counts of all annotation by type: count | cv_name -------+-------------------------------------- 6 | external_link 22 | ex_tools 27 | cat_act 28 | pathway 90 | m_f_g 190 | subunit_composition 244 | genome_org 421 | misc 452 | complementation 734 | PomGeneExRD 832 | EC numbers 958 | sequence 969 | name_description 1289 | PomGeneExProt 1810 | warning 1870 | PomBase family or domain 4048 | kegg_pombe_pathway 4574 | mondo 5148 | PomBase gene characterisation status 8609 | PomGeneExRNA 11935 | biological_process 13758 | molecular_function 17594 | cellular_component 25173 | species_dist 33818 | gene_ex 48606 | PSI-MOD 61398 | PomBase gene products 98954 | fission_yeast_phenotype (28 rows) annotation counts by evidence code and cv type, sorted by cv name: ev_code | cv_name | count ----------------------------------------------------------------------------------+--------------------------+------- Inferred from Direct Assay | PSI-MOD | 3091 Inferred from Mutant Phenotype | PSI-MOD | 1 Inferred from Sequence Model | PSI-MOD | 2 Inferred from Sequence or Structural Similarity | PSI-MOD | 101 Traceable Author Statement | PSI-MOD | 1 experimental evidence | PSI-MOD | 8141 mass spectrometry evidence | PSI-MOD | 3202 tryptic phosphopeptide mapping assay evidence used in automatic assertion | PSI-MOD | 34008 Inferred from Sequence or Structural Similarity | PomBase family or domain | 5 Traceable Author Statement | PomBase family or domain | 5 Microscopy | PomGeneExProt | 5 Western blot evidence | PomGeneExProt | 59 experimental evidence | PomGeneExProt | 1 fusion protein localization evidence | PomGeneExProt | 11 immunofluorescence evidence | PomGeneExProt | 6 mass spectrometry evidence | PomGeneExProt | 614 northern assay evidence used in manual assertion | PomGeneExProt | 6 quantitative PCR | PomGeneExProt | 3 reporter gene assay evidence | PomGeneExProt | 134 sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | PomGeneExProt | 2 western blot evidence used in manual assertion | PomGeneExProt | 442 ribosome profiling evidence | PomGeneExRD | 734 Northern assay evidence | PomGeneExRNA | 107 RNA protection assay evidence | PomGeneExRNA | 58 RNA-sequencing evidence | PomGeneExRNA | 3819 experimental evidence | PomGeneExRNA | 198 expression microarray evidence | PomGeneExRNA | 3359 in situ hybridization evidence used in manual assertion | PomGeneExRNA | 3 northern assay evidence used in manual assertion | PomGeneExRNA | 830 quantitative PCR | PomGeneExRNA | 109 quantitative polymerase chain reaction evidence used in manual assertion | PomGeneExRNA | 8 reporter gene assay evidence | PomGeneExRNA | 12 reverse transcription polymerase chain reaction transcription evidence | PomGeneExRNA | 60 transcript expression level evidence | PomGeneExRNA | 16 western blot evidence used in manual assertion | PomGeneExRNA | 13 Inferred by Curator | biological_process | 1119 Inferred from Biological aspect of Ancestor | biological_process | 1469 Inferred from Direct Assay | biological_process | 715 Inferred from Electronic Annotation | biological_process | 469 Inferred from Experiment | biological_process | 328 Inferred from Expression Pattern | biological_process | 18 Inferred from Genetic Interaction | biological_process | 610 Inferred from Mutant Phenotype | biological_process | 3827 Inferred from Physical Interaction | biological_process | 106 Inferred from Sequence Model | biological_process | 172 Inferred from Sequence Orthology | biological_process | 2038 Inferred from Sequence or Structural Similarity | biological_process | 550 Inferred from high throughput direct assay | biological_process | 17 Non-traceable Author Statement | biological_process | 357 Traceable Author Statement | biological_process | 140 Inferred by Curator | cellular_component | 521 Inferred from Biological aspect of Ancestor | cellular_component | 998 Inferred from Direct Assay | cellular_component | 5435 Inferred from Electronic Annotation | cellular_component | 878 Inferred from Experiment | cellular_component | 269 Inferred from Genetic Interaction | cellular_component | 46 Inferred from Mutant Phenotype | cellular_component | 55 Inferred from Physical Interaction | cellular_component | 280 Inferred from Sequence Model | cellular_component | 97 Inferred from Sequence Orthology | cellular_component | 1497 Inferred from Sequence or Structural Similarity | cellular_component | 396 Inferred from high throughput direct assay | cellular_component | 6847 Non-traceable Author Statement | cellular_component | 176 Traceable Author Statement | cellular_component | 99 Non-traceable Author Statement | complementation | 1 Chromatin immunoprecipitation experiment | fission_yeast_phenotype | 1877 Chromatography evidence | fission_yeast_phenotype | 69 Co-immunoprecipitation experiment | fission_yeast_phenotype | 957 Electrophoretic mobility shift assay data | fission_yeast_phenotype | 173 Enzyme assay data | fission_yeast_phenotype | 1864 Epitope-tagged protein immunolocalization experiment data | fission_yeast_phenotype | 45 Flow cytometry data | fission_yeast_phenotype | 2160 Immunolocalization experiment data | fission_yeast_phenotype | 23 Microscopy | fission_yeast_phenotype | 37317 Northern assay evidence | fission_yeast_phenotype | 118 Other | fission_yeast_phenotype | 1910 Other direct assay | fission_yeast_phenotype | 9 Particle size and count assay | fission_yeast_phenotype | 33 Plasmid maintenance assay evidence | fission_yeast_phenotype | 81 Substance quantification evidence | fission_yeast_phenotype | 1126 Western blot assay | fission_yeast_phenotype | 4221 cell growth assay evidence | fission_yeast_phenotype | 34025 competitive growth assay evidence | fission_yeast_phenotype | 1428 experimental phenotypic evidence | fission_yeast_phenotype | 493 gel electrophoresis evidence | fission_yeast_phenotype | 2461 high throughput nucleotide sequencing assay evidence | fission_yeast_phenotype | 206 microscopy evidence used in manual assertion | fission_yeast_phenotype | 659 quantitative PCR | fission_yeast_phenotype | 792 reporter gene assay evidence | fission_yeast_phenotype | 2811 sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | fission_yeast_phenotype | 22 transcript expression level evidence | fission_yeast_phenotype | 3778 tryptic phosphopeptide mapping assay evidence used in automatic assertion | fission_yeast_phenotype | 149 western blot evidence used in manual assertion | fission_yeast_phenotype | 147 experimental evidence | gene_ex | 20120 in situ hybridization assay evidence | gene_ex | 14 mass spectrometry evidence | gene_ex | 13682 protein expression level evidence based on western blot used in manual assertion | gene_ex | 2 Inferred from Sequence or Structural Similarity | genome_org | 13 Inferred from Sequence or Structural Similarity | m_f_g | 42 Inferred from Direct Assay | misc | 1 Inferred from Mutant Phenotype | misc | 4 Inferred from Physical Interaction | misc | 2 Inferred from Sequence or Structural Similarity | misc | 1 Inferred by Curator | molecular_function | 132 Inferred from Biological aspect of Ancestor | molecular_function | 908 Inferred from Direct Assay | molecular_function | 1952 Inferred from Electronic Annotation | molecular_function | 1889 Inferred from Experiment | molecular_function | 544 Inferred from Genetic Interaction | molecular_function | 131 Inferred from Key Residues | molecular_function | 1 Inferred from Mutant Phenotype | molecular_function | 833 Inferred from Physical Interaction | molecular_function | 2565 Inferred from Sequence Model | molecular_function | 1176 Inferred from Sequence Orthology | molecular_function | 1336 Inferred from Sequence or Structural Similarity | molecular_function | 465 Inferred from high throughput direct assay | molecular_function | 17 Inferred from high throughput mutant phenotype | molecular_function | 1535 Non-traceable Author Statement | molecular_function | 136 Traceable Author Statement | molecular_function | 138 Inferred from Direct Assay | sequence | 2 Inferred from Mutant Phenotype | sequence | 8 Inferred from Sequence or Structural Similarity | sequence | 355 Traceable Author Statement | sequence | 2 Inferred from Direct Assay | subunit_composition | 4 Inferred from Sequence or Structural Similarity | subunit_composition | 1 Inferred from Sequence or Structural Similarity | warning | 101 (126 rows) annotation counts by evidence code and cv type, sorted by count: ev_code | cv_name | count ----------------------------------------------------------------------------------+--------------------------+------- Traceable Author Statement | PSI-MOD | 1 Inferred from Mutant Phenotype | PSI-MOD | 1 Inferred from Sequence or Structural Similarity | subunit_composition | 1 Inferred from Key Residues | molecular_function | 1 Inferred from Direct Assay | misc | 1 Non-traceable Author Statement | complementation | 1 Inferred from Sequence or Structural Similarity | misc | 1 experimental evidence | PomGeneExProt | 1 Inferred from Sequence Model | PSI-MOD | 2 Inferred from Direct Assay | sequence | 2 sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | PomGeneExProt | 2 Traceable Author Statement | sequence | 2 protein expression level evidence based on western blot used in manual assertion | gene_ex | 2 Inferred from Physical Interaction | misc | 2 quantitative PCR | PomGeneExProt | 3 in situ hybridization evidence used in manual assertion | PomGeneExRNA | 3 Inferred from Mutant Phenotype | misc | 4 Inferred from Direct Assay | subunit_composition | 4 Inferred from Sequence or Structural Similarity | PomBase family or domain | 5 Traceable Author Statement | PomBase family or domain | 5 Microscopy | PomGeneExProt | 5 northern assay evidence used in manual assertion | PomGeneExProt | 6 immunofluorescence evidence | PomGeneExProt | 6 Inferred from Mutant Phenotype | sequence | 8 quantitative polymerase chain reaction evidence used in manual assertion | PomGeneExRNA | 8 Other direct assay | fission_yeast_phenotype | 9 fusion protein localization evidence | PomGeneExProt | 11 reporter gene assay evidence | PomGeneExRNA | 12 western blot evidence used in manual assertion | PomGeneExRNA | 13 Inferred from Sequence or Structural Similarity | genome_org | 13 in situ hybridization assay evidence | gene_ex | 14 transcript expression level evidence | PomGeneExRNA | 16 Inferred from high throughput direct assay | biological_process | 17 Inferred from high throughput direct assay | molecular_function | 17 Inferred from Expression Pattern | biological_process | 18 sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | fission_yeast_phenotype | 22 Immunolocalization experiment data | fission_yeast_phenotype | 23 Particle size and count assay | fission_yeast_phenotype | 33 Inferred from Sequence or Structural Similarity | m_f_g | 42 Epitope-tagged protein immunolocalization experiment data | fission_yeast_phenotype | 45 Inferred from Genetic Interaction | cellular_component | 46 Inferred from Mutant Phenotype | cellular_component | 55 RNA protection assay evidence | PomGeneExRNA | 58 Western blot evidence | PomGeneExProt | 59 reverse transcription polymerase chain reaction transcription evidence | PomGeneExRNA | 60 Chromatography evidence | fission_yeast_phenotype | 69 Plasmid maintenance assay evidence | fission_yeast_phenotype | 81 Inferred from Sequence Model | cellular_component | 97 Traceable Author Statement | cellular_component | 99 Inferred from Sequence or Structural Similarity | PSI-MOD | 101 Inferred from Sequence or Structural Similarity | warning | 101 Inferred from Physical Interaction | biological_process | 106 Northern assay evidence | PomGeneExRNA | 107 quantitative PCR | PomGeneExRNA | 109 Northern assay evidence | fission_yeast_phenotype | 118 Inferred from Genetic Interaction | molecular_function | 131 Inferred by Curator | molecular_function | 132 reporter gene assay evidence | PomGeneExProt | 134 Non-traceable Author Statement | molecular_function | 136 Traceable Author Statement | molecular_function | 138 Traceable Author Statement | biological_process | 140 western blot evidence used in manual assertion | fission_yeast_phenotype | 147 tryptic phosphopeptide mapping assay evidence used in automatic assertion | fission_yeast_phenotype | 149 Inferred from Sequence Model | biological_process | 172 Electrophoretic mobility shift assay data | fission_yeast_phenotype | 173 Non-traceable Author Statement | cellular_component | 176 experimental evidence | PomGeneExRNA | 198 high throughput nucleotide sequencing assay evidence | fission_yeast_phenotype | 206 Inferred from Experiment | cellular_component | 269 Inferred from Physical Interaction | cellular_component | 280 Inferred from Experiment | biological_process | 328 Inferred from Sequence or Structural Similarity | sequence | 355 Non-traceable Author Statement | biological_process | 357 Inferred from Sequence or Structural Similarity | cellular_component | 396 western blot evidence used in manual assertion | PomGeneExProt | 442 Inferred from Sequence or Structural Similarity | molecular_function | 465 Inferred from Electronic Annotation | biological_process | 469 experimental phenotypic evidence | fission_yeast_phenotype | 493 Inferred by Curator | cellular_component | 521 Inferred from Experiment | molecular_function | 544 Inferred from Sequence or Structural Similarity | biological_process | 550 Inferred from Genetic Interaction | biological_process | 610 mass spectrometry evidence | PomGeneExProt | 614 microscopy evidence used in manual assertion | fission_yeast_phenotype | 659 Inferred from Direct Assay | biological_process | 715 ribosome profiling evidence | PomGeneExRD | 734 quantitative PCR | fission_yeast_phenotype | 792 northern assay evidence used in manual assertion | PomGeneExRNA | 830 Inferred from Mutant Phenotype | molecular_function | 833 Inferred from Electronic Annotation | cellular_component | 878 Inferred from Biological aspect of Ancestor | molecular_function | 908 Co-immunoprecipitation experiment | fission_yeast_phenotype | 957 Inferred from Biological aspect of Ancestor | cellular_component | 998 Inferred by Curator | biological_process | 1119 Substance quantification evidence | fission_yeast_phenotype | 1126 Inferred from Sequence Model | molecular_function | 1176 Inferred from Sequence Orthology | molecular_function | 1336 competitive growth assay evidence | fission_yeast_phenotype | 1428 Inferred from Biological aspect of Ancestor | biological_process | 1469 Inferred from Sequence Orthology | cellular_component | 1497 Inferred from high throughput mutant phenotype | molecular_function | 1535 Enzyme assay data | fission_yeast_phenotype | 1864 Chromatin immunoprecipitation experiment | fission_yeast_phenotype | 1877 Inferred from Electronic Annotation | molecular_function | 1889 Other | fission_yeast_phenotype | 1910 Inferred from Direct Assay | molecular_function | 1952 Inferred from Sequence Orthology | biological_process | 2038 Flow cytometry data | fission_yeast_phenotype | 2160 gel electrophoresis evidence | fission_yeast_phenotype | 2461 Inferred from Physical Interaction | molecular_function | 2565 reporter gene assay evidence | fission_yeast_phenotype | 2811 Inferred from Direct Assay | PSI-MOD | 3091 mass spectrometry evidence | PSI-MOD | 3202 expression microarray evidence | PomGeneExRNA | 3359 transcript expression level evidence | fission_yeast_phenotype | 3778 RNA-sequencing evidence | PomGeneExRNA | 3819 Inferred from Mutant Phenotype | biological_process | 3827 Western blot assay | fission_yeast_phenotype | 4221 Inferred from Direct Assay | cellular_component | 5435 Inferred from high throughput direct assay | cellular_component | 6847 experimental evidence | PSI-MOD | 8141 mass spectrometry evidence | gene_ex | 13682 experimental evidence | gene_ex | 20120 tryptic phosphopeptide mapping assay evidence used in automatic assertion | PSI-MOD | 34008 cell growth assay evidence | fission_yeast_phenotype | 34025 Microscopy | fission_yeast_phenotype | 37317 (126 rows) annotation counts by evidence code and cv type, sorted by cv evidence code: ev_code | cv_name | count ----------------------------------------------------------------------------------+--------------------------+------- Chromatin immunoprecipitation experiment | fission_yeast_phenotype | 1877 Chromatography evidence | fission_yeast_phenotype | 69 Co-immunoprecipitation experiment | fission_yeast_phenotype | 957 Electrophoretic mobility shift assay data | fission_yeast_phenotype | 173 Enzyme assay data | fission_yeast_phenotype | 1864 Epitope-tagged protein immunolocalization experiment data | fission_yeast_phenotype | 45 Flow cytometry data | fission_yeast_phenotype | 2160 Immunolocalization experiment data | fission_yeast_phenotype | 23 Inferred by Curator | biological_process | 1119 Inferred by Curator | cellular_component | 521 Inferred by Curator | molecular_function | 132 Inferred from Biological aspect of Ancestor | biological_process | 1469 Inferred from Biological aspect of Ancestor | cellular_component | 998 Inferred from Biological aspect of Ancestor | molecular_function | 908 Inferred from Direct Assay | PSI-MOD | 3091 Inferred from Direct Assay | biological_process | 715 Inferred from Direct Assay | cellular_component | 5435 Inferred from Direct Assay | misc | 1 Inferred from Direct Assay | molecular_function | 1952 Inferred from Direct Assay | sequence | 2 Inferred from Direct Assay | subunit_composition | 4 Inferred from Electronic Annotation | biological_process | 469 Inferred from Electronic Annotation | cellular_component | 878 Inferred from Electronic Annotation | molecular_function | 1889 Inferred from Experiment | biological_process | 328 Inferred from Experiment | cellular_component | 269 Inferred from Experiment | molecular_function | 544 Inferred from Expression Pattern | biological_process | 18 Inferred from Genetic Interaction | biological_process | 610 Inferred from Genetic Interaction | cellular_component | 46 Inferred from Genetic Interaction | molecular_function | 131 Inferred from Key Residues | molecular_function | 1 Inferred from Mutant Phenotype | PSI-MOD | 1 Inferred from Mutant Phenotype | biological_process | 3827 Inferred from Mutant Phenotype | cellular_component | 55 Inferred from Mutant Phenotype | misc | 4 Inferred from Mutant Phenotype | molecular_function | 833 Inferred from Mutant Phenotype | sequence | 8 Inferred from Physical Interaction | biological_process | 106 Inferred from Physical Interaction | cellular_component | 280 Inferred from Physical Interaction | misc | 2 Inferred from Physical Interaction | molecular_function | 2565 Inferred from Sequence Model | PSI-MOD | 2 Inferred from Sequence Model | biological_process | 172 Inferred from Sequence Model | cellular_component | 97 Inferred from Sequence Model | molecular_function | 1176 Inferred from Sequence Orthology | biological_process | 2038 Inferred from Sequence Orthology | cellular_component | 1497 Inferred from Sequence Orthology | molecular_function | 1336 Inferred from Sequence or Structural Similarity | PSI-MOD | 101 Inferred from Sequence or Structural Similarity | PomBase family or domain | 5 Inferred from Sequence or Structural Similarity | biological_process | 550 Inferred from Sequence or Structural Similarity | cellular_component | 396 Inferred from Sequence or Structural Similarity | genome_org | 13 Inferred from Sequence or Structural Similarity | m_f_g | 42 Inferred from Sequence or Structural Similarity | misc | 1 Inferred from Sequence or Structural Similarity | molecular_function | 465 Inferred from Sequence or Structural Similarity | sequence | 355 Inferred from Sequence or Structural Similarity | subunit_composition | 1 Inferred from Sequence or Structural Similarity | warning | 101 Inferred from high throughput direct assay | biological_process | 17 Inferred from high throughput direct assay | cellular_component | 6847 Inferred from high throughput direct assay | molecular_function | 17 Inferred from high throughput mutant phenotype | molecular_function | 1535 Microscopy | PomGeneExProt | 5 Microscopy | fission_yeast_phenotype | 37317 Non-traceable Author Statement | biological_process | 357 Non-traceable Author Statement | cellular_component | 176 Non-traceable Author Statement | complementation | 1 Non-traceable Author Statement | molecular_function | 136 Northern assay evidence | PomGeneExRNA | 107 Northern assay evidence | fission_yeast_phenotype | 118 Other | fission_yeast_phenotype | 1910 Other direct assay | fission_yeast_phenotype | 9 Particle size and count assay | fission_yeast_phenotype | 33 Plasmid maintenance assay evidence | fission_yeast_phenotype | 81 RNA protection assay evidence | PomGeneExRNA | 58 RNA-sequencing evidence | PomGeneExRNA | 3819 Substance quantification evidence | fission_yeast_phenotype | 1126 Traceable Author Statement | PSI-MOD | 1 Traceable Author Statement | PomBase family or domain | 5 Traceable Author Statement | biological_process | 140 Traceable Author Statement | cellular_component | 99 Traceable Author Statement | molecular_function | 138 Traceable Author Statement | sequence | 2 Western blot assay | fission_yeast_phenotype | 4221 Western blot evidence | PomGeneExProt | 59 cell growth assay evidence | fission_yeast_phenotype | 34025 competitive growth assay evidence | fission_yeast_phenotype | 1428 experimental evidence | PSI-MOD | 8141 experimental evidence | PomGeneExProt | 1 experimental evidence | PomGeneExRNA | 198 experimental evidence | gene_ex | 20120 experimental phenotypic evidence | fission_yeast_phenotype | 493 expression microarray evidence | PomGeneExRNA | 3359 fusion protein localization evidence | PomGeneExProt | 11 gel electrophoresis evidence | fission_yeast_phenotype | 2461 high throughput nucleotide sequencing assay evidence | fission_yeast_phenotype | 206 immunofluorescence evidence | PomGeneExProt | 6 in situ hybridization assay evidence | gene_ex | 14 in situ hybridization evidence used in manual assertion | PomGeneExRNA | 3 mass spectrometry evidence | PSI-MOD | 3202 mass spectrometry evidence | PomGeneExProt | 614 mass spectrometry evidence | gene_ex | 13682 microscopy evidence used in manual assertion | fission_yeast_phenotype | 659 northern assay evidence used in manual assertion | PomGeneExProt | 6 northern assay evidence used in manual assertion | PomGeneExRNA | 830 protein expression level evidence based on western blot used in manual assertion | gene_ex | 2 quantitative PCR | PomGeneExProt | 3 quantitative PCR | PomGeneExRNA | 109 quantitative PCR | fission_yeast_phenotype | 792 quantitative polymerase chain reaction evidence used in manual assertion | PomGeneExRNA | 8 reporter gene assay evidence | PomGeneExProt | 134 reporter gene assay evidence | PomGeneExRNA | 12 reporter gene assay evidence | fission_yeast_phenotype | 2811 reverse transcription polymerase chain reaction transcription evidence | PomGeneExRNA | 60 ribosome profiling evidence | PomGeneExRD | 734 sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | PomGeneExProt | 2 sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | fission_yeast_phenotype | 22 transcript expression level evidence | PomGeneExRNA | 16 transcript expression level evidence | fission_yeast_phenotype | 3778 tryptic phosphopeptide mapping assay evidence used in automatic assertion | PSI-MOD | 34008 tryptic phosphopeptide mapping assay evidence used in automatic assertion | fission_yeast_phenotype | 149 western blot evidence used in manual assertion | PomGeneExProt | 442 western blot evidence used in manual assertion | PomGeneExRNA | 13 western blot evidence used in manual assertion | fission_yeast_phenotype | 147 (126 rows) total: count -------- 343557 (1 row) counts of annotation from Canto, by type: count | cv_name -------+------------------------------------ 41 | PomGeneExProt 88 | PomGeneExRNA 2160 | PSI-MOD 4304 | molecular_function 4371 | biological_process 5002 | cellular_component 32924 | PomBase annotation extension terms 64900 | fission_yeast_phenotype (8 rows) total ------- 80866 (1 row)