counts of all annotation by type: count | cv_name --------+-------------------------------------- 6 | external_link 22 | ex_tools 27 | cat_act 27 | pathway 90 | m_f_g 191 | subunit_composition 226 | genome_org 417 | misc 456 | complementation 735 | PomGeneExRD 821 | EC numbers 966 | sequence 979 | name_description 1292 | PomGeneExProt 1841 | warning 1872 | PomBase family or domain 4057 | kegg_pombe_pathway 4560 | mondo 5142 | PomBase gene characterisation status 8749 | PomGeneExRNA 11283 | biological_process 14381 | molecular_function 16968 | cellular_component 25214 | species_dist 33808 | gene_ex 60247 | PSI-MOD 67837 | PomBase gene products 100812 | fission_yeast_phenotype (28 rows) annotation counts by evidence code and cv type, sorted by cv name: ev_code | cv_name | count ----------------------------------------------------------------------------------+--------------------------+------- Inferred from Direct Assay | PSI-MOD | 3134 Inferred from Mutant Phenotype | PSI-MOD | 1 Inferred from Sequence Model | PSI-MOD | 2 Inferred from Sequence or Structural Similarity | PSI-MOD | 101 Traceable Author Statement | PSI-MOD | 1 differential hybridization evidence | PSI-MOD | 1287 experimental evidence | PSI-MOD | 8141 mass spectrometry evidence | PSI-MOD | 3203 tryptic phosphopeptide mapping assay evidence used in automatic assertion | PSI-MOD | 44320 Inferred from Sequence or Structural Similarity | PomBase family or domain | 5 Traceable Author Statement | PomBase family or domain | 5 Microscopy | PomGeneExProt | 6 Western blot evidence | PomGeneExProt | 65 experimental evidence | PomGeneExProt | 1 fusion protein localization evidence | PomGeneExProt | 11 immunofluorescence evidence | PomGeneExProt | 6 mass spectrometry evidence | PomGeneExProt | 614 northern assay evidence used in manual assertion | PomGeneExProt | 5 quantitative PCR | PomGeneExProt | 3 reporter gene assay evidence | PomGeneExProt | 136 sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | PomGeneExProt | 2 western blot evidence used in manual assertion | PomGeneExProt | 437 ribosome profiling evidence | PomGeneExRD | 735 Northern assay evidence | PomGeneExRNA | 112 RNA protection assay evidence | PomGeneExRNA | 58 RNA-sequencing evidence | PomGeneExRNA | 3814 differential hybridization evidence | PomGeneExRNA | 1 experimental evidence | PomGeneExRNA | 198 expression microarray evidence | PomGeneExRNA | 3517 in situ hybridization evidence used in manual assertion | PomGeneExRNA | 5 northern assay evidence used in manual assertion | PomGeneExRNA | 796 quantitative PCR | PomGeneExRNA | 123 quantitative polymerase chain reaction evidence used in manual assertion | PomGeneExRNA | 8 reporter gene assay evidence | PomGeneExRNA | 12 reverse transcription polymerase chain reaction transcription evidence | PomGeneExRNA | 60 transcript expression level evidence | PomGeneExRNA | 16 western blot evidence used in manual assertion | PomGeneExRNA | 13 Inferred by Curator | biological_process | 1083 Inferred from Biological aspect of Ancestor | biological_process | 1208 Inferred from Direct Assay | biological_process | 639 Inferred from Electronic Annotation | biological_process | 511 Inferred from Experiment | biological_process | 388 Inferred from Expression Pattern | biological_process | 19 Inferred from Genetic Interaction | biological_process | 554 Inferred from Mutant Phenotype | biological_process | 3664 Inferred from Physical Interaction | biological_process | 73 Inferred from Sequence Model | biological_process | 161 Inferred from Sequence Orthology | biological_process | 1943 Inferred from Sequence or Structural Similarity | biological_process | 524 Non-traceable Author Statement | biological_process | 381 Traceable Author Statement | biological_process | 135 Inferred by Curator | cellular_component | 552 Inferred from Biological aspect of Ancestor | cellular_component | 916 Inferred from Direct Assay | cellular_component | 5517 Inferred from Electronic Annotation | cellular_component | 266 Inferred from Experiment | cellular_component | 321 Inferred from Genetic Interaction | cellular_component | 46 Inferred from Mutant Phenotype | cellular_component | 58 Inferred from Physical Interaction | cellular_component | 328 Inferred from Sequence Model | cellular_component | 80 Inferred from Sequence Orthology | cellular_component | 1482 Inferred from Sequence or Structural Similarity | cellular_component | 381 Inferred from high throughput direct assay | cellular_component | 6813 Non-traceable Author Statement | cellular_component | 111 Traceable Author Statement | cellular_component | 97 Non-traceable Author Statement | complementation | 1 Chromatin immunoprecipitation experiment | fission_yeast_phenotype | 1930 Chromatography evidence | fission_yeast_phenotype | 69 Co-immunoprecipitation experiment | fission_yeast_phenotype | 977 Electrophoretic mobility shift assay data | fission_yeast_phenotype | 193 Enzyme assay data | fission_yeast_phenotype | 2018 Epitope-tagged protein immunolocalization experiment data | fission_yeast_phenotype | 55 Flow cytometry data | fission_yeast_phenotype | 2160 Immunolocalization experiment data | fission_yeast_phenotype | 23 Microscopy | fission_yeast_phenotype | 37594 Northern assay evidence | fission_yeast_phenotype | 118 Other | fission_yeast_phenotype | 2007 Other direct assay | fission_yeast_phenotype | 8 Particle size and count assay | fission_yeast_phenotype | 30 Plasmid maintenance assay evidence | fission_yeast_phenotype | 80 Substance quantification | fission_yeast_phenotype | 1138 Western blot assay | fission_yeast_phenotype | 4398 cell growth assay evidence | fission_yeast_phenotype | 35091 competitive growth assay evidence | fission_yeast_phenotype | 1194 experimental phenotypic evidence | fission_yeast_phenotype | 493 gel electrophoresis evidence | fission_yeast_phenotype | 2469 high throughput nucleotide sequencing assay evidence | fission_yeast_phenotype | 206 microscopy evidence used in manual assertion | fission_yeast_phenotype | 659 quantitative PCR | fission_yeast_phenotype | 868 reporter gene assay evidence | fission_yeast_phenotype | 2875 sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | fission_yeast_phenotype | 22 transcript expression level evidence | fission_yeast_phenotype | 3841 tryptic phosphopeptide mapping assay evidence used in automatic assertion | fission_yeast_phenotype | 149 western blot evidence used in manual assertion | fission_yeast_phenotype | 147 experimental evidence | gene_ex | 20110 in situ hybridization assay evidence | gene_ex | 14 mass spectrometry evidence | gene_ex | 13682 protein expression level evidence based on western blot used in manual assertion | gene_ex | 2 Inferred from Sequence or Structural Similarity | genome_org | 12 Inferred from Sequence or Structural Similarity | m_f_g | 42 Inferred from Direct Assay | misc | 1 Inferred from Mutant Phenotype | misc | 4 Inferred from Physical Interaction | misc | 2 Inferred from Sequence or Structural Similarity | misc | 1 Inferred by Curator | molecular_function | 143 Inferred from Biological aspect of Ancestor | molecular_function | 830 Inferred from Direct Assay | molecular_function | 1956 Inferred from Electronic Annotation | molecular_function | 1716 Inferred from Experiment | molecular_function | 635 Inferred from Genetic Interaction | molecular_function | 125 Inferred from Key Residues | molecular_function | 1 Inferred from Mutant Phenotype | molecular_function | 866 Inferred from Physical Interaction | molecular_function | 3241 Inferred from Sequence Model | molecular_function | 1173 Inferred from Sequence Orthology | molecular_function | 1351 Inferred from Sequence or Structural Similarity | molecular_function | 482 Inferred from high throughput direct assay | molecular_function | 17 Inferred from high throughput mutant phenotype | molecular_function | 1535 Non-traceable Author Statement | molecular_function | 173 Traceable Author Statement | molecular_function | 137 Inferred from Direct Assay | sequence | 2 Inferred from Experiment | sequence | 7 Inferred from Mutant Phenotype | sequence | 10 Inferred from Sequence or Structural Similarity | sequence | 354 Traceable Author Statement | sequence | 2 Inferred from Direct Assay | subunit_composition | 4 Inferred from Sequence or Structural Similarity | subunit_composition | 1 Inferred from Sequence or Structural Similarity | warning | 94 (128 rows) annotation counts by evidence code and cv type, sorted by count: ev_code | cv_name | count ----------------------------------------------------------------------------------+--------------------------+------- differential hybridization evidence | PomGeneExRNA | 1 experimental evidence | PomGeneExProt | 1 Traceable Author Statement | PSI-MOD | 1 Inferred from Sequence or Structural Similarity | misc | 1 Inferred from Direct Assay | misc | 1 Inferred from Key Residues | molecular_function | 1 Inferred from Sequence or Structural Similarity | subunit_composition | 1 Non-traceable Author Statement | complementation | 1 Inferred from Mutant Phenotype | PSI-MOD | 1 Inferred from Sequence Model | PSI-MOD | 2 Inferred from Direct Assay | sequence | 2 protein expression level evidence based on western blot used in manual assertion | gene_ex | 2 sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | PomGeneExProt | 2 Traceable Author Statement | sequence | 2 Inferred from Physical Interaction | misc | 2 quantitative PCR | PomGeneExProt | 3 Inferred from Mutant Phenotype | misc | 4 Inferred from Direct Assay | subunit_composition | 4 in situ hybridization evidence used in manual assertion | PomGeneExRNA | 5 Inferred from Sequence or Structural Similarity | PomBase family or domain | 5 northern assay evidence used in manual assertion | PomGeneExProt | 5 Traceable Author Statement | PomBase family or domain | 5 Microscopy | PomGeneExProt | 6 immunofluorescence evidence | PomGeneExProt | 6 Inferred from Experiment | sequence | 7 Other direct assay | fission_yeast_phenotype | 8 quantitative polymerase chain reaction evidence used in manual assertion | PomGeneExRNA | 8 Inferred from Mutant Phenotype | sequence | 10 fusion protein localization evidence | PomGeneExProt | 11 reporter gene assay evidence | PomGeneExRNA | 12 Inferred from Sequence or Structural Similarity | genome_org | 12 western blot evidence used in manual assertion | PomGeneExRNA | 13 in situ hybridization assay evidence | gene_ex | 14 transcript expression level evidence | PomGeneExRNA | 16 Inferred from high throughput direct assay | molecular_function | 17 Inferred from Expression Pattern | biological_process | 19 sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | fission_yeast_phenotype | 22 Immunolocalization experiment data | fission_yeast_phenotype | 23 Particle size and count assay | fission_yeast_phenotype | 30 Inferred from Sequence or Structural Similarity | m_f_g | 42 Inferred from Genetic Interaction | cellular_component | 46 Epitope-tagged protein immunolocalization experiment data | fission_yeast_phenotype | 55 RNA protection assay evidence | PomGeneExRNA | 58 Inferred from Mutant Phenotype | cellular_component | 58 reverse transcription polymerase chain reaction transcription evidence | PomGeneExRNA | 60 Western blot evidence | PomGeneExProt | 65 Chromatography evidence | fission_yeast_phenotype | 69 Inferred from Physical Interaction | biological_process | 73 Inferred from Sequence Model | cellular_component | 80 Plasmid maintenance assay evidence | fission_yeast_phenotype | 80 Inferred from Sequence or Structural Similarity | warning | 94 Traceable Author Statement | cellular_component | 97 Inferred from Sequence or Structural Similarity | PSI-MOD | 101 Non-traceable Author Statement | cellular_component | 111 Northern assay evidence | PomGeneExRNA | 112 Northern assay evidence | fission_yeast_phenotype | 118 quantitative PCR | PomGeneExRNA | 123 Inferred from Genetic Interaction | molecular_function | 125 Traceable Author Statement | biological_process | 135 reporter gene assay evidence | PomGeneExProt | 136 Traceable Author Statement | molecular_function | 137 Inferred by Curator | molecular_function | 143 western blot evidence used in manual assertion | fission_yeast_phenotype | 147 tryptic phosphopeptide mapping assay evidence used in automatic assertion | fission_yeast_phenotype | 149 Inferred from Sequence Model | biological_process | 161 Non-traceable Author Statement | molecular_function | 173 Electrophoretic mobility shift assay data | fission_yeast_phenotype | 193 experimental evidence | PomGeneExRNA | 198 high throughput nucleotide sequencing assay evidence | fission_yeast_phenotype | 206 Inferred from Electronic Annotation | cellular_component | 266 Inferred from Experiment | cellular_component | 321 Inferred from Physical Interaction | cellular_component | 328 Inferred from Sequence or Structural Similarity | sequence | 354 Non-traceable Author Statement | biological_process | 381 Inferred from Sequence or Structural Similarity | cellular_component | 381 Inferred from Experiment | biological_process | 388 western blot evidence used in manual assertion | PomGeneExProt | 437 Inferred from Sequence or Structural Similarity | molecular_function | 482 experimental phenotypic evidence | fission_yeast_phenotype | 493 Inferred from Electronic Annotation | biological_process | 511 Inferred from Sequence or Structural Similarity | biological_process | 524 Inferred by Curator | cellular_component | 552 Inferred from Genetic Interaction | biological_process | 554 mass spectrometry evidence | PomGeneExProt | 614 Inferred from Experiment | molecular_function | 635 Inferred from Direct Assay | biological_process | 639 microscopy evidence used in manual assertion | fission_yeast_phenotype | 659 ribosome profiling evidence | PomGeneExRD | 735 northern assay evidence used in manual assertion | PomGeneExRNA | 796 Inferred from Biological aspect of Ancestor | molecular_function | 830 Inferred from Mutant Phenotype | molecular_function | 866 quantitative PCR | fission_yeast_phenotype | 868 Inferred from Biological aspect of Ancestor | cellular_component | 916 Co-immunoprecipitation experiment | fission_yeast_phenotype | 977 Inferred by Curator | biological_process | 1083 Substance quantification | fission_yeast_phenotype | 1138 Inferred from Sequence Model | molecular_function | 1173 competitive growth assay evidence | fission_yeast_phenotype | 1194 Inferred from Biological aspect of Ancestor | biological_process | 1208 differential hybridization evidence | PSI-MOD | 1287 Inferred from Sequence Orthology | molecular_function | 1351 Inferred from Sequence Orthology | cellular_component | 1482 Inferred from high throughput mutant phenotype | molecular_function | 1535 Inferred from Electronic Annotation | molecular_function | 1716 Chromatin immunoprecipitation experiment | fission_yeast_phenotype | 1930 Inferred from Sequence Orthology | biological_process | 1943 Inferred from Direct Assay | molecular_function | 1956 Other | fission_yeast_phenotype | 2007 Enzyme assay data | fission_yeast_phenotype | 2018 Flow cytometry data | fission_yeast_phenotype | 2160 gel electrophoresis evidence | fission_yeast_phenotype | 2469 reporter gene assay evidence | fission_yeast_phenotype | 2875 Inferred from Direct Assay | PSI-MOD | 3134 mass spectrometry evidence | PSI-MOD | 3203 Inferred from Physical Interaction | molecular_function | 3241 expression microarray evidence | PomGeneExRNA | 3517 Inferred from Mutant Phenotype | biological_process | 3664 RNA-sequencing evidence | PomGeneExRNA | 3814 transcript expression level evidence | fission_yeast_phenotype | 3841 Western blot assay | fission_yeast_phenotype | 4398 Inferred from Direct Assay | cellular_component | 5517 Inferred from high throughput direct assay | cellular_component | 6813 experimental evidence | PSI-MOD | 8141 mass spectrometry evidence | gene_ex | 13682 experimental evidence | gene_ex | 20110 cell growth assay evidence | fission_yeast_phenotype | 35091 Microscopy | fission_yeast_phenotype | 37594 tryptic phosphopeptide mapping assay evidence used in automatic assertion | PSI-MOD | 44320 (128 rows) annotation counts by evidence code and cv type, sorted by cv evidence code: ev_code | cv_name | count ----------------------------------------------------------------------------------+--------------------------+------- Chromatin immunoprecipitation experiment | fission_yeast_phenotype | 1930 Chromatography evidence | fission_yeast_phenotype | 69 Co-immunoprecipitation experiment | fission_yeast_phenotype | 977 Electrophoretic mobility shift assay data | fission_yeast_phenotype | 193 Enzyme assay data | fission_yeast_phenotype | 2018 Epitope-tagged protein immunolocalization experiment data | fission_yeast_phenotype | 55 Flow cytometry data | fission_yeast_phenotype | 2160 Immunolocalization experiment data | fission_yeast_phenotype | 23 Inferred by Curator | biological_process | 1083 Inferred by Curator | cellular_component | 552 Inferred by Curator | molecular_function | 143 Inferred from Biological aspect of Ancestor | biological_process | 1208 Inferred from Biological aspect of Ancestor | cellular_component | 916 Inferred from Biological aspect of Ancestor | molecular_function | 830 Inferred from Direct Assay | PSI-MOD | 3134 Inferred from Direct Assay | biological_process | 639 Inferred from Direct Assay | cellular_component | 5517 Inferred from Direct Assay | misc | 1 Inferred from Direct Assay | molecular_function | 1956 Inferred from Direct Assay | sequence | 2 Inferred from Direct Assay | subunit_composition | 4 Inferred from Electronic Annotation | biological_process | 511 Inferred from Electronic Annotation | cellular_component | 266 Inferred from Electronic Annotation | molecular_function | 1716 Inferred from Experiment | biological_process | 388 Inferred from Experiment | cellular_component | 321 Inferred from Experiment | molecular_function | 635 Inferred from Experiment | sequence | 7 Inferred from Expression Pattern | biological_process | 19 Inferred from Genetic Interaction | biological_process | 554 Inferred from Genetic Interaction | cellular_component | 46 Inferred from Genetic Interaction | molecular_function | 125 Inferred from Key Residues | molecular_function | 1 Inferred from Mutant Phenotype | PSI-MOD | 1 Inferred from Mutant Phenotype | biological_process | 3664 Inferred from Mutant Phenotype | cellular_component | 58 Inferred from Mutant Phenotype | misc | 4 Inferred from Mutant Phenotype | molecular_function | 866 Inferred from Mutant Phenotype | sequence | 10 Inferred from Physical Interaction | biological_process | 73 Inferred from Physical Interaction | cellular_component | 328 Inferred from Physical Interaction | misc | 2 Inferred from Physical Interaction | molecular_function | 3241 Inferred from Sequence Model | PSI-MOD | 2 Inferred from Sequence Model | biological_process | 161 Inferred from Sequence Model | cellular_component | 80 Inferred from Sequence Model | molecular_function | 1173 Inferred from Sequence Orthology | biological_process | 1943 Inferred from Sequence Orthology | cellular_component | 1482 Inferred from Sequence Orthology | molecular_function | 1351 Inferred from Sequence or Structural Similarity | PSI-MOD | 101 Inferred from Sequence or Structural Similarity | PomBase family or domain | 5 Inferred from Sequence or Structural Similarity | biological_process | 524 Inferred from Sequence or Structural Similarity | cellular_component | 381 Inferred from Sequence or Structural Similarity | genome_org | 12 Inferred from Sequence or Structural Similarity | m_f_g | 42 Inferred from Sequence or Structural Similarity | misc | 1 Inferred from Sequence or Structural Similarity | molecular_function | 482 Inferred from Sequence or Structural Similarity | sequence | 354 Inferred from Sequence or Structural Similarity | subunit_composition | 1 Inferred from Sequence or Structural Similarity | warning | 94 Inferred from high throughput direct assay | cellular_component | 6813 Inferred from high throughput direct assay | molecular_function | 17 Inferred from high throughput mutant phenotype | molecular_function | 1535 Microscopy | PomGeneExProt | 6 Microscopy | fission_yeast_phenotype | 37594 Non-traceable Author Statement | biological_process | 381 Non-traceable Author Statement | cellular_component | 111 Non-traceable Author Statement | complementation | 1 Non-traceable Author Statement | molecular_function | 173 Northern assay evidence | PomGeneExRNA | 112 Northern assay evidence | fission_yeast_phenotype | 118 Other | fission_yeast_phenotype | 2007 Other direct assay | fission_yeast_phenotype | 8 Particle size and count assay | fission_yeast_phenotype | 30 Plasmid maintenance assay evidence | fission_yeast_phenotype | 80 RNA protection assay evidence | PomGeneExRNA | 58 RNA-sequencing evidence | PomGeneExRNA | 3814 Substance quantification | fission_yeast_phenotype | 1138 Traceable Author Statement | PSI-MOD | 1 Traceable Author Statement | PomBase family or domain | 5 Traceable Author Statement | biological_process | 135 Traceable Author Statement | cellular_component | 97 Traceable Author Statement | molecular_function | 137 Traceable Author Statement | sequence | 2 Western blot assay | fission_yeast_phenotype | 4398 Western blot evidence | PomGeneExProt | 65 cell growth assay evidence | fission_yeast_phenotype | 35091 competitive growth assay evidence | fission_yeast_phenotype | 1194 differential hybridization evidence | PSI-MOD | 1287 differential hybridization evidence | PomGeneExRNA | 1 experimental evidence | PSI-MOD | 8141 experimental evidence | PomGeneExProt | 1 experimental evidence | PomGeneExRNA | 198 experimental evidence | gene_ex | 20110 experimental phenotypic evidence | fission_yeast_phenotype | 493 expression microarray evidence | PomGeneExRNA | 3517 fusion protein localization evidence | PomGeneExProt | 11 gel electrophoresis evidence | fission_yeast_phenotype | 2469 high throughput nucleotide sequencing assay evidence | fission_yeast_phenotype | 206 immunofluorescence evidence | PomGeneExProt | 6 in situ hybridization assay evidence | gene_ex | 14 in situ hybridization evidence used in manual assertion | PomGeneExRNA | 5 mass spectrometry evidence | PSI-MOD | 3203 mass spectrometry evidence | PomGeneExProt | 614 mass spectrometry evidence | gene_ex | 13682 microscopy evidence used in manual assertion | fission_yeast_phenotype | 659 northern assay evidence used in manual assertion | PomGeneExProt | 5 northern assay evidence used in manual assertion | PomGeneExRNA | 796 protein expression level evidence based on western blot used in manual assertion | gene_ex | 2 quantitative PCR | PomGeneExProt | 3 quantitative PCR | PomGeneExRNA | 123 quantitative PCR | fission_yeast_phenotype | 868 quantitative polymerase chain reaction evidence used in manual assertion | PomGeneExRNA | 8 reporter gene assay evidence | PomGeneExProt | 136 reporter gene assay evidence | PomGeneExRNA | 12 reporter gene assay evidence | fission_yeast_phenotype | 2875 reverse transcription polymerase chain reaction transcription evidence | PomGeneExRNA | 60 ribosome profiling evidence | PomGeneExRD | 735 sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | PomGeneExProt | 2 sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | fission_yeast_phenotype | 22 transcript expression level evidence | PomGeneExRNA | 16 transcript expression level evidence | fission_yeast_phenotype | 3841 tryptic phosphopeptide mapping assay evidence used in automatic assertion | PSI-MOD | 44320 tryptic phosphopeptide mapping assay evidence used in automatic assertion | fission_yeast_phenotype | 149 western blot evidence used in manual assertion | PomGeneExProt | 437 western blot evidence used in manual assertion | PomGeneExRNA | 13 western blot evidence used in manual assertion | fission_yeast_phenotype | 147 (128 rows) total: count -------- 363026 (1 row) counts of annotation from Canto, by type: count | cv_name -------+------------------------------------ 7 | sequence 50 | PomGeneExProt 172 | PomGeneExRNA 2205 | PSI-MOD 4239 | biological_process 4487 | molecular_function 5166 | cellular_component 34368 | PomBase annotation extension terms 67218 | fission_yeast_phenotype (9 rows) total ------- 83544 (1 row)