counts of all annotation by type:
count | cv_name
--------+--------------------------------------
6 | external_link
22 | ex_tools
23 | pathway
26 | cat_act
76 | m_f_g
162 | genome_org
196 | subunit_composition
407 | EC numbers
445 | misc
465 | complementation
731 | PomGeneExRD
1009 | name_description
1663 | sequence
1705 | warning
1864 | pombase_family_or_domain
3367 | mondo
4329 | PomGeneExProt
5146 | PomBase gene characterisation status
9067 | PomGeneExRNA
11819 | biological_process
17867 | cellular_component
19023 | molecular_function
25226 | species_dist
33667 | gene_ex
68509 | PomBase gene products
74507 | PSI-MOD
196660 | fission_yeast_phenotype
(27 rows)
annotation counts by evidence code and cv type, sorted by cv name:
ev_code | cv_name | count
----------------------------------------------------------------------------------+--------------------------+--------
Inferred from Direct Assay | PSI-MOD | 3299
Inferred from Mutant Phenotype | PSI-MOD | 1
Inferred from Sequence Model | PSI-MOD | 2
Inferred from Sequence or Structural Similarity | PSI-MOD | 100
Traceable Author Statement | PSI-MOD | 1
Unknown | PSI-MOD | 43
author statement without traceable support used in manual assertion | PSI-MOD | 1
combinatorial computational and experimental evidence used in manual assertion | PSI-MOD | 1
curator inference used in manual assertion | PSI-MOD | 21
differential hybridization evidence | PSI-MOD | 1287
experimental evidence | PSI-MOD | 8138
experimental evidence used in manual assertion | PSI-MOD | 75
high throughput evidence used in manual assertion | PSI-MOD | 6709
mass spectrometry evidence | PSI-MOD | 8352
match to sequence model evidence used in manual assertion | PSI-MOD | 1119
neural network method evidence used in manual assertion | PSI-MOD | 47
sequence similarity evidence used in manual assertion | PSI-MOD | 262
tryptic phosphopeptide mapping assay evidence used in automatic assertion | PSI-MOD | 45049
Western blot evidence | PomGeneExProt | 115
experimental evidence | PomGeneExProt | 1
fusion protein localization evidence | PomGeneExProt | 11
high throughput evidence used in manual assertion | PomGeneExProt | 2987
immunofluorescence evidence | PomGeneExProt | 6
mass spectrometry evidence | PomGeneExProt | 614
microscopy evidence | PomGeneExProt | 19
northern assay evidence used in manual assertion | PomGeneExProt | 5
reporter gene assay evidence | PomGeneExProt | 129
sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | PomGeneExProt | 2
western blot evidence used in manual assertion | PomGeneExProt | 436
ribosome profiling evidence | PomGeneExRD | 731
Northern assay evidence | PomGeneExRNA | 125
RNA protection assay evidence | PomGeneExRNA | 58
RNA-sequencing evidence | PomGeneExRNA | 3982
differential hybridization evidence | PomGeneExRNA | 1
experimental evidence | PomGeneExRNA | 198
expression microarray evidence | PomGeneExRNA | 3614
in situ hybridization evidence used in manual assertion | PomGeneExRNA | 5
northern assay evidence used in manual assertion | PomGeneExRNA | 796
quantitative PCR | PomGeneExRNA | 153
quantitative polymerase chain reaction evidence used in manual assertion | PomGeneExRNA | 8
reporter gene assay evidence | PomGeneExRNA | 19
reverse transcription polymerase chain reaction transcription evidence | PomGeneExRNA | 60
transcript expression level evidence | PomGeneExRNA | 16
western blot evidence used in manual assertion | PomGeneExRNA | 14
Inferred by Curator | biological_process | 899
Inferred from Biological aspect of Ancestor | biological_process | 2362
Inferred from Direct Assay | biological_process | 649
Inferred from Electronic Annotation | biological_process | 441
Inferred from Experiment | biological_process | 778
Inferred from Expression Pattern | biological_process | 8
Inferred from Genetic Interaction | biological_process | 534
Inferred from Mutant Phenotype | biological_process | 3732
Inferred from Physical Interaction | biological_process | 57
Inferred from Sequence Model | biological_process | 101
Inferred from Sequence Orthology | biological_process | 1235
Inferred from Sequence or Structural Similarity | biological_process | 343
Inferred from high throughput direct assay | biological_process | 68
Non-traceable Author Statement | biological_process | 253
Traceable Author Statement | biological_process | 161
Inferred by Curator | cellular_component | 562
Inferred from Biological aspect of Ancestor | cellular_component | 1811
Inferred from Direct Assay | cellular_component | 6210
Inferred from Electronic Annotation | cellular_component | 301
Inferred from Experiment | cellular_component | 611
Inferred from Genetic Interaction | cellular_component | 44
Inferred from Mutant Phenotype | cellular_component | 59
Inferred from Physical Interaction | cellular_component | 294
Inferred from Sequence Model | cellular_component | 56
Inferred from Sequence Orthology | cellular_component | 787
Inferred from Sequence or Structural Similarity | cellular_component | 224
Inferred from high throughput direct assay | cellular_component | 6644
Non-traceable Author Statement | cellular_component | 91
Traceable Author Statement | cellular_component | 103
Non-traceable Author Statement | complementation | 1
Chromatin immunoprecipitation experiment | fission_yeast_phenotype | 2686
Chromatography evidence | fission_yeast_phenotype | 82
Co-immunoprecipitation experiment | fission_yeast_phenotype | 1273
ECO:0006068 | fission_yeast_phenotype | 229
Electrophoretic mobility shift assay data | fission_yeast_phenotype | 256
Enzyme assay data | fission_yeast_phenotype | 2524
Epitope-tagged protein immunolocalization experiment data | fission_yeast_phenotype | 61
Flow cytometry data | fission_yeast_phenotype | 2204
Immunolocalization experiment data | fission_yeast_phenotype | 35
Northern assay evidence | fission_yeast_phenotype | 117
Other | fission_yeast_phenotype | 2703
Other direct assay | fission_yeast_phenotype | 8
Particle size and count assay | fission_yeast_phenotype | 44
Plasmid maintenance assay evidence | fission_yeast_phenotype | 82
Substance quantification evidence | fission_yeast_phenotype | 1246
Western blot assay | fission_yeast_phenotype | 5180
cell growth assay evidence | fission_yeast_phenotype | 117348
cell viability assay evidence | fission_yeast_phenotype | 2163
competitive growth assay evidence | fission_yeast_phenotype | 1667
experimental phenotypic evidence | fission_yeast_phenotype | 493
gel electrophoresis evidence | fission_yeast_phenotype | 2654
high throughput evidence used in manual assertion | fission_yeast_phenotype | 1964
high throughput nucleotide sequencing assay evidence | fission_yeast_phenotype | 206
microscopy evidence | fission_yeast_phenotype | 40317
microscopy evidence used in manual assertion | fission_yeast_phenotype | 659
quantitative PCR | fission_yeast_phenotype | 1343
reporter gene assay evidence | fission_yeast_phenotype | 3622
sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | fission_yeast_phenotype | 22
transcript expression level evidence | fission_yeast_phenotype | 5176
tryptic phosphopeptide mapping assay evidence used in automatic assertion | fission_yeast_phenotype | 149
western blot evidence used in manual assertion | fission_yeast_phenotype | 147
RNA detection assay evidence | gene_ex | 2
experimental evidence | gene_ex | 19958
in situ hybridization assay evidence | gene_ex | 14
mass spectrometry evidence | gene_ex | 13682
microscopy evidence | gene_ex | 9
protein expression level evidence based on western blot used in manual assertion | gene_ex | 2
Inferred from Sequence or Structural Similarity | genome_org | 11
Inferred from Sequence or Structural Similarity | m_f_g | 41
Inferred from Direct Assay | misc | 1
Inferred from Mutant Phenotype | misc | 4
Inferred from Physical Interaction | misc | 2
Inferred from Sequence or Structural Similarity | misc | 1
Inferred by Curator | molecular_function | 191
Inferred from Biological aspect of Ancestor | molecular_function | 2344
Inferred from Direct Assay | molecular_function | 2153
Inferred from Electronic Annotation | molecular_function | 1524
Inferred from Experiment | molecular_function | 1156
Inferred from Genetic Interaction | molecular_function | 122
Inferred from Key Residues | molecular_function | 1
Inferred from Mutant Phenotype | molecular_function | 1071
Inferred from Physical Interaction | molecular_function | 2327
Inferred from Sequence Model | molecular_function | 894
Inferred from Sequence Orthology | molecular_function | 668
Inferred from Sequence or Structural Similarity | molecular_function | 276
Inferred from high throughput direct assay | molecular_function | 4510
Inferred from high throughput mutant phenotype | molecular_function | 1535
Non-traceable Author Statement | molecular_function | 103
Traceable Author Statement | molecular_function | 147
Inferred from Sequence or Structural Similarity | pombase_family_or_domain | 6
Traceable Author Statement | pombase_family_or_domain | 5
ECO:0000015 | sequence | 1
Inferred from Experiment | sequence | 10
author statement supported by traceable reference used in manual assertion | sequence | 1
curator inference used in manual assertion | sequence | 6
direct assay evidence used in manual assertion | sequence | 7
experimental evidence used in manual assertion | sequence | 4
match to sequence model evidence | sequence | 941
match to sequence model evidence used in manual assertion | sequence | 425
mutant phenotype evidence used in manual assertion | sequence | 10
sequence similarity evidence | sequence | 25
sequence similarity evidence used in manual assertion | sequence | 155
Inferred from Direct Assay | subunit_composition | 4
Inferred from Sequence or Structural Similarity | subunit_composition | 1
Inferred from Sequence or Structural Similarity | warning | 65
(149 rows)
annotation counts by evidence code and cv type, sorted by count:
ev_code | cv_name | count
----------------------------------------------------------------------------------+--------------------------+--------
Inferred from Sequence or Structural Similarity | subunit_composition | 1
Inferred from Sequence or Structural Similarity | misc | 1
Inferred from Key Residues | molecular_function | 1
author statement supported by traceable reference used in manual assertion | sequence | 1
experimental evidence | PomGeneExProt | 1
Inferred from Direct Assay | misc | 1
author statement without traceable support used in manual assertion | PSI-MOD | 1
Non-traceable Author Statement | complementation | 1
ECO:0000015 | sequence | 1
Traceable Author Statement | PSI-MOD | 1
Inferred from Mutant Phenotype | PSI-MOD | 1
combinatorial computational and experimental evidence used in manual assertion | PSI-MOD | 1
differential hybridization evidence | PomGeneExRNA | 1
Inferred from Sequence Model | PSI-MOD | 2
Inferred from Physical Interaction | misc | 2
protein expression level evidence based on western blot used in manual assertion | gene_ex | 2
sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | PomGeneExProt | 2
RNA detection assay evidence | gene_ex | 2
Inferred from Direct Assay | subunit_composition | 4
Inferred from Mutant Phenotype | misc | 4
experimental evidence used in manual assertion | sequence | 4
Traceable Author Statement | pombase_family_or_domain | 5
northern assay evidence used in manual assertion | PomGeneExProt | 5
in situ hybridization evidence used in manual assertion | PomGeneExRNA | 5
immunofluorescence evidence | PomGeneExProt | 6
curator inference used in manual assertion | sequence | 6
Inferred from Sequence or Structural Similarity | pombase_family_or_domain | 6
direct assay evidence used in manual assertion | sequence | 7
quantitative polymerase chain reaction evidence used in manual assertion | PomGeneExRNA | 8
Inferred from Expression Pattern | biological_process | 8
Other direct assay | fission_yeast_phenotype | 8
microscopy evidence | gene_ex | 9
mutant phenotype evidence used in manual assertion | sequence | 10
Inferred from Experiment | sequence | 10
Inferred from Sequence or Structural Similarity | genome_org | 11
fusion protein localization evidence | PomGeneExProt | 11
in situ hybridization assay evidence | gene_ex | 14
western blot evidence used in manual assertion | PomGeneExRNA | 14
transcript expression level evidence | PomGeneExRNA | 16
microscopy evidence | PomGeneExProt | 19
reporter gene assay evidence | PomGeneExRNA | 19
curator inference used in manual assertion | PSI-MOD | 21
sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | fission_yeast_phenotype | 22
sequence similarity evidence | sequence | 25
Immunolocalization experiment data | fission_yeast_phenotype | 35
Inferred from Sequence or Structural Similarity | m_f_g | 41
Unknown | PSI-MOD | 43
Inferred from Genetic Interaction | cellular_component | 44
Particle size and count assay | fission_yeast_phenotype | 44
neural network method evidence used in manual assertion | PSI-MOD | 47
Inferred from Sequence Model | cellular_component | 56
Inferred from Physical Interaction | biological_process | 57
RNA protection assay evidence | PomGeneExRNA | 58
Inferred from Mutant Phenotype | cellular_component | 59
reverse transcription polymerase chain reaction transcription evidence | PomGeneExRNA | 60
Epitope-tagged protein immunolocalization experiment data | fission_yeast_phenotype | 61
Inferred from Sequence or Structural Similarity | warning | 65
Inferred from high throughput direct assay | biological_process | 68
experimental evidence used in manual assertion | PSI-MOD | 75
Chromatography evidence | fission_yeast_phenotype | 82
Plasmid maintenance assay evidence | fission_yeast_phenotype | 82
Non-traceable Author Statement | cellular_component | 91
Inferred from Sequence or Structural Similarity | PSI-MOD | 100
Inferred from Sequence Model | biological_process | 101
Non-traceable Author Statement | molecular_function | 103
Traceable Author Statement | cellular_component | 103
Western blot evidence | PomGeneExProt | 115
Northern assay evidence | fission_yeast_phenotype | 117
Inferred from Genetic Interaction | molecular_function | 122
Northern assay evidence | PomGeneExRNA | 125
reporter gene assay evidence | PomGeneExProt | 129
western blot evidence used in manual assertion | fission_yeast_phenotype | 147
Traceable Author Statement | molecular_function | 147
tryptic phosphopeptide mapping assay evidence used in automatic assertion | fission_yeast_phenotype | 149
quantitative PCR | PomGeneExRNA | 153
sequence similarity evidence used in manual assertion | sequence | 155
Traceable Author Statement | biological_process | 161
Inferred by Curator | molecular_function | 191
experimental evidence | PomGeneExRNA | 198
high throughput nucleotide sequencing assay evidence | fission_yeast_phenotype | 206
Inferred from Sequence or Structural Similarity | cellular_component | 224
ECO:0006068 | fission_yeast_phenotype | 229
Non-traceable Author Statement | biological_process | 253
Electrophoretic mobility shift assay data | fission_yeast_phenotype | 256
sequence similarity evidence used in manual assertion | PSI-MOD | 262
Inferred from Sequence or Structural Similarity | molecular_function | 276
Inferred from Physical Interaction | cellular_component | 294
Inferred from Electronic Annotation | cellular_component | 301
Inferred from Sequence or Structural Similarity | biological_process | 343
match to sequence model evidence used in manual assertion | sequence | 425
western blot evidence used in manual assertion | PomGeneExProt | 436
Inferred from Electronic Annotation | biological_process | 441
experimental phenotypic evidence | fission_yeast_phenotype | 493
Inferred from Genetic Interaction | biological_process | 534
Inferred by Curator | cellular_component | 562
Inferred from Experiment | cellular_component | 611
mass spectrometry evidence | PomGeneExProt | 614
Inferred from Direct Assay | biological_process | 649
microscopy evidence used in manual assertion | fission_yeast_phenotype | 659
Inferred from Sequence Orthology | molecular_function | 668
ribosome profiling evidence | PomGeneExRD | 731
Inferred from Experiment | biological_process | 778
Inferred from Sequence Orthology | cellular_component | 787
northern assay evidence used in manual assertion | PomGeneExRNA | 796
Inferred from Sequence Model | molecular_function | 894
Inferred by Curator | biological_process | 899
match to sequence model evidence | sequence | 941
Inferred from Mutant Phenotype | molecular_function | 1071
match to sequence model evidence used in manual assertion | PSI-MOD | 1119
Inferred from Experiment | molecular_function | 1156
Inferred from Sequence Orthology | biological_process | 1235
Substance quantification evidence | fission_yeast_phenotype | 1246
Co-immunoprecipitation experiment | fission_yeast_phenotype | 1273
differential hybridization evidence | PSI-MOD | 1287
quantitative PCR | fission_yeast_phenotype | 1343
Inferred from Electronic Annotation | molecular_function | 1524
Inferred from high throughput mutant phenotype | molecular_function | 1535
competitive growth assay evidence | fission_yeast_phenotype | 1667
Inferred from Biological aspect of Ancestor | cellular_component | 1811
high throughput evidence used in manual assertion | fission_yeast_phenotype | 1964
Inferred from Direct Assay | molecular_function | 2153
cell viability assay evidence | fission_yeast_phenotype | 2163
Flow cytometry data | fission_yeast_phenotype | 2204
Inferred from Physical Interaction | molecular_function | 2327
Inferred from Biological aspect of Ancestor | molecular_function | 2344
Inferred from Biological aspect of Ancestor | biological_process | 2362
Enzyme assay data | fission_yeast_phenotype | 2524
gel electrophoresis evidence | fission_yeast_phenotype | 2654
Chromatin immunoprecipitation experiment | fission_yeast_phenotype | 2686
Other | fission_yeast_phenotype | 2703
high throughput evidence used in manual assertion | PomGeneExProt | 2987
Inferred from Direct Assay | PSI-MOD | 3299
expression microarray evidence | PomGeneExRNA | 3614
reporter gene assay evidence | fission_yeast_phenotype | 3622
Inferred from Mutant Phenotype | biological_process | 3732
RNA-sequencing evidence | PomGeneExRNA | 3982
Inferred from high throughput direct assay | molecular_function | 4510
transcript expression level evidence | fission_yeast_phenotype | 5176
Western blot assay | fission_yeast_phenotype | 5180
Inferred from Direct Assay | cellular_component | 6210
Inferred from high throughput direct assay | cellular_component | 6644
high throughput evidence used in manual assertion | PSI-MOD | 6709
experimental evidence | PSI-MOD | 8138
mass spectrometry evidence | PSI-MOD | 8352
mass spectrometry evidence | gene_ex | 13682
experimental evidence | gene_ex | 19958
microscopy evidence | fission_yeast_phenotype | 40317
tryptic phosphopeptide mapping assay evidence used in automatic assertion | PSI-MOD | 45049
cell growth assay evidence | fission_yeast_phenotype | 117348
(149 rows)
annotation counts by evidence code and cv type, sorted by cv evidence code:
ev_code | cv_name | count
----------------------------------------------------------------------------------+--------------------------+--------
Chromatin immunoprecipitation experiment | fission_yeast_phenotype | 2686
Chromatography evidence | fission_yeast_phenotype | 82
Co-immunoprecipitation experiment | fission_yeast_phenotype | 1273
ECO:0000015 | sequence | 1
ECO:0006068 | fission_yeast_phenotype | 229
Electrophoretic mobility shift assay data | fission_yeast_phenotype | 256
Enzyme assay data | fission_yeast_phenotype | 2524
Epitope-tagged protein immunolocalization experiment data | fission_yeast_phenotype | 61
Flow cytometry data | fission_yeast_phenotype | 2204
Immunolocalization experiment data | fission_yeast_phenotype | 35
Inferred by Curator | biological_process | 899
Inferred by Curator | cellular_component | 562
Inferred by Curator | molecular_function | 191
Inferred from Biological aspect of Ancestor | biological_process | 2362
Inferred from Biological aspect of Ancestor | cellular_component | 1811
Inferred from Biological aspect of Ancestor | molecular_function | 2344
Inferred from Direct Assay | PSI-MOD | 3299
Inferred from Direct Assay | biological_process | 649
Inferred from Direct Assay | cellular_component | 6210
Inferred from Direct Assay | misc | 1
Inferred from Direct Assay | molecular_function | 2153
Inferred from Direct Assay | subunit_composition | 4
Inferred from Electronic Annotation | biological_process | 441
Inferred from Electronic Annotation | cellular_component | 301
Inferred from Electronic Annotation | molecular_function | 1524
Inferred from Experiment | biological_process | 778
Inferred from Experiment | cellular_component | 611
Inferred from Experiment | molecular_function | 1156
Inferred from Experiment | sequence | 10
Inferred from Expression Pattern | biological_process | 8
Inferred from Genetic Interaction | biological_process | 534
Inferred from Genetic Interaction | cellular_component | 44
Inferred from Genetic Interaction | molecular_function | 122
Inferred from Key Residues | molecular_function | 1
Inferred from Mutant Phenotype | PSI-MOD | 1
Inferred from Mutant Phenotype | biological_process | 3732
Inferred from Mutant Phenotype | cellular_component | 59
Inferred from Mutant Phenotype | misc | 4
Inferred from Mutant Phenotype | molecular_function | 1071
Inferred from Physical Interaction | biological_process | 57
Inferred from Physical Interaction | cellular_component | 294
Inferred from Physical Interaction | misc | 2
Inferred from Physical Interaction | molecular_function | 2327
Inferred from Sequence Model | PSI-MOD | 2
Inferred from Sequence Model | biological_process | 101
Inferred from Sequence Model | cellular_component | 56
Inferred from Sequence Model | molecular_function | 894
Inferred from Sequence Orthology | biological_process | 1235
Inferred from Sequence Orthology | cellular_component | 787
Inferred from Sequence Orthology | molecular_function | 668
Inferred from Sequence or Structural Similarity | PSI-MOD | 100
Inferred from Sequence or Structural Similarity | biological_process | 343
Inferred from Sequence or Structural Similarity | cellular_component | 224
Inferred from Sequence or Structural Similarity | genome_org | 11
Inferred from Sequence or Structural Similarity | m_f_g | 41
Inferred from Sequence or Structural Similarity | misc | 1
Inferred from Sequence or Structural Similarity | molecular_function | 276
Inferred from Sequence or Structural Similarity | pombase_family_or_domain | 6
Inferred from Sequence or Structural Similarity | subunit_composition | 1
Inferred from Sequence or Structural Similarity | warning | 65
Inferred from high throughput direct assay | biological_process | 68
Inferred from high throughput direct assay | cellular_component | 6644
Inferred from high throughput direct assay | molecular_function | 4510
Inferred from high throughput mutant phenotype | molecular_function | 1535
Non-traceable Author Statement | biological_process | 253
Non-traceable Author Statement | cellular_component | 91
Non-traceable Author Statement | complementation | 1
Non-traceable Author Statement | molecular_function | 103
Northern assay evidence | PomGeneExRNA | 125
Northern assay evidence | fission_yeast_phenotype | 117
Other | fission_yeast_phenotype | 2703
Other direct assay | fission_yeast_phenotype | 8
Particle size and count assay | fission_yeast_phenotype | 44
Plasmid maintenance assay evidence | fission_yeast_phenotype | 82
RNA detection assay evidence | gene_ex | 2
RNA protection assay evidence | PomGeneExRNA | 58
RNA-sequencing evidence | PomGeneExRNA | 3982
Substance quantification evidence | fission_yeast_phenotype | 1246
Traceable Author Statement | PSI-MOD | 1
Traceable Author Statement | biological_process | 161
Traceable Author Statement | cellular_component | 103
Traceable Author Statement | molecular_function | 147
Traceable Author Statement | pombase_family_or_domain | 5
Unknown | PSI-MOD | 43
Western blot assay | fission_yeast_phenotype | 5180
Western blot evidence | PomGeneExProt | 115
author statement supported by traceable reference used in manual assertion | sequence | 1
author statement without traceable support used in manual assertion | PSI-MOD | 1
cell growth assay evidence | fission_yeast_phenotype | 117348
cell viability assay evidence | fission_yeast_phenotype | 2163
combinatorial computational and experimental evidence used in manual assertion | PSI-MOD | 1
competitive growth assay evidence | fission_yeast_phenotype | 1667
curator inference used in manual assertion | PSI-MOD | 21
curator inference used in manual assertion | sequence | 6
differential hybridization evidence | PSI-MOD | 1287
differential hybridization evidence | PomGeneExRNA | 1
direct assay evidence used in manual assertion | sequence | 7
experimental evidence | PSI-MOD | 8138
experimental evidence | PomGeneExProt | 1
experimental evidence | PomGeneExRNA | 198
experimental evidence | gene_ex | 19958
experimental evidence used in manual assertion | PSI-MOD | 75
experimental evidence used in manual assertion | sequence | 4
experimental phenotypic evidence | fission_yeast_phenotype | 493
expression microarray evidence | PomGeneExRNA | 3614
fusion protein localization evidence | PomGeneExProt | 11
gel electrophoresis evidence | fission_yeast_phenotype | 2654
high throughput evidence used in manual assertion | PSI-MOD | 6709
high throughput evidence used in manual assertion | PomGeneExProt | 2987
high throughput evidence used in manual assertion | fission_yeast_phenotype | 1964
high throughput nucleotide sequencing assay evidence | fission_yeast_phenotype | 206
immunofluorescence evidence | PomGeneExProt | 6
in situ hybridization assay evidence | gene_ex | 14
in situ hybridization evidence used in manual assertion | PomGeneExRNA | 5
mass spectrometry evidence | PSI-MOD | 8352
mass spectrometry evidence | PomGeneExProt | 614
mass spectrometry evidence | gene_ex | 13682
match to sequence model evidence | sequence | 941
match to sequence model evidence used in manual assertion | PSI-MOD | 1119
match to sequence model evidence used in manual assertion | sequence | 425
microscopy evidence | PomGeneExProt | 19
microscopy evidence | fission_yeast_phenotype | 40317
microscopy evidence | gene_ex | 9
microscopy evidence used in manual assertion | fission_yeast_phenotype | 659
mutant phenotype evidence used in manual assertion | sequence | 10
neural network method evidence used in manual assertion | PSI-MOD | 47
northern assay evidence used in manual assertion | PomGeneExProt | 5
northern assay evidence used in manual assertion | PomGeneExRNA | 796
protein expression level evidence based on western blot used in manual assertion | gene_ex | 2
quantitative PCR | PomGeneExRNA | 153
quantitative PCR | fission_yeast_phenotype | 1343
quantitative polymerase chain reaction evidence used in manual assertion | PomGeneExRNA | 8
reporter gene assay evidence | PomGeneExProt | 129
reporter gene assay evidence | PomGeneExRNA | 19
reporter gene assay evidence | fission_yeast_phenotype | 3622
reverse transcription polymerase chain reaction transcription evidence | PomGeneExRNA | 60
ribosome profiling evidence | PomGeneExRD | 731
sequence similarity evidence | sequence | 25
sequence similarity evidence used in manual assertion | PSI-MOD | 262
sequence similarity evidence used in manual assertion | sequence | 155
sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | PomGeneExProt | 2
sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence | fission_yeast_phenotype | 22
transcript expression level evidence | PomGeneExRNA | 16
transcript expression level evidence | fission_yeast_phenotype | 5176
tryptic phosphopeptide mapping assay evidence used in automatic assertion | PSI-MOD | 45049
tryptic phosphopeptide mapping assay evidence used in automatic assertion | fission_yeast_phenotype | 149
western blot evidence used in manual assertion | PomGeneExProt | 436
western blot evidence used in manual assertion | PomGeneExRNA | 14
western blot evidence used in manual assertion | fission_yeast_phenotype | 147
(149 rows)
total:
count
--------
477987
(1 row)
counts of annotation from Canto, by type:
count | cv_name
-------+------------------------------------
10 | sequence
113 | PomGeneExProt
494 | PomGeneExRNA
2386 | PSI-MOD
4827 | biological_process
5322 | molecular_function
6217 | cellular_component
44073 | PomBase annotation extension terms
79908 | fission_yeast_phenotype
(9 rows)
total
-------
99277
(1 row)