counts of all annotation by type:
count | cv_name
--------+--------------------------------------
6 | external_link
22 | ex_tools
23 | pathway
26 | cat_act
76 | m_f_g
161 | genome_org
195 | subunit_composition
408 | EC numbers
445 | misc
459 | complementation
731 | PomGeneExRD
1008 | name_description
1662 | sequence
1700 | warning
1864 | pombase_family_or_domain
3317 | mondo
3361 | PomGeneExProt
5145 | PomBase gene characterisation status
9036 | PomGeneExRNA
11526 | biological_process
14538 | molecular_function
17629 | cellular_component
25226 | species_dist
33667 | gene_ex
68203 | PomBase gene products
71215 | PSI-MOD
194458 | fission_yeast_phenotype
(27 rows)
annotation counts by evidence code and cv type, sorted by cv name:
ev_code | cv_name | count
----------------------------------------------------------------------------------+--------------------------+--------
Inferred from Direct Assay | PSI-MOD | 3292
Inferred from Mutant Phenotype | PSI-MOD | 1
Inferred from Sequence Model | PSI-MOD | 2
Inferred from Sequence or Structural Similarity | PSI-MOD | 100
Traceable Author Statement | PSI-MOD | 1
Unknown | PSI-MOD | 43
author statement without traceable support used in manual assertion | PSI-MOD | 1
combinatorial computational and experimental evidence used in manual assertion | PSI-MOD | 1
curator inference used in manual assertion | PSI-MOD | 21
differential hybridization evidence | PSI-MOD | 1287
experimental evidence | PSI-MOD | 8138
experimental evidence used in manual assertion | PSI-MOD | 75
high throughput evidence used in manual assertion | PSI-MOD | 3226
mass spectrometry evidence | PSI-MOD | 8352
match to sequence model evidence used in manual assertion | PSI-MOD | 1316
neural network method evidence used in manual assertion | PSI-MOD | 47
sequence similarity evidence used in manual assertion | PSI-MOD | 263
tryptic phosphopeptide mapping assay evidence used in automatic assertion | PSI-MOD | 45049
Western blot evidence | PomGeneExProt | 107
experimental evidence | PomGeneExProt | 1
fusion protein localization evidence | PomGeneExProt | 11
high throughput evidence used in manual assertion | PomGeneExProt | 2018
immunofluorescence evidence | PomGeneExProt | 6
mass spectrometry evidence | PomGeneExProt | 614
microscopy evidence | PomGeneExProt | 15
northern assay evidence used in manual assertion | PomGeneExProt | 5
quantitative PCR | PomGeneExProt | 3
reporter gene assay evidence | PomGeneExProt | 136
sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | PomGeneExProt | 2
western blot evidence used in manual assertion | PomGeneExProt | 437
ribosome profiling evidence | PomGeneExRD | 731
Northern assay evidence | PomGeneExRNA | 124
RNA protection assay evidence | PomGeneExRNA | 58
RNA-sequencing evidence | PomGeneExRNA | 3985
differential hybridization evidence | PomGeneExRNA | 1
experimental evidence | PomGeneExRNA | 198
expression microarray evidence | PomGeneExRNA | 3593
in situ hybridization evidence used in manual assertion | PomGeneExRNA | 5
northern assay evidence used in manual assertion | PomGeneExRNA | 796
quantitative PCR | PomGeneExRNA | 150
quantitative polymerase chain reaction evidence used in manual assertion | PomGeneExRNA | 8
reporter gene assay evidence | PomGeneExRNA | 12
reverse transcription polymerase chain reaction transcription evidence | PomGeneExRNA | 60
transcript expression level evidence | PomGeneExRNA | 16
western blot evidence used in manual assertion | PomGeneExRNA | 13
Inferred by Curator | biological_process | 889
Inferred from Biological aspect of Ancestor | biological_process | 2378
Inferred from Direct Assay | biological_process | 654
Inferred from Electronic Annotation | biological_process | 304
Inferred from Experiment | biological_process | 751
Inferred from Expression Pattern | biological_process | 7
Inferred from Genetic Interaction | biological_process | 530
Inferred from Mutant Phenotype | biological_process | 3737
Inferred from Physical Interaction | biological_process | 57
Inferred from Sequence Model | biological_process | 117
Inferred from Sequence Orthology | biological_process | 1305
Inferred from Sequence or Structural Similarity | biological_process | 367
Non-traceable Author Statement | biological_process | 283
Traceable Author Statement | biological_process | 147
Inferred by Curator | cellular_component | 544
Inferred from Biological aspect of Ancestor | cellular_component | 1877
Inferred from Direct Assay | cellular_component | 6165
Inferred from Electronic Annotation | cellular_component | 205
Inferred from Experiment | cellular_component | 514
Inferred from Genetic Interaction | cellular_component | 45
Inferred from Mutant Phenotype | cellular_component | 59
Inferred from Physical Interaction | cellular_component | 289
Inferred from Sequence Model | cellular_component | 57
Inferred from Sequence Orthology | cellular_component | 806
Inferred from Sequence or Structural Similarity | cellular_component | 232
Inferred from high throughput direct assay | cellular_component | 6652
Non-traceable Author Statement | cellular_component | 85
Traceable Author Statement | cellular_component | 99
Non-traceable Author Statement | complementation | 1
Chromatin immunoprecipitation experiment | fission_yeast_phenotype | 2605
Chromatography evidence | fission_yeast_phenotype | 82
Co-immunoprecipitation experiment | fission_yeast_phenotype | 1262
Electrophoretic mobility shift assay data | fission_yeast_phenotype | 256
Enzyme assay data | fission_yeast_phenotype | 2523
Epitope-tagged protein immunolocalization experiment data | fission_yeast_phenotype | 55
Flow cytometry data | fission_yeast_phenotype | 2202
Immunolocalization experiment data | fission_yeast_phenotype | 33
Northern assay evidence | fission_yeast_phenotype | 117
Other | fission_yeast_phenotype | 2636
Other direct assay | fission_yeast_phenotype | 8
Particle size and count assay | fission_yeast_phenotype | 44
Plasmid maintenance assay evidence | fission_yeast_phenotype | 82
Substance quantification | fission_yeast_phenotype | 1245
Western blot assay | fission_yeast_phenotype | 5017
cell growth assay evidence | fission_yeast_phenotype | 116789
cell viability assay evidence | fission_yeast_phenotype | 2163
competitive growth assay evidence | fission_yeast_phenotype | 1195
experimental phenotypic evidence | fission_yeast_phenotype | 493
gel electrophoresis evidence | fission_yeast_phenotype | 2622
high throughput evidence used in manual assertion | fission_yeast_phenotype | 1964
high throughput nucleotide sequencing assay evidence | fission_yeast_phenotype | 206
microscopy evidence | fission_yeast_phenotype | 39875
microscopy evidence used in manual assertion | fission_yeast_phenotype | 659
quantitative PCR | fission_yeast_phenotype | 1321
reporter gene assay evidence | fission_yeast_phenotype | 3577
sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | fission_yeast_phenotype | 22
transcript expression level evidence | fission_yeast_phenotype | 5109
tryptic phosphopeptide mapping assay evidence used in automatic assertion | fission_yeast_phenotype | 149
western blot evidence used in manual assertion | fission_yeast_phenotype | 147
RNA detection assay evidence | gene_ex | 2
experimental evidence | gene_ex | 19958
in situ hybridization assay evidence | gene_ex | 14
mass spectrometry evidence | gene_ex | 13682
microscopy evidence | gene_ex | 9
protein expression level evidence based on western blot used in manual assertion | gene_ex | 2
Inferred from Sequence or Structural Similarity | genome_org | 11
Inferred from Sequence or Structural Similarity | m_f_g | 41
Inferred from Direct Assay | misc | 1
Inferred from Mutant Phenotype | misc | 4
Inferred from Physical Interaction | misc | 2
Inferred from Sequence or Structural Similarity | misc | 1
Inferred by Curator | molecular_function | 199
Inferred from Biological aspect of Ancestor | molecular_function | 2350
Inferred from Direct Assay | molecular_function | 2126
Inferred from Electronic Annotation | molecular_function | 1463
Inferred from Experiment | molecular_function | 1120
Inferred from Genetic Interaction | molecular_function | 126
Inferred from Key Residues | molecular_function | 1
Inferred from Mutant Phenotype | molecular_function | 1069
Inferred from Physical Interaction | molecular_function | 2361
Inferred from Sequence Model | molecular_function | 942
Inferred from Sequence Orthology | molecular_function | 686
Inferred from Sequence or Structural Similarity | molecular_function | 289
Inferred from high throughput direct assay | molecular_function | 17
Inferred from high throughput mutant phenotype | molecular_function | 1535
Non-traceable Author Statement | molecular_function | 109
Traceable Author Statement | molecular_function | 145
Inferred from Sequence or Structural Similarity | pombase_family_or_domain | 6
Traceable Author Statement | pombase_family_or_domain | 5
ECO:0000015 | sequence | 1
Inferred from Experiment | sequence | 9
author statement supported by traceable reference used in manual assertion | sequence | 1
curator inference used in manual assertion | sequence | 6
direct assay evidence used in manual assertion | sequence | 7
experimental evidence used in manual assertion | sequence | 4
match to sequence model evidence | sequence | 941
match to sequence model evidence used in manual assertion | sequence | 425
mutant phenotype evidence used in manual assertion | sequence | 10
sequence similarity evidence | sequence | 25
sequence similarity evidence used in manual assertion | sequence | 155
Inferred from Direct Assay | subunit_composition | 4
Inferred from Sequence or Structural Similarity | subunit_composition | 1
Inferred from Sequence or Structural Similarity | warning | 65
(148 rows)
annotation counts by evidence code and cv type, sorted by count:
ev_code | cv_name | count
----------------------------------------------------------------------------------+--------------------------+--------
Inferred from Sequence or Structural Similarity | subunit_composition | 1
differential hybridization evidence | PomGeneExRNA | 1
Inferred from Key Residues | molecular_function | 1
Inferred from Sequence or Structural Similarity | misc | 1
author statement supported by traceable reference used in manual assertion | sequence | 1
Inferred from Direct Assay | misc | 1
experimental evidence | PomGeneExProt | 1
author statement without traceable support used in manual assertion | PSI-MOD | 1
Non-traceable Author Statement | complementation | 1
ECO:0000015 | sequence | 1
Traceable Author Statement | PSI-MOD | 1
Inferred from Mutant Phenotype | PSI-MOD | 1
combinatorial computational and experimental evidence used in manual assertion | PSI-MOD | 1
RNA detection assay evidence | gene_ex | 2
sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | PomGeneExProt | 2
Inferred from Sequence Model | PSI-MOD | 2
Inferred from Physical Interaction | misc | 2
protein expression level evidence based on western blot used in manual assertion | gene_ex | 2
quantitative PCR | PomGeneExProt | 3
experimental evidence used in manual assertion | sequence | 4
Inferred from Mutant Phenotype | misc | 4
Inferred from Direct Assay | subunit_composition | 4
northern assay evidence used in manual assertion | PomGeneExProt | 5
Traceable Author Statement | pombase_family_or_domain | 5
in situ hybridization evidence used in manual assertion | PomGeneExRNA | 5
immunofluorescence evidence | PomGeneExProt | 6
curator inference used in manual assertion | sequence | 6
Inferred from Sequence or Structural Similarity | pombase_family_or_domain | 6
direct assay evidence used in manual assertion | sequence | 7
Inferred from Expression Pattern | biological_process | 7
Other direct assay | fission_yeast_phenotype | 8
quantitative polymerase chain reaction evidence used in manual assertion | PomGeneExRNA | 8
Inferred from Experiment | sequence | 9
microscopy evidence | gene_ex | 9
mutant phenotype evidence used in manual assertion | sequence | 10
Inferred from Sequence or Structural Similarity | genome_org | 11
fusion protein localization evidence | PomGeneExProt | 11
reporter gene assay evidence | PomGeneExRNA | 12
western blot evidence used in manual assertion | PomGeneExRNA | 13
in situ hybridization assay evidence | gene_ex | 14
microscopy evidence | PomGeneExProt | 15
transcript expression level evidence | PomGeneExRNA | 16
Inferred from high throughput direct assay | molecular_function | 17
curator inference used in manual assertion | PSI-MOD | 21
sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | fission_yeast_phenotype | 22
sequence similarity evidence | sequence | 25
Immunolocalization experiment data | fission_yeast_phenotype | 33
Inferred from Sequence or Structural Similarity | m_f_g | 41
Unknown | PSI-MOD | 43
Particle size and count assay | fission_yeast_phenotype | 44
Inferred from Genetic Interaction | cellular_component | 45
neural network method evidence used in manual assertion | PSI-MOD | 47
Epitope-tagged protein immunolocalization experiment data | fission_yeast_phenotype | 55
Inferred from Sequence Model | cellular_component | 57
Inferred from Physical Interaction | biological_process | 57
RNA protection assay evidence | PomGeneExRNA | 58
Inferred from Mutant Phenotype | cellular_component | 59
reverse transcription polymerase chain reaction transcription evidence | PomGeneExRNA | 60
Inferred from Sequence or Structural Similarity | warning | 65
experimental evidence used in manual assertion | PSI-MOD | 75
Chromatography evidence | fission_yeast_phenotype | 82
Plasmid maintenance assay evidence | fission_yeast_phenotype | 82
Non-traceable Author Statement | cellular_component | 85
Traceable Author Statement | cellular_component | 99
Inferred from Sequence or Structural Similarity | PSI-MOD | 100
Western blot evidence | PomGeneExProt | 107
Non-traceable Author Statement | molecular_function | 109
Inferred from Sequence Model | biological_process | 117
Northern assay evidence | fission_yeast_phenotype | 117
Northern assay evidence | PomGeneExRNA | 124
Inferred from Genetic Interaction | molecular_function | 126
reporter gene assay evidence | PomGeneExProt | 136
Traceable Author Statement | molecular_function | 145
Traceable Author Statement | biological_process | 147
western blot evidence used in manual assertion | fission_yeast_phenotype | 147
tryptic phosphopeptide mapping assay evidence used in automatic assertion | fission_yeast_phenotype | 149
quantitative PCR | PomGeneExRNA | 150
sequence similarity evidence used in manual assertion | sequence | 155
experimental evidence | PomGeneExRNA | 198
Inferred by Curator | molecular_function | 199
Inferred from Electronic Annotation | cellular_component | 205
high throughput nucleotide sequencing assay evidence | fission_yeast_phenotype | 206
Inferred from Sequence or Structural Similarity | cellular_component | 232
Electrophoretic mobility shift assay data | fission_yeast_phenotype | 256
sequence similarity evidence used in manual assertion | PSI-MOD | 263
Non-traceable Author Statement | biological_process | 283
Inferred from Sequence or Structural Similarity | molecular_function | 289
Inferred from Physical Interaction | cellular_component | 289
Inferred from Electronic Annotation | biological_process | 304
Inferred from Sequence or Structural Similarity | biological_process | 367
match to sequence model evidence used in manual assertion | sequence | 425
western blot evidence used in manual assertion | PomGeneExProt | 437
experimental phenotypic evidence | fission_yeast_phenotype | 493
Inferred from Experiment | cellular_component | 514
Inferred from Genetic Interaction | biological_process | 530
Inferred by Curator | cellular_component | 544
mass spectrometry evidence | PomGeneExProt | 614
Inferred from Direct Assay | biological_process | 654
microscopy evidence used in manual assertion | fission_yeast_phenotype | 659
Inferred from Sequence Orthology | molecular_function | 686
ribosome profiling evidence | PomGeneExRD | 731
Inferred from Experiment | biological_process | 751
northern assay evidence used in manual assertion | PomGeneExRNA | 796
Inferred from Sequence Orthology | cellular_component | 806
Inferred by Curator | biological_process | 889
match to sequence model evidence | sequence | 941
Inferred from Sequence Model | molecular_function | 942
Inferred from Mutant Phenotype | molecular_function | 1069
Inferred from Experiment | molecular_function | 1120
competitive growth assay evidence | fission_yeast_phenotype | 1195
Substance quantification | fission_yeast_phenotype | 1245
Co-immunoprecipitation experiment | fission_yeast_phenotype | 1262
differential hybridization evidence | PSI-MOD | 1287
Inferred from Sequence Orthology | biological_process | 1305
match to sequence model evidence used in manual assertion | PSI-MOD | 1316
quantitative PCR | fission_yeast_phenotype | 1321
Inferred from Electronic Annotation | molecular_function | 1463
Inferred from high throughput mutant phenotype | molecular_function | 1535
Inferred from Biological aspect of Ancestor | cellular_component | 1877
high throughput evidence used in manual assertion | fission_yeast_phenotype | 1964
high throughput evidence used in manual assertion | PomGeneExProt | 2018
Inferred from Direct Assay | molecular_function | 2126
cell viability assay evidence | fission_yeast_phenotype | 2163
Flow cytometry data | fission_yeast_phenotype | 2202
Inferred from Biological aspect of Ancestor | molecular_function | 2350
Inferred from Physical Interaction | molecular_function | 2361
Inferred from Biological aspect of Ancestor | biological_process | 2378
Enzyme assay data | fission_yeast_phenotype | 2523
Chromatin immunoprecipitation experiment | fission_yeast_phenotype | 2605
gel electrophoresis evidence | fission_yeast_phenotype | 2622
Other | fission_yeast_phenotype | 2636
high throughput evidence used in manual assertion | PSI-MOD | 3226
Inferred from Direct Assay | PSI-MOD | 3292
reporter gene assay evidence | fission_yeast_phenotype | 3577
expression microarray evidence | PomGeneExRNA | 3593
Inferred from Mutant Phenotype | biological_process | 3737
RNA-sequencing evidence | PomGeneExRNA | 3985
Western blot assay | fission_yeast_phenotype | 5017
transcript expression level evidence | fission_yeast_phenotype | 5109
Inferred from Direct Assay | cellular_component | 6165
Inferred from high throughput direct assay | cellular_component | 6652
experimental evidence | PSI-MOD | 8138
mass spectrometry evidence | PSI-MOD | 8352
mass spectrometry evidence | gene_ex | 13682
experimental evidence | gene_ex | 19958
microscopy evidence | fission_yeast_phenotype | 39875
tryptic phosphopeptide mapping assay evidence used in automatic assertion | PSI-MOD | 45049
cell growth assay evidence | fission_yeast_phenotype | 116789
(148 rows)
annotation counts by evidence code and cv type, sorted by cv evidence code:
ev_code | cv_name | count
----------------------------------------------------------------------------------+--------------------------+--------
Chromatin immunoprecipitation experiment | fission_yeast_phenotype | 2605
Chromatography evidence | fission_yeast_phenotype | 82
Co-immunoprecipitation experiment | fission_yeast_phenotype | 1262
ECO:0000015 | sequence | 1
Electrophoretic mobility shift assay data | fission_yeast_phenotype | 256
Enzyme assay data | fission_yeast_phenotype | 2523
Epitope-tagged protein immunolocalization experiment data | fission_yeast_phenotype | 55
Flow cytometry data | fission_yeast_phenotype | 2202
Immunolocalization experiment data | fission_yeast_phenotype | 33
Inferred by Curator | biological_process | 889
Inferred by Curator | cellular_component | 544
Inferred by Curator | molecular_function | 199
Inferred from Biological aspect of Ancestor | biological_process | 2378
Inferred from Biological aspect of Ancestor | cellular_component | 1877
Inferred from Biological aspect of Ancestor | molecular_function | 2350
Inferred from Direct Assay | PSI-MOD | 3292
Inferred from Direct Assay | biological_process | 654
Inferred from Direct Assay | cellular_component | 6165
Inferred from Direct Assay | misc | 1
Inferred from Direct Assay | molecular_function | 2126
Inferred from Direct Assay | subunit_composition | 4
Inferred from Electronic Annotation | biological_process | 304
Inferred from Electronic Annotation | cellular_component | 205
Inferred from Electronic Annotation | molecular_function | 1463
Inferred from Experiment | biological_process | 751
Inferred from Experiment | cellular_component | 514
Inferred from Experiment | molecular_function | 1120
Inferred from Experiment | sequence | 9
Inferred from Expression Pattern | biological_process | 7
Inferred from Genetic Interaction | biological_process | 530
Inferred from Genetic Interaction | cellular_component | 45
Inferred from Genetic Interaction | molecular_function | 126
Inferred from Key Residues | molecular_function | 1
Inferred from Mutant Phenotype | PSI-MOD | 1
Inferred from Mutant Phenotype | biological_process | 3737
Inferred from Mutant Phenotype | cellular_component | 59
Inferred from Mutant Phenotype | misc | 4
Inferred from Mutant Phenotype | molecular_function | 1069
Inferred from Physical Interaction | biological_process | 57
Inferred from Physical Interaction | cellular_component | 289
Inferred from Physical Interaction | misc | 2
Inferred from Physical Interaction | molecular_function | 2361
Inferred from Sequence Model | PSI-MOD | 2
Inferred from Sequence Model | biological_process | 117
Inferred from Sequence Model | cellular_component | 57
Inferred from Sequence Model | molecular_function | 942
Inferred from Sequence Orthology | biological_process | 1305
Inferred from Sequence Orthology | cellular_component | 806
Inferred from Sequence Orthology | molecular_function | 686
Inferred from Sequence or Structural Similarity | PSI-MOD | 100
Inferred from Sequence or Structural Similarity | biological_process | 367
Inferred from Sequence or Structural Similarity | cellular_component | 232
Inferred from Sequence or Structural Similarity | genome_org | 11
Inferred from Sequence or Structural Similarity | m_f_g | 41
Inferred from Sequence or Structural Similarity | misc | 1
Inferred from Sequence or Structural Similarity | molecular_function | 289
Inferred from Sequence or Structural Similarity | pombase_family_or_domain | 6
Inferred from Sequence or Structural Similarity | subunit_composition | 1
Inferred from Sequence or Structural Similarity | warning | 65
Inferred from high throughput direct assay | cellular_component | 6652
Inferred from high throughput direct assay | molecular_function | 17
Inferred from high throughput mutant phenotype | molecular_function | 1535
Non-traceable Author Statement | biological_process | 283
Non-traceable Author Statement | cellular_component | 85
Non-traceable Author Statement | complementation | 1
Non-traceable Author Statement | molecular_function | 109
Northern assay evidence | PomGeneExRNA | 124
Northern assay evidence | fission_yeast_phenotype | 117
Other | fission_yeast_phenotype | 2636
Other direct assay | fission_yeast_phenotype | 8
Particle size and count assay | fission_yeast_phenotype | 44
Plasmid maintenance assay evidence | fission_yeast_phenotype | 82
RNA detection assay evidence | gene_ex | 2
RNA protection assay evidence | PomGeneExRNA | 58
RNA-sequencing evidence | PomGeneExRNA | 3985
Substance quantification | fission_yeast_phenotype | 1245
Traceable Author Statement | PSI-MOD | 1
Traceable Author Statement | biological_process | 147
Traceable Author Statement | cellular_component | 99
Traceable Author Statement | molecular_function | 145
Traceable Author Statement | pombase_family_or_domain | 5
Unknown | PSI-MOD | 43
Western blot assay | fission_yeast_phenotype | 5017
Western blot evidence | PomGeneExProt | 107
author statement supported by traceable reference used in manual assertion | sequence | 1
author statement without traceable support used in manual assertion | PSI-MOD | 1
cell growth assay evidence | fission_yeast_phenotype | 116789
cell viability assay evidence | fission_yeast_phenotype | 2163
combinatorial computational and experimental evidence used in manual assertion | PSI-MOD | 1
competitive growth assay evidence | fission_yeast_phenotype | 1195
curator inference used in manual assertion | PSI-MOD | 21
curator inference used in manual assertion | sequence | 6
differential hybridization evidence | PSI-MOD | 1287
differential hybridization evidence | PomGeneExRNA | 1
direct assay evidence used in manual assertion | sequence | 7
experimental evidence | PSI-MOD | 8138
experimental evidence | PomGeneExProt | 1
experimental evidence | PomGeneExRNA | 198
experimental evidence | gene_ex | 19958
experimental evidence used in manual assertion | PSI-MOD | 75
experimental evidence used in manual assertion | sequence | 4
experimental phenotypic evidence | fission_yeast_phenotype | 493
expression microarray evidence | PomGeneExRNA | 3593
fusion protein localization evidence | PomGeneExProt | 11
gel electrophoresis evidence | fission_yeast_phenotype | 2622
high throughput evidence used in manual assertion | PSI-MOD | 3226
high throughput evidence used in manual assertion | PomGeneExProt | 2018
high throughput evidence used in manual assertion | fission_yeast_phenotype | 1964
high throughput nucleotide sequencing assay evidence | fission_yeast_phenotype | 206
immunofluorescence evidence | PomGeneExProt | 6
in situ hybridization assay evidence | gene_ex | 14
in situ hybridization evidence used in manual assertion | PomGeneExRNA | 5
mass spectrometry evidence | PSI-MOD | 8352
mass spectrometry evidence | PomGeneExProt | 614
mass spectrometry evidence | gene_ex | 13682
match to sequence model evidence | sequence | 941
match to sequence model evidence used in manual assertion | PSI-MOD | 1316
match to sequence model evidence used in manual assertion | sequence | 425
microscopy evidence | PomGeneExProt | 15
microscopy evidence | fission_yeast_phenotype | 39875
microscopy evidence | gene_ex | 9
microscopy evidence used in manual assertion | fission_yeast_phenotype | 659
mutant phenotype evidence used in manual assertion | sequence | 10
neural network method evidence used in manual assertion | PSI-MOD | 47
northern assay evidence used in manual assertion | PomGeneExProt | 5
northern assay evidence used in manual assertion | PomGeneExRNA | 796
protein expression level evidence based on western blot used in manual assertion | gene_ex | 2
quantitative PCR | PomGeneExProt | 3
quantitative PCR | PomGeneExRNA | 150
quantitative PCR | fission_yeast_phenotype | 1321
quantitative polymerase chain reaction evidence used in manual assertion | PomGeneExRNA | 8
reporter gene assay evidence | PomGeneExProt | 136
reporter gene assay evidence | PomGeneExRNA | 12
reporter gene assay evidence | fission_yeast_phenotype | 3577
reverse transcription polymerase chain reaction transcription evidence | PomGeneExRNA | 60
ribosome profiling evidence | PomGeneExRD | 731
sequence similarity evidence | sequence | 25
sequence similarity evidence used in manual assertion | PSI-MOD | 263
sequence similarity evidence used in manual assertion | sequence | 155
sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | PomGeneExProt | 2
sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | fission_yeast_phenotype | 22
transcript expression level evidence | PomGeneExRNA | 16
transcript expression level evidence | fission_yeast_phenotype | 5109
tryptic phosphopeptide mapping assay evidence used in automatic assertion | PSI-MOD | 45049
tryptic phosphopeptide mapping assay evidence used in automatic assertion | fission_yeast_phenotype | 149
western blot evidence used in manual assertion | PomGeneExProt | 437
western blot evidence used in manual assertion | PomGeneExRNA | 13
western blot evidence used in manual assertion | fission_yeast_phenotype | 147
(148 rows)
total:
count
--------
466107
(1 row)
counts of annotation from Canto, by type:
count | cv_name
-------+------------------------------------
9 | sequence
101 | PomGeneExProt
472 | PomGeneExRNA
2379 | PSI-MOD
4794 | biological_process
5270 | molecular_function
6068 | cellular_component
42969 | PomBase annotation extension terms
78404 | fission_yeast_phenotype
(9 rows)
total
-------
97497
(1 row)