counts of all annotation by type: count | cv_name --------+-------------------------------------- 6 | external_link 22 | ex_tools 23 | pathway 26 | cat_act 76 | m_f_g 162 | genome_org 196 | subunit_composition 407 | EC numbers 445 | misc 465 | complementation 808 | PomGeneExRD 1009 | name_description 1663 | sequence 1705 | warning 1864 | pombase_family_or_domain 3364 | mondo 4329 | PomGeneExProt 5146 | PomBase gene characterisation status 9449 | PomGeneExRNA 11728 | biological_process 17880 | cellular_component 19016 | molecular_function 25226 | species_dist 33667 | gene_ex 68567 | PomBase gene products 74507 | PSI-MOD 196739 | fission_yeast_phenotype (27 rows) annotation counts by evidence code and cv type, sorted by cv name: ev_code | cv_name | count ----------------------------------------------------------------------------------+--------------------------+-------- Inferred from Direct Assay | PSI-MOD | 3299 Inferred from Mutant Phenotype | PSI-MOD | 1 Inferred from Sequence Model | PSI-MOD | 2 Inferred from Sequence or Structural Similarity | PSI-MOD | 100 Traceable Author Statement | PSI-MOD | 1 Unknown | PSI-MOD | 43 author statement without traceable support used in manual assertion | PSI-MOD | 1 combinatorial computational and experimental evidence used in manual assertion | PSI-MOD | 1 curator inference used in manual assertion | PSI-MOD | 21 differential hybridization evidence | PSI-MOD | 1287 experimental evidence | PSI-MOD | 8138 experimental evidence used in manual assertion | PSI-MOD | 75 high throughput evidence used in manual assertion | PSI-MOD | 6709 mass spectrometry evidence | PSI-MOD | 8352 match to sequence model evidence used in manual assertion | PSI-MOD | 1119 neural network method evidence used in manual assertion | PSI-MOD | 47 sequence similarity evidence used in manual assertion | PSI-MOD | 262 tryptic phosphopeptide mapping assay evidence used in automatic assertion | PSI-MOD | 45049 Western blot evidence | PomGeneExProt | 115 experimental evidence | PomGeneExProt | 1 fusion protein localization evidence | PomGeneExProt | 11 high throughput evidence used in manual assertion | PomGeneExProt | 2987 immunofluorescence evidence | PomGeneExProt | 6 mass spectrometry evidence | PomGeneExProt | 614 microscopy evidence | PomGeneExProt | 19 northern assay evidence used in manual assertion | PomGeneExProt | 5 reporter gene assay evidence | PomGeneExProt | 129 sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | PomGeneExProt | 2 western blot evidence used in manual assertion | PomGeneExProt | 436 ribosome profiling evidence | PomGeneExRD | 808 Northern assay evidence | PomGeneExRNA | 125 RNA protection assay evidence | PomGeneExRNA | 58 RNA-sequencing evidence | PomGeneExRNA | 4364 differential hybridization evidence | PomGeneExRNA | 1 experimental evidence | PomGeneExRNA | 198 expression microarray evidence | PomGeneExRNA | 3614 in situ hybridization evidence used in manual assertion | PomGeneExRNA | 5 northern assay evidence used in manual assertion | PomGeneExRNA | 796 quantitative PCR | PomGeneExRNA | 153 quantitative polymerase chain reaction evidence used in manual assertion | PomGeneExRNA | 8 reporter gene assay evidence | PomGeneExRNA | 19 reverse transcription polymerase chain reaction transcription evidence | PomGeneExRNA | 60 transcript expression level evidence | PomGeneExRNA | 16 western blot evidence used in manual assertion | PomGeneExRNA | 14 Inferred by Curator | biological_process | 901 Inferred from Biological aspect of Ancestor | biological_process | 2334 Inferred from Direct Assay | biological_process | 646 Inferred from Electronic Annotation | biological_process | 411 Inferred from Experiment | biological_process | 766 Inferred from Expression Pattern | biological_process | 8 Inferred from Genetic Interaction | biological_process | 530 Inferred from Mutant Phenotype | biological_process | 3722 Inferred from Physical Interaction | biological_process | 57 Inferred from Sequence Model | biological_process | 98 Inferred from Sequence Orthology | biological_process | 1222 Inferred from Sequence or Structural Similarity | biological_process | 342 Inferred from high throughput direct assay | biological_process | 68 Non-traceable Author Statement | biological_process | 254 Traceable Author Statement | biological_process | 160 Inferred by Curator | cellular_component | 560 Inferred from Biological aspect of Ancestor | cellular_component | 1811 Inferred from Direct Assay | cellular_component | 6211 Inferred from Electronic Annotation | cellular_component | 300 Inferred from Experiment | cellular_component | 612 Inferred from Genetic Interaction | cellular_component | 44 Inferred from Mutant Phenotype | cellular_component | 60 Inferred from Physical Interaction | cellular_component | 295 Inferred from Sequence Model | cellular_component | 56 Inferred from Sequence Orthology | cellular_component | 785 Inferred from Sequence or Structural Similarity | cellular_component | 223 Inferred from high throughput direct assay | cellular_component | 6639 Non-traceable Author Statement | cellular_component | 94 Traceable Author Statement | cellular_component | 103 Non-traceable Author Statement | complementation | 1 Chromatin immunoprecipitation experiment | fission_yeast_phenotype | 2686 Chromatography evidence | fission_yeast_phenotype | 82 Co-immunoprecipitation experiment | fission_yeast_phenotype | 1276 ECO:0006068 | fission_yeast_phenotype | 229 Electrophoretic mobility shift assay data | fission_yeast_phenotype | 256 Enzyme assay data | fission_yeast_phenotype | 2524 Epitope-tagged protein immunolocalization experiment data | fission_yeast_phenotype | 61 Flow cytometry data | fission_yeast_phenotype | 2204 Immunolocalization experiment data | fission_yeast_phenotype | 35 Northern assay evidence | fission_yeast_phenotype | 117 Other | fission_yeast_phenotype | 2704 Other direct assay | fission_yeast_phenotype | 8 Particle size and count assay | fission_yeast_phenotype | 44 Plasmid maintenance assay evidence | fission_yeast_phenotype | 82 Substance quantification evidence | fission_yeast_phenotype | 1246 Western blot assay | fission_yeast_phenotype | 5197 cell growth assay evidence | fission_yeast_phenotype | 117377 cell viability assay evidence | fission_yeast_phenotype | 2163 competitive growth assay evidence | fission_yeast_phenotype | 1667 experimental phenotypic evidence | fission_yeast_phenotype | 493 gel electrophoresis evidence | fission_yeast_phenotype | 2656 high throughput evidence used in manual assertion | fission_yeast_phenotype | 1964 high throughput nucleotide sequencing assay evidence | fission_yeast_phenotype | 206 microscopy evidence | fission_yeast_phenotype | 40324 microscopy evidence used in manual assertion | fission_yeast_phenotype | 659 quantitative PCR | fission_yeast_phenotype | 1363 reporter gene assay evidence | fission_yeast_phenotype | 3622 sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | fission_yeast_phenotype | 22 transcript expression level evidence | fission_yeast_phenotype | 5176 tryptic phosphopeptide mapping assay evidence used in automatic assertion | fission_yeast_phenotype | 149 western blot evidence used in manual assertion | fission_yeast_phenotype | 147 RNA detection assay evidence | gene_ex | 2 experimental evidence | gene_ex | 19958 in situ hybridization assay evidence | gene_ex | 14 mass spectrometry evidence | gene_ex | 13682 microscopy evidence | gene_ex | 9 protein expression level evidence based on western blot used in manual assertion | gene_ex | 2 Inferred from Sequence or Structural Similarity | genome_org | 11 Inferred from Sequence or Structural Similarity | m_f_g | 41 Inferred from Direct Assay | misc | 1 Inferred from Mutant Phenotype | misc | 4 Inferred from Physical Interaction | misc | 2 Inferred from Sequence or Structural Similarity | misc | 1 Inferred by Curator | molecular_function | 190 Inferred from Biological aspect of Ancestor | molecular_function | 2332 Inferred from Direct Assay | molecular_function | 2152 Inferred from Electronic Annotation | molecular_function | 1520 Inferred from Experiment | molecular_function | 1158 Inferred from Genetic Interaction | molecular_function | 122 Inferred from Key Residues | molecular_function | 1 Inferred from Mutant Phenotype | molecular_function | 1071 Inferred from Physical Interaction | molecular_function | 2327 Inferred from Sequence Model | molecular_function | 892 Inferred from Sequence Orthology | molecular_function | 678 Inferred from Sequence or Structural Similarity | molecular_function | 276 Inferred from high throughput direct assay | molecular_function | 4510 Inferred from high throughput mutant phenotype | molecular_function | 1535 Non-traceable Author Statement | molecular_function | 103 Traceable Author Statement | molecular_function | 148 Inferred from Sequence or Structural Similarity | pombase_family_or_domain | 6 Traceable Author Statement | pombase_family_or_domain | 5 ECO:0000015 | sequence | 1 Inferred from Experiment | sequence | 10 author statement supported by traceable reference used in manual assertion | sequence | 1 curator inference used in manual assertion | sequence | 6 direct assay evidence used in manual assertion | sequence | 7 experimental evidence used in manual assertion | sequence | 4 match to sequence model evidence | sequence | 941 match to sequence model evidence used in manual assertion | sequence | 425 mutant phenotype evidence used in manual assertion | sequence | 10 sequence similarity evidence | sequence | 25 sequence similarity evidence used in manual assertion | sequence | 155 Inferred from Direct Assay | subunit_composition | 4 Inferred from Sequence or Structural Similarity | subunit_composition | 1 Inferred from Sequence or Structural Similarity | warning | 65 (149 rows) annotation counts by evidence code and cv type, sorted by count: ev_code | cv_name | count ----------------------------------------------------------------------------------+--------------------------+-------- Inferred from Sequence or Structural Similarity | subunit_composition | 1 Inferred from Sequence or Structural Similarity | misc | 1 Inferred from Key Residues | molecular_function | 1 author statement supported by traceable reference used in manual assertion | sequence | 1 experimental evidence | PomGeneExProt | 1 Inferred from Direct Assay | misc | 1 author statement without traceable support used in manual assertion | PSI-MOD | 1 Non-traceable Author Statement | complementation | 1 ECO:0000015 | sequence | 1 Traceable Author Statement | PSI-MOD | 1 Inferred from Mutant Phenotype | PSI-MOD | 1 combinatorial computational and experimental evidence used in manual assertion | PSI-MOD | 1 differential hybridization evidence | PomGeneExRNA | 1 Inferred from Sequence Model | PSI-MOD | 2 Inferred from Physical Interaction | misc | 2 protein expression level evidence based on western blot used in manual assertion | gene_ex | 2 sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | PomGeneExProt | 2 RNA detection assay evidence | gene_ex | 2 Inferred from Direct Assay | subunit_composition | 4 Inferred from Mutant Phenotype | misc | 4 experimental evidence used in manual assertion | sequence | 4 Traceable Author Statement | pombase_family_or_domain | 5 northern assay evidence used in manual assertion | PomGeneExProt | 5 in situ hybridization evidence used in manual assertion | PomGeneExRNA | 5 immunofluorescence evidence | PomGeneExProt | 6 curator inference used in manual assertion | sequence | 6 Inferred from Sequence or Structural Similarity | pombase_family_or_domain | 6 direct assay evidence used in manual assertion | sequence | 7 quantitative polymerase chain reaction evidence used in manual assertion | PomGeneExRNA | 8 Inferred from Expression Pattern | biological_process | 8 Other direct assay | fission_yeast_phenotype | 8 microscopy evidence | gene_ex | 9 mutant phenotype evidence used in manual assertion | sequence | 10 Inferred from Experiment | sequence | 10 Inferred from Sequence or Structural Similarity | genome_org | 11 fusion protein localization evidence | PomGeneExProt | 11 in situ hybridization assay evidence | gene_ex | 14 western blot evidence used in manual assertion | PomGeneExRNA | 14 transcript expression level evidence | PomGeneExRNA | 16 microscopy evidence | PomGeneExProt | 19 reporter gene assay evidence | PomGeneExRNA | 19 curator inference used in manual assertion | PSI-MOD | 21 sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | fission_yeast_phenotype | 22 sequence similarity evidence | sequence | 25 Immunolocalization experiment data | fission_yeast_phenotype | 35 Inferred from Sequence or Structural Similarity | m_f_g | 41 Unknown | PSI-MOD | 43 Inferred from Genetic Interaction | cellular_component | 44 Particle size and count assay | fission_yeast_phenotype | 44 neural network method evidence used in manual assertion | PSI-MOD | 47 Inferred from Sequence Model | cellular_component | 56 Inferred from Physical Interaction | biological_process | 57 RNA protection assay evidence | PomGeneExRNA | 58 reverse transcription polymerase chain reaction transcription evidence | PomGeneExRNA | 60 Inferred from Mutant Phenotype | cellular_component | 60 Epitope-tagged protein immunolocalization experiment data | fission_yeast_phenotype | 61 Inferred from Sequence or Structural Similarity | warning | 65 Inferred from high throughput direct assay | biological_process | 68 experimental evidence used in manual assertion | PSI-MOD | 75 Chromatography evidence | fission_yeast_phenotype | 82 Plasmid maintenance assay evidence | fission_yeast_phenotype | 82 Non-traceable Author Statement | cellular_component | 94 Inferred from Sequence Model | biological_process | 98 Inferred from Sequence or Structural Similarity | PSI-MOD | 100 Non-traceable Author Statement | molecular_function | 103 Traceable Author Statement | cellular_component | 103 Western blot evidence | PomGeneExProt | 115 Northern assay evidence | fission_yeast_phenotype | 117 Inferred from Genetic Interaction | molecular_function | 122 Northern assay evidence | PomGeneExRNA | 125 reporter gene assay evidence | PomGeneExProt | 129 western blot evidence used in manual assertion | fission_yeast_phenotype | 147 Traceable Author Statement | molecular_function | 148 tryptic phosphopeptide mapping assay evidence used in automatic assertion | fission_yeast_phenotype | 149 quantitative PCR | PomGeneExRNA | 153 sequence similarity evidence used in manual assertion | sequence | 155 Traceable Author Statement | biological_process | 160 Inferred by Curator | molecular_function | 190 experimental evidence | PomGeneExRNA | 198 high throughput nucleotide sequencing assay evidence | fission_yeast_phenotype | 206 Inferred from Sequence or Structural Similarity | cellular_component | 223 ECO:0006068 | fission_yeast_phenotype | 229 Non-traceable Author Statement | biological_process | 254 Electrophoretic mobility shift assay data | fission_yeast_phenotype | 256 sequence similarity evidence used in manual assertion | PSI-MOD | 262 Inferred from Sequence or Structural Similarity | molecular_function | 276 Inferred from Physical Interaction | cellular_component | 295 Inferred from Electronic Annotation | cellular_component | 300 Inferred from Sequence or Structural Similarity | biological_process | 342 Inferred from Electronic Annotation | biological_process | 411 match to sequence model evidence used in manual assertion | sequence | 425 western blot evidence used in manual assertion | PomGeneExProt | 436 experimental phenotypic evidence | fission_yeast_phenotype | 493 Inferred from Genetic Interaction | biological_process | 530 Inferred by Curator | cellular_component | 560 Inferred from Experiment | cellular_component | 612 mass spectrometry evidence | PomGeneExProt | 614 Inferred from Direct Assay | biological_process | 646 microscopy evidence used in manual assertion | fission_yeast_phenotype | 659 Inferred from Sequence Orthology | molecular_function | 678 Inferred from Experiment | biological_process | 766 Inferred from Sequence Orthology | cellular_component | 785 northern assay evidence used in manual assertion | PomGeneExRNA | 796 ribosome profiling evidence | PomGeneExRD | 808 Inferred from Sequence Model | molecular_function | 892 Inferred by Curator | biological_process | 901 match to sequence model evidence | sequence | 941 Inferred from Mutant Phenotype | molecular_function | 1071 match to sequence model evidence used in manual assertion | PSI-MOD | 1119 Inferred from Experiment | molecular_function | 1158 Inferred from Sequence Orthology | biological_process | 1222 Substance quantification evidence | fission_yeast_phenotype | 1246 Co-immunoprecipitation experiment | fission_yeast_phenotype | 1276 differential hybridization evidence | PSI-MOD | 1287 quantitative PCR | fission_yeast_phenotype | 1363 Inferred from Electronic Annotation | molecular_function | 1520 Inferred from high throughput mutant phenotype | molecular_function | 1535 competitive growth assay evidence | fission_yeast_phenotype | 1667 Inferred from Biological aspect of Ancestor | cellular_component | 1811 high throughput evidence used in manual assertion | fission_yeast_phenotype | 1964 Inferred from Direct Assay | molecular_function | 2152 cell viability assay evidence | fission_yeast_phenotype | 2163 Flow cytometry data | fission_yeast_phenotype | 2204 Inferred from Physical Interaction | molecular_function | 2327 Inferred from Biological aspect of Ancestor | molecular_function | 2332 Inferred from Biological aspect of Ancestor | biological_process | 2334 Enzyme assay data | fission_yeast_phenotype | 2524 gel electrophoresis evidence | fission_yeast_phenotype | 2656 Chromatin immunoprecipitation experiment | fission_yeast_phenotype | 2686 Other | fission_yeast_phenotype | 2704 high throughput evidence used in manual assertion | PomGeneExProt | 2987 Inferred from Direct Assay | PSI-MOD | 3299 expression microarray evidence | PomGeneExRNA | 3614 reporter gene assay evidence | fission_yeast_phenotype | 3622 Inferred from Mutant Phenotype | biological_process | 3722 RNA-sequencing evidence | PomGeneExRNA | 4364 Inferred from high throughput direct assay | molecular_function | 4510 transcript expression level evidence | fission_yeast_phenotype | 5176 Western blot assay | fission_yeast_phenotype | 5197 Inferred from Direct Assay | cellular_component | 6211 Inferred from high throughput direct assay | cellular_component | 6639 high throughput evidence used in manual assertion | PSI-MOD | 6709 experimental evidence | PSI-MOD | 8138 mass spectrometry evidence | PSI-MOD | 8352 mass spectrometry evidence | gene_ex | 13682 experimental evidence | gene_ex | 19958 microscopy evidence | fission_yeast_phenotype | 40324 tryptic phosphopeptide mapping assay evidence used in automatic assertion | PSI-MOD | 45049 cell growth assay evidence | fission_yeast_phenotype | 117377 (149 rows) annotation counts by evidence code and cv type, sorted by cv evidence code: ev_code | cv_name | count ----------------------------------------------------------------------------------+--------------------------+-------- Chromatin immunoprecipitation experiment | fission_yeast_phenotype | 2686 Chromatography evidence | fission_yeast_phenotype | 82 Co-immunoprecipitation experiment | fission_yeast_phenotype | 1276 ECO:0000015 | sequence | 1 ECO:0006068 | fission_yeast_phenotype | 229 Electrophoretic mobility shift assay data | fission_yeast_phenotype | 256 Enzyme assay data | fission_yeast_phenotype | 2524 Epitope-tagged protein immunolocalization experiment data | fission_yeast_phenotype | 61 Flow cytometry data | fission_yeast_phenotype | 2204 Immunolocalization experiment data | fission_yeast_phenotype | 35 Inferred by Curator | biological_process | 901 Inferred by Curator | cellular_component | 560 Inferred by Curator | molecular_function | 190 Inferred from Biological aspect of Ancestor | biological_process | 2334 Inferred from Biological aspect of Ancestor | cellular_component | 1811 Inferred from Biological aspect of Ancestor | molecular_function | 2332 Inferred from Direct Assay | PSI-MOD | 3299 Inferred from Direct Assay | biological_process | 646 Inferred from Direct Assay | cellular_component | 6211 Inferred from Direct Assay | misc | 1 Inferred from Direct Assay | molecular_function | 2152 Inferred from Direct Assay | subunit_composition | 4 Inferred from Electronic Annotation | biological_process | 411 Inferred from Electronic Annotation | cellular_component | 300 Inferred from Electronic Annotation | molecular_function | 1520 Inferred from Experiment | biological_process | 766 Inferred from Experiment | cellular_component | 612 Inferred from Experiment | molecular_function | 1158 Inferred from Experiment | sequence | 10 Inferred from Expression Pattern | biological_process | 8 Inferred from Genetic Interaction | biological_process | 530 Inferred from Genetic Interaction | cellular_component | 44 Inferred from Genetic Interaction | molecular_function | 122 Inferred from Key Residues | molecular_function | 1 Inferred from Mutant Phenotype | PSI-MOD | 1 Inferred from Mutant Phenotype | biological_process | 3722 Inferred from Mutant Phenotype | cellular_component | 60 Inferred from Mutant Phenotype | misc | 4 Inferred from Mutant Phenotype | molecular_function | 1071 Inferred from Physical Interaction | biological_process | 57 Inferred from Physical Interaction | cellular_component | 295 Inferred from Physical Interaction | misc | 2 Inferred from Physical Interaction | molecular_function | 2327 Inferred from Sequence Model | PSI-MOD | 2 Inferred from Sequence Model | biological_process | 98 Inferred from Sequence Model | cellular_component | 56 Inferred from Sequence Model | molecular_function | 892 Inferred from Sequence Orthology | biological_process | 1222 Inferred from Sequence Orthology | cellular_component | 785 Inferred from Sequence Orthology | molecular_function | 678 Inferred from Sequence or Structural Similarity | PSI-MOD | 100 Inferred from Sequence or Structural Similarity | biological_process | 342 Inferred from Sequence or Structural Similarity | cellular_component | 223 Inferred from Sequence or Structural Similarity | genome_org | 11 Inferred from Sequence or Structural Similarity | m_f_g | 41 Inferred from Sequence or Structural Similarity | misc | 1 Inferred from Sequence or Structural Similarity | molecular_function | 276 Inferred from Sequence or Structural Similarity | pombase_family_or_domain | 6 Inferred from Sequence or Structural Similarity | subunit_composition | 1 Inferred from Sequence or Structural Similarity | warning | 65 Inferred from high throughput direct assay | biological_process | 68 Inferred from high throughput direct assay | cellular_component | 6639 Inferred from high throughput direct assay | molecular_function | 4510 Inferred from high throughput mutant phenotype | molecular_function | 1535 Non-traceable Author Statement | biological_process | 254 Non-traceable Author Statement | cellular_component | 94 Non-traceable Author Statement | complementation | 1 Non-traceable Author Statement | molecular_function | 103 Northern assay evidence | PomGeneExRNA | 125 Northern assay evidence | fission_yeast_phenotype | 117 Other | fission_yeast_phenotype | 2704 Other direct assay | fission_yeast_phenotype | 8 Particle size and count assay | fission_yeast_phenotype | 44 Plasmid maintenance assay evidence | fission_yeast_phenotype | 82 RNA detection assay evidence | gene_ex | 2 RNA protection assay evidence | PomGeneExRNA | 58 RNA-sequencing evidence | PomGeneExRNA | 4364 Substance quantification evidence | fission_yeast_phenotype | 1246 Traceable Author Statement | PSI-MOD | 1 Traceable Author Statement | biological_process | 160 Traceable Author Statement | cellular_component | 103 Traceable Author Statement | molecular_function | 148 Traceable Author Statement | pombase_family_or_domain | 5 Unknown | PSI-MOD | 43 Western blot assay | fission_yeast_phenotype | 5197 Western blot evidence | PomGeneExProt | 115 author statement supported by traceable reference used in manual assertion | sequence | 1 author statement without traceable support used in manual assertion | PSI-MOD | 1 cell growth assay evidence | fission_yeast_phenotype | 117377 cell viability assay evidence | fission_yeast_phenotype | 2163 combinatorial computational and experimental evidence used in manual assertion | PSI-MOD | 1 competitive growth assay evidence | fission_yeast_phenotype | 1667 curator inference used in manual assertion | PSI-MOD | 21 curator inference used in manual assertion | sequence | 6 differential hybridization evidence | PSI-MOD | 1287 differential hybridization evidence | PomGeneExRNA | 1 direct assay evidence used in manual assertion | sequence | 7 experimental evidence | PSI-MOD | 8138 experimental evidence | PomGeneExProt | 1 experimental evidence | PomGeneExRNA | 198 experimental evidence | gene_ex | 19958 experimental evidence used in manual assertion | PSI-MOD | 75 experimental evidence used in manual assertion | sequence | 4 experimental phenotypic evidence | fission_yeast_phenotype | 493 expression microarray evidence | PomGeneExRNA | 3614 fusion protein localization evidence | PomGeneExProt | 11 gel electrophoresis evidence | fission_yeast_phenotype | 2656 high throughput evidence used in manual assertion | PSI-MOD | 6709 high throughput evidence used in manual assertion | PomGeneExProt | 2987 high throughput evidence used in manual assertion | fission_yeast_phenotype | 1964 high throughput nucleotide sequencing assay evidence | fission_yeast_phenotype | 206 immunofluorescence evidence | PomGeneExProt | 6 in situ hybridization assay evidence | gene_ex | 14 in situ hybridization evidence used in manual assertion | PomGeneExRNA | 5 mass spectrometry evidence | PSI-MOD | 8352 mass spectrometry evidence | PomGeneExProt | 614 mass spectrometry evidence | gene_ex | 13682 match to sequence model evidence | sequence | 941 match to sequence model evidence used in manual assertion | PSI-MOD | 1119 match to sequence model evidence used in manual assertion | sequence | 425 microscopy evidence | PomGeneExProt | 19 microscopy evidence | fission_yeast_phenotype | 40324 microscopy evidence | gene_ex | 9 microscopy evidence used in manual assertion | fission_yeast_phenotype | 659 mutant phenotype evidence used in manual assertion | sequence | 10 neural network method evidence used in manual assertion | PSI-MOD | 47 northern assay evidence used in manual assertion | PomGeneExProt | 5 northern assay evidence used in manual assertion | PomGeneExRNA | 796 protein expression level evidence based on western blot used in manual assertion | gene_ex | 2 quantitative PCR | PomGeneExRNA | 153 quantitative PCR | fission_yeast_phenotype | 1363 quantitative polymerase chain reaction evidence used in manual assertion | PomGeneExRNA | 8 reporter gene assay evidence | PomGeneExProt | 129 reporter gene assay evidence | PomGeneExRNA | 19 reporter gene assay evidence | fission_yeast_phenotype | 3622 reverse transcription polymerase chain reaction transcription evidence | PomGeneExRNA | 60 ribosome profiling evidence | PomGeneExRD | 808 sequence similarity evidence | sequence | 25 sequence similarity evidence used in manual assertion | PSI-MOD | 262 sequence similarity evidence used in manual assertion | sequence | 155 sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | PomGeneExProt | 2 sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | fission_yeast_phenotype | 22 transcript expression level evidence | PomGeneExRNA | 16 transcript expression level evidence | fission_yeast_phenotype | 5176 tryptic phosphopeptide mapping assay evidence used in automatic assertion | PSI-MOD | 45049 tryptic phosphopeptide mapping assay evidence used in automatic assertion | fission_yeast_phenotype | 149 western blot evidence used in manual assertion | PomGeneExProt | 436 western blot evidence used in manual assertion | PomGeneExRNA | 14 western blot evidence used in manual assertion | fission_yeast_phenotype | 147 (149 rows) total: count -------- 478495 (1 row) counts of annotation from Canto, by type: count | cv_name -------+------------------------------------ 10 | sequence 113 | PomGeneExProt 494 | PomGeneExRNA 2386 | PSI-MOD 4813 | biological_process 5324 | molecular_function 6221 | cellular_component 44118 | PomBase annotation extension terms 79987 | fission_yeast_phenotype (9 rows) total ------- 99348 (1 row)