counts of all annotation by type: count | cv_name --------+-------------------------------------- 6 | external_link 22 | ex_tools 27 | cat_act 27 | pathway 76 | m_f_g 163 | genome_org 191 | subunit_composition 412 | EC numbers 416 | misc 457 | complementation 730 | PomGeneExRD 882 | sequence 989 | name_description 1293 | PomGeneExProt 1696 | warning 1870 | PomBase family or domain 4086 | kegg_pombe_pathway 4552 | mondo 5143 | PomBase gene characterisation status 8603 | PomGeneExRNA 11219 | biological_process 14590 | molecular_function 17077 | cellular_component 25213 | species_dist 33656 | gene_ex 60310 | PSI-MOD 68069 | PomBase gene products 108620 | fission_yeast_phenotype (28 rows) annotation counts by evidence code and cv type, sorted by cv name: ev_code | cv_name | count ----------------------------------------------------------------------------------+--------------------------+------- Inferred from Direct Assay | PSI-MOD | 3197 Inferred from Mutant Phenotype | PSI-MOD | 1 Inferred from Sequence Model | PSI-MOD | 2 Inferred from Sequence or Structural Similarity | PSI-MOD | 101 Traceable Author Statement | PSI-MOD | 1 differential hybridization evidence | PSI-MOD | 1287 experimental evidence | PSI-MOD | 8141 mass spectrometry evidence | PSI-MOD | 3203 tryptic phosphopeptide mapping assay evidence used in automatic assertion | PSI-MOD | 44320 Inferred from Sequence or Structural Similarity | PomBase family or domain | 6 Traceable Author Statement | PomBase family or domain | 5 Western blot evidence | PomGeneExProt | 66 experimental evidence | PomGeneExProt | 1 fusion protein localization evidence | PomGeneExProt | 11 immunofluorescence evidence | PomGeneExProt | 6 mass spectrometry evidence | PomGeneExProt | 614 microscopy evidence | PomGeneExProt | 6 northern assay evidence used in manual assertion | PomGeneExProt | 5 quantitative PCR | PomGeneExProt | 3 reporter gene assay evidence | PomGeneExProt | 136 sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | PomGeneExProt | 2 western blot evidence used in manual assertion | PomGeneExProt | 437 ribosome profiling evidence | PomGeneExRD | 730 Northern assay evidence | PomGeneExRNA | 114 RNA protection assay evidence | PomGeneExRNA | 58 RNA-sequencing evidence | PomGeneExRNA | 3660 differential hybridization evidence | PomGeneExRNA | 1 experimental evidence | PomGeneExRNA | 198 expression microarray evidence | PomGeneExRNA | 3521 in situ hybridization evidence used in manual assertion | PomGeneExRNA | 5 northern assay evidence used in manual assertion | PomGeneExRNA | 796 quantitative PCR | PomGeneExRNA | 124 quantitative polymerase chain reaction evidence used in manual assertion | PomGeneExRNA | 8 reporter gene assay evidence | PomGeneExRNA | 12 reverse transcription polymerase chain reaction transcription evidence | PomGeneExRNA | 60 transcript expression level evidence | PomGeneExRNA | 16 western blot evidence used in manual assertion | PomGeneExRNA | 13 Inferred by Curator | biological_process | 1066 Inferred from Biological aspect of Ancestor | biological_process | 1190 Inferred from Direct Assay | biological_process | 631 Inferred from Electronic Annotation | biological_process | 538 Inferred from Experiment | biological_process | 425 Inferred from Expression Pattern | biological_process | 19 Inferred from Genetic Interaction | biological_process | 539 Inferred from Mutant Phenotype | biological_process | 3639 Inferred from Physical Interaction | biological_process | 68 Inferred from Sequence Model | biological_process | 157 Inferred from Sequence Orthology | biological_process | 1897 Inferred from Sequence or Structural Similarity | biological_process | 514 Non-traceable Author Statement | biological_process | 392 Traceable Author Statement | biological_process | 144 Inferred by Curator | cellular_component | 535 Inferred from Biological aspect of Ancestor | cellular_component | 841 Inferred from Direct Assay | cellular_component | 5678 Inferred from Electronic Annotation | cellular_component | 308 Inferred from Experiment | cellular_component | 388 Inferred from Genetic Interaction | cellular_component | 46 Inferred from Mutant Phenotype | cellular_component | 57 Inferred from Physical Interaction | cellular_component | 331 Inferred from Sequence Model | cellular_component | 83 Inferred from Sequence Orthology | cellular_component | 1473 Inferred from Sequence or Structural Similarity | cellular_component | 380 Inferred from high throughput direct assay | cellular_component | 6755 Non-traceable Author Statement | cellular_component | 114 Traceable Author Statement | cellular_component | 88 Non-traceable Author Statement | complementation | 1 Chromatin immunoprecipitation experiment | fission_yeast_phenotype | 1950 Chromatography evidence | fission_yeast_phenotype | 70 Co-immunoprecipitation experiment | fission_yeast_phenotype | 1006 Electrophoretic mobility shift assay data | fission_yeast_phenotype | 210 Enzyme assay data | fission_yeast_phenotype | 2312 Epitope-tagged protein immunolocalization experiment data | fission_yeast_phenotype | 55 Flow cytometry data | fission_yeast_phenotype | 2167 Immunolocalization experiment data | fission_yeast_phenotype | 23 Northern assay evidence | fission_yeast_phenotype | 118 Other | fission_yeast_phenotype | 2065 Other direct assay | fission_yeast_phenotype | 8 Particle size and count assay | fission_yeast_phenotype | 33 Plasmid maintenance assay evidence | fission_yeast_phenotype | 85 Substance quantification | fission_yeast_phenotype | 1144 Western blot assay | fission_yeast_phenotype | 4483 cell growth assay evidence | fission_yeast_phenotype | 39384 cell viability assay evidence | fission_yeast_phenotype | 2163 competitive growth assay evidence | fission_yeast_phenotype | 1194 experimental phenotypic evidence | fission_yeast_phenotype | 493 gel electrophoresis evidence | fission_yeast_phenotype | 2489 high throughput nucleotide sequencing assay evidence | fission_yeast_phenotype | 206 microscopy evidence | fission_yeast_phenotype | 37893 microscopy evidence used in manual assertion | fission_yeast_phenotype | 659 quantitative PCR | fission_yeast_phenotype | 949 reporter gene assay evidence | fission_yeast_phenotype | 2924 sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | fission_yeast_phenotype | 22 transcript expression level evidence | fission_yeast_phenotype | 4219 tryptic phosphopeptide mapping assay evidence used in automatic assertion | fission_yeast_phenotype | 149 western blot evidence used in manual assertion | fission_yeast_phenotype | 147 experimental evidence | gene_ex | 19958 in situ hybridization assay evidence | gene_ex | 14 mass spectrometry evidence | gene_ex | 13682 protein expression level evidence based on western blot used in manual assertion | gene_ex | 2 Inferred from Sequence or Structural Similarity | genome_org | 11 Inferred from Sequence or Structural Similarity | m_f_g | 41 Inferred from Direct Assay | misc | 1 Inferred from Mutant Phenotype | misc | 4 Inferred from Physical Interaction | misc | 2 Inferred from Sequence or Structural Similarity | misc | 1 Inferred by Curator | molecular_function | 228 Inferred from Biological aspect of Ancestor | molecular_function | 826 Inferred from Direct Assay | molecular_function | 2000 Inferred from Electronic Annotation | molecular_function | 1727 Inferred from Experiment | molecular_function | 716 Inferred from Genetic Interaction | molecular_function | 125 Inferred from Key Residues | molecular_function | 1 Inferred from Mutant Phenotype | molecular_function | 861 Inferred from Physical Interaction | molecular_function | 3223 Inferred from Sequence Model | molecular_function | 1173 Inferred from Sequence Orthology | molecular_function | 1337 Inferred from Sequence or Structural Similarity | molecular_function | 491 Inferred from high throughput direct assay | molecular_function | 17 Inferred from high throughput mutant phenotype | molecular_function | 1535 Non-traceable Author Statement | molecular_function | 179 Traceable Author Statement | molecular_function | 151 Inferred from Direct Assay | sequence | 2 Inferred from Experiment | sequence | 7 Inferred from Mutant Phenotype | sequence | 10 Inferred from Sequence or Structural Similarity | sequence | 354 Traceable Author Statement | sequence | 2 Inferred from Direct Assay | subunit_composition | 4 Inferred from Sequence or Structural Similarity | subunit_composition | 1 Inferred from Sequence or Structural Similarity | warning | 66 (129 rows) annotation counts by evidence code and cv type, sorted by count: ev_code | cv_name | count ----------------------------------------------------------------------------------+--------------------------+------- differential hybridization evidence | PomGeneExRNA | 1 Non-traceable Author Statement | complementation | 1 Traceable Author Statement | PSI-MOD | 1 Inferred from Key Residues | molecular_function | 1 Inferred from Sequence or Structural Similarity | subunit_composition | 1 Inferred from Direct Assay | misc | 1 Inferred from Sequence or Structural Similarity | misc | 1 Inferred from Mutant Phenotype | PSI-MOD | 1 experimental evidence | PomGeneExProt | 1 Inferred from Sequence Model | PSI-MOD | 2 Inferred from Physical Interaction | misc | 2 sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | PomGeneExProt | 2 Traceable Author Statement | sequence | 2 Inferred from Direct Assay | sequence | 2 protein expression level evidence based on western blot used in manual assertion | gene_ex | 2 quantitative PCR | PomGeneExProt | 3 Inferred from Direct Assay | subunit_composition | 4 Inferred from Mutant Phenotype | misc | 4 northern assay evidence used in manual assertion | PomGeneExProt | 5 Traceable Author Statement | PomBase family or domain | 5 in situ hybridization evidence used in manual assertion | PomGeneExRNA | 5 immunofluorescence evidence | PomGeneExProt | 6 Inferred from Sequence or Structural Similarity | PomBase family or domain | 6 microscopy evidence | PomGeneExProt | 6 Inferred from Experiment | sequence | 7 Other direct assay | fission_yeast_phenotype | 8 quantitative polymerase chain reaction evidence used in manual assertion | PomGeneExRNA | 8 Inferred from Mutant Phenotype | sequence | 10 Inferred from Sequence or Structural Similarity | genome_org | 11 fusion protein localization evidence | PomGeneExProt | 11 reporter gene assay evidence | PomGeneExRNA | 12 western blot evidence used in manual assertion | PomGeneExRNA | 13 in situ hybridization assay evidence | gene_ex | 14 transcript expression level evidence | PomGeneExRNA | 16 Inferred from high throughput direct assay | molecular_function | 17 Inferred from Expression Pattern | biological_process | 19 sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | fission_yeast_phenotype | 22 Immunolocalization experiment data | fission_yeast_phenotype | 23 Particle size and count assay | fission_yeast_phenotype | 33 Inferred from Sequence or Structural Similarity | m_f_g | 41 Inferred from Genetic Interaction | cellular_component | 46 Epitope-tagged protein immunolocalization experiment data | fission_yeast_phenotype | 55 Inferred from Mutant Phenotype | cellular_component | 57 RNA protection assay evidence | PomGeneExRNA | 58 reverse transcription polymerase chain reaction transcription evidence | PomGeneExRNA | 60 Inferred from Sequence or Structural Similarity | warning | 66 Western blot evidence | PomGeneExProt | 66 Inferred from Physical Interaction | biological_process | 68 Chromatography evidence | fission_yeast_phenotype | 70 Inferred from Sequence Model | cellular_component | 83 Plasmid maintenance assay evidence | fission_yeast_phenotype | 85 Traceable Author Statement | cellular_component | 88 Inferred from Sequence or Structural Similarity | PSI-MOD | 101 Non-traceable Author Statement | cellular_component | 114 Northern assay evidence | PomGeneExRNA | 114 Northern assay evidence | fission_yeast_phenotype | 118 quantitative PCR | PomGeneExRNA | 124 Inferred from Genetic Interaction | molecular_function | 125 reporter gene assay evidence | PomGeneExProt | 136 Traceable Author Statement | biological_process | 144 western blot evidence used in manual assertion | fission_yeast_phenotype | 147 tryptic phosphopeptide mapping assay evidence used in automatic assertion | fission_yeast_phenotype | 149 Traceable Author Statement | molecular_function | 151 Inferred from Sequence Model | biological_process | 157 Non-traceable Author Statement | molecular_function | 179 experimental evidence | PomGeneExRNA | 198 high throughput nucleotide sequencing assay evidence | fission_yeast_phenotype | 206 Electrophoretic mobility shift assay data | fission_yeast_phenotype | 210 Inferred by Curator | molecular_function | 228 Inferred from Electronic Annotation | cellular_component | 308 Inferred from Physical Interaction | cellular_component | 331 Inferred from Sequence or Structural Similarity | sequence | 354 Inferred from Sequence or Structural Similarity | cellular_component | 380 Inferred from Experiment | cellular_component | 388 Non-traceable Author Statement | biological_process | 392 Inferred from Experiment | biological_process | 425 western blot evidence used in manual assertion | PomGeneExProt | 437 Inferred from Sequence or Structural Similarity | molecular_function | 491 experimental phenotypic evidence | fission_yeast_phenotype | 493 Inferred from Sequence or Structural Similarity | biological_process | 514 Inferred by Curator | cellular_component | 535 Inferred from Electronic Annotation | biological_process | 538 Inferred from Genetic Interaction | biological_process | 539 mass spectrometry evidence | PomGeneExProt | 614 Inferred from Direct Assay | biological_process | 631 microscopy evidence used in manual assertion | fission_yeast_phenotype | 659 Inferred from Experiment | molecular_function | 716 ribosome profiling evidence | PomGeneExRD | 730 northern assay evidence used in manual assertion | PomGeneExRNA | 796 Inferred from Biological aspect of Ancestor | molecular_function | 826 Inferred from Biological aspect of Ancestor | cellular_component | 841 Inferred from Mutant Phenotype | molecular_function | 861 quantitative PCR | fission_yeast_phenotype | 949 Co-immunoprecipitation experiment | fission_yeast_phenotype | 1006 Inferred by Curator | biological_process | 1066 Substance quantification | fission_yeast_phenotype | 1144 Inferred from Sequence Model | molecular_function | 1173 Inferred from Biological aspect of Ancestor | biological_process | 1190 competitive growth assay evidence | fission_yeast_phenotype | 1194 differential hybridization evidence | PSI-MOD | 1287 Inferred from Sequence Orthology | molecular_function | 1337 Inferred from Sequence Orthology | cellular_component | 1473 Inferred from high throughput mutant phenotype | molecular_function | 1535 Inferred from Electronic Annotation | molecular_function | 1727 Inferred from Sequence Orthology | biological_process | 1897 Chromatin immunoprecipitation experiment | fission_yeast_phenotype | 1950 Inferred from Direct Assay | molecular_function | 2000 Other | fission_yeast_phenotype | 2065 cell viability assay evidence | fission_yeast_phenotype | 2163 Flow cytometry data | fission_yeast_phenotype | 2167 Enzyme assay data | fission_yeast_phenotype | 2312 gel electrophoresis evidence | fission_yeast_phenotype | 2489 reporter gene assay evidence | fission_yeast_phenotype | 2924 Inferred from Direct Assay | PSI-MOD | 3197 mass spectrometry evidence | PSI-MOD | 3203 Inferred from Physical Interaction | molecular_function | 3223 expression microarray evidence | PomGeneExRNA | 3521 Inferred from Mutant Phenotype | biological_process | 3639 RNA-sequencing evidence | PomGeneExRNA | 3660 transcript expression level evidence | fission_yeast_phenotype | 4219 Western blot assay | fission_yeast_phenotype | 4483 Inferred from Direct Assay | cellular_component | 5678 Inferred from high throughput direct assay | cellular_component | 6755 experimental evidence | PSI-MOD | 8141 mass spectrometry evidence | gene_ex | 13682 experimental evidence | gene_ex | 19958 microscopy evidence | fission_yeast_phenotype | 37893 cell growth assay evidence | fission_yeast_phenotype | 39384 tryptic phosphopeptide mapping assay evidence used in automatic assertion | PSI-MOD | 44320 (129 rows) annotation counts by evidence code and cv type, sorted by cv evidence code: ev_code | cv_name | count ----------------------------------------------------------------------------------+--------------------------+------- Chromatin immunoprecipitation experiment | fission_yeast_phenotype | 1950 Chromatography evidence | fission_yeast_phenotype | 70 Co-immunoprecipitation experiment | fission_yeast_phenotype | 1006 Electrophoretic mobility shift assay data | fission_yeast_phenotype | 210 Enzyme assay data | fission_yeast_phenotype | 2312 Epitope-tagged protein immunolocalization experiment data | fission_yeast_phenotype | 55 Flow cytometry data | fission_yeast_phenotype | 2167 Immunolocalization experiment data | fission_yeast_phenotype | 23 Inferred by Curator | biological_process | 1066 Inferred by Curator | cellular_component | 535 Inferred by Curator | molecular_function | 228 Inferred from Biological aspect of Ancestor | biological_process | 1190 Inferred from Biological aspect of Ancestor | cellular_component | 841 Inferred from Biological aspect of Ancestor | molecular_function | 826 Inferred from Direct Assay | PSI-MOD | 3197 Inferred from Direct Assay | biological_process | 631 Inferred from Direct Assay | cellular_component | 5678 Inferred from Direct Assay | misc | 1 Inferred from Direct Assay | molecular_function | 2000 Inferred from Direct Assay | sequence | 2 Inferred from Direct Assay | subunit_composition | 4 Inferred from Electronic Annotation | biological_process | 538 Inferred from Electronic Annotation | cellular_component | 308 Inferred from Electronic Annotation | molecular_function | 1727 Inferred from Experiment | biological_process | 425 Inferred from Experiment | cellular_component | 388 Inferred from Experiment | molecular_function | 716 Inferred from Experiment | sequence | 7 Inferred from Expression Pattern | biological_process | 19 Inferred from Genetic Interaction | biological_process | 539 Inferred from Genetic Interaction | cellular_component | 46 Inferred from Genetic Interaction | molecular_function | 125 Inferred from Key Residues | molecular_function | 1 Inferred from Mutant Phenotype | PSI-MOD | 1 Inferred from Mutant Phenotype | biological_process | 3639 Inferred from Mutant Phenotype | cellular_component | 57 Inferred from Mutant Phenotype | misc | 4 Inferred from Mutant Phenotype | molecular_function | 861 Inferred from Mutant Phenotype | sequence | 10 Inferred from Physical Interaction | biological_process | 68 Inferred from Physical Interaction | cellular_component | 331 Inferred from Physical Interaction | misc | 2 Inferred from Physical Interaction | molecular_function | 3223 Inferred from Sequence Model | PSI-MOD | 2 Inferred from Sequence Model | biological_process | 157 Inferred from Sequence Model | cellular_component | 83 Inferred from Sequence Model | molecular_function | 1173 Inferred from Sequence Orthology | biological_process | 1897 Inferred from Sequence Orthology | cellular_component | 1473 Inferred from Sequence Orthology | molecular_function | 1337 Inferred from Sequence or Structural Similarity | PSI-MOD | 101 Inferred from Sequence or Structural Similarity | PomBase family or domain | 6 Inferred from Sequence or Structural Similarity | biological_process | 514 Inferred from Sequence or Structural Similarity | cellular_component | 380 Inferred from Sequence or Structural Similarity | genome_org | 11 Inferred from Sequence or Structural Similarity | m_f_g | 41 Inferred from Sequence or Structural Similarity | misc | 1 Inferred from Sequence or Structural Similarity | molecular_function | 491 Inferred from Sequence or Structural Similarity | sequence | 354 Inferred from Sequence or Structural Similarity | subunit_composition | 1 Inferred from Sequence or Structural Similarity | warning | 66 Inferred from high throughput direct assay | cellular_component | 6755 Inferred from high throughput direct assay | molecular_function | 17 Inferred from high throughput mutant phenotype | molecular_function | 1535 Non-traceable Author Statement | biological_process | 392 Non-traceable Author Statement | cellular_component | 114 Non-traceable Author Statement | complementation | 1 Non-traceable Author Statement | molecular_function | 179 Northern assay evidence | PomGeneExRNA | 114 Northern assay evidence | fission_yeast_phenotype | 118 Other | fission_yeast_phenotype | 2065 Other direct assay | fission_yeast_phenotype | 8 Particle size and count assay | fission_yeast_phenotype | 33 Plasmid maintenance assay evidence | fission_yeast_phenotype | 85 RNA protection assay evidence | PomGeneExRNA | 58 RNA-sequencing evidence | PomGeneExRNA | 3660 Substance quantification | fission_yeast_phenotype | 1144 Traceable Author Statement | PSI-MOD | 1 Traceable Author Statement | PomBase family or domain | 5 Traceable Author Statement | biological_process | 144 Traceable Author Statement | cellular_component | 88 Traceable Author Statement | molecular_function | 151 Traceable Author Statement | sequence | 2 Western blot assay | fission_yeast_phenotype | 4483 Western blot evidence | PomGeneExProt | 66 cell growth assay evidence | fission_yeast_phenotype | 39384 cell viability assay evidence | fission_yeast_phenotype | 2163 competitive growth assay evidence | fission_yeast_phenotype | 1194 differential hybridization evidence | PSI-MOD | 1287 differential hybridization evidence | PomGeneExRNA | 1 experimental evidence | PSI-MOD | 8141 experimental evidence | PomGeneExProt | 1 experimental evidence | PomGeneExRNA | 198 experimental evidence | gene_ex | 19958 experimental phenotypic evidence | fission_yeast_phenotype | 493 expression microarray evidence | PomGeneExRNA | 3521 fusion protein localization evidence | PomGeneExProt | 11 gel electrophoresis evidence | fission_yeast_phenotype | 2489 high throughput nucleotide sequencing assay evidence | fission_yeast_phenotype | 206 immunofluorescence evidence | PomGeneExProt | 6 in situ hybridization assay evidence | gene_ex | 14 in situ hybridization evidence used in manual assertion | PomGeneExRNA | 5 mass spectrometry evidence | PSI-MOD | 3203 mass spectrometry evidence | PomGeneExProt | 614 mass spectrometry evidence | gene_ex | 13682 microscopy evidence | PomGeneExProt | 6 microscopy evidence | fission_yeast_phenotype | 37893 microscopy evidence used in manual assertion | fission_yeast_phenotype | 659 northern assay evidence used in manual assertion | PomGeneExProt | 5 northern assay evidence used in manual assertion | PomGeneExRNA | 796 protein expression level evidence based on western blot used in manual assertion | gene_ex | 2 quantitative PCR | PomGeneExProt | 3 quantitative PCR | PomGeneExRNA | 124 quantitative PCR | fission_yeast_phenotype | 949 quantitative polymerase chain reaction evidence used in manual assertion | PomGeneExRNA | 8 reporter gene assay evidence | PomGeneExProt | 136 reporter gene assay evidence | PomGeneExRNA | 12 reporter gene assay evidence | fission_yeast_phenotype | 2924 reverse transcription polymerase chain reaction transcription evidence | PomGeneExRNA | 60 ribosome profiling evidence | PomGeneExRD | 730 sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | PomGeneExProt | 2 sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | fission_yeast_phenotype | 22 transcript expression level evidence | PomGeneExRNA | 16 transcript expression level evidence | fission_yeast_phenotype | 4219 tryptic phosphopeptide mapping assay evidence used in automatic assertion | PSI-MOD | 44320 tryptic phosphopeptide mapping assay evidence used in automatic assertion | fission_yeast_phenotype | 149 western blot evidence used in manual assertion | PomGeneExProt | 437 western blot evidence used in manual assertion | PomGeneExRNA | 13 western blot evidence used in manual assertion | fission_yeast_phenotype | 147 (129 rows) total: count -------- 370395 (1 row) counts of annotation from Canto, by type: count | cv_name -------+------------------------------------ 7 | sequence 51 | PomGeneExProt 179 | PomGeneExRNA 2268 | PSI-MOD 4249 | biological_process 4629 | molecular_function 5420 | cellular_component 35900 | PomBase annotation extension terms 69630 | fission_yeast_phenotype (9 rows) total ------- 86433 (1 row)