counts of all annotation by type:
count | cv_name
--------+--------------------------------------
6 | external_link
22 | ex_tools
27 | cat_act
27 | pathway
76 | m_f_g
163 | genome_org
193 | subunit_composition
412 | EC numbers
423 | misc
457 | complementation
730 | PomGeneExRD
882 | sequence
994 | name_description
1293 | PomGeneExProt
1697 | warning
1870 | PomBase family or domain
4083 | kegg_pombe_pathway
4523 | mondo
5143 | PomBase gene characterisation status
8609 | PomGeneExRNA
11241 | biological_process
14630 | molecular_function
17123 | cellular_component
25229 | species_dist
33667 | gene_ex
60295 | PSI-MOD
68084 | PomBase gene products
109445 | fission_yeast_phenotype
(28 rows)
annotation counts by evidence code and cv type, sorted by cv name:
ev_code | cv_name | count
----------------------------------------------------------------------------------+--------------------------+-------
Inferred from Direct Assay | PSI-MOD | 3197
Inferred from Mutant Phenotype | PSI-MOD | 1
Inferred from Sequence Model | PSI-MOD | 2
Inferred from Sequence or Structural Similarity | PSI-MOD | 101
Traceable Author Statement | PSI-MOD | 1
differential hybridization evidence | PSI-MOD | 1287
experimental evidence | PSI-MOD | 8141
mass spectrometry evidence | PSI-MOD | 3201
tryptic phosphopeptide mapping assay evidence used in automatic assertion | PSI-MOD | 44307
Inferred from Sequence or Structural Similarity | PomBase family or domain | 6
Traceable Author Statement | PomBase family or domain | 5
Western blot evidence | PomGeneExProt | 66
experimental evidence | PomGeneExProt | 1
fusion protein localization evidence | PomGeneExProt | 11
immunofluorescence evidence | PomGeneExProt | 6
mass spectrometry evidence | PomGeneExProt | 614
microscopy evidence | PomGeneExProt | 6
northern assay evidence used in manual assertion | PomGeneExProt | 5
quantitative PCR | PomGeneExProt | 3
reporter gene assay evidence | PomGeneExProt | 136
sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | PomGeneExProt | 2
western blot evidence used in manual assertion | PomGeneExProt | 437
ribosome profiling evidence | PomGeneExRD | 730
Northern assay evidence | PomGeneExRNA | 114
RNA protection assay evidence | PomGeneExRNA | 58
RNA-sequencing evidence | PomGeneExRNA | 3660
differential hybridization evidence | PomGeneExRNA | 1
experimental evidence | PomGeneExRNA | 198
expression microarray evidence | PomGeneExRNA | 3521
in situ hybridization evidence used in manual assertion | PomGeneExRNA | 5
northern assay evidence used in manual assertion | PomGeneExRNA | 796
quantitative PCR | PomGeneExRNA | 130
quantitative polymerase chain reaction evidence used in manual assertion | PomGeneExRNA | 8
reporter gene assay evidence | PomGeneExRNA | 12
reverse transcription polymerase chain reaction transcription evidence | PomGeneExRNA | 60
transcript expression level evidence | PomGeneExRNA | 16
western blot evidence used in manual assertion | PomGeneExRNA | 13
Inferred by Curator | biological_process | 1060
Inferred from Biological aspect of Ancestor | biological_process | 1193
Inferred from Direct Assay | biological_process | 658
Inferred from Electronic Annotation | biological_process | 515
Inferred from Experiment | biological_process | 446
Inferred from Expression Pattern | biological_process | 19
Inferred from Genetic Interaction | biological_process | 540
Inferred from Mutant Phenotype | biological_process | 3642
Inferred from Physical Interaction | biological_process | 67
Inferred from Sequence Model | biological_process | 157
Inferred from Sequence Orthology | biological_process | 1899
Inferred from Sequence or Structural Similarity | biological_process | 511
Non-traceable Author Statement | biological_process | 391
Traceable Author Statement | biological_process | 143
Inferred by Curator | cellular_component | 535
Inferred from Biological aspect of Ancestor | cellular_component | 844
Inferred from Direct Assay | cellular_component | 5719
Inferred from Electronic Annotation | cellular_component | 306
Inferred from Experiment | cellular_component | 399
Inferred from Genetic Interaction | cellular_component | 45
Inferred from Mutant Phenotype | cellular_component | 57
Inferred from Physical Interaction | cellular_component | 332
Inferred from Sequence Model | cellular_component | 82
Inferred from Sequence Orthology | cellular_component | 1473
Inferred from Sequence or Structural Similarity | cellular_component | 383
Inferred from high throughput direct assay | cellular_component | 6745
Non-traceable Author Statement | cellular_component | 114
Traceable Author Statement | cellular_component | 89
Non-traceable Author Statement | complementation | 1
Chromatin immunoprecipitation experiment | fission_yeast_phenotype | 1970
Chromatography evidence | fission_yeast_phenotype | 70
Co-immunoprecipitation experiment | fission_yeast_phenotype | 1006
Electrophoretic mobility shift assay data | fission_yeast_phenotype | 217
Enzyme assay data | fission_yeast_phenotype | 2306
Epitope-tagged protein immunolocalization experiment data | fission_yeast_phenotype | 55
Flow cytometry data | fission_yeast_phenotype | 2171
Immunolocalization experiment data | fission_yeast_phenotype | 23
Northern assay evidence | fission_yeast_phenotype | 118
Other | fission_yeast_phenotype | 2141
Other direct assay | fission_yeast_phenotype | 8
Particle size and count assay | fission_yeast_phenotype | 33
Plasmid maintenance assay evidence | fission_yeast_phenotype | 85
Substance quantification | fission_yeast_phenotype | 1159
Western blot assay | fission_yeast_phenotype | 4528
cell growth assay evidence | fission_yeast_phenotype | 39712
cell viability assay evidence | fission_yeast_phenotype | 2163
competitive growth assay evidence | fission_yeast_phenotype | 1194
experimental phenotypic evidence | fission_yeast_phenotype | 493
gel electrophoresis evidence | fission_yeast_phenotype | 2505
high throughput nucleotide sequencing assay evidence | fission_yeast_phenotype | 206
microscopy evidence | fission_yeast_phenotype | 38128
microscopy evidence used in manual assertion | fission_yeast_phenotype | 659
quantitative PCR | fission_yeast_phenotype | 976
reporter gene assay evidence | fission_yeast_phenotype | 2984
sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | fission_yeast_phenotype | 22
transcript expression level evidence | fission_yeast_phenotype | 4217
tryptic phosphopeptide mapping assay evidence used in automatic assertion | fission_yeast_phenotype | 149
western blot evidence used in manual assertion | fission_yeast_phenotype | 147
RNA detection assay evidence | gene_ex | 2
experimental evidence | gene_ex | 19958
in situ hybridization assay evidence | gene_ex | 14
mass spectrometry evidence | gene_ex | 13682
microscopy evidence | gene_ex | 9
protein expression level evidence based on western blot used in manual assertion | gene_ex | 2
Inferred from Sequence or Structural Similarity | genome_org | 11
Inferred from Sequence or Structural Similarity | m_f_g | 41
Inferred from Direct Assay | misc | 1
Inferred from Mutant Phenotype | misc | 4
Inferred from Physical Interaction | misc | 2
Inferred from Sequence or Structural Similarity | misc | 1
Inferred by Curator | molecular_function | 220
Inferred from Biological aspect of Ancestor | molecular_function | 828
Inferred from Direct Assay | molecular_function | 2017
Inferred from Electronic Annotation | molecular_function | 1743
Inferred from Experiment | molecular_function | 732
Inferred from Genetic Interaction | molecular_function | 125
Inferred from Key Residues | molecular_function | 1
Inferred from Mutant Phenotype | molecular_function | 863
Inferred from Physical Interaction | molecular_function | 3230
Inferred from Sequence Model | molecular_function | 1165
Inferred from Sequence Orthology | molecular_function | 1332
Inferred from Sequence or Structural Similarity | molecular_function | 492
Inferred from high throughput direct assay | molecular_function | 17
Inferred from high throughput mutant phenotype | molecular_function | 1535
Non-traceable Author Statement | molecular_function | 180
Traceable Author Statement | molecular_function | 150
Inferred from Direct Assay | sequence | 2
Inferred from Experiment | sequence | 7
Inferred from Mutant Phenotype | sequence | 10
Inferred from Sequence or Structural Similarity | sequence | 354
Traceable Author Statement | sequence | 2
Inferred from Direct Assay | subunit_composition | 4
Inferred from Sequence or Structural Similarity | subunit_composition | 1
Inferred from Sequence or Structural Similarity | warning | 66
(131 rows)
annotation counts by evidence code and cv type, sorted by count:
ev_code | cv_name | count
----------------------------------------------------------------------------------+--------------------------+-------
differential hybridization evidence | PomGeneExRNA | 1
experimental evidence | PomGeneExProt | 1
Inferred from Key Residues | molecular_function | 1
Inferred from Direct Assay | misc | 1
Traceable Author Statement | PSI-MOD | 1
Inferred from Sequence or Structural Similarity | misc | 1
Inferred from Sequence or Structural Similarity | subunit_composition | 1
Inferred from Mutant Phenotype | PSI-MOD | 1
Non-traceable Author Statement | complementation | 1
Inferred from Sequence Model | PSI-MOD | 2
Inferred from Physical Interaction | misc | 2
sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | PomGeneExProt | 2
RNA detection assay evidence | gene_ex | 2
protein expression level evidence based on western blot used in manual assertion | gene_ex | 2
Traceable Author Statement | sequence | 2
Inferred from Direct Assay | sequence | 2
quantitative PCR | PomGeneExProt | 3
Inferred from Mutant Phenotype | misc | 4
Inferred from Direct Assay | subunit_composition | 4
northern assay evidence used in manual assertion | PomGeneExProt | 5
Traceable Author Statement | PomBase family or domain | 5
in situ hybridization evidence used in manual assertion | PomGeneExRNA | 5
microscopy evidence | PomGeneExProt | 6
immunofluorescence evidence | PomGeneExProt | 6
Inferred from Sequence or Structural Similarity | PomBase family or domain | 6
Inferred from Experiment | sequence | 7
quantitative polymerase chain reaction evidence used in manual assertion | PomGeneExRNA | 8
Other direct assay | fission_yeast_phenotype | 8
microscopy evidence | gene_ex | 9
Inferred from Mutant Phenotype | sequence | 10
fusion protein localization evidence | PomGeneExProt | 11
Inferred from Sequence or Structural Similarity | genome_org | 11
reporter gene assay evidence | PomGeneExRNA | 12
western blot evidence used in manual assertion | PomGeneExRNA | 13
in situ hybridization assay evidence | gene_ex | 14
transcript expression level evidence | PomGeneExRNA | 16
Inferred from high throughput direct assay | molecular_function | 17
Inferred from Expression Pattern | biological_process | 19
sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | fission_yeast_phenotype | 22
Immunolocalization experiment data | fission_yeast_phenotype | 23
Particle size and count assay | fission_yeast_phenotype | 33
Inferred from Sequence or Structural Similarity | m_f_g | 41
Inferred from Genetic Interaction | cellular_component | 45
Epitope-tagged protein immunolocalization experiment data | fission_yeast_phenotype | 55
Inferred from Mutant Phenotype | cellular_component | 57
RNA protection assay evidence | PomGeneExRNA | 58
reverse transcription polymerase chain reaction transcription evidence | PomGeneExRNA | 60
Western blot evidence | PomGeneExProt | 66
Inferred from Sequence or Structural Similarity | warning | 66
Inferred from Physical Interaction | biological_process | 67
Chromatography evidence | fission_yeast_phenotype | 70
Inferred from Sequence Model | cellular_component | 82
Plasmid maintenance assay evidence | fission_yeast_phenotype | 85
Traceable Author Statement | cellular_component | 89
Inferred from Sequence or Structural Similarity | PSI-MOD | 101
Northern assay evidence | PomGeneExRNA | 114
Non-traceable Author Statement | cellular_component | 114
Northern assay evidence | fission_yeast_phenotype | 118
Inferred from Genetic Interaction | molecular_function | 125
quantitative PCR | PomGeneExRNA | 130
reporter gene assay evidence | PomGeneExProt | 136
Traceable Author Statement | biological_process | 143
western blot evidence used in manual assertion | fission_yeast_phenotype | 147
tryptic phosphopeptide mapping assay evidence used in automatic assertion | fission_yeast_phenotype | 149
Traceable Author Statement | molecular_function | 150
Inferred from Sequence Model | biological_process | 157
Non-traceable Author Statement | molecular_function | 180
experimental evidence | PomGeneExRNA | 198
high throughput nucleotide sequencing assay evidence | fission_yeast_phenotype | 206
Electrophoretic mobility shift assay data | fission_yeast_phenotype | 217
Inferred by Curator | molecular_function | 220
Inferred from Electronic Annotation | cellular_component | 306
Inferred from Physical Interaction | cellular_component | 332
Inferred from Sequence or Structural Similarity | sequence | 354
Inferred from Sequence or Structural Similarity | cellular_component | 383
Non-traceable Author Statement | biological_process | 391
Inferred from Experiment | cellular_component | 399
western blot evidence used in manual assertion | PomGeneExProt | 437
Inferred from Experiment | biological_process | 446
Inferred from Sequence or Structural Similarity | molecular_function | 492
experimental phenotypic evidence | fission_yeast_phenotype | 493
Inferred from Sequence or Structural Similarity | biological_process | 511
Inferred from Electronic Annotation | biological_process | 515
Inferred by Curator | cellular_component | 535
Inferred from Genetic Interaction | biological_process | 540
mass spectrometry evidence | PomGeneExProt | 614
Inferred from Direct Assay | biological_process | 658
microscopy evidence used in manual assertion | fission_yeast_phenotype | 659
ribosome profiling evidence | PomGeneExRD | 730
Inferred from Experiment | molecular_function | 732
northern assay evidence used in manual assertion | PomGeneExRNA | 796
Inferred from Biological aspect of Ancestor | molecular_function | 828
Inferred from Biological aspect of Ancestor | cellular_component | 844
Inferred from Mutant Phenotype | molecular_function | 863
quantitative PCR | fission_yeast_phenotype | 976
Co-immunoprecipitation experiment | fission_yeast_phenotype | 1006
Inferred by Curator | biological_process | 1060
Substance quantification | fission_yeast_phenotype | 1159
Inferred from Sequence Model | molecular_function | 1165
Inferred from Biological aspect of Ancestor | biological_process | 1193
competitive growth assay evidence | fission_yeast_phenotype | 1194
differential hybridization evidence | PSI-MOD | 1287
Inferred from Sequence Orthology | molecular_function | 1332
Inferred from Sequence Orthology | cellular_component | 1473
Inferred from high throughput mutant phenotype | molecular_function | 1535
Inferred from Electronic Annotation | molecular_function | 1743
Inferred from Sequence Orthology | biological_process | 1899
Chromatin immunoprecipitation experiment | fission_yeast_phenotype | 1970
Inferred from Direct Assay | molecular_function | 2017
Other | fission_yeast_phenotype | 2141
cell viability assay evidence | fission_yeast_phenotype | 2163
Flow cytometry data | fission_yeast_phenotype | 2171
Enzyme assay data | fission_yeast_phenotype | 2306
gel electrophoresis evidence | fission_yeast_phenotype | 2505
reporter gene assay evidence | fission_yeast_phenotype | 2984
Inferred from Direct Assay | PSI-MOD | 3197
mass spectrometry evidence | PSI-MOD | 3201
Inferred from Physical Interaction | molecular_function | 3230
expression microarray evidence | PomGeneExRNA | 3521
Inferred from Mutant Phenotype | biological_process | 3642
RNA-sequencing evidence | PomGeneExRNA | 3660
transcript expression level evidence | fission_yeast_phenotype | 4217
Western blot assay | fission_yeast_phenotype | 4528
Inferred from Direct Assay | cellular_component | 5719
Inferred from high throughput direct assay | cellular_component | 6745
experimental evidence | PSI-MOD | 8141
mass spectrometry evidence | gene_ex | 13682
experimental evidence | gene_ex | 19958
microscopy evidence | fission_yeast_phenotype | 38128
cell growth assay evidence | fission_yeast_phenotype | 39712
tryptic phosphopeptide mapping assay evidence used in automatic assertion | PSI-MOD | 44307
(131 rows)
annotation counts by evidence code and cv type, sorted by cv evidence code:
ev_code | cv_name | count
----------------------------------------------------------------------------------+--------------------------+-------
Chromatin immunoprecipitation experiment | fission_yeast_phenotype | 1970
Chromatography evidence | fission_yeast_phenotype | 70
Co-immunoprecipitation experiment | fission_yeast_phenotype | 1006
Electrophoretic mobility shift assay data | fission_yeast_phenotype | 217
Enzyme assay data | fission_yeast_phenotype | 2306
Epitope-tagged protein immunolocalization experiment data | fission_yeast_phenotype | 55
Flow cytometry data | fission_yeast_phenotype | 2171
Immunolocalization experiment data | fission_yeast_phenotype | 23
Inferred by Curator | biological_process | 1060
Inferred by Curator | cellular_component | 535
Inferred by Curator | molecular_function | 220
Inferred from Biological aspect of Ancestor | biological_process | 1193
Inferred from Biological aspect of Ancestor | cellular_component | 844
Inferred from Biological aspect of Ancestor | molecular_function | 828
Inferred from Direct Assay | PSI-MOD | 3197
Inferred from Direct Assay | biological_process | 658
Inferred from Direct Assay | cellular_component | 5719
Inferred from Direct Assay | misc | 1
Inferred from Direct Assay | molecular_function | 2017
Inferred from Direct Assay | sequence | 2
Inferred from Direct Assay | subunit_composition | 4
Inferred from Electronic Annotation | biological_process | 515
Inferred from Electronic Annotation | cellular_component | 306
Inferred from Electronic Annotation | molecular_function | 1743
Inferred from Experiment | biological_process | 446
Inferred from Experiment | cellular_component | 399
Inferred from Experiment | molecular_function | 732
Inferred from Experiment | sequence | 7
Inferred from Expression Pattern | biological_process | 19
Inferred from Genetic Interaction | biological_process | 540
Inferred from Genetic Interaction | cellular_component | 45
Inferred from Genetic Interaction | molecular_function | 125
Inferred from Key Residues | molecular_function | 1
Inferred from Mutant Phenotype | PSI-MOD | 1
Inferred from Mutant Phenotype | biological_process | 3642
Inferred from Mutant Phenotype | cellular_component | 57
Inferred from Mutant Phenotype | misc | 4
Inferred from Mutant Phenotype | molecular_function | 863
Inferred from Mutant Phenotype | sequence | 10
Inferred from Physical Interaction | biological_process | 67
Inferred from Physical Interaction | cellular_component | 332
Inferred from Physical Interaction | misc | 2
Inferred from Physical Interaction | molecular_function | 3230
Inferred from Sequence Model | PSI-MOD | 2
Inferred from Sequence Model | biological_process | 157
Inferred from Sequence Model | cellular_component | 82
Inferred from Sequence Model | molecular_function | 1165
Inferred from Sequence Orthology | biological_process | 1899
Inferred from Sequence Orthology | cellular_component | 1473
Inferred from Sequence Orthology | molecular_function | 1332
Inferred from Sequence or Structural Similarity | PSI-MOD | 101
Inferred from Sequence or Structural Similarity | PomBase family or domain | 6
Inferred from Sequence or Structural Similarity | biological_process | 511
Inferred from Sequence or Structural Similarity | cellular_component | 383
Inferred from Sequence or Structural Similarity | genome_org | 11
Inferred from Sequence or Structural Similarity | m_f_g | 41
Inferred from Sequence or Structural Similarity | misc | 1
Inferred from Sequence or Structural Similarity | molecular_function | 492
Inferred from Sequence or Structural Similarity | sequence | 354
Inferred from Sequence or Structural Similarity | subunit_composition | 1
Inferred from Sequence or Structural Similarity | warning | 66
Inferred from high throughput direct assay | cellular_component | 6745
Inferred from high throughput direct assay | molecular_function | 17
Inferred from high throughput mutant phenotype | molecular_function | 1535
Non-traceable Author Statement | biological_process | 391
Non-traceable Author Statement | cellular_component | 114
Non-traceable Author Statement | complementation | 1
Non-traceable Author Statement | molecular_function | 180
Northern assay evidence | PomGeneExRNA | 114
Northern assay evidence | fission_yeast_phenotype | 118
Other | fission_yeast_phenotype | 2141
Other direct assay | fission_yeast_phenotype | 8
Particle size and count assay | fission_yeast_phenotype | 33
Plasmid maintenance assay evidence | fission_yeast_phenotype | 85
RNA detection assay evidence | gene_ex | 2
RNA protection assay evidence | PomGeneExRNA | 58
RNA-sequencing evidence | PomGeneExRNA | 3660
Substance quantification | fission_yeast_phenotype | 1159
Traceable Author Statement | PSI-MOD | 1
Traceable Author Statement | PomBase family or domain | 5
Traceable Author Statement | biological_process | 143
Traceable Author Statement | cellular_component | 89
Traceable Author Statement | molecular_function | 150
Traceable Author Statement | sequence | 2
Western blot assay | fission_yeast_phenotype | 4528
Western blot evidence | PomGeneExProt | 66
cell growth assay evidence | fission_yeast_phenotype | 39712
cell viability assay evidence | fission_yeast_phenotype | 2163
competitive growth assay evidence | fission_yeast_phenotype | 1194
differential hybridization evidence | PSI-MOD | 1287
differential hybridization evidence | PomGeneExRNA | 1
experimental evidence | PSI-MOD | 8141
experimental evidence | PomGeneExProt | 1
experimental evidence | PomGeneExRNA | 198
experimental evidence | gene_ex | 19958
experimental phenotypic evidence | fission_yeast_phenotype | 493
expression microarray evidence | PomGeneExRNA | 3521
fusion protein localization evidence | PomGeneExProt | 11
gel electrophoresis evidence | fission_yeast_phenotype | 2505
high throughput nucleotide sequencing assay evidence | fission_yeast_phenotype | 206
immunofluorescence evidence | PomGeneExProt | 6
in situ hybridization assay evidence | gene_ex | 14
in situ hybridization evidence used in manual assertion | PomGeneExRNA | 5
mass spectrometry evidence | PSI-MOD | 3201
mass spectrometry evidence | PomGeneExProt | 614
mass spectrometry evidence | gene_ex | 13682
microscopy evidence | PomGeneExProt | 6
microscopy evidence | fission_yeast_phenotype | 38128
microscopy evidence | gene_ex | 9
microscopy evidence used in manual assertion | fission_yeast_phenotype | 659
northern assay evidence used in manual assertion | PomGeneExProt | 5
northern assay evidence used in manual assertion | PomGeneExRNA | 796
protein expression level evidence based on western blot used in manual assertion | gene_ex | 2
quantitative PCR | PomGeneExProt | 3
quantitative PCR | PomGeneExRNA | 130
quantitative PCR | fission_yeast_phenotype | 976
quantitative polymerase chain reaction evidence used in manual assertion | PomGeneExRNA | 8
reporter gene assay evidence | PomGeneExProt | 136
reporter gene assay evidence | PomGeneExRNA | 12
reporter gene assay evidence | fission_yeast_phenotype | 2984
reverse transcription polymerase chain reaction transcription evidence | PomGeneExRNA | 60
ribosome profiling evidence | PomGeneExRD | 730
sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | PomGeneExProt | 2
sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | fission_yeast_phenotype | 22
transcript expression level evidence | PomGeneExRNA | 16
transcript expression level evidence | fission_yeast_phenotype | 4217
tryptic phosphopeptide mapping assay evidence used in automatic assertion | PSI-MOD | 44307
tryptic phosphopeptide mapping assay evidence used in automatic assertion | fission_yeast_phenotype | 149
western blot evidence used in manual assertion | PomGeneExProt | 437
western blot evidence used in manual assertion | PomGeneExRNA | 13
western blot evidence used in manual assertion | fission_yeast_phenotype | 147
(131 rows)
total:
count
--------
371344
(1 row)
counts of annotation from Canto, by type:
count | cv_name
-------+------------------------------------
7 | sequence
51 | PomGeneExProt
185 | PomGeneExRNA
2268 | PSI-MOD
4307 | biological_process
4669 | molecular_function
5477 | cellular_component
36316 | PomBase annotation extension terms
70455 | fission_yeast_phenotype
(9 rows)
total
-------
87419
(1 row)