12 reporter gene assay evidence | fission_yeast_phenotype | 2763 reverse transcription polymerase chain reaction transcription evidence | PomGeneExRNA | 60 ribosome profiling evidence | PomGeneExRD | 725 sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | PomGeneExProt | 2 sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | fission_yeast_phenotype | 22 transcript expression level evidence | PomGeneExRNA | 16 transcript expression level evidence | fission_yeast_phenotype | 3763 tryptic phosphopeptide mapping assay evidence used in automatic assertion | PSI-MOD | 34008 tryptic phosphopeptide mapping assay evidence used in automatic assertion | fission_yeast_phenotype | 149 western blot evidence used in manual assertion | PomGeneExProt | 437 western blot evidence used in manual assertion | PomGeneExRNA | 13 western blot evidence used in manual assertion | fission_yeast_phenotype | 147 (126 rows) total: count -------- 330438 (1 row) counts of annotation from Canto, by type: count | cv_name -------+------------------------------------ 3 | PomGeneExRNA 1274 | PSI-MOD 2616 | molecular_function 3031 | cellular_component 3633 | biological_process 32388 | PomBase annotation extension terms 36892 | fission_yeast_phenotype (7 rows) total ------- 79837 (1 row)