counts of all annotation by type: count | cv_name --------+-------------------------------------- 6 | external_link 22 | ex_tools 27 | cat_act 27 | pathway 76 | m_f_g 163 | genome_org 191 | subunit_composition 412 | EC numbers 417 | misc 456 | complementation 730 | PomGeneExRD 882 | sequence 987 | name_description 1293 | PomGeneExProt 1696 | warning 1869 | PomBase family or domain 4065 | kegg_pombe_pathway 4554 | mondo 5143 | PomBase gene characterisation status 8601 | PomGeneExRNA 11207 | biological_process 14495 | molecular_function 17012 | cellular_component 25213 | species_dist 33656 | gene_ex 60309 | PSI-MOD 68002 | PomBase gene products 108373 | fission_yeast_phenotype (28 rows) annotation counts by evidence code and cv type, sorted by cv name: ev_code | cv_name | count ----------------------------------------------------------------------------------+--------------------------+------- Inferred from Direct Assay | PSI-MOD | 3196 Inferred from Mutant Phenotype | PSI-MOD | 1 Inferred from Sequence Model | PSI-MOD | 2 Inferred from Sequence or Structural Similarity | PSI-MOD | 101 Traceable Author Statement | PSI-MOD | 1 differential hybridization evidence | PSI-MOD | 1287 experimental evidence | PSI-MOD | 8141 mass spectrometry evidence | PSI-MOD | 3203 tryptic phosphopeptide mapping assay evidence used in automatic assertion | PSI-MOD | 44320 Inferred from Sequence or Structural Similarity | PomBase family or domain | 6 Traceable Author Statement | PomBase family or domain | 5 Western blot evidence | PomGeneExProt | 66 experimental evidence | PomGeneExProt | 1 fusion protein localization evidence | PomGeneExProt | 11 immunofluorescence evidence | PomGeneExProt | 6 mass spectrometry evidence | PomGeneExProt | 614 microscopy evidence | PomGeneExProt | 6 northern assay evidence used in manual assertion | PomGeneExProt | 5 quantitative PCR | PomGeneExProt | 3 reporter gene assay evidence | PomGeneExProt | 136 sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | PomGeneExProt | 2 western blot evidence used in manual assertion | PomGeneExProt | 437 ribosome profiling evidence | PomGeneExRD | 730 Northern assay evidence | PomGeneExRNA | 114 RNA protection assay evidence | PomGeneExRNA | 58 RNA-sequencing evidence | PomGeneExRNA | 3660 differential hybridization evidence | PomGeneExRNA | 1 experimental evidence | PomGeneExRNA | 198 expression microarray evidence | PomGeneExRNA | 3519 in situ hybridization evidence used in manual assertion | PomGeneExRNA | 5 northern assay evidence used in manual assertion | PomGeneExRNA | 796 quantitative PCR | PomGeneExRNA | 124 quantitative polymerase chain reaction evidence used in manual assertion | PomGeneExRNA | 8 reporter gene assay evidence | PomGeneExRNA | 12 reverse transcription polymerase chain reaction transcription evidence | PomGeneExRNA | 60 transcript expression level evidence | PomGeneExRNA | 16 western blot evidence used in manual assertion | PomGeneExRNA | 13 Inferred by Curator | biological_process | 1037 Inferred from Biological aspect of Ancestor | biological_process | 1180 Inferred from Direct Assay | biological_process | 629 Inferred from Electronic Annotation | biological_process | 549 Inferred from Experiment | biological_process | 418 Inferred from Expression Pattern | biological_process | 19 Inferred from Genetic Interaction | biological_process | 539 Inferred from Mutant Phenotype | biological_process | 3654 Inferred from Physical Interaction | biological_process | 68 Inferred from Sequence Model | biological_process | 159 Inferred from Sequence Orthology | biological_process | 1904 Inferred from Sequence or Structural Similarity | biological_process | 516 Non-traceable Author Statement | biological_process | 394 Traceable Author Statement | biological_process | 141 Inferred by Curator | cellular_component | 536 Inferred from Biological aspect of Ancestor | cellular_component | 831 Inferred from Direct Assay | cellular_component | 5602 Inferred from Electronic Annotation | cellular_component | 296 Inferred from Experiment | cellular_component | 381 Inferred from Genetic Interaction | cellular_component | 46 Inferred from Mutant Phenotype | cellular_component | 57 Inferred from Physical Interaction | cellular_component | 331 Inferred from Sequence Model | cellular_component | 83 Inferred from Sequence Orthology | cellular_component | 1475 Inferred from Sequence or Structural Similarity | cellular_component | 380 Inferred from high throughput direct assay | cellular_component | 6789 Non-traceable Author Statement | cellular_component | 114 Traceable Author Statement | cellular_component | 91 Non-traceable Author Statement | complementation | 1 Chromatin immunoprecipitation experiment | fission_yeast_phenotype | 1948 Chromatography evidence | fission_yeast_phenotype | 69 Co-immunoprecipitation experiment | fission_yeast_phenotype | 996 Electrophoretic mobility shift assay data | fission_yeast_phenotype | 203 Enzyme assay data | fission_yeast_phenotype | 2198 Epitope-tagged protein immunolocalization experiment data | fission_yeast_phenotype | 55 Flow cytometry data | fission_yeast_phenotype | 2164 Immunolocalization experiment data | fission_yeast_phenotype | 23 Microscopy | fission_yeast_phenotype | 16628 Northern assay evidence | fission_yeast_phenotype | 118 Other | fission_yeast_phenotype | 2063 Other direct assay | fission_yeast_phenotype | 8 Particle size and count assay | fission_yeast_phenotype | 33 Plasmid maintenance assay evidence | fission_yeast_phenotype | 80 Substance quantification evidence | fission_yeast_phenotype | 1144 Western blot assay | fission_yeast_phenotype | 4482 cell growth assay evidence | fission_yeast_phenotype | 39424 cell viability assay evidence | fission_yeast_phenotype | 2163 competitive growth assay evidence | fission_yeast_phenotype | 1194 experimental phenotypic evidence | fission_yeast_phenotype | 493 gel electrophoresis evidence | fission_yeast_phenotype | 2485 high throughput nucleotide sequencing assay evidence | fission_yeast_phenotype | 206 microscopy evidence | fission_yeast_phenotype | 21227 microscopy evidence used in manual assertion | fission_yeast_phenotype | 659 quantitative PCR | fission_yeast_phenotype | 934 reporter gene assay evidence | fission_yeast_phenotype | 2924 sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | fission_yeast_phenotype | 22 transcript expression level evidence | fission_yeast_phenotype | 4134 tryptic phosphopeptide mapping assay evidence used in automatic assertion | fission_yeast_phenotype | 149 western blot evidence used in manual assertion | fission_yeast_phenotype | 147 experimental evidence | gene_ex | 19958 in situ hybridization assay evidence | gene_ex | 14 mass spectrometry evidence | gene_ex | 13682 protein expression level evidence based on western blot used in manual assertion | gene_ex | 2 Inferred from Sequence or Structural Similarity | genome_org | 11 Inferred from Sequence or Structural Similarity | m_f_g | 41 Inferred from Direct Assay | misc | 1 Inferred from Mutant Phenotype | misc | 4 Inferred from Physical Interaction | misc | 2 Inferred from Sequence or Structural Similarity | misc | 1 Inferred by Curator | molecular_function | 146 Inferred from Biological aspect of Ancestor | molecular_function | 835 Inferred from Direct Assay | molecular_function | 2002 Inferred from Electronic Annotation | molecular_function | 1721 Inferred from Experiment | molecular_function | 691 Inferred from Genetic Interaction | molecular_function | 125 Inferred from Key Residues | molecular_function | 1 Inferred from Mutant Phenotype | molecular_function | 862 Inferred from Physical Interaction | molecular_function | 3238 Inferred from Sequence Model | molecular_function | 1174 Inferred from Sequence Orthology | molecular_function | 1333 Inferred from Sequence or Structural Similarity | molecular_function | 489 Inferred from high throughput direct assay | molecular_function | 17 Inferred from high throughput mutant phenotype | molecular_function | 1535 Non-traceable Author Statement | molecular_function | 179 Traceable Author Statement | molecular_function | 147 Inferred from Direct Assay | sequence | 2 Inferred from Experiment | sequence | 7 Inferred from Mutant Phenotype | sequence | 10 Inferred from Sequence or Structural Similarity | sequence | 354 Traceable Author Statement | sequence | 2 Inferred from Direct Assay | subunit_composition | 4 Inferred from Sequence or Structural Similarity | subunit_composition | 1 Inferred from Sequence or Structural Similarity | warning | 66 (130 rows) annotation counts by evidence code and cv type, sorted by count: ev_code | cv_name | count ----------------------------------------------------------------------------------+--------------------------+------- Inferred from Direct Assay | misc | 1 Inferred from Mutant Phenotype | PSI-MOD | 1 experimental evidence | PomGeneExProt | 1 Inferred from Sequence or Structural Similarity | subunit_composition | 1 Traceable Author Statement | PSI-MOD | 1 Inferred from Sequence or Structural Similarity | misc | 1 Inferred from Key Residues | molecular_function | 1 differential hybridization evidence | PomGeneExRNA | 1 Non-traceable Author Statement | complementation | 1 Traceable Author Statement | sequence | 2 Inferred from Direct Assay | sequence | 2 sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | PomGeneExProt | 2 protein expression level evidence based on western blot used in manual assertion | gene_ex | 2 Inferred from Sequence Model | PSI-MOD | 2 Inferred from Physical Interaction | misc | 2 quantitative PCR | PomGeneExProt | 3 Inferred from Direct Assay | subunit_composition | 4 Inferred from Mutant Phenotype | misc | 4 in situ hybridization evidence used in manual assertion | PomGeneExRNA | 5 northern assay evidence used in manual assertion | PomGeneExProt | 5 Traceable Author Statement | PomBase family or domain | 5 microscopy evidence | PomGeneExProt | 6 Inferred from Sequence or Structural Similarity | PomBase family or domain | 6 immunofluorescence evidence | PomGeneExProt | 6 Inferred from Experiment | sequence | 7 Other direct assay | fission_yeast_phenotype | 8 quantitative polymerase chain reaction evidence used in manual assertion | PomGeneExRNA | 8 Inferred from Mutant Phenotype | sequence | 10 fusion protein localization evidence | PomGeneExProt | 11 Inferred from Sequence or Structural Similarity | genome_org | 11 reporter gene assay evidence | PomGeneExRNA | 12 western blot evidence used in manual assertion | PomGeneExRNA | 13 in situ hybridization assay evidence | gene_ex | 14 transcript expression level evidence | PomGeneExRNA | 16 Inferred from high throughput direct assay | molecular_function | 17 Inferred from Expression Pattern | biological_process | 19 sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | fission_yeast_phenotype | 22 Immunolocalization experiment data | fission_yeast_phenotype | 23 Particle size and count assay | fission_yeast_phenotype | 33 Inferred from Sequence or Structural Similarity | m_f_g | 41 Inferred from Genetic Interaction | cellular_component | 46 Epitope-tagged protein immunolocalization experiment data | fission_yeast_phenotype | 55 Inferred from Mutant Phenotype | cellular_component | 57 RNA protection assay evidence | PomGeneExRNA | 58 reverse transcription polymerase chain reaction transcription evidence | PomGeneExRNA | 60 Inferred from Sequence or Structural Similarity | warning | 66 Western blot evidence | PomGeneExProt | 66 Inferred from Physical Interaction | biological_process | 68 Chromatography evidence | fission_yeast_phenotype | 69 Plasmid maintenance assay evidence | fission_yeast_phenotype | 80 Inferred from Sequence Model | cellular_component | 83 Traceable Author Statement | cellular_component | 91 Inferred from Sequence or Structural Similarity | PSI-MOD | 101 Northern assay evidence | PomGeneExRNA | 114 Non-traceable Author Statement | cellular_component | 114 Northern assay evidence | fission_yeast_phenotype | 118 quantitative PCR | PomGeneExRNA | 124 Inferred from Genetic Interaction | molecular_function | 125 reporter gene assay evidence | PomGeneExProt | 136 Traceable Author Statement | biological_process | 141 Inferred by Curator | molecular_function | 146 western blot evidence used in manual assertion | fission_yeast_phenotype | 147 Traceable Author Statement | molecular_function | 147 tryptic phosphopeptide mapping assay evidence used in automatic assertion | fission_yeast_phenotype | 149 Inferred from Sequence Model | biological_process | 159 Non-traceable Author Statement | molecular_function | 179 experimental evidence | PomGeneExRNA | 198 Electrophoretic mobility shift assay data | fission_yeast_phenotype | 203 high throughput nucleotide sequencing assay evidence | fission_yeast_phenotype | 206 Inferred from Electronic Annotation | cellular_component | 296 Inferred from Physical Interaction | cellular_component | 331 Inferred from Sequence or Structural Similarity | sequence | 354 Inferred from Sequence or Structural Similarity | cellular_component | 380 Inferred from Experiment | cellular_component | 381 Non-traceable Author Statement | biological_process | 394 Inferred from Experiment | biological_process | 418 western blot evidence used in manual assertion | PomGeneExProt | 437 Inferred from Sequence or Structural Similarity | molecular_function | 489 experimental phenotypic evidence | fission_yeast_phenotype | 493 Inferred from Sequence or Structural Similarity | biological_process | 516 Inferred by Curator | cellular_component | 536 Inferred from Genetic Interaction | biological_process | 539 Inferred from Electronic Annotation | biological_process | 549 mass spectrometry evidence | PomGeneExProt | 614 Inferred from Direct Assay | biological_process | 629 microscopy evidence used in manual assertion | fission_yeast_phenotype | 659 Inferred from Experiment | molecular_function | 691 ribosome profiling evidence | PomGeneExRD | 730 northern assay evidence used in manual assertion | PomGeneExRNA | 796 Inferred from Biological aspect of Ancestor | cellular_component | 831 Inferred from Biological aspect of Ancestor | molecular_function | 835 Inferred from Mutant Phenotype | molecular_function | 862 quantitative PCR | fission_yeast_phenotype | 934 Co-immunoprecipitation experiment | fission_yeast_phenotype | 996 Inferred by Curator | biological_process | 1037 Substance quantification evidence | fission_yeast_phenotype | 1144 Inferred from Sequence Model | molecular_function | 1174 Inferred from Biological aspect of Ancestor | biological_process | 1180 competitive growth assay evidence | fission_yeast_phenotype | 1194 differential hybridization evidence | PSI-MOD | 1287 Inferred from Sequence Orthology | molecular_function | 1333 Inferred from Sequence Orthology | cellular_component | 1475 Inferred from high throughput mutant phenotype | molecular_function | 1535 Inferred from Electronic Annotation | molecular_function | 1721 Inferred from Sequence Orthology | biological_process | 1904 Chromatin immunoprecipitation experiment | fission_yeast_phenotype | 1948 Inferred from Direct Assay | molecular_function | 2002 Other | fission_yeast_phenotype | 2063 cell viability assay evidence | fission_yeast_phenotype | 2163 Flow cytometry data | fission_yeast_phenotype | 2164 Enzyme assay data | fission_yeast_phenotype | 2198 gel electrophoresis evidence | fission_yeast_phenotype | 2485 reporter gene assay evidence | fission_yeast_phenotype | 2924 Inferred from Direct Assay | PSI-MOD | 3196 mass spectrometry evidence | PSI-MOD | 3203 Inferred from Physical Interaction | molecular_function | 3238 expression microarray evidence | PomGeneExRNA | 3519 Inferred from Mutant Phenotype | biological_process | 3654 RNA-sequencing evidence | PomGeneExRNA | 3660 transcript expression level evidence | fission_yeast_phenotype | 4134 Western blot assay | fission_yeast_phenotype | 4482 Inferred from Direct Assay | cellular_component | 5602 Inferred from high throughput direct assay | cellular_component | 6789 experimental evidence | PSI-MOD | 8141 mass spectrometry evidence | gene_ex | 13682 Microscopy | fission_yeast_phenotype | 16628 experimental evidence | gene_ex | 19958 microscopy evidence | fission_yeast_phenotype | 21227 cell growth assay evidence | fission_yeast_phenotype | 39424 tryptic phosphopeptide mapping assay evidence used in automatic assertion | PSI-MOD | 44320 (130 rows) annotation counts by evidence code and cv type, sorted by cv evidence code: ev_code | cv_name | count ----------------------------------------------------------------------------------+--------------------------+------- Chromatin immunoprecipitation experiment | fission_yeast_phenotype | 1948 Chromatography evidence | fission_yeast_phenotype | 69 Co-immunoprecipitation experiment | fission_yeast_phenotype | 996 Electrophoretic mobility shift assay data | fission_yeast_phenotype | 203 Enzyme assay data | fission_yeast_phenotype | 2198 Epitope-tagged protein immunolocalization experiment data | fission_yeast_phenotype | 55 Flow cytometry data | fission_yeast_phenotype | 2164 Immunolocalization experiment data | fission_yeast_phenotype | 23 Inferred by Curator | biological_process | 1037 Inferred by Curator | cellular_component | 536 Inferred by Curator | molecular_function | 146 Inferred from Biological aspect of Ancestor | biological_process | 1180 Inferred from Biological aspect of Ancestor | cellular_component | 831 Inferred from Biological aspect of Ancestor | molecular_function | 835 Inferred from Direct Assay | PSI-MOD | 3196 Inferred from Direct Assay | biological_process | 629 Inferred from Direct Assay | cellular_component | 5602 Inferred from Direct Assay | misc | 1 Inferred from Direct Assay | molecular_function | 2002 Inferred from Direct Assay | sequence | 2 Inferred from Direct Assay | subunit_composition | 4 Inferred from Electronic Annotation | biological_process | 549 Inferred from Electronic Annotation | cellular_component | 296 Inferred from Electronic Annotation | molecular_function | 1721 Inferred from Experiment | biological_process | 418 Inferred from Experiment | cellular_component | 381 Inferred from Experiment | molecular_function | 691 Inferred from Experiment | sequence | 7 Inferred from Expression Pattern | biological_process | 19 Inferred from Genetic Interaction | biological_process | 539 Inferred from Genetic Interaction | cellular_component | 46 Inferred from Genetic Interaction | molecular_function | 125 Inferred from Key Residues | molecular_function | 1 Inferred from Mutant Phenotype | PSI-MOD | 1 Inferred from Mutant Phenotype | biological_process | 3654 Inferred from Mutant Phenotype | cellular_component | 57 Inferred from Mutant Phenotype | misc | 4 Inferred from Mutant Phenotype | molecular_function | 862 Inferred from Mutant Phenotype | sequence | 10 Inferred from Physical Interaction | biological_process | 68 Inferred from Physical Interaction | cellular_component | 331 Inferred from Physical Interaction | misc | 2 Inferred from Physical Interaction | molecular_function | 3238 Inferred from Sequence Model | PSI-MOD | 2 Inferred from Sequence Model | biological_process | 159 Inferred from Sequence Model | cellular_component | 83 Inferred from Sequence Model | molecular_function | 1174 Inferred from Sequence Orthology | biological_process | 1904 Inferred from Sequence Orthology | cellular_component | 1475 Inferred from Sequence Orthology | molecular_function | 1333 Inferred from Sequence or Structural Similarity | PSI-MOD | 101 Inferred from Sequence or Structural Similarity | PomBase family or domain | 6 Inferred from Sequence or Structural Similarity | biological_process | 516 Inferred from Sequence or Structural Similarity | cellular_component | 380 Inferred from Sequence or Structural Similarity | genome_org | 11 Inferred from Sequence or Structural Similarity | m_f_g | 41 Inferred from Sequence or Structural Similarity | misc | 1 Inferred from Sequence or Structural Similarity | molecular_function | 489 Inferred from Sequence or Structural Similarity | sequence | 354 Inferred from Sequence or Structural Similarity | subunit_composition | 1 Inferred from Sequence or Structural Similarity | warning | 66 Inferred from high throughput direct assay | cellular_component | 6789 Inferred from high throughput direct assay | molecular_function | 17 Inferred from high throughput mutant phenotype | molecular_function | 1535 Microscopy | fission_yeast_phenotype | 16628 Non-traceable Author Statement | biological_process | 394 Non-traceable Author Statement | cellular_component | 114 Non-traceable Author Statement | complementation | 1 Non-traceable Author Statement | molecular_function | 179 Northern assay evidence | PomGeneExRNA | 114 Northern assay evidence | fission_yeast_phenotype | 118 Other | fission_yeast_phenotype | 2063 Other direct assay | fission_yeast_phenotype | 8 Particle size and count assay | fission_yeast_phenotype | 33 Plasmid maintenance assay evidence | fission_yeast_phenotype | 80 RNA protection assay evidence | PomGeneExRNA | 58 RNA-sequencing evidence | PomGeneExRNA | 3660 Substance quantification evidence | fission_yeast_phenotype | 1144 Traceable Author Statement | PSI-MOD | 1 Traceable Author Statement | PomBase family or domain | 5 Traceable Author Statement | biological_process | 141 Traceable Author Statement | cellular_component | 91 Traceable Author Statement | molecular_function | 147 Traceable Author Statement | sequence | 2 Western blot assay | fission_yeast_phenotype | 4482 Western blot evidence | PomGeneExProt | 66 cell growth assay evidence | fission_yeast_phenotype | 39424 cell viability assay evidence | fission_yeast_phenotype | 2163 competitive growth assay evidence | fission_yeast_phenotype | 1194 differential hybridization evidence | PSI-MOD | 1287 differential hybridization evidence | PomGeneExRNA | 1 experimental evidence | PSI-MOD | 8141 experimental evidence | PomGeneExProt | 1 experimental evidence | PomGeneExRNA | 198 experimental evidence | gene_ex | 19958 experimental phenotypic evidence | fission_yeast_phenotype | 493 expression microarray evidence | PomGeneExRNA | 3519 fusion protein localization evidence | PomGeneExProt | 11 gel electrophoresis evidence | fission_yeast_phenotype | 2485 high throughput nucleotide sequencing assay evidence | fission_yeast_phenotype | 206 immunofluorescence evidence | PomGeneExProt | 6 in situ hybridization assay evidence | gene_ex | 14 in situ hybridization evidence used in manual assertion | PomGeneExRNA | 5 mass spectrometry evidence | PSI-MOD | 3203 mass spectrometry evidence | PomGeneExProt | 614 mass spectrometry evidence | gene_ex | 13682 microscopy evidence | PomGeneExProt | 6 microscopy evidence | fission_yeast_phenotype | 21227 microscopy evidence used in manual assertion | fission_yeast_phenotype | 659 northern assay evidence used in manual assertion | PomGeneExProt | 5 northern assay evidence used in manual assertion | PomGeneExRNA | 796 protein expression level evidence based on western blot used in manual assertion | gene_ex | 2 quantitative PCR | PomGeneExProt | 3 quantitative PCR | PomGeneExRNA | 124 quantitative PCR | fission_yeast_phenotype | 934 quantitative polymerase chain reaction evidence used in manual assertion | PomGeneExRNA | 8 reporter gene assay evidence | PomGeneExProt | 136 reporter gene assay evidence | PomGeneExRNA | 12 reporter gene assay evidence | fission_yeast_phenotype | 2924 reverse transcription polymerase chain reaction transcription evidence | PomGeneExRNA | 60 ribosome profiling evidence | PomGeneExRD | 730 sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | PomGeneExProt | 2 sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | fission_yeast_phenotype | 22 transcript expression level evidence | PomGeneExRNA | 16 transcript expression level evidence | fission_yeast_phenotype | 4134 tryptic phosphopeptide mapping assay evidence used in automatic assertion | PSI-MOD | 44320 tryptic phosphopeptide mapping assay evidence used in automatic assertion | fission_yeast_phenotype | 149 western blot evidence used in manual assertion | PomGeneExProt | 437 western blot evidence used in manual assertion | PomGeneExRNA | 13 western blot evidence used in manual assertion | fission_yeast_phenotype | 147 (130 rows) total: count -------- 369884 (1 row) counts of annotation from Canto, by type: count | cv_name -------+------------------------------------ 7 | sequence 51 | PomGeneExProt 177 | PomGeneExRNA 2267 | PSI-MOD 4241 | biological_process 4622 | molecular_function 5316 | cellular_component 35478 | PomBase annotation extension terms 69166 | fission_yeast_phenotype (9 rows) total ------- 85847 (1 row)