counts of all annotation by type: count | cv_name --------+-------------------------------------- 6 | external_link 22 | ex_tools 23 | pathway 27 | cat_act 76 | m_f_g 161 | genome_org 195 | subunit_composition 411 | EC numbers 445 | misc 459 | complementation 731 | PomGeneExRD 1006 | name_description 1326 | PomGeneExProt 1662 | sequence 1700 | warning 1862 | pombase_family_or_domain 3316 | mondo 5145 | PomBase gene characterisation status 9038 | PomGeneExRNA 11511 | biological_process 14448 | molecular_function 17614 | cellular_component 25225 | species_dist 33667 | gene_ex 68203 | PomBase gene products 69975 | PSI-MOD 194002 | fission_yeast_phenotype (27 rows) annotation counts by evidence code and cv type, sorted by cv name: ev_code | cv_name | count ----------------------------------------------------------------------------------+--------------------------+-------- Inferred from Direct Assay | PSI-MOD | 3286 Inferred from Mutant Phenotype | PSI-MOD | 1 Inferred from Sequence Model | PSI-MOD | 2 Inferred from Sequence or Structural Similarity | PSI-MOD | 100 Traceable Author Statement | PSI-MOD | 1 Unknown | PSI-MOD | 43 author statement without traceable support used in manual assertion | PSI-MOD | 1 combinatorial computational and experimental evidence used in manual assertion | PSI-MOD | 1 curator inference used in manual assertion | PSI-MOD | 21 differential hybridization evidence | PSI-MOD | 1287 experimental evidence | PSI-MOD | 8138 experimental evidence used in manual assertion | PSI-MOD | 75 high throughput evidence used in manual assertion | PSI-MOD | 1992 mass spectrometry evidence | PSI-MOD | 8352 match to sequence model evidence used in manual assertion | PSI-MOD | 1316 neural network method evidence used in manual assertion | PSI-MOD | 47 sequence similarity evidence used in manual assertion | PSI-MOD | 263 tryptic phosphopeptide mapping assay evidence used in automatic assertion | PSI-MOD | 45049 Western blot evidence | PomGeneExProt | 90 experimental evidence | PomGeneExProt | 1 fusion protein localization evidence | PomGeneExProt | 11 immunofluorescence evidence | PomGeneExProt | 6 mass spectrometry evidence | PomGeneExProt | 614 microscopy evidence | PomGeneExProt | 15 northern assay evidence used in manual assertion | PomGeneExProt | 5 quantitative PCR | PomGeneExProt | 3 reporter gene assay evidence | PomGeneExProt | 136 sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | PomGeneExProt | 2 western blot evidence used in manual assertion | PomGeneExProt | 437 ribosome profiling evidence | PomGeneExRD | 731 Northern assay evidence | PomGeneExRNA | 124 RNA protection assay evidence | PomGeneExRNA | 58 RNA-sequencing evidence | PomGeneExRNA | 3987 differential hybridization evidence | PomGeneExRNA | 1 experimental evidence | PomGeneExRNA | 198 expression microarray evidence | PomGeneExRNA | 3593 in situ hybridization evidence used in manual assertion | PomGeneExRNA | 5 northern assay evidence used in manual assertion | PomGeneExRNA | 796 quantitative PCR | PomGeneExRNA | 150 quantitative polymerase chain reaction evidence used in manual assertion | PomGeneExRNA | 8 reporter gene assay evidence | PomGeneExRNA | 12 reverse transcription polymerase chain reaction transcription evidence | PomGeneExRNA | 60 transcript expression level evidence | PomGeneExRNA | 16 western blot evidence used in manual assertion | PomGeneExRNA | 13 Inferred by Curator | biological_process | 887 Inferred from Biological aspect of Ancestor | biological_process | 2385 Inferred from Direct Assay | biological_process | 657 Inferred from Electronic Annotation | biological_process | 295 Inferred from Experiment | biological_process | 757 Inferred from Expression Pattern | biological_process | 7 Inferred from Genetic Interaction | biological_process | 527 Inferred from Mutant Phenotype | biological_process | 3718 Inferred from Physical Interaction | biological_process | 57 Inferred from Sequence Model | biological_process | 117 Inferred from Sequence Orthology | biological_process | 1303 Inferred from Sequence or Structural Similarity | biological_process | 368 Non-traceable Author Statement | biological_process | 287 Traceable Author Statement | biological_process | 146 Inferred by Curator | cellular_component | 544 Inferred from Biological aspect of Ancestor | cellular_component | 1881 Inferred from Direct Assay | cellular_component | 6141 Inferred from Electronic Annotation | cellular_component | 206 Inferred from Experiment | cellular_component | 514 Inferred from Genetic Interaction | cellular_component | 45 Inferred from Mutant Phenotype | cellular_component | 59 Inferred from Physical Interaction | cellular_component | 289 Inferred from Sequence Model | cellular_component | 57 Inferred from Sequence Orthology | cellular_component | 804 Inferred from Sequence or Structural Similarity | cellular_component | 233 Inferred from high throughput direct assay | cellular_component | 6654 Non-traceable Author Statement | cellular_component | 87 Traceable Author Statement | cellular_component | 100 Non-traceable Author Statement | complementation | 1 Chromatin immunoprecipitation experiment | fission_yeast_phenotype | 2605 Chromatography evidence | fission_yeast_phenotype | 82 Co-immunoprecipitation experiment | fission_yeast_phenotype | 1254 ECO_0007005 | fission_yeast_phenotype | 1964 Electrophoretic mobility shift assay data | fission_yeast_phenotype | 256 Enzyme assay data | fission_yeast_phenotype | 2507 Epitope-tagged protein immunolocalization experiment data | fission_yeast_phenotype | 55 Flow cytometry data | fission_yeast_phenotype | 2201 Immunolocalization experiment data | fission_yeast_phenotype | 33 Northern assay evidence | fission_yeast_phenotype | 117 Other | fission_yeast_phenotype | 2581 Other direct assay | fission_yeast_phenotype | 8 Particle size and count assay | fission_yeast_phenotype | 43 Plasmid maintenance assay evidence | fission_yeast_phenotype | 85 Substance quantification evidence | fission_yeast_phenotype | 1243 Western blot assay | fission_yeast_phenotype | 4954 cell growth assay evidence | fission_yeast_phenotype | 116555 cell viability assay evidence | fission_yeast_phenotype | 2163 competitive growth assay evidence | fission_yeast_phenotype | 1195 experimental phenotypic evidence | fission_yeast_phenotype | 493 gel electrophoresis evidence | fission_yeast_phenotype | 2618 high throughput nucleotide sequencing assay evidence | fission_yeast_phenotype | 206 microscopy evidence | fission_yeast_phenotype | 39830 microscopy evidence used in manual assertion | fission_yeast_phenotype | 659 quantitative PCR | fission_yeast_phenotype | 1295 reporter gene assay evidence | fission_yeast_phenotype | 3569 sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | fission_yeast_phenotype | 22 transcript expression level evidence | fission_yeast_phenotype | 5113 tryptic phosphopeptide mapping assay evidence used in automatic assertion | fission_yeast_phenotype | 149 western blot evidence used in manual assertion | fission_yeast_phenotype | 147 RNA detection assay evidence | gene_ex | 2 experimental evidence | gene_ex | 19958 in situ hybridization assay evidence | gene_ex | 14 mass spectrometry evidence | gene_ex | 13682 microscopy evidence | gene_ex | 9 protein expression level evidence based on western blot used in manual assertion | gene_ex | 2 Inferred from Sequence or Structural Similarity | genome_org | 11 Inferred from Sequence or Structural Similarity | m_f_g | 41 Inferred from Direct Assay | misc | 1 Inferred from Mutant Phenotype | misc | 4 Inferred from Physical Interaction | misc | 2 Inferred from Sequence or Structural Similarity | misc | 1 Inferred by Curator | molecular_function | 199 Inferred from Biological aspect of Ancestor | molecular_function | 2369 Inferred from Direct Assay | molecular_function | 2123 Inferred from Electronic Annotation | molecular_function | 1378 Inferred from Experiment | molecular_function | 1112 Inferred from Genetic Interaction | molecular_function | 127 Inferred from Key Residues | molecular_function | 1 Inferred from Mutant Phenotype | molecular_function | 1057 Inferred from Physical Interaction | molecular_function | 2366 Inferred from Sequence Model | molecular_function | 942 Inferred from Sequence Orthology | molecular_function | 681 Inferred from Sequence or Structural Similarity | molecular_function | 289 Inferred from high throughput direct assay | molecular_function | 17 Inferred from high throughput mutant phenotype | molecular_function | 1535 Non-traceable Author Statement | molecular_function | 109 Traceable Author Statement | molecular_function | 143 Inferred from Sequence or Structural Similarity | pombase_family_or_domain | 6 Traceable Author Statement | pombase_family_or_domain | 5 ECO:0000015 | sequence | 1 Inferred from Experiment | sequence | 9 author statement supported by traceable reference used in manual assertion | sequence | 1 curator inference used in manual assertion | sequence | 6 direct assay evidence used in manual assertion | sequence | 7 experimental evidence used in manual assertion | sequence | 4 match to sequence model evidence | sequence | 941 match to sequence model evidence used in manual assertion | sequence | 425 mutant phenotype evidence used in manual assertion | sequence | 10 sequence similarity evidence | sequence | 25 sequence similarity evidence used in manual assertion | sequence | 155 Inferred from Direct Assay | subunit_composition | 4 Inferred from Sequence or Structural Similarity | subunit_composition | 1 Inferred from Sequence or Structural Similarity | warning | 65 (147 rows) annotation counts by evidence code and cv type, sorted by count: ev_code | cv_name | count ----------------------------------------------------------------------------------+--------------------------+-------- Non-traceable Author Statement | complementation | 1 Inferred from Sequence or Structural Similarity | misc | 1 author statement supported by traceable reference used in manual assertion | sequence | 1 Inferred from Direct Assay | misc | 1 Inferred from Sequence or Structural Similarity | subunit_composition | 1 Inferred from Mutant Phenotype | PSI-MOD | 1 Inferred from Key Residues | molecular_function | 1 combinatorial computational and experimental evidence used in manual assertion | PSI-MOD | 1 author statement without traceable support used in manual assertion | PSI-MOD | 1 Traceable Author Statement | PSI-MOD | 1 ECO:0000015 | sequence | 1 experimental evidence | PomGeneExProt | 1 differential hybridization evidence | PomGeneExRNA | 1 Inferred from Physical Interaction | misc | 2 protein expression level evidence based on western blot used in manual assertion | gene_ex | 2 Inferred from Sequence Model | PSI-MOD | 2 RNA detection assay evidence | gene_ex | 2 sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | PomGeneExProt | 2 quantitative PCR | PomGeneExProt | 3 experimental evidence used in manual assertion | sequence | 4 Inferred from Mutant Phenotype | misc | 4 Inferred from Direct Assay | subunit_composition | 4 Traceable Author Statement | pombase_family_or_domain | 5 northern assay evidence used in manual assertion | PomGeneExProt | 5 in situ hybridization evidence used in manual assertion | PomGeneExRNA | 5 Inferred from Sequence or Structural Similarity | pombase_family_or_domain | 6 immunofluorescence evidence | PomGeneExProt | 6 curator inference used in manual assertion | sequence | 6 Inferred from Expression Pattern | biological_process | 7 direct assay evidence used in manual assertion | sequence | 7 Other direct assay | fission_yeast_phenotype | 8 quantitative polymerase chain reaction evidence used in manual assertion | PomGeneExRNA | 8 microscopy evidence | gene_ex | 9 Inferred from Experiment | sequence | 9 mutant phenotype evidence used in manual assertion | sequence | 10 Inferred from Sequence or Structural Similarity | genome_org | 11 fusion protein localization evidence | PomGeneExProt | 11 reporter gene assay evidence | PomGeneExRNA | 12 western blot evidence used in manual assertion | PomGeneExRNA | 13 in situ hybridization assay evidence | gene_ex | 14 microscopy evidence | PomGeneExProt | 15 transcript expression level evidence | PomGeneExRNA | 16 Inferred from high throughput direct assay | molecular_function | 17 curator inference used in manual assertion | PSI-MOD | 21 sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | fission_yeast_phenotype | 22 sequence similarity evidence | sequence | 25 Immunolocalization experiment data | fission_yeast_phenotype | 33 Inferred from Sequence or Structural Similarity | m_f_g | 41 Particle size and count assay | fission_yeast_phenotype | 43 Unknown | PSI-MOD | 43 Inferred from Genetic Interaction | cellular_component | 45 neural network method evidence used in manual assertion | PSI-MOD | 47 Epitope-tagged protein immunolocalization experiment data | fission_yeast_phenotype | 55 Inferred from Sequence Model | cellular_component | 57 Inferred from Physical Interaction | biological_process | 57 RNA protection assay evidence | PomGeneExRNA | 58 Inferred from Mutant Phenotype | cellular_component | 59 reverse transcription polymerase chain reaction transcription evidence | PomGeneExRNA | 60 Inferred from Sequence or Structural Similarity | warning | 65 experimental evidence used in manual assertion | PSI-MOD | 75 Chromatography evidence | fission_yeast_phenotype | 82 Plasmid maintenance assay evidence | fission_yeast_phenotype | 85 Non-traceable Author Statement | cellular_component | 87 Western blot evidence | PomGeneExProt | 90 Inferred from Sequence or Structural Similarity | PSI-MOD | 100 Traceable Author Statement | cellular_component | 100 Non-traceable Author Statement | molecular_function | 109 Inferred from Sequence Model | biological_process | 117 Northern assay evidence | fission_yeast_phenotype | 117 Northern assay evidence | PomGeneExRNA | 124 Inferred from Genetic Interaction | molecular_function | 127 reporter gene assay evidence | PomGeneExProt | 136 Traceable Author Statement | molecular_function | 143 Traceable Author Statement | biological_process | 146 western blot evidence used in manual assertion | fission_yeast_phenotype | 147 tryptic phosphopeptide mapping assay evidence used in automatic assertion | fission_yeast_phenotype | 149 quantitative PCR | PomGeneExRNA | 150 sequence similarity evidence used in manual assertion | sequence | 155 experimental evidence | PomGeneExRNA | 198 Inferred by Curator | molecular_function | 199 Inferred from Electronic Annotation | cellular_component | 206 high throughput nucleotide sequencing assay evidence | fission_yeast_phenotype | 206 Inferred from Sequence or Structural Similarity | cellular_component | 233 Electrophoretic mobility shift assay data | fission_yeast_phenotype | 256 sequence similarity evidence used in manual assertion | PSI-MOD | 263 Non-traceable Author Statement | biological_process | 287 Inferred from Sequence or Structural Similarity | molecular_function | 289 Inferred from Physical Interaction | cellular_component | 289 Inferred from Electronic Annotation | biological_process | 295 Inferred from Sequence or Structural Similarity | biological_process | 368 match to sequence model evidence used in manual assertion | sequence | 425 western blot evidence used in manual assertion | PomGeneExProt | 437 experimental phenotypic evidence | fission_yeast_phenotype | 493 Inferred from Experiment | cellular_component | 514 Inferred from Genetic Interaction | biological_process | 527 Inferred by Curator | cellular_component | 544 mass spectrometry evidence | PomGeneExProt | 614 Inferred from Direct Assay | biological_process | 657 microscopy evidence used in manual assertion | fission_yeast_phenotype | 659 Inferred from Sequence Orthology | molecular_function | 681 ribosome profiling evidence | PomGeneExRD | 731 Inferred from Experiment | biological_process | 757 northern assay evidence used in manual assertion | PomGeneExRNA | 796 Inferred from Sequence Orthology | cellular_component | 804 Inferred by Curator | biological_process | 887 match to sequence model evidence | sequence | 941 Inferred from Sequence Model | molecular_function | 942 Inferred from Mutant Phenotype | molecular_function | 1057 Inferred from Experiment | molecular_function | 1112 competitive growth assay evidence | fission_yeast_phenotype | 1195 Substance quantification evidence | fission_yeast_phenotype | 1243 Co-immunoprecipitation experiment | fission_yeast_phenotype | 1254 differential hybridization evidence | PSI-MOD | 1287 quantitative PCR | fission_yeast_phenotype | 1295 Inferred from Sequence Orthology | biological_process | 1303 match to sequence model evidence used in manual assertion | PSI-MOD | 1316 Inferred from Electronic Annotation | molecular_function | 1378 Inferred from high throughput mutant phenotype | molecular_function | 1535 Inferred from Biological aspect of Ancestor | cellular_component | 1881 ECO_0007005 | fission_yeast_phenotype | 1964 high throughput evidence used in manual assertion | PSI-MOD | 1992 Inferred from Direct Assay | molecular_function | 2123 cell viability assay evidence | fission_yeast_phenotype | 2163 Flow cytometry data | fission_yeast_phenotype | 2201 Inferred from Physical Interaction | molecular_function | 2366 Inferred from Biological aspect of Ancestor | molecular_function | 2369 Inferred from Biological aspect of Ancestor | biological_process | 2385 Enzyme assay data | fission_yeast_phenotype | 2507 Other | fission_yeast_phenotype | 2581 Chromatin immunoprecipitation experiment | fission_yeast_phenotype | 2605 gel electrophoresis evidence | fission_yeast_phenotype | 2618 Inferred from Direct Assay | PSI-MOD | 3286 reporter gene assay evidence | fission_yeast_phenotype | 3569 expression microarray evidence | PomGeneExRNA | 3593 Inferred from Mutant Phenotype | biological_process | 3718 RNA-sequencing evidence | PomGeneExRNA | 3987 Western blot assay | fission_yeast_phenotype | 4954 transcript expression level evidence | fission_yeast_phenotype | 5113 Inferred from Direct Assay | cellular_component | 6141 Inferred from high throughput direct assay | cellular_component | 6654 experimental evidence | PSI-MOD | 8138 mass spectrometry evidence | PSI-MOD | 8352 mass spectrometry evidence | gene_ex | 13682 experimental evidence | gene_ex | 19958 microscopy evidence | fission_yeast_phenotype | 39830 tryptic phosphopeptide mapping assay evidence used in automatic assertion | PSI-MOD | 45049 cell growth assay evidence | fission_yeast_phenotype | 116555 (147 rows) annotation counts by evidence code and cv type, sorted by cv evidence code: ev_code | cv_name | count ----------------------------------------------------------------------------------+--------------------------+-------- Chromatin immunoprecipitation experiment | fission_yeast_phenotype | 2605 Chromatography evidence | fission_yeast_phenotype | 82 Co-immunoprecipitation experiment | fission_yeast_phenotype | 1254 ECO:0000015 | sequence | 1 ECO_0007005 | fission_yeast_phenotype | 1964 Electrophoretic mobility shift assay data | fission_yeast_phenotype | 256 Enzyme assay data | fission_yeast_phenotype | 2507 Epitope-tagged protein immunolocalization experiment data | fission_yeast_phenotype | 55 Flow cytometry data | fission_yeast_phenotype | 2201 Immunolocalization experiment data | fission_yeast_phenotype | 33 Inferred by Curator | biological_process | 887 Inferred by Curator | cellular_component | 544 Inferred by Curator | molecular_function | 199 Inferred from Biological aspect of Ancestor | biological_process | 2385 Inferred from Biological aspect of Ancestor | cellular_component | 1881 Inferred from Biological aspect of Ancestor | molecular_function | 2369 Inferred from Direct Assay | PSI-MOD | 3286 Inferred from Direct Assay | biological_process | 657 Inferred from Direct Assay | cellular_component | 6141 Inferred from Direct Assay | misc | 1 Inferred from Direct Assay | molecular_function | 2123 Inferred from Direct Assay | subunit_composition | 4 Inferred from Electronic Annotation | biological_process | 295 Inferred from Electronic Annotation | cellular_component | 206 Inferred from Electronic Annotation | molecular_function | 1378 Inferred from Experiment | biological_process | 757 Inferred from Experiment | cellular_component | 514 Inferred from Experiment | molecular_function | 1112 Inferred from Experiment | sequence | 9 Inferred from Expression Pattern | biological_process | 7 Inferred from Genetic Interaction | biological_process | 527 Inferred from Genetic Interaction | cellular_component | 45 Inferred from Genetic Interaction | molecular_function | 127 Inferred from Key Residues | molecular_function | 1 Inferred from Mutant Phenotype | PSI-MOD | 1 Inferred from Mutant Phenotype | biological_process | 3718 Inferred from Mutant Phenotype | cellular_component | 59 Inferred from Mutant Phenotype | misc | 4 Inferred from Mutant Phenotype | molecular_function | 1057 Inferred from Physical Interaction | biological_process | 57 Inferred from Physical Interaction | cellular_component | 289 Inferred from Physical Interaction | misc | 2 Inferred from Physical Interaction | molecular_function | 2366 Inferred from Sequence Model | PSI-MOD | 2 Inferred from Sequence Model | biological_process | 117 Inferred from Sequence Model | cellular_component | 57 Inferred from Sequence Model | molecular_function | 942 Inferred from Sequence Orthology | biological_process | 1303 Inferred from Sequence Orthology | cellular_component | 804 Inferred from Sequence Orthology | molecular_function | 681 Inferred from Sequence or Structural Similarity | PSI-MOD | 100 Inferred from Sequence or Structural Similarity | biological_process | 368 Inferred from Sequence or Structural Similarity | cellular_component | 233 Inferred from Sequence or Structural Similarity | genome_org | 11 Inferred from Sequence or Structural Similarity | m_f_g | 41 Inferred from Sequence or Structural Similarity | misc | 1 Inferred from Sequence or Structural Similarity | molecular_function | 289 Inferred from Sequence or Structural Similarity | pombase_family_or_domain | 6 Inferred from Sequence or Structural Similarity | subunit_composition | 1 Inferred from Sequence or Structural Similarity | warning | 65 Inferred from high throughput direct assay | cellular_component | 6654 Inferred from high throughput direct assay | molecular_function | 17 Inferred from high throughput mutant phenotype | molecular_function | 1535 Non-traceable Author Statement | biological_process | 287 Non-traceable Author Statement | cellular_component | 87 Non-traceable Author Statement | complementation | 1 Non-traceable Author Statement | molecular_function | 109 Northern assay evidence | PomGeneExRNA | 124 Northern assay evidence | fission_yeast_phenotype | 117 Other | fission_yeast_phenotype | 2581 Other direct assay | fission_yeast_phenotype | 8 Particle size and count assay | fission_yeast_phenotype | 43 Plasmid maintenance assay evidence | fission_yeast_phenotype | 85 RNA detection assay evidence | gene_ex | 2 RNA protection assay evidence | PomGeneExRNA | 58 RNA-sequencing evidence | PomGeneExRNA | 3987 Substance quantification evidence | fission_yeast_phenotype | 1243 Traceable Author Statement | PSI-MOD | 1 Traceable Author Statement | biological_process | 146 Traceable Author Statement | cellular_component | 100 Traceable Author Statement | molecular_function | 143 Traceable Author Statement | pombase_family_or_domain | 5 Unknown | PSI-MOD | 43 Western blot assay | fission_yeast_phenotype | 4954 Western blot evidence | PomGeneExProt | 90 author statement supported by traceable reference used in manual assertion | sequence | 1 author statement without traceable support used in manual assertion | PSI-MOD | 1 cell growth assay evidence | fission_yeast_phenotype | 116555 cell viability assay evidence | fission_yeast_phenotype | 2163 combinatorial computational and experimental evidence used in manual assertion | PSI-MOD | 1 competitive growth assay evidence | fission_yeast_phenotype | 1195 curator inference used in manual assertion | PSI-MOD | 21 curator inference used in manual assertion | sequence | 6 differential hybridization evidence | PSI-MOD | 1287 differential hybridization evidence | PomGeneExRNA | 1 direct assay evidence used in manual assertion | sequence | 7 experimental evidence | PSI-MOD | 8138 experimental evidence | PomGeneExProt | 1 experimental evidence | PomGeneExRNA | 198 experimental evidence | gene_ex | 19958 experimental evidence used in manual assertion | PSI-MOD | 75 experimental evidence used in manual assertion | sequence | 4 experimental phenotypic evidence | fission_yeast_phenotype | 493 expression microarray evidence | PomGeneExRNA | 3593 fusion protein localization evidence | PomGeneExProt | 11 gel electrophoresis evidence | fission_yeast_phenotype | 2618 high throughput evidence used in manual assertion | PSI-MOD | 1992 high throughput nucleotide sequencing assay evidence | fission_yeast_phenotype | 206 immunofluorescence evidence | PomGeneExProt | 6 in situ hybridization assay evidence | gene_ex | 14 in situ hybridization evidence used in manual assertion | PomGeneExRNA | 5 mass spectrometry evidence | PSI-MOD | 8352 mass spectrometry evidence | PomGeneExProt | 614 mass spectrometry evidence | gene_ex | 13682 match to sequence model evidence | sequence | 941 match to sequence model evidence used in manual assertion | PSI-MOD | 1316 match to sequence model evidence used in manual assertion | sequence | 425 microscopy evidence | PomGeneExProt | 15 microscopy evidence | fission_yeast_phenotype | 39830 microscopy evidence | gene_ex | 9 microscopy evidence used in manual assertion | fission_yeast_phenotype | 659 mutant phenotype evidence used in manual assertion | sequence | 10 neural network method evidence used in manual assertion | PSI-MOD | 47 northern assay evidence used in manual assertion | PomGeneExProt | 5 northern assay evidence used in manual assertion | PomGeneExRNA | 796 protein expression level evidence based on western blot used in manual assertion | gene_ex | 2 quantitative PCR | PomGeneExProt | 3 quantitative PCR | PomGeneExRNA | 150 quantitative PCR | fission_yeast_phenotype | 1295 quantitative polymerase chain reaction evidence used in manual assertion | PomGeneExRNA | 8 reporter gene assay evidence | PomGeneExProt | 136 reporter gene assay evidence | PomGeneExRNA | 12 reporter gene assay evidence | fission_yeast_phenotype | 3569 reverse transcription polymerase chain reaction transcription evidence | PomGeneExRNA | 60 ribosome profiling evidence | PomGeneExRD | 731 sequence similarity evidence | sequence | 25 sequence similarity evidence used in manual assertion | PSI-MOD | 263 sequence similarity evidence used in manual assertion | sequence | 155 sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | PomGeneExProt | 2 sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | fission_yeast_phenotype | 22 transcript expression level evidence | PomGeneExRNA | 16 transcript expression level evidence | fission_yeast_phenotype | 5113 tryptic phosphopeptide mapping assay evidence used in automatic assertion | PSI-MOD | 45049 tryptic phosphopeptide mapping assay evidence used in automatic assertion | fission_yeast_phenotype | 149 western blot evidence used in manual assertion | PomGeneExProt | 437 western blot evidence used in manual assertion | PomGeneExRNA | 13 western blot evidence used in manual assertion | fission_yeast_phenotype | 147 (147 rows) total: count -------- 462256 (1 row) counts of annotation from Canto, by type: count | cv_name -------+------------------------------------ 9 | sequence 84 | PomGeneExProt 472 | PomGeneExRNA 2373 | PSI-MOD 4786 | biological_process 5259 | molecular_function 6047 | cellular_component 42583 | PomBase annotation extension terms 77948 | fission_yeast_phenotype (9 rows) total ------- 96978 (1 row)