counts of all annotation by type: count | cv_name -------+-------------------------------------- 6 | external_link 22 | ex_tools 27 | cat_act 28 | pathway 90 | m_f_g 191 | subunit_composition 227 | genome_org 419 | misc 452 | complementation 737 | PomGeneExRD 826 | EC numbers 959 | sequence 965 | name_description 1291 | PomGeneExProt 1787 | warning 1866 | PomBase family or domain 4058 | kegg_pombe_pathway 4555 | mondo 5142 | PomBase gene characterisation status 8742 | PomGeneExRNA 11691 | biological_process 14286 | molecular_function 17731 | cellular_component 25143 | species_dist 33908 | gene_ex 50817 | PSI-MOD 67636 | PomBase gene products 99610 | fission_yeast_phenotype (28 rows) annotation counts by evidence code and cv type, sorted by cv name: ev_code | cv_name | count ----------------------------------------------------------------------------------+--------------------------+------- Inferred from Direct Assay | PSI-MOD | 3109 Inferred from Mutant Phenotype | PSI-MOD | 1 Inferred from Sequence Model | PSI-MOD | 2 Inferred from Sequence or Structural Similarity | PSI-MOD | 101 Traceable Author Statement | PSI-MOD | 1 differential hybridization evidence | PSI-MOD | 1287 experimental evidence | PSI-MOD | 8141 mass spectrometry evidence | PSI-MOD | 3202 tryptic phosphopeptide mapping assay evidence used in automatic assertion | PSI-MOD | 34916 Inferred from Sequence or Structural Similarity | PomBase family or domain | 5 Traceable Author Statement | PomBase family or domain | 5 Microscopy | PomGeneExProt | 6 Western blot evidence | PomGeneExProt | 64 experimental evidence | PomGeneExProt | 1 fusion protein localization evidence | PomGeneExProt | 11 immunofluorescence evidence | PomGeneExProt | 6 mass spectrometry evidence | PomGeneExProt | 614 northern assay evidence used in manual assertion | PomGeneExProt | 5 quantitative PCR | PomGeneExProt | 3 reporter gene assay evidence | PomGeneExProt | 136 sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | PomGeneExProt | 2 western blot evidence used in manual assertion | PomGeneExProt | 437 ribosome profiling evidence | PomGeneExRD | 737 Northern assay evidence | PomGeneExRNA | 109 RNA protection assay evidence | PomGeneExRNA | 58 RNA-sequencing evidence | PomGeneExRNA | 3822 differential hybridization evidence | PomGeneExRNA | 1 experimental evidence | PomGeneExRNA | 198 expression microarray evidence | PomGeneExRNA | 3517 in situ hybridization evidence used in manual assertion | PomGeneExRNA | 5 northern assay evidence used in manual assertion | PomGeneExRNA | 796 quantitative PCR | PomGeneExRNA | 111 quantitative polymerase chain reaction evidence used in manual assertion | PomGeneExRNA | 8 reporter gene assay evidence | PomGeneExRNA | 12 reverse transcription polymerase chain reaction transcription evidence | PomGeneExRNA | 60 transcript expression level evidence | PomGeneExRNA | 16 western blot evidence used in manual assertion | PomGeneExRNA | 13 Inferred by Curator | biological_process | 1197 Inferred from Biological aspect of Ancestor | biological_process | 1313 Inferred from Direct Assay | biological_process | 700 Inferred from Electronic Annotation | biological_process | 519 Inferred from Experiment | biological_process | 366 Inferred from Expression Pattern | biological_process | 19 Inferred from Genetic Interaction | biological_process | 584 Inferred from Mutant Phenotype | biological_process | 3738 Inferred from Physical Interaction | biological_process | 71 Inferred from Sequence Model | biological_process | 169 Inferred from Sequence Orthology | biological_process | 1978 Inferred from Sequence or Structural Similarity | biological_process | 535 Non-traceable Author Statement | biological_process | 364 Traceable Author Statement | biological_process | 138 Inferred by Curator | cellular_component | 543 Inferred from Biological aspect of Ancestor | cellular_component | 982 Inferred from Direct Assay | cellular_component | 5456 Inferred from Electronic Annotation | cellular_component | 910 Inferred from Experiment | cellular_component | 312 Inferred from Genetic Interaction | cellular_component | 46 Inferred from Mutant Phenotype | cellular_component | 58 Inferred from Physical Interaction | cellular_component | 327 Inferred from Sequence Model | cellular_component | 94 Inferred from Sequence Orthology | cellular_component | 1482 Inferred from Sequence or Structural Similarity | cellular_component | 390 Inferred from high throughput direct assay | cellular_component | 6853 Non-traceable Author Statement | cellular_component | 177 Traceable Author Statement | cellular_component | 101 Non-traceable Author Statement | complementation | 1 Chromatin immunoprecipitation experiment | fission_yeast_phenotype | 1898 Chromatography evidence | fission_yeast_phenotype | 69 Co-immunoprecipitation experiment | fission_yeast_phenotype | 967 Electrophoretic mobility shift assay data | fission_yeast_phenotype | 193 Enzyme assay data | fission_yeast_phenotype | 1917 Epitope-tagged protein immunolocalization experiment data | fission_yeast_phenotype | 47 Flow cytometry data | fission_yeast_phenotype | 2167 Immunolocalization experiment data | fission_yeast_phenotype | 23 Microscopy | fission_yeast_phenotype | 37293 Northern assay evidence | fission_yeast_phenotype | 118 Other | fission_yeast_phenotype | 1985 Other direct assay | fission_yeast_phenotype | 9 Particle size and count assay | fission_yeast_phenotype | 30 Plasmid maintenance assay evidence | fission_yeast_phenotype | 80 Substance quantification | fission_yeast_phenotype | 1140 Western blot assay | fission_yeast_phenotype | 4364 cell growth assay evidence | fission_yeast_phenotype | 34459 competitive growth assay evidence | fission_yeast_phenotype | 1194 experimental phenotypic evidence | fission_yeast_phenotype | 493 gel electrophoresis evidence | fission_yeast_phenotype | 2477 high throughput nucleotide sequencing assay evidence | fission_yeast_phenotype | 206 microscopy evidence used in manual assertion | fission_yeast_phenotype | 659 quantitative PCR | fission_yeast_phenotype | 845 reporter gene assay evidence | fission_yeast_phenotype | 2846 sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | fission_yeast_phenotype | 22 transcript expression level evidence | fission_yeast_phenotype | 3813 tryptic phosphopeptide mapping assay evidence used in automatic assertion | fission_yeast_phenotype | 149 western blot evidence used in manual assertion | fission_yeast_phenotype | 147 experimental evidence | gene_ex | 20210 in situ hybridization assay evidence | gene_ex | 14 mass spectrometry evidence | gene_ex | 13682 protein expression level evidence based on western blot used in manual assertion | gene_ex | 2 Inferred from Sequence or Structural Similarity | genome_org | 13 Inferred from Sequence or Structural Similarity | m_f_g | 42 Inferred from Direct Assay | misc | 1 Inferred from Mutant Phenotype | misc | 4 Inferred from Physical Interaction | misc | 2 Inferred from Sequence or Structural Similarity | misc | 1 Inferred by Curator | molecular_function | 137 Inferred from Biological aspect of Ancestor | molecular_function | 846 Inferred from Direct Assay | molecular_function | 1953 Inferred from Electronic Annotation | molecular_function | 1735 Inferred from Experiment | molecular_function | 583 Inferred from Genetic Interaction | molecular_function | 124 Inferred from Key Residues | molecular_function | 1 Inferred from Mutant Phenotype | molecular_function | 847 Inferred from Physical Interaction | molecular_function | 3238 Inferred from Sequence Model | molecular_function | 1180 Inferred from Sequence Orthology | molecular_function | 1329 Inferred from Sequence or Structural Similarity | molecular_function | 463 Inferred from high throughput direct assay | molecular_function | 17 Inferred from high throughput mutant phenotype | molecular_function | 1535 Non-traceable Author Statement | molecular_function | 160 Traceable Author Statement | molecular_function | 138 Inferred from Direct Assay | sequence | 2 Inferred from Mutant Phenotype | sequence | 10 Inferred from Sequence or Structural Similarity | sequence | 354 Traceable Author Statement | sequence | 2 Inferred from Direct Assay | subunit_composition | 4 Inferred from Sequence or Structural Similarity | subunit_composition | 1 Inferred from Sequence or Structural Similarity | warning | 100 (127 rows) annotation counts by evidence code and cv type, sorted by count: ev_code | cv_name | count ----------------------------------------------------------------------------------+--------------------------+------- Inferred from Mutant Phenotype | PSI-MOD | 1 Inferred from Direct Assay | misc | 1 Inferred from Sequence or Structural Similarity | subunit_composition | 1 Traceable Author Statement | PSI-MOD | 1 Inferred from Sequence or Structural Similarity | misc | 1 differential hybridization evidence | PomGeneExRNA | 1 experimental evidence | PomGeneExProt | 1 Inferred from Key Residues | molecular_function | 1 Non-traceable Author Statement | complementation | 1 Traceable Author Statement | sequence | 2 Inferred from Direct Assay | sequence | 2 sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | PomGeneExProt | 2 protein expression level evidence based on western blot used in manual assertion | gene_ex | 2 Inferred from Sequence Model | PSI-MOD | 2 Inferred from Physical Interaction | misc | 2 quantitative PCR | PomGeneExProt | 3 Inferred from Mutant Phenotype | misc | 4 Inferred from Direct Assay | subunit_composition | 4 in situ hybridization evidence used in manual assertion | PomGeneExRNA | 5 Inferred from Sequence or Structural Similarity | PomBase family or domain | 5 northern assay evidence used in manual assertion | PomGeneExProt | 5 Traceable Author Statement | PomBase family or domain | 5 Microscopy | PomGeneExProt | 6 immunofluorescence evidence | PomGeneExProt | 6 quantitative polymerase chain reaction evidence used in manual assertion | PomGeneExRNA | 8 Other direct assay | fission_yeast_phenotype | 9 Inferred from Mutant Phenotype | sequence | 10 fusion protein localization evidence | PomGeneExProt | 11 reporter gene assay evidence | PomGeneExRNA | 12 Inferred from Sequence or Structural Similarity | genome_org | 13 western blot evidence used in manual assertion | PomGeneExRNA | 13 in situ hybridization assay evidence | gene_ex | 14 transcript expression level evidence | PomGeneExRNA | 16 Inferred from high throughput direct assay | molecular_function | 17 Inferred from Expression Pattern | biological_process | 19 sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | fission_yeast_phenotype | 22 Immunolocalization experiment data | fission_yeast_phenotype | 23 Particle size and count assay | fission_yeast_phenotype | 30 Inferred from Sequence or Structural Similarity | m_f_g | 42 Inferred from Genetic Interaction | cellular_component | 46 Epitope-tagged protein immunolocalization experiment data | fission_yeast_phenotype | 47 RNA protection assay evidence | PomGeneExRNA | 58 Inferred from Mutant Phenotype | cellular_component | 58 reverse transcription polymerase chain reaction transcription evidence | PomGeneExRNA | 60 Western blot evidence | PomGeneExProt | 64 Chromatography evidence | fission_yeast_phenotype | 69 Inferred from Physical Interaction | biological_process | 71 Plasmid maintenance assay evidence | fission_yeast_phenotype | 80 Inferred from Sequence Model | cellular_component | 94 Inferred from Sequence or Structural Similarity | warning | 100 Inferred from Sequence or Structural Similarity | PSI-MOD | 101 Traceable Author Statement | cellular_component | 101 Northern assay evidence | PomGeneExRNA | 109 quantitative PCR | PomGeneExRNA | 111 Northern assay evidence | fission_yeast_phenotype | 118 Inferred from Genetic Interaction | molecular_function | 124 reporter gene assay evidence | PomGeneExProt | 136 Inferred by Curator | molecular_function | 137 Traceable Author Statement | biological_process | 138 Traceable Author Statement | molecular_function | 138 western blot evidence used in manual assertion | fission_yeast_phenotype | 147 tryptic phosphopeptide mapping assay evidence used in automatic assertion | fission_yeast_phenotype | 149 Non-traceable Author Statement | molecular_function | 160 Inferred from Sequence Model | biological_process | 169 Non-traceable Author Statement | cellular_component | 177 Electrophoretic mobility shift assay data | fission_yeast_phenotype | 193 experimental evidence | PomGeneExRNA | 198 high throughput nucleotide sequencing assay evidence | fission_yeast_phenotype | 206 Inferred from Experiment | cellular_component | 312 Inferred from Physical Interaction | cellular_component | 327 Inferred from Sequence or Structural Similarity | sequence | 354 Non-traceable Author Statement | biological_process | 364 Inferred from Experiment | biological_process | 366 Inferred from Sequence or Structural Similarity | cellular_component | 390 western blot evidence used in manual assertion | PomGeneExProt | 437 Inferred from Sequence or Structural Similarity | molecular_function | 463 experimental phenotypic evidence | fission_yeast_phenotype | 493 Inferred from Electronic Annotation | biological_process | 519 Inferred from Sequence or Structural Similarity | biological_process | 535 Inferred by Curator | cellular_component | 543 Inferred from Experiment | molecular_function | 583 Inferred from Genetic Interaction | biological_process | 584 mass spectrometry evidence | PomGeneExProt | 614 microscopy evidence used in manual assertion | fission_yeast_phenotype | 659 Inferred from Direct Assay | biological_process | 700 ribosome profiling evidence | PomGeneExRD | 737 northern assay evidence used in manual assertion | PomGeneExRNA | 796 quantitative PCR | fission_yeast_phenotype | 845 Inferred from Biological aspect of Ancestor | molecular_function | 846 Inferred from Mutant Phenotype | molecular_function | 847 Inferred from Electronic Annotation | cellular_component | 910 Co-immunoprecipitation experiment | fission_yeast_phenotype | 967 Inferred from Biological aspect of Ancestor | cellular_component | 982 Substance quantification | fission_yeast_phenotype | 1140 Inferred from Sequence Model | molecular_function | 1180 competitive growth assay evidence | fission_yeast_phenotype | 1194 Inferred by Curator | biological_process | 1197 differential hybridization evidence | PSI-MOD | 1287 Inferred from Biological aspect of Ancestor | biological_process | 1313 Inferred from Sequence Orthology | molecular_function | 1329 Inferred from Sequence Orthology | cellular_component | 1482 Inferred from high throughput mutant phenotype | molecular_function | 1535 Inferred from Electronic Annotation | molecular_function | 1735 Chromatin immunoprecipitation experiment | fission_yeast_phenotype | 1898 Enzyme assay data | fission_yeast_phenotype | 1917 Inferred from Direct Assay | molecular_function | 1953 Inferred from Sequence Orthology | biological_process | 1978 Other | fission_yeast_phenotype | 1985 Flow cytometry data | fission_yeast_phenotype | 2167 gel electrophoresis evidence | fission_yeast_phenotype | 2477 reporter gene assay evidence | fission_yeast_phenotype | 2846 Inferred from Direct Assay | PSI-MOD | 3109 mass spectrometry evidence | PSI-MOD | 3202 Inferred from Physical Interaction | molecular_function | 3238 expression microarray evidence | PomGeneExRNA | 3517 Inferred from Mutant Phenotype | biological_process | 3738 transcript expression level evidence | fission_yeast_phenotype | 3813 RNA-sequencing evidence | PomGeneExRNA | 3822 Western blot assay | fission_yeast_phenotype | 4364 Inferred from Direct Assay | cellular_component | 5456 Inferred from high throughput direct assay | cellular_component | 6853 experimental evidence | PSI-MOD | 8141 mass spectrometry evidence | gene_ex | 13682 experimental evidence | gene_ex | 20210 cell growth assay evidence | fission_yeast_phenotype | 34459 tryptic phosphopeptide mapping assay evidence used in automatic assertion | PSI-MOD | 34916 Microscopy | fission_yeast_phenotype | 37293 (127 rows) annotation counts by evidence code and cv type, sorted by cv evidence code: ev_code | cv_name | count ----------------------------------------------------------------------------------+--------------------------+------- Chromatin immunoprecipitation experiment | fission_yeast_phenotype | 1898 Chromatography evidence | fission_yeast_phenotype | 69 Co-immunoprecipitation experiment | fission_yeast_phenotype | 967 Electrophoretic mobility shift assay data | fission_yeast_phenotype | 193 Enzyme assay data | fission_yeast_phenotype | 1917 Epitope-tagged protein immunolocalization experiment data | fission_yeast_phenotype | 47 Flow cytometry data | fission_yeast_phenotype | 2167 Immunolocalization experiment data | fission_yeast_phenotype | 23 Inferred by Curator | biological_process | 1197 Inferred by Curator | cellular_component | 543 Inferred by Curator | molecular_function | 137 Inferred from Biological aspect of Ancestor | biological_process | 1313 Inferred from Biological aspect of Ancestor | cellular_component | 982 Inferred from Biological aspect of Ancestor | molecular_function | 846 Inferred from Direct Assay | PSI-MOD | 3109 Inferred from Direct Assay | biological_process | 700 Inferred from Direct Assay | cellular_component | 5456 Inferred from Direct Assay | misc | 1 Inferred from Direct Assay | molecular_function | 1953 Inferred from Direct Assay | sequence | 2 Inferred from Direct Assay | subunit_composition | 4 Inferred from Electronic Annotation | biological_process | 519 Inferred from Electronic Annotation | cellular_component | 910 Inferred from Electronic Annotation | molecular_function | 1735 Inferred from Experiment | biological_process | 366 Inferred from Experiment | cellular_component | 312 Inferred from Experiment | molecular_function | 583 Inferred from Expression Pattern | biological_process | 19 Inferred from Genetic Interaction | biological_process | 584 Inferred from Genetic Interaction | cellular_component | 46 Inferred from Genetic Interaction | molecular_function | 124 Inferred from Key Residues | molecular_function | 1 Inferred from Mutant Phenotype | PSI-MOD | 1 Inferred from Mutant Phenotype | biological_process | 3738 Inferred from Mutant Phenotype | cellular_component | 58 Inferred from Mutant Phenotype | misc | 4 Inferred from Mutant Phenotype | molecular_function | 847 Inferred from Mutant Phenotype | sequence | 10 Inferred from Physical Interaction | biological_process | 71 Inferred from Physical Interaction | cellular_component | 327 Inferred from Physical Interaction | misc | 2 Inferred from Physical Interaction | molecular_function | 3238 Inferred from Sequence Model | PSI-MOD | 2 Inferred from Sequence Model | biological_process | 169 Inferred from Sequence Model | cellular_component | 94 Inferred from Sequence Model | molecular_function | 1180 Inferred from Sequence Orthology | biological_process | 1978 Inferred from Sequence Orthology | cellular_component | 1482 Inferred from Sequence Orthology | molecular_function | 1329 Inferred from Sequence or Structural Similarity | PSI-MOD | 101 Inferred from Sequence or Structural Similarity | PomBase family or domain | 5 Inferred from Sequence or Structural Similarity | biological_process | 535 Inferred from Sequence or Structural Similarity | cellular_component | 390 Inferred from Sequence or Structural Similarity | genome_org | 13 Inferred from Sequence or Structural Similarity | m_f_g | 42 Inferred from Sequence or Structural Similarity | misc | 1 Inferred from Sequence or Structural Similarity | molecular_function | 463 Inferred from Sequence or Structural Similarity | sequence | 354 Inferred from Sequence or Structural Similarity | subunit_composition | 1 Inferred from Sequence or Structural Similarity | warning | 100 Inferred from high throughput direct assay | cellular_component | 6853 Inferred from high throughput direct assay | molecular_function | 17 Inferred from high throughput mutant phenotype | molecular_function | 1535 Microscopy | PomGeneExProt | 6 Microscopy | fission_yeast_phenotype | 37293 Non-traceable Author Statement | biological_process | 364 Non-traceable Author Statement | cellular_component | 177 Non-traceable Author Statement | complementation | 1 Non-traceable Author Statement | molecular_function | 160 Northern assay evidence | PomGeneExRNA | 109 Northern assay evidence | fission_yeast_phenotype | 118 Other | fission_yeast_phenotype | 1985 Other direct assay | fission_yeast_phenotype | 9 Particle size and count assay | fission_yeast_phenotype | 30 Plasmid maintenance assay evidence | fission_yeast_phenotype | 80 RNA protection assay evidence | PomGeneExRNA | 58 RNA-sequencing evidence | PomGeneExRNA | 3822 Substance quantification | fission_yeast_phenotype | 1140 Traceable Author Statement | PSI-MOD | 1 Traceable Author Statement | PomBase family or domain | 5 Traceable Author Statement | biological_process | 138 Traceable Author Statement | cellular_component | 101 Traceable Author Statement | molecular_function | 138 Traceable Author Statement | sequence | 2 Western blot assay | fission_yeast_phenotype | 4364 Western blot evidence | PomGeneExProt | 64 cell growth assay evidence | fission_yeast_phenotype | 34459 competitive growth assay evidence | fission_yeast_phenotype | 1194 differential hybridization evidence | PSI-MOD | 1287 differential hybridization evidence | PomGeneExRNA | 1 experimental evidence | PSI-MOD | 8141 experimental evidence | PomGeneExProt | 1 experimental evidence | PomGeneExRNA | 198 experimental evidence | gene_ex | 20210 experimental phenotypic evidence | fission_yeast_phenotype | 493 expression microarray evidence | PomGeneExRNA | 3517 fusion protein localization evidence | PomGeneExProt | 11 gel electrophoresis evidence | fission_yeast_phenotype | 2477 high throughput nucleotide sequencing assay evidence | fission_yeast_phenotype | 206 immunofluorescence evidence | PomGeneExProt | 6 in situ hybridization assay evidence | gene_ex | 14 in situ hybridization evidence used in manual assertion | PomGeneExRNA | 5 mass spectrometry evidence | PSI-MOD | 3202 mass spectrometry evidence | PomGeneExProt | 614 mass spectrometry evidence | gene_ex | 13682 microscopy evidence used in manual assertion | fission_yeast_phenotype | 659 northern assay evidence used in manual assertion | PomGeneExProt | 5 northern assay evidence used in manual assertion | PomGeneExRNA | 796 protein expression level evidence based on western blot used in manual assertion | gene_ex | 2 quantitative PCR | PomGeneExProt | 3 quantitative PCR | PomGeneExRNA | 111 quantitative PCR | fission_yeast_phenotype | 845 quantitative polymerase chain reaction evidence used in manual assertion | PomGeneExRNA | 8 reporter gene assay evidence | PomGeneExProt | 136 reporter gene assay evidence | PomGeneExRNA | 12 reporter gene assay evidence | fission_yeast_phenotype | 2846 reverse transcription polymerase chain reaction transcription evidence | PomGeneExRNA | 60 ribosome profiling evidence | PomGeneExRD | 737 sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | PomGeneExProt | 2 sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | fission_yeast_phenotype | 22 transcript expression level evidence | PomGeneExRNA | 16 transcript expression level evidence | fission_yeast_phenotype | 3813 tryptic phosphopeptide mapping assay evidence used in automatic assertion | PSI-MOD | 34916 tryptic phosphopeptide mapping assay evidence used in automatic assertion | fission_yeast_phenotype | 149 western blot evidence used in manual assertion | PomGeneExProt | 437 western blot evidence used in manual assertion | PomGeneExRNA | 13 western blot evidence used in manual assertion | fission_yeast_phenotype | 147 (127 rows) total: count -------- 353212 (1 row) counts of annotation from Canto, by type: count | cv_name -------+------------------------------------ 49 | PomGeneExProt 157 | PomGeneExRNA 2180 | PSI-MOD 4327 | biological_process 4398 | molecular_function 5094 | cellular_component 33585 | PomBase annotation extension terms 65853 | fission_yeast_phenotype (8 rows) total ------- 82058 (1 row)