counts of all annotation by type:
count | cv_name
--------+--------------------------------------
6 | external_link
22 | ex_tools
27 | cat_act
27 | pathway
90 | m_f_g
191 | subunit_composition
227 | genome_org
419 | misc
456 | complementation
735 | PomGeneExRD
822 | EC numbers
966 | sequence
978 | name_description
1292 | PomGeneExProt
1813 | warning
1870 | PomBase family or domain
4061 | kegg_pombe_pathway
4566 | mondo
5142 | PomBase gene characterisation status
8748 | PomGeneExRNA
11445 | biological_process
14340 | molecular_function
17783 | cellular_component
25194 | species_dist
33908 | gene_ex
60237 | PSI-MOD
67679 | PomBase gene products
100296 | fission_yeast_phenotype
(28 rows)
annotation counts by evidence code and cv type, sorted by cv name:
ev_code | cv_name | count
----------------------------------------------------------------------------------+--------------------------+-------
Inferred from Direct Assay | PSI-MOD | 3124
Inferred from Mutant Phenotype | PSI-MOD | 1
Inferred from Sequence Model | PSI-MOD | 2
Inferred from Sequence or Structural Similarity | PSI-MOD | 101
Traceable Author Statement | PSI-MOD | 1
differential hybridization evidence | PSI-MOD | 1287
experimental evidence | PSI-MOD | 8141
mass spectrometry evidence | PSI-MOD | 3203
tryptic phosphopeptide mapping assay evidence used in automatic assertion | PSI-MOD | 44320
Inferred from Sequence or Structural Similarity | PomBase family or domain | 5
Traceable Author Statement | PomBase family or domain | 5
Microscopy | PomGeneExProt | 6
Western blot evidence | PomGeneExProt | 65
experimental evidence | PomGeneExProt | 1
fusion protein localization evidence | PomGeneExProt | 11
immunofluorescence evidence | PomGeneExProt | 6
mass spectrometry evidence | PomGeneExProt | 614
northern assay evidence used in manual assertion | PomGeneExProt | 5
quantitative PCR | PomGeneExProt | 3
reporter gene assay evidence | PomGeneExProt | 136
sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | PomGeneExProt | 2
western blot evidence used in manual assertion | PomGeneExProt | 437
ribosome profiling evidence | PomGeneExRD | 735
Northern assay evidence | PomGeneExRNA | 112
RNA protection assay evidence | PomGeneExRNA | 58
RNA-sequencing evidence | PomGeneExRNA | 3816
differential hybridization evidence | PomGeneExRNA | 1
experimental evidence | PomGeneExRNA | 198
expression microarray evidence | PomGeneExRNA | 3517
in situ hybridization evidence used in manual assertion | PomGeneExRNA | 5
northern assay evidence used in manual assertion | PomGeneExRNA | 796
quantitative PCR | PomGeneExRNA | 120
quantitative polymerase chain reaction evidence used in manual assertion | PomGeneExRNA | 8
reporter gene assay evidence | PomGeneExRNA | 12
reverse transcription polymerase chain reaction transcription evidence | PomGeneExRNA | 60
transcript expression level evidence | PomGeneExRNA | 16
western blot evidence used in manual assertion | PomGeneExRNA | 13
Inferred by Curator | biological_process | 1086
Inferred from Biological aspect of Ancestor | biological_process | 1248
Inferred from Direct Assay | biological_process | 679
Inferred from Electronic Annotation | biological_process | 528
Inferred from Experiment | biological_process | 373
Inferred from Expression Pattern | biological_process | 20
Inferred from Genetic Interaction | biological_process | 576
Inferred from Mutant Phenotype | biological_process | 3706
Inferred from Physical Interaction | biological_process | 72
Inferred from Sequence Model | biological_process | 165
Inferred from Sequence Orthology | biological_process | 1952
Inferred from Sequence or Structural Similarity | biological_process | 530
Non-traceable Author Statement | biological_process | 373
Traceable Author Statement | biological_process | 137
Inferred by Curator | cellular_component | 547
Inferred from Biological aspect of Ancestor | cellular_component | 961
Inferred from Direct Assay | cellular_component | 5499
Inferred from Electronic Annotation | cellular_component | 939
Inferred from Experiment | cellular_component | 325
Inferred from Genetic Interaction | cellular_component | 46
Inferred from Mutant Phenotype | cellular_component | 58
Inferred from Physical Interaction | cellular_component | 327
Inferred from Sequence Model | cellular_component | 94
Inferred from Sequence Orthology | cellular_component | 1488
Inferred from Sequence or Structural Similarity | cellular_component | 390
Inferred from high throughput direct assay | cellular_component | 6831
Non-traceable Author Statement | cellular_component | 176
Traceable Author Statement | cellular_component | 102
Non-traceable Author Statement | complementation | 1
Chromatin immunoprecipitation experiment | fission_yeast_phenotype | 1916
Chromatography evidence | fission_yeast_phenotype | 69
Co-immunoprecipitation experiment | fission_yeast_phenotype | 970
Electrophoretic mobility shift assay data | fission_yeast_phenotype | 193
Enzyme assay data | fission_yeast_phenotype | 1915
Epitope-tagged protein immunolocalization experiment data | fission_yeast_phenotype | 55
Flow cytometry data | fission_yeast_phenotype | 2161
Immunolocalization experiment data | fission_yeast_phenotype | 23
Microscopy | fission_yeast_phenotype | 37572
Northern assay evidence | fission_yeast_phenotype | 118
Other | fission_yeast_phenotype | 2003
Other direct assay | fission_yeast_phenotype | 8
Particle size and count assay | fission_yeast_phenotype | 30
Plasmid maintenance assay evidence | fission_yeast_phenotype | 80
Substance quantification | fission_yeast_phenotype | 1138
Western blot assay | fission_yeast_phenotype | 4389
cell growth assay evidence | fission_yeast_phenotype | 34789
competitive growth assay evidence | fission_yeast_phenotype | 1194
experimental phenotypic evidence | fission_yeast_phenotype | 493
gel electrophoresis evidence | fission_yeast_phenotype | 2465
high throughput nucleotide sequencing assay evidence | fission_yeast_phenotype | 206
microscopy evidence used in manual assertion | fission_yeast_phenotype | 659
quantitative PCR | fission_yeast_phenotype | 868
reporter gene assay evidence | fission_yeast_phenotype | 2858
sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | fission_yeast_phenotype | 22
transcript expression level evidence | fission_yeast_phenotype | 3806
tryptic phosphopeptide mapping assay evidence used in automatic assertion | fission_yeast_phenotype | 149
western blot evidence used in manual assertion | fission_yeast_phenotype | 147
experimental evidence | gene_ex | 20210
in situ hybridization assay evidence | gene_ex | 14
mass spectrometry evidence | gene_ex | 13682
protein expression level evidence based on western blot used in manual assertion | gene_ex | 2
Inferred from Sequence or Structural Similarity | genome_org | 13
Inferred from Sequence or Structural Similarity | m_f_g | 42
Inferred from Direct Assay | misc | 1
Inferred from Mutant Phenotype | misc | 4
Inferred from Physical Interaction | misc | 2
Inferred from Sequence or Structural Similarity | misc | 1
Inferred by Curator | molecular_function | 143
Inferred from Biological aspect of Ancestor | molecular_function | 847
Inferred from Direct Assay | molecular_function | 1946
Inferred from Electronic Annotation | molecular_function | 1718
Inferred from Experiment | molecular_function | 610
Inferred from Genetic Interaction | molecular_function | 124
Inferred from Key Residues | molecular_function | 1
Inferred from Mutant Phenotype | molecular_function | 855
Inferred from Physical Interaction | molecular_function | 3243
Inferred from Sequence Model | molecular_function | 1176
Inferred from Sequence Orthology | molecular_function | 1344
Inferred from Sequence or Structural Similarity | molecular_function | 478
Inferred from high throughput direct assay | molecular_function | 17
Inferred from high throughput mutant phenotype | molecular_function | 1535
Non-traceable Author Statement | molecular_function | 169
Traceable Author Statement | molecular_function | 134
Inferred from Direct Assay | sequence | 2
Inferred from Experiment | sequence | 7
Inferred from Mutant Phenotype | sequence | 10
Inferred from Sequence or Structural Similarity | sequence | 354
Traceable Author Statement | sequence | 2
Inferred from Direct Assay | subunit_composition | 4
Inferred from Sequence or Structural Similarity | subunit_composition | 1
Inferred from Sequence or Structural Similarity | warning | 100
(128 rows)
annotation counts by evidence code and cv type, sorted by count:
ev_code | cv_name | count
----------------------------------------------------------------------------------+--------------------------+-------
Inferred from Direct Assay | misc | 1
Inferred from Sequence or Structural Similarity | misc | 1
Non-traceable Author Statement | complementation | 1
differential hybridization evidence | PomGeneExRNA | 1
Inferred from Mutant Phenotype | PSI-MOD | 1
Inferred from Sequence or Structural Similarity | subunit_composition | 1
Traceable Author Statement | PSI-MOD | 1
experimental evidence | PomGeneExProt | 1
Inferred from Key Residues | molecular_function | 1
Inferred from Direct Assay | sequence | 2
protein expression level evidence based on western blot used in manual assertion | gene_ex | 2
Inferred from Physical Interaction | misc | 2
Inferred from Sequence Model | PSI-MOD | 2
Traceable Author Statement | sequence | 2
sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | PomGeneExProt | 2
quantitative PCR | PomGeneExProt | 3
Inferred from Mutant Phenotype | misc | 4
Inferred from Direct Assay | subunit_composition | 4
northern assay evidence used in manual assertion | PomGeneExProt | 5
Inferred from Sequence or Structural Similarity | PomBase family or domain | 5
in situ hybridization evidence used in manual assertion | PomGeneExRNA | 5
Traceable Author Statement | PomBase family or domain | 5
immunofluorescence evidence | PomGeneExProt | 6
Microscopy | PomGeneExProt | 6
Inferred from Experiment | sequence | 7
Other direct assay | fission_yeast_phenotype | 8
quantitative polymerase chain reaction evidence used in manual assertion | PomGeneExRNA | 8
Inferred from Mutant Phenotype | sequence | 10
fusion protein localization evidence | PomGeneExProt | 11
reporter gene assay evidence | PomGeneExRNA | 12
western blot evidence used in manual assertion | PomGeneExRNA | 13
Inferred from Sequence or Structural Similarity | genome_org | 13
in situ hybridization assay evidence | gene_ex | 14
transcript expression level evidence | PomGeneExRNA | 16
Inferred from high throughput direct assay | molecular_function | 17
Inferred from Expression Pattern | biological_process | 20
sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | fission_yeast_phenotype | 22
Immunolocalization experiment data | fission_yeast_phenotype | 23
Particle size and count assay | fission_yeast_phenotype | 30
Inferred from Sequence or Structural Similarity | m_f_g | 42
Inferred from Genetic Interaction | cellular_component | 46
Epitope-tagged protein immunolocalization experiment data | fission_yeast_phenotype | 55
RNA protection assay evidence | PomGeneExRNA | 58
Inferred from Mutant Phenotype | cellular_component | 58
reverse transcription polymerase chain reaction transcription evidence | PomGeneExRNA | 60
Western blot evidence | PomGeneExProt | 65
Chromatography evidence | fission_yeast_phenotype | 69
Inferred from Physical Interaction | biological_process | 72
Plasmid maintenance assay evidence | fission_yeast_phenotype | 80
Inferred from Sequence Model | cellular_component | 94
Inferred from Sequence or Structural Similarity | warning | 100
Inferred from Sequence or Structural Similarity | PSI-MOD | 101
Traceable Author Statement | cellular_component | 102
Northern assay evidence | PomGeneExRNA | 112
Northern assay evidence | fission_yeast_phenotype | 118
quantitative PCR | PomGeneExRNA | 120
Inferred from Genetic Interaction | molecular_function | 124
Traceable Author Statement | molecular_function | 134
reporter gene assay evidence | PomGeneExProt | 136
Traceable Author Statement | biological_process | 137
Inferred by Curator | molecular_function | 143
western blot evidence used in manual assertion | fission_yeast_phenotype | 147
tryptic phosphopeptide mapping assay evidence used in automatic assertion | fission_yeast_phenotype | 149
Inferred from Sequence Model | biological_process | 165
Non-traceable Author Statement | molecular_function | 169
Non-traceable Author Statement | cellular_component | 176
Electrophoretic mobility shift assay data | fission_yeast_phenotype | 193
experimental evidence | PomGeneExRNA | 198
high throughput nucleotide sequencing assay evidence | fission_yeast_phenotype | 206
Inferred from Experiment | cellular_component | 325
Inferred from Physical Interaction | cellular_component | 327
Inferred from Sequence or Structural Similarity | sequence | 354
Non-traceable Author Statement | biological_process | 373
Inferred from Experiment | biological_process | 373
Inferred from Sequence or Structural Similarity | cellular_component | 390
western blot evidence used in manual assertion | PomGeneExProt | 437
Inferred from Sequence or Structural Similarity | molecular_function | 478
experimental phenotypic evidence | fission_yeast_phenotype | 493
Inferred from Electronic Annotation | biological_process | 528
Inferred from Sequence or Structural Similarity | biological_process | 530
Inferred by Curator | cellular_component | 547
Inferred from Genetic Interaction | biological_process | 576
Inferred from Experiment | molecular_function | 610
mass spectrometry evidence | PomGeneExProt | 614
microscopy evidence used in manual assertion | fission_yeast_phenotype | 659
Inferred from Direct Assay | biological_process | 679
ribosome profiling evidence | PomGeneExRD | 735
northern assay evidence used in manual assertion | PomGeneExRNA | 796
Inferred from Biological aspect of Ancestor | molecular_function | 847
Inferred from Mutant Phenotype | molecular_function | 855
quantitative PCR | fission_yeast_phenotype | 868
Inferred from Electronic Annotation | cellular_component | 939
Inferred from Biological aspect of Ancestor | cellular_component | 961
Co-immunoprecipitation experiment | fission_yeast_phenotype | 970
Inferred by Curator | biological_process | 1086
Substance quantification | fission_yeast_phenotype | 1138
Inferred from Sequence Model | molecular_function | 1176
competitive growth assay evidence | fission_yeast_phenotype | 1194
Inferred from Biological aspect of Ancestor | biological_process | 1248
differential hybridization evidence | PSI-MOD | 1287
Inferred from Sequence Orthology | molecular_function | 1344
Inferred from Sequence Orthology | cellular_component | 1488
Inferred from high throughput mutant phenotype | molecular_function | 1535
Inferred from Electronic Annotation | molecular_function | 1718
Enzyme assay data | fission_yeast_phenotype | 1915
Chromatin immunoprecipitation experiment | fission_yeast_phenotype | 1916
Inferred from Direct Assay | molecular_function | 1946
Inferred from Sequence Orthology | biological_process | 1952
Other | fission_yeast_phenotype | 2003
Flow cytometry data | fission_yeast_phenotype | 2161
gel electrophoresis evidence | fission_yeast_phenotype | 2465
reporter gene assay evidence | fission_yeast_phenotype | 2858
Inferred from Direct Assay | PSI-MOD | 3124
mass spectrometry evidence | PSI-MOD | 3203
Inferred from Physical Interaction | molecular_function | 3243
expression microarray evidence | PomGeneExRNA | 3517
Inferred from Mutant Phenotype | biological_process | 3706
transcript expression level evidence | fission_yeast_phenotype | 3806
RNA-sequencing evidence | PomGeneExRNA | 3816
Western blot assay | fission_yeast_phenotype | 4389
Inferred from Direct Assay | cellular_component | 5499
Inferred from high throughput direct assay | cellular_component | 6831
experimental evidence | PSI-MOD | 8141
mass spectrometry evidence | gene_ex | 13682
experimental evidence | gene_ex | 20210
cell growth assay evidence | fission_yeast_phenotype | 34789
Microscopy | fission_yeast_phenotype | 37572
tryptic phosphopeptide mapping assay evidence used in automatic assertion | PSI-MOD | 44320
(128 rows)
annotation counts by evidence code and cv type, sorted by cv evidence code:
ev_code | cv_name | count
----------------------------------------------------------------------------------+--------------------------+-------
Chromatin immunoprecipitation experiment | fission_yeast_phenotype | 1916
Chromatography evidence | fission_yeast_phenotype | 69
Co-immunoprecipitation experiment | fission_yeast_phenotype | 970
Electrophoretic mobility shift assay data | fission_yeast_phenotype | 193
Enzyme assay data | fission_yeast_phenotype | 1915
Epitope-tagged protein immunolocalization experiment data | fission_yeast_phenotype | 55
Flow cytometry data | fission_yeast_phenotype | 2161
Immunolocalization experiment data | fission_yeast_phenotype | 23
Inferred by Curator | biological_process | 1086
Inferred by Curator | cellular_component | 547
Inferred by Curator | molecular_function | 143
Inferred from Biological aspect of Ancestor | biological_process | 1248
Inferred from Biological aspect of Ancestor | cellular_component | 961
Inferred from Biological aspect of Ancestor | molecular_function | 847
Inferred from Direct Assay | PSI-MOD | 3124
Inferred from Direct Assay | biological_process | 679
Inferred from Direct Assay | cellular_component | 5499
Inferred from Direct Assay | misc | 1
Inferred from Direct Assay | molecular_function | 1946
Inferred from Direct Assay | sequence | 2
Inferred from Direct Assay | subunit_composition | 4
Inferred from Electronic Annotation | biological_process | 528
Inferred from Electronic Annotation | cellular_component | 939
Inferred from Electronic Annotation | molecular_function | 1718
Inferred from Experiment | biological_process | 373
Inferred from Experiment | cellular_component | 325
Inferred from Experiment | molecular_function | 610
Inferred from Experiment | sequence | 7
Inferred from Expression Pattern | biological_process | 20
Inferred from Genetic Interaction | biological_process | 576
Inferred from Genetic Interaction | cellular_component | 46
Inferred from Genetic Interaction | molecular_function | 124
Inferred from Key Residues | molecular_function | 1
Inferred from Mutant Phenotype | PSI-MOD | 1
Inferred from Mutant Phenotype | biological_process | 3706
Inferred from Mutant Phenotype | cellular_component | 58
Inferred from Mutant Phenotype | misc | 4
Inferred from Mutant Phenotype | molecular_function | 855
Inferred from Mutant Phenotype | sequence | 10
Inferred from Physical Interaction | biological_process | 72
Inferred from Physical Interaction | cellular_component | 327
Inferred from Physical Interaction | misc | 2
Inferred from Physical Interaction | molecular_function | 3243
Inferred from Sequence Model | PSI-MOD | 2
Inferred from Sequence Model | biological_process | 165
Inferred from Sequence Model | cellular_component | 94
Inferred from Sequence Model | molecular_function | 1176
Inferred from Sequence Orthology | biological_process | 1952
Inferred from Sequence Orthology | cellular_component | 1488
Inferred from Sequence Orthology | molecular_function | 1344
Inferred from Sequence or Structural Similarity | PSI-MOD | 101
Inferred from Sequence or Structural Similarity | PomBase family or domain | 5
Inferred from Sequence or Structural Similarity | biological_process | 530
Inferred from Sequence or Structural Similarity | cellular_component | 390
Inferred from Sequence or Structural Similarity | genome_org | 13
Inferred from Sequence or Structural Similarity | m_f_g | 42
Inferred from Sequence or Structural Similarity | misc | 1
Inferred from Sequence or Structural Similarity | molecular_function | 478
Inferred from Sequence or Structural Similarity | sequence | 354
Inferred from Sequence or Structural Similarity | subunit_composition | 1
Inferred from Sequence or Structural Similarity | warning | 100
Inferred from high throughput direct assay | cellular_component | 6831
Inferred from high throughput direct assay | molecular_function | 17
Inferred from high throughput mutant phenotype | molecular_function | 1535
Microscopy | PomGeneExProt | 6
Microscopy | fission_yeast_phenotype | 37572
Non-traceable Author Statement | biological_process | 373
Non-traceable Author Statement | cellular_component | 176
Non-traceable Author Statement | complementation | 1
Non-traceable Author Statement | molecular_function | 169
Northern assay evidence | PomGeneExRNA | 112
Northern assay evidence | fission_yeast_phenotype | 118
Other | fission_yeast_phenotype | 2003
Other direct assay | fission_yeast_phenotype | 8
Particle size and count assay | fission_yeast_phenotype | 30
Plasmid maintenance assay evidence | fission_yeast_phenotype | 80
RNA protection assay evidence | PomGeneExRNA | 58
RNA-sequencing evidence | PomGeneExRNA | 3816
Substance quantification | fission_yeast_phenotype | 1138
Traceable Author Statement | PSI-MOD | 1
Traceable Author Statement | PomBase family or domain | 5
Traceable Author Statement | biological_process | 137
Traceable Author Statement | cellular_component | 102
Traceable Author Statement | molecular_function | 134
Traceable Author Statement | sequence | 2
Western blot assay | fission_yeast_phenotype | 4389
Western blot evidence | PomGeneExProt | 65
cell growth assay evidence | fission_yeast_phenotype | 34789
competitive growth assay evidence | fission_yeast_phenotype | 1194
differential hybridization evidence | PSI-MOD | 1287
differential hybridization evidence | PomGeneExRNA | 1
experimental evidence | PSI-MOD | 8141
experimental evidence | PomGeneExProt | 1
experimental evidence | PomGeneExRNA | 198
experimental evidence | gene_ex | 20210
experimental phenotypic evidence | fission_yeast_phenotype | 493
expression microarray evidence | PomGeneExRNA | 3517
fusion protein localization evidence | PomGeneExProt | 11
gel electrophoresis evidence | fission_yeast_phenotype | 2465
high throughput nucleotide sequencing assay evidence | fission_yeast_phenotype | 206
immunofluorescence evidence | PomGeneExProt | 6
in situ hybridization assay evidence | gene_ex | 14
in situ hybridization evidence used in manual assertion | PomGeneExRNA | 5
mass spectrometry evidence | PSI-MOD | 3203
mass spectrometry evidence | PomGeneExProt | 614
mass spectrometry evidence | gene_ex | 13682
microscopy evidence used in manual assertion | fission_yeast_phenotype | 659
northern assay evidence used in manual assertion | PomGeneExProt | 5
northern assay evidence used in manual assertion | PomGeneExRNA | 796
protein expression level evidence based on western blot used in manual assertion | gene_ex | 2
quantitative PCR | PomGeneExProt | 3
quantitative PCR | PomGeneExRNA | 120
quantitative PCR | fission_yeast_phenotype | 868
quantitative polymerase chain reaction evidence used in manual assertion | PomGeneExRNA | 8
reporter gene assay evidence | PomGeneExProt | 136
reporter gene assay evidence | PomGeneExRNA | 12
reporter gene assay evidence | fission_yeast_phenotype | 2858
reverse transcription polymerase chain reaction transcription evidence | PomGeneExRNA | 60
ribosome profiling evidence | PomGeneExRD | 735
sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | PomGeneExProt | 2
sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | fission_yeast_phenotype | 22
transcript expression level evidence | PomGeneExRNA | 16
transcript expression level evidence | fission_yeast_phenotype | 3806
tryptic phosphopeptide mapping assay evidence used in automatic assertion | PSI-MOD | 44320
tryptic phosphopeptide mapping assay evidence used in automatic assertion | fission_yeast_phenotype | 149
western blot evidence used in manual assertion | PomGeneExProt | 437
western blot evidence used in manual assertion | PomGeneExRNA | 13
western blot evidence used in manual assertion | fission_yeast_phenotype | 147
(128 rows)
total:
count
--------
363340
(1 row)
counts of annotation from Canto, by type:
count | cv_name
-------+------------------------------------
7 | sequence
50 | PomGeneExProt
169 | PomGeneExRNA
2195 | PSI-MOD
4303 | biological_process
4441 | molecular_function
5151 | cellular_component
34112 | PomBase annotation extension terms
66701 | fission_yeast_phenotype
(9 rows)
total
-------
83017
(1 row)