counts of all annotation by type: count | cv_name -------+-------------------------------------- 6 | external_link 22 | ex_tools 27 | cat_act 28 | pathway 90 | m_f_g 190 | subunit_composition 227 | genome_org 419 | misc 452 | complementation 737 | PomGeneExRD 826 | EC numbers 960 | sequence 966 | name_description 1287 | PomGeneExProt 1794 | warning 1866 | PomBase family or domain 4059 | kegg_pombe_pathway 4557 | mondo 5142 | PomBase gene characterisation status 8739 | PomGeneExRNA 11715 | biological_process 14251 | molecular_function 17729 | cellular_component 25147 | species_dist 33916 | gene_ex 49529 | PSI-MOD 67619 | PomBase gene products 99503 | fission_yeast_phenotype (28 rows) annotation counts by evidence code and cv type, sorted by cv name: ev_code | cv_name | count ----------------------------------------------------------------------------------+--------------------------+------- Inferred from Direct Assay | PSI-MOD | 3108 Inferred from Mutant Phenotype | PSI-MOD | 1 Inferred from Sequence Model | PSI-MOD | 2 Inferred from Sequence or Structural Similarity | PSI-MOD | 101 Traceable Author Statement | PSI-MOD | 1 experimental evidence | PSI-MOD | 8141 mass spectrometry evidence | PSI-MOD | 3202 tryptic phosphopeptide mapping assay evidence used in automatic assertion | PSI-MOD | 34916 Inferred from Sequence or Structural Similarity | PomBase family or domain | 5 Traceable Author Statement | PomBase family or domain | 5 Microscopy | PomGeneExProt | 5 Western blot evidence | PomGeneExProt | 63 experimental evidence | PomGeneExProt | 1 fusion protein localization evidence | PomGeneExProt | 11 immunofluorescence evidence | PomGeneExProt | 6 mass spectrometry evidence | PomGeneExProt | 614 northern assay evidence used in manual assertion | PomGeneExProt | 5 quantitative PCR | PomGeneExProt | 3 reporter gene assay evidence | PomGeneExProt | 134 sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | PomGeneExProt | 2 western blot evidence used in manual assertion | PomGeneExProt | 437 ribosome profiling evidence | PomGeneExRD | 737 Northern assay evidence | PomGeneExRNA | 109 RNA protection assay evidence | PomGeneExRNA | 58 RNA-sequencing evidence | PomGeneExRNA | 3825 experimental evidence | PomGeneExRNA | 198 expression microarray evidence | PomGeneExRNA | 3515 in situ hybridization evidence used in manual assertion | PomGeneExRNA | 3 northern assay evidence used in manual assertion | PomGeneExRNA | 796 quantitative PCR | PomGeneExRNA | 110 quantitative polymerase chain reaction evidence used in manual assertion | PomGeneExRNA | 8 reporter gene assay evidence | PomGeneExRNA | 12 reverse transcription polymerase chain reaction transcription evidence | PomGeneExRNA | 60 transcript expression level evidence | PomGeneExRNA | 16 western blot evidence used in manual assertion | PomGeneExRNA | 13 Inferred by Curator | biological_process | 1143 Inferred from Biological aspect of Ancestor | biological_process | 1337 Inferred from Direct Assay | biological_process | 713 Inferred from Electronic Annotation | biological_process | 510 Inferred from Experiment | biological_process | 361 Inferred from Expression Pattern | biological_process | 19 Inferred from Genetic Interaction | biological_process | 587 Inferred from Mutant Phenotype | biological_process | 3750 Inferred from Physical Interaction | biological_process | 84 Inferred from Sequence Model | biological_process | 170 Inferred from Sequence Orthology | biological_process | 1991 Inferred from Sequence or Structural Similarity | biological_process | 540 Non-traceable Author Statement | biological_process | 368 Traceable Author Statement | biological_process | 142 Inferred by Curator | cellular_component | 534 Inferred from Biological aspect of Ancestor | cellular_component | 987 Inferred from Direct Assay | cellular_component | 5455 Inferred from Electronic Annotation | cellular_component | 905 Inferred from Experiment | cellular_component | 312 Inferred from Genetic Interaction | cellular_component | 46 Inferred from Mutant Phenotype | cellular_component | 58 Inferred from Physical Interaction | cellular_component | 327 Inferred from Sequence Model | cellular_component | 94 Inferred from Sequence Orthology | cellular_component | 1485 Inferred from Sequence or Structural Similarity | cellular_component | 392 Inferred from high throughput direct assay | cellular_component | 6854 Non-traceable Author Statement | cellular_component | 179 Traceable Author Statement | cellular_component | 101 Non-traceable Author Statement | complementation | 1 Chromatin immunoprecipitation experiment | fission_yeast_phenotype | 1895 Chromatography evidence | fission_yeast_phenotype | 69 Co-immunoprecipitation experiment | fission_yeast_phenotype | 962 Electrophoretic mobility shift assay data | fission_yeast_phenotype | 193 Enzyme assay data | fission_yeast_phenotype | 1917 Epitope-tagged protein immunolocalization experiment data | fission_yeast_phenotype | 47 Flow cytometry data | fission_yeast_phenotype | 2168 Immunolocalization experiment data | fission_yeast_phenotype | 23 Microscopy | fission_yeast_phenotype | 37274 Northern assay evidence | fission_yeast_phenotype | 118 Other | fission_yeast_phenotype | 1984 Other direct assay | fission_yeast_phenotype | 9 Particle size and count assay | fission_yeast_phenotype | 30 Plasmid maintenance assay evidence | fission_yeast_phenotype | 80 Substance quantification evidence | fission_yeast_phenotype | 1140 Western blot assay | fission_yeast_phenotype | 4343 cell growth assay evidence | fission_yeast_phenotype | 34415 competitive growth assay evidence | fission_yeast_phenotype | 1194 experimental phenotypic evidence | fission_yeast_phenotype | 493 gel electrophoresis evidence | fission_yeast_phenotype | 2477 high throughput nucleotide sequencing assay evidence | fission_yeast_phenotype | 206 microscopy evidence used in manual assertion | fission_yeast_phenotype | 659 quantitative PCR | fission_yeast_phenotype | 837 reporter gene assay evidence | fission_yeast_phenotype | 2841 sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | fission_yeast_phenotype | 22 transcript expression level evidence | fission_yeast_phenotype | 3810 tryptic phosphopeptide mapping assay evidence used in automatic assertion | fission_yeast_phenotype | 149 western blot evidence used in manual assertion | fission_yeast_phenotype | 147 experimental evidence | gene_ex | 20218 in situ hybridization assay evidence | gene_ex | 14 mass spectrometry evidence | gene_ex | 13682 protein expression level evidence based on western blot used in manual assertion | gene_ex | 2 Inferred from Sequence or Structural Similarity | genome_org | 13 Inferred from Sequence or Structural Similarity | m_f_g | 42 Inferred from Direct Assay | misc | 1 Inferred from Mutant Phenotype | misc | 4 Inferred from Physical Interaction | misc | 2 Inferred from Sequence or Structural Similarity | misc | 1 Inferred by Curator | molecular_function | 137 Inferred from Biological aspect of Ancestor | molecular_function | 860 Inferred from Direct Assay | molecular_function | 1952 Inferred from Electronic Annotation | molecular_function | 1692 Inferred from Experiment | molecular_function | 582 Inferred from Genetic Interaction | molecular_function | 124 Inferred from Key Residues | molecular_function | 1 Inferred from Mutant Phenotype | molecular_function | 845 Inferred from Physical Interaction | molecular_function | 3236 Inferred from Sequence Model | molecular_function | 1183 Inferred from Sequence Orthology | molecular_function | 1326 Inferred from Sequence or Structural Similarity | molecular_function | 463 Inferred from high throughput direct assay | molecular_function | 17 Inferred from high throughput mutant phenotype | molecular_function | 1535 Non-traceable Author Statement | molecular_function | 161 Traceable Author Statement | molecular_function | 137 Inferred from Direct Assay | sequence | 2 Inferred from Mutant Phenotype | sequence | 10 Inferred from Sequence or Structural Similarity | sequence | 355 Traceable Author Statement | sequence | 2 Inferred from Direct Assay | subunit_composition | 4 Inferred from Sequence or Structural Similarity | subunit_composition | 1 Inferred from Sequence or Structural Similarity | warning | 100 (125 rows) annotation counts by evidence code and cv type, sorted by count: ev_code | cv_name | count ----------------------------------------------------------------------------------+--------------------------+------- Non-traceable Author Statement | complementation | 1 Inferred from Mutant Phenotype | PSI-MOD | 1 Inferred from Sequence or Structural Similarity | subunit_composition | 1 Traceable Author Statement | PSI-MOD | 1 Inferred from Sequence or Structural Similarity | misc | 1 Inferred from Key Residues | molecular_function | 1 experimental evidence | PomGeneExProt | 1 Inferred from Direct Assay | misc | 1 Inferred from Physical Interaction | misc | 2 Inferred from Direct Assay | sequence | 2 sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | PomGeneExProt | 2 protein expression level evidence based on western blot used in manual assertion | gene_ex | 2 Inferred from Sequence Model | PSI-MOD | 2 Traceable Author Statement | sequence | 2 quantitative PCR | PomGeneExProt | 3 in situ hybridization evidence used in manual assertion | PomGeneExRNA | 3 Inferred from Direct Assay | subunit_composition | 4 Inferred from Mutant Phenotype | misc | 4 Traceable Author Statement | PomBase family or domain | 5 Inferred from Sequence or Structural Similarity | PomBase family or domain | 5 Microscopy | PomGeneExProt | 5 northern assay evidence used in manual assertion | PomGeneExProt | 5 immunofluorescence evidence | PomGeneExProt | 6 quantitative polymerase chain reaction evidence used in manual assertion | PomGeneExRNA | 8 Other direct assay | fission_yeast_phenotype | 9 Inferred from Mutant Phenotype | sequence | 10 fusion protein localization evidence | PomGeneExProt | 11 reporter gene assay evidence | PomGeneExRNA | 12 Inferred from Sequence or Structural Similarity | genome_org | 13 western blot evidence used in manual assertion | PomGeneExRNA | 13 in situ hybridization assay evidence | gene_ex | 14 transcript expression level evidence | PomGeneExRNA | 16 Inferred from high throughput direct assay | molecular_function | 17 Inferred from Expression Pattern | biological_process | 19 sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | fission_yeast_phenotype | 22 Immunolocalization experiment data | fission_yeast_phenotype | 23 Particle size and count assay | fission_yeast_phenotype | 30 Inferred from Sequence or Structural Similarity | m_f_g | 42 Inferred from Genetic Interaction | cellular_component | 46 Epitope-tagged protein immunolocalization experiment data | fission_yeast_phenotype | 47 RNA protection assay evidence | PomGeneExRNA | 58 Inferred from Mutant Phenotype | cellular_component | 58 reverse transcription polymerase chain reaction transcription evidence | PomGeneExRNA | 60 Western blot evidence | PomGeneExProt | 63 Chromatography evidence | fission_yeast_phenotype | 69 Plasmid maintenance assay evidence | fission_yeast_phenotype | 80 Inferred from Physical Interaction | biological_process | 84 Inferred from Sequence Model | cellular_component | 94 Inferred from Sequence or Structural Similarity | warning | 100 Traceable Author Statement | cellular_component | 101 Inferred from Sequence or Structural Similarity | PSI-MOD | 101 Northern assay evidence | PomGeneExRNA | 109 quantitative PCR | PomGeneExRNA | 110 Northern assay evidence | fission_yeast_phenotype | 118 Inferred from Genetic Interaction | molecular_function | 124 reporter gene assay evidence | PomGeneExProt | 134 Traceable Author Statement | molecular_function | 137 Inferred by Curator | molecular_function | 137 Traceable Author Statement | biological_process | 142 western blot evidence used in manual assertion | fission_yeast_phenotype | 147 tryptic phosphopeptide mapping assay evidence used in automatic assertion | fission_yeast_phenotype | 149 Non-traceable Author Statement | molecular_function | 161 Inferred from Sequence Model | biological_process | 170 Non-traceable Author Statement | cellular_component | 179 Electrophoretic mobility shift assay data | fission_yeast_phenotype | 193 experimental evidence | PomGeneExRNA | 198 high throughput nucleotide sequencing assay evidence | fission_yeast_phenotype | 206 Inferred from Experiment | cellular_component | 312 Inferred from Physical Interaction | cellular_component | 327 Inferred from Sequence or Structural Similarity | sequence | 355 Inferred from Experiment | biological_process | 361 Non-traceable Author Statement | biological_process | 368 Inferred from Sequence or Structural Similarity | cellular_component | 392 western blot evidence used in manual assertion | PomGeneExProt | 437 Inferred from Sequence or Structural Similarity | molecular_function | 463 experimental phenotypic evidence | fission_yeast_phenotype | 493 Inferred from Electronic Annotation | biological_process | 510 Inferred by Curator | cellular_component | 534 Inferred from Sequence or Structural Similarity | biological_process | 540 Inferred from Experiment | molecular_function | 582 Inferred from Genetic Interaction | biological_process | 587 mass spectrometry evidence | PomGeneExProt | 614 microscopy evidence used in manual assertion | fission_yeast_phenotype | 659 Inferred from Direct Assay | biological_process | 713 ribosome profiling evidence | PomGeneExRD | 737 northern assay evidence used in manual assertion | PomGeneExRNA | 796 quantitative PCR | fission_yeast_phenotype | 837 Inferred from Mutant Phenotype | molecular_function | 845 Inferred from Biological aspect of Ancestor | molecular_function | 860 Inferred from Electronic Annotation | cellular_component | 905 Co-immunoprecipitation experiment | fission_yeast_phenotype | 962 Inferred from Biological aspect of Ancestor | cellular_component | 987 Substance quantification evidence | fission_yeast_phenotype | 1140 Inferred by Curator | biological_process | 1143 Inferred from Sequence Model | molecular_function | 1183 competitive growth assay evidence | fission_yeast_phenotype | 1194 Inferred from Sequence Orthology | molecular_function | 1326 Inferred from Biological aspect of Ancestor | biological_process | 1337 Inferred from Sequence Orthology | cellular_component | 1485 Inferred from high throughput mutant phenotype | molecular_function | 1535 Inferred from Electronic Annotation | molecular_function | 1692 Chromatin immunoprecipitation experiment | fission_yeast_phenotype | 1895 Enzyme assay data | fission_yeast_phenotype | 1917 Inferred from Direct Assay | molecular_function | 1952 Other | fission_yeast_phenotype | 1984 Inferred from Sequence Orthology | biological_process | 1991 Flow cytometry data | fission_yeast_phenotype | 2168 gel electrophoresis evidence | fission_yeast_phenotype | 2477 reporter gene assay evidence | fission_yeast_phenotype | 2841 Inferred from Direct Assay | PSI-MOD | 3108 mass spectrometry evidence | PSI-MOD | 3202 Inferred from Physical Interaction | molecular_function | 3236 expression microarray evidence | PomGeneExRNA | 3515 Inferred from Mutant Phenotype | biological_process | 3750 transcript expression level evidence | fission_yeast_phenotype | 3810 RNA-sequencing evidence | PomGeneExRNA | 3825 Western blot assay | fission_yeast_phenotype | 4343 Inferred from Direct Assay | cellular_component | 5455 Inferred from high throughput direct assay | cellular_component | 6854 experimental evidence | PSI-MOD | 8141 mass spectrometry evidence | gene_ex | 13682 experimental evidence | gene_ex | 20218 cell growth assay evidence | fission_yeast_phenotype | 34415 tryptic phosphopeptide mapping assay evidence used in automatic assertion | PSI-MOD | 34916 Microscopy | fission_yeast_phenotype | 37274 (125 rows) annotation counts by evidence code and cv type, sorted by cv evidence code: ev_code | cv_name | count ----------------------------------------------------------------------------------+--------------------------+------- Chromatin immunoprecipitation experiment | fission_yeast_phenotype | 1895 Chromatography evidence | fission_yeast_phenotype | 69 Co-immunoprecipitation experiment | fission_yeast_phenotype | 962 Electrophoretic mobility shift assay data | fission_yeast_phenotype | 193 Enzyme assay data | fission_yeast_phenotype | 1917 Epitope-tagged protein immunolocalization experiment data | fission_yeast_phenotype | 47 Flow cytometry data | fission_yeast_phenotype | 2168 Immunolocalization experiment data | fission_yeast_phenotype | 23 Inferred by Curator | biological_process | 1143 Inferred by Curator | cellular_component | 534 Inferred by Curator | molecular_function | 137 Inferred from Biological aspect of Ancestor | biological_process | 1337 Inferred from Biological aspect of Ancestor | cellular_component | 987 Inferred from Biological aspect of Ancestor | molecular_function | 860 Inferred from Direct Assay | PSI-MOD | 3108 Inferred from Direct Assay | biological_process | 713 Inferred from Direct Assay | cellular_component | 5455 Inferred from Direct Assay | misc | 1 Inferred from Direct Assay | molecular_function | 1952 Inferred from Direct Assay | sequence | 2 Inferred from Direct Assay | subunit_composition | 4 Inferred from Electronic Annotation | biological_process | 510 Inferred from Electronic Annotation | cellular_component | 905 Inferred from Electronic Annotation | molecular_function | 1692 Inferred from Experiment | biological_process | 361 Inferred from Experiment | cellular_component | 312 Inferred from Experiment | molecular_function | 582 Inferred from Expression Pattern | biological_process | 19 Inferred from Genetic Interaction | biological_process | 587 Inferred from Genetic Interaction | cellular_component | 46 Inferred from Genetic Interaction | molecular_function | 124 Inferred from Key Residues | molecular_function | 1 Inferred from Mutant Phenotype | PSI-MOD | 1 Inferred from Mutant Phenotype | biological_process | 3750 Inferred from Mutant Phenotype | cellular_component | 58 Inferred from Mutant Phenotype | misc | 4 Inferred from Mutant Phenotype | molecular_function | 845 Inferred from Mutant Phenotype | sequence | 10 Inferred from Physical Interaction | biological_process | 84 Inferred from Physical Interaction | cellular_component | 327 Inferred from Physical Interaction | misc | 2 Inferred from Physical Interaction | molecular_function | 3236 Inferred from Sequence Model | PSI-MOD | 2 Inferred from Sequence Model | biological_process | 170 Inferred from Sequence Model | cellular_component | 94 Inferred from Sequence Model | molecular_function | 1183 Inferred from Sequence Orthology | biological_process | 1991 Inferred from Sequence Orthology | cellular_component | 1485 Inferred from Sequence Orthology | molecular_function | 1326 Inferred from Sequence or Structural Similarity | PSI-MOD | 101 Inferred from Sequence or Structural Similarity | PomBase family or domain | 5 Inferred from Sequence or Structural Similarity | biological_process | 540 Inferred from Sequence or Structural Similarity | cellular_component | 392 Inferred from Sequence or Structural Similarity | genome_org | 13 Inferred from Sequence or Structural Similarity | m_f_g | 42 Inferred from Sequence or Structural Similarity | misc | 1 Inferred from Sequence or Structural Similarity | molecular_function | 463 Inferred from Sequence or Structural Similarity | sequence | 355 Inferred from Sequence or Structural Similarity | subunit_composition | 1 Inferred from Sequence or Structural Similarity | warning | 100 Inferred from high throughput direct assay | cellular_component | 6854 Inferred from high throughput direct assay | molecular_function | 17 Inferred from high throughput mutant phenotype | molecular_function | 1535 Microscopy | PomGeneExProt | 5 Microscopy | fission_yeast_phenotype | 37274 Non-traceable Author Statement | biological_process | 368 Non-traceable Author Statement | cellular_component | 179 Non-traceable Author Statement | complementation | 1 Non-traceable Author Statement | molecular_function | 161 Northern assay evidence | PomGeneExRNA | 109 Northern assay evidence | fission_yeast_phenotype | 118 Other | fission_yeast_phenotype | 1984 Other direct assay | fission_yeast_phenotype | 9 Particle size and count assay | fission_yeast_phenotype | 30 Plasmid maintenance assay evidence | fission_yeast_phenotype | 80 RNA protection assay evidence | PomGeneExRNA | 58 RNA-sequencing evidence | PomGeneExRNA | 3825 Substance quantification evidence | fission_yeast_phenotype | 1140 Traceable Author Statement | PSI-MOD | 1 Traceable Author Statement | PomBase family or domain | 5 Traceable Author Statement | biological_process | 142 Traceable Author Statement | cellular_component | 101 Traceable Author Statement | molecular_function | 137 Traceable Author Statement | sequence | 2 Western blot assay | fission_yeast_phenotype | 4343 Western blot evidence | PomGeneExProt | 63 cell growth assay evidence | fission_yeast_phenotype | 34415 competitive growth assay evidence | fission_yeast_phenotype | 1194 experimental evidence | PSI-MOD | 8141 experimental evidence | PomGeneExProt | 1 experimental evidence | PomGeneExRNA | 198 experimental evidence | gene_ex | 20218 experimental phenotypic evidence | fission_yeast_phenotype | 493 expression microarray evidence | PomGeneExRNA | 3515 fusion protein localization evidence | PomGeneExProt | 11 gel electrophoresis evidence | fission_yeast_phenotype | 2477 high throughput nucleotide sequencing assay evidence | fission_yeast_phenotype | 206 immunofluorescence evidence | PomGeneExProt | 6 in situ hybridization assay evidence | gene_ex | 14 in situ hybridization evidence used in manual assertion | PomGeneExRNA | 3 mass spectrometry evidence | PSI-MOD | 3202 mass spectrometry evidence | PomGeneExProt | 614 mass spectrometry evidence | gene_ex | 13682 microscopy evidence used in manual assertion | fission_yeast_phenotype | 659 northern assay evidence used in manual assertion | PomGeneExProt | 5 northern assay evidence used in manual assertion | PomGeneExRNA | 796 protein expression level evidence based on western blot used in manual assertion | gene_ex | 2 quantitative PCR | PomGeneExProt | 3 quantitative PCR | PomGeneExRNA | 110 quantitative PCR | fission_yeast_phenotype | 837 quantitative polymerase chain reaction evidence used in manual assertion | PomGeneExRNA | 8 reporter gene assay evidence | PomGeneExProt | 134 reporter gene assay evidence | PomGeneExRNA | 12 reporter gene assay evidence | fission_yeast_phenotype | 2841 reverse transcription polymerase chain reaction transcription evidence | PomGeneExRNA | 60 ribosome profiling evidence | PomGeneExRD | 737 sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | PomGeneExProt | 2 sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | fission_yeast_phenotype | 22 transcript expression level evidence | PomGeneExRNA | 16 transcript expression level evidence | fission_yeast_phenotype | 3810 tryptic phosphopeptide mapping assay evidence used in automatic assertion | PSI-MOD | 34916 tryptic phosphopeptide mapping assay evidence used in automatic assertion | fission_yeast_phenotype | 149 western blot evidence used in manual assertion | PomGeneExProt | 437 western blot evidence used in manual assertion | PomGeneExRNA | 13 western blot evidence used in manual assertion | fission_yeast_phenotype | 147 (125 rows) total: count -------- 351803 (1 row) counts of annotation from Canto, by type: count | cv_name -------+------------------------------------ 45 | PomGeneExProt 151 | PomGeneExRNA 2179 | PSI-MOD 4347 | biological_process 4393 | molecular_function 5092 | cellular_component 33516 | PomBase annotation extension terms 65730 | fission_yeast_phenotype (8 rows) total ------- 81937 (1 row)