counts of all annotation by type: count | cv_name -------+-------------------------------------- 6 | external_link 22 | ex_tools 27 | cat_act 28 | pathway 90 | m_f_g 190 | subunit_composition 227 | genome_org 419 | misc 452 | complementation 737 | PomGeneExRD 826 | EC numbers 960 | sequence 965 | name_description 1286 | PomGeneExProt 1801 | warning 1866 | PomBase family or domain 4059 | kegg_pombe_pathway 4557 | mondo 5143 | PomBase gene characterisation status 8737 | PomGeneExRNA 11864 | biological_process 13469 | molecular_function 17668 | cellular_component 25143 | species_dist 33818 | gene_ex 49525 | PSI-MOD 61692 | PomBase gene products 99356 | fission_yeast_phenotype (28 rows) annotation counts by evidence code and cv type, sorted by cv name: ev_code | cv_name | count ----------------------------------------------------------------------------------+--------------------------+------- Inferred from Direct Assay | PSI-MOD | 3108 Inferred from Mutant Phenotype | PSI-MOD | 1 Inferred from Sequence Model | PSI-MOD | 2 Inferred from Sequence or Structural Similarity | PSI-MOD | 99 Traceable Author Statement | PSI-MOD | 1 experimental evidence | PSI-MOD | 8141 mass spectrometry evidence | PSI-MOD | 3202 tryptic phosphopeptide mapping assay evidence used in automatic assertion | PSI-MOD | 34916 Inferred from Sequence or Structural Similarity | PomBase family or domain | 5 Traceable Author Statement | PomBase family or domain | 5 Microscopy | PomGeneExProt | 5 Western blot evidence | PomGeneExProt | 62 experimental evidence | PomGeneExProt | 1 fusion protein localization evidence | PomGeneExProt | 11 immunofluorescence evidence | PomGeneExProt | 6 mass spectrometry evidence | PomGeneExProt | 614 northern assay evidence used in manual assertion | PomGeneExProt | 5 quantitative PCR | PomGeneExProt | 3 reporter gene assay evidence | PomGeneExProt | 134 sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | PomGeneExProt | 2 western blot evidence used in manual assertion | PomGeneExProt | 437 ribosome profiling evidence | PomGeneExRD | 737 Northern assay evidence | PomGeneExRNA | 109 RNA protection assay evidence | PomGeneExRNA | 58 RNA-sequencing evidence | PomGeneExRNA | 3823 experimental evidence | PomGeneExRNA | 198 expression microarray evidence | PomGeneExRNA | 3515 in situ hybridization evidence used in manual assertion | PomGeneExRNA | 3 northern assay evidence used in manual assertion | PomGeneExRNA | 796 quantitative PCR | PomGeneExRNA | 110 quantitative polymerase chain reaction evidence used in manual assertion | PomGeneExRNA | 8 reporter gene assay evidence | PomGeneExRNA | 12 reverse transcription polymerase chain reaction transcription evidence | PomGeneExRNA | 60 transcript expression level evidence | PomGeneExRNA | 16 western blot evidence used in manual assertion | PomGeneExRNA | 13 Inferred by Curator | biological_process | 1146 Inferred from Biological aspect of Ancestor | biological_process | 1342 Inferred from Direct Assay | biological_process | 723 Inferred from Electronic Annotation | biological_process | 528 Inferred from Experiment | biological_process | 350 Inferred from Expression Pattern | biological_process | 19 Inferred from Genetic Interaction | biological_process | 593 Inferred from Mutant Phenotype | biological_process | 3803 Inferred from Physical Interaction | biological_process | 86 Inferred from Sequence Model | biological_process | 178 Inferred from Sequence Orthology | biological_process | 2032 Inferred from Sequence or Structural Similarity | biological_process | 549 Non-traceable Author Statement | biological_process | 372 Traceable Author Statement | biological_process | 143 Inferred by Curator | cellular_component | 536 Inferred from Biological aspect of Ancestor | cellular_component | 979 Inferred from Direct Assay | cellular_component | 5461 Inferred from Electronic Annotation | cellular_component | 905 Inferred from Experiment | cellular_component | 294 Inferred from Genetic Interaction | cellular_component | 46 Inferred from Mutant Phenotype | cellular_component | 56 Inferred from Physical Interaction | cellular_component | 282 Inferred from Sequence Model | cellular_component | 94 Inferred from Sequence Orthology | cellular_component | 1489 Inferred from Sequence or Structural Similarity | cellular_component | 392 Inferred from high throughput direct assay | cellular_component | 6854 Non-traceable Author Statement | cellular_component | 179 Traceable Author Statement | cellular_component | 101 Non-traceable Author Statement | complementation | 1 Chromatin immunoprecipitation experiment | fission_yeast_phenotype | 1895 Chromatography evidence | fission_yeast_phenotype | 69 Co-immunoprecipitation experiment | fission_yeast_phenotype | 967 Electrophoretic mobility shift assay data | fission_yeast_phenotype | 189 Enzyme assay data | fission_yeast_phenotype | 1888 Epitope-tagged protein immunolocalization experiment data | fission_yeast_phenotype | 47 Flow cytometry data | fission_yeast_phenotype | 2168 Immunolocalization experiment data | fission_yeast_phenotype | 23 Microscopy | fission_yeast_phenotype | 37257 Northern assay evidence | fission_yeast_phenotype | 118 Other | fission_yeast_phenotype | 1970 Other direct assay | fission_yeast_phenotype | 9 Particle size and count assay | fission_yeast_phenotype | 30 Plasmid maintenance assay evidence | fission_yeast_phenotype | 81 Substance quantification | fission_yeast_phenotype | 1 Substance quantification evidence | fission_yeast_phenotype | 1136 Western blot assay | fission_yeast_phenotype | 4328 cell growth assay evidence | fission_yeast_phenotype | 34373 competitive growth assay evidence | fission_yeast_phenotype | 1194 experimental phenotypic evidence | fission_yeast_phenotype | 493 gel electrophoresis evidence | fission_yeast_phenotype | 2478 high throughput nucleotide sequencing assay evidence | fission_yeast_phenotype | 206 microscopy evidence used in manual assertion | fission_yeast_phenotype | 659 quantitative PCR | fission_yeast_phenotype | 837 reporter gene assay evidence | fission_yeast_phenotype | 2827 sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | fission_yeast_phenotype | 22 transcript expression level evidence | fission_yeast_phenotype | 3795 tryptic phosphopeptide mapping assay evidence used in automatic assertion | fission_yeast_phenotype | 149 western blot evidence used in manual assertion | fission_yeast_phenotype | 147 experimental evidence | gene_ex | 20120 in situ hybridization assay evidence | gene_ex | 14 mass spectrometry evidence | gene_ex | 13682 protein expression level evidence based on western blot used in manual assertion | gene_ex | 2 Inferred from Sequence or Structural Similarity | genome_org | 13 Inferred from Sequence or Structural Similarity | m_f_g | 42 Inferred from Direct Assay | misc | 1 Inferred from Mutant Phenotype | misc | 4 Inferred from Physical Interaction | misc | 2 Inferred from Sequence or Structural Similarity | misc | 1 Inferred by Curator | molecular_function | 137 Inferred from Biological aspect of Ancestor | molecular_function | 867 Inferred from Direct Assay | molecular_function | 1954 Inferred from Electronic Annotation | molecular_function | 1603 Inferred from Experiment | molecular_function | 572 Inferred from Genetic Interaction | molecular_function | 125 Inferred from Key Residues | molecular_function | 1 Inferred from Mutant Phenotype | molecular_function | 840 Inferred from Physical Interaction | molecular_function | 2544 Inferred from Sequence Model | molecular_function | 1180 Inferred from Sequence Orthology | molecular_function | 1332 Inferred from Sequence or Structural Similarity | molecular_function | 464 Inferred from high throughput direct assay | molecular_function | 17 Inferred from high throughput mutant phenotype | molecular_function | 1535 Non-traceable Author Statement | molecular_function | 161 Traceable Author Statement | molecular_function | 137 Inferred from Direct Assay | sequence | 2 Inferred from Mutant Phenotype | sequence | 10 Inferred from Sequence or Structural Similarity | sequence | 355 Traceable Author Statement | sequence | 2 Inferred from Direct Assay | subunit_composition | 4 Inferred from Sequence or Structural Similarity | subunit_composition | 1 Inferred from Sequence or Structural Similarity | warning | 101 (126 rows) annotation counts by evidence code and cv type, sorted by count: ev_code | cv_name | count ----------------------------------------------------------------------------------+--------------------------+------- Inferred from Direct Assay | misc | 1 Inferred from Sequence or Structural Similarity | misc | 1 experimental evidence | PomGeneExProt | 1 Inferred from Mutant Phenotype | PSI-MOD | 1 Non-traceable Author Statement | complementation | 1 Substance quantification | fission_yeast_phenotype | 1 Traceable Author Statement | PSI-MOD | 1 Inferred from Sequence or Structural Similarity | subunit_composition | 1 Inferred from Key Residues | molecular_function | 1 Inferred from Direct Assay | sequence | 2 Traceable Author Statement | sequence | 2 Inferred from Physical Interaction | misc | 2 Inferred from Sequence Model | PSI-MOD | 2 protein expression level evidence based on western blot used in manual assertion | gene_ex | 2 sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | PomGeneExProt | 2 in situ hybridization evidence used in manual assertion | PomGeneExRNA | 3 quantitative PCR | PomGeneExProt | 3 Inferred from Direct Assay | subunit_composition | 4 Inferred from Mutant Phenotype | misc | 4 Traceable Author Statement | PomBase family or domain | 5 northern assay evidence used in manual assertion | PomGeneExProt | 5 Inferred from Sequence or Structural Similarity | PomBase family or domain | 5 Microscopy | PomGeneExProt | 5 immunofluorescence evidence | PomGeneExProt | 6 quantitative polymerase chain reaction evidence used in manual assertion | PomGeneExRNA | 8 Other direct assay | fission_yeast_phenotype | 9 Inferred from Mutant Phenotype | sequence | 10 fusion protein localization evidence | PomGeneExProt | 11 reporter gene assay evidence | PomGeneExRNA | 12 Inferred from Sequence or Structural Similarity | genome_org | 13 western blot evidence used in manual assertion | PomGeneExRNA | 13 in situ hybridization assay evidence | gene_ex | 14 transcript expression level evidence | PomGeneExRNA | 16 Inferred from high throughput direct assay | molecular_function | 17 Inferred from Expression Pattern | biological_process | 19 sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | fission_yeast_phenotype | 22 Immunolocalization experiment data | fission_yeast_phenotype | 23 Particle size and count assay | fission_yeast_phenotype | 30 Inferred from Sequence or Structural Similarity | m_f_g | 42 Inferred from Genetic Interaction | cellular_component | 46 Epitope-tagged protein immunolocalization experiment data | fission_yeast_phenotype | 47 Inferred from Mutant Phenotype | cellular_component | 56 RNA protection assay evidence | PomGeneExRNA | 58 reverse transcription polymerase chain reaction transcription evidence | PomGeneExRNA | 60 Western blot evidence | PomGeneExProt | 62 Chromatography evidence | fission_yeast_phenotype | 69 Plasmid maintenance assay evidence | fission_yeast_phenotype | 81 Inferred from Physical Interaction | biological_process | 86 Inferred from Sequence Model | cellular_component | 94 Inferred from Sequence or Structural Similarity | PSI-MOD | 99 Inferred from Sequence or Structural Similarity | warning | 101 Traceable Author Statement | cellular_component | 101 Northern assay evidence | PomGeneExRNA | 109 quantitative PCR | PomGeneExRNA | 110 Northern assay evidence | fission_yeast_phenotype | 118 Inferred from Genetic Interaction | molecular_function | 125 reporter gene assay evidence | PomGeneExProt | 134 Inferred by Curator | molecular_function | 137 Traceable Author Statement | molecular_function | 137 Traceable Author Statement | biological_process | 143 western blot evidence used in manual assertion | fission_yeast_phenotype | 147 tryptic phosphopeptide mapping assay evidence used in automatic assertion | fission_yeast_phenotype | 149 Non-traceable Author Statement | molecular_function | 161 Inferred from Sequence Model | biological_process | 178 Non-traceable Author Statement | cellular_component | 179 Electrophoretic mobility shift assay data | fission_yeast_phenotype | 189 experimental evidence | PomGeneExRNA | 198 high throughput nucleotide sequencing assay evidence | fission_yeast_phenotype | 206 Inferred from Physical Interaction | cellular_component | 282 Inferred from Experiment | cellular_component | 294 Inferred from Experiment | biological_process | 350 Inferred from Sequence or Structural Similarity | sequence | 355 Non-traceable Author Statement | biological_process | 372 Inferred from Sequence or Structural Similarity | cellular_component | 392 western blot evidence used in manual assertion | PomGeneExProt | 437 Inferred from Sequence or Structural Similarity | molecular_function | 464 experimental phenotypic evidence | fission_yeast_phenotype | 493 Inferred from Electronic Annotation | biological_process | 528 Inferred by Curator | cellular_component | 536 Inferred from Sequence or Structural Similarity | biological_process | 549 Inferred from Experiment | molecular_function | 572 Inferred from Genetic Interaction | biological_process | 593 mass spectrometry evidence | PomGeneExProt | 614 microscopy evidence used in manual assertion | fission_yeast_phenotype | 659 Inferred from Direct Assay | biological_process | 723 ribosome profiling evidence | PomGeneExRD | 737 northern assay evidence used in manual assertion | PomGeneExRNA | 796 quantitative PCR | fission_yeast_phenotype | 837 Inferred from Mutant Phenotype | molecular_function | 840 Inferred from Biological aspect of Ancestor | molecular_function | 867 Inferred from Electronic Annotation | cellular_component | 905 Co-immunoprecipitation experiment | fission_yeast_phenotype | 967 Inferred from Biological aspect of Ancestor | cellular_component | 979 Substance quantification evidence | fission_yeast_phenotype | 1136 Inferred by Curator | biological_process | 1146 Inferred from Sequence Model | molecular_function | 1180 competitive growth assay evidence | fission_yeast_phenotype | 1194 Inferred from Sequence Orthology | molecular_function | 1332 Inferred from Biological aspect of Ancestor | biological_process | 1342 Inferred from Sequence Orthology | cellular_component | 1489 Inferred from high throughput mutant phenotype | molecular_function | 1535 Inferred from Electronic Annotation | molecular_function | 1603 Enzyme assay data | fission_yeast_phenotype | 1888 Chromatin immunoprecipitation experiment | fission_yeast_phenotype | 1895 Inferred from Direct Assay | molecular_function | 1954 Other | fission_yeast_phenotype | 1970 Inferred from Sequence Orthology | biological_process | 2032 Flow cytometry data | fission_yeast_phenotype | 2168 gel electrophoresis evidence | fission_yeast_phenotype | 2478 Inferred from Physical Interaction | molecular_function | 2544 reporter gene assay evidence | fission_yeast_phenotype | 2827 Inferred from Direct Assay | PSI-MOD | 3108 mass spectrometry evidence | PSI-MOD | 3202 expression microarray evidence | PomGeneExRNA | 3515 transcript expression level evidence | fission_yeast_phenotype | 3795 Inferred from Mutant Phenotype | biological_process | 3803 RNA-sequencing evidence | PomGeneExRNA | 3823 Western blot assay | fission_yeast_phenotype | 4328 Inferred from Direct Assay | cellular_component | 5461 Inferred from high throughput direct assay | cellular_component | 6854 experimental evidence | PSI-MOD | 8141 mass spectrometry evidence | gene_ex | 13682 experimental evidence | gene_ex | 20120 cell growth assay evidence | fission_yeast_phenotype | 34373 tryptic phosphopeptide mapping assay evidence used in automatic assertion | PSI-MOD | 34916 Microscopy | fission_yeast_phenotype | 37257 (126 rows) annotation counts by evidence code and cv type, sorted by cv evidence code: ev_code | cv_name | count ----------------------------------------------------------------------------------+--------------------------+------- Chromatin immunoprecipitation experiment | fission_yeast_phenotype | 1895 Chromatography evidence | fission_yeast_phenotype | 69 Co-immunoprecipitation experiment | fission_yeast_phenotype | 967 Electrophoretic mobility shift assay data | fission_yeast_phenotype | 189 Enzyme assay data | fission_yeast_phenotype | 1888 Epitope-tagged protein immunolocalization experiment data | fission_yeast_phenotype | 47 Flow cytometry data | fission_yeast_phenotype | 2168 Immunolocalization experiment data | fission_yeast_phenotype | 23 Inferred by Curator | biological_process | 1146 Inferred by Curator | cellular_component | 536 Inferred by Curator | molecular_function | 137 Inferred from Biological aspect of Ancestor | biological_process | 1342 Inferred from Biological aspect of Ancestor | cellular_component | 979 Inferred from Biological aspect of Ancestor | molecular_function | 867 Inferred from Direct Assay | PSI-MOD | 3108 Inferred from Direct Assay | biological_process | 723 Inferred from Direct Assay | cellular_component | 5461 Inferred from Direct Assay | misc | 1 Inferred from Direct Assay | molecular_function | 1954 Inferred from Direct Assay | sequence | 2 Inferred from Direct Assay | subunit_composition | 4 Inferred from Electronic Annotation | biological_process | 528 Inferred from Electronic Annotation | cellular_component | 905 Inferred from Electronic Annotation | molecular_function | 1603 Inferred from Experiment | biological_process | 350 Inferred from Experiment | cellular_component | 294 Inferred from Experiment | molecular_function | 572 Inferred from Expression Pattern | biological_process | 19 Inferred from Genetic Interaction | biological_process | 593 Inferred from Genetic Interaction | cellular_component | 46 Inferred from Genetic Interaction | molecular_function | 125 Inferred from Key Residues | molecular_function | 1 Inferred from Mutant Phenotype | PSI-MOD | 1 Inferred from Mutant Phenotype | biological_process | 3803 Inferred from Mutant Phenotype | cellular_component | 56 Inferred from Mutant Phenotype | misc | 4 Inferred from Mutant Phenotype | molecular_function | 840 Inferred from Mutant Phenotype | sequence | 10 Inferred from Physical Interaction | biological_process | 86 Inferred from Physical Interaction | cellular_component | 282 Inferred from Physical Interaction | misc | 2 Inferred from Physical Interaction | molecular_function | 2544 Inferred from Sequence Model | PSI-MOD | 2 Inferred from Sequence Model | biological_process | 178 Inferred from Sequence Model | cellular_component | 94 Inferred from Sequence Model | molecular_function | 1180 Inferred from Sequence Orthology | biological_process | 2032 Inferred from Sequence Orthology | cellular_component | 1489 Inferred from Sequence Orthology | molecular_function | 1332 Inferred from Sequence or Structural Similarity | PSI-MOD | 99 Inferred from Sequence or Structural Similarity | PomBase family or domain | 5 Inferred from Sequence or Structural Similarity | biological_process | 549 Inferred from Sequence or Structural Similarity | cellular_component | 392 Inferred from Sequence or Structural Similarity | genome_org | 13 Inferred from Sequence or Structural Similarity | m_f_g | 42 Inferred from Sequence or Structural Similarity | misc | 1 Inferred from Sequence or Structural Similarity | molecular_function | 464 Inferred from Sequence or Structural Similarity | sequence | 355 Inferred from Sequence or Structural Similarity | subunit_composition | 1 Inferred from Sequence or Structural Similarity | warning | 101 Inferred from high throughput direct assay | cellular_component | 6854 Inferred from high throughput direct assay | molecular_function | 17 Inferred from high throughput mutant phenotype | molecular_function | 1535 Microscopy | PomGeneExProt | 5 Microscopy | fission_yeast_phenotype | 37257 Non-traceable Author Statement | biological_process | 372 Non-traceable Author Statement | cellular_component | 179 Non-traceable Author Statement | complementation | 1 Non-traceable Author Statement | molecular_function | 161 Northern assay evidence | PomGeneExRNA | 109 Northern assay evidence | fission_yeast_phenotype | 118 Other | fission_yeast_phenotype | 1970 Other direct assay | fission_yeast_phenotype | 9 Particle size and count assay | fission_yeast_phenotype | 30 Plasmid maintenance assay evidence | fission_yeast_phenotype | 81 RNA protection assay evidence | PomGeneExRNA | 58 RNA-sequencing evidence | PomGeneExRNA | 3823 Substance quantification | fission_yeast_phenotype | 1 Substance quantification evidence | fission_yeast_phenotype | 1136 Traceable Author Statement | PSI-MOD | 1 Traceable Author Statement | PomBase family or domain | 5 Traceable Author Statement | biological_process | 143 Traceable Author Statement | cellular_component | 101 Traceable Author Statement | molecular_function | 137 Traceable Author Statement | sequence | 2 Western blot assay | fission_yeast_phenotype | 4328 Western blot evidence | PomGeneExProt | 62 cell growth assay evidence | fission_yeast_phenotype | 34373 competitive growth assay evidence | fission_yeast_phenotype | 1194 experimental evidence | PSI-MOD | 8141 experimental evidence | PomGeneExProt | 1 experimental evidence | PomGeneExRNA | 198 experimental evidence | gene_ex | 20120 experimental phenotypic evidence | fission_yeast_phenotype | 493 expression microarray evidence | PomGeneExRNA | 3515 fusion protein localization evidence | PomGeneExProt | 11 gel electrophoresis evidence | fission_yeast_phenotype | 2478 high throughput nucleotide sequencing assay evidence | fission_yeast_phenotype | 206 immunofluorescence evidence | PomGeneExProt | 6 in situ hybridization assay evidence | gene_ex | 14 in situ hybridization evidence used in manual assertion | PomGeneExRNA | 3 mass spectrometry evidence | PSI-MOD | 3202 mass spectrometry evidence | PomGeneExProt | 614 mass spectrometry evidence | gene_ex | 13682 microscopy evidence used in manual assertion | fission_yeast_phenotype | 659 northern assay evidence used in manual assertion | PomGeneExProt | 5 northern assay evidence used in manual assertion | PomGeneExRNA | 796 protein expression level evidence based on western blot used in manual assertion | gene_ex | 2 quantitative PCR | PomGeneExProt | 3 quantitative PCR | PomGeneExRNA | 110 quantitative PCR | fission_yeast_phenotype | 837 quantitative polymerase chain reaction evidence used in manual assertion | PomGeneExRNA | 8 reporter gene assay evidence | PomGeneExProt | 134 reporter gene assay evidence | PomGeneExRNA | 12 reporter gene assay evidence | fission_yeast_phenotype | 2827 reverse transcription polymerase chain reaction transcription evidence | PomGeneExRNA | 60 ribosome profiling evidence | PomGeneExRD | 737 sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | PomGeneExProt | 2 sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | fission_yeast_phenotype | 22 transcript expression level evidence | PomGeneExRNA | 16 transcript expression level evidence | fission_yeast_phenotype | 3795 tryptic phosphopeptide mapping assay evidence used in automatic assertion | PSI-MOD | 34916 tryptic phosphopeptide mapping assay evidence used in automatic assertion | fission_yeast_phenotype | 149 western blot evidence used in manual assertion | PomGeneExProt | 437 western blot evidence used in manual assertion | PomGeneExRNA | 13 western blot evidence used in manual assertion | fission_yeast_phenotype | 147 (126 rows) total: count -------- 344933 (1 row) counts of annotation from Canto, by type: count | cv_name -------+------------------------------------ 44 | PomGeneExProt 150 | PomGeneExRNA 2179 | PSI-MOD 4379 | molecular_function 4392 | biological_process 5081 | cellular_component 33414 | PomBase annotation extension terms 65583 | fission_yeast_phenotype (8 rows) total ------- 81808 (1 row)