counts of all annotation by type:
count | cv_name
--------+--------------------------------------
6 | external_link
22 | ex_tools
27 | cat_act
27 | pathway
90 | m_f_g
191 | subunit_composition
200 | genome_org
418 | misc
456 | complementation
735 | PomGeneExRD
821 | EC numbers
882 | sequence
983 | name_description
1292 | PomGeneExProt
1692 | warning
1871 | PomBase family or domain
4057 | kegg_pombe_pathway
4561 | mondo
5142 | PomBase gene characterisation status
8748 | PomGeneExRNA
11275 | biological_process
14323 | molecular_function
16969 | cellular_component
25211 | species_dist
33660 | gene_ex
60271 | PSI-MOD
67922 | PomBase gene products
101699 | fission_yeast_phenotype
(28 rows)
annotation counts by evidence code and cv type, sorted by cv name:
ev_code | cv_name | count
----------------------------------------------------------------------------------+--------------------------+-------
Inferred from Direct Assay | PSI-MOD | 3158
Inferred from Mutant Phenotype | PSI-MOD | 1
Inferred from Sequence Model | PSI-MOD | 2
Inferred from Sequence or Structural Similarity | PSI-MOD | 101
Traceable Author Statement | PSI-MOD | 1
differential hybridization evidence | PSI-MOD | 1287
experimental evidence | PSI-MOD | 8141
mass spectrometry evidence | PSI-MOD | 3203
tryptic phosphopeptide mapping assay evidence used in automatic assertion | PSI-MOD | 44320
Inferred from Sequence or Structural Similarity | PomBase family or domain | 6
Traceable Author Statement | PomBase family or domain | 5
Microscopy | PomGeneExProt | 6
Western blot evidence | PomGeneExProt | 65
experimental evidence | PomGeneExProt | 1
fusion protein localization evidence | PomGeneExProt | 11
immunofluorescence evidence | PomGeneExProt | 6
mass spectrometry evidence | PomGeneExProt | 614
northern assay evidence used in manual assertion | PomGeneExProt | 5
quantitative PCR | PomGeneExProt | 3
reporter gene assay evidence | PomGeneExProt | 136
sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | PomGeneExProt | 2
western blot evidence used in manual assertion | PomGeneExProt | 437
ribosome profiling evidence | PomGeneExRD | 735
Northern assay evidence | PomGeneExRNA | 114
RNA protection assay evidence | PomGeneExRNA | 58
RNA-sequencing evidence | PomGeneExRNA | 3811
differential hybridization evidence | PomGeneExRNA | 1
experimental evidence | PomGeneExRNA | 198
expression microarray evidence | PomGeneExRNA | 3517
in situ hybridization evidence used in manual assertion | PomGeneExRNA | 5
northern assay evidence used in manual assertion | PomGeneExRNA | 796
quantitative PCR | PomGeneExRNA | 123
quantitative polymerase chain reaction evidence used in manual assertion | PomGeneExRNA | 8
reporter gene assay evidence | PomGeneExRNA | 12
reverse transcription polymerase chain reaction transcription evidence | PomGeneExRNA | 60
transcript expression level evidence | PomGeneExRNA | 16
western blot evidence used in manual assertion | PomGeneExRNA | 13
Inferred by Curator | biological_process | 1028
Inferred from Biological aspect of Ancestor | biological_process | 1205
Inferred from Direct Assay | biological_process | 636
Inferred from Electronic Annotation | biological_process | 516
Inferred from Experiment | biological_process | 388
Inferred from Expression Pattern | biological_process | 19
Inferred from Genetic Interaction | biological_process | 553
Inferred from Mutant Phenotype | biological_process | 3658
Inferred from Physical Interaction | biological_process | 69
Inferred from Sequence Model | biological_process | 162
Inferred from Sequence Orthology | biological_process | 1966
Inferred from Sequence or Structural Similarity | biological_process | 525
Non-traceable Author Statement | biological_process | 418
Traceable Author Statement | biological_process | 132
Inferred by Curator | cellular_component | 537
Inferred from Biological aspect of Ancestor | cellular_component | 892
Inferred from Direct Assay | cellular_component | 5523
Inferred from Electronic Annotation | cellular_component | 287
Inferred from Experiment | cellular_component | 321
Inferred from Genetic Interaction | cellular_component | 46
Inferred from Mutant Phenotype | cellular_component | 57
Inferred from Physical Interaction | cellular_component | 330
Inferred from Sequence Model | cellular_component | 80
Inferred from Sequence Orthology | cellular_component | 1495
Inferred from Sequence or Structural Similarity | cellular_component | 384
Inferred from high throughput direct assay | cellular_component | 6807
Non-traceable Author Statement | cellular_component | 113
Traceable Author Statement | cellular_component | 97
Non-traceable Author Statement | complementation | 1
Chromatin immunoprecipitation experiment | fission_yeast_phenotype | 1926
Chromatography evidence | fission_yeast_phenotype | 69
Co-immunoprecipitation experiment | fission_yeast_phenotype | 971
Electrophoretic mobility shift assay data | fission_yeast_phenotype | 193
Enzyme assay data | fission_yeast_phenotype | 2190
Epitope-tagged protein immunolocalization experiment data | fission_yeast_phenotype | 55
Flow cytometry data | fission_yeast_phenotype | 2161
Immunolocalization experiment data | fission_yeast_phenotype | 23
Microscopy | fission_yeast_phenotype | 37626
Northern assay evidence | fission_yeast_phenotype | 118
Other | fission_yeast_phenotype | 2004
Other direct assay | fission_yeast_phenotype | 8
Particle size and count assay | fission_yeast_phenotype | 30
Plasmid maintenance assay evidence | fission_yeast_phenotype | 80
Substance quantification evidence | fission_yeast_phenotype | 1137
Western blot assay | fission_yeast_phenotype | 4414
cell growth assay evidence | fission_yeast_phenotype | 35542
competitive growth assay evidence | fission_yeast_phenotype | 1194
experimental phenotypic evidence | fission_yeast_phenotype | 493
gel electrophoresis evidence | fission_yeast_phenotype | 2479
high throughput nucleotide sequencing assay evidence | fission_yeast_phenotype | 206
microscopy evidence used in manual assertion | fission_yeast_phenotype | 659
quantitative PCR | fission_yeast_phenotype | 880
reporter gene assay evidence | fission_yeast_phenotype | 2881
sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | fission_yeast_phenotype | 22
transcript expression level evidence | fission_yeast_phenotype | 4042
tryptic phosphopeptide mapping assay evidence used in automatic assertion | fission_yeast_phenotype | 149
western blot evidence used in manual assertion | fission_yeast_phenotype | 147
experimental evidence | gene_ex | 19962
in situ hybridization assay evidence | gene_ex | 14
mass spectrometry evidence | gene_ex | 13682
protein expression level evidence based on western blot used in manual assertion | gene_ex | 2
Inferred from Sequence or Structural Similarity | genome_org | 11
Inferred from Sequence or Structural Similarity | m_f_g | 42
Inferred from Direct Assay | misc | 1
Inferred from Mutant Phenotype | misc | 4
Inferred from Physical Interaction | misc | 2
Inferred from Sequence or Structural Similarity | misc | 1
Inferred by Curator | molecular_function | 147
Inferred from Biological aspect of Ancestor | molecular_function | 855
Inferred from Direct Assay | molecular_function | 1956
Inferred from Electronic Annotation | molecular_function | 1729
Inferred from Experiment | molecular_function | 640
Inferred from Genetic Interaction | molecular_function | 125
Inferred from Key Residues | molecular_function | 1
Inferred from Mutant Phenotype | molecular_function | 863
Inferred from Physical Interaction | molecular_function | 3142
Inferred from Sequence Model | molecular_function | 1175
Inferred from Sequence Orthology | molecular_function | 1344
Inferred from Sequence or Structural Similarity | molecular_function | 484
Inferred from high throughput direct assay | molecular_function | 17
Inferred from high throughput mutant phenotype | molecular_function | 1535
Non-traceable Author Statement | molecular_function | 175
Traceable Author Statement | molecular_function | 135
Inferred from Direct Assay | sequence | 2
Inferred from Experiment | sequence | 7
Inferred from Mutant Phenotype | sequence | 10
Inferred from Sequence or Structural Similarity | sequence | 354
Traceable Author Statement | sequence | 2
Inferred from Direct Assay | subunit_composition | 4
Inferred from Sequence or Structural Similarity | subunit_composition | 1
Inferred from Sequence or Structural Similarity | warning | 67
(128 rows)
annotation counts by evidence code and cv type, sorted by count:
ev_code | cv_name | count
----------------------------------------------------------------------------------+--------------------------+-------
Inferred from Mutant Phenotype | PSI-MOD | 1
experimental evidence | PomGeneExProt | 1
Inferred from Sequence or Structural Similarity | misc | 1
Traceable Author Statement | PSI-MOD | 1
Inferred from Direct Assay | misc | 1
Inferred from Sequence or Structural Similarity | subunit_composition | 1
differential hybridization evidence | PomGeneExRNA | 1
Non-traceable Author Statement | complementation | 1
Inferred from Key Residues | molecular_function | 1
Inferred from Direct Assay | sequence | 2
sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | PomGeneExProt | 2
Traceable Author Statement | sequence | 2
Inferred from Physical Interaction | misc | 2
Inferred from Sequence Model | PSI-MOD | 2
protein expression level evidence based on western blot used in manual assertion | gene_ex | 2
quantitative PCR | PomGeneExProt | 3
Inferred from Mutant Phenotype | misc | 4
Inferred from Direct Assay | subunit_composition | 4
northern assay evidence used in manual assertion | PomGeneExProt | 5
Traceable Author Statement | PomBase family or domain | 5
in situ hybridization evidence used in manual assertion | PomGeneExRNA | 5
Inferred from Sequence or Structural Similarity | PomBase family or domain | 6
immunofluorescence evidence | PomGeneExProt | 6
Microscopy | PomGeneExProt | 6
Inferred from Experiment | sequence | 7
Other direct assay | fission_yeast_phenotype | 8
quantitative polymerase chain reaction evidence used in manual assertion | PomGeneExRNA | 8
Inferred from Mutant Phenotype | sequence | 10
fusion protein localization evidence | PomGeneExProt | 11
Inferred from Sequence or Structural Similarity | genome_org | 11
reporter gene assay evidence | PomGeneExRNA | 12
western blot evidence used in manual assertion | PomGeneExRNA | 13
in situ hybridization assay evidence | gene_ex | 14
transcript expression level evidence | PomGeneExRNA | 16
Inferred from high throughput direct assay | molecular_function | 17
Inferred from Expression Pattern | biological_process | 19
sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | fission_yeast_phenotype | 22
Immunolocalization experiment data | fission_yeast_phenotype | 23
Particle size and count assay | fission_yeast_phenotype | 30
Inferred from Sequence or Structural Similarity | m_f_g | 42
Inferred from Genetic Interaction | cellular_component | 46
Epitope-tagged protein immunolocalization experiment data | fission_yeast_phenotype | 55
Inferred from Mutant Phenotype | cellular_component | 57
RNA protection assay evidence | PomGeneExRNA | 58
reverse transcription polymerase chain reaction transcription evidence | PomGeneExRNA | 60
Western blot evidence | PomGeneExProt | 65
Inferred from Sequence or Structural Similarity | warning | 67
Chromatography evidence | fission_yeast_phenotype | 69
Inferred from Physical Interaction | biological_process | 69
Inferred from Sequence Model | cellular_component | 80
Plasmid maintenance assay evidence | fission_yeast_phenotype | 80
Traceable Author Statement | cellular_component | 97
Inferred from Sequence or Structural Similarity | PSI-MOD | 101
Non-traceable Author Statement | cellular_component | 113
Northern assay evidence | PomGeneExRNA | 114
Northern assay evidence | fission_yeast_phenotype | 118
quantitative PCR | PomGeneExRNA | 123
Inferred from Genetic Interaction | molecular_function | 125
Traceable Author Statement | biological_process | 132
Traceable Author Statement | molecular_function | 135
reporter gene assay evidence | PomGeneExProt | 136
Inferred by Curator | molecular_function | 147
western blot evidence used in manual assertion | fission_yeast_phenotype | 147
tryptic phosphopeptide mapping assay evidence used in automatic assertion | fission_yeast_phenotype | 149
Inferred from Sequence Model | biological_process | 162
Non-traceable Author Statement | molecular_function | 175
Electrophoretic mobility shift assay data | fission_yeast_phenotype | 193
experimental evidence | PomGeneExRNA | 198
high throughput nucleotide sequencing assay evidence | fission_yeast_phenotype | 206
Inferred from Electronic Annotation | cellular_component | 287
Inferred from Experiment | cellular_component | 321
Inferred from Physical Interaction | cellular_component | 330
Inferred from Sequence or Structural Similarity | sequence | 354
Inferred from Sequence or Structural Similarity | cellular_component | 384
Inferred from Experiment | biological_process | 388
Non-traceable Author Statement | biological_process | 418
western blot evidence used in manual assertion | PomGeneExProt | 437
Inferred from Sequence or Structural Similarity | molecular_function | 484
experimental phenotypic evidence | fission_yeast_phenotype | 493
Inferred from Electronic Annotation | biological_process | 516
Inferred from Sequence or Structural Similarity | biological_process | 525
Inferred by Curator | cellular_component | 537
Inferred from Genetic Interaction | biological_process | 553
mass spectrometry evidence | PomGeneExProt | 614
Inferred from Direct Assay | biological_process | 636
Inferred from Experiment | molecular_function | 640
microscopy evidence used in manual assertion | fission_yeast_phenotype | 659
ribosome profiling evidence | PomGeneExRD | 735
northern assay evidence used in manual assertion | PomGeneExRNA | 796
Inferred from Biological aspect of Ancestor | molecular_function | 855
Inferred from Mutant Phenotype | molecular_function | 863
quantitative PCR | fission_yeast_phenotype | 880
Inferred from Biological aspect of Ancestor | cellular_component | 892
Co-immunoprecipitation experiment | fission_yeast_phenotype | 971
Inferred by Curator | biological_process | 1028
Substance quantification evidence | fission_yeast_phenotype | 1137
Inferred from Sequence Model | molecular_function | 1175
competitive growth assay evidence | fission_yeast_phenotype | 1194
Inferred from Biological aspect of Ancestor | biological_process | 1205
differential hybridization evidence | PSI-MOD | 1287
Inferred from Sequence Orthology | molecular_function | 1344
Inferred from Sequence Orthology | cellular_component | 1495
Inferred from high throughput mutant phenotype | molecular_function | 1535
Inferred from Electronic Annotation | molecular_function | 1729
Chromatin immunoprecipitation experiment | fission_yeast_phenotype | 1926
Inferred from Direct Assay | molecular_function | 1956
Inferred from Sequence Orthology | biological_process | 1966
Other | fission_yeast_phenotype | 2004
Flow cytometry data | fission_yeast_phenotype | 2161
Enzyme assay data | fission_yeast_phenotype | 2190
gel electrophoresis evidence | fission_yeast_phenotype | 2479
reporter gene assay evidence | fission_yeast_phenotype | 2881
Inferred from Physical Interaction | molecular_function | 3142
Inferred from Direct Assay | PSI-MOD | 3158
mass spectrometry evidence | PSI-MOD | 3203
expression microarray evidence | PomGeneExRNA | 3517
Inferred from Mutant Phenotype | biological_process | 3658
RNA-sequencing evidence | PomGeneExRNA | 3811
transcript expression level evidence | fission_yeast_phenotype | 4042
Western blot assay | fission_yeast_phenotype | 4414
Inferred from Direct Assay | cellular_component | 5523
Inferred from high throughput direct assay | cellular_component | 6807
experimental evidence | PSI-MOD | 8141
mass spectrometry evidence | gene_ex | 13682
experimental evidence | gene_ex | 19962
cell growth assay evidence | fission_yeast_phenotype | 35542
Microscopy | fission_yeast_phenotype | 37626
tryptic phosphopeptide mapping assay evidence used in automatic assertion | PSI-MOD | 44320
(128 rows)
annotation counts by evidence code and cv type, sorted by cv evidence code:
ev_code | cv_name | count
----------------------------------------------------------------------------------+--------------------------+-------
Chromatin immunoprecipitation experiment | fission_yeast_phenotype | 1926
Chromatography evidence | fission_yeast_phenotype | 69
Co-immunoprecipitation experiment | fission_yeast_phenotype | 971
Electrophoretic mobility shift assay data | fission_yeast_phenotype | 193
Enzyme assay data | fission_yeast_phenotype | 2190
Epitope-tagged protein immunolocalization experiment data | fission_yeast_phenotype | 55
Flow cytometry data | fission_yeast_phenotype | 2161
Immunolocalization experiment data | fission_yeast_phenotype | 23
Inferred by Curator | biological_process | 1028
Inferred by Curator | cellular_component | 537
Inferred by Curator | molecular_function | 147
Inferred from Biological aspect of Ancestor | biological_process | 1205
Inferred from Biological aspect of Ancestor | cellular_component | 892
Inferred from Biological aspect of Ancestor | molecular_function | 855
Inferred from Direct Assay | PSI-MOD | 3158
Inferred from Direct Assay | biological_process | 636
Inferred from Direct Assay | cellular_component | 5523
Inferred from Direct Assay | misc | 1
Inferred from Direct Assay | molecular_function | 1956
Inferred from Direct Assay | sequence | 2
Inferred from Direct Assay | subunit_composition | 4
Inferred from Electronic Annotation | biological_process | 516
Inferred from Electronic Annotation | cellular_component | 287
Inferred from Electronic Annotation | molecular_function | 1729
Inferred from Experiment | biological_process | 388
Inferred from Experiment | cellular_component | 321
Inferred from Experiment | molecular_function | 640
Inferred from Experiment | sequence | 7
Inferred from Expression Pattern | biological_process | 19
Inferred from Genetic Interaction | biological_process | 553
Inferred from Genetic Interaction | cellular_component | 46
Inferred from Genetic Interaction | molecular_function | 125
Inferred from Key Residues | molecular_function | 1
Inferred from Mutant Phenotype | PSI-MOD | 1
Inferred from Mutant Phenotype | biological_process | 3658
Inferred from Mutant Phenotype | cellular_component | 57
Inferred from Mutant Phenotype | misc | 4
Inferred from Mutant Phenotype | molecular_function | 863
Inferred from Mutant Phenotype | sequence | 10
Inferred from Physical Interaction | biological_process | 69
Inferred from Physical Interaction | cellular_component | 330
Inferred from Physical Interaction | misc | 2
Inferred from Physical Interaction | molecular_function | 3142
Inferred from Sequence Model | PSI-MOD | 2
Inferred from Sequence Model | biological_process | 162
Inferred from Sequence Model | cellular_component | 80
Inferred from Sequence Model | molecular_function | 1175
Inferred from Sequence Orthology | biological_process | 1966
Inferred from Sequence Orthology | cellular_component | 1495
Inferred from Sequence Orthology | molecular_function | 1344
Inferred from Sequence or Structural Similarity | PSI-MOD | 101
Inferred from Sequence or Structural Similarity | PomBase family or domain | 6
Inferred from Sequence or Structural Similarity | biological_process | 525
Inferred from Sequence or Structural Similarity | cellular_component | 384
Inferred from Sequence or Structural Similarity | genome_org | 11
Inferred from Sequence or Structural Similarity | m_f_g | 42
Inferred from Sequence or Structural Similarity | misc | 1
Inferred from Sequence or Structural Similarity | molecular_function | 484
Inferred from Sequence or Structural Similarity | sequence | 354
Inferred from Sequence or Structural Similarity | subunit_composition | 1
Inferred from Sequence or Structural Similarity | warning | 67
Inferred from high throughput direct assay | cellular_component | 6807
Inferred from high throughput direct assay | molecular_function | 17
Inferred from high throughput mutant phenotype | molecular_function | 1535
Microscopy | PomGeneExProt | 6
Microscopy | fission_yeast_phenotype | 37626
Non-traceable Author Statement | biological_process | 418
Non-traceable Author Statement | cellular_component | 113
Non-traceable Author Statement | complementation | 1
Non-traceable Author Statement | molecular_function | 175
Northern assay evidence | PomGeneExRNA | 114
Northern assay evidence | fission_yeast_phenotype | 118
Other | fission_yeast_phenotype | 2004
Other direct assay | fission_yeast_phenotype | 8
Particle size and count assay | fission_yeast_phenotype | 30
Plasmid maintenance assay evidence | fission_yeast_phenotype | 80
RNA protection assay evidence | PomGeneExRNA | 58
RNA-sequencing evidence | PomGeneExRNA | 3811
Substance quantification evidence | fission_yeast_phenotype | 1137
Traceable Author Statement | PSI-MOD | 1
Traceable Author Statement | PomBase family or domain | 5
Traceable Author Statement | biological_process | 132
Traceable Author Statement | cellular_component | 97
Traceable Author Statement | molecular_function | 135
Traceable Author Statement | sequence | 2
Western blot assay | fission_yeast_phenotype | 4414
Western blot evidence | PomGeneExProt | 65
cell growth assay evidence | fission_yeast_phenotype | 35542
competitive growth assay evidence | fission_yeast_phenotype | 1194
differential hybridization evidence | PSI-MOD | 1287
differential hybridization evidence | PomGeneExRNA | 1
experimental evidence | PSI-MOD | 8141
experimental evidence | PomGeneExProt | 1
experimental evidence | PomGeneExRNA | 198
experimental evidence | gene_ex | 19962
experimental phenotypic evidence | fission_yeast_phenotype | 493
expression microarray evidence | PomGeneExRNA | 3517
fusion protein localization evidence | PomGeneExProt | 11
gel electrophoresis evidence | fission_yeast_phenotype | 2479
high throughput nucleotide sequencing assay evidence | fission_yeast_phenotype | 206
immunofluorescence evidence | PomGeneExProt | 6
in situ hybridization assay evidence | gene_ex | 14
in situ hybridization evidence used in manual assertion | PomGeneExRNA | 5
mass spectrometry evidence | PSI-MOD | 3203
mass spectrometry evidence | PomGeneExProt | 614
mass spectrometry evidence | gene_ex | 13682
microscopy evidence used in manual assertion | fission_yeast_phenotype | 659
northern assay evidence used in manual assertion | PomGeneExProt | 5
northern assay evidence used in manual assertion | PomGeneExRNA | 796
protein expression level evidence based on western blot used in manual assertion | gene_ex | 2
quantitative PCR | PomGeneExProt | 3
quantitative PCR | PomGeneExRNA | 123
quantitative PCR | fission_yeast_phenotype | 880
quantitative polymerase chain reaction evidence used in manual assertion | PomGeneExRNA | 8
reporter gene assay evidence | PomGeneExProt | 136
reporter gene assay evidence | PomGeneExRNA | 12
reporter gene assay evidence | fission_yeast_phenotype | 2881
reverse transcription polymerase chain reaction transcription evidence | PomGeneExRNA | 60
ribosome profiling evidence | PomGeneExRD | 735
sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | PomGeneExProt | 2
sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | fission_yeast_phenotype | 22
transcript expression level evidence | PomGeneExRNA | 16
transcript expression level evidence | fission_yeast_phenotype | 4042
tryptic phosphopeptide mapping assay evidence used in automatic assertion | PSI-MOD | 44320
tryptic phosphopeptide mapping assay evidence used in automatic assertion | fission_yeast_phenotype | 149
western blot evidence used in manual assertion | PomGeneExProt | 437
western blot evidence used in manual assertion | PomGeneExRNA | 13
western blot evidence used in manual assertion | fission_yeast_phenotype | 147
(128 rows)
total:
count
--------
363551
(1 row)
counts of annotation from Canto, by type:
count | cv_name
-------+------------------------------------
7 | sequence
50 | PomGeneExProt
174 | PomGeneExRNA
2229 | PSI-MOD
4222 | biological_process
4395 | molecular_function
5175 | cellular_component
34883 | PomBase annotation extension terms
68105 | fission_yeast_phenotype
(9 rows)
total
-------
84357
(1 row)