counts of all annotation by type: count | cv_name --------+-------------------------------------- 6 | external_link 22 | ex_tools 23 | pathway 26 | cat_act 76 | m_f_g 161 | genome_org 195 | subunit_composition 407 | EC numbers 445 | misc 459 | complementation 731 | PomGeneExRD 1008 | name_description 1662 | sequence 1703 | warning 1864 | pombase_family_or_domain 3313 | mondo 3346 | PomGeneExProt 5145 | PomBase gene characterisation status 9066 | PomGeneExRNA 11654 | biological_process 14588 | molecular_function 17767 | cellular_component 25229 | species_dist 33667 | gene_ex 68386 | PomBase gene products 71024 | PSI-MOD 195458 | fission_yeast_phenotype (27 rows) annotation counts by evidence code and cv type, sorted by cv name: ev_code | cv_name | count ----------------------------------------------------------------------------------+--------------------------+-------- Inferred from Direct Assay | PSI-MOD | 3298 Inferred from Mutant Phenotype | PSI-MOD | 1 Inferred from Sequence Model | PSI-MOD | 2 Inferred from Sequence or Structural Similarity | PSI-MOD | 100 Traceable Author Statement | PSI-MOD | 1 Unknown | PSI-MOD | 43 author statement without traceable support used in manual assertion | PSI-MOD | 1 combinatorial computational and experimental evidence used in manual assertion | PSI-MOD | 1 curator inference used in manual assertion | PSI-MOD | 21 differential hybridization evidence | PSI-MOD | 1287 experimental evidence | PSI-MOD | 8138 experimental evidence used in manual assertion | PSI-MOD | 75 high throughput evidence used in manual assertion | PSI-MOD | 3226 mass spectrometry evidence | PSI-MOD | 8352 match to sequence model evidence used in manual assertion | PSI-MOD | 1119 neural network method evidence used in manual assertion | PSI-MOD | 47 sequence similarity evidence used in manual assertion | PSI-MOD | 263 tryptic phosphopeptide mapping assay evidence used in automatic assertion | PSI-MOD | 45049 Western blot evidence | PomGeneExProt | 108 experimental evidence | PomGeneExProt | 1 fusion protein localization evidence | PomGeneExProt | 11 high throughput evidence used in manual assertion | PomGeneExProt | 2012 immunofluorescence evidence | PomGeneExProt | 6 mass spectrometry evidence | PomGeneExProt | 614 microscopy evidence | PomGeneExProt | 18 northern assay evidence used in manual assertion | PomGeneExProt | 5 reporter gene assay evidence | PomGeneExProt | 129 sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | PomGeneExProt | 2 western blot evidence used in manual assertion | PomGeneExProt | 436 ribosome profiling evidence | PomGeneExRD | 731 Northern assay evidence | PomGeneExRNA | 124 RNA protection assay evidence | PomGeneExRNA | 58 RNA-sequencing evidence | PomGeneExRNA | 3982 differential hybridization evidence | PomGeneExRNA | 1 experimental evidence | PomGeneExRNA | 198 expression microarray evidence | PomGeneExRNA | 3614 in situ hybridization evidence used in manual assertion | PomGeneExRNA | 5 northern assay evidence used in manual assertion | PomGeneExRNA | 796 quantitative PCR | PomGeneExRNA | 153 quantitative polymerase chain reaction evidence used in manual assertion | PomGeneExRNA | 8 reporter gene assay evidence | PomGeneExRNA | 19 reverse transcription polymerase chain reaction transcription evidence | PomGeneExRNA | 60 transcript expression level evidence | PomGeneExRNA | 16 western blot evidence used in manual assertion | PomGeneExRNA | 14 Inferred by Curator | biological_process | 886 Inferred from Biological aspect of Ancestor | biological_process | 2368 Inferred from Direct Assay | biological_process | 652 Inferred from Electronic Annotation | biological_process | 359 Inferred from Experiment | biological_process | 769 Inferred from Expression Pattern | biological_process | 7 Inferred from Genetic Interaction | biological_process | 529 Inferred from Mutant Phenotype | biological_process | 3733 Inferred from Physical Interaction | biological_process | 57 Inferred from Sequence Model | biological_process | 116 Inferred from Sequence Orthology | biological_process | 1267 Inferred from Sequence or Structural Similarity | biological_process | 351 Non-traceable Author Statement | biological_process | 261 Traceable Author Statement | biological_process | 160 Inferred by Curator | cellular_component | 541 Inferred from Biological aspect of Ancestor | cellular_component | 1813 Inferred from Direct Assay | cellular_component | 6174 Inferred from Electronic Annotation | cellular_component | 280 Inferred from Experiment | cellular_component | 597 Inferred from Genetic Interaction | cellular_component | 45 Inferred from Mutant Phenotype | cellular_component | 59 Inferred from Physical Interaction | cellular_component | 291 Inferred from Sequence Model | cellular_component | 57 Inferred from Sequence Orthology | cellular_component | 796 Inferred from Sequence or Structural Similarity | cellular_component | 230 Inferred from high throughput direct assay | cellular_component | 6647 Non-traceable Author Statement | cellular_component | 83 Traceable Author Statement | cellular_component | 103 Non-traceable Author Statement | complementation | 1 Chromatin immunoprecipitation experiment | fission_yeast_phenotype | 2633 Chromatography evidence | fission_yeast_phenotype | 82 Co-immunoprecipitation experiment | fission_yeast_phenotype | 1264 Electrophoretic mobility shift assay data | fission_yeast_phenotype | 256 Enzyme assay data | fission_yeast_phenotype | 2524 Epitope-tagged protein immunolocalization experiment data | fission_yeast_phenotype | 57 Flow cytometry data | fission_yeast_phenotype | 2202 Immunolocalization experiment data | fission_yeast_phenotype | 33 Northern assay evidence | fission_yeast_phenotype | 117 Other | fission_yeast_phenotype | 2680 Other direct assay | fission_yeast_phenotype | 8 Particle size and count assay | fission_yeast_phenotype | 44 Plasmid maintenance assay evidence | fission_yeast_phenotype | 82 Substance quantification | fission_yeast_phenotype | 1246 Western blot assay | fission_yeast_phenotype | 5062 cell growth assay evidence | fission_yeast_phenotype | 117035 cell viability assay evidence | fission_yeast_phenotype | 2163 competitive growth assay evidence | fission_yeast_phenotype | 1667 experimental phenotypic evidence | fission_yeast_phenotype | 493 gel electrophoresis evidence | fission_yeast_phenotype | 2622 high throughput evidence used in manual assertion | fission_yeast_phenotype | 1964 high throughput nucleotide sequencing assay evidence | fission_yeast_phenotype | 206 microscopy evidence | fission_yeast_phenotype | 39972 microscopy evidence used in manual assertion | fission_yeast_phenotype | 659 quantitative PCR | fission_yeast_phenotype | 1334 reporter gene assay evidence | fission_yeast_phenotype | 3577 sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | fission_yeast_phenotype | 22 transcript expression level evidence | fission_yeast_phenotype | 5158 tryptic phosphopeptide mapping assay evidence used in automatic assertion | fission_yeast_phenotype | 149 western blot evidence used in manual assertion | fission_yeast_phenotype | 147 RNA detection assay evidence | gene_ex | 2 experimental evidence | gene_ex | 19958 in situ hybridization assay evidence | gene_ex | 14 mass spectrometry evidence | gene_ex | 13682 microscopy evidence | gene_ex | 9 protein expression level evidence based on western blot used in manual assertion | gene_ex | 2 Inferred from Sequence or Structural Similarity | genome_org | 11 Inferred from Sequence or Structural Similarity | m_f_g | 41 Inferred from Direct Assay | misc | 1 Inferred from Mutant Phenotype | misc | 4 Inferred from Physical Interaction | misc | 2 Inferred from Sequence or Structural Similarity | misc | 1 Inferred by Curator | molecular_function | 195 Inferred from Biological aspect of Ancestor | molecular_function | 2370 Inferred from Direct Assay | molecular_function | 2122 Inferred from Electronic Annotation | molecular_function | 1519 Inferred from Experiment | molecular_function | 1133 Inferred from Genetic Interaction | molecular_function | 123 Inferred from Key Residues | molecular_function | 1 Inferred from Mutant Phenotype | molecular_function | 1072 Inferred from Physical Interaction | molecular_function | 2357 Inferred from Sequence Model | molecular_function | 935 Inferred from Sequence Orthology | molecular_function | 678 Inferred from Sequence or Structural Similarity | molecular_function | 274 Inferred from high throughput direct assay | molecular_function | 17 Inferred from high throughput mutant phenotype | molecular_function | 1535 Non-traceable Author Statement | molecular_function | 108 Traceable Author Statement | molecular_function | 148 Inferred from Sequence or Structural Similarity | pombase_family_or_domain | 6 Traceable Author Statement | pombase_family_or_domain | 5 ECO:0000015 | sequence | 1 Inferred from Experiment | sequence | 9 author statement supported by traceable reference used in manual assertion | sequence | 1 curator inference used in manual assertion | sequence | 6 direct assay evidence used in manual assertion | sequence | 7 experimental evidence used in manual assertion | sequence | 4 match to sequence model evidence | sequence | 941 match to sequence model evidence used in manual assertion | sequence | 425 mutant phenotype evidence used in manual assertion | sequence | 10 sequence similarity evidence | sequence | 25 sequence similarity evidence used in manual assertion | sequence | 155 Inferred from Direct Assay | subunit_composition | 4 Inferred from Sequence or Structural Similarity | subunit_composition | 1 Inferred from Sequence or Structural Similarity | warning | 65 (147 rows) annotation counts by evidence code and cv type, sorted by count: ev_code | cv_name | count ----------------------------------------------------------------------------------+--------------------------+-------- Inferred from Mutant Phenotype | PSI-MOD | 1 Non-traceable Author Statement | complementation | 1 ECO:0000015 | sequence | 1 experimental evidence | PomGeneExProt | 1 Inferred from Sequence or Structural Similarity | subunit_composition | 1 author statement without traceable support used in manual assertion | PSI-MOD | 1 Traceable Author Statement | PSI-MOD | 1 Inferred from Sequence or Structural Similarity | misc | 1 author statement supported by traceable reference used in manual assertion | sequence | 1 combinatorial computational and experimental evidence used in manual assertion | PSI-MOD | 1 Inferred from Direct Assay | misc | 1 differential hybridization evidence | PomGeneExRNA | 1 Inferred from Key Residues | molecular_function | 1 Inferred from Sequence Model | PSI-MOD | 2 sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | PomGeneExProt | 2 Inferred from Physical Interaction | misc | 2 protein expression level evidence based on western blot used in manual assertion | gene_ex | 2 RNA detection assay evidence | gene_ex | 2 Inferred from Direct Assay | subunit_composition | 4 experimental evidence used in manual assertion | sequence | 4 Inferred from Mutant Phenotype | misc | 4 in situ hybridization evidence used in manual assertion | PomGeneExRNA | 5 northern assay evidence used in manual assertion | PomGeneExProt | 5 Traceable Author Statement | pombase_family_or_domain | 5 Inferred from Sequence or Structural Similarity | pombase_family_or_domain | 6 immunofluorescence evidence | PomGeneExProt | 6 curator inference used in manual assertion | sequence | 6 Inferred from Expression Pattern | biological_process | 7 direct assay evidence used in manual assertion | sequence | 7 Other direct assay | fission_yeast_phenotype | 8 quantitative polymerase chain reaction evidence used in manual assertion | PomGeneExRNA | 8 Inferred from Experiment | sequence | 9 microscopy evidence | gene_ex | 9 mutant phenotype evidence used in manual assertion | sequence | 10 Inferred from Sequence or Structural Similarity | genome_org | 11 fusion protein localization evidence | PomGeneExProt | 11 western blot evidence used in manual assertion | PomGeneExRNA | 14 in situ hybridization assay evidence | gene_ex | 14 transcript expression level evidence | PomGeneExRNA | 16 Inferred from high throughput direct assay | molecular_function | 17 microscopy evidence | PomGeneExProt | 18 reporter gene assay evidence | PomGeneExRNA | 19 curator inference used in manual assertion | PSI-MOD | 21 sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | fission_yeast_phenotype | 22 sequence similarity evidence | sequence | 25 Immunolocalization experiment data | fission_yeast_phenotype | 33 Inferred from Sequence or Structural Similarity | m_f_g | 41 Unknown | PSI-MOD | 43 Particle size and count assay | fission_yeast_phenotype | 44 Inferred from Genetic Interaction | cellular_component | 45 neural network method evidence used in manual assertion | PSI-MOD | 47 Inferred from Physical Interaction | biological_process | 57 Epitope-tagged protein immunolocalization experiment data | fission_yeast_phenotype | 57 Inferred from Sequence Model | cellular_component | 57 RNA protection assay evidence | PomGeneExRNA | 58 Inferred from Mutant Phenotype | cellular_component | 59 reverse transcription polymerase chain reaction transcription evidence | PomGeneExRNA | 60 Inferred from Sequence or Structural Similarity | warning | 65 experimental evidence used in manual assertion | PSI-MOD | 75 Chromatography evidence | fission_yeast_phenotype | 82 Plasmid maintenance assay evidence | fission_yeast_phenotype | 82 Non-traceable Author Statement | cellular_component | 83 Inferred from Sequence or Structural Similarity | PSI-MOD | 100 Traceable Author Statement | cellular_component | 103 Non-traceable Author Statement | molecular_function | 108 Western blot evidence | PomGeneExProt | 108 Inferred from Sequence Model | biological_process | 116 Northern assay evidence | fission_yeast_phenotype | 117 Inferred from Genetic Interaction | molecular_function | 123 Northern assay evidence | PomGeneExRNA | 124 reporter gene assay evidence | PomGeneExProt | 129 western blot evidence used in manual assertion | fission_yeast_phenotype | 147 Traceable Author Statement | molecular_function | 148 tryptic phosphopeptide mapping assay evidence used in automatic assertion | fission_yeast_phenotype | 149 quantitative PCR | PomGeneExRNA | 153 sequence similarity evidence used in manual assertion | sequence | 155 Traceable Author Statement | biological_process | 160 Inferred by Curator | molecular_function | 195 experimental evidence | PomGeneExRNA | 198 high throughput nucleotide sequencing assay evidence | fission_yeast_phenotype | 206 Inferred from Sequence or Structural Similarity | cellular_component | 230 Electrophoretic mobility shift assay data | fission_yeast_phenotype | 256 Non-traceable Author Statement | biological_process | 261 sequence similarity evidence used in manual assertion | PSI-MOD | 263 Inferred from Sequence or Structural Similarity | molecular_function | 274 Inferred from Electronic Annotation | cellular_component | 280 Inferred from Physical Interaction | cellular_component | 291 Inferred from Sequence or Structural Similarity | biological_process | 351 Inferred from Electronic Annotation | biological_process | 359 match to sequence model evidence used in manual assertion | sequence | 425 western blot evidence used in manual assertion | PomGeneExProt | 436 experimental phenotypic evidence | fission_yeast_phenotype | 493 Inferred from Genetic Interaction | biological_process | 529 Inferred by Curator | cellular_component | 541 Inferred from Experiment | cellular_component | 597 mass spectrometry evidence | PomGeneExProt | 614 Inferred from Direct Assay | biological_process | 652 microscopy evidence used in manual assertion | fission_yeast_phenotype | 659 Inferred from Sequence Orthology | molecular_function | 678 ribosome profiling evidence | PomGeneExRD | 731 Inferred from Experiment | biological_process | 769 Inferred from Sequence Orthology | cellular_component | 796 northern assay evidence used in manual assertion | PomGeneExRNA | 796 Inferred by Curator | biological_process | 886 Inferred from Sequence Model | molecular_function | 935 match to sequence model evidence | sequence | 941 Inferred from Mutant Phenotype | molecular_function | 1072 match to sequence model evidence used in manual assertion | PSI-MOD | 1119 Inferred from Experiment | molecular_function | 1133 Substance quantification | fission_yeast_phenotype | 1246 Co-immunoprecipitation experiment | fission_yeast_phenotype | 1264 Inferred from Sequence Orthology | biological_process | 1267 differential hybridization evidence | PSI-MOD | 1287 quantitative PCR | fission_yeast_phenotype | 1334 Inferred from Electronic Annotation | molecular_function | 1519 Inferred from high throughput mutant phenotype | molecular_function | 1535 competitive growth assay evidence | fission_yeast_phenotype | 1667 Inferred from Biological aspect of Ancestor | cellular_component | 1813 high throughput evidence used in manual assertion | fission_yeast_phenotype | 1964 high throughput evidence used in manual assertion | PomGeneExProt | 2012 Inferred from Direct Assay | molecular_function | 2122 cell viability assay evidence | fission_yeast_phenotype | 2163 Flow cytometry data | fission_yeast_phenotype | 2202 Inferred from Physical Interaction | molecular_function | 2357 Inferred from Biological aspect of Ancestor | biological_process | 2368 Inferred from Biological aspect of Ancestor | molecular_function | 2370 Enzyme assay data | fission_yeast_phenotype | 2524 gel electrophoresis evidence | fission_yeast_phenotype | 2622 Chromatin immunoprecipitation experiment | fission_yeast_phenotype | 2633 Other | fission_yeast_phenotype | 2680 high throughput evidence used in manual assertion | PSI-MOD | 3226 Inferred from Direct Assay | PSI-MOD | 3298 reporter gene assay evidence | fission_yeast_phenotype | 3577 expression microarray evidence | PomGeneExRNA | 3614 Inferred from Mutant Phenotype | biological_process | 3733 RNA-sequencing evidence | PomGeneExRNA | 3982 Western blot assay | fission_yeast_phenotype | 5062 transcript expression level evidence | fission_yeast_phenotype | 5158 Inferred from Direct Assay | cellular_component | 6174 Inferred from high throughput direct assay | cellular_component | 6647 experimental evidence | PSI-MOD | 8138 mass spectrometry evidence | PSI-MOD | 8352 mass spectrometry evidence | gene_ex | 13682 experimental evidence | gene_ex | 19958 microscopy evidence | fission_yeast_phenotype | 39972 tryptic phosphopeptide mapping assay evidence used in automatic assertion | PSI-MOD | 45049 cell growth assay evidence | fission_yeast_phenotype | 117035 (147 rows) annotation counts by evidence code and cv type, sorted by cv evidence code: ev_code | cv_name | count ----------------------------------------------------------------------------------+--------------------------+-------- Chromatin immunoprecipitation experiment | fission_yeast_phenotype | 2633 Chromatography evidence | fission_yeast_phenotype | 82 Co-immunoprecipitation experiment | fission_yeast_phenotype | 1264 ECO:0000015 | sequence | 1 Electrophoretic mobility shift assay data | fission_yeast_phenotype | 256 Enzyme assay data | fission_yeast_phenotype | 2524 Epitope-tagged protein immunolocalization experiment data | fission_yeast_phenotype | 57 Flow cytometry data | fission_yeast_phenotype | 2202 Immunolocalization experiment data | fission_yeast_phenotype | 33 Inferred by Curator | biological_process | 886 Inferred by Curator | cellular_component | 541 Inferred by Curator | molecular_function | 195 Inferred from Biological aspect of Ancestor | biological_process | 2368 Inferred from Biological aspect of Ancestor | cellular_component | 1813 Inferred from Biological aspect of Ancestor | molecular_function | 2370 Inferred from Direct Assay | PSI-MOD | 3298 Inferred from Direct Assay | biological_process | 652 Inferred from Direct Assay | cellular_component | 6174 Inferred from Direct Assay | misc | 1 Inferred from Direct Assay | molecular_function | 2122 Inferred from Direct Assay | subunit_composition | 4 Inferred from Electronic Annotation | biological_process | 359 Inferred from Electronic Annotation | cellular_component | 280 Inferred from Electronic Annotation | molecular_function | 1519 Inferred from Experiment | biological_process | 769 Inferred from Experiment | cellular_component | 597 Inferred from Experiment | molecular_function | 1133 Inferred from Experiment | sequence | 9 Inferred from Expression Pattern | biological_process | 7 Inferred from Genetic Interaction | biological_process | 529 Inferred from Genetic Interaction | cellular_component | 45 Inferred from Genetic Interaction | molecular_function | 123 Inferred from Key Residues | molecular_function | 1 Inferred from Mutant Phenotype | PSI-MOD | 1 Inferred from Mutant Phenotype | biological_process | 3733 Inferred from Mutant Phenotype | cellular_component | 59 Inferred from Mutant Phenotype | misc | 4 Inferred from Mutant Phenotype | molecular_function | 1072 Inferred from Physical Interaction | biological_process | 57 Inferred from Physical Interaction | cellular_component | 291 Inferred from Physical Interaction | misc | 2 Inferred from Physical Interaction | molecular_function | 2357 Inferred from Sequence Model | PSI-MOD | 2 Inferred from Sequence Model | biological_process | 116 Inferred from Sequence Model | cellular_component | 57 Inferred from Sequence Model | molecular_function | 935 Inferred from Sequence Orthology | biological_process | 1267 Inferred from Sequence Orthology | cellular_component | 796 Inferred from Sequence Orthology | molecular_function | 678 Inferred from Sequence or Structural Similarity | PSI-MOD | 100 Inferred from Sequence or Structural Similarity | biological_process | 351 Inferred from Sequence or Structural Similarity | cellular_component | 230 Inferred from Sequence or Structural Similarity | genome_org | 11 Inferred from Sequence or Structural Similarity | m_f_g | 41 Inferred from Sequence or Structural Similarity | misc | 1 Inferred from Sequence or Structural Similarity | molecular_function | 274 Inferred from Sequence or Structural Similarity | pombase_family_or_domain | 6 Inferred from Sequence or Structural Similarity | subunit_composition | 1 Inferred from Sequence or Structural Similarity | warning | 65 Inferred from high throughput direct assay | cellular_component | 6647 Inferred from high throughput direct assay | molecular_function | 17 Inferred from high throughput mutant phenotype | molecular_function | 1535 Non-traceable Author Statement | biological_process | 261 Non-traceable Author Statement | cellular_component | 83 Non-traceable Author Statement | complementation | 1 Non-traceable Author Statement | molecular_function | 108 Northern assay evidence | PomGeneExRNA | 124 Northern assay evidence | fission_yeast_phenotype | 117 Other | fission_yeast_phenotype | 2680 Other direct assay | fission_yeast_phenotype | 8 Particle size and count assay | fission_yeast_phenotype | 44 Plasmid maintenance assay evidence | fission_yeast_phenotype | 82 RNA detection assay evidence | gene_ex | 2 RNA protection assay evidence | PomGeneExRNA | 58 RNA-sequencing evidence | PomGeneExRNA | 3982 Substance quantification | fission_yeast_phenotype | 1246 Traceable Author Statement | PSI-MOD | 1 Traceable Author Statement | biological_process | 160 Traceable Author Statement | cellular_component | 103 Traceable Author Statement | molecular_function | 148 Traceable Author Statement | pombase_family_or_domain | 5 Unknown | PSI-MOD | 43 Western blot assay | fission_yeast_phenotype | 5062 Western blot evidence | PomGeneExProt | 108 author statement supported by traceable reference used in manual assertion | sequence | 1 author statement without traceable support used in manual assertion | PSI-MOD | 1 cell growth assay evidence | fission_yeast_phenotype | 117035 cell viability assay evidence | fission_yeast_phenotype | 2163 combinatorial computational and experimental evidence used in manual assertion | PSI-MOD | 1 competitive growth assay evidence | fission_yeast_phenotype | 1667 curator inference used in manual assertion | PSI-MOD | 21 curator inference used in manual assertion | sequence | 6 differential hybridization evidence | PSI-MOD | 1287 differential hybridization evidence | PomGeneExRNA | 1 direct assay evidence used in manual assertion | sequence | 7 experimental evidence | PSI-MOD | 8138 experimental evidence | PomGeneExProt | 1 experimental evidence | PomGeneExRNA | 198 experimental evidence | gene_ex | 19958 experimental evidence used in manual assertion | PSI-MOD | 75 experimental evidence used in manual assertion | sequence | 4 experimental phenotypic evidence | fission_yeast_phenotype | 493 expression microarray evidence | PomGeneExRNA | 3614 fusion protein localization evidence | PomGeneExProt | 11 gel electrophoresis evidence | fission_yeast_phenotype | 2622 high throughput evidence used in manual assertion | PSI-MOD | 3226 high throughput evidence used in manual assertion | PomGeneExProt | 2012 high throughput evidence used in manual assertion | fission_yeast_phenotype | 1964 high throughput nucleotide sequencing assay evidence | fission_yeast_phenotype | 206 immunofluorescence evidence | PomGeneExProt | 6 in situ hybridization assay evidence | gene_ex | 14 in situ hybridization evidence used in manual assertion | PomGeneExRNA | 5 mass spectrometry evidence | PSI-MOD | 8352 mass spectrometry evidence | PomGeneExProt | 614 mass spectrometry evidence | gene_ex | 13682 match to sequence model evidence | sequence | 941 match to sequence model evidence used in manual assertion | PSI-MOD | 1119 match to sequence model evidence used in manual assertion | sequence | 425 microscopy evidence | PomGeneExProt | 18 microscopy evidence | fission_yeast_phenotype | 39972 microscopy evidence | gene_ex | 9 microscopy evidence used in manual assertion | fission_yeast_phenotype | 659 mutant phenotype evidence used in manual assertion | sequence | 10 neural network method evidence used in manual assertion | PSI-MOD | 47 northern assay evidence used in manual assertion | PomGeneExProt | 5 northern assay evidence used in manual assertion | PomGeneExRNA | 796 protein expression level evidence based on western blot used in manual assertion | gene_ex | 2 quantitative PCR | PomGeneExRNA | 153 quantitative PCR | fission_yeast_phenotype | 1334 quantitative polymerase chain reaction evidence used in manual assertion | PomGeneExRNA | 8 reporter gene assay evidence | PomGeneExProt | 129 reporter gene assay evidence | PomGeneExRNA | 19 reporter gene assay evidence | fission_yeast_phenotype | 3577 reverse transcription polymerase chain reaction transcription evidence | PomGeneExRNA | 60 ribosome profiling evidence | PomGeneExRD | 731 sequence similarity evidence | sequence | 25 sequence similarity evidence used in manual assertion | PSI-MOD | 263 sequence similarity evidence used in manual assertion | sequence | 155 sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | PomGeneExProt | 2 sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | fission_yeast_phenotype | 22 transcript expression level evidence | PomGeneExRNA | 16 transcript expression level evidence | fission_yeast_phenotype | 5158 tryptic phosphopeptide mapping assay evidence used in automatic assertion | PSI-MOD | 45049 tryptic phosphopeptide mapping assay evidence used in automatic assertion | fission_yeast_phenotype | 149 western blot evidence used in manual assertion | PomGeneExProt | 436 western blot evidence used in manual assertion | PomGeneExRNA | 14 western blot evidence used in manual assertion | fission_yeast_phenotype | 147 (147 rows) total: count -------- 467431 (1 row) counts of annotation from Canto, by type: count | cv_name -------+------------------------------------ 9 | sequence 105 | PomGeneExProt 493 | PomGeneExRNA 2385 | PSI-MOD 4808 | biological_process 5281 | molecular_function 6166 | cellular_component 43357 | PomBase annotation extension terms 78935 | fission_yeast_phenotype (9 rows) total ------- 98182 (1 row)