counts of all annotation by type:
count | cv_name
--------+--------------------------------------
6 | external_link
22 | ex_tools
27 | pathway
27 | cat_act
76 | m_f_g
161 | genome_org
195 | subunit_composition
411 | EC numbers
445 | misc
458 | complementation
731 | PomGeneExRD
1004 | name_description
1322 | PomGeneExProt
1666 | sequence
1698 | warning
1862 | pombase_family_or_domain
3317 | mondo
5144 | PomBase gene characterisation status
9024 | PomGeneExRNA
11531 | biological_process
14457 | molecular_function
17594 | cellular_component
25221 | species_dist
33667 | gene_ex
68203 | PomBase gene products
69582 | PSI-MOD
191417 | fission_yeast_phenotype
(27 rows)
annotation counts by evidence code and cv type, sorted by cv name:
ev_code | cv_name | count
----------------------------------------------------------------------------------+--------------------------+--------
Inferred from Direct Assay | PSI-MOD | 3282
Inferred from Mutant Phenotype | PSI-MOD | 1
Inferred from Sequence Model | PSI-MOD | 2
Inferred from Sequence or Structural Similarity | PSI-MOD | 100
Traceable Author Statement | PSI-MOD | 1
Unknown | PSI-MOD | 45
author statement without traceable support used in manual assertion | PSI-MOD | 1
combinatorial computational and experimental evidence used in manual assertion | PSI-MOD | 1
curator inference used in manual assertion | PSI-MOD | 22
differential hybridization evidence | PSI-MOD | 1287
experimental evidence | PSI-MOD | 8138
experimental evidence used in manual assertion | PSI-MOD | 2352
mass spectrometry evidence | PSI-MOD | 8352
match to sequence model evidence used in manual assertion | PSI-MOD | 1324
neural network method evidence used in manual assertion | PSI-MOD | 47
sequence similarity evidence used in manual assertion | PSI-MOD | 283
tryptic phosphopeptide mapping assay evidence used in automatic assertion | PSI-MOD | 44344
Western blot evidence | PomGeneExProt | 86
experimental evidence | PomGeneExProt | 1
fusion protein localization evidence | PomGeneExProt | 11
immunofluorescence evidence | PomGeneExProt | 6
mass spectrometry evidence | PomGeneExProt | 614
microscopy evidence | PomGeneExProt | 15
northern assay evidence used in manual assertion | PomGeneExProt | 5
quantitative PCR | PomGeneExProt | 3
reporter gene assay evidence | PomGeneExProt | 136
sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | PomGeneExProt | 2
western blot evidence used in manual assertion | PomGeneExProt | 437
ribosome profiling evidence | PomGeneExRD | 731
Northern assay evidence | PomGeneExRNA | 124
RNA protection assay evidence | PomGeneExRNA | 58
RNA-sequencing evidence | PomGeneExRNA | 3987
differential hybridization evidence | PomGeneExRNA | 1
experimental evidence | PomGeneExRNA | 198
expression microarray evidence | PomGeneExRNA | 3588
in situ hybridization evidence used in manual assertion | PomGeneExRNA | 5
northern assay evidence used in manual assertion | PomGeneExRNA | 796
quantitative PCR | PomGeneExRNA | 141
quantitative polymerase chain reaction evidence used in manual assertion | PomGeneExRNA | 8
reporter gene assay evidence | PomGeneExRNA | 12
reverse transcription polymerase chain reaction transcription evidence | PomGeneExRNA | 60
transcript expression level evidence | PomGeneExRNA | 16
western blot evidence used in manual assertion | PomGeneExRNA | 13
Inferred by Curator | biological_process | 884
Inferred from Biological aspect of Ancestor | biological_process | 2400
Inferred from Direct Assay | biological_process | 658
Inferred from Electronic Annotation | biological_process | 299
Inferred from Experiment | biological_process | 750
Inferred from Expression Pattern | biological_process | 7
Inferred from Genetic Interaction | biological_process | 528
Inferred from Mutant Phenotype | biological_process | 3709
Inferred from Physical Interaction | biological_process | 58
Inferred from Sequence Model | biological_process | 124
Inferred from Sequence Orthology | biological_process | 1311
Inferred from Sequence or Structural Similarity | biological_process | 370
Non-traceable Author Statement | biological_process | 290
Traceable Author Statement | biological_process | 143
Inferred by Curator | cellular_component | 544
Inferred from Biological aspect of Ancestor | cellular_component | 1907
Inferred from Direct Assay | cellular_component | 6115
Inferred from Electronic Annotation | cellular_component | 185
Inferred from Experiment | cellular_component | 511
Inferred from Genetic Interaction | cellular_component | 45
Inferred from Mutant Phenotype | cellular_component | 59
Inferred from Physical Interaction | cellular_component | 289
Inferred from Sequence Model | cellular_component | 57
Inferred from Sequence Orthology | cellular_component | 798
Inferred from Sequence or Structural Similarity | cellular_component | 234
Inferred from high throughput direct assay | cellular_component | 6664
Non-traceable Author Statement | cellular_component | 87
Traceable Author Statement | cellular_component | 99
Non-traceable Author Statement | complementation | 1
Chromatin immunoprecipitation experiment | fission_yeast_phenotype | 2565
Chromatography evidence | fission_yeast_phenotype | 82
Co-immunoprecipitation experiment | fission_yeast_phenotype | 1233
Electrophoretic mobility shift assay data | fission_yeast_phenotype | 254
Enzyme assay data | fission_yeast_phenotype | 2501
Epitope-tagged protein immunolocalization experiment data | fission_yeast_phenotype | 55
Flow cytometry data | fission_yeast_phenotype | 2197
Immunolocalization experiment data | fission_yeast_phenotype | 23
Northern assay evidence | fission_yeast_phenotype | 117
Other | fission_yeast_phenotype | 2475
Other direct assay | fission_yeast_phenotype | 8
Particle size and count assay | fission_yeast_phenotype | 39
Plasmid maintenance assay evidence | fission_yeast_phenotype | 85
Substance quantification | fission_yeast_phenotype | 1237
Western blot assay | fission_yeast_phenotype | 4888
cell growth assay evidence | fission_yeast_phenotype | 116507
cell viability assay evidence | fission_yeast_phenotype | 2163
competitive growth assay evidence | fission_yeast_phenotype | 1195
experimental phenotypic evidence | fission_yeast_phenotype | 493
gel electrophoresis evidence | fission_yeast_phenotype | 2606
high throughput nucleotide sequencing assay evidence | fission_yeast_phenotype | 206
microscopy evidence | fission_yeast_phenotype | 39649
microscopy evidence used in manual assertion | fission_yeast_phenotype | 659
quantitative PCR | fission_yeast_phenotype | 1239
reporter gene assay evidence | fission_yeast_phenotype | 3560
sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | fission_yeast_phenotype | 22
transcript expression level evidence | fission_yeast_phenotype | 5063
tryptic phosphopeptide mapping assay evidence used in automatic assertion | fission_yeast_phenotype | 149
western blot evidence used in manual assertion | fission_yeast_phenotype | 147
RNA detection assay evidence | gene_ex | 2
experimental evidence | gene_ex | 19958
in situ hybridization assay evidence | gene_ex | 14
mass spectrometry evidence | gene_ex | 13682
microscopy evidence | gene_ex | 9
protein expression level evidence based on western blot used in manual assertion | gene_ex | 2
Inferred from Sequence or Structural Similarity | genome_org | 11
Inferred from Sequence or Structural Similarity | m_f_g | 41
Inferred from Direct Assay | misc | 1
Inferred from Mutant Phenotype | misc | 4
Inferred from Physical Interaction | misc | 2
Inferred from Sequence or Structural Similarity | misc | 1
Inferred by Curator | molecular_function | 200
Inferred from Biological aspect of Ancestor | molecular_function | 2359
Inferred from Direct Assay | molecular_function | 2115
Inferred from Electronic Annotation | molecular_function | 1404
Inferred from Experiment | molecular_function | 1084
Inferred from Genetic Interaction | molecular_function | 127
Inferred from Key Residues | molecular_function | 1
Inferred from Mutant Phenotype | molecular_function | 1059
Inferred from Physical Interaction | molecular_function | 2393
Inferred from Sequence Model | molecular_function | 944
Inferred from Sequence Orthology | molecular_function | 681
Inferred from Sequence or Structural Similarity | molecular_function | 286
Inferred from high throughput direct assay | molecular_function | 17
Inferred from high throughput mutant phenotype | molecular_function | 1535
Non-traceable Author Statement | molecular_function | 109
Traceable Author Statement | molecular_function | 143
Inferred from Sequence or Structural Similarity | pombase_family_or_domain | 6
Traceable Author Statement | pombase_family_or_domain | 5
Inferred from Experiment | sequence | 8
author statement supported by traceable reference used in manual assertion | sequence | 1
curator inference used in manual assertion | sequence | 3
direct assay evidence used in manual assertion | sequence | 7
experimental evidence used in manual assertion | sequence | 2
match to sequence model evidence | sequence | 939
match to sequence model evidence used in manual assertion | sequence | 224
mutant phenotype evidence used in manual assertion | sequence | 10
sequence similarity evidence | sequence | 25
sequence similarity evidence used in manual assertion | sequence | 372
Inferred from Direct Assay | subunit_composition | 4
Inferred from Sequence or Structural Similarity | subunit_composition | 1
Inferred from Sequence or Structural Similarity | warning | 65
(144 rows)
annotation counts by evidence code and cv type, sorted by count:
ev_code | cv_name | count
----------------------------------------------------------------------------------+--------------------------+--------
experimental evidence | PomGeneExProt | 1
Inferred from Sequence or Structural Similarity | misc | 1
Inferred from Direct Assay | misc | 1
author statement supported by traceable reference used in manual assertion | sequence | 1
differential hybridization evidence | PomGeneExRNA | 1
Non-traceable Author Statement | complementation | 1
Inferred from Key Residues | molecular_function | 1
Inferred from Mutant Phenotype | PSI-MOD | 1
Inferred from Sequence or Structural Similarity | subunit_composition | 1
combinatorial computational and experimental evidence used in manual assertion | PSI-MOD | 1
Traceable Author Statement | PSI-MOD | 1
author statement without traceable support used in manual assertion | PSI-MOD | 1
experimental evidence used in manual assertion | sequence | 2
RNA detection assay evidence | gene_ex | 2
Inferred from Physical Interaction | misc | 2
Inferred from Sequence Model | PSI-MOD | 2
sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | PomGeneExProt | 2
protein expression level evidence based on western blot used in manual assertion | gene_ex | 2
curator inference used in manual assertion | sequence | 3
quantitative PCR | PomGeneExProt | 3
Inferred from Direct Assay | subunit_composition | 4
Inferred from Mutant Phenotype | misc | 4
in situ hybridization evidence used in manual assertion | PomGeneExRNA | 5
Traceable Author Statement | pombase_family_or_domain | 5
northern assay evidence used in manual assertion | PomGeneExProt | 5
Inferred from Sequence or Structural Similarity | pombase_family_or_domain | 6
immunofluorescence evidence | PomGeneExProt | 6
direct assay evidence used in manual assertion | sequence | 7
Inferred from Expression Pattern | biological_process | 7
Other direct assay | fission_yeast_phenotype | 8
Inferred from Experiment | sequence | 8
quantitative polymerase chain reaction evidence used in manual assertion | PomGeneExRNA | 8
microscopy evidence | gene_ex | 9
mutant phenotype evidence used in manual assertion | sequence | 10
fusion protein localization evidence | PomGeneExProt | 11
Inferred from Sequence or Structural Similarity | genome_org | 11
reporter gene assay evidence | PomGeneExRNA | 12
western blot evidence used in manual assertion | PomGeneExRNA | 13
in situ hybridization assay evidence | gene_ex | 14
microscopy evidence | PomGeneExProt | 15
transcript expression level evidence | PomGeneExRNA | 16
Inferred from high throughput direct assay | molecular_function | 17
curator inference used in manual assertion | PSI-MOD | 22
sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | fission_yeast_phenotype | 22
Immunolocalization experiment data | fission_yeast_phenotype | 23
sequence similarity evidence | sequence | 25
Particle size and count assay | fission_yeast_phenotype | 39
Inferred from Sequence or Structural Similarity | m_f_g | 41
Inferred from Genetic Interaction | cellular_component | 45
Unknown | PSI-MOD | 45
neural network method evidence used in manual assertion | PSI-MOD | 47
Epitope-tagged protein immunolocalization experiment data | fission_yeast_phenotype | 55
Inferred from Sequence Model | cellular_component | 57
RNA protection assay evidence | PomGeneExRNA | 58
Inferred from Physical Interaction | biological_process | 58
Inferred from Mutant Phenotype | cellular_component | 59
reverse transcription polymerase chain reaction transcription evidence | PomGeneExRNA | 60
Inferred from Sequence or Structural Similarity | warning | 65
Chromatography evidence | fission_yeast_phenotype | 82
Plasmid maintenance assay evidence | fission_yeast_phenotype | 85
Western blot evidence | PomGeneExProt | 86
Non-traceable Author Statement | cellular_component | 87
Traceable Author Statement | cellular_component | 99
Inferred from Sequence or Structural Similarity | PSI-MOD | 100
Non-traceable Author Statement | molecular_function | 109
Northern assay evidence | fission_yeast_phenotype | 117
Northern assay evidence | PomGeneExRNA | 124
Inferred from Sequence Model | biological_process | 124
Inferred from Genetic Interaction | molecular_function | 127
reporter gene assay evidence | PomGeneExProt | 136
quantitative PCR | PomGeneExRNA | 141
Traceable Author Statement | molecular_function | 143
Traceable Author Statement | biological_process | 143
western blot evidence used in manual assertion | fission_yeast_phenotype | 147
tryptic phosphopeptide mapping assay evidence used in automatic assertion | fission_yeast_phenotype | 149
Inferred from Electronic Annotation | cellular_component | 185
experimental evidence | PomGeneExRNA | 198
Inferred by Curator | molecular_function | 200
high throughput nucleotide sequencing assay evidence | fission_yeast_phenotype | 206
match to sequence model evidence used in manual assertion | sequence | 224
Inferred from Sequence or Structural Similarity | cellular_component | 234
Electrophoretic mobility shift assay data | fission_yeast_phenotype | 254
sequence similarity evidence used in manual assertion | PSI-MOD | 283
Inferred from Sequence or Structural Similarity | molecular_function | 286
Inferred from Physical Interaction | cellular_component | 289
Non-traceable Author Statement | biological_process | 290
Inferred from Electronic Annotation | biological_process | 299
Inferred from Sequence or Structural Similarity | biological_process | 370
sequence similarity evidence used in manual assertion | sequence | 372
western blot evidence used in manual assertion | PomGeneExProt | 437
experimental phenotypic evidence | fission_yeast_phenotype | 493
Inferred from Experiment | cellular_component | 511
Inferred from Genetic Interaction | biological_process | 528
Inferred by Curator | cellular_component | 544
mass spectrometry evidence | PomGeneExProt | 614
Inferred from Direct Assay | biological_process | 658
microscopy evidence used in manual assertion | fission_yeast_phenotype | 659
Inferred from Sequence Orthology | molecular_function | 681
ribosome profiling evidence | PomGeneExRD | 731
Inferred from Experiment | biological_process | 750
northern assay evidence used in manual assertion | PomGeneExRNA | 796
Inferred from Sequence Orthology | cellular_component | 798
Inferred by Curator | biological_process | 884
match to sequence model evidence | sequence | 939
Inferred from Sequence Model | molecular_function | 944
Inferred from Mutant Phenotype | molecular_function | 1059
Inferred from Experiment | molecular_function | 1084
competitive growth assay evidence | fission_yeast_phenotype | 1195
Co-immunoprecipitation experiment | fission_yeast_phenotype | 1233
Substance quantification | fission_yeast_phenotype | 1237
quantitative PCR | fission_yeast_phenotype | 1239
differential hybridization evidence | PSI-MOD | 1287
Inferred from Sequence Orthology | biological_process | 1311
match to sequence model evidence used in manual assertion | PSI-MOD | 1324
Inferred from Electronic Annotation | molecular_function | 1404
Inferred from high throughput mutant phenotype | molecular_function | 1535
Inferred from Biological aspect of Ancestor | cellular_component | 1907
Inferred from Direct Assay | molecular_function | 2115
cell viability assay evidence | fission_yeast_phenotype | 2163
Flow cytometry data | fission_yeast_phenotype | 2197
experimental evidence used in manual assertion | PSI-MOD | 2352
Inferred from Biological aspect of Ancestor | molecular_function | 2359
Inferred from Physical Interaction | molecular_function | 2393
Inferred from Biological aspect of Ancestor | biological_process | 2400
Other | fission_yeast_phenotype | 2475
Enzyme assay data | fission_yeast_phenotype | 2501
Chromatin immunoprecipitation experiment | fission_yeast_phenotype | 2565
gel electrophoresis evidence | fission_yeast_phenotype | 2606
Inferred from Direct Assay | PSI-MOD | 3282
reporter gene assay evidence | fission_yeast_phenotype | 3560
expression microarray evidence | PomGeneExRNA | 3588
Inferred from Mutant Phenotype | biological_process | 3709
RNA-sequencing evidence | PomGeneExRNA | 3987
Western blot assay | fission_yeast_phenotype | 4888
transcript expression level evidence | fission_yeast_phenotype | 5063
Inferred from Direct Assay | cellular_component | 6115
Inferred from high throughput direct assay | cellular_component | 6664
experimental evidence | PSI-MOD | 8138
mass spectrometry evidence | PSI-MOD | 8352
mass spectrometry evidence | gene_ex | 13682
experimental evidence | gene_ex | 19958
microscopy evidence | fission_yeast_phenotype | 39649
tryptic phosphopeptide mapping assay evidence used in automatic assertion | PSI-MOD | 44344
cell growth assay evidence | fission_yeast_phenotype | 116507
(144 rows)
annotation counts by evidence code and cv type, sorted by cv evidence code:
ev_code | cv_name | count
----------------------------------------------------------------------------------+--------------------------+--------
Chromatin immunoprecipitation experiment | fission_yeast_phenotype | 2565
Chromatography evidence | fission_yeast_phenotype | 82
Co-immunoprecipitation experiment | fission_yeast_phenotype | 1233
Electrophoretic mobility shift assay data | fission_yeast_phenotype | 254
Enzyme assay data | fission_yeast_phenotype | 2501
Epitope-tagged protein immunolocalization experiment data | fission_yeast_phenotype | 55
Flow cytometry data | fission_yeast_phenotype | 2197
Immunolocalization experiment data | fission_yeast_phenotype | 23
Inferred by Curator | biological_process | 884
Inferred by Curator | cellular_component | 544
Inferred by Curator | molecular_function | 200
Inferred from Biological aspect of Ancestor | biological_process | 2400
Inferred from Biological aspect of Ancestor | cellular_component | 1907
Inferred from Biological aspect of Ancestor | molecular_function | 2359
Inferred from Direct Assay | PSI-MOD | 3282
Inferred from Direct Assay | biological_process | 658
Inferred from Direct Assay | cellular_component | 6115
Inferred from Direct Assay | misc | 1
Inferred from Direct Assay | molecular_function | 2115
Inferred from Direct Assay | subunit_composition | 4
Inferred from Electronic Annotation | biological_process | 299
Inferred from Electronic Annotation | cellular_component | 185
Inferred from Electronic Annotation | molecular_function | 1404
Inferred from Experiment | biological_process | 750
Inferred from Experiment | cellular_component | 511
Inferred from Experiment | molecular_function | 1084
Inferred from Experiment | sequence | 8
Inferred from Expression Pattern | biological_process | 7
Inferred from Genetic Interaction | biological_process | 528
Inferred from Genetic Interaction | cellular_component | 45
Inferred from Genetic Interaction | molecular_function | 127
Inferred from Key Residues | molecular_function | 1
Inferred from Mutant Phenotype | PSI-MOD | 1
Inferred from Mutant Phenotype | biological_process | 3709
Inferred from Mutant Phenotype | cellular_component | 59
Inferred from Mutant Phenotype | misc | 4
Inferred from Mutant Phenotype | molecular_function | 1059
Inferred from Physical Interaction | biological_process | 58
Inferred from Physical Interaction | cellular_component | 289
Inferred from Physical Interaction | misc | 2
Inferred from Physical Interaction | molecular_function | 2393
Inferred from Sequence Model | PSI-MOD | 2
Inferred from Sequence Model | biological_process | 124
Inferred from Sequence Model | cellular_component | 57
Inferred from Sequence Model | molecular_function | 944
Inferred from Sequence Orthology | biological_process | 1311
Inferred from Sequence Orthology | cellular_component | 798
Inferred from Sequence Orthology | molecular_function | 681
Inferred from Sequence or Structural Similarity | PSI-MOD | 100
Inferred from Sequence or Structural Similarity | biological_process | 370
Inferred from Sequence or Structural Similarity | cellular_component | 234
Inferred from Sequence or Structural Similarity | genome_org | 11
Inferred from Sequence or Structural Similarity | m_f_g | 41
Inferred from Sequence or Structural Similarity | misc | 1
Inferred from Sequence or Structural Similarity | molecular_function | 286
Inferred from Sequence or Structural Similarity | pombase_family_or_domain | 6
Inferred from Sequence or Structural Similarity | subunit_composition | 1
Inferred from Sequence or Structural Similarity | warning | 65
Inferred from high throughput direct assay | cellular_component | 6664
Inferred from high throughput direct assay | molecular_function | 17
Inferred from high throughput mutant phenotype | molecular_function | 1535
Non-traceable Author Statement | biological_process | 290
Non-traceable Author Statement | cellular_component | 87
Non-traceable Author Statement | complementation | 1
Non-traceable Author Statement | molecular_function | 109
Northern assay evidence | PomGeneExRNA | 124
Northern assay evidence | fission_yeast_phenotype | 117
Other | fission_yeast_phenotype | 2475
Other direct assay | fission_yeast_phenotype | 8
Particle size and count assay | fission_yeast_phenotype | 39
Plasmid maintenance assay evidence | fission_yeast_phenotype | 85
RNA detection assay evidence | gene_ex | 2
RNA protection assay evidence | PomGeneExRNA | 58
RNA-sequencing evidence | PomGeneExRNA | 3987
Substance quantification | fission_yeast_phenotype | 1237
Traceable Author Statement | PSI-MOD | 1
Traceable Author Statement | biological_process | 143
Traceable Author Statement | cellular_component | 99
Traceable Author Statement | molecular_function | 143
Traceable Author Statement | pombase_family_or_domain | 5
Unknown | PSI-MOD | 45
Western blot assay | fission_yeast_phenotype | 4888
Western blot evidence | PomGeneExProt | 86
author statement supported by traceable reference used in manual assertion | sequence | 1
author statement without traceable support used in manual assertion | PSI-MOD | 1
cell growth assay evidence | fission_yeast_phenotype | 116507
cell viability assay evidence | fission_yeast_phenotype | 2163
combinatorial computational and experimental evidence used in manual assertion | PSI-MOD | 1
competitive growth assay evidence | fission_yeast_phenotype | 1195
curator inference used in manual assertion | PSI-MOD | 22
curator inference used in manual assertion | sequence | 3
differential hybridization evidence | PSI-MOD | 1287
differential hybridization evidence | PomGeneExRNA | 1
direct assay evidence used in manual assertion | sequence | 7
experimental evidence | PSI-MOD | 8138
experimental evidence | PomGeneExProt | 1
experimental evidence | PomGeneExRNA | 198
experimental evidence | gene_ex | 19958
experimental evidence used in manual assertion | PSI-MOD | 2352
experimental evidence used in manual assertion | sequence | 2
experimental phenotypic evidence | fission_yeast_phenotype | 493
expression microarray evidence | PomGeneExRNA | 3588
fusion protein localization evidence | PomGeneExProt | 11
gel electrophoresis evidence | fission_yeast_phenotype | 2606
high throughput nucleotide sequencing assay evidence | fission_yeast_phenotype | 206
immunofluorescence evidence | PomGeneExProt | 6
in situ hybridization assay evidence | gene_ex | 14
in situ hybridization evidence used in manual assertion | PomGeneExRNA | 5
mass spectrometry evidence | PSI-MOD | 8352
mass spectrometry evidence | PomGeneExProt | 614
mass spectrometry evidence | gene_ex | 13682
match to sequence model evidence | sequence | 939
match to sequence model evidence used in manual assertion | PSI-MOD | 1324
match to sequence model evidence used in manual assertion | sequence | 224
microscopy evidence | PomGeneExProt | 15
microscopy evidence | fission_yeast_phenotype | 39649
microscopy evidence | gene_ex | 9
microscopy evidence used in manual assertion | fission_yeast_phenotype | 659
mutant phenotype evidence used in manual assertion | sequence | 10
neural network method evidence used in manual assertion | PSI-MOD | 47
northern assay evidence used in manual assertion | PomGeneExProt | 5
northern assay evidence used in manual assertion | PomGeneExRNA | 796
protein expression level evidence based on western blot used in manual assertion | gene_ex | 2
quantitative PCR | PomGeneExProt | 3
quantitative PCR | PomGeneExRNA | 141
quantitative PCR | fission_yeast_phenotype | 1239
quantitative polymerase chain reaction evidence used in manual assertion | PomGeneExRNA | 8
reporter gene assay evidence | PomGeneExProt | 136
reporter gene assay evidence | PomGeneExRNA | 12
reporter gene assay evidence | fission_yeast_phenotype | 3560
reverse transcription polymerase chain reaction transcription evidence | PomGeneExRNA | 60
ribosome profiling evidence | PomGeneExRD | 731
sequence similarity evidence | sequence | 25
sequence similarity evidence used in manual assertion | PSI-MOD | 283
sequence similarity evidence used in manual assertion | sequence | 372
sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | PomGeneExProt | 2
sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | fission_yeast_phenotype | 22
transcript expression level evidence | PomGeneExRNA | 16
transcript expression level evidence | fission_yeast_phenotype | 5063
tryptic phosphopeptide mapping assay evidence used in automatic assertion | PSI-MOD | 44344
tryptic phosphopeptide mapping assay evidence used in automatic assertion | fission_yeast_phenotype | 149
western blot evidence used in manual assertion | PomGeneExProt | 437
western blot evidence used in manual assertion | PomGeneExRNA | 13
western blot evidence used in manual assertion | fission_yeast_phenotype | 147
(144 rows)
total:
count
--------
459268
(1 row)
counts of annotation from Canto, by type:
count | cv_name
-------+------------------------------------
8 | sequence
80 | PomGeneExProt
458 | PomGeneExRNA
2368 | PSI-MOD
4765 | biological_process
5251 | molecular_function
6018 | cellular_component
42066 | PomBase annotation extension terms
77327 | fission_yeast_phenotype
(9 rows)
total
-------
96275
(1 row)