line 2 is too short: the value for --reference-column is 2
line 3 is too short: the value for --reference-column is 2
line 4 is too short: the value for --reference-column is 2
line 5 is too short: the value for --reference-column is 2
line 6 is too short: the value for --reference-column is 2
line 11 is too short: the value for --reference-column is 2
can't find feature with name "alp7-5A(S50A,S51A,T100A,T116A,T131A)" at line 85 - skipping
can't find feature with name "alp7-5A(K341,Y344,R346,K347,Y348)" at line 86 - skipping