counts of all annotation by type: count | cv_name --------+-------------------------------------- 6 | external_link 22 | ex_tools 27 | cat_act 28 | pathway 90 | m_f_g 191 | subunit_composition 227 | genome_org 419 | misc 456 | complementation 735 | PomGeneExRD 822 | EC numbers 959 | sequence 977 | name_description 1292 | PomGeneExProt 1813 | warning 1868 | PomBase family or domain 4061 | kegg_pombe_pathway 4566 | mondo 5142 | PomBase gene characterisation status 8740 | PomGeneExRNA 11532 | biological_process 14327 | molecular_function 17754 | cellular_component 25190 | species_dist 33908 | gene_ex 60230 | PSI-MOD 67670 | PomBase gene products 100149 | fission_yeast_phenotype (28 rows) annotation counts by evidence code and cv type, sorted by cv name: ev_code | cv_name | count ----------------------------------------------------------------------------------+--------------------------+------- Inferred from Direct Assay | PSI-MOD | 3117 Inferred from Mutant Phenotype | PSI-MOD | 1 Inferred from Sequence Model | PSI-MOD | 2 Inferred from Sequence or Structural Similarity | PSI-MOD | 101 Traceable Author Statement | PSI-MOD | 1 differential hybridization evidence | PSI-MOD | 1287 experimental evidence | PSI-MOD | 8141 mass spectrometry evidence | PSI-MOD | 3203 tryptic phosphopeptide mapping assay evidence used in automatic assertion | PSI-MOD | 44320 Inferred from Sequence or Structural Similarity | PomBase family or domain | 5 Traceable Author Statement | PomBase family or domain | 5 Microscopy | PomGeneExProt | 6 Western blot evidence | PomGeneExProt | 65 experimental evidence | PomGeneExProt | 1 fusion protein localization evidence | PomGeneExProt | 11 immunofluorescence evidence | PomGeneExProt | 6 mass spectrometry evidence | PomGeneExProt | 614 northern assay evidence used in manual assertion | PomGeneExProt | 5 quantitative PCR | PomGeneExProt | 3 reporter gene assay evidence | PomGeneExProt | 136 sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | PomGeneExProt | 2 western blot evidence used in manual assertion | PomGeneExProt | 437 ribosome profiling evidence | PomGeneExRD | 735 Northern assay evidence | PomGeneExRNA | 112 RNA protection assay evidence | PomGeneExRNA | 58 RNA-sequencing evidence | PomGeneExRNA | 3816 differential hybridization evidence | PomGeneExRNA | 1 experimental evidence | PomGeneExRNA | 198 expression microarray evidence | PomGeneExRNA | 3517 in situ hybridization evidence used in manual assertion | PomGeneExRNA | 5 northern assay evidence used in manual assertion | PomGeneExRNA | 796 quantitative PCR | PomGeneExRNA | 112 quantitative polymerase chain reaction evidence used in manual assertion | PomGeneExRNA | 8 reporter gene assay evidence | PomGeneExRNA | 12 reverse transcription polymerase chain reaction transcription evidence | PomGeneExRNA | 60 transcript expression level evidence | PomGeneExRNA | 16 western blot evidence used in manual assertion | PomGeneExRNA | 13 Inferred by Curator | biological_process | 1079 Inferred from Biological aspect of Ancestor | biological_process | 1273 Inferred from Direct Assay | biological_process | 683 Inferred from Electronic Annotation | biological_process | 584 Inferred from Experiment | biological_process | 369 Inferred from Expression Pattern | biological_process | 20 Inferred from Genetic Interaction | biological_process | 577 Inferred from Mutant Phenotype | biological_process | 3720 Inferred from Physical Interaction | biological_process | 72 Inferred from Sequence Model | biological_process | 147 Inferred from Sequence Orthology | biological_process | 1964 Inferred from Sequence or Structural Similarity | biological_process | 531 Non-traceable Author Statement | biological_process | 373 Traceable Author Statement | biological_process | 140 Inferred by Curator | cellular_component | 548 Inferred from Biological aspect of Ancestor | cellular_component | 965 Inferred from Direct Assay | cellular_component | 5466 Inferred from Electronic Annotation | cellular_component | 940 Inferred from Experiment | cellular_component | 324 Inferred from Genetic Interaction | cellular_component | 46 Inferred from Mutant Phenotype | cellular_component | 58 Inferred from Physical Interaction | cellular_component | 327 Inferred from Sequence Model | cellular_component | 94 Inferred from Sequence Orthology | cellular_component | 1488 Inferred from Sequence or Structural Similarity | cellular_component | 390 Inferred from high throughput direct assay | cellular_component | 6834 Non-traceable Author Statement | cellular_component | 175 Traceable Author Statement | cellular_component | 99 Non-traceable Author Statement | complementation | 1 Chromatin immunoprecipitation experiment | fission_yeast_phenotype | 1916 Chromatography evidence | fission_yeast_phenotype | 69 Co-immunoprecipitation experiment | fission_yeast_phenotype | 972 Electrophoretic mobility shift assay data | fission_yeast_phenotype | 193 Enzyme assay data | fission_yeast_phenotype | 1921 Epitope-tagged protein immunolocalization experiment data | fission_yeast_phenotype | 47 Flow cytometry data | fission_yeast_phenotype | 2165 Immunolocalization experiment data | fission_yeast_phenotype | 23 Microscopy | fission_yeast_phenotype | 37418 Northern assay evidence | fission_yeast_phenotype | 118 Other | fission_yeast_phenotype | 2003 Other direct assay | fission_yeast_phenotype | 9 Particle size and count assay | fission_yeast_phenotype | 30 Plasmid maintenance assay evidence | fission_yeast_phenotype | 80 Substance quantification | fission_yeast_phenotype | 1139 Western blot assay | fission_yeast_phenotype | 4391 cell growth assay evidence | fission_yeast_phenotype | 34770 competitive growth assay evidence | fission_yeast_phenotype | 1194 experimental phenotypic evidence | fission_yeast_phenotype | 493 gel electrophoresis evidence | fission_yeast_phenotype | 2480 high throughput nucleotide sequencing assay evidence | fission_yeast_phenotype | 206 microscopy evidence used in manual assertion | fission_yeast_phenotype | 659 quantitative PCR | fission_yeast_phenotype | 868 reporter gene assay evidence | fission_yeast_phenotype | 2854 sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | fission_yeast_phenotype | 22 transcript expression level evidence | fission_yeast_phenotype | 3813 tryptic phosphopeptide mapping assay evidence used in automatic assertion | fission_yeast_phenotype | 149 western blot evidence used in manual assertion | fission_yeast_phenotype | 147 experimental evidence | gene_ex | 20210 in situ hybridization assay evidence | gene_ex | 14 mass spectrometry evidence | gene_ex | 13682 protein expression level evidence based on western blot used in manual assertion | gene_ex | 2 Inferred from Sequence or Structural Similarity | genome_org | 13 Inferred from Sequence or Structural Similarity | m_f_g | 42 Inferred from Direct Assay | misc | 1 Inferred from Mutant Phenotype | misc | 4 Inferred from Physical Interaction | misc | 2 Inferred from Sequence or Structural Similarity | misc | 1 Inferred by Curator | molecular_function | 136 Inferred from Biological aspect of Ancestor | molecular_function | 851 Inferred from Direct Assay | molecular_function | 1940 Inferred from Electronic Annotation | molecular_function | 1720 Inferred from Experiment | molecular_function | 599 Inferred from Genetic Interaction | molecular_function | 124 Inferred from Key Residues | molecular_function | 1 Inferred from Mutant Phenotype | molecular_function | 848 Inferred from Physical Interaction | molecular_function | 3244 Inferred from Sequence Model | molecular_function | 1176 Inferred from Sequence Orthology | molecular_function | 1346 Inferred from Sequence or Structural Similarity | molecular_function | 478 Inferred from high throughput direct assay | molecular_function | 17 Inferred from high throughput mutant phenotype | molecular_function | 1535 Non-traceable Author Statement | molecular_function | 176 Traceable Author Statement | molecular_function | 136 Inferred from Direct Assay | sequence | 2 Inferred from Mutant Phenotype | sequence | 10 Inferred from Sequence or Structural Similarity | sequence | 354 Traceable Author Statement | sequence | 2 Inferred from Direct Assay | subunit_composition | 4 Inferred from Sequence or Structural Similarity | subunit_composition | 1 Inferred from Sequence or Structural Similarity | warning | 100 (127 rows) annotation counts by evidence code and cv type, sorted by count: ev_code | cv_name | count ----------------------------------------------------------------------------------+--------------------------+------- Inferred from Mutant Phenotype | PSI-MOD | 1 Inferred from Sequence or Structural Similarity | misc | 1 Traceable Author Statement | PSI-MOD | 1 Inferred from Sequence or Structural Similarity | subunit_composition | 1 differential hybridization evidence | PomGeneExRNA | 1 Non-traceable Author Statement | complementation | 1 experimental evidence | PomGeneExProt | 1 Inferred from Key Residues | molecular_function | 1 Inferred from Direct Assay | misc | 1 sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | PomGeneExProt | 2 protein expression level evidence based on western blot used in manual assertion | gene_ex | 2 Inferred from Direct Assay | sequence | 2 Inferred from Physical Interaction | misc | 2 Traceable Author Statement | sequence | 2 Inferred from Sequence Model | PSI-MOD | 2 quantitative PCR | PomGeneExProt | 3 Inferred from Direct Assay | subunit_composition | 4 Inferred from Mutant Phenotype | misc | 4 Inferred from Sequence or Structural Similarity | PomBase family or domain | 5 northern assay evidence used in manual assertion | PomGeneExProt | 5 Traceable Author Statement | PomBase family or domain | 5 in situ hybridization evidence used in manual assertion | PomGeneExRNA | 5 immunofluorescence evidence | PomGeneExProt | 6 Microscopy | PomGeneExProt | 6 quantitative polymerase chain reaction evidence used in manual assertion | PomGeneExRNA | 8 Other direct assay | fission_yeast_phenotype | 9 Inferred from Mutant Phenotype | sequence | 10 fusion protein localization evidence | PomGeneExProt | 11 reporter gene assay evidence | PomGeneExRNA | 12 Inferred from Sequence or Structural Similarity | genome_org | 13 western blot evidence used in manual assertion | PomGeneExRNA | 13 in situ hybridization assay evidence | gene_ex | 14 transcript expression level evidence | PomGeneExRNA | 16 Inferred from high throughput direct assay | molecular_function | 17 Inferred from Expression Pattern | biological_process | 20 sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | fission_yeast_phenotype | 22 Immunolocalization experiment data | fission_yeast_phenotype | 23 Particle size and count assay | fission_yeast_phenotype | 30 Inferred from Sequence or Structural Similarity | m_f_g | 42 Inferred from Genetic Interaction | cellular_component | 46 Epitope-tagged protein immunolocalization experiment data | fission_yeast_phenotype | 47 Inferred from Mutant Phenotype | cellular_component | 58 RNA protection assay evidence | PomGeneExRNA | 58 reverse transcription polymerase chain reaction transcription evidence | PomGeneExRNA | 60 Western blot evidence | PomGeneExProt | 65 Chromatography evidence | fission_yeast_phenotype | 69 Inferred from Physical Interaction | biological_process | 72 Plasmid maintenance assay evidence | fission_yeast_phenotype | 80 Inferred from Sequence Model | cellular_component | 94 Traceable Author Statement | cellular_component | 99 Inferred from Sequence or Structural Similarity | warning | 100 Inferred from Sequence or Structural Similarity | PSI-MOD | 101 Northern assay evidence | PomGeneExRNA | 112 quantitative PCR | PomGeneExRNA | 112 Northern assay evidence | fission_yeast_phenotype | 118 Inferred from Genetic Interaction | molecular_function | 124 Inferred by Curator | molecular_function | 136 Traceable Author Statement | molecular_function | 136 reporter gene assay evidence | PomGeneExProt | 136 Traceable Author Statement | biological_process | 140 western blot evidence used in manual assertion | fission_yeast_phenotype | 147 Inferred from Sequence Model | biological_process | 147 tryptic phosphopeptide mapping assay evidence used in automatic assertion | fission_yeast_phenotype | 149 Non-traceable Author Statement | cellular_component | 175 Non-traceable Author Statement | molecular_function | 176 Electrophoretic mobility shift assay data | fission_yeast_phenotype | 193 experimental evidence | PomGeneExRNA | 198 high throughput nucleotide sequencing assay evidence | fission_yeast_phenotype | 206 Inferred from Experiment | cellular_component | 324 Inferred from Physical Interaction | cellular_component | 327 Inferred from Sequence or Structural Similarity | sequence | 354 Inferred from Experiment | biological_process | 369 Non-traceable Author Statement | biological_process | 373 Inferred from Sequence or Structural Similarity | cellular_component | 390 western blot evidence used in manual assertion | PomGeneExProt | 437 Inferred from Sequence or Structural Similarity | molecular_function | 478 experimental phenotypic evidence | fission_yeast_phenotype | 493 Inferred from Sequence or Structural Similarity | biological_process | 531 Inferred by Curator | cellular_component | 548 Inferred from Genetic Interaction | biological_process | 577 Inferred from Electronic Annotation | biological_process | 584 Inferred from Experiment | molecular_function | 599 mass spectrometry evidence | PomGeneExProt | 614 microscopy evidence used in manual assertion | fission_yeast_phenotype | 659 Inferred from Direct Assay | biological_process | 683 ribosome profiling evidence | PomGeneExRD | 735 northern assay evidence used in manual assertion | PomGeneExRNA | 796 Inferred from Mutant Phenotype | molecular_function | 848 Inferred from Biological aspect of Ancestor | molecular_function | 851 quantitative PCR | fission_yeast_phenotype | 868 Inferred from Electronic Annotation | cellular_component | 940 Inferred from Biological aspect of Ancestor | cellular_component | 965 Co-immunoprecipitation experiment | fission_yeast_phenotype | 972 Inferred by Curator | biological_process | 1079 Substance quantification | fission_yeast_phenotype | 1139 Inferred from Sequence Model | molecular_function | 1176 competitive growth assay evidence | fission_yeast_phenotype | 1194 Inferred from Biological aspect of Ancestor | biological_process | 1273 differential hybridization evidence | PSI-MOD | 1287 Inferred from Sequence Orthology | molecular_function | 1346 Inferred from Sequence Orthology | cellular_component | 1488 Inferred from high throughput mutant phenotype | molecular_function | 1535 Inferred from Electronic Annotation | molecular_function | 1720 Chromatin immunoprecipitation experiment | fission_yeast_phenotype | 1916 Enzyme assay data | fission_yeast_phenotype | 1921 Inferred from Direct Assay | molecular_function | 1940 Inferred from Sequence Orthology | biological_process | 1964 Other | fission_yeast_phenotype | 2003 Flow cytometry data | fission_yeast_phenotype | 2165 gel electrophoresis evidence | fission_yeast_phenotype | 2480 reporter gene assay evidence | fission_yeast_phenotype | 2854 Inferred from Direct Assay | PSI-MOD | 3117 mass spectrometry evidence | PSI-MOD | 3203 Inferred from Physical Interaction | molecular_function | 3244 expression microarray evidence | PomGeneExRNA | 3517 Inferred from Mutant Phenotype | biological_process | 3720 transcript expression level evidence | fission_yeast_phenotype | 3813 RNA-sequencing evidence | PomGeneExRNA | 3816 Western blot assay | fission_yeast_phenotype | 4391 Inferred from Direct Assay | cellular_component | 5466 Inferred from high throughput direct assay | cellular_component | 6834 experimental evidence | PSI-MOD | 8141 mass spectrometry evidence | gene_ex | 13682 experimental evidence | gene_ex | 20210 cell growth assay evidence | fission_yeast_phenotype | 34770 Microscopy | fission_yeast_phenotype | 37418 tryptic phosphopeptide mapping assay evidence used in automatic assertion | PSI-MOD | 44320 (127 rows) annotation counts by evidence code and cv type, sorted by cv evidence code: ev_code | cv_name | count ----------------------------------------------------------------------------------+--------------------------+------- Chromatin immunoprecipitation experiment | fission_yeast_phenotype | 1916 Chromatography evidence | fission_yeast_phenotype | 69 Co-immunoprecipitation experiment | fission_yeast_phenotype | 972 Electrophoretic mobility shift assay data | fission_yeast_phenotype | 193 Enzyme assay data | fission_yeast_phenotype | 1921 Epitope-tagged protein immunolocalization experiment data | fission_yeast_phenotype | 47 Flow cytometry data | fission_yeast_phenotype | 2165 Immunolocalization experiment data | fission_yeast_phenotype | 23 Inferred by Curator | biological_process | 1079 Inferred by Curator | cellular_component | 548 Inferred by Curator | molecular_function | 136 Inferred from Biological aspect of Ancestor | biological_process | 1273 Inferred from Biological aspect of Ancestor | cellular_component | 965 Inferred from Biological aspect of Ancestor | molecular_function | 851 Inferred from Direct Assay | PSI-MOD | 3117 Inferred from Direct Assay | biological_process | 683 Inferred from Direct Assay | cellular_component | 5466 Inferred from Direct Assay | misc | 1 Inferred from Direct Assay | molecular_function | 1940 Inferred from Direct Assay | sequence | 2 Inferred from Direct Assay | subunit_composition | 4 Inferred from Electronic Annotation | biological_process | 584 Inferred from Electronic Annotation | cellular_component | 940 Inferred from Electronic Annotation | molecular_function | 1720 Inferred from Experiment | biological_process | 369 Inferred from Experiment | cellular_component | 324 Inferred from Experiment | molecular_function | 599 Inferred from Expression Pattern | biological_process | 20 Inferred from Genetic Interaction | biological_process | 577 Inferred from Genetic Interaction | cellular_component | 46 Inferred from Genetic Interaction | molecular_function | 124 Inferred from Key Residues | molecular_function | 1 Inferred from Mutant Phenotype | PSI-MOD | 1 Inferred from Mutant Phenotype | biological_process | 3720 Inferred from Mutant Phenotype | cellular_component | 58 Inferred from Mutant Phenotype | misc | 4 Inferred from Mutant Phenotype | molecular_function | 848 Inferred from Mutant Phenotype | sequence | 10 Inferred from Physical Interaction | biological_process | 72 Inferred from Physical Interaction | cellular_component | 327 Inferred from Physical Interaction | misc | 2 Inferred from Physical Interaction | molecular_function | 3244 Inferred from Sequence Model | PSI-MOD | 2 Inferred from Sequence Model | biological_process | 147 Inferred from Sequence Model | cellular_component | 94 Inferred from Sequence Model | molecular_function | 1176 Inferred from Sequence Orthology | biological_process | 1964 Inferred from Sequence Orthology | cellular_component | 1488 Inferred from Sequence Orthology | molecular_function | 1346 Inferred from Sequence or Structural Similarity | PSI-MOD | 101 Inferred from Sequence or Structural Similarity | PomBase family or domain | 5 Inferred from Sequence or Structural Similarity | biological_process | 531 Inferred from Sequence or Structural Similarity | cellular_component | 390 Inferred from Sequence or Structural Similarity | genome_org | 13 Inferred from Sequence or Structural Similarity | m_f_g | 42 Inferred from Sequence or Structural Similarity | misc | 1 Inferred from Sequence or Structural Similarity | molecular_function | 478 Inferred from Sequence or Structural Similarity | sequence | 354 Inferred from Sequence or Structural Similarity | subunit_composition | 1 Inferred from Sequence or Structural Similarity | warning | 100 Inferred from high throughput direct assay | cellular_component | 6834 Inferred from high throughput direct assay | molecular_function | 17 Inferred from high throughput mutant phenotype | molecular_function | 1535 Microscopy | PomGeneExProt | 6 Microscopy | fission_yeast_phenotype | 37418 Non-traceable Author Statement | biological_process | 373 Non-traceable Author Statement | cellular_component | 175 Non-traceable Author Statement | complementation | 1 Non-traceable Author Statement | molecular_function | 176 Northern assay evidence | PomGeneExRNA | 112 Northern assay evidence | fission_yeast_phenotype | 118 Other | fission_yeast_phenotype | 2003 Other direct assay | fission_yeast_phenotype | 9 Particle size and count assay | fission_yeast_phenotype | 30 Plasmid maintenance assay evidence | fission_yeast_phenotype | 80 RNA protection assay evidence | PomGeneExRNA | 58 RNA-sequencing evidence | PomGeneExRNA | 3816 Substance quantification | fission_yeast_phenotype | 1139 Traceable Author Statement | PSI-MOD | 1 Traceable Author Statement | PomBase family or domain | 5 Traceable Author Statement | biological_process | 140 Traceable Author Statement | cellular_component | 99 Traceable Author Statement | molecular_function | 136 Traceable Author Statement | sequence | 2 Western blot assay | fission_yeast_phenotype | 4391 Western blot evidence | PomGeneExProt | 65 cell growth assay evidence | fission_yeast_phenotype | 34770 competitive growth assay evidence | fission_yeast_phenotype | 1194 differential hybridization evidence | PSI-MOD | 1287 differential hybridization evidence | PomGeneExRNA | 1 experimental evidence | PSI-MOD | 8141 experimental evidence | PomGeneExProt | 1 experimental evidence | PomGeneExRNA | 198 experimental evidence | gene_ex | 20210 experimental phenotypic evidence | fission_yeast_phenotype | 493 expression microarray evidence | PomGeneExRNA | 3517 fusion protein localization evidence | PomGeneExProt | 11 gel electrophoresis evidence | fission_yeast_phenotype | 2480 high throughput nucleotide sequencing assay evidence | fission_yeast_phenotype | 206 immunofluorescence evidence | PomGeneExProt | 6 in situ hybridization assay evidence | gene_ex | 14 in situ hybridization evidence used in manual assertion | PomGeneExRNA | 5 mass spectrometry evidence | PSI-MOD | 3203 mass spectrometry evidence | PomGeneExProt | 614 mass spectrometry evidence | gene_ex | 13682 microscopy evidence used in manual assertion | fission_yeast_phenotype | 659 northern assay evidence used in manual assertion | PomGeneExProt | 5 northern assay evidence used in manual assertion | PomGeneExRNA | 796 protein expression level evidence based on western blot used in manual assertion | gene_ex | 2 quantitative PCR | PomGeneExProt | 3 quantitative PCR | PomGeneExRNA | 112 quantitative PCR | fission_yeast_phenotype | 868 quantitative polymerase chain reaction evidence used in manual assertion | PomGeneExRNA | 8 reporter gene assay evidence | PomGeneExProt | 136 reporter gene assay evidence | PomGeneExRNA | 12 reporter gene assay evidence | fission_yeast_phenotype | 2854 reverse transcription polymerase chain reaction transcription evidence | PomGeneExRNA | 60 ribosome profiling evidence | PomGeneExRD | 735 sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | PomGeneExProt | 2 sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | fission_yeast_phenotype | 22 transcript expression level evidence | PomGeneExRNA | 16 transcript expression level evidence | fission_yeast_phenotype | 3813 tryptic phosphopeptide mapping assay evidence used in automatic assertion | PSI-MOD | 44320 tryptic phosphopeptide mapping assay evidence used in automatic assertion | fission_yeast_phenotype | 149 western blot evidence used in manual assertion | PomGeneExProt | 437 western blot evidence used in manual assertion | PomGeneExRNA | 13 western blot evidence used in manual assertion | fission_yeast_phenotype | 147 (127 rows) total: count -------- 363201 (1 row) counts of annotation from Canto, by type: count | cv_name -------+------------------------------------ 50 | PomGeneExProt 161 | PomGeneExRNA 2188 | PSI-MOD 4314 | biological_process 4418 | molecular_function 5117 | cellular_component 33921 | PomBase annotation extension terms 66554 | fission_yeast_phenotype (8 rows) total ------- 82802 (1 row)