counts of all annotation by type:
count | cv_name
--------+--------------------------------------
6 | external_link
22 | ex_tools
27 | cat_act
27 | pathway
76 | m_f_g
163 | genome_org
193 | subunit_composition
412 | EC numbers
423 | misc
458 | complementation
730 | PomGeneExRD
882 | sequence
994 | name_description
1294 | PomGeneExProt
1697 | warning
1869 | PomBase family or domain
4089 | kegg_pombe_pathway
4550 | mondo
5143 | PomBase gene characterisation status
8683 | PomGeneExRNA
11206 | biological_process
14623 | molecular_function
17020 | cellular_component
25229 | species_dist
33667 | gene_ex
60295 | PSI-MOD
68100 | PomBase gene products
109813 | fission_yeast_phenotype
(28 rows)
annotation counts by evidence code and cv type, sorted by cv name:
ev_code | cv_name | count
----------------------------------------------------------------------------------+--------------------------+-------
Inferred from Direct Assay | PSI-MOD | 3197
Inferred from Mutant Phenotype | PSI-MOD | 1
Inferred from Sequence Model | PSI-MOD | 2
Inferred from Sequence or Structural Similarity | PSI-MOD | 101
Traceable Author Statement | PSI-MOD | 1
differential hybridization evidence | PSI-MOD | 1287
experimental evidence | PSI-MOD | 8141
mass spectrometry evidence | PSI-MOD | 3201
tryptic phosphopeptide mapping assay evidence used in automatic assertion | PSI-MOD | 44307
Inferred from Sequence or Structural Similarity | PomBase family or domain | 6
Traceable Author Statement | PomBase family or domain | 5
Western blot evidence | PomGeneExProt | 67
experimental evidence | PomGeneExProt | 1
fusion protein localization evidence | PomGeneExProt | 11
immunofluorescence evidence | PomGeneExProt | 6
mass spectrometry evidence | PomGeneExProt | 614
microscopy evidence | PomGeneExProt | 6
northern assay evidence used in manual assertion | PomGeneExProt | 5
quantitative PCR | PomGeneExProt | 3
reporter gene assay evidence | PomGeneExProt | 136
sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | PomGeneExProt | 2
western blot evidence used in manual assertion | PomGeneExProt | 437
ribosome profiling evidence | PomGeneExRD | 730
Northern assay evidence | PomGeneExRNA | 114
RNA protection assay evidence | PomGeneExRNA | 58
RNA-sequencing evidence | PomGeneExRNA | 3734
differential hybridization evidence | PomGeneExRNA | 1
experimental evidence | PomGeneExRNA | 198
expression microarray evidence | PomGeneExRNA | 3521
in situ hybridization evidence used in manual assertion | PomGeneExRNA | 5
northern assay evidence used in manual assertion | PomGeneExRNA | 796
quantitative PCR | PomGeneExRNA | 130
quantitative polymerase chain reaction evidence used in manual assertion | PomGeneExRNA | 8
reporter gene assay evidence | PomGeneExRNA | 12
reverse transcription polymerase chain reaction transcription evidence | PomGeneExRNA | 60
transcript expression level evidence | PomGeneExRNA | 16
western blot evidence used in manual assertion | PomGeneExRNA | 13
Inferred by Curator | biological_process | 953
Inferred from Biological aspect of Ancestor | biological_process | 2004
Inferred from Direct Assay | biological_process | 657
Inferred from Electronic Annotation | biological_process | 398
Inferred from Experiment | biological_process | 463
Inferred from Expression Pattern | biological_process | 19
Inferred from Genetic Interaction | biological_process | 536
Inferred from Mutant Phenotype | biological_process | 3652
Inferred from Physical Interaction | biological_process | 66
Inferred from Sequence Model | biological_process | 133
Inferred from Sequence Orthology | biological_process | 1403
Inferred from Sequence or Structural Similarity | biological_process | 416
Non-traceable Author Statement | biological_process | 382
Traceable Author Statement | biological_process | 124
Inferred by Curator | cellular_component | 521
Inferred from Biological aspect of Ancestor | cellular_component | 1526
Inferred from Direct Assay | cellular_component | 5706
Inferred from Electronic Annotation | cellular_component | 277
Inferred from Experiment | cellular_component | 410
Inferred from Genetic Interaction | cellular_component | 45
Inferred from Mutant Phenotype | cellular_component | 58
Inferred from Physical Interaction | cellular_component | 291
Inferred from Sequence Model | cellular_component | 77
Inferred from Sequence Orthology | cellular_component | 943
Inferred from Sequence or Structural Similarity | cellular_component | 253
Inferred from high throughput direct assay | cellular_component | 6739
Non-traceable Author Statement | cellular_component | 99
Traceable Author Statement | cellular_component | 75
Non-traceable Author Statement | complementation | 1
Chromatin immunoprecipitation experiment | fission_yeast_phenotype | 1977
Chromatography evidence | fission_yeast_phenotype | 70
Co-immunoprecipitation experiment | fission_yeast_phenotype | 1081
Electrophoretic mobility shift assay data | fission_yeast_phenotype | 230
Enzyme assay data | fission_yeast_phenotype | 2308
Epitope-tagged protein immunolocalization experiment data | fission_yeast_phenotype | 55
Flow cytometry data | fission_yeast_phenotype | 2171
Immunolocalization experiment data | fission_yeast_phenotype | 23
Northern assay evidence | fission_yeast_phenotype | 117
Other | fission_yeast_phenotype | 2146
Other direct assay | fission_yeast_phenotype | 8
Particle size and count assay | fission_yeast_phenotype | 34
Plasmid maintenance assay evidence | fission_yeast_phenotype | 85
Substance quantification evidence | fission_yeast_phenotype | 1159
Western blot assay | fission_yeast_phenotype | 4577
cell growth assay evidence | fission_yeast_phenotype | 39753
cell viability assay evidence | fission_yeast_phenotype | 2163
competitive growth assay evidence | fission_yeast_phenotype | 1194
experimental phenotypic evidence | fission_yeast_phenotype | 493
gel electrophoresis evidence | fission_yeast_phenotype | 2516
high throughput nucleotide sequencing assay evidence | fission_yeast_phenotype | 206
microscopy evidence | fission_yeast_phenotype | 38218
microscopy evidence used in manual assertion | fission_yeast_phenotype | 659
quantitative PCR | fission_yeast_phenotype | 976
reporter gene assay evidence | fission_yeast_phenotype | 2999
sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | fission_yeast_phenotype | 22
transcript expression level evidence | fission_yeast_phenotype | 4277
tryptic phosphopeptide mapping assay evidence used in automatic assertion | fission_yeast_phenotype | 149
western blot evidence used in manual assertion | fission_yeast_phenotype | 147
RNA detection assay evidence | gene_ex | 2
experimental evidence | gene_ex | 19958
in situ hybridization assay evidence | gene_ex | 14
mass spectrometry evidence | gene_ex | 13682
microscopy evidence | gene_ex | 9
protein expression level evidence based on western blot used in manual assertion | gene_ex | 2
Inferred from Sequence or Structural Similarity | genome_org | 11
Inferred from Sequence or Structural Similarity | m_f_g | 41
Inferred from Direct Assay | misc | 1
Inferred from Mutant Phenotype | misc | 4
Inferred from Physical Interaction | misc | 2
Inferred from Sequence or Structural Similarity | misc | 1
Inferred by Curator | molecular_function | 198
Inferred from Biological aspect of Ancestor | molecular_function | 1843
Inferred from Direct Assay | molecular_function | 2021
Inferred from Electronic Annotation | molecular_function | 1498
Inferred from Experiment | molecular_function | 748
Inferred from Genetic Interaction | molecular_function | 125
Inferred from Key Residues | molecular_function | 1
Inferred from Mutant Phenotype | molecular_function | 862
Inferred from Physical Interaction | molecular_function | 3229
Inferred from Sequence Model | molecular_function | 1072
Inferred from Sequence Orthology | molecular_function | 833
Inferred from Sequence or Structural Similarity | molecular_function | 332
Inferred from high throughput direct assay | molecular_function | 17
Inferred from high throughput mutant phenotype | molecular_function | 1535
Non-traceable Author Statement | molecular_function | 176
Traceable Author Statement | molecular_function | 133
Inferred from Direct Assay | sequence | 2
Inferred from Experiment | sequence | 7
Inferred from Mutant Phenotype | sequence | 10
Inferred from Sequence or Structural Similarity | sequence | 354
Traceable Author Statement | sequence | 2
Inferred from Direct Assay | subunit_composition | 4
Inferred from Sequence or Structural Similarity | subunit_composition | 1
Inferred from Sequence or Structural Similarity | warning | 66
(131 rows)
annotation counts by evidence code and cv type, sorted by count:
ev_code | cv_name | count
----------------------------------------------------------------------------------+--------------------------+-------
Non-traceable Author Statement | complementation | 1
differential hybridization evidence | PomGeneExRNA | 1
Inferred from Key Residues | molecular_function | 1
Inferred from Sequence or Structural Similarity | misc | 1
Inferred from Mutant Phenotype | PSI-MOD | 1
Traceable Author Statement | PSI-MOD | 1
Inferred from Direct Assay | misc | 1
Inferred from Sequence or Structural Similarity | subunit_composition | 1
experimental evidence | PomGeneExProt | 1
Inferred from Sequence Model | PSI-MOD | 2
RNA detection assay evidence | gene_ex | 2
protein expression level evidence based on western blot used in manual assertion | gene_ex | 2
Inferred from Physical Interaction | misc | 2
Traceable Author Statement | sequence | 2
Inferred from Direct Assay | sequence | 2
sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | PomGeneExProt | 2
quantitative PCR | PomGeneExProt | 3
Inferred from Direct Assay | subunit_composition | 4
Inferred from Mutant Phenotype | misc | 4
in situ hybridization evidence used in manual assertion | PomGeneExRNA | 5
Traceable Author Statement | PomBase family or domain | 5
northern assay evidence used in manual assertion | PomGeneExProt | 5
microscopy evidence | PomGeneExProt | 6
immunofluorescence evidence | PomGeneExProt | 6
Inferred from Sequence or Structural Similarity | PomBase family or domain | 6
Inferred from Experiment | sequence | 7
quantitative polymerase chain reaction evidence used in manual assertion | PomGeneExRNA | 8
Other direct assay | fission_yeast_phenotype | 8
microscopy evidence | gene_ex | 9
Inferred from Mutant Phenotype | sequence | 10
Inferred from Sequence or Structural Similarity | genome_org | 11
fusion protein localization evidence | PomGeneExProt | 11
reporter gene assay evidence | PomGeneExRNA | 12
western blot evidence used in manual assertion | PomGeneExRNA | 13
in situ hybridization assay evidence | gene_ex | 14
transcript expression level evidence | PomGeneExRNA | 16
Inferred from high throughput direct assay | molecular_function | 17
Inferred from Expression Pattern | biological_process | 19
sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | fission_yeast_phenotype | 22
Immunolocalization experiment data | fission_yeast_phenotype | 23
Particle size and count assay | fission_yeast_phenotype | 34
Inferred from Sequence or Structural Similarity | m_f_g | 41
Inferred from Genetic Interaction | cellular_component | 45
Epitope-tagged protein immunolocalization experiment data | fission_yeast_phenotype | 55
RNA protection assay evidence | PomGeneExRNA | 58
Inferred from Mutant Phenotype | cellular_component | 58
reverse transcription polymerase chain reaction transcription evidence | PomGeneExRNA | 60
Inferred from Sequence or Structural Similarity | warning | 66
Inferred from Physical Interaction | biological_process | 66
Western blot evidence | PomGeneExProt | 67
Chromatography evidence | fission_yeast_phenotype | 70
Traceable Author Statement | cellular_component | 75
Inferred from Sequence Model | cellular_component | 77
Plasmid maintenance assay evidence | fission_yeast_phenotype | 85
Non-traceable Author Statement | cellular_component | 99
Inferred from Sequence or Structural Similarity | PSI-MOD | 101
Northern assay evidence | PomGeneExRNA | 114
Northern assay evidence | fission_yeast_phenotype | 117
Traceable Author Statement | biological_process | 124
Inferred from Genetic Interaction | molecular_function | 125
quantitative PCR | PomGeneExRNA | 130
Traceable Author Statement | molecular_function | 133
Inferred from Sequence Model | biological_process | 133
reporter gene assay evidence | PomGeneExProt | 136
western blot evidence used in manual assertion | fission_yeast_phenotype | 147
tryptic phosphopeptide mapping assay evidence used in automatic assertion | fission_yeast_phenotype | 149
Non-traceable Author Statement | molecular_function | 176
experimental evidence | PomGeneExRNA | 198
Inferred by Curator | molecular_function | 198
high throughput nucleotide sequencing assay evidence | fission_yeast_phenotype | 206
Electrophoretic mobility shift assay data | fission_yeast_phenotype | 230
Inferred from Sequence or Structural Similarity | cellular_component | 253
Inferred from Electronic Annotation | cellular_component | 277
Inferred from Physical Interaction | cellular_component | 291
Inferred from Sequence or Structural Similarity | molecular_function | 332
Inferred from Sequence or Structural Similarity | sequence | 354
Non-traceable Author Statement | biological_process | 382
Inferred from Electronic Annotation | biological_process | 398
Inferred from Experiment | cellular_component | 410
Inferred from Sequence or Structural Similarity | biological_process | 416
western blot evidence used in manual assertion | PomGeneExProt | 437
Inferred from Experiment | biological_process | 463
experimental phenotypic evidence | fission_yeast_phenotype | 493
Inferred by Curator | cellular_component | 521
Inferred from Genetic Interaction | biological_process | 536
mass spectrometry evidence | PomGeneExProt | 614
Inferred from Direct Assay | biological_process | 657
microscopy evidence used in manual assertion | fission_yeast_phenotype | 659
ribosome profiling evidence | PomGeneExRD | 730
Inferred from Experiment | molecular_function | 748
northern assay evidence used in manual assertion | PomGeneExRNA | 796
Inferred from Sequence Orthology | molecular_function | 833
Inferred from Mutant Phenotype | molecular_function | 862
Inferred from Sequence Orthology | cellular_component | 943
Inferred by Curator | biological_process | 953
quantitative PCR | fission_yeast_phenotype | 976
Inferred from Sequence Model | molecular_function | 1072
Co-immunoprecipitation experiment | fission_yeast_phenotype | 1081
Substance quantification evidence | fission_yeast_phenotype | 1159
competitive growth assay evidence | fission_yeast_phenotype | 1194
differential hybridization evidence | PSI-MOD | 1287
Inferred from Sequence Orthology | biological_process | 1403
Inferred from Electronic Annotation | molecular_function | 1498
Inferred from Biological aspect of Ancestor | cellular_component | 1526
Inferred from high throughput mutant phenotype | molecular_function | 1535
Inferred from Biological aspect of Ancestor | molecular_function | 1843
Chromatin immunoprecipitation experiment | fission_yeast_phenotype | 1977
Inferred from Biological aspect of Ancestor | biological_process | 2004
Inferred from Direct Assay | molecular_function | 2021
Other | fission_yeast_phenotype | 2146
cell viability assay evidence | fission_yeast_phenotype | 2163
Flow cytometry data | fission_yeast_phenotype | 2171
Enzyme assay data | fission_yeast_phenotype | 2308
gel electrophoresis evidence | fission_yeast_phenotype | 2516
reporter gene assay evidence | fission_yeast_phenotype | 2999
Inferred from Direct Assay | PSI-MOD | 3197
mass spectrometry evidence | PSI-MOD | 3201
Inferred from Physical Interaction | molecular_function | 3229
expression microarray evidence | PomGeneExRNA | 3521
Inferred from Mutant Phenotype | biological_process | 3652
RNA-sequencing evidence | PomGeneExRNA | 3734
transcript expression level evidence | fission_yeast_phenotype | 4277
Western blot assay | fission_yeast_phenotype | 4577
Inferred from Direct Assay | cellular_component | 5706
Inferred from high throughput direct assay | cellular_component | 6739
experimental evidence | PSI-MOD | 8141
mass spectrometry evidence | gene_ex | 13682
experimental evidence | gene_ex | 19958
microscopy evidence | fission_yeast_phenotype | 38218
cell growth assay evidence | fission_yeast_phenotype | 39753
tryptic phosphopeptide mapping assay evidence used in automatic assertion | PSI-MOD | 44307
(131 rows)
annotation counts by evidence code and cv type, sorted by cv evidence code:
ev_code | cv_name | count
----------------------------------------------------------------------------------+--------------------------+-------
Chromatin immunoprecipitation experiment | fission_yeast_phenotype | 1977
Chromatography evidence | fission_yeast_phenotype | 70
Co-immunoprecipitation experiment | fission_yeast_phenotype | 1081
Electrophoretic mobility shift assay data | fission_yeast_phenotype | 230
Enzyme assay data | fission_yeast_phenotype | 2308
Epitope-tagged protein immunolocalization experiment data | fission_yeast_phenotype | 55
Flow cytometry data | fission_yeast_phenotype | 2171
Immunolocalization experiment data | fission_yeast_phenotype | 23
Inferred by Curator | biological_process | 953
Inferred by Curator | cellular_component | 521
Inferred by Curator | molecular_function | 198
Inferred from Biological aspect of Ancestor | biological_process | 2004
Inferred from Biological aspect of Ancestor | cellular_component | 1526
Inferred from Biological aspect of Ancestor | molecular_function | 1843
Inferred from Direct Assay | PSI-MOD | 3197
Inferred from Direct Assay | biological_process | 657
Inferred from Direct Assay | cellular_component | 5706
Inferred from Direct Assay | misc | 1
Inferred from Direct Assay | molecular_function | 2021
Inferred from Direct Assay | sequence | 2
Inferred from Direct Assay | subunit_composition | 4
Inferred from Electronic Annotation | biological_process | 398
Inferred from Electronic Annotation | cellular_component | 277
Inferred from Electronic Annotation | molecular_function | 1498
Inferred from Experiment | biological_process | 463
Inferred from Experiment | cellular_component | 410
Inferred from Experiment | molecular_function | 748
Inferred from Experiment | sequence | 7
Inferred from Expression Pattern | biological_process | 19
Inferred from Genetic Interaction | biological_process | 536
Inferred from Genetic Interaction | cellular_component | 45
Inferred from Genetic Interaction | molecular_function | 125
Inferred from Key Residues | molecular_function | 1
Inferred from Mutant Phenotype | PSI-MOD | 1
Inferred from Mutant Phenotype | biological_process | 3652
Inferred from Mutant Phenotype | cellular_component | 58
Inferred from Mutant Phenotype | misc | 4
Inferred from Mutant Phenotype | molecular_function | 862
Inferred from Mutant Phenotype | sequence | 10
Inferred from Physical Interaction | biological_process | 66
Inferred from Physical Interaction | cellular_component | 291
Inferred from Physical Interaction | misc | 2
Inferred from Physical Interaction | molecular_function | 3229
Inferred from Sequence Model | PSI-MOD | 2
Inferred from Sequence Model | biological_process | 133
Inferred from Sequence Model | cellular_component | 77
Inferred from Sequence Model | molecular_function | 1072
Inferred from Sequence Orthology | biological_process | 1403
Inferred from Sequence Orthology | cellular_component | 943
Inferred from Sequence Orthology | molecular_function | 833
Inferred from Sequence or Structural Similarity | PSI-MOD | 101
Inferred from Sequence or Structural Similarity | PomBase family or domain | 6
Inferred from Sequence or Structural Similarity | biological_process | 416
Inferred from Sequence or Structural Similarity | cellular_component | 253
Inferred from Sequence or Structural Similarity | genome_org | 11
Inferred from Sequence or Structural Similarity | m_f_g | 41
Inferred from Sequence or Structural Similarity | misc | 1
Inferred from Sequence or Structural Similarity | molecular_function | 332
Inferred from Sequence or Structural Similarity | sequence | 354
Inferred from Sequence or Structural Similarity | subunit_composition | 1
Inferred from Sequence or Structural Similarity | warning | 66
Inferred from high throughput direct assay | cellular_component | 6739
Inferred from high throughput direct assay | molecular_function | 17
Inferred from high throughput mutant phenotype | molecular_function | 1535
Non-traceable Author Statement | biological_process | 382
Non-traceable Author Statement | cellular_component | 99
Non-traceable Author Statement | complementation | 1
Non-traceable Author Statement | molecular_function | 176
Northern assay evidence | PomGeneExRNA | 114
Northern assay evidence | fission_yeast_phenotype | 117
Other | fission_yeast_phenotype | 2146
Other direct assay | fission_yeast_phenotype | 8
Particle size and count assay | fission_yeast_phenotype | 34
Plasmid maintenance assay evidence | fission_yeast_phenotype | 85
RNA detection assay evidence | gene_ex | 2
RNA protection assay evidence | PomGeneExRNA | 58
RNA-sequencing evidence | PomGeneExRNA | 3734
Substance quantification evidence | fission_yeast_phenotype | 1159
Traceable Author Statement | PSI-MOD | 1
Traceable Author Statement | PomBase family or domain | 5
Traceable Author Statement | biological_process | 124
Traceable Author Statement | cellular_component | 75
Traceable Author Statement | molecular_function | 133
Traceable Author Statement | sequence | 2
Western blot assay | fission_yeast_phenotype | 4577
Western blot evidence | PomGeneExProt | 67
cell growth assay evidence | fission_yeast_phenotype | 39753
cell viability assay evidence | fission_yeast_phenotype | 2163
competitive growth assay evidence | fission_yeast_phenotype | 1194
differential hybridization evidence | PSI-MOD | 1287
differential hybridization evidence | PomGeneExRNA | 1
experimental evidence | PSI-MOD | 8141
experimental evidence | PomGeneExProt | 1
experimental evidence | PomGeneExRNA | 198
experimental evidence | gene_ex | 19958
experimental phenotypic evidence | fission_yeast_phenotype | 493
expression microarray evidence | PomGeneExRNA | 3521
fusion protein localization evidence | PomGeneExProt | 11
gel electrophoresis evidence | fission_yeast_phenotype | 2516
high throughput nucleotide sequencing assay evidence | fission_yeast_phenotype | 206
immunofluorescence evidence | PomGeneExProt | 6
in situ hybridization assay evidence | gene_ex | 14
in situ hybridization evidence used in manual assertion | PomGeneExRNA | 5
mass spectrometry evidence | PSI-MOD | 3201
mass spectrometry evidence | PomGeneExProt | 614
mass spectrometry evidence | gene_ex | 13682
microscopy evidence | PomGeneExProt | 6
microscopy evidence | fission_yeast_phenotype | 38218
microscopy evidence | gene_ex | 9
microscopy evidence used in manual assertion | fission_yeast_phenotype | 659
northern assay evidence used in manual assertion | PomGeneExProt | 5
northern assay evidence used in manual assertion | PomGeneExRNA | 796
protein expression level evidence based on western blot used in manual assertion | gene_ex | 2
quantitative PCR | PomGeneExProt | 3
quantitative PCR | PomGeneExRNA | 130
quantitative PCR | fission_yeast_phenotype | 976
quantitative polymerase chain reaction evidence used in manual assertion | PomGeneExRNA | 8
reporter gene assay evidence | PomGeneExProt | 136
reporter gene assay evidence | PomGeneExRNA | 12
reporter gene assay evidence | fission_yeast_phenotype | 2999
reverse transcription polymerase chain reaction transcription evidence | PomGeneExRNA | 60
ribosome profiling evidence | PomGeneExRD | 730
sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | PomGeneExProt | 2
sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | fission_yeast_phenotype | 22
transcript expression level evidence | PomGeneExRNA | 16
transcript expression level evidence | fission_yeast_phenotype | 4277
tryptic phosphopeptide mapping assay evidence used in automatic assertion | PSI-MOD | 44307
tryptic phosphopeptide mapping assay evidence used in automatic assertion | fission_yeast_phenotype | 149
western blot evidence used in manual assertion | PomGeneExProt | 437
western blot evidence used in manual assertion | PomGeneExRNA | 13
western blot evidence used in manual assertion | fission_yeast_phenotype | 147
(131 rows)
total:
count
--------
371691
(1 row)
counts of annotation from Canto, by type:
count | cv_name
-------+------------------------------------
7 | sequence
52 | PomGeneExProt
259 | PomGeneExRNA
2268 | PSI-MOD
4330 | biological_process
4688 | molecular_function
5486 | cellular_component
36680 | PomBase annotation extension terms
70827 | fission_yeast_phenotype
(9 rows)
total
-------
87917
(1 row)