counts of all annotation by type:
count | cv_name
-------+--------------------------------------
6 | external_link
22 | ex_tools
27 | cat_act
28 | pathway
90 | m_f_g
191 | subunit_composition
227 | genome_org
419 | misc
452 | complementation
737 | PomGeneExRD
823 | EC numbers
959 | sequence
976 | name_description
1292 | PomGeneExProt
1806 | warning
1866 | PomBase family or domain
4056 | kegg_pombe_pathway
4539 | mondo
5142 | PomBase gene characterisation status
8742 | PomGeneExRNA
11761 | biological_process
14348 | molecular_function
17735 | cellular_component
25164 | species_dist
33908 | gene_ex
60234 | PSI-MOD
67656 | PomBase gene products
99847 | fission_yeast_phenotype
(28 rows)
annotation counts by evidence code and cv type, sorted by cv name:
ev_code | cv_name | count
----------------------------------------------------------------------------------+--------------------------+-------
Inferred from Direct Assay | PSI-MOD | 3121
Inferred from Mutant Phenotype | PSI-MOD | 1
Inferred from Sequence Model | PSI-MOD | 2
Inferred from Sequence or Structural Similarity | PSI-MOD | 101
Traceable Author Statement | PSI-MOD | 1
differential hybridization evidence | PSI-MOD | 1287
experimental evidence | PSI-MOD | 8141
mass spectrometry evidence | PSI-MOD | 3203
tryptic phosphopeptide mapping assay evidence used in automatic assertion | PSI-MOD | 44320
Inferred from Sequence or Structural Similarity | PomBase family or domain | 5
Traceable Author Statement | PomBase family or domain | 5
Microscopy | PomGeneExProt | 6
Western blot evidence | PomGeneExProt | 65
experimental evidence | PomGeneExProt | 1
fusion protein localization evidence | PomGeneExProt | 11
immunofluorescence evidence | PomGeneExProt | 6
mass spectrometry evidence | PomGeneExProt | 614
northern assay evidence used in manual assertion | PomGeneExProt | 5
quantitative PCR | PomGeneExProt | 3
reporter gene assay evidence | PomGeneExProt | 136
sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | PomGeneExProt | 2
western blot evidence used in manual assertion | PomGeneExProt | 437
ribosome profiling evidence | PomGeneExRD | 737
Northern assay evidence | PomGeneExRNA | 110
RNA protection assay evidence | PomGeneExRNA | 58
RNA-sequencing evidence | PomGeneExRNA | 3820
differential hybridization evidence | PomGeneExRNA | 1
experimental evidence | PomGeneExRNA | 198
expression microarray evidence | PomGeneExRNA | 3517
in situ hybridization evidence used in manual assertion | PomGeneExRNA | 5
northern assay evidence used in manual assertion | PomGeneExRNA | 796
quantitative PCR | PomGeneExRNA | 112
quantitative polymerase chain reaction evidence used in manual assertion | PomGeneExRNA | 8
reporter gene assay evidence | PomGeneExRNA | 12
reverse transcription polymerase chain reaction transcription evidence | PomGeneExRNA | 60
transcript expression level evidence | PomGeneExRNA | 16
western blot evidence used in manual assertion | PomGeneExRNA | 13
Inferred by Curator | biological_process | 1173
Inferred from Biological aspect of Ancestor | biological_process | 1337
Inferred from Direct Assay | biological_process | 699
Inferred from Electronic Annotation | biological_process | 605
Inferred from Experiment | biological_process | 369
Inferred from Expression Pattern | biological_process | 19
Inferred from Genetic Interaction | biological_process | 576
Inferred from Mutant Phenotype | biological_process | 3735
Inferred from Physical Interaction | biological_process | 71
Inferred from Sequence Model | biological_process | 149
Inferred from Sequence Orthology | biological_process | 1972
Inferred from Sequence or Structural Similarity | biological_process | 538
Non-traceable Author Statement | biological_process | 379
Traceable Author Statement | biological_process | 139
Inferred by Curator | cellular_component | 546
Inferred from Biological aspect of Ancestor | cellular_component | 987
Inferred from Direct Assay | cellular_component | 5442
Inferred from Electronic Annotation | cellular_component | 937
Inferred from Experiment | cellular_component | 316
Inferred from Genetic Interaction | cellular_component | 46
Inferred from Mutant Phenotype | cellular_component | 58
Inferred from Physical Interaction | cellular_component | 327
Inferred from Sequence Model | cellular_component | 94
Inferred from Sequence Orthology | cellular_component | 1479
Inferred from Sequence or Structural Similarity | cellular_component | 392
Inferred from high throughput direct assay | cellular_component | 6835
Non-traceable Author Statement | cellular_component | 174
Traceable Author Statement | cellular_component | 102
Non-traceable Author Statement | complementation | 1
Chromatin immunoprecipitation experiment | fission_yeast_phenotype | 1916
Chromatography evidence | fission_yeast_phenotype | 69
Co-immunoprecipitation experiment | fission_yeast_phenotype | 970
Electrophoretic mobility shift assay data | fission_yeast_phenotype | 193
Enzyme assay data | fission_yeast_phenotype | 1920
Epitope-tagged protein immunolocalization experiment data | fission_yeast_phenotype | 47
Flow cytometry data | fission_yeast_phenotype | 2165
Immunolocalization experiment data | fission_yeast_phenotype | 23
Microscopy | fission_yeast_phenotype | 37266
Northern assay evidence | fission_yeast_phenotype | 118
Other | fission_yeast_phenotype | 1994
Other direct assay | fission_yeast_phenotype | 9
Particle size and count assay | fission_yeast_phenotype | 30
Plasmid maintenance assay evidence | fission_yeast_phenotype | 80
Substance quantification evidence | fission_yeast_phenotype | 1136
Western blot assay | fission_yeast_phenotype | 4386
cell growth assay evidence | fission_yeast_phenotype | 34648
competitive growth assay evidence | fission_yeast_phenotype | 1194
experimental phenotypic evidence | fission_yeast_phenotype | 493
gel electrophoresis evidence | fission_yeast_phenotype | 2480
high throughput nucleotide sequencing assay evidence | fission_yeast_phenotype | 206
microscopy evidence used in manual assertion | fission_yeast_phenotype | 659
quantitative PCR | fission_yeast_phenotype | 863
reporter gene assay evidence | fission_yeast_phenotype | 2851
sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | fission_yeast_phenotype | 22
transcript expression level evidence | fission_yeast_phenotype | 3813
tryptic phosphopeptide mapping assay evidence used in automatic assertion | fission_yeast_phenotype | 149
western blot evidence used in manual assertion | fission_yeast_phenotype | 147
experimental evidence | gene_ex | 20210
in situ hybridization assay evidence | gene_ex | 14
mass spectrometry evidence | gene_ex | 13682
protein expression level evidence based on western blot used in manual assertion | gene_ex | 2
Inferred from Sequence or Structural Similarity | genome_org | 13
Inferred from Sequence or Structural Similarity | m_f_g | 42
Inferred from Direct Assay | misc | 1
Inferred from Mutant Phenotype | misc | 4
Inferred from Physical Interaction | misc | 2
Inferred from Sequence or Structural Similarity | misc | 1
Inferred by Curator | molecular_function | 136
Inferred from Biological aspect of Ancestor | molecular_function | 868
Inferred from Direct Assay | molecular_function | 1955
Inferred from Electronic Annotation | molecular_function | 1748
Inferred from Experiment | molecular_function | 589
Inferred from Genetic Interaction | molecular_function | 123
Inferred from Key Residues | molecular_function | 1
Inferred from Mutant Phenotype | molecular_function | 846
Inferred from Physical Interaction | molecular_function | 3239
Inferred from Sequence Model | molecular_function | 1176
Inferred from Sequence Orthology | molecular_function | 1342
Inferred from Sequence or Structural Similarity | molecular_function | 479
Inferred from high throughput direct assay | molecular_function | 17
Inferred from high throughput mutant phenotype | molecular_function | 1535
Non-traceable Author Statement | molecular_function | 157
Traceable Author Statement | molecular_function | 137
Inferred from Direct Assay | sequence | 2
Inferred from Mutant Phenotype | sequence | 10
Inferred from Sequence or Structural Similarity | sequence | 354
Traceable Author Statement | sequence | 2
Inferred from Direct Assay | subunit_composition | 4
Inferred from Sequence or Structural Similarity | subunit_composition | 1
Inferred from Sequence or Structural Similarity | warning | 100
(127 rows)
annotation counts by evidence code and cv type, sorted by count:
ev_code | cv_name | count
----------------------------------------------------------------------------------+--------------------------+-------
Inferred from Mutant Phenotype | PSI-MOD | 1
Inferred from Direct Assay | misc | 1
Inferred from Sequence or Structural Similarity | subunit_composition | 1
Traceable Author Statement | PSI-MOD | 1
Inferred from Sequence or Structural Similarity | misc | 1
differential hybridization evidence | PomGeneExRNA | 1
experimental evidence | PomGeneExProt | 1
Inferred from Key Residues | molecular_function | 1
Non-traceable Author Statement | complementation | 1
Traceable Author Statement | sequence | 2
Inferred from Direct Assay | sequence | 2
sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | PomGeneExProt | 2
protein expression level evidence based on western blot used in manual assertion | gene_ex | 2
Inferred from Sequence Model | PSI-MOD | 2
Inferred from Physical Interaction | misc | 2
quantitative PCR | PomGeneExProt | 3
Inferred from Mutant Phenotype | misc | 4
Inferred from Direct Assay | subunit_composition | 4
in situ hybridization evidence used in manual assertion | PomGeneExRNA | 5
Inferred from Sequence or Structural Similarity | PomBase family or domain | 5
northern assay evidence used in manual assertion | PomGeneExProt | 5
Traceable Author Statement | PomBase family or domain | 5
Microscopy | PomGeneExProt | 6
immunofluorescence evidence | PomGeneExProt | 6
quantitative polymerase chain reaction evidence used in manual assertion | PomGeneExRNA | 8
Other direct assay | fission_yeast_phenotype | 9
Inferred from Mutant Phenotype | sequence | 10
fusion protein localization evidence | PomGeneExProt | 11
reporter gene assay evidence | PomGeneExRNA | 12
Inferred from Sequence or Structural Similarity | genome_org | 13
western blot evidence used in manual assertion | PomGeneExRNA | 13
in situ hybridization assay evidence | gene_ex | 14
transcript expression level evidence | PomGeneExRNA | 16
Inferred from high throughput direct assay | molecular_function | 17
Inferred from Expression Pattern | biological_process | 19
sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | fission_yeast_phenotype | 22
Immunolocalization experiment data | fission_yeast_phenotype | 23
Particle size and count assay | fission_yeast_phenotype | 30
Inferred from Sequence or Structural Similarity | m_f_g | 42
Inferred from Genetic Interaction | cellular_component | 46
Epitope-tagged protein immunolocalization experiment data | fission_yeast_phenotype | 47
RNA protection assay evidence | PomGeneExRNA | 58
Inferred from Mutant Phenotype | cellular_component | 58
reverse transcription polymerase chain reaction transcription evidence | PomGeneExRNA | 60
Western blot evidence | PomGeneExProt | 65
Chromatography evidence | fission_yeast_phenotype | 69
Inferred from Physical Interaction | biological_process | 71
Plasmid maintenance assay evidence | fission_yeast_phenotype | 80
Inferred from Sequence Model | cellular_component | 94
Inferred from Sequence or Structural Similarity | warning | 100
Inferred from Sequence or Structural Similarity | PSI-MOD | 101
Traceable Author Statement | cellular_component | 102
Northern assay evidence | PomGeneExRNA | 110
quantitative PCR | PomGeneExRNA | 112
Northern assay evidence | fission_yeast_phenotype | 118
Inferred from Genetic Interaction | molecular_function | 123
reporter gene assay evidence | PomGeneExProt | 136
Inferred by Curator | molecular_function | 136
Traceable Author Statement | molecular_function | 137
Traceable Author Statement | biological_process | 139
western blot evidence used in manual assertion | fission_yeast_phenotype | 147
Inferred from Sequence Model | biological_process | 149
tryptic phosphopeptide mapping assay evidence used in automatic assertion | fission_yeast_phenotype | 149
Non-traceable Author Statement | molecular_function | 157
Non-traceable Author Statement | cellular_component | 174
Electrophoretic mobility shift assay data | fission_yeast_phenotype | 193
experimental evidence | PomGeneExRNA | 198
high throughput nucleotide sequencing assay evidence | fission_yeast_phenotype | 206
Inferred from Experiment | cellular_component | 316
Inferred from Physical Interaction | cellular_component | 327
Inferred from Sequence or Structural Similarity | sequence | 354
Inferred from Experiment | biological_process | 369
Non-traceable Author Statement | biological_process | 379
Inferred from Sequence or Structural Similarity | cellular_component | 392
western blot evidence used in manual assertion | PomGeneExProt | 437
Inferred from Sequence or Structural Similarity | molecular_function | 479
experimental phenotypic evidence | fission_yeast_phenotype | 493
Inferred from Sequence or Structural Similarity | biological_process | 538
Inferred by Curator | cellular_component | 546
Inferred from Genetic Interaction | biological_process | 576
Inferred from Experiment | molecular_function | 589
Inferred from Electronic Annotation | biological_process | 605
mass spectrometry evidence | PomGeneExProt | 614
microscopy evidence used in manual assertion | fission_yeast_phenotype | 659
Inferred from Direct Assay | biological_process | 699
ribosome profiling evidence | PomGeneExRD | 737
northern assay evidence used in manual assertion | PomGeneExRNA | 796
Inferred from Mutant Phenotype | molecular_function | 846
quantitative PCR | fission_yeast_phenotype | 863
Inferred from Biological aspect of Ancestor | molecular_function | 868
Inferred from Electronic Annotation | cellular_component | 937
Co-immunoprecipitation experiment | fission_yeast_phenotype | 970
Inferred from Biological aspect of Ancestor | cellular_component | 987
Substance quantification evidence | fission_yeast_phenotype | 1136
Inferred by Curator | biological_process | 1173
Inferred from Sequence Model | molecular_function | 1176
competitive growth assay evidence | fission_yeast_phenotype | 1194
differential hybridization evidence | PSI-MOD | 1287
Inferred from Biological aspect of Ancestor | biological_process | 1337
Inferred from Sequence Orthology | molecular_function | 1342
Inferred from Sequence Orthology | cellular_component | 1479
Inferred from high throughput mutant phenotype | molecular_function | 1535
Inferred from Electronic Annotation | molecular_function | 1748
Chromatin immunoprecipitation experiment | fission_yeast_phenotype | 1916
Enzyme assay data | fission_yeast_phenotype | 1920
Inferred from Direct Assay | molecular_function | 1955
Inferred from Sequence Orthology | biological_process | 1972
Other | fission_yeast_phenotype | 1994
Flow cytometry data | fission_yeast_phenotype | 2165
gel electrophoresis evidence | fission_yeast_phenotype | 2480
reporter gene assay evidence | fission_yeast_phenotype | 2851
Inferred from Direct Assay | PSI-MOD | 3121
mass spectrometry evidence | PSI-MOD | 3203
Inferred from Physical Interaction | molecular_function | 3239
expression microarray evidence | PomGeneExRNA | 3517
Inferred from Mutant Phenotype | biological_process | 3735
transcript expression level evidence | fission_yeast_phenotype | 3813
RNA-sequencing evidence | PomGeneExRNA | 3820
Western blot assay | fission_yeast_phenotype | 4386
Inferred from Direct Assay | cellular_component | 5442
Inferred from high throughput direct assay | cellular_component | 6835
experimental evidence | PSI-MOD | 8141
mass spectrometry evidence | gene_ex | 13682
experimental evidence | gene_ex | 20210
cell growth assay evidence | fission_yeast_phenotype | 34648
Microscopy | fission_yeast_phenotype | 37266
tryptic phosphopeptide mapping assay evidence used in automatic assertion | PSI-MOD | 44320
(127 rows)
annotation counts by evidence code and cv type, sorted by cv evidence code:
ev_code | cv_name | count
----------------------------------------------------------------------------------+--------------------------+-------
Chromatin immunoprecipitation experiment | fission_yeast_phenotype | 1916
Chromatography evidence | fission_yeast_phenotype | 69
Co-immunoprecipitation experiment | fission_yeast_phenotype | 970
Electrophoretic mobility shift assay data | fission_yeast_phenotype | 193
Enzyme assay data | fission_yeast_phenotype | 1920
Epitope-tagged protein immunolocalization experiment data | fission_yeast_phenotype | 47
Flow cytometry data | fission_yeast_phenotype | 2165
Immunolocalization experiment data | fission_yeast_phenotype | 23
Inferred by Curator | biological_process | 1173
Inferred by Curator | cellular_component | 546
Inferred by Curator | molecular_function | 136
Inferred from Biological aspect of Ancestor | biological_process | 1337
Inferred from Biological aspect of Ancestor | cellular_component | 987
Inferred from Biological aspect of Ancestor | molecular_function | 868
Inferred from Direct Assay | PSI-MOD | 3121
Inferred from Direct Assay | biological_process | 699
Inferred from Direct Assay | cellular_component | 5442
Inferred from Direct Assay | misc | 1
Inferred from Direct Assay | molecular_function | 1955
Inferred from Direct Assay | sequence | 2
Inferred from Direct Assay | subunit_composition | 4
Inferred from Electronic Annotation | biological_process | 605
Inferred from Electronic Annotation | cellular_component | 937
Inferred from Electronic Annotation | molecular_function | 1748
Inferred from Experiment | biological_process | 369
Inferred from Experiment | cellular_component | 316
Inferred from Experiment | molecular_function | 589
Inferred from Expression Pattern | biological_process | 19
Inferred from Genetic Interaction | biological_process | 576
Inferred from Genetic Interaction | cellular_component | 46
Inferred from Genetic Interaction | molecular_function | 123
Inferred from Key Residues | molecular_function | 1
Inferred from Mutant Phenotype | PSI-MOD | 1
Inferred from Mutant Phenotype | biological_process | 3735
Inferred from Mutant Phenotype | cellular_component | 58
Inferred from Mutant Phenotype | misc | 4
Inferred from Mutant Phenotype | molecular_function | 846
Inferred from Mutant Phenotype | sequence | 10
Inferred from Physical Interaction | biological_process | 71
Inferred from Physical Interaction | cellular_component | 327
Inferred from Physical Interaction | misc | 2
Inferred from Physical Interaction | molecular_function | 3239
Inferred from Sequence Model | PSI-MOD | 2
Inferred from Sequence Model | biological_process | 149
Inferred from Sequence Model | cellular_component | 94
Inferred from Sequence Model | molecular_function | 1176
Inferred from Sequence Orthology | biological_process | 1972
Inferred from Sequence Orthology | cellular_component | 1479
Inferred from Sequence Orthology | molecular_function | 1342
Inferred from Sequence or Structural Similarity | PSI-MOD | 101
Inferred from Sequence or Structural Similarity | PomBase family or domain | 5
Inferred from Sequence or Structural Similarity | biological_process | 538
Inferred from Sequence or Structural Similarity | cellular_component | 392
Inferred from Sequence or Structural Similarity | genome_org | 13
Inferred from Sequence or Structural Similarity | m_f_g | 42
Inferred from Sequence or Structural Similarity | misc | 1
Inferred from Sequence or Structural Similarity | molecular_function | 479
Inferred from Sequence or Structural Similarity | sequence | 354
Inferred from Sequence or Structural Similarity | subunit_composition | 1
Inferred from Sequence or Structural Similarity | warning | 100
Inferred from high throughput direct assay | cellular_component | 6835
Inferred from high throughput direct assay | molecular_function | 17
Inferred from high throughput mutant phenotype | molecular_function | 1535
Microscopy | PomGeneExProt | 6
Microscopy | fission_yeast_phenotype | 37266
Non-traceable Author Statement | biological_process | 379
Non-traceable Author Statement | cellular_component | 174
Non-traceable Author Statement | complementation | 1
Non-traceable Author Statement | molecular_function | 157
Northern assay evidence | PomGeneExRNA | 110
Northern assay evidence | fission_yeast_phenotype | 118
Other | fission_yeast_phenotype | 1994
Other direct assay | fission_yeast_phenotype | 9
Particle size and count assay | fission_yeast_phenotype | 30
Plasmid maintenance assay evidence | fission_yeast_phenotype | 80
RNA protection assay evidence | PomGeneExRNA | 58
RNA-sequencing evidence | PomGeneExRNA | 3820
Substance quantification evidence | fission_yeast_phenotype | 1136
Traceable Author Statement | PSI-MOD | 1
Traceable Author Statement | PomBase family or domain | 5
Traceable Author Statement | biological_process | 139
Traceable Author Statement | cellular_component | 102
Traceable Author Statement | molecular_function | 137
Traceable Author Statement | sequence | 2
Western blot assay | fission_yeast_phenotype | 4386
Western blot evidence | PomGeneExProt | 65
cell growth assay evidence | fission_yeast_phenotype | 34648
competitive growth assay evidence | fission_yeast_phenotype | 1194
differential hybridization evidence | PSI-MOD | 1287
differential hybridization evidence | PomGeneExRNA | 1
experimental evidence | PSI-MOD | 8141
experimental evidence | PomGeneExProt | 1
experimental evidence | PomGeneExRNA | 198
experimental evidence | gene_ex | 20210
experimental phenotypic evidence | fission_yeast_phenotype | 493
expression microarray evidence | PomGeneExRNA | 3517
fusion protein localization evidence | PomGeneExProt | 11
gel electrophoresis evidence | fission_yeast_phenotype | 2480
high throughput nucleotide sequencing assay evidence | fission_yeast_phenotype | 206
immunofluorescence evidence | PomGeneExProt | 6
in situ hybridization assay evidence | gene_ex | 14
in situ hybridization evidence used in manual assertion | PomGeneExRNA | 5
mass spectrometry evidence | PSI-MOD | 3203
mass spectrometry evidence | PomGeneExProt | 614
mass spectrometry evidence | gene_ex | 13682
microscopy evidence used in manual assertion | fission_yeast_phenotype | 659
northern assay evidence used in manual assertion | PomGeneExProt | 5
northern assay evidence used in manual assertion | PomGeneExRNA | 796
protein expression level evidence based on western blot used in manual assertion | gene_ex | 2
quantitative PCR | PomGeneExProt | 3
quantitative PCR | PomGeneExRNA | 112
quantitative PCR | fission_yeast_phenotype | 863
quantitative polymerase chain reaction evidence used in manual assertion | PomGeneExRNA | 8
reporter gene assay evidence | PomGeneExProt | 136
reporter gene assay evidence | PomGeneExRNA | 12
reporter gene assay evidence | fission_yeast_phenotype | 2851
reverse transcription polymerase chain reaction transcription evidence | PomGeneExRNA | 60
ribosome profiling evidence | PomGeneExRD | 737
sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | PomGeneExProt | 2
sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | fission_yeast_phenotype | 22
transcript expression level evidence | PomGeneExRNA | 16
transcript expression level evidence | fission_yeast_phenotype | 3813
tryptic phosphopeptide mapping assay evidence used in automatic assertion | PSI-MOD | 44320
tryptic phosphopeptide mapping assay evidence used in automatic assertion | fission_yeast_phenotype | 149
western blot evidence used in manual assertion | PomGeneExProt | 437
western blot evidence used in manual assertion | PomGeneExRNA | 13
western blot evidence used in manual assertion | fission_yeast_phenotype | 147
(127 rows)
total:
count
--------
363053
(1 row)
counts of annotation from Canto, by type:
count | cv_name
-------+------------------------------------
50 | PomGeneExProt
159 | PomGeneExRNA
2192 | PSI-MOD
4331 | biological_process
4415 | molecular_function
5088 | cellular_component
33772 | PomBase annotation extension terms
66242 | fission_yeast_phenotype
(8 rows)
total
-------
82477
(1 row)