counts of all annotation by type:
count | cv_name
--------+--------------------------------------
6 | external_link
22 | ex_tools
27 | cat_act
27 | pathway
76 | m_f_g
191 | subunit_composition
202 | genome_org
417 | misc
456 | complementation
730 | PomGeneExRD
821 | EC numbers
882 | sequence
985 | name_description
1292 | PomGeneExProt
1695 | warning
1867 | PomBase family or domain
4057 | kegg_pombe_pathway
4556 | mondo
5143 | PomBase gene characterisation status
8597 | PomGeneExRNA
11316 | biological_process
14484 | molecular_function
17014 | cellular_component
25209 | species_dist
33656 | gene_ex
60276 | PSI-MOD
67992 | PomBase gene products
102230 | fission_yeast_phenotype
(28 rows)
annotation counts by evidence code and cv type, sorted by cv name:
ev_code | cv_name | count
----------------------------------------------------------------------------------+--------------------------+-------
Inferred from Direct Assay | PSI-MOD | 3163
Inferred from Mutant Phenotype | PSI-MOD | 1
Inferred from Sequence Model | PSI-MOD | 2
Inferred from Sequence or Structural Similarity | PSI-MOD | 101
Traceable Author Statement | PSI-MOD | 1
differential hybridization evidence | PSI-MOD | 1287
experimental evidence | PSI-MOD | 8141
mass spectrometry evidence | PSI-MOD | 3203
tryptic phosphopeptide mapping assay evidence used in automatic assertion | PSI-MOD | 44320
Inferred from Sequence or Structural Similarity | PomBase family or domain | 6
Traceable Author Statement | PomBase family or domain | 5
Western blot evidence | PomGeneExProt | 65
experimental evidence | PomGeneExProt | 1
fusion protein localization evidence | PomGeneExProt | 11
immunofluorescence evidence | PomGeneExProt | 6
mass spectrometry evidence | PomGeneExProt | 614
microscopy evidence | PomGeneExProt | 6
northern assay evidence used in manual assertion | PomGeneExProt | 5
quantitative PCR | PomGeneExProt | 3
reporter gene assay evidence | PomGeneExProt | 136
sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | PomGeneExProt | 2
western blot evidence used in manual assertion | PomGeneExProt | 437
ribosome profiling evidence | PomGeneExRD | 730
Northern assay evidence | PomGeneExRNA | 114
RNA protection assay evidence | PomGeneExRNA | 58
RNA-sequencing evidence | PomGeneExRNA | 3660
differential hybridization evidence | PomGeneExRNA | 1
experimental evidence | PomGeneExRNA | 198
expression microarray evidence | PomGeneExRNA | 3517
in situ hybridization evidence used in manual assertion | PomGeneExRNA | 5
northern assay evidence used in manual assertion | PomGeneExRNA | 796
quantitative PCR | PomGeneExRNA | 123
quantitative polymerase chain reaction evidence used in manual assertion | PomGeneExRNA | 8
reporter gene assay evidence | PomGeneExRNA | 12
reverse transcription polymerase chain reaction transcription evidence | PomGeneExRNA | 60
transcript expression level evidence | PomGeneExRNA | 16
western blot evidence used in manual assertion | PomGeneExRNA | 13
Inferred by Curator | biological_process | 1004
Inferred from Biological aspect of Ancestor | biological_process | 1205
Inferred from Direct Assay | biological_process | 633
Inferred from Electronic Annotation | biological_process | 607
Inferred from Experiment | biological_process | 428
Inferred from Expression Pattern | biological_process | 19
Inferred from Genetic Interaction | biological_process | 548
Inferred from Mutant Phenotype | biological_process | 3653
Inferred from Physical Interaction | biological_process | 69
Inferred from Sequence Model | biological_process | 141
Inferred from Sequence Orthology | biological_process | 1929
Inferred from Sequence or Structural Similarity | biological_process | 520
Non-traceable Author Statement | biological_process | 420
Traceable Author Statement | biological_process | 140
Inferred by Curator | cellular_component | 537
Inferred from Biological aspect of Ancestor | cellular_component | 839
Inferred from Direct Assay | cellular_component | 5604
Inferred from Electronic Annotation | cellular_component | 293
Inferred from Experiment | cellular_component | 368
Inferred from Genetic Interaction | cellular_component | 46
Inferred from Mutant Phenotype | cellular_component | 57
Inferred from Physical Interaction | cellular_component | 331
Inferred from Sequence Model | cellular_component | 83
Inferred from Sequence Orthology | cellular_component | 1483
Inferred from Sequence or Structural Similarity | cellular_component | 381
Inferred from high throughput direct assay | cellular_component | 6789
Non-traceable Author Statement | cellular_component | 112
Traceable Author Statement | cellular_component | 91
Non-traceable Author Statement | complementation | 1
Chromatin immunoprecipitation experiment | fission_yeast_phenotype | 1936
Chromatography evidence | fission_yeast_phenotype | 69
Co-immunoprecipitation experiment | fission_yeast_phenotype | 980
Electrophoretic mobility shift assay data | fission_yeast_phenotype | 202
Enzyme assay data | fission_yeast_phenotype | 2201
Epitope-tagged protein immunolocalization experiment data | fission_yeast_phenotype | 55
Flow cytometry data | fission_yeast_phenotype | 2160
Immunolocalization experiment data | fission_yeast_phenotype | 23
Microscopy | fission_yeast_phenotype | 5364
Northern assay evidence | fission_yeast_phenotype | 118
Other | fission_yeast_phenotype | 2043
Other direct assay | fission_yeast_phenotype | 8
Particle size and count assay | fission_yeast_phenotype | 30
Plasmid maintenance assay evidence | fission_yeast_phenotype | 80
Substance quantification | fission_yeast_phenotype | 1138
Western blot assay | fission_yeast_phenotype | 4475
cell growth assay evidence | fission_yeast_phenotype | 35722
competitive growth assay evidence | fission_yeast_phenotype | 1194
experimental phenotypic evidence | fission_yeast_phenotype | 493
gel electrophoresis evidence | fission_yeast_phenotype | 2487
high throughput nucleotide sequencing assay evidence | fission_yeast_phenotype | 206
microscopy evidence | fission_yeast_phenotype | 32362
microscopy evidence used in manual assertion | fission_yeast_phenotype | 659
quantitative PCR | fission_yeast_phenotype | 881
reporter gene assay evidence | fission_yeast_phenotype | 2896
sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | fission_yeast_phenotype | 22
transcript expression level evidence | fission_yeast_phenotype | 4130
tryptic phosphopeptide mapping assay evidence used in automatic assertion | fission_yeast_phenotype | 149
western blot evidence used in manual assertion | fission_yeast_phenotype | 147
experimental evidence | gene_ex | 19958
in situ hybridization assay evidence | gene_ex | 14
mass spectrometry evidence | gene_ex | 13682
protein expression level evidence based on western blot used in manual assertion | gene_ex | 2
Inferred from Sequence or Structural Similarity | genome_org | 11
Inferred from Sequence or Structural Similarity | m_f_g | 41
Inferred from Direct Assay | misc | 1
Inferred from Mutant Phenotype | misc | 4
Inferred from Physical Interaction | misc | 2
Inferred from Sequence or Structural Similarity | misc | 1
Inferred by Curator | molecular_function | 146
Inferred from Biological aspect of Ancestor | molecular_function | 845
Inferred from Direct Assay | molecular_function | 1980
Inferred from Electronic Annotation | molecular_function | 1725
Inferred from Experiment | molecular_function | 674
Inferred from Genetic Interaction | molecular_function | 125
Inferred from Key Residues | molecular_function | 1
Inferred from Mutant Phenotype | molecular_function | 865
Inferred from Physical Interaction | molecular_function | 3255
Inferred from Sequence Model | molecular_function | 1176
Inferred from Sequence Orthology | molecular_function | 1341
Inferred from Sequence or Structural Similarity | molecular_function | 481
Inferred from high throughput direct assay | molecular_function | 17
Inferred from high throughput mutant phenotype | molecular_function | 1535
Non-traceable Author Statement | molecular_function | 174
Traceable Author Statement | molecular_function | 144
Inferred from Direct Assay | sequence | 2
Inferred from Experiment | sequence | 7
Inferred from Mutant Phenotype | sequence | 10
Inferred from Sequence or Structural Similarity | sequence | 354
Traceable Author Statement | sequence | 2
Inferred from Direct Assay | subunit_composition | 4
Inferred from Sequence or Structural Similarity | subunit_composition | 1
Inferred from Sequence or Structural Similarity | warning | 66
(129 rows)
annotation counts by evidence code and cv type, sorted by count:
ev_code | cv_name | count
----------------------------------------------------------------------------------+--------------------------+-------
Inferred from Direct Assay | misc | 1
Inferred from Mutant Phenotype | PSI-MOD | 1
Inferred from Sequence or Structural Similarity | subunit_composition | 1
Traceable Author Statement | PSI-MOD | 1
Inferred from Key Residues | molecular_function | 1
Inferred from Sequence or Structural Similarity | misc | 1
differential hybridization evidence | PomGeneExRNA | 1
experimental evidence | PomGeneExProt | 1
Non-traceable Author Statement | complementation | 1
Inferred from Physical Interaction | misc | 2
Inferred from Direct Assay | sequence | 2
sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | PomGeneExProt | 2
protein expression level evidence based on western blot used in manual assertion | gene_ex | 2
Inferred from Sequence Model | PSI-MOD | 2
Traceable Author Statement | sequence | 2
quantitative PCR | PomGeneExProt | 3
Inferred from Mutant Phenotype | misc | 4
Inferred from Direct Assay | subunit_composition | 4
in situ hybridization evidence used in manual assertion | PomGeneExRNA | 5
northern assay evidence used in manual assertion | PomGeneExProt | 5
Traceable Author Statement | PomBase family or domain | 5
immunofluorescence evidence | PomGeneExProt | 6
Inferred from Sequence or Structural Similarity | PomBase family or domain | 6
microscopy evidence | PomGeneExProt | 6
Inferred from Experiment | sequence | 7
Other direct assay | fission_yeast_phenotype | 8
quantitative polymerase chain reaction evidence used in manual assertion | PomGeneExRNA | 8
Inferred from Mutant Phenotype | sequence | 10
Inferred from Sequence or Structural Similarity | genome_org | 11
fusion protein localization evidence | PomGeneExProt | 11
reporter gene assay evidence | PomGeneExRNA | 12
western blot evidence used in manual assertion | PomGeneExRNA | 13
in situ hybridization assay evidence | gene_ex | 14
transcript expression level evidence | PomGeneExRNA | 16
Inferred from high throughput direct assay | molecular_function | 17
Inferred from Expression Pattern | biological_process | 19
sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | fission_yeast_phenotype | 22
Immunolocalization experiment data | fission_yeast_phenotype | 23
Particle size and count assay | fission_yeast_phenotype | 30
Inferred from Sequence or Structural Similarity | m_f_g | 41
Inferred from Genetic Interaction | cellular_component | 46
Epitope-tagged protein immunolocalization experiment data | fission_yeast_phenotype | 55
Inferred from Mutant Phenotype | cellular_component | 57
RNA protection assay evidence | PomGeneExRNA | 58
reverse transcription polymerase chain reaction transcription evidence | PomGeneExRNA | 60
Western blot evidence | PomGeneExProt | 65
Inferred from Sequence or Structural Similarity | warning | 66
Chromatography evidence | fission_yeast_phenotype | 69
Inferred from Physical Interaction | biological_process | 69
Plasmid maintenance assay evidence | fission_yeast_phenotype | 80
Inferred from Sequence Model | cellular_component | 83
Traceable Author Statement | cellular_component | 91
Inferred from Sequence or Structural Similarity | PSI-MOD | 101
Non-traceable Author Statement | cellular_component | 112
Northern assay evidence | PomGeneExRNA | 114
Northern assay evidence | fission_yeast_phenotype | 118
quantitative PCR | PomGeneExRNA | 123
Inferred from Genetic Interaction | molecular_function | 125
reporter gene assay evidence | PomGeneExProt | 136
Traceable Author Statement | biological_process | 140
Inferred from Sequence Model | biological_process | 141
Traceable Author Statement | molecular_function | 144
Inferred by Curator | molecular_function | 146
western blot evidence used in manual assertion | fission_yeast_phenotype | 147
tryptic phosphopeptide mapping assay evidence used in automatic assertion | fission_yeast_phenotype | 149
Non-traceable Author Statement | molecular_function | 174
experimental evidence | PomGeneExRNA | 198
Electrophoretic mobility shift assay data | fission_yeast_phenotype | 202
high throughput nucleotide sequencing assay evidence | fission_yeast_phenotype | 206
Inferred from Electronic Annotation | cellular_component | 293
Inferred from Physical Interaction | cellular_component | 331
Inferred from Sequence or Structural Similarity | sequence | 354
Inferred from Experiment | cellular_component | 368
Inferred from Sequence or Structural Similarity | cellular_component | 381
Non-traceable Author Statement | biological_process | 420
Inferred from Experiment | biological_process | 428
western blot evidence used in manual assertion | PomGeneExProt | 437
Inferred from Sequence or Structural Similarity | molecular_function | 481
experimental phenotypic evidence | fission_yeast_phenotype | 493
Inferred from Sequence or Structural Similarity | biological_process | 520
Inferred by Curator | cellular_component | 537
Inferred from Genetic Interaction | biological_process | 548
Inferred from Electronic Annotation | biological_process | 607
mass spectrometry evidence | PomGeneExProt | 614
Inferred from Direct Assay | biological_process | 633
microscopy evidence used in manual assertion | fission_yeast_phenotype | 659
Inferred from Experiment | molecular_function | 674
ribosome profiling evidence | PomGeneExRD | 730
northern assay evidence used in manual assertion | PomGeneExRNA | 796
Inferred from Biological aspect of Ancestor | cellular_component | 839
Inferred from Biological aspect of Ancestor | molecular_function | 845
Inferred from Mutant Phenotype | molecular_function | 865
quantitative PCR | fission_yeast_phenotype | 881
Co-immunoprecipitation experiment | fission_yeast_phenotype | 980
Inferred by Curator | biological_process | 1004
Substance quantification | fission_yeast_phenotype | 1138
Inferred from Sequence Model | molecular_function | 1176
competitive growth assay evidence | fission_yeast_phenotype | 1194
Inferred from Biological aspect of Ancestor | biological_process | 1205
differential hybridization evidence | PSI-MOD | 1287
Inferred from Sequence Orthology | molecular_function | 1341
Inferred from Sequence Orthology | cellular_component | 1483
Inferred from high throughput mutant phenotype | molecular_function | 1535
Inferred from Electronic Annotation | molecular_function | 1725
Inferred from Sequence Orthology | biological_process | 1929
Chromatin immunoprecipitation experiment | fission_yeast_phenotype | 1936
Inferred from Direct Assay | molecular_function | 1980
Other | fission_yeast_phenotype | 2043
Flow cytometry data | fission_yeast_phenotype | 2160
Enzyme assay data | fission_yeast_phenotype | 2201
gel electrophoresis evidence | fission_yeast_phenotype | 2487
reporter gene assay evidence | fission_yeast_phenotype | 2896
Inferred from Direct Assay | PSI-MOD | 3163
mass spectrometry evidence | PSI-MOD | 3203
Inferred from Physical Interaction | molecular_function | 3255
expression microarray evidence | PomGeneExRNA | 3517
Inferred from Mutant Phenotype | biological_process | 3653
RNA-sequencing evidence | PomGeneExRNA | 3660
transcript expression level evidence | fission_yeast_phenotype | 4130
Western blot assay | fission_yeast_phenotype | 4475
Microscopy | fission_yeast_phenotype | 5364
Inferred from Direct Assay | cellular_component | 5604
Inferred from high throughput direct assay | cellular_component | 6789
experimental evidence | PSI-MOD | 8141
mass spectrometry evidence | gene_ex | 13682
experimental evidence | gene_ex | 19958
microscopy evidence | fission_yeast_phenotype | 32362
cell growth assay evidence | fission_yeast_phenotype | 35722
tryptic phosphopeptide mapping assay evidence used in automatic assertion | PSI-MOD | 44320
(129 rows)
annotation counts by evidence code and cv type, sorted by cv evidence code:
ev_code | cv_name | count
----------------------------------------------------------------------------------+--------------------------+-------
Chromatin immunoprecipitation experiment | fission_yeast_phenotype | 1936
Chromatography evidence | fission_yeast_phenotype | 69
Co-immunoprecipitation experiment | fission_yeast_phenotype | 980
Electrophoretic mobility shift assay data | fission_yeast_phenotype | 202
Enzyme assay data | fission_yeast_phenotype | 2201
Epitope-tagged protein immunolocalization experiment data | fission_yeast_phenotype | 55
Flow cytometry data | fission_yeast_phenotype | 2160
Immunolocalization experiment data | fission_yeast_phenotype | 23
Inferred by Curator | biological_process | 1004
Inferred by Curator | cellular_component | 537
Inferred by Curator | molecular_function | 146
Inferred from Biological aspect of Ancestor | biological_process | 1205
Inferred from Biological aspect of Ancestor | cellular_component | 839
Inferred from Biological aspect of Ancestor | molecular_function | 845
Inferred from Direct Assay | PSI-MOD | 3163
Inferred from Direct Assay | biological_process | 633
Inferred from Direct Assay | cellular_component | 5604
Inferred from Direct Assay | misc | 1
Inferred from Direct Assay | molecular_function | 1980
Inferred from Direct Assay | sequence | 2
Inferred from Direct Assay | subunit_composition | 4
Inferred from Electronic Annotation | biological_process | 607
Inferred from Electronic Annotation | cellular_component | 293
Inferred from Electronic Annotation | molecular_function | 1725
Inferred from Experiment | biological_process | 428
Inferred from Experiment | cellular_component | 368
Inferred from Experiment | molecular_function | 674
Inferred from Experiment | sequence | 7
Inferred from Expression Pattern | biological_process | 19
Inferred from Genetic Interaction | biological_process | 548
Inferred from Genetic Interaction | cellular_component | 46
Inferred from Genetic Interaction | molecular_function | 125
Inferred from Key Residues | molecular_function | 1
Inferred from Mutant Phenotype | PSI-MOD | 1
Inferred from Mutant Phenotype | biological_process | 3653
Inferred from Mutant Phenotype | cellular_component | 57
Inferred from Mutant Phenotype | misc | 4
Inferred from Mutant Phenotype | molecular_function | 865
Inferred from Mutant Phenotype | sequence | 10
Inferred from Physical Interaction | biological_process | 69
Inferred from Physical Interaction | cellular_component | 331
Inferred from Physical Interaction | misc | 2
Inferred from Physical Interaction | molecular_function | 3255
Inferred from Sequence Model | PSI-MOD | 2
Inferred from Sequence Model | biological_process | 141
Inferred from Sequence Model | cellular_component | 83
Inferred from Sequence Model | molecular_function | 1176
Inferred from Sequence Orthology | biological_process | 1929
Inferred from Sequence Orthology | cellular_component | 1483
Inferred from Sequence Orthology | molecular_function | 1341
Inferred from Sequence or Structural Similarity | PSI-MOD | 101
Inferred from Sequence or Structural Similarity | PomBase family or domain | 6
Inferred from Sequence or Structural Similarity | biological_process | 520
Inferred from Sequence or Structural Similarity | cellular_component | 381
Inferred from Sequence or Structural Similarity | genome_org | 11
Inferred from Sequence or Structural Similarity | m_f_g | 41
Inferred from Sequence or Structural Similarity | misc | 1
Inferred from Sequence or Structural Similarity | molecular_function | 481
Inferred from Sequence or Structural Similarity | sequence | 354
Inferred from Sequence or Structural Similarity | subunit_composition | 1
Inferred from Sequence or Structural Similarity | warning | 66
Inferred from high throughput direct assay | cellular_component | 6789
Inferred from high throughput direct assay | molecular_function | 17
Inferred from high throughput mutant phenotype | molecular_function | 1535
Microscopy | fission_yeast_phenotype | 5364
Non-traceable Author Statement | biological_process | 420
Non-traceable Author Statement | cellular_component | 112
Non-traceable Author Statement | complementation | 1
Non-traceable Author Statement | molecular_function | 174
Northern assay evidence | PomGeneExRNA | 114
Northern assay evidence | fission_yeast_phenotype | 118
Other | fission_yeast_phenotype | 2043
Other direct assay | fission_yeast_phenotype | 8
Particle size and count assay | fission_yeast_phenotype | 30
Plasmid maintenance assay evidence | fission_yeast_phenotype | 80
RNA protection assay evidence | PomGeneExRNA | 58
RNA-sequencing evidence | PomGeneExRNA | 3660
Substance quantification | fission_yeast_phenotype | 1138
Traceable Author Statement | PSI-MOD | 1
Traceable Author Statement | PomBase family or domain | 5
Traceable Author Statement | biological_process | 140
Traceable Author Statement | cellular_component | 91
Traceable Author Statement | molecular_function | 144
Traceable Author Statement | sequence | 2
Western blot assay | fission_yeast_phenotype | 4475
Western blot evidence | PomGeneExProt | 65
cell growth assay evidence | fission_yeast_phenotype | 35722
competitive growth assay evidence | fission_yeast_phenotype | 1194
differential hybridization evidence | PSI-MOD | 1287
differential hybridization evidence | PomGeneExRNA | 1
experimental evidence | PSI-MOD | 8141
experimental evidence | PomGeneExProt | 1
experimental evidence | PomGeneExRNA | 198
experimental evidence | gene_ex | 19958
experimental phenotypic evidence | fission_yeast_phenotype | 493
expression microarray evidence | PomGeneExRNA | 3517
fusion protein localization evidence | PomGeneExProt | 11
gel electrophoresis evidence | fission_yeast_phenotype | 2487
high throughput nucleotide sequencing assay evidence | fission_yeast_phenotype | 206
immunofluorescence evidence | PomGeneExProt | 6
in situ hybridization assay evidence | gene_ex | 14
in situ hybridization evidence used in manual assertion | PomGeneExRNA | 5
mass spectrometry evidence | PSI-MOD | 3203
mass spectrometry evidence | PomGeneExProt | 614
mass spectrometry evidence | gene_ex | 13682
microscopy evidence | PomGeneExProt | 6
microscopy evidence | fission_yeast_phenotype | 32362
microscopy evidence used in manual assertion | fission_yeast_phenotype | 659
northern assay evidence used in manual assertion | PomGeneExProt | 5
northern assay evidence used in manual assertion | PomGeneExRNA | 796
protein expression level evidence based on western blot used in manual assertion | gene_ex | 2
quantitative PCR | PomGeneExProt | 3
quantitative PCR | PomGeneExRNA | 123
quantitative PCR | fission_yeast_phenotype | 881
quantitative polymerase chain reaction evidence used in manual assertion | PomGeneExRNA | 8
reporter gene assay evidence | PomGeneExProt | 136
reporter gene assay evidence | PomGeneExRNA | 12
reporter gene assay evidence | fission_yeast_phenotype | 2896
reverse transcription polymerase chain reaction transcription evidence | PomGeneExRNA | 60
ribosome profiling evidence | PomGeneExRD | 730
sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | PomGeneExProt | 2
sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | fission_yeast_phenotype | 22
transcript expression level evidence | PomGeneExRNA | 16
transcript expression level evidence | fission_yeast_phenotype | 4130
tryptic phosphopeptide mapping assay evidence used in automatic assertion | PSI-MOD | 44320
tryptic phosphopeptide mapping assay evidence used in automatic assertion | fission_yeast_phenotype | 149
western blot evidence used in manual assertion | PomGeneExProt | 437
western blot evidence used in manual assertion | PomGeneExRNA | 13
western blot evidence used in manual assertion | fission_yeast_phenotype | 147
(129 rows)
total:
count
--------
364226
(1 row)
counts of annotation from Canto, by type:
count | cv_name
-------+------------------------------------
7 | sequence
50 | PomGeneExProt
174 | PomGeneExRNA
2234 | PSI-MOD
4254 | biological_process
4568 | molecular_function
5304 | cellular_component
35253 | PomBase annotation extension terms
68697 | fission_yeast_phenotype
(9 rows)
total
-------
85288
(1 row)