counts of all annotation by type: count | cv_name -------+-------------------------------------- 6 | external_link 22 | ex_tools 27 | cat_act 28 | pathway 90 | m_f_g 190 | subunit_composition 244 | genome_org 422 | misc 451 | complementation 734 | PomGeneExRD 831 | EC numbers 958 | sequence 964 | name_description 1285 | PomGeneExProt 1807 | warning 1868 | PomBase family or domain 4054 | kegg_pombe_pathway 4579 | mondo 5146 | PomBase gene characterisation status 8667 | PomGeneExRNA 11935 | biological_process 13840 | molecular_function 17651 | cellular_component 25157 | species_dist 33818 | gene_ex 49528 | PSI-MOD 61474 | PomBase gene products 99057 | fission_yeast_phenotype (28 rows) annotation counts by evidence code and cv type, sorted by cv name: ev_code | cv_name | count ----------------------------------------------------------------------------------+--------------------------+------- Inferred from Direct Assay | PSI-MOD | 3105 Inferred from Mutant Phenotype | PSI-MOD | 1 Inferred from Sequence Model | PSI-MOD | 2 Inferred from Sequence or Structural Similarity | PSI-MOD | 101 Traceable Author Statement | PSI-MOD | 1 experimental evidence | PSI-MOD | 8141 mass spectrometry evidence | PSI-MOD | 3202 tryptic phosphopeptide mapping assay evidence used in automatic assertion | PSI-MOD | 34916 Inferred from Sequence or Structural Similarity | PomBase family or domain | 5 Traceable Author Statement | PomBase family or domain | 5 Microscopy | PomGeneExProt | 5 Western blot evidence | PomGeneExProt | 59 experimental evidence | PomGeneExProt | 1 fusion protein localization evidence | PomGeneExProt | 11 immunofluorescence evidence | PomGeneExProt | 6 mass spectrometry evidence | PomGeneExProt | 614 northern assay evidence used in manual assertion | PomGeneExProt | 6 quantitative PCR | PomGeneExProt | 3 reporter gene assay evidence | PomGeneExProt | 134 sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | PomGeneExProt | 2 western blot evidence used in manual assertion | PomGeneExProt | 438 ribosome profiling evidence | PomGeneExRD | 734 Northern assay evidence | PomGeneExRNA | 109 RNA protection assay evidence | PomGeneExRNA | 58 RNA-sequencing evidence | PomGeneExRNA | 3818 experimental evidence | PomGeneExRNA | 198 expression microarray evidence | PomGeneExRNA | 3416 in situ hybridization evidence used in manual assertion | PomGeneExRNA | 3 northern assay evidence used in manual assertion | PomGeneExRNA | 830 quantitative PCR | PomGeneExRNA | 109 quantitative polymerase chain reaction evidence used in manual assertion | PomGeneExRNA | 8 reporter gene assay evidence | PomGeneExRNA | 12 reverse transcription polymerase chain reaction transcription evidence | PomGeneExRNA | 60 transcript expression level evidence | PomGeneExRNA | 16 western blot evidence used in manual assertion | PomGeneExRNA | 13 Inferred by Curator | biological_process | 1127 Inferred from Biological aspect of Ancestor | biological_process | 1406 Inferred from Direct Assay | biological_process | 724 Inferred from Electronic Annotation | biological_process | 516 Inferred from Experiment | biological_process | 341 Inferred from Expression Pattern | biological_process | 18 Inferred from Genetic Interaction | biological_process | 603 Inferred from Mutant Phenotype | biological_process | 3817 Inferred from Physical Interaction | biological_process | 86 Inferred from Sequence Model | biological_process | 182 Inferred from Sequence Orthology | biological_process | 2044 Inferred from Sequence or Structural Similarity | biological_process | 554 Inferred from high throughput direct assay | biological_process | 17 Non-traceable Author Statement | biological_process | 359 Traceable Author Statement | biological_process | 141 Inferred by Curator | cellular_component | 535 Inferred from Biological aspect of Ancestor | cellular_component | 973 Inferred from Direct Assay | cellular_component | 5474 Inferred from Electronic Annotation | cellular_component | 891 Inferred from Experiment | cellular_component | 290 Inferred from Genetic Interaction | cellular_component | 46 Inferred from Mutant Phenotype | cellular_component | 56 Inferred from Physical Interaction | cellular_component | 282 Inferred from Sequence Model | cellular_component | 95 Inferred from Sequence Orthology | cellular_component | 1489 Inferred from Sequence or Structural Similarity | cellular_component | 397 Inferred from high throughput direct assay | cellular_component | 6846 Non-traceable Author Statement | cellular_component | 176 Traceable Author Statement | cellular_component | 101 Non-traceable Author Statement | complementation | 1 Chromatin immunoprecipitation experiment | fission_yeast_phenotype | 1877 Chromatography evidence | fission_yeast_phenotype | 69 Co-immunoprecipitation experiment | fission_yeast_phenotype | 960 Electrophoretic mobility shift assay data | fission_yeast_phenotype | 173 Enzyme assay data | fission_yeast_phenotype | 1878 Epitope-tagged protein immunolocalization experiment data | fission_yeast_phenotype | 47 Flow cytometry data | fission_yeast_phenotype | 2167 Immunolocalization experiment data | fission_yeast_phenotype | 23 Microscopy | fission_yeast_phenotype | 37206 Northern assay evidence | fission_yeast_phenotype | 118 Other | fission_yeast_phenotype | 1963 Other direct assay | fission_yeast_phenotype | 9 Particle size and count assay | fission_yeast_phenotype | 30 Plasmid maintenance assay evidence | fission_yeast_phenotype | 81 Substance quantification evidence | fission_yeast_phenotype | 1136 Western blot assay | fission_yeast_phenotype | 4270 cell growth assay evidence | fission_yeast_phenotype | 34315 competitive growth assay evidence | fission_yeast_phenotype | 1194 experimental phenotypic evidence | fission_yeast_phenotype | 493 gel electrophoresis evidence | fission_yeast_phenotype | 2462 high throughput nucleotide sequencing assay evidence | fission_yeast_phenotype | 206 microscopy evidence used in manual assertion | fission_yeast_phenotype | 659 quantitative PCR | fission_yeast_phenotype | 792 reporter gene assay evidence | fission_yeast_phenotype | 2826 sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | fission_yeast_phenotype | 22 transcript expression level evidence | fission_yeast_phenotype | 3785 tryptic phosphopeptide mapping assay evidence used in automatic assertion | fission_yeast_phenotype | 149 western blot evidence used in manual assertion | fission_yeast_phenotype | 147 experimental evidence | gene_ex | 20120 in situ hybridization assay evidence | gene_ex | 14 mass spectrometry evidence | gene_ex | 13682 protein expression level evidence based on western blot used in manual assertion | gene_ex | 2 Inferred from Sequence or Structural Similarity | genome_org | 13 Inferred from Sequence or Structural Similarity | m_f_g | 42 Inferred from Direct Assay | misc | 1 Inferred from Mutant Phenotype | misc | 4 Inferred from Physical Interaction | misc | 2 Inferred from Sequence or Structural Similarity | misc | 1 Inferred by Curator | molecular_function | 137 Inferred from Biological aspect of Ancestor | molecular_function | 865 Inferred from Direct Assay | molecular_function | 1957 Inferred from Electronic Annotation | molecular_function | 1944 Inferred from Experiment | molecular_function | 557 Inferred from Genetic Interaction | molecular_function | 125 Inferred from Key Residues | molecular_function | 1 Inferred from Mutant Phenotype | molecular_function | 839 Inferred from Physical Interaction | molecular_function | 2580 Inferred from Sequence Model | molecular_function | 1183 Inferred from Sequence Orthology | molecular_function | 1336 Inferred from Sequence or Structural Similarity | molecular_function | 463 Inferred from high throughput direct assay | molecular_function | 17 Inferred from high throughput mutant phenotype | molecular_function | 1535 Non-traceable Author Statement | molecular_function | 163 Traceable Author Statement | molecular_function | 138 Inferred from Direct Assay | sequence | 2 Inferred from Mutant Phenotype | sequence | 8 Inferred from Sequence or Structural Similarity | sequence | 355 Traceable Author Statement | sequence | 2 Inferred from Direct Assay | subunit_composition | 4 Inferred from Sequence or Structural Similarity | subunit_composition | 1 Inferred from Sequence or Structural Similarity | warning | 101 (126 rows) annotation counts by evidence code and cv type, sorted by count: ev_code | cv_name | count ----------------------------------------------------------------------------------+--------------------------+------- Traceable Author Statement | PSI-MOD | 1 Inferred from Mutant Phenotype | PSI-MOD | 1 Inferred from Sequence or Structural Similarity | subunit_composition | 1 Inferred from Key Residues | molecular_function | 1 Inferred from Direct Assay | misc | 1 Non-traceable Author Statement | complementation | 1 Inferred from Sequence or Structural Similarity | misc | 1 experimental evidence | PomGeneExProt | 1 Inferred from Sequence Model | PSI-MOD | 2 Inferred from Direct Assay | sequence | 2 sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | PomGeneExProt | 2 Traceable Author Statement | sequence | 2 protein expression level evidence based on western blot used in manual assertion | gene_ex | 2 Inferred from Physical Interaction | misc | 2 quantitative PCR | PomGeneExProt | 3 in situ hybridization evidence used in manual assertion | PomGeneExRNA | 3 Inferred from Mutant Phenotype | misc | 4 Inferred from Direct Assay | subunit_composition | 4 Inferred from Sequence or Structural Similarity | PomBase family or domain | 5 Traceable Author Statement | PomBase family or domain | 5 Microscopy | PomGeneExProt | 5 northern assay evidence used in manual assertion | PomGeneExProt | 6 immunofluorescence evidence | PomGeneExProt | 6 Inferred from Mutant Phenotype | sequence | 8 quantitative polymerase chain reaction evidence used in manual assertion | PomGeneExRNA | 8 Other direct assay | fission_yeast_phenotype | 9 fusion protein localization evidence | PomGeneExProt | 11 reporter gene assay evidence | PomGeneExRNA | 12 western blot evidence used in manual assertion | PomGeneExRNA | 13 Inferred from Sequence or Structural Similarity | genome_org | 13 in situ hybridization assay evidence | gene_ex | 14 transcript expression level evidence | PomGeneExRNA | 16 Inferred from high throughput direct assay | biological_process | 17 Inferred from high throughput direct assay | molecular_function | 17 Inferred from Expression Pattern | biological_process | 18 sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | fission_yeast_phenotype | 22 Immunolocalization experiment data | fission_yeast_phenotype | 23 Particle size and count assay | fission_yeast_phenotype | 30 Inferred from Sequence or Structural Similarity | m_f_g | 42 Inferred from Genetic Interaction | cellular_component | 46 Epitope-tagged protein immunolocalization experiment data | fission_yeast_phenotype | 47 Inferred from Mutant Phenotype | cellular_component | 56 RNA protection assay evidence | PomGeneExRNA | 58 Western blot evidence | PomGeneExProt | 59 reverse transcription polymerase chain reaction transcription evidence | PomGeneExRNA | 60 Chromatography evidence | fission_yeast_phenotype | 69 Plasmid maintenance assay evidence | fission_yeast_phenotype | 81 Inferred from Physical Interaction | biological_process | 86 Inferred from Sequence Model | cellular_component | 95 Inferred from Sequence or Structural Similarity | PSI-MOD | 101 Traceable Author Statement | cellular_component | 101 Inferred from Sequence or Structural Similarity | warning | 101 Northern assay evidence | PomGeneExRNA | 109 quantitative PCR | PomGeneExRNA | 109 Northern assay evidence | fission_yeast_phenotype | 118 Inferred from Genetic Interaction | molecular_function | 125 reporter gene assay evidence | PomGeneExProt | 134 Inferred by Curator | molecular_function | 137 Traceable Author Statement | molecular_function | 138 Traceable Author Statement | biological_process | 141 western blot evidence used in manual assertion | fission_yeast_phenotype | 147 tryptic phosphopeptide mapping assay evidence used in automatic assertion | fission_yeast_phenotype | 149 Non-traceable Author Statement | molecular_function | 163 Electrophoretic mobility shift assay data | fission_yeast_phenotype | 173 Non-traceable Author Statement | cellular_component | 176 Inferred from Sequence Model | biological_process | 182 experimental evidence | PomGeneExRNA | 198 high throughput nucleotide sequencing assay evidence | fission_yeast_phenotype | 206 Inferred from Physical Interaction | cellular_component | 282 Inferred from Experiment | cellular_component | 290 Inferred from Experiment | biological_process | 341 Inferred from Sequence or Structural Similarity | sequence | 355 Non-traceable Author Statement | biological_process | 359 Inferred from Sequence or Structural Similarity | cellular_component | 397 western blot evidence used in manual assertion | PomGeneExProt | 438 Inferred from Sequence or Structural Similarity | molecular_function | 463 experimental phenotypic evidence | fission_yeast_phenotype | 493 Inferred from Electronic Annotation | biological_process | 516 Inferred by Curator | cellular_component | 535 Inferred from Sequence or Structural Similarity | biological_process | 554 Inferred from Experiment | molecular_function | 557 Inferred from Genetic Interaction | biological_process | 603 mass spectrometry evidence | PomGeneExProt | 614 microscopy evidence used in manual assertion | fission_yeast_phenotype | 659 Inferred from Direct Assay | biological_process | 724 ribosome profiling evidence | PomGeneExRD | 734 quantitative PCR | fission_yeast_phenotype | 792 northern assay evidence used in manual assertion | PomGeneExRNA | 830 Inferred from Mutant Phenotype | molecular_function | 839 Inferred from Biological aspect of Ancestor | molecular_function | 865 Inferred from Electronic Annotation | cellular_component | 891 Co-immunoprecipitation experiment | fission_yeast_phenotype | 960 Inferred from Biological aspect of Ancestor | cellular_component | 973 Inferred by Curator | biological_process | 1127 Substance quantification evidence | fission_yeast_phenotype | 1136 Inferred from Sequence Model | molecular_function | 1183 competitive growth assay evidence | fission_yeast_phenotype | 1194 Inferred from Sequence Orthology | molecular_function | 1336 Inferred from Biological aspect of Ancestor | biological_process | 1406 Inferred from Sequence Orthology | cellular_component | 1489 Inferred from high throughput mutant phenotype | molecular_function | 1535 Chromatin immunoprecipitation experiment | fission_yeast_phenotype | 1877 Enzyme assay data | fission_yeast_phenotype | 1878 Inferred from Electronic Annotation | molecular_function | 1944 Inferred from Direct Assay | molecular_function | 1957 Other | fission_yeast_phenotype | 1963 Inferred from Sequence Orthology | biological_process | 2044 Flow cytometry data | fission_yeast_phenotype | 2167 gel electrophoresis evidence | fission_yeast_phenotype | 2462 Inferred from Physical Interaction | molecular_function | 2580 reporter gene assay evidence | fission_yeast_phenotype | 2826 Inferred from Direct Assay | PSI-MOD | 3105 mass spectrometry evidence | PSI-MOD | 3202 expression microarray evidence | PomGeneExRNA | 3416 transcript expression level evidence | fission_yeast_phenotype | 3785 Inferred from Mutant Phenotype | biological_process | 3817 RNA-sequencing evidence | PomGeneExRNA | 3818 Western blot assay | fission_yeast_phenotype | 4270 Inferred from Direct Assay | cellular_component | 5474 Inferred from high throughput direct assay | cellular_component | 6846 experimental evidence | PSI-MOD | 8141 mass spectrometry evidence | gene_ex | 13682 experimental evidence | gene_ex | 20120 cell growth assay evidence | fission_yeast_phenotype | 34315 tryptic phosphopeptide mapping assay evidence used in automatic assertion | PSI-MOD | 34916 Microscopy | fission_yeast_phenotype | 37206 (126 rows) annotation counts by evidence code and cv type, sorted by cv evidence code: ev_code | cv_name | count ----------------------------------------------------------------------------------+--------------------------+------- Chromatin immunoprecipitation experiment | fission_yeast_phenotype | 1877 Chromatography evidence | fission_yeast_phenotype | 69 Co-immunoprecipitation experiment | fission_yeast_phenotype | 960 Electrophoretic mobility shift assay data | fission_yeast_phenotype | 173 Enzyme assay data | fission_yeast_phenotype | 1878 Epitope-tagged protein immunolocalization experiment data | fission_yeast_phenotype | 47 Flow cytometry data | fission_yeast_phenotype | 2167 Immunolocalization experiment data | fission_yeast_phenotype | 23 Inferred by Curator | biological_process | 1127 Inferred by Curator | cellular_component | 535 Inferred by Curator | molecular_function | 137 Inferred from Biological aspect of Ancestor | biological_process | 1406 Inferred from Biological aspect of Ancestor | cellular_component | 973 Inferred from Biological aspect of Ancestor | molecular_function | 865 Inferred from Direct Assay | PSI-MOD | 3105 Inferred from Direct Assay | biological_process | 724 Inferred from Direct Assay | cellular_component | 5474 Inferred from Direct Assay | misc | 1 Inferred from Direct Assay | molecular_function | 1957 Inferred from Direct Assay | sequence | 2 Inferred from Direct Assay | subunit_composition | 4 Inferred from Electronic Annotation | biological_process | 516 Inferred from Electronic Annotation | cellular_component | 891 Inferred from Electronic Annotation | molecular_function | 1944 Inferred from Experiment | biological_process | 341 Inferred from Experiment | cellular_component | 290 Inferred from Experiment | molecular_function | 557 Inferred from Expression Pattern | biological_process | 18 Inferred from Genetic Interaction | biological_process | 603 Inferred from Genetic Interaction | cellular_component | 46 Inferred from Genetic Interaction | molecular_function | 125 Inferred from Key Residues | molecular_function | 1 Inferred from Mutant Phenotype | PSI-MOD | 1 Inferred from Mutant Phenotype | biological_process | 3817 Inferred from Mutant Phenotype | cellular_component | 56 Inferred from Mutant Phenotype | misc | 4 Inferred from Mutant Phenotype | molecular_function | 839 Inferred from Mutant Phenotype | sequence | 8 Inferred from Physical Interaction | biological_process | 86 Inferred from Physical Interaction | cellular_component | 282 Inferred from Physical Interaction | misc | 2 Inferred from Physical Interaction | molecular_function | 2580 Inferred from Sequence Model | PSI-MOD | 2 Inferred from Sequence Model | biological_process | 182 Inferred from Sequence Model | cellular_component | 95 Inferred from Sequence Model | molecular_function | 1183 Inferred from Sequence Orthology | biological_process | 2044 Inferred from Sequence Orthology | cellular_component | 1489 Inferred from Sequence Orthology | molecular_function | 1336 Inferred from Sequence or Structural Similarity | PSI-MOD | 101 Inferred from Sequence or Structural Similarity | PomBase family or domain | 5 Inferred from Sequence or Structural Similarity | biological_process | 554 Inferred from Sequence or Structural Similarity | cellular_component | 397 Inferred from Sequence or Structural Similarity | genome_org | 13 Inferred from Sequence or Structural Similarity | m_f_g | 42 Inferred from Sequence or Structural Similarity | misc | 1 Inferred from Sequence or Structural Similarity | molecular_function | 463 Inferred from Sequence or Structural Similarity | sequence | 355 Inferred from Sequence or Structural Similarity | subunit_composition | 1 Inferred from Sequence or Structural Similarity | warning | 101 Inferred from high throughput direct assay | biological_process | 17 Inferred from high throughput direct assay | cellular_component | 6846 Inferred from high throughput direct assay | molecular_function | 17 Inferred from high throughput mutant phenotype | molecular_function | 1535 Microscopy | PomGeneExProt | 5 Microscopy | fission_yeast_phenotype | 37206 Non-traceable Author Statement | biological_process | 359 Non-traceable Author Statement | cellular_component | 176 Non-traceable Author Statement | complementation | 1 Non-traceable Author Statement | molecular_function | 163 Northern assay evidence | PomGeneExRNA | 109 Northern assay evidence | fission_yeast_phenotype | 118 Other | fission_yeast_phenotype | 1963 Other direct assay | fission_yeast_phenotype | 9 Particle size and count assay | fission_yeast_phenotype | 30 Plasmid maintenance assay evidence | fission_yeast_phenotype | 81 RNA protection assay evidence | PomGeneExRNA | 58 RNA-sequencing evidence | PomGeneExRNA | 3818 Substance quantification evidence | fission_yeast_phenotype | 1136 Traceable Author Statement | PSI-MOD | 1 Traceable Author Statement | PomBase family or domain | 5 Traceable Author Statement | biological_process | 141 Traceable Author Statement | cellular_component | 101 Traceable Author Statement | molecular_function | 138 Traceable Author Statement | sequence | 2 Western blot assay | fission_yeast_phenotype | 4270 Western blot evidence | PomGeneExProt | 59 cell growth assay evidence | fission_yeast_phenotype | 34315 competitive growth assay evidence | fission_yeast_phenotype | 1194 experimental evidence | PSI-MOD | 8141 experimental evidence | PomGeneExProt | 1 experimental evidence | PomGeneExRNA | 198 experimental evidence | gene_ex | 20120 experimental phenotypic evidence | fission_yeast_phenotype | 493 expression microarray evidence | PomGeneExRNA | 3416 fusion protein localization evidence | PomGeneExProt | 11 gel electrophoresis evidence | fission_yeast_phenotype | 2462 high throughput nucleotide sequencing assay evidence | fission_yeast_phenotype | 206 immunofluorescence evidence | PomGeneExProt | 6 in situ hybridization assay evidence | gene_ex | 14 in situ hybridization evidence used in manual assertion | PomGeneExRNA | 3 mass spectrometry evidence | PSI-MOD | 3202 mass spectrometry evidence | PomGeneExProt | 614 mass spectrometry evidence | gene_ex | 13682 microscopy evidence used in manual assertion | fission_yeast_phenotype | 659 northern assay evidence used in manual assertion | PomGeneExProt | 6 northern assay evidence used in manual assertion | PomGeneExRNA | 830 protein expression level evidence based on western blot used in manual assertion | gene_ex | 2 quantitative PCR | PomGeneExProt | 3 quantitative PCR | PomGeneExRNA | 109 quantitative PCR | fission_yeast_phenotype | 792 quantitative polymerase chain reaction evidence used in manual assertion | PomGeneExRNA | 8 reporter gene assay evidence | PomGeneExProt | 134 reporter gene assay evidence | PomGeneExRNA | 12 reporter gene assay evidence | fission_yeast_phenotype | 2826 reverse transcription polymerase chain reaction transcription evidence | PomGeneExRNA | 60 ribosome profiling evidence | PomGeneExRD | 734 sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | PomGeneExProt | 2 sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | fission_yeast_phenotype | 22 transcript expression level evidence | PomGeneExRNA | 16 transcript expression level evidence | fission_yeast_phenotype | 3785 tryptic phosphopeptide mapping assay evidence used in automatic assertion | PSI-MOD | 34916 tryptic phosphopeptide mapping assay evidence used in automatic assertion | fission_yeast_phenotype | 149 western blot evidence used in manual assertion | PomGeneExProt | 438 western blot evidence used in manual assertion | PomGeneExRNA | 13 western blot evidence used in manual assertion | fission_yeast_phenotype | 147 (126 rows) total: count -------- 344833 (1 row) counts of annotation from Canto, by type: count | cv_name -------+------------------------------------ 41 | PomGeneExProt 147 | PomGeneExRNA 2174 | PSI-MOD 4350 | molecular_function 4395 | biological_process 5080 | cellular_component 33241 | PomBase annotation extension terms 65281 | fission_yeast_phenotype (8 rows) total ------- 81468 (1 row)