counts of all annotation by type: count | cv_name --------+-------------------------------------- 6 | external_link 22 | ex_tools 23 | pathway 26 | cat_act 76 | m_f_g 162 | genome_org 196 | subunit_composition 407 | EC numbers 445 | misc 465 | complementation 731 | PomGeneExRD 1009 | name_description 1662 | sequence 1705 | warning 1864 | pombase_family_or_domain 3310 | mondo 4329 | PomGeneExProt 5146 | PomBase gene characterisation status 9067 | PomGeneExRNA 11781 | biological_process 17851 | cellular_component 19007 | molecular_function 25226 | species_dist 33667 | gene_ex 50878 | PSI-MOD 68488 | PomBase gene products 196610 | fission_yeast_phenotype (27 rows) annotation counts by evidence code and cv type, sorted by cv name: ev_code | cv_name | count ----------------------------------------------------------------------------------+--------------------------+-------- Inferred from Direct Assay | PSI-MOD | 2489 Inferred from Sequence Model | PSI-MOD | 1 Inferred from Sequence or Structural Similarity | PSI-MOD | 10 author statement without traceable support used in manual assertion | PSI-MOD | 1 combinatorial computational and experimental evidence used in manual assertion | PSI-MOD | 1 curator inference used in manual assertion | PSI-MOD | 21 differential hybridization evidence | PSI-MOD | 326 experimental evidence | PSI-MOD | 3044 experimental evidence used in manual assertion | PSI-MOD | 75 high throughput evidence used in manual assertion | PSI-MOD | 866 mass spectrometry evidence | PSI-MOD | 7109 match to sequence model evidence used in manual assertion | PSI-MOD | 1121 neural network method evidence used in manual assertion | PSI-MOD | 13 sequence similarity evidence used in manual assertion | PSI-MOD | 264 tryptic phosphopeptide mapping assay evidence used in automatic assertion | PSI-MOD | 35537 Western blot evidence | PomGeneExProt | 115 experimental evidence | PomGeneExProt | 1 fusion protein localization evidence | PomGeneExProt | 11 high throughput evidence used in manual assertion | PomGeneExProt | 2987 immunofluorescence evidence | PomGeneExProt | 6 mass spectrometry evidence | PomGeneExProt | 614 microscopy evidence | PomGeneExProt | 19 northern assay evidence used in manual assertion | PomGeneExProt | 5 reporter gene assay evidence | PomGeneExProt | 129 sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | PomGeneExProt | 2 western blot evidence used in manual assertion | PomGeneExProt | 436 ribosome profiling evidence | PomGeneExRD | 731 Northern assay evidence | PomGeneExRNA | 125 RNA protection assay evidence | PomGeneExRNA | 58 RNA-sequencing evidence | PomGeneExRNA | 3982 differential hybridization evidence | PomGeneExRNA | 1 experimental evidence | PomGeneExRNA | 198 expression microarray evidence | PomGeneExRNA | 3614 in situ hybridization evidence used in manual assertion | PomGeneExRNA | 5 northern assay evidence used in manual assertion | PomGeneExRNA | 796 quantitative PCR | PomGeneExRNA | 153 quantitative polymerase chain reaction evidence used in manual assertion | PomGeneExRNA | 8 reporter gene assay evidence | PomGeneExRNA | 19 reverse transcription polymerase chain reaction transcription evidence | PomGeneExRNA | 60 transcript expression level evidence | PomGeneExRNA | 16 western blot evidence used in manual assertion | PomGeneExRNA | 14 Inferred by Curator | biological_process | 903 Inferred from Biological aspect of Ancestor | biological_process | 2375 Inferred from Direct Assay | biological_process | 649 Inferred from Electronic Annotation | biological_process | 364 Inferred from Experiment | biological_process | 782 Inferred from Expression Pattern | biological_process | 8 Inferred from Genetic Interaction | biological_process | 534 Inferred from Mutant Phenotype | biological_process | 3731 Inferred from Physical Interaction | biological_process | 57 Inferred from Sequence Model | biological_process | 101 Inferred from Sequence Orthology | biological_process | 1255 Inferred from Sequence or Structural Similarity | biological_process | 343 Inferred from high throughput direct assay | biological_process | 68 Non-traceable Author Statement | biological_process | 259 Traceable Author Statement | biological_process | 161 Inferred by Curator | cellular_component | 567 Inferred from Biological aspect of Ancestor | cellular_component | 1816 Inferred from Direct Assay | cellular_component | 6209 Inferred from Electronic Annotation | cellular_component | 279 Inferred from Experiment | cellular_component | 611 Inferred from Genetic Interaction | cellular_component | 45 Inferred from Mutant Phenotype | cellular_component | 59 Inferred from Physical Interaction | cellular_component | 294 Inferred from Sequence Model | cellular_component | 56 Inferred from Sequence Orthology | cellular_component | 788 Inferred from Sequence or Structural Similarity | cellular_component | 225 Inferred from high throughput direct assay | cellular_component | 6646 Non-traceable Author Statement | cellular_component | 84 Traceable Author Statement | cellular_component | 103 Non-traceable Author Statement | complementation | 1 Chromatin immunoprecipitation experiment | fission_yeast_phenotype | 2686 Chromatography evidence | fission_yeast_phenotype | 82 Co-immunoprecipitation experiment | fission_yeast_phenotype | 1272 ECO:0006068 | fission_yeast_phenotype | 229 Electrophoretic mobility shift assay data | fission_yeast_phenotype | 256 Enzyme assay data | fission_yeast_phenotype | 2524 Epitope-tagged protein immunolocalization experiment data | fission_yeast_phenotype | 61 Flow cytometry data | fission_yeast_phenotype | 2204 Immunolocalization experiment data | fission_yeast_phenotype | 35 Northern assay evidence | fission_yeast_phenotype | 117 Other | fission_yeast_phenotype | 2701 Other direct assay | fission_yeast_phenotype | 8 Particle size and count assay | fission_yeast_phenotype | 44 Plasmid maintenance assay evidence | fission_yeast_phenotype | 82 Substance quantification | fission_yeast_phenotype | 1246 Western blot assay | fission_yeast_phenotype | 5180 cell growth assay evidence | fission_yeast_phenotype | 117305 cell viability assay evidence | fission_yeast_phenotype | 2163 competitive growth assay evidence | fission_yeast_phenotype | 1667 experimental phenotypic evidence | fission_yeast_phenotype | 493 gel electrophoresis evidence | fission_yeast_phenotype | 2654 high throughput evidence used in manual assertion | fission_yeast_phenotype | 1964 high throughput nucleotide sequencing assay evidence | fission_yeast_phenotype | 206 microscopy evidence | fission_yeast_phenotype | 40313 microscopy evidence used in manual assertion | fission_yeast_phenotype | 659 quantitative PCR | fission_yeast_phenotype | 1343 reporter gene assay evidence | fission_yeast_phenotype | 3622 sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | fission_yeast_phenotype | 22 transcript expression level evidence | fission_yeast_phenotype | 5176 tryptic phosphopeptide mapping assay evidence used in automatic assertion | fission_yeast_phenotype | 149 western blot evidence used in manual assertion | fission_yeast_phenotype | 147 RNA detection assay evidence | gene_ex | 2 experimental evidence | gene_ex | 19958 in situ hybridization assay evidence | gene_ex | 14 mass spectrometry evidence | gene_ex | 13682 microscopy evidence | gene_ex | 9 protein expression level evidence based on western blot used in manual assertion | gene_ex | 2 Inferred from Sequence or Structural Similarity | genome_org | 11 Inferred from Sequence or Structural Similarity | m_f_g | 41 Inferred from Direct Assay | misc | 1 Inferred from Mutant Phenotype | misc | 4 Inferred from Physical Interaction | misc | 2 Inferred from Sequence or Structural Similarity | misc | 1 Inferred by Curator | molecular_function | 190 Inferred from Biological aspect of Ancestor | molecular_function | 2351 Inferred from Direct Assay | molecular_function | 2151 Inferred from Electronic Annotation | molecular_function | 1504 Inferred from Experiment | molecular_function | 1156 Inferred from Genetic Interaction | molecular_function | 122 Inferred from Key Residues | molecular_function | 1 Inferred from Mutant Phenotype | molecular_function | 1071 Inferred from Physical Interaction | molecular_function | 2327 Inferred from Sequence Model | molecular_function | 894 Inferred from Sequence Orthology | molecular_function | 669 Inferred from Sequence or Structural Similarity | molecular_function | 273 Inferred from high throughput direct assay | molecular_function | 4510 Inferred from high throughput mutant phenotype | molecular_function | 1535 Non-traceable Author Statement | molecular_function | 105 Traceable Author Statement | molecular_function | 147 Inferred from Sequence or Structural Similarity | pombase_family_or_domain | 6 Traceable Author Statement | pombase_family_or_domain | 5 ECO:0000015 | sequence | 1 Inferred from Experiment | sequence | 10 author statement supported by traceable reference used in manual assertion | sequence | 1 curator inference used in manual assertion | sequence | 6 direct assay evidence used in manual assertion | sequence | 7 experimental evidence used in manual assertion | sequence | 4 match to sequence model evidence | sequence | 941 match to sequence model evidence used in manual assertion | sequence | 424 mutant phenotype evidence used in manual assertion | sequence | 10 sequence similarity evidence | sequence | 25 sequence similarity evidence used in manual assertion | sequence | 155 Inferred from Direct Assay | subunit_composition | 4 Inferred from Sequence or Structural Similarity | subunit_composition | 1 Inferred from Sequence or Structural Similarity | warning | 65 (146 rows) annotation counts by evidence code and cv type, sorted by count: ev_code | cv_name | count ----------------------------------------------------------------------------------+--------------------------+-------- Inferred from Sequence Model | PSI-MOD | 1 ECO:0000015 | sequence | 1 Inferred from Key Residues | molecular_function | 1 Inferred from Sequence or Structural Similarity | misc | 1 author statement supported by traceable reference used in manual assertion | sequence | 1 Inferred from Direct Assay | misc | 1 author statement without traceable support used in manual assertion | PSI-MOD | 1 Non-traceable Author Statement | complementation | 1 experimental evidence | PomGeneExProt | 1 differential hybridization evidence | PomGeneExRNA | 1 combinatorial computational and experimental evidence used in manual assertion | PSI-MOD | 1 Inferred from Sequence or Structural Similarity | subunit_composition | 1 protein expression level evidence based on western blot used in manual assertion | gene_ex | 2 Inferred from Physical Interaction | misc | 2 RNA detection assay evidence | gene_ex | 2 sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | PomGeneExProt | 2 experimental evidence used in manual assertion | sequence | 4 Inferred from Mutant Phenotype | misc | 4 Inferred from Direct Assay | subunit_composition | 4 Traceable Author Statement | pombase_family_or_domain | 5 northern assay evidence used in manual assertion | PomGeneExProt | 5 in situ hybridization evidence used in manual assertion | PomGeneExRNA | 5 immunofluorescence evidence | PomGeneExProt | 6 curator inference used in manual assertion | sequence | 6 Inferred from Sequence or Structural Similarity | pombase_family_or_domain | 6 direct assay evidence used in manual assertion | sequence | 7 quantitative polymerase chain reaction evidence used in manual assertion | PomGeneExRNA | 8 Other direct assay | fission_yeast_phenotype | 8 Inferred from Expression Pattern | biological_process | 8 microscopy evidence | gene_ex | 9 Inferred from Sequence or Structural Similarity | PSI-MOD | 10 mutant phenotype evidence used in manual assertion | sequence | 10 Inferred from Experiment | sequence | 10 Inferred from Sequence or Structural Similarity | genome_org | 11 fusion protein localization evidence | PomGeneExProt | 11 neural network method evidence used in manual assertion | PSI-MOD | 13 in situ hybridization assay evidence | gene_ex | 14 western blot evidence used in manual assertion | PomGeneExRNA | 14 transcript expression level evidence | PomGeneExRNA | 16 microscopy evidence | PomGeneExProt | 19 reporter gene assay evidence | PomGeneExRNA | 19 curator inference used in manual assertion | PSI-MOD | 21 sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | fission_yeast_phenotype | 22 sequence similarity evidence | sequence | 25 Immunolocalization experiment data | fission_yeast_phenotype | 35 Inferred from Sequence or Structural Similarity | m_f_g | 41 Particle size and count assay | fission_yeast_phenotype | 44 Inferred from Genetic Interaction | cellular_component | 45 Inferred from Sequence Model | cellular_component | 56 Inferred from Physical Interaction | biological_process | 57 RNA protection assay evidence | PomGeneExRNA | 58 Inferred from Mutant Phenotype | cellular_component | 59 reverse transcription polymerase chain reaction transcription evidence | PomGeneExRNA | 60 Epitope-tagged protein immunolocalization experiment data | fission_yeast_phenotype | 61 Inferred from Sequence or Structural Similarity | warning | 65 Inferred from high throughput direct assay | biological_process | 68 experimental evidence used in manual assertion | PSI-MOD | 75 Chromatography evidence | fission_yeast_phenotype | 82 Plasmid maintenance assay evidence | fission_yeast_phenotype | 82 Non-traceable Author Statement | cellular_component | 84 Inferred from Sequence Model | biological_process | 101 Traceable Author Statement | cellular_component | 103 Non-traceable Author Statement | molecular_function | 105 Western blot evidence | PomGeneExProt | 115 Northern assay evidence | fission_yeast_phenotype | 117 Inferred from Genetic Interaction | molecular_function | 122 Northern assay evidence | PomGeneExRNA | 125 reporter gene assay evidence | PomGeneExProt | 129 Traceable Author Statement | molecular_function | 147 western blot evidence used in manual assertion | fission_yeast_phenotype | 147 tryptic phosphopeptide mapping assay evidence used in automatic assertion | fission_yeast_phenotype | 149 quantitative PCR | PomGeneExRNA | 153 sequence similarity evidence used in manual assertion | sequence | 155 Traceable Author Statement | biological_process | 161 Inferred by Curator | molecular_function | 190 experimental evidence | PomGeneExRNA | 198 high throughput nucleotide sequencing assay evidence | fission_yeast_phenotype | 206 Inferred from Sequence or Structural Similarity | cellular_component | 225 ECO:0006068 | fission_yeast_phenotype | 229 Electrophoretic mobility shift assay data | fission_yeast_phenotype | 256 Non-traceable Author Statement | biological_process | 259 sequence similarity evidence used in manual assertion | PSI-MOD | 264 Inferred from Sequence or Structural Similarity | molecular_function | 273 Inferred from Electronic Annotation | cellular_component | 279 Inferred from Physical Interaction | cellular_component | 294 differential hybridization evidence | PSI-MOD | 326 Inferred from Sequence or Structural Similarity | biological_process | 343 Inferred from Electronic Annotation | biological_process | 364 match to sequence model evidence used in manual assertion | sequence | 424 western blot evidence used in manual assertion | PomGeneExProt | 436 experimental phenotypic evidence | fission_yeast_phenotype | 493 Inferred from Genetic Interaction | biological_process | 534 Inferred by Curator | cellular_component | 567 Inferred from Experiment | cellular_component | 611 mass spectrometry evidence | PomGeneExProt | 614 Inferred from Direct Assay | biological_process | 649 microscopy evidence used in manual assertion | fission_yeast_phenotype | 659 Inferred from Sequence Orthology | molecular_function | 669 ribosome profiling evidence | PomGeneExRD | 731 Inferred from Experiment | biological_process | 782 Inferred from Sequence Orthology | cellular_component | 788 northern assay evidence used in manual assertion | PomGeneExRNA | 796 high throughput evidence used in manual assertion | PSI-MOD | 866 Inferred from Sequence Model | molecular_function | 894 Inferred by Curator | biological_process | 903 match to sequence model evidence | sequence | 941 Inferred from Mutant Phenotype | molecular_function | 1071 match to sequence model evidence used in manual assertion | PSI-MOD | 1121 Inferred from Experiment | molecular_function | 1156 Substance quantification | fission_yeast_phenotype | 1246 Inferred from Sequence Orthology | biological_process | 1255 Co-immunoprecipitation experiment | fission_yeast_phenotype | 1272 quantitative PCR | fission_yeast_phenotype | 1343 Inferred from Electronic Annotation | molecular_function | 1504 Inferred from high throughput mutant phenotype | molecular_function | 1535 competitive growth assay evidence | fission_yeast_phenotype | 1667 Inferred from Biological aspect of Ancestor | cellular_component | 1816 high throughput evidence used in manual assertion | fission_yeast_phenotype | 1964 Inferred from Direct Assay | molecular_function | 2151 cell viability assay evidence | fission_yeast_phenotype | 2163 Flow cytometry data | fission_yeast_phenotype | 2204 Inferred from Physical Interaction | molecular_function | 2327 Inferred from Biological aspect of Ancestor | molecular_function | 2351 Inferred from Biological aspect of Ancestor | biological_process | 2375 Inferred from Direct Assay | PSI-MOD | 2489 Enzyme assay data | fission_yeast_phenotype | 2524 gel electrophoresis evidence | fission_yeast_phenotype | 2654 Chromatin immunoprecipitation experiment | fission_yeast_phenotype | 2686 Other | fission_yeast_phenotype | 2701 high throughput evidence used in manual assertion | PomGeneExProt | 2987 experimental evidence | PSI-MOD | 3044 expression microarray evidence | PomGeneExRNA | 3614 reporter gene assay evidence | fission_yeast_phenotype | 3622 Inferred from Mutant Phenotype | biological_process | 3731 RNA-sequencing evidence | PomGeneExRNA | 3982 Inferred from high throughput direct assay | molecular_function | 4510 transcript expression level evidence | fission_yeast_phenotype | 5176 Western blot assay | fission_yeast_phenotype | 5180 Inferred from Direct Assay | cellular_component | 6209 Inferred from high throughput direct assay | cellular_component | 6646 mass spectrometry evidence | PSI-MOD | 7109 mass spectrometry evidence | gene_ex | 13682 experimental evidence | gene_ex | 19958 tryptic phosphopeptide mapping assay evidence used in automatic assertion | PSI-MOD | 35537 microscopy evidence | fission_yeast_phenotype | 40313 cell growth assay evidence | fission_yeast_phenotype | 117305 (146 rows) annotation counts by evidence code and cv type, sorted by cv evidence code: ev_code | cv_name | count ----------------------------------------------------------------------------------+--------------------------+-------- Chromatin immunoprecipitation experiment | fission_yeast_phenotype | 2686 Chromatography evidence | fission_yeast_phenotype | 82 Co-immunoprecipitation experiment | fission_yeast_phenotype | 1272 ECO:0000015 | sequence | 1 ECO:0006068 | fission_yeast_phenotype | 229 Electrophoretic mobility shift assay data | fission_yeast_phenotype | 256 Enzyme assay data | fission_yeast_phenotype | 2524 Epitope-tagged protein immunolocalization experiment data | fission_yeast_phenotype | 61 Flow cytometry data | fission_yeast_phenotype | 2204 Immunolocalization experiment data | fission_yeast_phenotype | 35 Inferred by Curator | biological_process | 903 Inferred by Curator | cellular_component | 567 Inferred by Curator | molecular_function | 190 Inferred from Biological aspect of Ancestor | biological_process | 2375 Inferred from Biological aspect of Ancestor | cellular_component | 1816 Inferred from Biological aspect of Ancestor | molecular_function | 2351 Inferred from Direct Assay | PSI-MOD | 2489 Inferred from Direct Assay | biological_process | 649 Inferred from Direct Assay | cellular_component | 6209 Inferred from Direct Assay | misc | 1 Inferred from Direct Assay | molecular_function | 2151 Inferred from Direct Assay | subunit_composition | 4 Inferred from Electronic Annotation | biological_process | 364 Inferred from Electronic Annotation | cellular_component | 279 Inferred from Electronic Annotation | molecular_function | 1504 Inferred from Experiment | biological_process | 782 Inferred from Experiment | cellular_component | 611 Inferred from Experiment | molecular_function | 1156 Inferred from Experiment | sequence | 10 Inferred from Expression Pattern | biological_process | 8 Inferred from Genetic Interaction | biological_process | 534 Inferred from Genetic Interaction | cellular_component | 45 Inferred from Genetic Interaction | molecular_function | 122 Inferred from Key Residues | molecular_function | 1 Inferred from Mutant Phenotype | biological_process | 3731 Inferred from Mutant Phenotype | cellular_component | 59 Inferred from Mutant Phenotype | misc | 4 Inferred from Mutant Phenotype | molecular_function | 1071 Inferred from Physical Interaction | biological_process | 57 Inferred from Physical Interaction | cellular_component | 294 Inferred from Physical Interaction | misc | 2 Inferred from Physical Interaction | molecular_function | 2327 Inferred from Sequence Model | PSI-MOD | 1 Inferred from Sequence Model | biological_process | 101 Inferred from Sequence Model | cellular_component | 56 Inferred from Sequence Model | molecular_function | 894 Inferred from Sequence Orthology | biological_process | 1255 Inferred from Sequence Orthology | cellular_component | 788 Inferred from Sequence Orthology | molecular_function | 669 Inferred from Sequence or Structural Similarity | PSI-MOD | 10 Inferred from Sequence or Structural Similarity | biological_process | 343 Inferred from Sequence or Structural Similarity | cellular_component | 225 Inferred from Sequence or Structural Similarity | genome_org | 11 Inferred from Sequence or Structural Similarity | m_f_g | 41 Inferred from Sequence or Structural Similarity | misc | 1 Inferred from Sequence or Structural Similarity | molecular_function | 273 Inferred from Sequence or Structural Similarity | pombase_family_or_domain | 6 Inferred from Sequence or Structural Similarity | subunit_composition | 1 Inferred from Sequence or Structural Similarity | warning | 65 Inferred from high throughput direct assay | biological_process | 68 Inferred from high throughput direct assay | cellular_component | 6646 Inferred from high throughput direct assay | molecular_function | 4510 Inferred from high throughput mutant phenotype | molecular_function | 1535 Non-traceable Author Statement | biological_process | 259 Non-traceable Author Statement | cellular_component | 84 Non-traceable Author Statement | complementation | 1 Non-traceable Author Statement | molecular_function | 105 Northern assay evidence | PomGeneExRNA | 125 Northern assay evidence | fission_yeast_phenotype | 117 Other | fission_yeast_phenotype | 2701 Other direct assay | fission_yeast_phenotype | 8 Particle size and count assay | fission_yeast_phenotype | 44 Plasmid maintenance assay evidence | fission_yeast_phenotype | 82 RNA detection assay evidence | gene_ex | 2 RNA protection assay evidence | PomGeneExRNA | 58 RNA-sequencing evidence | PomGeneExRNA | 3982 Substance quantification | fission_yeast_phenotype | 1246 Traceable Author Statement | biological_process | 161 Traceable Author Statement | cellular_component | 103 Traceable Author Statement | molecular_function | 147 Traceable Author Statement | pombase_family_or_domain | 5 Western blot assay | fission_yeast_phenotype | 5180 Western blot evidence | PomGeneExProt | 115 author statement supported by traceable reference used in manual assertion | sequence | 1 author statement without traceable support used in manual assertion | PSI-MOD | 1 cell growth assay evidence | fission_yeast_phenotype | 117305 cell viability assay evidence | fission_yeast_phenotype | 2163 combinatorial computational and experimental evidence used in manual assertion | PSI-MOD | 1 competitive growth assay evidence | fission_yeast_phenotype | 1667 curator inference used in manual assertion | PSI-MOD | 21 curator inference used in manual assertion | sequence | 6 differential hybridization evidence | PSI-MOD | 326 differential hybridization evidence | PomGeneExRNA | 1 direct assay evidence used in manual assertion | sequence | 7 experimental evidence | PSI-MOD | 3044 experimental evidence | PomGeneExProt | 1 experimental evidence | PomGeneExRNA | 198 experimental evidence | gene_ex | 19958 experimental evidence used in manual assertion | PSI-MOD | 75 experimental evidence used in manual assertion | sequence | 4 experimental phenotypic evidence | fission_yeast_phenotype | 493 expression microarray evidence | PomGeneExRNA | 3614 fusion protein localization evidence | PomGeneExProt | 11 gel electrophoresis evidence | fission_yeast_phenotype | 2654 high throughput evidence used in manual assertion | PSI-MOD | 866 high throughput evidence used in manual assertion | PomGeneExProt | 2987 high throughput evidence used in manual assertion | fission_yeast_phenotype | 1964 high throughput nucleotide sequencing assay evidence | fission_yeast_phenotype | 206 immunofluorescence evidence | PomGeneExProt | 6 in situ hybridization assay evidence | gene_ex | 14 in situ hybridization evidence used in manual assertion | PomGeneExRNA | 5 mass spectrometry evidence | PSI-MOD | 7109 mass spectrometry evidence | PomGeneExProt | 614 mass spectrometry evidence | gene_ex | 13682 match to sequence model evidence | sequence | 941 match to sequence model evidence used in manual assertion | PSI-MOD | 1121 match to sequence model evidence used in manual assertion | sequence | 424 microscopy evidence | PomGeneExProt | 19 microscopy evidence | fission_yeast_phenotype | 40313 microscopy evidence | gene_ex | 9 microscopy evidence used in manual assertion | fission_yeast_phenotype | 659 mutant phenotype evidence used in manual assertion | sequence | 10 neural network method evidence used in manual assertion | PSI-MOD | 13 northern assay evidence used in manual assertion | PomGeneExProt | 5 northern assay evidence used in manual assertion | PomGeneExRNA | 796 protein expression level evidence based on western blot used in manual assertion | gene_ex | 2 quantitative PCR | PomGeneExRNA | 153 quantitative PCR | fission_yeast_phenotype | 1343 quantitative polymerase chain reaction evidence used in manual assertion | PomGeneExRNA | 8 reporter gene assay evidence | PomGeneExProt | 129 reporter gene assay evidence | PomGeneExRNA | 19 reporter gene assay evidence | fission_yeast_phenotype | 3622 reverse transcription polymerase chain reaction transcription evidence | PomGeneExRNA | 60 ribosome profiling evidence | PomGeneExRD | 731 sequence similarity evidence | sequence | 25 sequence similarity evidence used in manual assertion | PSI-MOD | 264 sequence similarity evidence used in manual assertion | sequence | 155 sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | PomGeneExProt | 2 sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | fission_yeast_phenotype | 22 transcript expression level evidence | PomGeneExRNA | 16 transcript expression level evidence | fission_yeast_phenotype | 5176 tryptic phosphopeptide mapping assay evidence used in automatic assertion | PSI-MOD | 35537 tryptic phosphopeptide mapping assay evidence used in automatic assertion | fission_yeast_phenotype | 149 western blot evidence used in manual assertion | PomGeneExProt | 436 western blot evidence used in manual assertion | PomGeneExRNA | 14 western blot evidence used in manual assertion | fission_yeast_phenotype | 147 (146 rows) total: count -------- 454159 (1 row) counts of annotation from Canto, by type: count | cv_name -------+------------------------------------ 10 | sequence 113 | PomGeneExProt 494 | PomGeneExRNA 2385 | PSI-MOD 4825 | biological_process 5321 | molecular_function 6216 | cellular_component 44030 | PomBase annotation extension terms 79858 | fission_yeast_phenotype (9 rows) total ------- 99222 (1 row)