counts of all annotation by type:
count | cv_name
-------+--------------------------------------
6 | external_link
22 | ex_tools
27 | cat_act
28 | pathway
90 | m_f_g
191 | subunit_composition
244 | genome_org
421 | misc
452 | complementation
734 | PomGeneExRD
832 | EC numbers
958 | sequence
969 | name_description
1289 | PomGeneExProt
1806 | warning
1868 | PomBase family or domain
4046 | kegg_pombe_pathway
4585 | mondo
5147 | PomBase gene characterisation status
8668 | PomGeneExRNA
11947 | biological_process
13850 | molecular_function
17614 | cellular_component
25162 | species_dist
33818 | gene_ex
48614 | PSI-MOD
61450 | PomBase gene products
98959 | fission_yeast_phenotype
(28 rows)
annotation counts by evidence code and cv type, sorted by cv name:
ev_code | cv_name | count
----------------------------------------------------------------------------------+--------------------------+-------
Inferred from Direct Assay | PSI-MOD | 3099
Inferred from Mutant Phenotype | PSI-MOD | 1
Inferred from Sequence Model | PSI-MOD | 2
Inferred from Sequence or Structural Similarity | PSI-MOD | 101
Traceable Author Statement | PSI-MOD | 1
experimental evidence | PSI-MOD | 8141
mass spectrometry evidence | PSI-MOD | 3202
tryptic phosphopeptide mapping assay evidence used in automatic assertion | PSI-MOD | 34008
Inferred from Sequence or Structural Similarity | PomBase family or domain | 5
Traceable Author Statement | PomBase family or domain | 5
Microscopy | PomGeneExProt | 5
Western blot evidence | PomGeneExProt | 59
experimental evidence | PomGeneExProt | 1
fusion protein localization evidence | PomGeneExProt | 11
immunofluorescence evidence | PomGeneExProt | 6
mass spectrometry evidence | PomGeneExProt | 614
northern assay evidence used in manual assertion | PomGeneExProt | 6
quantitative PCR | PomGeneExProt | 3
reporter gene assay evidence | PomGeneExProt | 134
sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | PomGeneExProt | 2
western blot evidence used in manual assertion | PomGeneExProt | 442
ribosome profiling evidence | PomGeneExRD | 734
Northern assay evidence | PomGeneExRNA | 109
RNA protection assay evidence | PomGeneExRNA | 58
RNA-sequencing evidence | PomGeneExRNA | 3819
experimental evidence | PomGeneExRNA | 198
expression microarray evidence | PomGeneExRNA | 3416
in situ hybridization evidence used in manual assertion | PomGeneExRNA | 3
northern assay evidence used in manual assertion | PomGeneExRNA | 830
quantitative PCR | PomGeneExRNA | 109
quantitative polymerase chain reaction evidence used in manual assertion | PomGeneExRNA | 8
reporter gene assay evidence | PomGeneExRNA | 12
reverse transcription polymerase chain reaction transcription evidence | PomGeneExRNA | 60
transcript expression level evidence | PomGeneExRNA | 16
western blot evidence used in manual assertion | PomGeneExRNA | 13
Inferred by Curator | biological_process | 1128
Inferred from Biological aspect of Ancestor | biological_process | 1456
Inferred from Direct Assay | biological_process | 719
Inferred from Electronic Annotation | biological_process | 521
Inferred from Experiment | biological_process | 336
Inferred from Expression Pattern | biological_process | 18
Inferred from Genetic Interaction | biological_process | 603
Inferred from Mutant Phenotype | biological_process | 3816
Inferred from Physical Interaction | biological_process | 86
Inferred from Sequence Model | biological_process | 169
Inferred from Sequence Orthology | biological_process | 2034
Inferred from Sequence or Structural Similarity | biological_process | 551
Inferred from high throughput direct assay | biological_process | 17
Non-traceable Author Statement | biological_process | 351
Traceable Author Statement | biological_process | 142
Inferred by Curator | cellular_component | 535
Inferred from Biological aspect of Ancestor | cellular_component | 980
Inferred from Direct Assay | cellular_component | 5444
Inferred from Electronic Annotation | cellular_component | 892
Inferred from Experiment | cellular_component | 275
Inferred from Genetic Interaction | cellular_component | 46
Inferred from Mutant Phenotype | cellular_component | 56
Inferred from Physical Interaction | cellular_component | 280
Inferred from Sequence Model | cellular_component | 95
Inferred from Sequence Orthology | cellular_component | 1496
Inferred from Sequence or Structural Similarity | cellular_component | 395
Inferred from high throughput direct assay | cellular_component | 6843
Non-traceable Author Statement | cellular_component | 176
Traceable Author Statement | cellular_component | 101
Non-traceable Author Statement | complementation | 1
Chromatin immunoprecipitation experiment | fission_yeast_phenotype | 1877
Chromatography evidence | fission_yeast_phenotype | 69
Co-immunoprecipitation experiment | fission_yeast_phenotype | 959
Electrophoretic mobility shift assay data | fission_yeast_phenotype | 173
Enzyme assay data | fission_yeast_phenotype | 1877
Epitope-tagged protein immunolocalization experiment data | fission_yeast_phenotype | 47
Flow cytometry data | fission_yeast_phenotype | 2167
Immunolocalization experiment data | fission_yeast_phenotype | 23
Microscopy | fission_yeast_phenotype | 37251
Northern assay evidence | fission_yeast_phenotype | 118
Other | fission_yeast_phenotype | 1927
Other direct assay | fission_yeast_phenotype | 9
Particle size and count assay | fission_yeast_phenotype | 30
Plasmid maintenance assay evidence | fission_yeast_phenotype | 81
Substance quantification evidence | fission_yeast_phenotype | 1136
Western blot assay | fission_yeast_phenotype | 4270
cell growth assay evidence | fission_yeast_phenotype | 34214
competitive growth assay evidence | fission_yeast_phenotype | 1194
experimental phenotypic evidence | fission_yeast_phenotype | 493
gel electrophoresis evidence | fission_yeast_phenotype | 2462
high throughput nucleotide sequencing assay evidence | fission_yeast_phenotype | 206
microscopy evidence used in manual assertion | fission_yeast_phenotype | 659
quantitative PCR | fission_yeast_phenotype | 792
reporter gene assay evidence | fission_yeast_phenotype | 2827
sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | fission_yeast_phenotype | 22
transcript expression level evidence | fission_yeast_phenotype | 3780
tryptic phosphopeptide mapping assay evidence used in automatic assertion | fission_yeast_phenotype | 149
western blot evidence used in manual assertion | fission_yeast_phenotype | 147
experimental evidence | gene_ex | 20120
in situ hybridization assay evidence | gene_ex | 14
mass spectrometry evidence | gene_ex | 13682
protein expression level evidence based on western blot used in manual assertion | gene_ex | 2
Inferred from Sequence or Structural Similarity | genome_org | 13
Inferred from Sequence or Structural Similarity | m_f_g | 42
Inferred from Direct Assay | misc | 1
Inferred from Mutant Phenotype | misc | 4
Inferred from Physical Interaction | misc | 2
Inferred from Sequence or Structural Similarity | misc | 1
Inferred by Curator | molecular_function | 137
Inferred from Biological aspect of Ancestor | molecular_function | 893
Inferred from Direct Assay | molecular_function | 1956
Inferred from Electronic Annotation | molecular_function | 1944
Inferred from Experiment | molecular_function | 557
Inferred from Genetic Interaction | molecular_function | 125
Inferred from Key Residues | molecular_function | 1
Inferred from Mutant Phenotype | molecular_function | 837
Inferred from Physical Interaction | molecular_function | 2578
Inferred from Sequence Model | molecular_function | 1175
Inferred from Sequence Orthology | molecular_function | 1335
Inferred from Sequence or Structural Similarity | molecular_function | 463
Inferred from high throughput direct assay | molecular_function | 17
Inferred from high throughput mutant phenotype | molecular_function | 1535
Non-traceable Author Statement | molecular_function | 159
Traceable Author Statement | molecular_function | 138
Inferred from Direct Assay | sequence | 2
Inferred from Mutant Phenotype | sequence | 8
Inferred from Sequence or Structural Similarity | sequence | 355
Traceable Author Statement | sequence | 2
Inferred from Direct Assay | subunit_composition | 4
Inferred from Sequence or Structural Similarity | subunit_composition | 1
Inferred from Sequence or Structural Similarity | warning | 101
(126 rows)
annotation counts by evidence code and cv type, sorted by count:
ev_code | cv_name | count
----------------------------------------------------------------------------------+--------------------------+-------
Traceable Author Statement | PSI-MOD | 1
Inferred from Mutant Phenotype | PSI-MOD | 1
Inferred from Sequence or Structural Similarity | subunit_composition | 1
Inferred from Key Residues | molecular_function | 1
Inferred from Direct Assay | misc | 1
Non-traceable Author Statement | complementation | 1
Inferred from Sequence or Structural Similarity | misc | 1
experimental evidence | PomGeneExProt | 1
Inferred from Sequence Model | PSI-MOD | 2
Inferred from Direct Assay | sequence | 2
sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | PomGeneExProt | 2
Traceable Author Statement | sequence | 2
protein expression level evidence based on western blot used in manual assertion | gene_ex | 2
Inferred from Physical Interaction | misc | 2
quantitative PCR | PomGeneExProt | 3
in situ hybridization evidence used in manual assertion | PomGeneExRNA | 3
Inferred from Mutant Phenotype | misc | 4
Inferred from Direct Assay | subunit_composition | 4
Inferred from Sequence or Structural Similarity | PomBase family or domain | 5
Traceable Author Statement | PomBase family or domain | 5
Microscopy | PomGeneExProt | 5
northern assay evidence used in manual assertion | PomGeneExProt | 6
immunofluorescence evidence | PomGeneExProt | 6
Inferred from Mutant Phenotype | sequence | 8
quantitative polymerase chain reaction evidence used in manual assertion | PomGeneExRNA | 8
Other direct assay | fission_yeast_phenotype | 9
fusion protein localization evidence | PomGeneExProt | 11
reporter gene assay evidence | PomGeneExRNA | 12
western blot evidence used in manual assertion | PomGeneExRNA | 13
Inferred from Sequence or Structural Similarity | genome_org | 13
in situ hybridization assay evidence | gene_ex | 14
transcript expression level evidence | PomGeneExRNA | 16
Inferred from high throughput direct assay | biological_process | 17
Inferred from high throughput direct assay | molecular_function | 17
Inferred from Expression Pattern | biological_process | 18
sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | fission_yeast_phenotype | 22
Immunolocalization experiment data | fission_yeast_phenotype | 23
Particle size and count assay | fission_yeast_phenotype | 30
Inferred from Sequence or Structural Similarity | m_f_g | 42
Inferred from Genetic Interaction | cellular_component | 46
Epitope-tagged protein immunolocalization experiment data | fission_yeast_phenotype | 47
Inferred from Mutant Phenotype | cellular_component | 56
RNA protection assay evidence | PomGeneExRNA | 58
Western blot evidence | PomGeneExProt | 59
reverse transcription polymerase chain reaction transcription evidence | PomGeneExRNA | 60
Chromatography evidence | fission_yeast_phenotype | 69
Plasmid maintenance assay evidence | fission_yeast_phenotype | 81
Inferred from Physical Interaction | biological_process | 86
Inferred from Sequence Model | cellular_component | 95
Inferred from Sequence or Structural Similarity | PSI-MOD | 101
Traceable Author Statement | cellular_component | 101
Inferred from Sequence or Structural Similarity | warning | 101
Northern assay evidence | PomGeneExRNA | 109
quantitative PCR | PomGeneExRNA | 109
Northern assay evidence | fission_yeast_phenotype | 118
Inferred from Genetic Interaction | molecular_function | 125
reporter gene assay evidence | PomGeneExProt | 134
Inferred by Curator | molecular_function | 137
Traceable Author Statement | molecular_function | 138
Traceable Author Statement | biological_process | 142
western blot evidence used in manual assertion | fission_yeast_phenotype | 147
tryptic phosphopeptide mapping assay evidence used in automatic assertion | fission_yeast_phenotype | 149
Non-traceable Author Statement | molecular_function | 159
Inferred from Sequence Model | biological_process | 169
Electrophoretic mobility shift assay data | fission_yeast_phenotype | 173
Non-traceable Author Statement | cellular_component | 176
experimental evidence | PomGeneExRNA | 198
high throughput nucleotide sequencing assay evidence | fission_yeast_phenotype | 206
Inferred from Experiment | cellular_component | 275
Inferred from Physical Interaction | cellular_component | 280
Inferred from Experiment | biological_process | 336
Non-traceable Author Statement | biological_process | 351
Inferred from Sequence or Structural Similarity | sequence | 355
Inferred from Sequence or Structural Similarity | cellular_component | 395
western blot evidence used in manual assertion | PomGeneExProt | 442
Inferred from Sequence or Structural Similarity | molecular_function | 463
experimental phenotypic evidence | fission_yeast_phenotype | 493
Inferred from Electronic Annotation | biological_process | 521
Inferred by Curator | cellular_component | 535
Inferred from Sequence or Structural Similarity | biological_process | 551
Inferred from Experiment | molecular_function | 557
Inferred from Genetic Interaction | biological_process | 603
mass spectrometry evidence | PomGeneExProt | 614
microscopy evidence used in manual assertion | fission_yeast_phenotype | 659
Inferred from Direct Assay | biological_process | 719
ribosome profiling evidence | PomGeneExRD | 734
quantitative PCR | fission_yeast_phenotype | 792
northern assay evidence used in manual assertion | PomGeneExRNA | 830
Inferred from Mutant Phenotype | molecular_function | 837
Inferred from Electronic Annotation | cellular_component | 892
Inferred from Biological aspect of Ancestor | molecular_function | 893
Co-immunoprecipitation experiment | fission_yeast_phenotype | 959
Inferred from Biological aspect of Ancestor | cellular_component | 980
Inferred by Curator | biological_process | 1128
Substance quantification evidence | fission_yeast_phenotype | 1136
Inferred from Sequence Model | molecular_function | 1175
competitive growth assay evidence | fission_yeast_phenotype | 1194
Inferred from Sequence Orthology | molecular_function | 1335
Inferred from Biological aspect of Ancestor | biological_process | 1456
Inferred from Sequence Orthology | cellular_component | 1496
Inferred from high throughput mutant phenotype | molecular_function | 1535
Chromatin immunoprecipitation experiment | fission_yeast_phenotype | 1877
Enzyme assay data | fission_yeast_phenotype | 1877
Other | fission_yeast_phenotype | 1927
Inferred from Electronic Annotation | molecular_function | 1944
Inferred from Direct Assay | molecular_function | 1956
Inferred from Sequence Orthology | biological_process | 2034
Flow cytometry data | fission_yeast_phenotype | 2167
gel electrophoresis evidence | fission_yeast_phenotype | 2462
Inferred from Physical Interaction | molecular_function | 2578
reporter gene assay evidence | fission_yeast_phenotype | 2827
Inferred from Direct Assay | PSI-MOD | 3099
mass spectrometry evidence | PSI-MOD | 3202
expression microarray evidence | PomGeneExRNA | 3416
transcript expression level evidence | fission_yeast_phenotype | 3780
Inferred from Mutant Phenotype | biological_process | 3816
RNA-sequencing evidence | PomGeneExRNA | 3819
Western blot assay | fission_yeast_phenotype | 4270
Inferred from Direct Assay | cellular_component | 5444
Inferred from high throughput direct assay | cellular_component | 6843
experimental evidence | PSI-MOD | 8141
mass spectrometry evidence | gene_ex | 13682
experimental evidence | gene_ex | 20120
tryptic phosphopeptide mapping assay evidence used in automatic assertion | PSI-MOD | 34008
cell growth assay evidence | fission_yeast_phenotype | 34214
Microscopy | fission_yeast_phenotype | 37251
(126 rows)
annotation counts by evidence code and cv type, sorted by cv evidence code:
ev_code | cv_name | count
----------------------------------------------------------------------------------+--------------------------+-------
Chromatin immunoprecipitation experiment | fission_yeast_phenotype | 1877
Chromatography evidence | fission_yeast_phenotype | 69
Co-immunoprecipitation experiment | fission_yeast_phenotype | 959
Electrophoretic mobility shift assay data | fission_yeast_phenotype | 173
Enzyme assay data | fission_yeast_phenotype | 1877
Epitope-tagged protein immunolocalization experiment data | fission_yeast_phenotype | 47
Flow cytometry data | fission_yeast_phenotype | 2167
Immunolocalization experiment data | fission_yeast_phenotype | 23
Inferred by Curator | biological_process | 1128
Inferred by Curator | cellular_component | 535
Inferred by Curator | molecular_function | 137
Inferred from Biological aspect of Ancestor | biological_process | 1456
Inferred from Biological aspect of Ancestor | cellular_component | 980
Inferred from Biological aspect of Ancestor | molecular_function | 893
Inferred from Direct Assay | PSI-MOD | 3099
Inferred from Direct Assay | biological_process | 719
Inferred from Direct Assay | cellular_component | 5444
Inferred from Direct Assay | misc | 1
Inferred from Direct Assay | molecular_function | 1956
Inferred from Direct Assay | sequence | 2
Inferred from Direct Assay | subunit_composition | 4
Inferred from Electronic Annotation | biological_process | 521
Inferred from Electronic Annotation | cellular_component | 892
Inferred from Electronic Annotation | molecular_function | 1944
Inferred from Experiment | biological_process | 336
Inferred from Experiment | cellular_component | 275
Inferred from Experiment | molecular_function | 557
Inferred from Expression Pattern | biological_process | 18
Inferred from Genetic Interaction | biological_process | 603
Inferred from Genetic Interaction | cellular_component | 46
Inferred from Genetic Interaction | molecular_function | 125
Inferred from Key Residues | molecular_function | 1
Inferred from Mutant Phenotype | PSI-MOD | 1
Inferred from Mutant Phenotype | biological_process | 3816
Inferred from Mutant Phenotype | cellular_component | 56
Inferred from Mutant Phenotype | misc | 4
Inferred from Mutant Phenotype | molecular_function | 837
Inferred from Mutant Phenotype | sequence | 8
Inferred from Physical Interaction | biological_process | 86
Inferred from Physical Interaction | cellular_component | 280
Inferred from Physical Interaction | misc | 2
Inferred from Physical Interaction | molecular_function | 2578
Inferred from Sequence Model | PSI-MOD | 2
Inferred from Sequence Model | biological_process | 169
Inferred from Sequence Model | cellular_component | 95
Inferred from Sequence Model | molecular_function | 1175
Inferred from Sequence Orthology | biological_process | 2034
Inferred from Sequence Orthology | cellular_component | 1496
Inferred from Sequence Orthology | molecular_function | 1335
Inferred from Sequence or Structural Similarity | PSI-MOD | 101
Inferred from Sequence or Structural Similarity | PomBase family or domain | 5
Inferred from Sequence or Structural Similarity | biological_process | 551
Inferred from Sequence or Structural Similarity | cellular_component | 395
Inferred from Sequence or Structural Similarity | genome_org | 13
Inferred from Sequence or Structural Similarity | m_f_g | 42
Inferred from Sequence or Structural Similarity | misc | 1
Inferred from Sequence or Structural Similarity | molecular_function | 463
Inferred from Sequence or Structural Similarity | sequence | 355
Inferred from Sequence or Structural Similarity | subunit_composition | 1
Inferred from Sequence or Structural Similarity | warning | 101
Inferred from high throughput direct assay | biological_process | 17
Inferred from high throughput direct assay | cellular_component | 6843
Inferred from high throughput direct assay | molecular_function | 17
Inferred from high throughput mutant phenotype | molecular_function | 1535
Microscopy | PomGeneExProt | 5
Microscopy | fission_yeast_phenotype | 37251
Non-traceable Author Statement | biological_process | 351
Non-traceable Author Statement | cellular_component | 176
Non-traceable Author Statement | complementation | 1
Non-traceable Author Statement | molecular_function | 159
Northern assay evidence | PomGeneExRNA | 109
Northern assay evidence | fission_yeast_phenotype | 118
Other | fission_yeast_phenotype | 1927
Other direct assay | fission_yeast_phenotype | 9
Particle size and count assay | fission_yeast_phenotype | 30
Plasmid maintenance assay evidence | fission_yeast_phenotype | 81
RNA protection assay evidence | PomGeneExRNA | 58
RNA-sequencing evidence | PomGeneExRNA | 3819
Substance quantification evidence | fission_yeast_phenotype | 1136
Traceable Author Statement | PSI-MOD | 1
Traceable Author Statement | PomBase family or domain | 5
Traceable Author Statement | biological_process | 142
Traceable Author Statement | cellular_component | 101
Traceable Author Statement | molecular_function | 138
Traceable Author Statement | sequence | 2
Western blot assay | fission_yeast_phenotype | 4270
Western blot evidence | PomGeneExProt | 59
cell growth assay evidence | fission_yeast_phenotype | 34214
competitive growth assay evidence | fission_yeast_phenotype | 1194
experimental evidence | PSI-MOD | 8141
experimental evidence | PomGeneExProt | 1
experimental evidence | PomGeneExRNA | 198
experimental evidence | gene_ex | 20120
experimental phenotypic evidence | fission_yeast_phenotype | 493
expression microarray evidence | PomGeneExRNA | 3416
fusion protein localization evidence | PomGeneExProt | 11
gel electrophoresis evidence | fission_yeast_phenotype | 2462
high throughput nucleotide sequencing assay evidence | fission_yeast_phenotype | 206
immunofluorescence evidence | PomGeneExProt | 6
in situ hybridization assay evidence | gene_ex | 14
in situ hybridization evidence used in manual assertion | PomGeneExRNA | 3
mass spectrometry evidence | PSI-MOD | 3202
mass spectrometry evidence | PomGeneExProt | 614
mass spectrometry evidence | gene_ex | 13682
microscopy evidence used in manual assertion | fission_yeast_phenotype | 659
northern assay evidence used in manual assertion | PomGeneExProt | 6
northern assay evidence used in manual assertion | PomGeneExRNA | 830
protein expression level evidence based on western blot used in manual assertion | gene_ex | 2
quantitative PCR | PomGeneExProt | 3
quantitative PCR | PomGeneExRNA | 109
quantitative PCR | fission_yeast_phenotype | 792
quantitative polymerase chain reaction evidence used in manual assertion | PomGeneExRNA | 8
reporter gene assay evidence | PomGeneExProt | 134
reporter gene assay evidence | PomGeneExRNA | 12
reporter gene assay evidence | fission_yeast_phenotype | 2827
reverse transcription polymerase chain reaction transcription evidence | PomGeneExRNA | 60
ribosome profiling evidence | PomGeneExRD | 734
sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | PomGeneExProt | 2
sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | fission_yeast_phenotype | 22
transcript expression level evidence | PomGeneExRNA | 16
transcript expression level evidence | fission_yeast_phenotype | 3780
tryptic phosphopeptide mapping assay evidence used in automatic assertion | PSI-MOD | 34008
tryptic phosphopeptide mapping assay evidence used in automatic assertion | fission_yeast_phenotype | 149
western blot evidence used in manual assertion | PomGeneExProt | 442
western blot evidence used in manual assertion | PomGeneExRNA | 13
western blot evidence used in manual assertion | fission_yeast_phenotype | 147
(126 rows)
total:
count
--------
343797
(1 row)
counts of annotation from Canto, by type:
count | cv_name
-------+------------------------------------
41 | PomGeneExProt
147 | PomGeneExRNA
2168 | PSI-MOD
4348 | molecular_function
4389 | biological_process
5031 | cellular_component
33153 | PomBase annotation extension terms
65179 | fission_yeast_phenotype
(8 rows)
total
-------
81303
(1 row)