counts of all annotation by type: count | cv_name -------+-------------------------------------- 6 | external_link 22 | ex_tools 27 | cat_act 28 | pathway 90 | m_f_g 190 | subunit_composition 244 | genome_org 421 | misc 452 | complementation 734 | PomGeneExRD 832 | EC numbers 958 | sequence 969 | name_description 1289 | PomGeneExProt 1810 | warning 1874 | PomBase family or domain 4077 | kegg_pombe_pathway 4585 | mondo 5148 | PomBase gene characterisation status 8608 | PomGeneExRNA 11972 | biological_process 13769 | molecular_function 17596 | cellular_component 25167 | species_dist 33818 | gene_ex 48600 | PSI-MOD 56438 | PomBase gene products 97183 | fission_yeast_phenotype (28 rows) annotation counts by evidence code and cv type, sorted by cv name: ev_code | cv_name | count ----------------------------------------------------------------------------------+--------------------------+------- Inferred from Direct Assay | PSI-MOD | 3085 Inferred from Mutant Phenotype | PSI-MOD | 1 Inferred from Sequence Model | PSI-MOD | 2 Inferred from Sequence or Structural Similarity | PSI-MOD | 101 Traceable Author Statement | PSI-MOD | 1 experimental evidence | PSI-MOD | 8141 mass spectrometry evidence | PSI-MOD | 3202 tryptic phosphopeptide mapping assay evidence used in automatic assertion | PSI-MOD | 34008 Inferred from Sequence or Structural Similarity | PomBase family or domain | 5 Traceable Author Statement | PomBase family or domain | 5 Microscopy | PomGeneExProt | 5 Western blot evidence | PomGeneExProt | 59 experimental evidence | PomGeneExProt | 1 fusion protein localization evidence | PomGeneExProt | 11 immunofluorescence evidence | PomGeneExProt | 6 mass spectrometry evidence | PomGeneExProt | 614 northern assay evidence used in manual assertion | PomGeneExProt | 6 quantitative PCR | PomGeneExProt | 3 reporter gene assay evidence | PomGeneExProt | 134 sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | PomGeneExProt | 2 western blot evidence used in manual assertion | PomGeneExProt | 442 ribosome profiling evidence | PomGeneExRD | 734 Northern assay evidence | PomGeneExRNA | 106 RNA protection assay evidence | PomGeneExRNA | 58 RNA-sequencing evidence | PomGeneExRNA | 3819 experimental evidence | PomGeneExRNA | 198 expression microarray evidence | PomGeneExRNA | 3359 in situ hybridization evidence used in manual assertion | PomGeneExRNA | 3 northern assay evidence used in manual assertion | PomGeneExRNA | 830 quantitative PCR | PomGeneExRNA | 109 quantitative polymerase chain reaction evidence used in manual assertion | PomGeneExRNA | 8 reporter gene assay evidence | PomGeneExRNA | 12 reverse transcription polymerase chain reaction transcription evidence | PomGeneExRNA | 60 transcript expression level evidence | PomGeneExRNA | 16 western blot evidence used in manual assertion | PomGeneExRNA | 13 Inferred by Curator | biological_process | 1121 Inferred from Biological aspect of Ancestor | biological_process | 1490 Inferred from Direct Assay | biological_process | 721 Inferred from Electronic Annotation | biological_process | 467 Inferred from Experiment | biological_process | 328 Inferred from Expression Pattern | biological_process | 18 Inferred from Genetic Interaction | biological_process | 611 Inferred from Mutant Phenotype | biological_process | 3839 Inferred from Physical Interaction | biological_process | 108 Inferred from Sequence Model | biological_process | 171 Inferred from Sequence Orthology | biological_process | 2040 Inferred from Sequence or Structural Similarity | biological_process | 551 Inferred from high throughput direct assay | biological_process | 17 Non-traceable Author Statement | biological_process | 351 Traceable Author Statement | biological_process | 139 Inferred by Curator | cellular_component | 521 Inferred from Biological aspect of Ancestor | cellular_component | 1009 Inferred from Direct Assay | cellular_component | 5436 Inferred from Electronic Annotation | cellular_component | 880 Inferred from Experiment | cellular_component | 268 Inferred from Genetic Interaction | cellular_component | 46 Inferred from Mutant Phenotype | cellular_component | 55 Inferred from Physical Interaction | cellular_component | 274 Inferred from Sequence Model | cellular_component | 95 Inferred from Sequence Orthology | cellular_component | 1497 Inferred from Sequence or Structural Similarity | cellular_component | 397 Inferred from high throughput direct assay | cellular_component | 6848 Non-traceable Author Statement | cellular_component | 171 Traceable Author Statement | cellular_component | 99 Non-traceable Author Statement | complementation | 1 Chromatin immunoprecipitation experiment | fission_yeast_phenotype | 1868 Chromatography evidence | fission_yeast_phenotype | 69 Co-immunoprecipitation experiment | fission_yeast_phenotype | 953 Electrophoretic mobility shift assay data | fission_yeast_phenotype | 173 Enzyme assay data | fission_yeast_phenotype | 1864 Epitope-tagged protein immunolocalization experiment data | fission_yeast_phenotype | 45 Flow cytometry data | fission_yeast_phenotype | 2160 Immunolocalization experiment data | fission_yeast_phenotype | 23 Microscopy | fission_yeast_phenotype | 37314 Northern assay evidence | fission_yeast_phenotype | 118 Other | fission_yeast_phenotype | 1860 Other direct assay | fission_yeast_phenotype | 9 Particle size and count assay | fission_yeast_phenotype | 33 Plasmid maintenance assay evidence | fission_yeast_phenotype | 81 Substance quantification | fission_yeast_phenotype | 1 Substance quantification evidence | fission_yeast_phenotype | 1124 Western blot assay | fission_yeast_phenotype | 4215 cell growth assay evidence | fission_yeast_phenotype | 32394 competitive growth assay evidence | fission_yeast_phenotype | 1428 experimental phenotypic evidence | fission_yeast_phenotype | 493 gel electrophoresis evidence | fission_yeast_phenotype | 2448 high throughput nucleotide sequencing assay evidence | fission_yeast_phenotype | 206 microscopy evidence used in manual assertion | fission_yeast_phenotype | 659 quantitative PCR | fission_yeast_phenotype | 778 reporter gene assay evidence | fission_yeast_phenotype | 2772 sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | fission_yeast_phenotype | 22 transcript expression level evidence | fission_yeast_phenotype | 3777 tryptic phosphopeptide mapping assay evidence used in automatic assertion | fission_yeast_phenotype | 149 western blot evidence used in manual assertion | fission_yeast_phenotype | 147 experimental evidence | gene_ex | 20120 in situ hybridization assay evidence | gene_ex | 14 mass spectrometry evidence | gene_ex | 13682 protein expression level evidence based on western blot used in manual assertion | gene_ex | 2 Inferred from Sequence or Structural Similarity | genome_org | 13 Inferred from Sequence or Structural Similarity | m_f_g | 42 Inferred from Direct Assay | misc | 1 Inferred from Mutant Phenotype | misc | 4 Inferred from Physical Interaction | misc | 2 Inferred from Sequence or Structural Similarity | misc | 1 Inferred by Curator | molecular_function | 132 Inferred from Biological aspect of Ancestor | molecular_function | 912 Inferred from Direct Assay | molecular_function | 1954 Inferred from Electronic Annotation | molecular_function | 1894 Inferred from Experiment | molecular_function | 544 Inferred from Genetic Interaction | molecular_function | 131 Inferred from Key Residues | molecular_function | 1 Inferred from Mutant Phenotype | molecular_function | 834 Inferred from Physical Interaction | molecular_function | 2568 Inferred from Sequence Model | molecular_function | 1174 Inferred from Sequence Orthology | molecular_function | 1335 Inferred from Sequence or Structural Similarity | molecular_function | 466 Inferred from high throughput direct assay | molecular_function | 17 Inferred from high throughput mutant phenotype | molecular_function | 1535 Non-traceable Author Statement | molecular_function | 136 Traceable Author Statement | molecular_function | 136 Inferred from Direct Assay | sequence | 2 Inferred from Mutant Phenotype | sequence | 8 Inferred from Sequence or Structural Similarity | sequence | 355 Traceable Author Statement | sequence | 2 Inferred from Direct Assay | subunit_composition | 4 Inferred from Sequence or Structural Similarity | subunit_composition | 1 Inferred from Sequence or Structural Similarity | warning | 101 (127 rows) annotation counts by evidence code and cv type, sorted by count: ev_code | cv_name | count ----------------------------------------------------------------------------------+--------------------------+------- Inferred from Direct Assay | misc | 1 Inferred from Key Residues | molecular_function | 1 Inferred from Mutant Phenotype | PSI-MOD | 1 Non-traceable Author Statement | complementation | 1 Inferred from Sequence or Structural Similarity | subunit_composition | 1 Inferred from Sequence or Structural Similarity | misc | 1 Substance quantification | fission_yeast_phenotype | 1 experimental evidence | PomGeneExProt | 1 Traceable Author Statement | PSI-MOD | 1 Inferred from Sequence Model | PSI-MOD | 2 Traceable Author Statement | sequence | 2 protein expression level evidence based on western blot used in manual assertion | gene_ex | 2 Inferred from Physical Interaction | misc | 2 Inferred from Direct Assay | sequence | 2 sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | PomGeneExProt | 2 in situ hybridization evidence used in manual assertion | PomGeneExRNA | 3 quantitative PCR | PomGeneExProt | 3 Inferred from Direct Assay | subunit_composition | 4 Inferred from Mutant Phenotype | misc | 4 Microscopy | PomGeneExProt | 5 Inferred from Sequence or Structural Similarity | PomBase family or domain | 5 Traceable Author Statement | PomBase family or domain | 5 immunofluorescence evidence | PomGeneExProt | 6 northern assay evidence used in manual assertion | PomGeneExProt | 6 quantitative polymerase chain reaction evidence used in manual assertion | PomGeneExRNA | 8 Inferred from Mutant Phenotype | sequence | 8 Other direct assay | fission_yeast_phenotype | 9 fusion protein localization evidence | PomGeneExProt | 11 reporter gene assay evidence | PomGeneExRNA | 12 Inferred from Sequence or Structural Similarity | genome_org | 13 western blot evidence used in manual assertion | PomGeneExRNA | 13 in situ hybridization assay evidence | gene_ex | 14 transcript expression level evidence | PomGeneExRNA | 16 Inferred from high throughput direct assay | molecular_function | 17 Inferred from high throughput direct assay | biological_process | 17 Inferred from Expression Pattern | biological_process | 18 sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | fission_yeast_phenotype | 22 Immunolocalization experiment data | fission_yeast_phenotype | 23 Particle size and count assay | fission_yeast_phenotype | 33 Inferred from Sequence or Structural Similarity | m_f_g | 42 Epitope-tagged protein immunolocalization experiment data | fission_yeast_phenotype | 45 Inferred from Genetic Interaction | cellular_component | 46 Inferred from Mutant Phenotype | cellular_component | 55 RNA protection assay evidence | PomGeneExRNA | 58 Western blot evidence | PomGeneExProt | 59 reverse transcription polymerase chain reaction transcription evidence | PomGeneExRNA | 60 Chromatography evidence | fission_yeast_phenotype | 69 Plasmid maintenance assay evidence | fission_yeast_phenotype | 81 Inferred from Sequence Model | cellular_component | 95 Traceable Author Statement | cellular_component | 99 Inferred from Sequence or Structural Similarity | PSI-MOD | 101 Inferred from Sequence or Structural Similarity | warning | 101 Northern assay evidence | PomGeneExRNA | 106 Inferred from Physical Interaction | biological_process | 108 quantitative PCR | PomGeneExRNA | 109 Northern assay evidence | fission_yeast_phenotype | 118 Inferred from Genetic Interaction | molecular_function | 131 Inferred by Curator | molecular_function | 132 reporter gene assay evidence | PomGeneExProt | 134 Non-traceable Author Statement | molecular_function | 136 Traceable Author Statement | molecular_function | 136 Traceable Author Statement | biological_process | 139 western blot evidence used in manual assertion | fission_yeast_phenotype | 147 tryptic phosphopeptide mapping assay evidence used in automatic assertion | fission_yeast_phenotype | 149 Non-traceable Author Statement | cellular_component | 171 Inferred from Sequence Model | biological_process | 171 Electrophoretic mobility shift assay data | fission_yeast_phenotype | 173 experimental evidence | PomGeneExRNA | 198 high throughput nucleotide sequencing assay evidence | fission_yeast_phenotype | 206 Inferred from Experiment | cellular_component | 268 Inferred from Physical Interaction | cellular_component | 274 Inferred from Experiment | biological_process | 328 Non-traceable Author Statement | biological_process | 351 Inferred from Sequence or Structural Similarity | sequence | 355 Inferred from Sequence or Structural Similarity | cellular_component | 397 western blot evidence used in manual assertion | PomGeneExProt | 442 Inferred from Sequence or Structural Similarity | molecular_function | 466 Inferred from Electronic Annotation | biological_process | 467 experimental phenotypic evidence | fission_yeast_phenotype | 493 Inferred by Curator | cellular_component | 521 Inferred from Experiment | molecular_function | 544 Inferred from Sequence or Structural Similarity | biological_process | 551 Inferred from Genetic Interaction | biological_process | 611 mass spectrometry evidence | PomGeneExProt | 614 microscopy evidence used in manual assertion | fission_yeast_phenotype | 659 Inferred from Direct Assay | biological_process | 721 ribosome profiling evidence | PomGeneExRD | 734 quantitative PCR | fission_yeast_phenotype | 778 northern assay evidence used in manual assertion | PomGeneExRNA | 830 Inferred from Mutant Phenotype | molecular_function | 834 Inferred from Electronic Annotation | cellular_component | 880 Inferred from Biological aspect of Ancestor | molecular_function | 912 Co-immunoprecipitation experiment | fission_yeast_phenotype | 953 Inferred from Biological aspect of Ancestor | cellular_component | 1009 Inferred by Curator | biological_process | 1121 Substance quantification evidence | fission_yeast_phenotype | 1124 Inferred from Sequence Model | molecular_function | 1174 Inferred from Sequence Orthology | molecular_function | 1335 competitive growth assay evidence | fission_yeast_phenotype | 1428 Inferred from Biological aspect of Ancestor | biological_process | 1490 Inferred from Sequence Orthology | cellular_component | 1497 Inferred from high throughput mutant phenotype | molecular_function | 1535 Other | fission_yeast_phenotype | 1860 Enzyme assay data | fission_yeast_phenotype | 1864 Chromatin immunoprecipitation experiment | fission_yeast_phenotype | 1868 Inferred from Electronic Annotation | molecular_function | 1894 Inferred from Direct Assay | molecular_function | 1954 Inferred from Sequence Orthology | biological_process | 2040 Flow cytometry data | fission_yeast_phenotype | 2160 gel electrophoresis evidence | fission_yeast_phenotype | 2448 Inferred from Physical Interaction | molecular_function | 2568 reporter gene assay evidence | fission_yeast_phenotype | 2772 Inferred from Direct Assay | PSI-MOD | 3085 mass spectrometry evidence | PSI-MOD | 3202 expression microarray evidence | PomGeneExRNA | 3359 transcript expression level evidence | fission_yeast_phenotype | 3777 RNA-sequencing evidence | PomGeneExRNA | 3819 Inferred from Mutant Phenotype | biological_process | 3839 Western blot assay | fission_yeast_phenotype | 4215 Inferred from Direct Assay | cellular_component | 5436 Inferred from high throughput direct assay | cellular_component | 6848 experimental evidence | PSI-MOD | 8141 mass spectrometry evidence | gene_ex | 13682 experimental evidence | gene_ex | 20120 cell growth assay evidence | fission_yeast_phenotype | 32394 tryptic phosphopeptide mapping assay evidence used in automatic assertion | PSI-MOD | 34008 Microscopy | fission_yeast_phenotype | 37314 (127 rows) annotation counts by evidence code and cv type, sorted by cv evidence code: ev_code | cv_name | count ----------------------------------------------------------------------------------+--------------------------+------- Chromatin immunoprecipitation experiment | fission_yeast_phenotype | 1868 Chromatography evidence | fission_yeast_phenotype | 69 Co-immunoprecipitation experiment | fission_yeast_phenotype | 953 Electrophoretic mobility shift assay data | fission_yeast_phenotype | 173 Enzyme assay data | fission_yeast_phenotype | 1864 Epitope-tagged protein immunolocalization experiment data | fission_yeast_phenotype | 45 Flow cytometry data | fission_yeast_phenotype | 2160 Immunolocalization experiment data | fission_yeast_phenotype | 23 Inferred by Curator | biological_process | 1121 Inferred by Curator | cellular_component | 521 Inferred by Curator | molecular_function | 132 Inferred from Biological aspect of Ancestor | biological_process | 1490 Inferred from Biological aspect of Ancestor | cellular_component | 1009 Inferred from Biological aspect of Ancestor | molecular_function | 912 Inferred from Direct Assay | PSI-MOD | 3085 Inferred from Direct Assay | biological_process | 721 Inferred from Direct Assay | cellular_component | 5436 Inferred from Direct Assay | misc | 1 Inferred from Direct Assay | molecular_function | 1954 Inferred from Direct Assay | sequence | 2 Inferred from Direct Assay | subunit_composition | 4 Inferred from Electronic Annotation | biological_process | 467 Inferred from Electronic Annotation | cellular_component | 880 Inferred from Electronic Annotation | molecular_function | 1894 Inferred from Experiment | biological_process | 328 Inferred from Experiment | cellular_component | 268 Inferred from Experiment | molecular_function | 544 Inferred from Expression Pattern | biological_process | 18 Inferred from Genetic Interaction | biological_process | 611 Inferred from Genetic Interaction | cellular_component | 46 Inferred from Genetic Interaction | molecular_function | 131 Inferred from Key Residues | molecular_function | 1 Inferred from Mutant Phenotype | PSI-MOD | 1 Inferred from Mutant Phenotype | biological_process | 3839 Inferred from Mutant Phenotype | cellular_component | 55 Inferred from Mutant Phenotype | misc | 4 Inferred from Mutant Phenotype | molecular_function | 834 Inferred from Mutant Phenotype | sequence | 8 Inferred from Physical Interaction | biological_process | 108 Inferred from Physical Interaction | cellular_component | 274 Inferred from Physical Interaction | misc | 2 Inferred from Physical Interaction | molecular_function | 2568 Inferred from Sequence Model | PSI-MOD | 2 Inferred from Sequence Model | biological_process | 171 Inferred from Sequence Model | cellular_component | 95 Inferred from Sequence Model | molecular_function | 1174 Inferred from Sequence Orthology | biological_process | 2040 Inferred from Sequence Orthology | cellular_component | 1497 Inferred from Sequence Orthology | molecular_function | 1335 Inferred from Sequence or Structural Similarity | PSI-MOD | 101 Inferred from Sequence or Structural Similarity | PomBase family or domain | 5 Inferred from Sequence or Structural Similarity | biological_process | 551 Inferred from Sequence or Structural Similarity | cellular_component | 397 Inferred from Sequence or Structural Similarity | genome_org | 13 Inferred from Sequence or Structural Similarity | m_f_g | 42 Inferred from Sequence or Structural Similarity | misc | 1 Inferred from Sequence or Structural Similarity | molecular_function | 466 Inferred from Sequence or Structural Similarity | sequence | 355 Inferred from Sequence or Structural Similarity | subunit_composition | 1 Inferred from Sequence or Structural Similarity | warning | 101 Inferred from high throughput direct assay | biological_process | 17 Inferred from high throughput direct assay | cellular_component | 6848 Inferred from high throughput direct assay | molecular_function | 17 Inferred from high throughput mutant phenotype | molecular_function | 1535 Microscopy | PomGeneExProt | 5 Microscopy | fission_yeast_phenotype | 37314 Non-traceable Author Statement | biological_process | 351 Non-traceable Author Statement | cellular_component | 171 Non-traceable Author Statement | complementation | 1 Non-traceable Author Statement | molecular_function | 136 Northern assay evidence | PomGeneExRNA | 106 Northern assay evidence | fission_yeast_phenotype | 118 Other | fission_yeast_phenotype | 1860 Other direct assay | fission_yeast_phenotype | 9 Particle size and count assay | fission_yeast_phenotype | 33 Plasmid maintenance assay evidence | fission_yeast_phenotype | 81 RNA protection assay evidence | PomGeneExRNA | 58 RNA-sequencing evidence | PomGeneExRNA | 3819 Substance quantification | fission_yeast_phenotype | 1 Substance quantification evidence | fission_yeast_phenotype | 1124 Traceable Author Statement | PSI-MOD | 1 Traceable Author Statement | PomBase family or domain | 5 Traceable Author Statement | biological_process | 139 Traceable Author Statement | cellular_component | 99 Traceable Author Statement | molecular_function | 136 Traceable Author Statement | sequence | 2 Western blot assay | fission_yeast_phenotype | 4215 Western blot evidence | PomGeneExProt | 59 cell growth assay evidence | fission_yeast_phenotype | 32394 competitive growth assay evidence | fission_yeast_phenotype | 1428 experimental evidence | PSI-MOD | 8141 experimental evidence | PomGeneExProt | 1 experimental evidence | PomGeneExRNA | 198 experimental evidence | gene_ex | 20120 experimental phenotypic evidence | fission_yeast_phenotype | 493 expression microarray evidence | PomGeneExRNA | 3359 fusion protein localization evidence | PomGeneExProt | 11 gel electrophoresis evidence | fission_yeast_phenotype | 2448 high throughput nucleotide sequencing assay evidence | fission_yeast_phenotype | 206 immunofluorescence evidence | PomGeneExProt | 6 in situ hybridization assay evidence | gene_ex | 14 in situ hybridization evidence used in manual assertion | PomGeneExRNA | 3 mass spectrometry evidence | PSI-MOD | 3202 mass spectrometry evidence | PomGeneExProt | 614 mass spectrometry evidence | gene_ex | 13682 microscopy evidence used in manual assertion | fission_yeast_phenotype | 659 northern assay evidence used in manual assertion | PomGeneExProt | 6 northern assay evidence used in manual assertion | PomGeneExRNA | 830 protein expression level evidence based on western blot used in manual assertion | gene_ex | 2 quantitative PCR | PomGeneExProt | 3 quantitative PCR | PomGeneExRNA | 109 quantitative PCR | fission_yeast_phenotype | 778 quantitative polymerase chain reaction evidence used in manual assertion | PomGeneExRNA | 8 reporter gene assay evidence | PomGeneExProt | 134 reporter gene assay evidence | PomGeneExRNA | 12 reporter gene assay evidence | fission_yeast_phenotype | 2772 reverse transcription polymerase chain reaction transcription evidence | PomGeneExRNA | 60 ribosome profiling evidence | PomGeneExRD | 734 sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | PomGeneExProt | 2 sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | fission_yeast_phenotype | 22 transcript expression level evidence | PomGeneExRNA | 16 transcript expression level evidence | fission_yeast_phenotype | 3777 tryptic phosphopeptide mapping assay evidence used in automatic assertion | PSI-MOD | 34008 tryptic phosphopeptide mapping assay evidence used in automatic assertion | fission_yeast_phenotype | 149 western blot evidence used in manual assertion | PomGeneExProt | 442 western blot evidence used in manual assertion | PomGeneExRNA | 13 western blot evidence used in manual assertion | fission_yeast_phenotype | 147 (127 rows) total: count -------- 336907 (1 row) counts of annotation from Canto, by type: count | cv_name -------+------------------------------------ 3 | PomGeneExRNA 1290 | PSI-MOD 2630 | molecular_function 3058 | cellular_component 3648 | biological_process 32832 | PomBase annotation extension terms 37217 | fission_yeast_phenotype (7 rows) total ------- 80678 (1 row)