counts of all annotation by type:
count | cv_name
--------+--------------------------------------
6 | external_link
22 | ex_tools
27 | pathway
27 | cat_act
76 | m_f_g
161 | genome_org
195 | subunit_composition
411 | EC numbers
444 | misc
458 | complementation
731 | PomGeneExRD
1004 | name_description
1322 | PomGeneExProt
1666 | sequence
1698 | warning
1865 | pombase_family_or_domain
3322 | mondo
5144 | PomBase gene characterisation status
9008 | PomGeneExRNA
11519 | biological_process
14455 | molecular_function
17581 | cellular_component
25181 | species_dist
33667 | gene_ex
67130 | PSI-MOD
68275 | PomBase gene products
191188 | fission_yeast_phenotype
(27 rows)
annotation counts by evidence code and cv type, sorted by cv name:
ev_code | cv_name | count
----------------------------------------------------------------------------------+--------------------------+--------
Inferred from Direct Assay | PSI-MOD | 3282
Inferred from Mutant Phenotype | PSI-MOD | 1
Inferred from Sequence Model | PSI-MOD | 2
Inferred from Sequence or Structural Similarity | PSI-MOD | 100
Traceable Author Statement | PSI-MOD | 1
Unknown | PSI-MOD | 45
curator inference used in manual assertion | PSI-MOD | 16
differential hybridization evidence | PSI-MOD | 1287
experimental evidence | PSI-MOD | 8139
experimental evidence used in manual assertion | PSI-MOD | 5
mass spectrometry evidence | PSI-MOD | 8353
match to sequence model evidence used in manual assertion | PSI-MOD | 1262
neural network method evidence used in manual assertion | PSI-MOD | 47
sequence similarity evidence used in manual assertion | PSI-MOD | 102
tryptic phosphopeptide mapping assay evidence used in automatic assertion | PSI-MOD | 44488
Western blot evidence | PomGeneExProt | 86
experimental evidence | PomGeneExProt | 1
fusion protein localization evidence | PomGeneExProt | 11
immunofluorescence evidence | PomGeneExProt | 6
mass spectrometry evidence | PomGeneExProt | 614
microscopy evidence | PomGeneExProt | 15
northern assay evidence used in manual assertion | PomGeneExProt | 5
quantitative PCR | PomGeneExProt | 3
reporter gene assay evidence | PomGeneExProt | 136
sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | PomGeneExProt | 2
western blot evidence used in manual assertion | PomGeneExProt | 437
ribosome profiling evidence | PomGeneExRD | 731
Northern assay evidence | PomGeneExRNA | 124
RNA protection assay evidence | PomGeneExRNA | 58
RNA-sequencing evidence | PomGeneExRNA | 3971
differential hybridization evidence | PomGeneExRNA | 1
experimental evidence | PomGeneExRNA | 198
expression microarray evidence | PomGeneExRNA | 3588
in situ hybridization evidence used in manual assertion | PomGeneExRNA | 5
northern assay evidence used in manual assertion | PomGeneExRNA | 796
quantitative PCR | PomGeneExRNA | 141
quantitative polymerase chain reaction evidence used in manual assertion | PomGeneExRNA | 8
reporter gene assay evidence | PomGeneExRNA | 12
reverse transcription polymerase chain reaction transcription evidence | PomGeneExRNA | 60
transcript expression level evidence | PomGeneExRNA | 16
western blot evidence used in manual assertion | PomGeneExRNA | 13
Inferred by Curator | biological_process | 882
Inferred from Biological aspect of Ancestor | biological_process | 2400
Inferred from Direct Assay | biological_process | 660
Inferred from Electronic Annotation | biological_process | 294
Inferred from Experiment | biological_process | 744
Inferred from Expression Pattern | biological_process | 8
Inferred from Genetic Interaction | biological_process | 528
Inferred from Mutant Phenotype | biological_process | 3703
Inferred from Physical Interaction | biological_process | 58
Inferred from Sequence Model | biological_process | 124
Inferred from Sequence Orthology | biological_process | 1316
Inferred from Sequence or Structural Similarity | biological_process | 368
Non-traceable Author Statement | biological_process | 291
Traceable Author Statement | biological_process | 143
Inferred by Curator | cellular_component | 544
Inferred from Biological aspect of Ancestor | cellular_component | 1910
Inferred from Direct Assay | cellular_component | 6100
Inferred from Electronic Annotation | cellular_component | 185
Inferred from Experiment | cellular_component | 508
Inferred from Genetic Interaction | cellular_component | 45
Inferred from Mutant Phenotype | cellular_component | 59
Inferred from Physical Interaction | cellular_component | 288
Inferred from Sequence Model | cellular_component | 57
Inferred from Sequence Orthology | cellular_component | 799
Inferred from Sequence or Structural Similarity | cellular_component | 234
Inferred from high throughput direct assay | cellular_component | 6666
Non-traceable Author Statement | cellular_component | 87
Traceable Author Statement | cellular_component | 99
Non-traceable Author Statement | complementation | 1
Chromatin immunoprecipitation experiment | fission_yeast_phenotype | 2577
Chromatography evidence | fission_yeast_phenotype | 76
Co-immunoprecipitation experiment | fission_yeast_phenotype | 1233
Electrophoretic mobility shift assay data | fission_yeast_phenotype | 253
Enzyme assay data | fission_yeast_phenotype | 2499
Epitope-tagged protein immunolocalization experiment data | fission_yeast_phenotype | 55
Flow cytometry data | fission_yeast_phenotype | 2197
Immunolocalization experiment data | fission_yeast_phenotype | 23
Northern assay evidence | fission_yeast_phenotype | 117
Other | fission_yeast_phenotype | 2477
Other direct assay | fission_yeast_phenotype | 8
Particle size and count assay | fission_yeast_phenotype | 39
Plasmid maintenance assay evidence | fission_yeast_phenotype | 85
Substance quantification evidence | fission_yeast_phenotype | 1226
Western blot assay | fission_yeast_phenotype | 4881
cell growth assay evidence | fission_yeast_phenotype | 116475
cell viability assay evidence | fission_yeast_phenotype | 2163
competitive growth assay evidence | fission_yeast_phenotype | 1195
experimental phenotypic evidence | fission_yeast_phenotype | 493
gel electrophoresis evidence | fission_yeast_phenotype | 2606
high throughput nucleotide sequencing assay evidence | fission_yeast_phenotype | 206
microscopy evidence | fission_yeast_phenotype | 39555
microscopy evidence used in manual assertion | fission_yeast_phenotype | 659
quantitative PCR | fission_yeast_phenotype | 1232
reporter gene assay evidence | fission_yeast_phenotype | 3560
sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | fission_yeast_phenotype | 22
transcript expression level evidence | fission_yeast_phenotype | 4980
tryptic phosphopeptide mapping assay evidence used in automatic assertion | fission_yeast_phenotype | 149
western blot evidence used in manual assertion | fission_yeast_phenotype | 147
RNA detection assay evidence | gene_ex | 2
experimental evidence | gene_ex | 19958
in situ hybridization assay evidence | gene_ex | 14
mass spectrometry evidence | gene_ex | 13682
microscopy evidence | gene_ex | 9
protein expression level evidence based on western blot used in manual assertion | gene_ex | 2
Inferred from Sequence or Structural Similarity | genome_org | 11
Inferred from Sequence or Structural Similarity | m_f_g | 41
Inferred from Direct Assay | misc | 1
Inferred from Mutant Phenotype | misc | 4
Inferred from Physical Interaction | misc | 2
Inferred from Sequence or Structural Similarity | misc | 1
Inferred by Curator | molecular_function | 197
Inferred from Biological aspect of Ancestor | molecular_function | 2363
Inferred from Direct Assay | molecular_function | 2111
Inferred from Electronic Annotation | molecular_function | 1407
Inferred from Experiment | molecular_function | 1083
Inferred from Genetic Interaction | molecular_function | 128
Inferred from Key Residues | molecular_function | 1
Inferred from Mutant Phenotype | molecular_function | 1058
Inferred from Physical Interaction | molecular_function | 2391
Inferred from Sequence Model | molecular_function | 944
Inferred from Sequence Orthology | molecular_function | 682
Inferred from Sequence or Structural Similarity | molecular_function | 286
Inferred from high throughput direct assay | molecular_function | 17
Inferred from high throughput mutant phenotype | molecular_function | 1535
Non-traceable Author Statement | molecular_function | 110
Traceable Author Statement | molecular_function | 142
Inferred from Sequence or Structural Similarity | pombase_family_or_domain | 6
Traceable Author Statement | pombase_family_or_domain | 5
Inferred from Experiment | sequence | 8
author statement supported by traceable reference used in manual assertion | sequence | 1
curator inference used in manual assertion | sequence | 3
direct assay evidence used in manual assertion | sequence | 7
experimental evidence used in manual assertion | sequence | 2
match to sequence model evidence | sequence | 939
match to sequence model evidence used in manual assertion | sequence | 224
mutant phenotype evidence used in manual assertion | sequence | 10
sequence similarity evidence | sequence | 25
sequence similarity evidence used in manual assertion | sequence | 372
Inferred from Direct Assay | subunit_composition | 4
Inferred from Sequence or Structural Similarity | subunit_composition | 1
Inferred from Sequence or Structural Similarity | warning | 65
(142 rows)
annotation counts by evidence code and cv type, sorted by count:
ev_code | cv_name | count
----------------------------------------------------------------------------------+--------------------------+--------
Inferred from Sequence or Structural Similarity | subunit_composition | 1
Inferred from Direct Assay | misc | 1
differential hybridization evidence | PomGeneExRNA | 1
Inferred from Key Residues | molecular_function | 1
Inferred from Sequence or Structural Similarity | misc | 1
author statement supported by traceable reference used in manual assertion | sequence | 1
experimental evidence | PomGeneExProt | 1
Non-traceable Author Statement | complementation | 1
Traceable Author Statement | PSI-MOD | 1
Inferred from Mutant Phenotype | PSI-MOD | 1
RNA detection assay evidence | gene_ex | 2
Inferred from Sequence Model | PSI-MOD | 2
protein expression level evidence based on western blot used in manual assertion | gene_ex | 2
Inferred from Physical Interaction | misc | 2
experimental evidence used in manual assertion | sequence | 2
sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | PomGeneExProt | 2
quantitative PCR | PomGeneExProt | 3
curator inference used in manual assertion | sequence | 3
Inferred from Direct Assay | subunit_composition | 4
Inferred from Mutant Phenotype | misc | 4
northern assay evidence used in manual assertion | PomGeneExProt | 5
in situ hybridization evidence used in manual assertion | PomGeneExRNA | 5
experimental evidence used in manual assertion | PSI-MOD | 5
Traceable Author Statement | pombase_family_or_domain | 5
immunofluorescence evidence | PomGeneExProt | 6
Inferred from Sequence or Structural Similarity | pombase_family_or_domain | 6
direct assay evidence used in manual assertion | sequence | 7
Inferred from Experiment | sequence | 8
quantitative polymerase chain reaction evidence used in manual assertion | PomGeneExRNA | 8
Inferred from Expression Pattern | biological_process | 8
Other direct assay | fission_yeast_phenotype | 8
microscopy evidence | gene_ex | 9
mutant phenotype evidence used in manual assertion | sequence | 10
Inferred from Sequence or Structural Similarity | genome_org | 11
fusion protein localization evidence | PomGeneExProt | 11
reporter gene assay evidence | PomGeneExRNA | 12
western blot evidence used in manual assertion | PomGeneExRNA | 13
in situ hybridization assay evidence | gene_ex | 14
microscopy evidence | PomGeneExProt | 15
curator inference used in manual assertion | PSI-MOD | 16
transcript expression level evidence | PomGeneExRNA | 16
Inferred from high throughput direct assay | molecular_function | 17
sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | fission_yeast_phenotype | 22
Immunolocalization experiment data | fission_yeast_phenotype | 23
sequence similarity evidence | sequence | 25
Particle size and count assay | fission_yeast_phenotype | 39
Inferred from Sequence or Structural Similarity | m_f_g | 41
Inferred from Genetic Interaction | cellular_component | 45
Unknown | PSI-MOD | 45
neural network method evidence used in manual assertion | PSI-MOD | 47
Epitope-tagged protein immunolocalization experiment data | fission_yeast_phenotype | 55
Inferred from Sequence Model | cellular_component | 57
Inferred from Physical Interaction | biological_process | 58
RNA protection assay evidence | PomGeneExRNA | 58
Inferred from Mutant Phenotype | cellular_component | 59
reverse transcription polymerase chain reaction transcription evidence | PomGeneExRNA | 60
Inferred from Sequence or Structural Similarity | warning | 65
Chromatography evidence | fission_yeast_phenotype | 76
Plasmid maintenance assay evidence | fission_yeast_phenotype | 85
Western blot evidence | PomGeneExProt | 86
Non-traceable Author Statement | cellular_component | 87
Traceable Author Statement | cellular_component | 99
Inferred from Sequence or Structural Similarity | PSI-MOD | 100
sequence similarity evidence used in manual assertion | PSI-MOD | 102
Non-traceable Author Statement | molecular_function | 110
Northern assay evidence | fission_yeast_phenotype | 117
Inferred from Sequence Model | biological_process | 124
Northern assay evidence | PomGeneExRNA | 124
Inferred from Genetic Interaction | molecular_function | 128
reporter gene assay evidence | PomGeneExProt | 136
quantitative PCR | PomGeneExRNA | 141
Traceable Author Statement | molecular_function | 142
Traceable Author Statement | biological_process | 143
western blot evidence used in manual assertion | fission_yeast_phenotype | 147
tryptic phosphopeptide mapping assay evidence used in automatic assertion | fission_yeast_phenotype | 149
Inferred from Electronic Annotation | cellular_component | 185
Inferred by Curator | molecular_function | 197
experimental evidence | PomGeneExRNA | 198
high throughput nucleotide sequencing assay evidence | fission_yeast_phenotype | 206
match to sequence model evidence used in manual assertion | sequence | 224
Inferred from Sequence or Structural Similarity | cellular_component | 234
Electrophoretic mobility shift assay data | fission_yeast_phenotype | 253
Inferred from Sequence or Structural Similarity | molecular_function | 286
Inferred from Physical Interaction | cellular_component | 288
Non-traceable Author Statement | biological_process | 291
Inferred from Electronic Annotation | biological_process | 294
Inferred from Sequence or Structural Similarity | biological_process | 368
sequence similarity evidence used in manual assertion | sequence | 372
western blot evidence used in manual assertion | PomGeneExProt | 437
experimental phenotypic evidence | fission_yeast_phenotype | 493
Inferred from Experiment | cellular_component | 508
Inferred from Genetic Interaction | biological_process | 528
Inferred by Curator | cellular_component | 544
mass spectrometry evidence | PomGeneExProt | 614
microscopy evidence used in manual assertion | fission_yeast_phenotype | 659
Inferred from Direct Assay | biological_process | 660
Inferred from Sequence Orthology | molecular_function | 682
ribosome profiling evidence | PomGeneExRD | 731
Inferred from Experiment | biological_process | 744
northern assay evidence used in manual assertion | PomGeneExRNA | 796
Inferred from Sequence Orthology | cellular_component | 799
Inferred by Curator | biological_process | 882
match to sequence model evidence | sequence | 939
Inferred from Sequence Model | molecular_function | 944
Inferred from Mutant Phenotype | molecular_function | 1058
Inferred from Experiment | molecular_function | 1083
competitive growth assay evidence | fission_yeast_phenotype | 1195
Substance quantification evidence | fission_yeast_phenotype | 1226
quantitative PCR | fission_yeast_phenotype | 1232
Co-immunoprecipitation experiment | fission_yeast_phenotype | 1233
match to sequence model evidence used in manual assertion | PSI-MOD | 1262
differential hybridization evidence | PSI-MOD | 1287
Inferred from Sequence Orthology | biological_process | 1316
Inferred from Electronic Annotation | molecular_function | 1407
Inferred from high throughput mutant phenotype | molecular_function | 1535
Inferred from Biological aspect of Ancestor | cellular_component | 1910
Inferred from Direct Assay | molecular_function | 2111
cell viability assay evidence | fission_yeast_phenotype | 2163
Flow cytometry data | fission_yeast_phenotype | 2197
Inferred from Biological aspect of Ancestor | molecular_function | 2363
Inferred from Physical Interaction | molecular_function | 2391
Inferred from Biological aspect of Ancestor | biological_process | 2400
Other | fission_yeast_phenotype | 2477
Enzyme assay data | fission_yeast_phenotype | 2499
Chromatin immunoprecipitation experiment | fission_yeast_phenotype | 2577
gel electrophoresis evidence | fission_yeast_phenotype | 2606
Inferred from Direct Assay | PSI-MOD | 3282
reporter gene assay evidence | fission_yeast_phenotype | 3560
expression microarray evidence | PomGeneExRNA | 3588
Inferred from Mutant Phenotype | biological_process | 3703
RNA-sequencing evidence | PomGeneExRNA | 3971
Western blot assay | fission_yeast_phenotype | 4881
transcript expression level evidence | fission_yeast_phenotype | 4980
Inferred from Direct Assay | cellular_component | 6100
Inferred from high throughput direct assay | cellular_component | 6666
experimental evidence | PSI-MOD | 8139
mass spectrometry evidence | PSI-MOD | 8353
mass spectrometry evidence | gene_ex | 13682
experimental evidence | gene_ex | 19958
microscopy evidence | fission_yeast_phenotype | 39555
tryptic phosphopeptide mapping assay evidence used in automatic assertion | PSI-MOD | 44488
cell growth assay evidence | fission_yeast_phenotype | 116475
(142 rows)
annotation counts by evidence code and cv type, sorted by cv evidence code:
ev_code | cv_name | count
----------------------------------------------------------------------------------+--------------------------+--------
Chromatin immunoprecipitation experiment | fission_yeast_phenotype | 2577
Chromatography evidence | fission_yeast_phenotype | 76
Co-immunoprecipitation experiment | fission_yeast_phenotype | 1233
Electrophoretic mobility shift assay data | fission_yeast_phenotype | 253
Enzyme assay data | fission_yeast_phenotype | 2499
Epitope-tagged protein immunolocalization experiment data | fission_yeast_phenotype | 55
Flow cytometry data | fission_yeast_phenotype | 2197
Immunolocalization experiment data | fission_yeast_phenotype | 23
Inferred by Curator | biological_process | 882
Inferred by Curator | cellular_component | 544
Inferred by Curator | molecular_function | 197
Inferred from Biological aspect of Ancestor | biological_process | 2400
Inferred from Biological aspect of Ancestor | cellular_component | 1910
Inferred from Biological aspect of Ancestor | molecular_function | 2363
Inferred from Direct Assay | PSI-MOD | 3282
Inferred from Direct Assay | biological_process | 660
Inferred from Direct Assay | cellular_component | 6100
Inferred from Direct Assay | misc | 1
Inferred from Direct Assay | molecular_function | 2111
Inferred from Direct Assay | subunit_composition | 4
Inferred from Electronic Annotation | biological_process | 294
Inferred from Electronic Annotation | cellular_component | 185
Inferred from Electronic Annotation | molecular_function | 1407
Inferred from Experiment | biological_process | 744
Inferred from Experiment | cellular_component | 508
Inferred from Experiment | molecular_function | 1083
Inferred from Experiment | sequence | 8
Inferred from Expression Pattern | biological_process | 8
Inferred from Genetic Interaction | biological_process | 528
Inferred from Genetic Interaction | cellular_component | 45
Inferred from Genetic Interaction | molecular_function | 128
Inferred from Key Residues | molecular_function | 1
Inferred from Mutant Phenotype | PSI-MOD | 1
Inferred from Mutant Phenotype | biological_process | 3703
Inferred from Mutant Phenotype | cellular_component | 59
Inferred from Mutant Phenotype | misc | 4
Inferred from Mutant Phenotype | molecular_function | 1058
Inferred from Physical Interaction | biological_process | 58
Inferred from Physical Interaction | cellular_component | 288
Inferred from Physical Interaction | misc | 2
Inferred from Physical Interaction | molecular_function | 2391
Inferred from Sequence Model | PSI-MOD | 2
Inferred from Sequence Model | biological_process | 124
Inferred from Sequence Model | cellular_component | 57
Inferred from Sequence Model | molecular_function | 944
Inferred from Sequence Orthology | biological_process | 1316
Inferred from Sequence Orthology | cellular_component | 799
Inferred from Sequence Orthology | molecular_function | 682
Inferred from Sequence or Structural Similarity | PSI-MOD | 100
Inferred from Sequence or Structural Similarity | biological_process | 368
Inferred from Sequence or Structural Similarity | cellular_component | 234
Inferred from Sequence or Structural Similarity | genome_org | 11
Inferred from Sequence or Structural Similarity | m_f_g | 41
Inferred from Sequence or Structural Similarity | misc | 1
Inferred from Sequence or Structural Similarity | molecular_function | 286
Inferred from Sequence or Structural Similarity | pombase_family_or_domain | 6
Inferred from Sequence or Structural Similarity | subunit_composition | 1
Inferred from Sequence or Structural Similarity | warning | 65
Inferred from high throughput direct assay | cellular_component | 6666
Inferred from high throughput direct assay | molecular_function | 17
Inferred from high throughput mutant phenotype | molecular_function | 1535
Non-traceable Author Statement | biological_process | 291
Non-traceable Author Statement | cellular_component | 87
Non-traceable Author Statement | complementation | 1
Non-traceable Author Statement | molecular_function | 110
Northern assay evidence | PomGeneExRNA | 124
Northern assay evidence | fission_yeast_phenotype | 117
Other | fission_yeast_phenotype | 2477
Other direct assay | fission_yeast_phenotype | 8
Particle size and count assay | fission_yeast_phenotype | 39
Plasmid maintenance assay evidence | fission_yeast_phenotype | 85
RNA detection assay evidence | gene_ex | 2
RNA protection assay evidence | PomGeneExRNA | 58
RNA-sequencing evidence | PomGeneExRNA | 3971
Substance quantification evidence | fission_yeast_phenotype | 1226
Traceable Author Statement | PSI-MOD | 1
Traceable Author Statement | biological_process | 143
Traceable Author Statement | cellular_component | 99
Traceable Author Statement | molecular_function | 142
Traceable Author Statement | pombase_family_or_domain | 5
Unknown | PSI-MOD | 45
Western blot assay | fission_yeast_phenotype | 4881
Western blot evidence | PomGeneExProt | 86
author statement supported by traceable reference used in manual assertion | sequence | 1
cell growth assay evidence | fission_yeast_phenotype | 116475
cell viability assay evidence | fission_yeast_phenotype | 2163
competitive growth assay evidence | fission_yeast_phenotype | 1195
curator inference used in manual assertion | PSI-MOD | 16
curator inference used in manual assertion | sequence | 3
differential hybridization evidence | PSI-MOD | 1287
differential hybridization evidence | PomGeneExRNA | 1
direct assay evidence used in manual assertion | sequence | 7
experimental evidence | PSI-MOD | 8139
experimental evidence | PomGeneExProt | 1
experimental evidence | PomGeneExRNA | 198
experimental evidence | gene_ex | 19958
experimental evidence used in manual assertion | PSI-MOD | 5
experimental evidence used in manual assertion | sequence | 2
experimental phenotypic evidence | fission_yeast_phenotype | 493
expression microarray evidence | PomGeneExRNA | 3588
fusion protein localization evidence | PomGeneExProt | 11
gel electrophoresis evidence | fission_yeast_phenotype | 2606
high throughput nucleotide sequencing assay evidence | fission_yeast_phenotype | 206
immunofluorescence evidence | PomGeneExProt | 6
in situ hybridization assay evidence | gene_ex | 14
in situ hybridization evidence used in manual assertion | PomGeneExRNA | 5
mass spectrometry evidence | PSI-MOD | 8353
mass spectrometry evidence | PomGeneExProt | 614
mass spectrometry evidence | gene_ex | 13682
match to sequence model evidence | sequence | 939
match to sequence model evidence used in manual assertion | PSI-MOD | 1262
match to sequence model evidence used in manual assertion | sequence | 224
microscopy evidence | PomGeneExProt | 15
microscopy evidence | fission_yeast_phenotype | 39555
microscopy evidence | gene_ex | 9
microscopy evidence used in manual assertion | fission_yeast_phenotype | 659
mutant phenotype evidence used in manual assertion | sequence | 10
neural network method evidence used in manual assertion | PSI-MOD | 47
northern assay evidence used in manual assertion | PomGeneExProt | 5
northern assay evidence used in manual assertion | PomGeneExRNA | 796
protein expression level evidence based on western blot used in manual assertion | gene_ex | 2
quantitative PCR | PomGeneExProt | 3
quantitative PCR | PomGeneExRNA | 141
quantitative PCR | fission_yeast_phenotype | 1232
quantitative polymerase chain reaction evidence used in manual assertion | PomGeneExRNA | 8
reporter gene assay evidence | PomGeneExProt | 136
reporter gene assay evidence | PomGeneExRNA | 12
reporter gene assay evidence | fission_yeast_phenotype | 3560
reverse transcription polymerase chain reaction transcription evidence | PomGeneExRNA | 60
ribosome profiling evidence | PomGeneExRD | 731
sequence similarity evidence | sequence | 25
sequence similarity evidence used in manual assertion | PSI-MOD | 102
sequence similarity evidence used in manual assertion | sequence | 372
sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | PomGeneExProt | 2
sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | fission_yeast_phenotype | 22
transcript expression level evidence | PomGeneExRNA | 16
transcript expression level evidence | fission_yeast_phenotype | 4980
tryptic phosphopeptide mapping assay evidence used in automatic assertion | PSI-MOD | 44488
tryptic phosphopeptide mapping assay evidence used in automatic assertion | fission_yeast_phenotype | 149
western blot evidence used in manual assertion | PomGeneExProt | 437
western blot evidence used in manual assertion | PomGeneExRNA | 13
western blot evidence used in manual assertion | fission_yeast_phenotype | 147
(142 rows)
total:
count
--------
456583
(1 row)
counts of annotation from Canto, by type:
count | cv_name
-------+------------------------------------
8 | sequence
80 | PomGeneExProt
442 | PomGeneExRNA
2368 | PSI-MOD
4753 | biological_process
5243 | molecular_function
5998 | cellular_component
41852 | PomBase annotation extension terms
77098 | fission_yeast_phenotype
(9 rows)
total
-------
95990
(1 row)