# terms

id: PBO:0081220
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ZMPSTE24 divergent transcript","termid":"PBO:0081220"}


id: GO:0047912
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: alpha-D-galacturonate + ATP = 1-phospho-alpha-D-galacturonate + ADP + 2 H+.","definition_xrefs":["EC:2.7.1.44","RHEA:12965"],"direct_ancestors":[{"relation_name":"is_a","term_name":"kinase activity","termid":"GO:0016301"},{"relation_name":"is_a","term_name":"phosphotransferase activity, alcohol group as acceptor","termid":"GO:0016773"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016301"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016740"}],"interesting_parent_ids":["GO:0016301","GO:0003824","GO:0016740","GO:0003674"],"is_obsolete":false,"name":"galacturonokinase activity","secondary_identifiers":["KEGG_REACTION:R01980","MetaCyc:GALACTURONOKINASE-RXN"],"synonyms":[{"name":"ATP:D-galacturonate 1-phosphotransferase activity","type":"related"},{"name":"galacturonokinase (phosphorylating) D-galacturonic acid kinase activity","type":"related"}],"termid":"GO:0047912"}


id: GO:1904903
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The disaggregation of an ESCRT III complex into its constituent components.","definition_xrefs":["GOC:PARL","GOC:TermGenie","PMID:20588296","GO_REF:0000079","GOC:pad"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ESCRT complex disassembly","termid":"GO:1904896"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"ESCRT III complex disassembly","termid":"GO:1904903"}


id: GO:0045866
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that activates or increases the frequency, rate or extent of genetic recombination within the DNA of the genes coding for ribosomal RNA.","definition_xrefs":["GOC:go_curators","ISBN:0198506732"],"gene_count":0,"genotype_count":0,"name":"obsolete positive regulation of recombination within rDNA repeats (obsolete GO:0045866)","synonyms":[{"name":"positive regulation of recombination within rDNA repeats","type":"exact"}],"termid":"GO:0045866"}


id: GO:0099008
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The entry of a symbiont into the cytoplasm of a host cell, following fusion with the outer membrane, via permeabilization of the plasma (inner) membrane. This process mediates the entry of some non-enveloped viruses into prokaryotic cells. In the case of some double stranded RNA viruses of prokaryotes this occurs via interaction of a membrane-interacting component of the capsid, leading to depolarization and permeabilization of the plasma membrane.","definition_xrefs":["PMID:20427561","PMID:15795287"],"direct_ancestors":[{"relation_name":"is_a","term_name":"symbiont entry into host cell via permeabilization of host membrane","termid":"GO:0140267"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"symbiont entry into host cell via permeabilization of inner membrane","synonyms":[{"name":"viral entry via permeabilization of inner membrane","type":"narrow"}],"termid":"GO:0099008"}


id: PBO:0002246
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"3-hydroxyacyl-CoA dehydrogenase (predicted)","termid":"PBO:0002246"}


id: MOD:00703
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively replaces a hydrogen atom with a group derived from an isoprene polymer, such as a geranyl (C10), farnesyl (C15) or geranylgeranyl (C20) group.","definition_xrefs":["PubMed:18688235"],"direct_ancestors":[{"relation_name":"is_a","term_name":"alkylated residue","termid":"MOD:00001"},{"relation_name":"is_a","term_name":"lipoconjugated residue","termid":"MOD:01155"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"isoprenylated residue","synonyms":[{"name":"IpRes","type":"exact"}],"termid":"MOD:00703"}


id: PBO:0003857
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"actin-like protein Arp4","termid":"PBO:0003857"}


id: MOD:01429
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that forms an adduct with a (15)N labeled compound used as a reagent.","definition_xrefs":["PubMed:18688235"],"direct_ancestors":[{"relation_name":"is_a","term_name":"isotope tagged reagent derivatized residue","termid":"MOD:01426"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"(15)N isotope tagged reagent","termid":"MOD:01429"}


id: PBO:0004898
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Npr2/3 complex subunit Npr3 (predicted)","termid":"PBO:0004898"}


id: FYPO:0002435
data:
  {"alleles_by_uniquename":{"SJAG_04703:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_04703","name":"for3delta","uniquename":"SJAG_04703:allele-1"}},"annotation_feature_type":"genotype","cv_annotations":{"single_locus_phenotype":[{"annotations":[114208],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0003315"}]},"cv_name":"fission_yeast_phenotype","definition":"A physical cellular phenotype observed in the vegetative growth phase of the life cycle in which the amount, distribution, or morphology of actin cables is abnormal. Actin cables are parallel actin filament bundles nucleated by formin, and are the most common form of actin filament bundles found in yeasts.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal actin cytoskeleton during vegetative growth","termid":"FYPO:0002398"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04703":null},"genotype_count":1,"genotypes_by_uniquename":{"for3delta":{"display_name":"for3delta","display_uniquename":"for3delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04703:allele-1","expression":"Null"}]}]}},"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"output_of","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0004803"},{"rel_name":"output_of","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0000002","FYPO:0005447","FYPO:0001985","FYPO:0004803"],"is_obsolete":false,"name":"abnormal actin cables","references_by_uniquename":{"PMID:30726171":null},"single_locus_annotated_genes":["SJAG_04703"],"single_locus_genotype_uniquenames":["for3delta"],"synonyms":[{"name":"abnormal actin cables during mitotic cell cycle","type":"related"},{"name":"abnormal actin cables during vegetative growth","type":"exact"},{"name":"abnormal formin-nucleated actin cables","type":"exact"}],"termid":"FYPO:0002435","terms_by_termid":{"FYPO:0003315":null}}


id: PBO:0062427
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 7 subfamily E member 87 pseudogene","termid":"PBO:0062427"}


id: GO:0033985
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The volume enclosed by the membranes of an acidocalcisome.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"intracellular organelle lumen","termid":"GO:0070013"},{"relation_name":"part_of","term_name":"acidocalcisome","termid":"GO:0020022"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005737"}],"interesting_parent_ids":["GO:0005737","GO:0005575"],"is_obsolete":false,"name":"acidocalcisome lumen","termid":"GO:0033985"}


id: PBO:0054604
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2009","termid":"PBO:0054604"}


id: PBO:0070350
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNY4 pseudogene 23","termid":"PBO:0070350"}


id: PBO:0053280
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"leukocyte immunoglobulin-like receptor pseudogene 1","termid":"PBO:0053280"}


id: GO:0140113
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The assembly and secretion of a set of components to form an extracellular microvesicule, a membrane-bounded vesicle that ranges in size 100 nm to 1 micron in size) and exits the cell by budding.","definition_xrefs":["PMID:28736435"],"direct_ancestors":[{"relation_name":"is_a","term_name":"extracellular vesicle biogenesis","termid":"GO:0140112"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044085"}],"interesting_parent_ids":["GO:0008150","GO:0044085"],"is_obsolete":false,"name":"extracellular microvesicle biogenesis","synonyms":[{"name":"extracellular microvesicle assembly","type":"related"}],"termid":"GO:0140113"}


id: PBO:0066592
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ras homolog family member G","termid":"PBO:0066592"}


id: PBO:0054823
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2236","termid":"PBO:0054823"}


id: PBO:0075519
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"speedy/RINGO cell cycle regulator family member C","termid":"PBO:0075519"}


id: PBO:0083842
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Exocyst subunit with dual roles in exocytosis and spliceosome assembly; subunit of the the exocyst complex which mediates polarized targeting and tethering of post-Golgi secretory vesicles to active sites of exocytosis at the plasma membrane (PM) prior to SNARE-mediated fusion; required for exocyst assembly and targeting the complex to specific sites on the bud tip PM; associates the U1 snRNP; role in pre-mRNA splicing and prespliceosome formation; possible Cdc28 substrate","termid":"PBO:0083842"}


id: GO:1905629
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of serotonin biosynthetic process.","definition_xrefs":["GOC:pad","GOC:PARL","GOC:TermGenie","GO_REF:0000058","PMID:25642596"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of cellular biosynthetic process","termid":"GO:0031328"},{"relation_name":"is_a","term_name":"positive regulation of nitrogen compound metabolic process","termid":"GO:0051173"},{"relation_name":"is_a","term_name":"regulation of serotonin biosynthetic process","termid":"GO:1905627"},{"relation_name":"positively_regulates","term_name":"serotonin biosynthetic process","termid":"GO:0042427"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of serotonin biosynthetic process","synonyms":[{"name":"activation of serotonin anabolism","type":"narrow"},{"name":"activation of serotonin biosynthesis","type":"narrow"},{"name":"activation of serotonin biosynthetic process","type":"narrow"},{"name":"activation of serotonin formation","type":"narrow"},{"name":"activation of serotonin synthesis","type":"narrow"},{"name":"positive regulation of serotonin anabolism","type":"exact"},{"name":"positive regulation of serotonin biosynthesis","type":"exact"},{"name":"positive regulation of serotonin formation","type":"exact"},{"name":"positive regulation of serotonin synthesis","type":"exact"},{"name":"up regulation of serotonin anabolism","type":"exact"},{"name":"up regulation of serotonin biosynthesis","type":"exact"},{"name":"up regulation of serotonin biosynthetic process","type":"exact"},{"name":"up regulation of serotonin formation","type":"exact"},{"name":"up regulation of serotonin synthesis","type":"exact"},{"name":"up-regulation of serotonin anabolism","type":"exact"},{"name":"up-regulation of serotonin biosynthesis","type":"exact"},{"name":"up-regulation of serotonin biosynthetic process","type":"exact"},{"name":"up-regulation of serotonin formation","type":"exact"},{"name":"up-regulation of serotonin synthesis","type":"exact"},{"name":"upregulation of serotonin anabolism","type":"exact"},{"name":"upregulation of serotonin biosynthesis","type":"exact"},{"name":"upregulation of serotonin biosynthetic process","type":"exact"},{"name":"upregulation of serotonin formation","type":"exact"},{"name":"upregulation of serotonin synthesis","type":"exact"}],"termid":"GO:1905629"}


id: PBO:0055893
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"leucine rich repeat containing 14","termid":"PBO:0055893"}


id: GO:0002932
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of a tendon sheath over time, from its formation to the mature structure. A tendon sheath is a layer of membrane around a tendon. It permits the tendon to move.","definition_xrefs":["PMID:20696843"],"direct_ancestors":[{"relation_name":"is_a","term_name":"connective tissue development","termid":"GO:0061448"},{"relation_name":"part_of","term_name":"tendon development","termid":"GO:0035989"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"tendon sheath development","termid":"GO:0002932"}


id: GO:0006042
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of glucosamine (2-amino-2-deoxyglucopyranose), an aminodeoxysugar that occurs in combined form in chitin.","definition_xrefs":["ISBN:0198506732","GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"glucosamine metabolic process","termid":"GO:0006041"},{"relation_name":"is_a","term_name":"glucosamine-containing compound biosynthetic process","termid":"GO:1901073"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"glucosamine biosynthetic process","synonyms":[{"name":"chitosamine biosynthesis","type":"exact"},{"name":"chitosamine biosynthetic process","type":"exact"},{"name":"glucosamine anabolism","type":"exact"},{"name":"glucosamine biosynthesis","type":"exact"},{"name":"glucosamine formation","type":"exact"},{"name":"glucosamine synthesis","type":"exact"}],"termid":"GO:0006042"}


id: PBO:0050820
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"hyaluronidase 6, pseudogene","termid":"PBO:0050820"}


id: PBO:0051736
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"INTS6 antisense RNA 1","termid":"PBO:0051736"}


id: GO:2000170
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of peptidyl-cysteine S-nitrosylation.","definition_xrefs":["GOC:obol"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of protein modification process","termid":"GO:0031401"},{"relation_name":"is_a","term_name":"regulation of peptidyl-cysteine S-nitrosylation","termid":"GO:2000169"},{"relation_name":"positively_regulates","term_name":"peptidyl-cysteine S-nitrosylation","termid":"GO:0018119"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of peptidyl-cysteine S-nitrosylation","termid":"GO:2000170"}


id: GO:1990884
data:
  {"annotated_genes":["SJAG_01638","SJAG_01877"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[72114],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1904812"},{"annotations":[88255,102703],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0051391"}]},"cv_name":"biological_process","definition":"The posttranscriptional addition of one or more acetyl groups to specific residues in an RNA molecule.","definition_xrefs":["PMID:25402480"],"direct_ancestors":[{"relation_name":"is_a","term_name":"RNA modification","termid":"GO:0009451"}],"gene_count":2,"genes_by_uniquename":{"SJAG_01638":null,"SJAG_01877":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"RNA acetylation","references_by_uniquename":{"GO_REF:0000107":null,"PMID:21873635":null},"termid":"GO:1990884","terms_by_termid":{"GO:0051391":null,"GO:1904812":null}}


id: GO:1903114
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A protein complex which is capable of silver ion transmembrane transporter activity.","definition_xrefs":["GOC:bhm","PMID:11283292","GO_REF:0000088","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"transmembrane transporter complex","termid":"GO:1902495"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575","GO:0032991"],"is_obsolete":false,"name":"silver ion transmembrane transporter complex","termid":"GO:1903114"}


id: PBO:0036129
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_histone_H3-K9_dimethylation_at_centromere_outer_repeat_during_vegetative_growth","termid":"PBO:0036129"}


id: PBO:0061402
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"natriuretic peptide receptor 3","termid":"PBO:0061402"}


id: GO:0098815
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of excitatory postsynaptic potential (EPSP). EPSP is a process that leads to a temporary increase in postsynaptic potential due to the flow of positively charged ions into the postsynaptic cell. The flow of ions that causes an EPSP is an excitatory postsynaptic current (EPSC) and makes it easier for the neuron to fire an action potential.","definition_xrefs":["GOC:dos"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of signal transduction","termid":"GO:0009966"},{"relation_name":"is_a","term_name":"regulation of nervous system process","termid":"GO:0031644"},{"relation_name":"is_a","term_name":"regulation of membrane potential","termid":"GO:0042391"},{"relation_name":"is_a","term_name":"modulation of chemical synaptic transmission","termid":"GO:0050804"},{"relation_name":"regulates","term_name":"excitatory postsynaptic potential","termid":"GO:0060079"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"modulation of excitatory postsynaptic potential","termid":"GO:0098815"}


id: GO:0015044
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: reduced rubredoxin + NAD+ = oxidized rubredoxin + NADH + H+.","definition_xrefs":["RHEA:18597"],"direct_ancestors":[{"relation_name":"is_a","term_name":"rubredoxin-NAD(P)+ reductase activity","termid":"GO:0015045"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016491","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"rubredoxin-NAD+ reductase activity","secondary_identifiers":["EC:1.18.1.1","MetaCyc:RUBREDOXIN--NAD+-REDUCTASE-RXN"],"synonyms":[{"name":"DPNH-rubredoxin reductase activity","type":"related"},{"name":"NADH--rubredoxin oxidoreductase activity","type":"related"},{"name":"NADH--rubredoxin reductase activity","type":"related"},{"name":"NADH:rubredoxin oxidoreductase activity","type":"related"},{"name":"NADH:rubredoxin reductase activity","type":"exact"},{"name":"dihydronicotinamide adenine dinucleotide--rubredoxin reductase activity","type":"related"},{"name":"reduced nicotinamide adenine dinucleotide--rubredoxin reductase activity","type":"related"},{"name":"rubredoxin--NAD reductase activity","type":"related"},{"name":"rubredoxin--nicotinamide adenine dinucleotide reductase activity","type":"related"},{"name":"rubredoxin:NAD+ oxidoreductase activity","type":"related"}],"termid":"GO:0015044"}


id: GO:1903298
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of hypoxia-induced intrinsic apoptotic signaling pathway.","definition_xrefs":["GOC:PARL","GOC:bf","PMID:24553947","GO_REF:0000058","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of cellular response to hypoxia","termid":"GO:1900038"},{"relation_name":"is_a","term_name":"regulation of hypoxia-induced intrinsic apoptotic signaling pathway","termid":"GO:1903297"},{"relation_name":"is_a","term_name":"negative regulation of intrinsic apoptotic signaling pathway","termid":"GO:2001243"},{"relation_name":"negatively_regulates","term_name":"intrinsic apoptotic signaling pathway in response to hypoxia","termid":"GO:1990144"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0023052"},{"rel_name":"negatively_regulates","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"negative regulation of hypoxia-induced intrinsic apoptotic signaling pathway","synonyms":[{"name":"down regulation of intrinsic apoptotic signaling pathway in response to hypoxia","type":"exact"},{"name":"down-regulation of intrinsic apoptotic signaling pathway in response to hypoxia","type":"exact"},{"name":"downregulation of intrinsic apoptotic signaling pathway in response to hypoxia","type":"exact"},{"name":"inhibition of intrinsic apoptotic signaling pathway in response to hypoxia","type":"narrow"},{"name":"negative regulation of hypoxia-induced apoptosis","type":"related"},{"name":"negative regulation of hypoxic stress-induced intrinsic apoptotic signaling pathway","type":"exact"},{"name":"negative regulation of intrinsic apoptotic signaling pathway in response to hypoxia","type":"exact"},{"name":"protection against hypoxia-induced apoptosis","type":"related"}],"termid":"GO:1903298"}


id: PBO:0068824
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 62, pseudogene","termid":"PBO:0068824"}


id: PBO:0046236
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"elongin C pseudogene 30","termid":"PBO:0046236"}


id: PBO:0004024
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SUMO deconjugating enzyme Ulp1","termid":"PBO:0004024"}


id: PBO:0051442
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"immunoglobulin lambda variable 3-27","termid":"PBO:0051442"}


id: PBO:0090673
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosome preservation factor, Stm1 homolog Oga1","termid":"PBO:0090673"}


id: PBO:0026769
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_protein_localization_to_cell_surface","termid":"PBO:0026769"}


id: GO:0098920
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Cell-cell signaling from postsynapse to presynapse, across the synaptic cleft, mediated by a lipid ligand.","definition_xrefs":["GOC:dos"],"direct_ancestors":[{"relation_name":"is_a","term_name":"retrograde trans-synaptic signaling","termid":"GO:0098917"},{"relation_name":"is_a","term_name":"trans-synaptic signaling by lipid","termid":"GO:0099541"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"retrograde trans-synaptic signaling by lipid","termid":"GO:0098920"}


id: SO:0001982
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A plant regulatory promoter motif, composed of a highly conserved hexamer GATAAG (I-box core).","definition_xrefs":["PMID:2902624","PMID:2347304","SO:ml"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulatory_promoter_element","termid":"SO:0001678"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"I-box","synonyms":[{"name":"I-box promoter motif","type":"exact"}],"termid":"SO:0001982"}


id: PBO:0030164
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_cellular_trehalose_level_during_sporulation","termid":"PBO:0030164"}


id: GO:0018478
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 3-oxopropanoate + CoA + NAD(P)+ = acetyl-CoA + CO2 + NAD(P)H.","definition_xrefs":["EC:1.2.1.18"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor","termid":"GO:0016620"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0016491","GO:0003824"],"is_obsolete":false,"name":"malonate-semialdehyde dehydrogenase (acetylating) activity","secondary_identifiers":["MetaCyc:RXN-9958"],"synonyms":[{"name":"3-oxopropanoate:NAD(P)+ oxidoreductase (decarboxylating, CoA-acetylating)","type":"related"},{"name":"malonic semialdehyde oxidative decarboxylase activity","type":"exact"}],"termid":"GO:0018478"}


id: FYPO:0004081
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to chromatin at tRNA genes is decreased.","definition_xrefs":["PMID:24945319","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased protein localization to chromatin at ncRNA genes","termid":"FYPO:0004346"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0000138","FYPO:0005447","FYPO:0000002","FYPO:0001320","FYPO:0001985"],"is_obsolete":false,"name":"decreased protein localization to chromatin at tRNA genes","synonyms":[{"name":"decreased protein localisation to chromatin at tRNA genes","type":"exact"},{"name":"decreased protein localization to chromatin at tRNA genes during mitotic cell cycle","type":"related"},{"name":"decreased protein localization to chromatin at tRNA genes during vegetative growth","type":"exact"},{"name":"decreased protein localization to chromatin at transfer RNA genes","type":"exact"},{"name":"reduced protein localization to chromatin at tRNA genes","type":"exact"}],"termid":"FYPO:0004081"}


id: GO:0061411
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that increases the frequency, rate or extent of transcription from an RNA polymerase II promoter as a result of a cold stimulus, a temperature stimulus below the optimal temperature for that organism.","definition_xrefs":["GOC:dph"],"gene_count":0,"genotype_count":0,"name":"obsolete positive regulation of transcription from RNA polymerase II promoter in response to cold (obsolete GO:0061411)","termid":"GO:0061411"}


id: PBO:0083518
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Dubious open reading frame; unlikely to encode a functional protein, based on available experimental and comparative sequence data; partially overlaps the verified ORF MRM1/YOR201c","termid":"PBO:0083518"}


id: GO:0070978
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Cellular protein complex assembly that results in the formation of a voltage-gated calcium channel complex.","definition_xrefs":["GOC:mh"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein-containing complex assembly","termid":"GO:0065003"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0044085"},{"rel_name":"is_a","termid":"GO:0065003"}],"interesting_parent_ids":["GO:0044085","GO:0065003","GO:0008150"],"is_obsolete":false,"name":"voltage-gated calcium channel complex assembly","termid":"GO:0070978"}


id: GO:0005024
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Combining with a transforming growth factor beta (TGFbeta) and transmitting the signal from one side of the membrane to the other to initiate a change in cell activity by catalysis of the reaction: ATP protein serine = ADP + protein serine phosphate, and ATP + protein threonine = ADP + protein threonine phosphate.","definition_xrefs":["GOC:signaling","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"transmembrane receptor protein serine/threonine kinase activity","termid":"GO:0004675"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0140096"},{"rel_name":"is_a","termid":"GO:0038023"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0004672"},{"rel_name":"is_a","termid":"GO:0016301"}],"interesting_parent_ids":["GO:0016301","GO:0038023","GO:0003824","GO:0140096","GO:0004672","GO:0003674","GO:0016740"],"is_obsolete":false,"name":"transforming growth factor beta receptor activity","synonyms":[{"name":"TGF-beta receptor activity","type":"exact"},{"name":"TGFbeta receptor activity","type":"exact"},{"name":"TGFbeta-activated receptor activity","type":"exact"},{"name":"TGFbetaR","type":"exact"},{"name":"transforming growth factor beta-activated receptor activity","type":"exact"}],"termid":"GO:0005024"}


id: PR:G2TRT3
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- tam14 gene.","definition_xrefs":["PRO:DNx","UniProtKB:G2TRT3"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protein tam14 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC330.20","synonyms":[{"name":"Spom972h-tam14","type":"exact"},{"name":"transcripts altered in meiosis protein 14 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:G2TRT3"}


id: MOD:01641
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively removes or replaces an L-leucine.","definition_xrefs":["PubMed:18688235"],"direct_ancestors":[{"relation_name":"is_a","term_name":"modified L-leucine residue","termid":"MOD:00911"},{"relation_name":"is_a","term_name":"natural, standard, encoded residue removal","termid":"MOD:01651"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"L-leucine removal","termid":"MOD:01641"}


id: GO:0008261
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Combining with allatostatin to initiate a change in cell activity.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"G protein-coupled peptide receptor activity","termid":"GO:0008528"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0038023"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0038023"],"is_obsolete":false,"name":"allatostatin receptor activity","termid":"GO:0008261"}


id: PBO:0083318
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Dubious open reading frame; unlikely to encode a functional protein, based on available experimental and comparative sequence data; overlaps ORF HXK1/YFR053C","termid":"PBO:0083318"}


id: GO:0102088
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 4-hydroxybenzoic acid + L-glutamate + ATP = H+ + N-(4-hydroxybenzoyl)-L-glutamate + AMP + diphosphoric acid.","definition_xrefs":["GOC:pz","EC:6.3.-.-"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ligase activity, forming carbon-nitrogen bonds","termid":"GO:0016879"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016874"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016874"],"is_obsolete":false,"name":"N-(4-hydroxybenzoyl)-L-glutamate synthetase activity","secondary_identifiers":["MetaCyc:RXN-10887"],"termid":"GO:0102088"}


id: PR:O59715
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- dsd1 gene.","definition_xrefs":["PRO:DNx","UniProtKB:O59715"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sphingolipid delta(4)-desaturase (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC3B8.07c","synonyms":[{"name":"Spom972h-dsd1","type":"exact"},{"name":"delta 4-(E)-sphingolipid desaturase (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"dihydroceramide desaturase (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:O59715"}


id: SO:0001209
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"An EST read from the 3' end of a transcript. They are more likely to fall within non-coding, or untranslated regions(UTRs).","direct_ancestors":[{"relation_name":"is_a","term_name":"EST","termid":"SO:0000345"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"three_prime_EST","synonyms":[{"name":"3' EST","type":"exact"},{"name":"three prime EST","type":"exact"}],"termid":"SO:0001209"}


id: GO:1903078
data:
  {"annotated_genes":["SJAG_00030"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[100088],"is_not":false,"summary":null,"term":"GO:1903078"}]},"cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of protein localization to plasma membrane.","definition_xrefs":["GO_REF:0000058","GOC:BHF","GOC:rl","GOC:TermGenie","PMID:11602640"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of protein localization to plasma membrane","termid":"GO:1903076"},{"relation_name":"is_a","term_name":"positive regulation of protein localization to cell periphery","termid":"GO:1904377"},{"relation_name":"is_a","term_name":"positive regulation of protein localization to membrane","termid":"GO:1905477"},{"relation_name":"positively_regulates","term_name":"protein localization to plasma membrane","termid":"GO:0072659"}],"gene_count":1,"genes_by_uniquename":{"SJAG_00030":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of protein localization to plasma membrane","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["GO:1905965","GO:0090004"],"synonyms":[{"name":"activation of protein localisation in plasma membrane","type":"narrow"},{"name":"activation of protein localization in plasma membrane","type":"narrow"},{"name":"activation of protein localization to plasma membrane","type":"narrow"},{"name":"activation of protein targeting to plasma membrane","type":"narrow"},{"name":"activation of protein-plasma membrane targeting","type":"narrow"},{"name":"positive regulation of establishment of protein localisation in plasma membrane","type":"related"},{"name":"positive regulation of establishment of protein localization to plasma membrane","type":"related"},{"name":"positive regulation of protein localisation in plasma membrane","type":"exact"},{"name":"positive regulation of protein localization in plasma membrane","type":"exact"},{"name":"positive regulation of protein targeting to plasma membrane","type":"related"},{"name":"positive regulation of protein-plasma membrane targeting","type":"related"},{"name":"up regulation of protein localisation in plasma membrane","type":"exact"},{"name":"up regulation of protein localization in plasma membrane","type":"exact"},{"name":"up regulation of protein localization to plasma membrane","type":"exact"},{"name":"up regulation of protein targeting to plasma membrane","type":"related"},{"name":"up regulation of protein-plasma membrane targeting","type":"related"},{"name":"up-regulation of protein localisation in plasma membrane","type":"exact"},{"name":"up-regulation of protein localization in plasma membrane","type":"exact"},{"name":"up-regulation of protein localization to plasma membrane","type":"exact"},{"name":"up-regulation of protein targeting to plasma membrane","type":"related"},{"name":"up-regulation of protein-plasma membrane targeting","type":"related"},{"name":"upregulation of protein localisation in plasma membrane","type":"exact"},{"name":"upregulation of protein localization in plasma membrane","type":"exact"},{"name":"upregulation of protein localization to plasma membrane","type":"exact"},{"name":"upregulation of protein targeting to plasma membrane","type":"related"},{"name":"upregulation of protein-plasma membrane targeting","type":"related"}],"termid":"GO:1903078","terms_by_termid":{"GO:1903078":null}}


id: PATO:0001999
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"The bearer of this quality has_part < n of the indicated entity type, where n is the normal amount for a comparable organism. Note that the bearer of the quality is the whole, not the part. Formally: If a bearer entity e has fewer parts of type X at time t, then the number of instances x of X at t such that x part_of e is < n, where n is either the normal number for comparable entities, or n is stated explicitly. This case includes the limit case, where the bearer lacks all parts of the specified type.","definition_xrefs":["PATOC:CJM"],"direct_ancestors":[{"relation_name":"is_a","term_name":"altered number of","termid":"PATO:0002083"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"lacks parts or has fewer parts of type","synonyms":[{"name":"loss of","type":"exact"}],"termid":"PATO:0001999"}


id: GO:1990441
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that stops, prevents, or reduces the frequency, rate or extent of transcription from an RNA polymerase II promoter as a result of an endoplasmic reticulum stress.","definition_xrefs":["GOC:bf","GOC:PARL","PMID:21113145"],"gene_count":0,"genotype_count":0,"name":"obsolete negative regulation of transcription from RNA polymerase II promoter in response to endoplasmic reticulum stress (obsolete GO:1990441)","synonyms":[{"name":"ER stress-induced negative regulation of transcription from RNA polymerase II promoter","type":"exact"},{"name":"down regulation of transcription from RNA polymerase II promoter in response to endoplasmic reticulum stress","type":"exact"},{"name":"down-regulation of transcription from RNA polymerase II promoter in response to endoplasmic reticulum stress","type":"exact"},{"name":"inhibition of transcription from RNA polymerase II promoter in response to endoplasmic reticulum stress","type":"exact"},{"name":"negative regulation of transcription from RNA polymerase II promoter in response to ER stress","type":"exact"},{"name":"reduction of transcription from RNA polymerase II promoter under ER stress","type":"exact"},{"name":"repression of transcription from RNA polymerase II promoter under ER stress","type":"exact"},{"name":"suppression of transcription from RNA polymerase II promoter under ER stress","type":"exact"}],"termid":"GO:1990441"}


id: PBO:0081819
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein 736 pseudogene 12, Y-linked","termid":"PBO:0081819"}


id: PBO:0045886
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"EEF1E1-BLOC1S5 readthrough (NMD candidate)","termid":"PBO:0045886"}


id: GO:1900205
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any apoptotic process that is involved in metanephric nephron tubule development.","definition_xrefs":["GOC:yaf","PMID:17314325","GOC:mtg_kidney_jan10","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"apoptotic process involved in development","termid":"GO:1902742"},{"relation_name":"part_of","term_name":"metanephric nephron tubule development","termid":"GO:0072234"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"apoptotic process involved in metanephric nephron tubule development","synonyms":[{"name":"apoptosis of metanephric nephron tubule development","type":"narrow"},{"name":"apoptotic cell death of metanephric nephron tubule development","type":"exact"},{"name":"apoptotic process of metanephric nephron tubule development","type":"exact"},{"name":"apoptotic program of metanephric nephron tubule development","type":"narrow"},{"name":"apoptotic programmed cell death of metanephric nephron tubule development","type":"exact"},{"name":"programmed cell death by apoptosis of metanephric nephron tubule development","type":"exact"},{"name":"signaling (initiator) caspase activity of metanephric nephron tubule development","type":"related"},{"name":"type I programmed cell death of metanephric nephron tubule development","type":"narrow"}],"termid":"GO:1900205"}


id: PBO:0043703
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cytochrome c oxidase subunit 6A1","termid":"PBO:0043703"}


id: MOD:01965
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-lysine residue to 2xC(13),3x(2)H labeled N6-acetyl-L-lysine.","definition_xrefs":["PubMed:18688235"],"direct_ancestors":[{"relation_name":"is_a","term_name":"N6-acetyl-L-lysine","termid":"MOD:00064"},{"relation_name":"is_a","term_name":"(13)C isotope tagged reagent","termid":"MOD:01428"},{"relation_name":"is_a","term_name":"(2)H deuterium tagged reagent","termid":"MOD:01431"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"2xC(13),3x(2)H labeled N6-acetyl-L-lysine","synonyms":[{"name":"Acetate labeling reagent (K) (heavy form, +5amu)","type":"exact"},{"name":"COFRADIC heavy acetyl 13C2 2H3","type":"exact"}],"termid":"MOD:01965"}


id: PBO:0073113
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"short chain dehydrogenase/reductase family 42E, member 1 pseudogene 1","termid":"PBO:0073113"}


id: PBO:0004366
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase family or domain","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PKC subfamily","termid":"PBO:0004366"}


id: PBO:0045033
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DISC1 intronic transcript 1","termid":"PBO:0045033"}


id: PBO:0018061
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"methylthioribose-1-phosphate isomerase Mri1 (predicted)","termid":"PBO:0018061"}


id: PBO:0066316
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA binding protein, mRNA processing factor 2","termid":"PBO:0066316"}


id: PBO:0067740
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 5S ribosomal pseudogene 39","termid":"PBO:0067740"}


id: PBO:0029600
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_sodium:hydrogen_antiporter_activity","termid":"PBO:0029600"}


id: PBO:0071810
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein S2 pseudogene 5","termid":"PBO:0071810"}


id: SO:0001148
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"Site which has been experimentally altered.","definition_xrefs":["UniProt:curation_manual","EBIBS:GAR"],"direct_ancestors":[{"relation_name":"is_a","term_name":"polypeptide_variation_site","termid":"SO:0001146"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"SO:0000839"}],"interesting_parent_ids":["SO:0000839"],"is_obsolete":false,"name":"mutated_variant_site","secondary_identifiers":["BS:00036"],"synonyms":[{"name":"mutagen","type":"exact"},{"name":"mutagenesis","type":"exact"},{"name":"mutated_site","type":"exact"}],"termid":"SO:0001148"}


id: GO:0031685
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to an adenosine receptor.","definition_xrefs":["GOC:mah","GOC:nln"],"direct_ancestors":[{"relation_name":"is_a","term_name":"G protein-coupled receptor binding","termid":"GO:0001664"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005515"},{"rel_name":"is_a","termid":"GO:0005488"}],"interesting_parent_ids":["GO:0005515","GO:0005488","GO:0003674"],"is_obsolete":false,"name":"adenosine receptor binding","synonyms":[{"name":"adenosine receptor ligand","type":"narrow"}],"termid":"GO:0031685"}


id: PBO:0090614
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dephospho-CoA kinase","termid":"PBO:0090614"}


id: GO:1905872
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of protein localization to cell leading edge.","definition_xrefs":["PMID:26324884","GOC:TermGenie","GO_REF:0000058"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of protein localization","termid":"GO:1903828"},{"relation_name":"is_a","term_name":"regulation of protein localization to cell leading edge","termid":"GO:1905871"},{"relation_name":"negatively_regulates","term_name":"protein localization to cell leading edge","termid":"GO:1902463"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of protein localization to cell leading edge","synonyms":[{"name":"down regulation of protein localisation in cell leading edge","type":"exact"},{"name":"down regulation of protein localisation to cell leading edge","type":"exact"},{"name":"down regulation of protein localization in cell leading edge","type":"exact"},{"name":"down regulation of protein localization to cell leading edge","type":"exact"},{"name":"down-regulation of protein localisation in cell leading edge","type":"exact"},{"name":"down-regulation of protein localisation to cell leading edge","type":"exact"},{"name":"down-regulation of protein localization in cell leading edge","type":"exact"},{"name":"down-regulation of protein localization to cell leading edge","type":"exact"},{"name":"downregulation of protein localisation in cell leading edge","type":"exact"},{"name":"downregulation of protein localisation to cell leading edge","type":"exact"},{"name":"downregulation of protein localization in cell leading edge","type":"exact"},{"name":"downregulation of protein localization to cell leading edge","type":"exact"},{"name":"inhibition of protein localisation in cell leading edge","type":"narrow"},{"name":"inhibition of protein localisation to cell leading edge","type":"narrow"},{"name":"inhibition of protein localization in cell leading edge","type":"narrow"},{"name":"inhibition of protein localization to cell leading edge","type":"narrow"},{"name":"negative regulation of protein localisation in cell leading edge","type":"exact"},{"name":"negative regulation of protein localisation to cell leading edge","type":"exact"},{"name":"negative regulation of protein localization in cell leading edge","type":"exact"}],"termid":"GO:1905872"}


id: PR:Q9P5N0
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- abc3 gene.","definition_xrefs":["UniProtKB:Q9P5N0","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ATP-binding cassette transporter abc3 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC359.05","synonyms":[{"name":"Spom972h-abc3","type":"exact"}],"termid":"PR:Q9P5N0"}


id: PBO:0052138
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"potassium voltage-gated channel subfamily H member 5","termid":"PBO:0052138"}


id: PBO:0081522
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein 431","termid":"PBO:0081522"}


id: GO:0032083
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops or reduces the rate of type IV restriction endodeoxyribonuclease activity.","definition_xrefs":["GOC:mah","GOC:tb","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of restriction endodeoxyribonuclease activity","termid":"GO:0032073"},{"relation_name":"is_a","term_name":"regulation of type IV site-specific deoxyribonuclease activity","termid":"GO:0032087"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0006259"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"negatively_regulates","termid":"GO:0006259"}],"interesting_parent_ids":["GO:0008150","GO:0006259"],"is_obsolete":false,"name":"negative regulation of type IV site-specific deoxyribonuclease activity","synonyms":[{"name":"down regulation of type IV restriction endodeoxyribonuclease activity","type":"exact"},{"name":"down-regulation of type IV restriction endodeoxyribonuclease activity","type":"exact"},{"name":"downregulation of type IV restriction endodeoxyribonuclease activity","type":"exact"},{"name":"inhibition of type IV restriction endodeoxyribonuclease activity","type":"narrow"},{"name":"negative regulation of type IV restriction endodeoxyribonuclease activity","type":"exact"},{"name":"type IV restriction endodeoxyribonuclease inhibitor","type":"related"},{"name":"type IV restriction enzyme inhibitor","type":"related"}],"termid":"GO:0032083"}


id: FYPO:0003029
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the occurrence of mRNA splicing via the spliceosome is decreased.","definition_xrefs":["PMID:24298023","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal mRNA splicing, via spliceosome","termid":"FYPO:0000189"},{"relation_name":"is_a","term_name":"decreased RNA splicing","termid":"FYPO:0003040"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0006551"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000294"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0005447","FYPO:0001985","FYPO:0000002","FYPO:0006551","FYPO:0000294"],"is_obsolete":false,"name":"decreased mRNA splicing, via spliceosome","synonyms":[{"name":"decreased mRNA splicing, via spliceosome during mitotic cell cycle","type":"related"},{"name":"decreased mRNA splicing, via spliceosome during vegetative growth","type":"exact"},{"name":"decreased nuclear mRNA splicing, via spliceosome","type":"exact"},{"name":"decreased splicing","type":"broad"},{"name":"reduced mRNA splicing, via spliceosome","type":"exact"}],"termid":"FYPO:0003029"}


id: GO:0044396
data:
  {"annotated_genes":["SJAG_02075","SJAG_01732","SJAG_03146","SJAG_04982","SJAG_01964","SJAG_03088","SJAG_00649","SJAG_02700","SJAG_02177","SJAG_03086","SJAG_04887","SJAG_01268","SJAG_02245","SJAG_02511","SJAG_03044","SJAG_03119","SJAG_01384","SJAG_04100","SJAG_04001","SJAG_04052","SJAG_04644","SJAG_02228","SJAG_04465","SJAG_04886","SJAG_00521","SJAG_01894"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[84041,90890,93288,94383,94445,100554],"is_not":false,"summary":null,"term":"GO:0044396"},{"annotations":[78646,74677,98516,113590,107439,110104,105997,98757,95374,93485,77978,73249,83941,107462,95197,100571,86386,98701,72967,76311],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0000147"}]},"cv_name":"biological_process","definition":"A process that is carried out at the cellular level and results in the assembly, arrangement of constituent parts, or disassembly of an actin cortical patch, a discrete actin-containing structure found at the plasma membrane in cells, at sites of endocytosis.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular component organization","termid":"GO:0016043"},{"relation_name":"part_of","term_name":"cortical actin cytoskeleton organization","termid":"GO:0030866"}],"gene_count":26,"genes_by_uniquename":{"SJAG_00521":null,"SJAG_00649":null,"SJAG_01268":null,"SJAG_01384":null,"SJAG_01732":null,"SJAG_01894":null,"SJAG_01964":null,"SJAG_02075":null,"SJAG_02177":null,"SJAG_02228":null,"SJAG_02245":null,"SJAG_02511":null,"SJAG_02700":null,"SJAG_03044":null,"SJAG_03086":null,"SJAG_03088":null,"SJAG_03119":null,"SJAG_03146":null,"SJAG_04001":null,"SJAG_04052":null,"SJAG_04100":null,"SJAG_04465":null,"SJAG_04644":null,"SJAG_04886":null,"SJAG_04887":null,"SJAG_04982":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0007010"},{"rel_name":"part_of","termid":"GO:0030036"}],"interesting_parent_ids":["GO:0008150","GO:0030036","GO:0007010"],"is_obsolete":false,"name":"actin cortical patch organization","references_by_uniquename":{"GO_REF:0000107":null,"PMID:21873635":null},"synonyms":[{"name":"actin cortical patch organisation","type":"exact"}],"termid":"GO:0044396","terms_by_termid":{"GO:0000147":null,"GO:0044396":null}}


id: PBO:0069080
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 327, pseudogene","termid":"PBO:0069080"}


id: PBO:0018105
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Rad16 homolog ATP-dependent DNA helicase/ ubiquitin protein ligase E3 Rhp16","termid":"PBO:0018105"}


id: GO:1902988
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The aggregation, arrangement and bonding together of a set of components to form a neurofibrillary tangle.","definition_xrefs":["PMID:22986780","GOC:sjp","PMID:15897157","GO_REF:0000079","GOC:TermGenie","PMID:24154541"],"direct_ancestors":[{"relation_name":"is_a","term_name":"inclusion body assembly","termid":"GO:0070841"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0044085"}],"interesting_parent_ids":["GO:0044085","GO:0008150"],"is_obsolete":false,"name":"neurofibrillary tangle assembly","synonyms":[{"name":"flame-shaped neurofibrillary tangle assembly","type":"narrow"},{"name":"flame-shaped neurofibrillary tangle formation","type":"narrow"},{"name":"neurofibrillary tangle formation","type":"exact"},{"name":"star-shaped neurofibrillary tangle assembly","type":"narrow"},{"name":"star-shaped neurofibrillary tangle formation","type":"narrow"}],"termid":"GO:1902988"}


id: PBO:0005520
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"condensin complex non-SMC subunit Cnd3","termid":"PBO:0005520"}


id: PBO:0017968
data:
  {"annotation_feature_type":"gene","cv_name":"complementation","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"functionally complements S. cerevisiae YER025W","termid":"PBO:0017968"}


id: PBO:0057203
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 374b","termid":"PBO:0057203"}


id: PBO:0050557
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"HRas proto-oncogene, GTPase","termid":"PBO:0050557"}


id: PBO:0053009
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"lysosomal associated membrane protein family member 5","termid":"PBO:0053009"}


id: GO:0042853
data:
  {"annotated_genes":["SJAG_04145"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[106519],"is_not":false,"summary":null,"term":"GO:0042853"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of L-alanine, the L-enantiomer of 2-aminopropanoic acid, i.e. (2S)-2-aminopropanoic acid.","definition_xrefs":["GOC:jl","GOC:jsg","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"alanine catabolic process","termid":"GO:0006524"},{"relation_name":"is_a","term_name":"pyruvate family amino acid catabolic process","termid":"GO:0009080"},{"relation_name":"is_a","term_name":"L-alanine metabolic process","termid":"GO:0042851"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04145":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0044248"},{"rel_name":"is_a","termid":"GO:0006520"}],"interesting_parent_ids":["GO:0008150","GO:0044281","GO:0006520","GO:0044248"],"is_obsolete":false,"name":"L-alanine catabolic process","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"L-alanine breakdown","type":"exact"},{"name":"L-alanine catabolism","type":"exact"},{"name":"L-alanine degradation","type":"exact"}],"termid":"GO:0042853","terms_by_termid":{"GO:0042853":null}}


id: PBO:0052647
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"keratin 8 pseudogene 15","termid":"PBO:0052647"}


id: PBO:0054101
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1460","termid":"PBO:0054101"}


id: GO:0048390
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which the anatomical structures of the intermediate mesoderm are generated and organized.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mesoderm morphogenesis","termid":"GO:0048332"},{"relation_name":"part_of","term_name":"intermediate mesoderm development","termid":"GO:0048389"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"intermediate mesoderm morphogenesis","termid":"GO:0048390"}


id: PBO:0074608
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nucleolar RNA, H/ACA box 13","termid":"PBO:0074608"}


id: FYPO:0007775
data:
  {"alleles_by_uniquename":{"SJAG_00266:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_00266","name":"atf1delta","uniquename":"SJAG_00266:allele-1"},"SJAG_01787:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_01787","name":"pck1delta","uniquename":"SJAG_01787:allele-1"},"SJAG_02592:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_02592","name":"sty1delta","uniquename":"SJAG_02592:allele-1"}},"annotation_feature_type":"genotype","cv_annotations":{"single_locus_phenotype":[{"annotations":[114550,114554,114580],"is_not":false,"summary":null,"term":"FYPO:0007775"}]},"cv_name":"fission_yeast_phenotype","definition":"A phenotype in which hyphae are longer than normal.","definition_xrefs":["PomBase:mah","PMID:31150379"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal hyphal growth","termid":"FYPO:0007773"}],"gene_count":3,"genes_by_uniquename":{"SJAG_00266":null,"SJAG_01787":null,"SJAG_02592":null},"genotype_count":3,"genotypes_by_uniquename":{"atf1delta":{"display_name":"atf1delta","display_uniquename":"atf1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_00266:allele-1","expression":"Null"}]}]},"pck1delta":{"display_name":"pck1delta","display_uniquename":"pck1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01787:allele-1","expression":"Null"}]}]},"sty1delta":{"display_name":"sty1delta","display_uniquename":"sty1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_02592:allele-1","expression":"Null"}]}]}},"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0007773"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0007773"],"is_obsolete":false,"name":"increased hyphal length","references_by_uniquename":{"PMID:31150379":null,"PMID:34198697":null},"single_locus_annotated_genes":["SJAG_01787","SJAG_02592","SJAG_00266"],"single_locus_genotype_uniquenames":["atf1delta","sty1delta","pck1delta"],"synonyms":[{"name":"long hyphae","type":"exact"}],"termid":"FYPO:0007775","terms_by_termid":{"FYECO:0000314":null,"FYPO:0007775":null,"FYPO_EXT:0000001":null}}


id: GO:1903155
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Any glutathione transmembrane transporter activity that is involved in glutathione import into cell.","definition_xrefs":["GOC:dos","GOC:TermGenie","ISBN:0-8249-3695-6","GO_REF:0000061"],"gene_count":0,"genotype_count":0,"name":"obsolete glutathione transmembrane transporter activity involved in glutathione import into cell (obsolete GO:1903155)","synonyms":[{"name":"glutathione transmembrane transporter activity involved in glutathione import into cell","type":"exact"},{"name":"glutathione transmembrane transporter activity involved in glutathione uptake","type":"exact"}],"termid":"GO:1903155"}


id: SO:0002060
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A translocation where the regions involved are from different chromosomes.","definition_xrefs":["NCBI:th"],"direct_ancestors":[{"relation_name":"is_a","term_name":"chromosomal_translocation","termid":"SO:1000044"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"interchromosomal_translocation","termid":"SO:0002060"}


id: GO:0120179
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The disaggregation of an adherens junction into its constituent components. An adherens junction is a cell-cell junction composed of the epithelial cadherin-catenin complex at which the cytoplasmic face of the plasma membrane is attached to actin filaments.","definition_xrefs":["GOC:bc","PMID:25490267","GOC:aruk"],"direct_ancestors":[{"relation_name":"is_a","term_name":"adherens junction organization","termid":"GO:0034332"},{"relation_name":"is_a","term_name":"cell-cell junction disassembly","termid":"GO:0150147"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"adherens junction disassembly","termid":"GO:0120179"}


id: GO:0008294
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: ATP = 3',5'-cyclic AMP + diphosphate, stimulated by calcium-bound calmodulin.","definition_xrefs":["EC:4.6.1.1","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"adenylate cyclase activity","termid":"GO:0004016"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0009975"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016829"}],"interesting_parent_ids":["GO:0009975","GO:0003674","GO:0003824","GO:0016829"],"is_obsolete":false,"name":"calcium- and calmodulin-responsive adenylate cyclase activity","secondary_identifiers":["Reactome:R-HSA-442715","Reactome:R-HSA-111930"],"synonyms":[{"name":"calcium- and calmodulin-responsive adenylyl cyclase activity","type":"exact"},{"name":"calcium/calmodulin-responsive adenylate cyclase activity","type":"exact"}],"termid":"GO:0008294"}


id: PBO:0042828
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"centrin 1","termid":"PBO:0042828"}


id: SO:0001699
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A primer with one or more mismatches to the DNA template corresponding to a position within a restriction enzyme recognition site.","direct_ancestors":[{"relation_name":"is_a","term_name":"primer","termid":"SO:0000112"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dCAPS_primer","synonyms":[{"name":"dCAPS primer","type":"exact"},{"name":"derived cleaved amplified polymorphic primer","type":"exact"}],"termid":"SO:0001699"}


id: GO:0043323
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of natural killer cell degranulation.","definition_xrefs":["ISBN:0781735149"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of leukocyte degranulation","termid":"GO:0043302"},{"relation_name":"is_a","term_name":"regulation of natural killer cell degranulation","termid":"GO:0043321"},{"relation_name":"is_a","term_name":"positive regulation of natural killer cell mediated cytotoxicity","termid":"GO:0045954"},{"relation_name":"positively_regulates","term_name":"natural killer cell degranulation","termid":"GO:0043320"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0016192"},{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"positively_regulates","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"positively_regulates","termid":"GO:0016192"}],"interesting_parent_ids":["GO:0006810","GO:0016192","GO:0008150"],"is_obsolete":false,"name":"positive regulation of natural killer cell degranulation","synonyms":[{"name":"activation of natural killer cell degranulation","type":"narrow"},{"name":"positive regulation of NK cell degranulation","type":"exact"},{"name":"positive regulation of NK cell granule exocytosis","type":"exact"},{"name":"positive regulation of natural killer cell granule exocytosis","type":"exact"},{"name":"stimulation of natural killer cell degranulation","type":"narrow"},{"name":"up regulation of natural killer cell degranulation","type":"exact"},{"name":"up-regulation of natural killer cell degranulation","type":"exact"},{"name":"upregulation of natural killer cell degranulation","type":"exact"}],"termid":"GO:0043323"}


id: PBO:0061898
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"opsin 4","termid":"PBO:0061898"}


id: FYPO:0004205
data:
  {"alleles_by_uniquename":{"SJAG_03689:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_03689","name":"dcr1delta","uniquename":"SJAG_03689:allele-1"}},"annotation_feature_type":"genotype","cv_annotations":{"single_locus_phenotype":[{"annotations":[114384],"is_not":false,"summary":null,"term":"FYPO:0004205"}]},"cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of mature siRNA measured in a cell is lower than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased mature ncRNA level","termid":"FYPO:0006466"}],"gene_count":1,"genes_by_uniquename":{"SJAG_03689":null},"genotype_count":1,"genotypes_by_uniquename":{"dcr1delta":{"display_name":"dcr1delta","display_uniquename":"dcr1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03689:allele-1","expression":"Null"}]}]}},"interesting_parent_details":[{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0006551"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0001985","FYPO:0006551","FYPO:0000002","FYPO:0005447"],"is_obsolete":false,"name":"decreased siRNA level","references_by_uniquename":{"PMID:35226668":null},"single_locus_annotated_genes":["SJAG_03689"],"single_locus_genotype_uniquenames":["dcr1delta"],"synonyms":[{"name":"decreased mature siRNA level","type":"exact"},{"name":"decreased siRNA accumulation","type":"related"},{"name":"decreased siRNA level during mitotic cell cycle","type":"related"},{"name":"decreased siRNA level during vegetative growth","type":"exact"},{"name":"decreased siRNA transcript level","type":"exact"},{"name":"decreased small interfering RNA level","type":"exact"},{"name":"reduced siRNA level","type":"exact"}],"termid":"FYPO:0004205","terms_by_termid":{"FYECO:0000005":null,"FYECO:0000162":null,"FYPO:0004205":null,"FYPO_EXT:0000001":null}}


id: PATO:0001187
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A maturity quality inhering in a insect by virtue of the bearer's being in the chrysalis (cocoon) or post larval stage.","definition_xrefs":["WordNet:WordNet"],"direct_ancestors":[{"relation_name":"is_a","term_name":"maturity","termid":"PATO:0000261"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pupal","termid":"PATO:0001187"}


id: GO:0097647
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A G protein-coupled receptor signaling pathway initiated by amylin binding to its receptor on the surface of a target cell, and ending with the regulation of a downstream cellular process.","definition_xrefs":["PMID:18687416","GOC:bhm","PMID:10871296","PMID:12037140"],"direct_ancestors":[{"relation_name":"is_a","term_name":"calcitonin family receptor signaling pathway","termid":"GO:0097646"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"amylin receptor signaling pathway","synonyms":[{"name":"amilyn receptor signalling pathway","type":"exact"}],"termid":"GO:0097647"}


id: PR:Q9HGN5
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPBC36B7.05c gene.","definition_xrefs":["UniProtKB:Q9HGN5","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"E3 ubiquitin-protein ligase C36B7.05c (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC36B7.05c","synonyms":[{"name":"Spom972h-SPBC36B7.05c","type":"exact"}],"termid":"PR:Q9HGN5"}


id: PR:O14238
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit DAD1 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx","PANTHER:PTHR10705:SF0","OMA:SCHPO01147"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit ost2 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC6F6.05","secondary_identifiers":["UniProtKB:O14238"],"synonyms":[{"name":"Spom972h-DAD1","type":"exact"},{"name":"oligosaccharyl transferase 16 kDa subunit (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"oligosaccharyl transferase subunit epsilon (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:O14238"}


id: PBO:0046564
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"endogenous retrovirus group K member 6, envelope","termid":"PBO:0046564"}


id: GO:0070130
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of proteins by the translation of mRNA in a mitochondrion.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of translation","termid":"GO:0017148"},{"relation_name":"is_a","term_name":"regulation of mitochondrial translation","termid":"GO:0070129"},{"relation_name":"negatively_regulates","term_name":"mitochondrial translation","termid":"GO:0032543"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0140053"},{"rel_name":"regulates","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"negatively_regulates","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0140053","GO:0010467","GO:0008150"],"is_obsolete":false,"name":"negative regulation of mitochondrial translation","synonyms":[{"name":"negative regulation of mitochondrial protein anabolism","type":"exact"},{"name":"negative regulation of mitochondrial protein biosynthesis","type":"exact"},{"name":"negative regulation of mitochondrial protein formation","type":"exact"},{"name":"negative regulation of mitochondrial protein synthesis","type":"exact"}],"termid":"GO:0070130"}


id: PBO:0055975
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"leucine rich repeat kinase 1","termid":"PBO:0055975"}


id: GO:0008457
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: UDP-N-acetyl-D-glucosamine + beta-D-galactosyl-1,4-N-acetyl-beta-D-glucosaminyl-1,3-beta-D-galactosyl-1,4-beta-D-glucosylceramide = UDP + N-acetyl-D-glucosaminyl-1,3-beta-D-galactosyl-1,4-N-acetyl-beta-D-glucosaminyl-1,3-beta-D-galactosyl-1,4-beta-D-glucosylceramide.","definition_xrefs":["EC:2.4.1.149"],"direct_ancestors":[{"relation_name":"is_a","term_name":"acetylglucosaminyltransferase activity","termid":"GO:0008375"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016757"},{"rel_name":"is_a","termid":"GO:0016740"}],"interesting_parent_ids":["GO:0016757","GO:0003674","GO:0003824","GO:0016740"],"is_obsolete":false,"name":"beta-galactosyl-N-acetylglucosaminylgalactosylglucosyl-ceramide beta-1,3-acetylglucosaminyltransferase activity","secondary_identifiers":["MetaCyc:2.4.1.163-RXN","RHEA:23004"],"synonyms":[{"name":"UDP-N-acetyl-D-glucosamine:beta-D-galactosyl-1,4-N-acetyl-beta-D-glucosaminyl-1,3-beta-D-galactosyl-1,4-beta-D-glucosylceramide beta-1,3-acetylglucosaminyltransferase activity","type":"exact"},{"name":"poly-N-acetyllactosamine extension enzyme activity","type":"broad"},{"name":"uridine diphosphoacetylglucosamine-acetyllactosaminide beta1->3-acetylglucosaminyltransferase","type":"broad"}],"termid":"GO:0008457"}


id: PBO:0058051
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 4272","termid":"PBO:0058051"}


id: PBO:0089088
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"recombination mediator Swi2","termid":"PBO:0089088"}


id: PBO:0072442
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein S29 pseudogene 6","termid":"PBO:0072442"}


id: PBO:0048807
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"G protein subunit beta 1 like","termid":"PBO:0048807"}


id: GO:0070611
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: S-adenosyl-L-methionine + (histone H3)-arginine (position 2) = S-adenosyl-L-homocysteine + (histone H3)-N-methyl-arginine (position 2). This reaction is the addition of a methyl group to the arginine residue at position 2 of histone H3.","definition_xrefs":["GOC:mah","PMID:17898714"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein-arginine N-methyltransferase activity","termid":"GO:0016274"},{"relation_name":"is_a","term_name":"histone H3 methyltransferase activity","termid":"GO:0140938"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0140096"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016741"},{"rel_name":"is_a","termid":"GO:0008276"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016741","GO:0140096","GO:0016740","GO:0003824","GO:0008276","GO:0003674"],"is_obsolete":false,"name":"histone H3R2 methyltransferase activity","synonyms":[{"name":"histone H3R2 arginine methyltransferase activity","type":"exact"},{"name":"histone methylase activity (H3-R2 specific)","type":"exact"},{"name":"histone methyltransferase activity (H3-R2 specific)","type":"exact"},{"name":"histone-H3R2 methyltransferase activity","type":"exact"},{"name":"histone-arginine N-methyltransferase activity (H3-R2 specific)","type":"exact"}],"termid":"GO:0070611"}


id: GO:0004111
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: ATP + creatine = N-phosphocreatine + ADP + 2 H+.","definition_xrefs":["EC:2.7.3.2","RHEA:17157"],"direct_ancestors":[{"relation_name":"is_a","term_name":"kinase activity","termid":"GO:0016301"},{"relation_name":"is_a","term_name":"phosphotransferase activity, nitrogenous group as acceptor","termid":"GO:0016775"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016301"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016740","GO:0003824","GO:0016301","GO:0003674"],"is_obsolete":false,"name":"creatine kinase activity","secondary_identifiers":["Reactome:R-HSA-200318","MetaCyc:CREATINE-KINASE-RXN","KEGG_REACTION:R01881","Reactome:R-HSA-200326"],"synonyms":[{"name":"ATP:creatine N-phosphotransferase activity","type":"related"},{"name":"ATP:creatine phosphotransferase activity","type":"related"},{"name":"BB-CK","type":"related"},{"name":"CK","type":"related"},{"name":"CK-BB","type":"related"},{"name":"CK-MB","type":"related"},{"name":"CK-MM","type":"related"},{"name":"CKMiMi","type":"related"},{"name":"MB-CK","type":"related"},{"name":"MM-CK","type":"related"},{"name":"Mi-CK","type":"related"},{"name":"MiMi-CK","type":"related"},{"name":"adenosine triphosphate-creatine transphosphorylase activity","type":"related"},{"name":"creatine phosphokinase activity","type":"related"},{"name":"creatine phosphotransferase activity","type":"related"},{"name":"phosphocreatine kinase activity","type":"related"}],"termid":"GO:0004111"}


id: PBO:0028294
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abolished_dioxygenase_activity","termid":"PBO:0028294"}


id: PBO:0031736
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_mitotic_recombination","termid":"PBO:0031736"}


id: PBO:0041125
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"BTB domain containing 7 pseudogene 1","termid":"PBO:0041125"}


id: PBO:0018210
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial proton-transporting ATP synthase inhibitor (predicted)","termid":"PBO:0018210"}


id: PBO:0028737
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-hercynylselenocysteine_absent_from_cell","termid":"PBO:0028737"}


id: GO:0098033
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A fiber attached to the neck at the base of some icosahedral viral capsids.","definition_xrefs":["GOC:bm"],"direct_ancestors":[{"relation_name":"is_a","term_name":"viral capsid, fiber","termid":"GO:0098022"},{"relation_name":"part_of","term_name":"icosahedral viral capsid, neck","termid":"GO:0098030"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"icosahedral viral capsid, neck fiber","termid":"GO:0098033"}


id: PBO:0049123
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"G protein-coupled receptor associated sorting protein family member 3","termid":"PBO:0049123"}


id: GO:0070152
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process of coupling isoleucine to isoleucyl-tRNA in a mitochondrion, catalyzed by isoleucyl-tRNA synthetase. In tRNA aminoacylation, the amino acid is first activated by linkage to AMP and then transferred to either the 2'- or the 3'-hydroxyl group of the 3'-adenosine residue of the tRNA.","definition_xrefs":["GOC:mcc","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"isoleucyl-tRNA aminoacylation","termid":"GO:0006428"},{"relation_name":"is_a","term_name":"tRNA aminoacylation for mitochondrial protein translation","termid":"GO:0070127"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006520"},{"rel_name":"part_of","termid":"GO:0140053"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0006399"}],"interesting_parent_ids":["GO:0140053","GO:0008150","GO:0010467","GO:0006399","GO:0006520"],"is_obsolete":false,"name":"mitochondrial isoleucyl-tRNA aminoacylation","termid":"GO:0070152"}


id: PBO:0074163
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"solute carrier family 35 member F6","termid":"PBO:0074163"}


id: PBO:0002318
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"alpha-amylase homolog (predicted)","termid":"PBO:0002318"}


id: FYPO:0001073
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the import of myo-inositol into the cell is abnormal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal transport during vegetative growth","termid":"FYPO:0005973"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0005447","FYPO:0001320","FYPO:0000138","FYPO:0001985"],"is_obsolete":false,"name":"abnormal myo-inositol import","synonyms":[{"name":"abnormal myo-inositol import across plasma membrane","type":"exact"},{"name":"abnormal myo-inositol import during mitotic cell cycle","type":"related"},{"name":"abnormal myo-inositol import during vegetative growth","type":"exact"},{"name":"abnormal myo-inositol import into cell","type":"exact"},{"name":"abnormal myo-inositol uptake","type":"exact"}],"termid":"FYPO:0001073"}


id: PBO:0069385
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 645, pseudogene","termid":"PBO:0069385"}


id: PBO:0028089
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_histone_H3_acetylation_at_centromere_central_core","termid":"PBO:0028089"}


id: SO:0002337
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"Cytosolic 2S rRNA is a 30 nucleotide RNA component of the large subunit of cytosolic ribosomes in Drosophila and at least some other Diptera. It is homologous to the 3' part of other 5.8S rRNA molecules. The 3' end of the 5.8S molecule is able to base-pair with the 5' end of the 2S rRNA to generate a helical region equivalent in position to the 'GC-rich hairpin' found in all previously sequenced 5.8S molecules.","definition_xrefs":["PMID:10788608","PMID:407103","PMID:4847940","PMID:768488"],"direct_ancestors":[{"relation_name":"derives_from","term_name":"cytosolic_rRNA_2S_gene","termid":"SO:0002336"},{"relation_name":"is_a","term_name":"cytosolic_LSU_rRNA","termid":"SO:0000651"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cytosolic_2S_rRNA","synonyms":[{"name":"cytosolic 2S rRNA","type":"exact"},{"name":"cytosolic rRNA 2S","type":"exact"}],"termid":"SO:0002337"}


id: GO:0021794
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which the thalamus changes over time, from its initial formation to its mature state.","definition_xrefs":["GOC:jid","GOC:dgh","GO_REF:0000021","GOC:dph","GOC:cls"],"direct_ancestors":[{"relation_name":"is_a","term_name":"anatomical structure development","termid":"GO:0048856"},{"relation_name":"part_of","term_name":"diencephalon development","termid":"GO:0021536"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"thalamus development","termid":"GO:0021794"}


id: GO:0034179
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate, or extent of toll-like receptor 13 signaling pathway.","definition_xrefs":["GOC:add","PMID:16551253","PMID:17328678"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of cytoplasmic pattern recognition receptor signaling pathway","termid":"GO:0039531"},{"relation_name":"regulates","term_name":"toll-like receptor 13 signaling pathway","termid":"GO:0034178"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"regulation of toll-like receptor 13 signaling pathway","synonyms":[{"name":"regulation of TLR13 signaling pathway","type":"exact"},{"name":"regulation of toll-like receptor 13 signalling pathway","type":"exact"}],"termid":"GO:0034179"}


id: GO:0043414
data:
  {"annotated_genes":["SJAG_02281","SJAG_02377","SJAG_02350","SJAG_04649","SJAG_00744","SJAG_02099","SJAG_04453","SJAG_03332","SJAG_01375","SJAG_00943","SJAG_02417","SJAG_02042","SJAG_01269","SJAG_00255","SJAG_04680","SJAG_03877","SJAG_02821","SJAG_01261","SJAG_04034","SJAG_03289","SJAG_00499","SJAG_03008","SJAG_02637","SJAG_03773","SJAG_02817","SJAG_03367","SJAG_04735","SJAG_03901","SJAG_01958","SJAG_03713","SJAG_03410","SJAG_04367","SJAG_04736","SJAG_00886","SJAG_05249","SJAG_04848","SJAG_03016","SJAG_02352","SJAG_05334","SJAG_01314","SJAG_02302","SJAG_02024","SJAG_04993","SJAG_04181","SJAG_00722","SJAG_04890","SJAG_00325","SJAG_02386"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[74315],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0036261"},{"annotations":[77037],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0070901"},{"annotations":[59766],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0106005"},{"annotations":[104466],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0001510"},{"annotations":[78600,74846],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0070476"},{"annotations":[77605,78268,74896,77156,77597],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0070475"},{"annotations":[64436,78006,77557,94408,74460,103741,59538],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0031167"},{"annotations":[103465,94341,89759,105523,106631],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0000452"},{"annotations":[110896,114060],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0106004"},{"annotations":[102159,105483],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0106217"},{"annotations":[101190,86172],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0002946"},{"annotations":[75421,107425,74847,90320,93640,73429,84351,74708,72482,75233,72149,73584],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0030488"},{"annotations":[94940,77040],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0002939"},{"annotations":[72973,99589],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0002940"},{"annotations":[110046],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0002128"},{"annotations":[89565,84050],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0002127"},{"annotations":[93416,98352],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0002130"}]},"cv_name":"biological_process","definition":"The covalent attachment of a methyl residue to one or more monomeric units in a polypeptide, polynucleotide, polysaccharide, or other biological macromolecule.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"methylation","termid":"GO:0032259"},{"relation_name":"is_a","term_name":"macromolecule modification","termid":"GO:0043412"}],"gene_count":48,"genes_by_uniquename":{"SJAG_00255":null,"SJAG_00325":null,"SJAG_00499":null,"SJAG_00722":null,"SJAG_00744":null,"SJAG_00886":null,"SJAG_00943":null,"SJAG_01261":null,"SJAG_01269":null,"SJAG_01314":null,"SJAG_01375":null,"SJAG_01958":null,"SJAG_02024":null,"SJAG_02042":null,"SJAG_02099":null,"SJAG_02281":null,"SJAG_02302":null,"SJAG_02350":null,"SJAG_02352":null,"SJAG_02377":null,"SJAG_02386":null,"SJAG_02417":null,"SJAG_02637":null,"SJAG_02817":null,"SJAG_02821":null,"SJAG_03008":null,"SJAG_03016":null,"SJAG_03289":null,"SJAG_03332":null,"SJAG_03367":null,"SJAG_03410":null,"SJAG_03713":null,"SJAG_03773":null,"SJAG_03877":null,"SJAG_03901":null,"SJAG_04034":null,"SJAG_04181":null,"SJAG_04367":null,"SJAG_04453":null,"SJAG_04649":null,"SJAG_04680":null,"SJAG_04735":null,"SJAG_04736":null,"SJAG_04848":null,"SJAG_04890":null,"SJAG_04993":null,"SJAG_05249":null,"SJAG_05334":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"macromolecule methylation","references_by_uniquename":{"GO_REF:0000104":null,"GO_REF:0000107":null,"GO_REF:0000108":null,"PMID:21873635":null},"termid":"GO:0043414","terms_by_termid":{"GO:0000452":null,"GO:0001510":null,"GO:0002127":null,"GO:0002128":null,"GO:0002130":null,"GO:0002939":null,"GO:0002940":null,"GO:0002946":null,"GO:0030488":null,"GO:0031167":null,"GO:0036261":null,"GO:0070475":null,"GO:0070476":null,"GO:0070901":null,"GO:0106004":null,"GO:0106005":null,"GO:0106217":null}}


id: GO:0036295
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus reflecting an increase in the level of oxygen.","definition_xrefs":["GOC:al"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to increased oxygen levels","termid":"GO:0036296"},{"relation_name":"is_a","term_name":"cellular response to oxygen levels","termid":"GO:0071453"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cellular response to increased oxygen levels","synonyms":[{"name":"cellular response to raised oxygen levels","type":"exact"}],"termid":"GO:0036295"}


id: GO:2000680
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that modulates the frequency, rate or extent of rubidium ion transport.","definition_xrefs":["GOC:yaf"],"gene_count":0,"genotype_count":0,"name":"obsolete regulation of rubidium ion transport (obsolete GO:2000680)","synonyms":[{"name":"regulation of Rb+ transport","type":"exact"},{"name":"regulation of rubidium cation transport","type":"exact"}],"termid":"GO:2000680"}


id: PATO:0000503
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A phase which occurs during the light cycle.","definition_xrefs":["PATOC:GVG"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phase","termid":"PATO:0000083"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"light phase","termid":"PATO:0000503"}


id: PBO:0075151
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nuclear ribonucleoprotein polypeptide C pseudogene 7","termid":"PBO:0075151"}


id: FYPO:0003455
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the occurrence of the breakdown of arginine into other compounds, including proline, is decreased.","definition_xrefs":["PomBase:mah","GO:0019493"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular metabolism phenotype during vegetative growth","termid":"FYPO:0001348"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0000002"],"is_obsolete":false,"name":"decreased arginine catabolic process to proline","synonyms":[{"name":"decreased arginine catabolic process to proline during mitotic cell cycle","type":"related"},{"name":"decreased arginine catabolic process to proline during vegetative growth","type":"exact"},{"name":"decreased arginine catabolism to proline","type":"exact"},{"name":"reduced arginine catabolic process to proline","type":"exact"}],"termid":"FYPO:0003455"}


id: PBO:0002266
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dual specificity phosphatase Stp1","termid":"PBO:0002266"}


id: GO:0062068
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a chloroplast photosystem II.","definition_xrefs":["PMID:17400553"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein-containing complex binding","termid":"GO:0044877"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0005488","GO:0003674"],"is_obsolete":false,"name":"chloroplast photosystem II binding","termid":"GO:0062068"}


id: PBO:0028400
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abolished_mitochondrial_electron_transport,_succinate_to_ubiquinone","termid":"PBO:0028400"}


id: GO:0075179
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process in which the symbiont organism stops, prevents, or reduces the frequency, rate or extent of its symbiont calcium or calmodulin-mediated signal transduction as a result of detecting host molecules in, on or near its host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction.","definition_xrefs":["GOC:pamgo_curators"],"gene_count":0,"genotype_count":0,"name":"obsolete negative regulation of calcium or calmodulin-mediated signal transduction in response to host (obsolete GO:0075179)","synonyms":[{"name":"negative regulation of symbiont Ca++ or calmodulin-mediated signal transduction in response to host","type":"exact"},{"name":"negative regulation of symbiont calcium or calmodulin-mediated signal transduction in response to host","type":"exact"}],"termid":"GO:0075179"}


id: GO:0030842
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of the disassembly of intermediate filaments by the removal of monomers from a filament.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of intermediate filament polymerization or depolymerization","termid":"GO:0045108"},{"relation_name":"is_a","term_name":"regulation of protein depolymerization","termid":"GO:1901879"},{"relation_name":"regulates","term_name":"intermediate filament depolymerization","termid":"GO:0045106"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of intermediate filament depolymerization","termid":"GO:0030842"}


id: PBO:0036210
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_protein_transport_along_microtubule_during_vegetative_growth","termid":"PBO:0036210"}


id: FYPO:0006700
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of CDP measured in the cell is lower than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased cellular pentose phosphate level","termid":"FYPO:0006705"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001320","FYPO:0001985"],"is_obsolete":false,"name":"decreased cellular CDP level","synonyms":[{"name":"decreased cellular CDP level during mitotic cell cycle","type":"related"},{"name":"decreased cellular CDP level during vegetative growth","type":"exact"},{"name":"reduced cellular CDP level","type":"exact"}],"termid":"FYPO:0006700"}


id: GO:0010356
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: homogentisic acid + geranylgeranyl diphosphate = 2-methyl-6-geranylgeranylplastoquinol.","definition_xrefs":["PMID:16989822"],"direct_ancestors":[{"relation_name":"is_a","term_name":"homogentisate prenyltransferase activity","termid":"GO:0010354"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016765"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003824","GO:0016765","GO:0003674","GO:0016740"],"is_obsolete":false,"name":"homogentisate geranylgeranyltransferase activity","termid":"GO:0010356"}


id: GO:1903525
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of membrane tubulation.","definition_xrefs":["GOC:pm","PMID:18388313","GOC:TermGenie","GO_REF:0000058"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of plasma membrane organization","termid":"GO:1903729"},{"relation_name":"regulates","term_name":"plasma membrane tubulation","termid":"GO:0097320"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0061024"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0061024"],"is_obsolete":false,"name":"regulation of membrane tubulation","synonyms":[{"name":"regulation of plasma membrane tubulation","type":"exact"},{"name":"regulation of vesicle scission","type":"related"}],"termid":"GO:1903525"}


id: PBO:0051000
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"immunoglobulin binding protein 1","termid":"PBO:0051000"}


id: GO:0044444
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"OBSOLETE. Any constituent part of the cytoplasm, all of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.","definition_xrefs":["GOC:jl"],"gene_count":0,"genotype_count":0,"name":"obsolete cytoplasmic part (obsolete GO:0044444)","synonyms":[{"name":"cytoplasm component","type":"exact"}],"termid":"GO:0044444"}


id: GO:0001842
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which the neural fold is formed. The edges of the neural plate thicken and move up to form a U-shaped structure called the neural groove.","definition_xrefs":["GOC:dph","ISBN:0878932437"],"direct_ancestors":[{"relation_name":"is_a","term_name":"morphogenesis of embryonic epithelium","termid":"GO:0016331"},{"relation_name":"is_a","term_name":"anatomical structure formation involved in morphogenesis","termid":"GO:0048646"},{"relation_name":"is_a","term_name":"morphogenesis of an epithelial fold","termid":"GO:0060571"},{"relation_name":"part_of","term_name":"primary neural tube formation","termid":"GO:0014020"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"neural fold formation","synonyms":[{"name":"neural groove formation","type":"related"}],"termid":"GO:0001842"}


id: GO:0050367
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: L-arginine + L-tyrosine + ATP = L-tyrosyl-L-arginine + AMP + diphosphate + 2 H+.","definition_xrefs":["EC:6.3.2.24","RHEA:15345"],"direct_ancestors":[{"relation_name":"is_a","term_name":"acid-amino acid ligase activity","termid":"GO:0016881"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016874"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016874"],"is_obsolete":false,"name":"tyrosine-arginine ligase activity","secondary_identifiers":["KEGG_REACTION:R00735","MetaCyc:TYROSINE--ARGININE-LIGASE-RXN"],"synonyms":[{"name":"L-tyrosine:L-arginine ligase (AMP-forming)","type":"related"},{"name":"kyotorphin synthase activity","type":"related"},{"name":"kyotorphin synthetase activity","type":"related"},{"name":"kyotorphin-synthesizing enzyme activity","type":"related"},{"name":"tyrosyl-arginine synthase activity","type":"related"}],"termid":"GO:0050367"}


id: FYPO:0005445
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A physical cellular phenotype observed in the vegetative growth phase of the life cycle in which the length of the single-stranded telomeric 3' overhang is normal (i.e. indistinguishable from wild type).","definition_xrefs":["PMID:17429064","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal subcellular component during vegetative growth","termid":"FYPO:0001313"},{"relation_name":"part_of","term_name":"normal telomere structure during vegetative growth","termid":"FYPO:0002155"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"part_of","termid":"FYPO:0000257"},{"rel_name":"part_of","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0000257","FYPO:0000002","FYPO:0001320"],"is_obsolete":false,"name":"normal telomere 3' overhang length during vegetative growth","synonyms":[{"name":"normal telomere 3' overhang length during mitotic cell cycle","type":"related"}],"termid":"FYPO:0005445"}


id: GO:0070639
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving vitamin D2, (3S,5Z,7E,22E)-9,10-secoergosta-5,7,10(19),22-tetraen-3-ol.","definition_xrefs":["GOC:BHF","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"vitamin D metabolic process","termid":"GO:0042359"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006629"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006766"}],"interesting_parent_ids":["GO:0044281","GO:0006766","GO:0006629","GO:0008150"],"is_obsolete":false,"name":"vitamin D2 metabolic process","synonyms":[{"name":"calciferol metabolic process","type":"exact"},{"name":"ergocalciferol metabolic process","type":"exact"},{"name":"vitamin D2 metabolism","type":"exact"}],"termid":"GO:0070639"}


id: PBO:0070440
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribose 5-phosphate isomerase A","termid":"PBO:0070440"}


id: GO:0062062
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to an oligosaccharyltransferase complex.","definition_xrefs":["PMID:12887896"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein-containing complex binding","termid":"GO:0044877"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0005488","GO:0003674"],"is_obsolete":false,"name":"oligosaccharyltransferase complex binding","termid":"GO:0062062"}


id: GO:0060279
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of ovulation, the release of a mature ovum/oocyte from an ovary.","definition_xrefs":["GOC:dph","GOC:tb","GOC:kmv"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of multicellular organismal process","termid":"GO:0051240"},{"relation_name":"is_a","term_name":"regulation of ovulation","termid":"GO:0060278"},{"relation_name":"is_a","term_name":"positive regulation of reproductive process","termid":"GO:2000243"},{"relation_name":"positively_regulates","term_name":"ovulation","termid":"GO:0030728"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of ovulation","termid":"GO:0060279"}


id: PBO:0075699
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"splicing regulatory glutamic acid and lysine rich protein 1","termid":"PBO:0075699"}


id: PBO:0069627
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 904, pseudogene","termid":"PBO:0069627"}


id: GO:0015641
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. (Was not defined before being made obsolete).","definition_xrefs":["GOC:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete lipoprotein toxin (obsolete GO:0015641)","synonyms":[{"name":"lipoprotein toxin","type":"exact"}],"termid":"GO:0015641"}


id: PBO:0005899
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA Cysteine, mitochondrial","termid":"PBO:0005899"}


id: PBO:0004557
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"peptide release factor (predicted)","termid":"PBO:0004557"}


id: GO:0014035
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which a cell becomes capable of differentiating autonomously into a neural crest cell regardless of its environment; upon determination, the cell fate cannot be reversed.","definition_xrefs":["GOC:dh","GOC:ef"],"direct_ancestors":[{"relation_name":"is_a","term_name":"stem cell fate determination","termid":"GO:0048867"},{"relation_name":"part_of","term_name":"neural crest cell fate commitment","termid":"GO:0014034"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"neural crest cell fate determination","termid":"GO:0014035"}


id: PBO:0077722
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TNR intronic transcript 1","termid":"PBO:0077722"}


id: GO:1990865
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an episodic stimulus indicating lowered oxygen tension.","definition_xrefs":["PMID:24055447"],"gene_count":0,"genotype_count":0,"name":"obsolete response to intermittent hypoxia (obsolete GO:1990865)","termid":"GO:1990865"}


id: GO:2001130
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of a methane from a trimethylamine.","definition_xrefs":["GOC:mengo_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"amine metabolic process","termid":"GO:0009308"},{"relation_name":"is_a","term_name":"methanogenesis","termid":"GO:0015948"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006091"}],"interesting_parent_ids":["GO:0008150","GO:0006091"],"is_obsolete":false,"name":"methane biosynthetic process from trimethylamine","termid":"GO:2001130"}


id: PBO:0029171
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_growth_on_rapamycin","termid":"PBO:0029171"}


id: GO:0019553
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of glutamate, via the intermediate L-citramalate.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"glutamate catabolic process","termid":"GO:0006538"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0044248"},{"rel_name":"is_a","termid":"GO:0006520"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0044248","GO:0006520","GO:0044281"],"is_obsolete":false,"name":"glutamate catabolic process via L-citramalate","secondary_identifiers":["MetaCyc:GLUDEG-II-PWY"],"synonyms":[{"name":"glutamate breakdown via L-citramalate","type":"exact"},{"name":"glutamate degradation via L-citramalate","type":"exact"}],"termid":"GO:0019553"}


id: PBO:0060347
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"myosin XVB","termid":"PBO:0060347"}


id: SO:0000725
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"The transit_peptide is a short region at the N-terminus of the peptide that directs the protein to an organelle (chloroplast, mitochondrion, microbody or cyanelle).","direct_ancestors":[{"relation_name":"derives_from","term_name":"transit_peptide_region_of_CDS","termid":"SO:0002252"},{"relation_name":"is_a","term_name":"peptide_localization_signal","termid":"SO:0001527"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"SO:0000839"}],"interesting_parent_ids":["SO:0000839"],"is_obsolete":false,"name":"transit_peptide","secondary_identifiers":["BS:00055"],"synonyms":[{"name":"INSDC_feature:transit_peptide","type":"exact"},{"name":"signal","type":"related"},{"name":"transit","type":"related"},{"name":"transit peptide","type":"exact"}],"termid":"SO:0000725"}


id: GO:0044455
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"OBSOLETE. Any constituent part of a mitochondrial membrane, either of the lipid bilayers that surround the mitochondrion and form the mitochondrial envelope.","definition_xrefs":["GOC:jl"],"gene_count":0,"genotype_count":0,"name":"obsolete mitochondrial membrane part (obsolete GO:0044455)","termid":"GO:0044455"}


id: FYPO:0003434
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which the observed rate of ornithine carbamoyltransferase activity is decreased.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased catalytic activity","termid":"FYPO:0000663"},{"relation_name":"is_a","term_name":"abnormal ornithine carbamoyltransferase activity","termid":"FYPO:0003433"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000707"},{"rel_name":"is_a","termid":"FYPO:0000661"},{"rel_name":"is_a","termid":"FYPO:0000654"},{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0000661","FYPO:0000652","FYPO:0000002","FYPO:0005447","FYPO:0001985","FYPO:0000707","FYPO:0000654"],"is_obsolete":false,"name":"decreased ornithine carbamoyltransferase activity","synonyms":[{"name":"reduced ornithine carbamoyltransferase activity","type":"exact"}],"termid":"FYPO:0003434"}


id: PBO:0075064
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nucleolar RNA, C/D box 116-27","termid":"PBO:0075064"}


id: GO:0010362
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process in which blue light stops, prevents, or reduces the frequency, rate, or extent of the anion channel activity.","definition_xrefs":["PMID:17319842"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of anion channel activity","termid":"GO:0010360"},{"relation_name":"is_a","term_name":"regulation of anion channel activity by blue light","termid":"GO:0010361"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0055085"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"negatively_regulates","termid":"GO:0006810"},{"rel_name":"negatively_regulates","termid":"GO:0055085"},{"rel_name":"regulates","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0055085","GO:0008150","GO:0006810"],"is_obsolete":false,"name":"negative regulation of anion channel activity by blue light","synonyms":[{"name":"inhibition by blue light of anion channel activity","type":"narrow"},{"name":"negative regulation by blue light of anion channel activity","type":"exact"}],"termid":"GO:0010362"}


id: PR:O74789
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A serine/threonine-protein phosphatase 4 catalytic subunit that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PANTHER:PTHR11668:SF22","PRO:DNx","OMA:SCHPO03924"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"serine/threonine-protein phosphatase C26H8.05c (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC26H8.05c","secondary_identifiers":["UniProtKB:O74789"],"synonyms":[{"name":"Spom972h-PPP4C","type":"exact"}],"termid":"PR:O74789"}


id: PBO:0002050
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"40S ribosomal protein S14 (predicted)","termid":"PBO:0002050"}


id: FYPO:0007169
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which microtubule bundle formation that takes place as part of mitotic spindle assembly, and which normally results in a parallel arrangement of microtubules, is normal (i.e. indistinguishable from wild type).","definition_xrefs":["GO:0001578","PMID:18061564","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"microtubule cytoskeleton organization phenotype","termid":"FYPO:0000297"},{"relation_name":"is_a","term_name":"normal cellular process during vegetative growth","termid":"FYPO:0001319"},{"relation_name":"is_a","term_name":"normal cellular component organization","termid":"FYPO:0006003"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001312"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000257"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0000257","FYPO:0001312","FYPO:0001320"],"is_obsolete":false,"name":"normal microtubule bundle formation during mitotic spindle assembly","synonyms":[{"name":"normal microtubule array formation during mitotic spindle assembly","type":"related"},{"name":"normal microtubule bundle formation in spindle during mitotic prophase","type":"related"},{"name":"normal microtubule bundle formation involved in mitotic spindle assembly","type":"exact"},{"name":"normal mitotic spindle microtubule bundling during prophase","type":"exact"},{"name":"normal mitotic spindle microtubule bundling during spindle assembly","type":"related"}],"termid":"FYPO:0007169"}


id: GO:0034356
data:
  {"annotated_genes":["SJAG_01359","SJAG_00957","SJAG_01500","SJAG_04693"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[71099,86364,86763,108345],"is_not":false,"summary":null,"term":"GO:0034356"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of nicotinamide adenine dinucleotide (NAD) from the vitamin precursor nicotinamide riboside.","definition_xrefs":["PMID:17482543"],"direct_ancestors":[{"relation_name":"is_a","term_name":"NAD biosynthetic process","termid":"GO:0009435"}],"gene_count":4,"genes_by_uniquename":{"SJAG_00957":null,"SJAG_01359":null,"SJAG_01500":null,"SJAG_04693":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0055086"}],"interesting_parent_ids":["GO:0044281","GO:0008150","GO:0055086"],"is_obsolete":false,"name":"NAD biosynthesis via nicotinamide riboside salvage pathway","references_by_uniquename":{"GO_REF:0000107":null,"PMID:21873635":null},"synonyms":[{"name":"NR salvage pathway","type":"exact"},{"name":"nicotinamide riboside salvage pathway","type":"exact"}],"termid":"GO:0034356","terms_by_termid":{"GO:0034356":null}}


id: GO:0045194
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The chemical reactions and pathways resulting in the breakdown of oxidized low-density lipoproteins.","definition_xrefs":["GOC:go_curators"],"gene_count":0,"genotype_count":0,"name":"obsolete oxidized low-density lipoprotein catabolic process (obsolete GO:0045194)","synonyms":[{"name":"Ox-LDL catabolic process","type":"exact"},{"name":"Ox-LDL catabolism","type":"exact"},{"name":"oxidized low-density lipoprotein breakdown","type":"exact"},{"name":"oxidized low-density lipoprotein catabolic process","type":"exact"},{"name":"oxidized low-density lipoprotein catabolism","type":"exact"},{"name":"oxidized low-density lipoprotein degradation","type":"exact"}],"termid":"GO:0045194"}


id: PBO:0077400
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TMEM132E divergent transcript","termid":"PBO:0077400"}


id: PBO:0047104
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"family with sequence similarity 153 member C, pseudogene","termid":"PBO:0047104"}


id: GO:1905083
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of mitochondrial translational elongation.","definition_xrefs":["GOC:TermGenie","PMID:25738458","GO_REF:0000058"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of translational elongation","termid":"GO:0045900"},{"relation_name":"is_a","term_name":"negative regulation of mitochondrial translation","termid":"GO:0070130"},{"relation_name":"is_a","term_name":"regulation of mitochondrial translational elongation","termid":"GO:1905082"},{"relation_name":"negatively_regulates","term_name":"mitochondrial translational elongation","termid":"GO:0070125"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0010467"},{"rel_name":"negatively_regulates","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0140053"}],"interesting_parent_ids":["GO:0008150","GO:0010467","GO:0140053"],"is_obsolete":false,"name":"negative regulation of mitochondrial translational elongation","synonyms":[{"name":"down regulation of mitochondrial translation elongation","type":"exact"},{"name":"down regulation of mitochondrial translational elongation","type":"exact"},{"name":"down-regulation of mitochondrial translation elongation","type":"exact"},{"name":"down-regulation of mitochondrial translational elongation","type":"exact"},{"name":"downregulation of mitochondrial translation elongation","type":"exact"},{"name":"downregulation of mitochondrial translational elongation","type":"exact"},{"name":"inhibition of mitochondrial translation elongation","type":"narrow"},{"name":"inhibition of mitochondrial translational elongation","type":"narrow"},{"name":"negative regulation of mitochondrial translation elongation","type":"exact"}],"termid":"GO:1905083"}


id: GO:0001597
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. (Was not defined before being made obsolete).","definition_xrefs":["GOC:jl"],"gene_count":0,"genotype_count":0,"name":"obsolete apelin-like receptor (obsolete GO:0001597)","synonyms":[{"name":"APJ-like receptor","type":"exact"},{"name":"apelin-like receptor","type":"exact"}],"termid":"GO:0001597"}


id: PBO:0065832
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RAB7B, member RAS oncogene family","termid":"PBO:0065832"}


id: PBO:0017827
data:
  {"annotation_feature_type":"gene","cv_name":"name_description","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Chromosome Segregation in Meiosis","termid":"PBO:0017827"}


id: MOD:02042
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that contains an L-asparagine residue crosslinked to one or more amino acid residues.","definition_xrefs":["PubMed:18688235"],"direct_ancestors":[{"relation_name":"is_a","term_name":"modified L-asparagine residue","termid":"MOD:00903"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"crosslinked L-asparagine residue","synonyms":[{"name":"XlnkAsn","type":"exact"}],"termid":"MOD:02042"}


id: PBO:0040033
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"armadillo repeat containing X-linked 7, pseudogene","termid":"PBO:0040033"}


id: PR:Q09768
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A glutamate--cysteine ligase catalytic subunit that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PANTHER:PTHR11164:SF0","PRO:DNx","OMA:SCHPO00267"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glutamate--cysteine ligase (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC22F3.10c","secondary_identifiers":["UniProtKB:Q09768"],"synonyms":[{"name":"GCS (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-GCLC","type":"exact"},{"name":"gamma-ECS (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"gamma-glutamylcysteine synthetase (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:Q09768"}


id: FYPO:0004960
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of RNA measured in the mitochondria is normal (i.e. indistinguishable from wild type). Total RNA or a specific RNA may be measured.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal RNA level during vegetative growth","termid":"FYPO:0001317"},{"relation_name":"is_a","term_name":"normal level of substance in mitochondrion","termid":"FYPO:0004959"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001312"},{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0000257","FYPO:0001320","FYPO:0000002","FYPO:0001312"],"is_obsolete":false,"name":"normal mitochondrial RNA level","synonyms":[{"name":"normal mitochondrial RNA accumulation","type":"related"},{"name":"normal mitochondrial RNA level during mitotic cell cycle","type":"related"},{"name":"normal mitochondrial RNA level during vegetative growth","type":"exact"},{"name":"normal mitochondrial transcript level","type":"exact"}],"termid":"FYPO:0004960"}


id: PBO:0073087
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SDHA pseudogene 3","termid":"PBO:0073087"}


id: PBO:0064304
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PLLP pseudogene 1","termid":"PBO:0064304"}


id: PBO:0035882
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_protein_N-linked_glycosylation_during_vegetative_growth","termid":"PBO:0035882"}


id: PBO:0029401
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_duration_of_protein_localization_to_cell_division_site","termid":"PBO:0029401"}


id: PBO:0058675
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 6803","termid":"PBO:0058675"}


id: GO:1902218
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of intrinsic apoptotic signaling pathway in response to osmotic stress.","definition_xrefs":["GOC:BHF","GOC:rl","PMID:14569084","GOC:mtg_apoptosis","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of cellular response to osmotic stress","termid":"GO:0106049"},{"relation_name":"is_a","term_name":"regulation of intrinsic apoptotic signaling pathway","termid":"GO:2001242"},{"relation_name":"regulates","term_name":"intrinsic apoptotic signaling pathway in response to osmotic stress","termid":"GO:0008627"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"regulation of intrinsic apoptotic signaling pathway in response to osmotic stress","termid":"GO:1902218"}


id: GO:0042655
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The initiation of the activity of the inactive enzyme JUN kinase kinase kinase (JNKKK) activity.","definition_xrefs":["GOC:bf"],"gene_count":0,"genotype_count":0,"name":"obsolete activation of JNKKK activity (obsolete GO:0042655)","synonyms":[{"name":"activation of JUN kinase kinase kinase activity","type":"exact"},{"name":"positive regulation of JUNKKK activity","type":"broad"}],"termid":"GO:0042655"}


id: PBO:0005286
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"rRNA processing protein Ipi1 (predicted)","termid":"PBO:0005286"}


id: PBO:0056107
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"LYPLA1 pseudogene 2","termid":"PBO:0056107"}


id: PBO:0053564
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 575","termid":"PBO:0053564"}


id: PBO:0048106
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"far upstream element binding protein 1","termid":"PBO:0048106"}


id: PBO:0017448
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-parasitized_by","termid":"PBO:0017448"}


id: GO:1902180
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The chemical reactions and pathways resulting in the breakdown of verruculogen.","definition_xrefs":["GOC:di","GOC:TermGenie","PMID:23649274"],"gene_count":0,"genotype_count":0,"name":"obsolete verruculogen catabolic process (obsolete GO:1902180)","synonyms":[{"name":"verruculogen breakdown","type":"exact"},{"name":"verruculogen catabolism","type":"exact"},{"name":"verruculogen degradation","type":"exact"}],"termid":"GO:1902180"}


id: PBO:0071584
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L36a like","termid":"PBO:0071584"}


id: PBO:0034727
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase family or domain","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"orthologous to S. cereviaie YER035W and YGL222C","termid":"PBO:0034727"}


id: PBO:0056512
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MBNL1 antisense RNA 1","termid":"PBO:0056512"}


id: GO:0018914
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving chlorobenzene, a derivative of benzene with a chlorine atoms attached to the ring. It is a colorless liquid that is manufactured for use as a solvent. It quickly evaporates in the air and is degraded by hydroxyl radicals that are produced photochemically. The gas acts as a source of ClOx, which helps in the breakdown of stratospheric ozone.","direct_ancestors":[{"relation_name":"is_a","term_name":"benzene-containing compound metabolic process","termid":"GO:0042537"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"chlorobenzene metabolic process","secondary_identifiers":["UM-BBD_pathwayID:cb"],"synonyms":[{"name":"chlorobenzene metabolism","type":"exact"}],"termid":"GO:0018914"}


id: SO:0000749
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"The location of DNA that has come from a plasmid sequence.","direct_ancestors":[{"relation_name":"is_a","term_name":"sequence_location","termid":"SO:0000735"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"plasmid_location","synonyms":[{"name":"plasmid location","type":"exact"}],"termid":"SO:0000749"}


id: CHEBI:16236
data:
  {"annotation_feature_type":"gene","cv_name":"chebi_ontology","direct_ancestors":[{"relation_name":"is_a","term_name":"chemical entity","termid":"CHEBI:24431"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ethanol","termid":"CHEBI:16236"}


id: PBO:0017727
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ATP-dependent DNA helicase/ ubiquitin-protein ligase E3 (predicted)","termid":"PBO:0017727"}


id: PBO:0005742
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"heat shock protein Ssa2 (predicted)","termid":"PBO:0005742"}


id: GO:0005656
data:
  {"annotated_genes":["SJAG_02800","SJAG_04210","SJAG_00884","SJAG_03451","SJAG_02394","SJAG_00857","SJAG_01267","SJAG_01354","SJAG_02074","SJAG_02607","SJAG_02348","SJAG_05301","SJAG_03927","SJAG_01762"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[87623,92899,98762,101824,102626,103210,103418,105538,105869,106667,106923,108427,110318,110477],"is_not":false,"summary":null,"term":"GO:0005656"}]},"cv_name":"cellular_component","definition":"A protein-DNA complex assembled at eukaryotic DNA replication origins during late mitosis and G1, allowing the origin to become competent, or 'licensed', for replication. The complex normally includes the origin recognition complex (ORC), Cdc6, Cdt1 and the MiniChromosome Maintenance (Mcm2-7) proteins.","definition_xrefs":["PMID:15222894"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pre-replicative complex","termid":"GO:0036387"},{"relation_name":"is_a","term_name":"nuclear protein-containing complex","termid":"GO:0140513"},{"relation_name":"part_of","term_name":"nucleoplasm","termid":"GO:0005654"}],"gene_count":14,"genes_by_uniquename":{"SJAG_00857":null,"SJAG_00884":null,"SJAG_01267":null,"SJAG_01354":null,"SJAG_01762":null,"SJAG_02074":null,"SJAG_02348":null,"SJAG_02394":null,"SJAG_02607":null,"SJAG_02800":null,"SJAG_03451":null,"SJAG_03927":null,"SJAG_04210":null,"SJAG_05301":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0005654"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005634"}],"interesting_parent_ids":["GO:0032991","GO:0005654","GO:0005575","GO:0005634"],"is_obsolete":false,"name":"nuclear pre-replicative complex","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"eukaryotic pre-replicative complex","type":"exact"},{"name":"pre-RC","type":"related"},{"name":"pre-replicative complex","type":"broad"}],"termid":"GO:0005656","terms_by_termid":{"GO:0005656":null}}


id: FYPO:0004218
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which trimethylation of lysine at position 20 of histone H4 does not occur.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abolished histone methylation during vegetative growth","termid":"FYPO:0002565"},{"relation_name":"is_a","term_name":"abnormal histone H4-K20 methylation during vegetative growth","termid":"FYPO:0004215"},{"relation_name":"is_a","term_name":"abolished protein lysine methylation during vegetative growth","termid":"FYPO:0004488"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0002274"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0002494"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0002494","FYPO:0002274","FYPO:0000002","FYPO:0001985","FYPO:0005447","FYPO:0001320"],"is_obsolete":false,"name":"abolished histone H4-K20 trimethylation during vegetative growth","synonyms":[{"name":"abolished histone H4 K20 trimethylation during vegetative growth","type":"exact"},{"name":"abolished histone H4-K20 trimethylation during mitotic cell cycle","type":"related"},{"name":"abolished histone H4K20me3 during vegetative growth","type":"exact"},{"name":"abolished histone lysine H4 K20 trimethylation during vegetative growth","type":"exact"},{"name":"histone H4-K20 trimethylation abolished during vegetative growth","type":"exact"},{"name":"histone H4-K20 trimethylation absent during vegetative growth","type":"exact"}],"termid":"FYPO:0004218"}


id: GO:0016917
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Combining with gamma-aminobutyric acid (GABA), and transmitting the signal from one side of the membrane to the other to initiate a change in cell activity. (GABA, 4-aminobutyrate) is an amino acid which acts as a neurotransmitter in some organisms.","definition_xrefs":["PMID:10637650","GOC:signaling","GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"transmembrane signaling receptor activity","termid":"GO:0004888"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0038023"}],"interesting_parent_ids":["GO:0038023","GO:0003674"],"is_obsolete":false,"name":"GABA receptor activity","synonyms":[{"name":"4-aminobutanoate receptor activity","type":"exact"},{"name":"4-aminobutyrate receptor activity","type":"exact"},{"name":"GABA binding","type":"exact"},{"name":"gamma-aminobutyrate binding","type":"exact"},{"name":"gamma-aminobutyric acid binding","type":"exact"},{"name":"gamma-aminobutyric acid receptor activity","type":"exact"}],"termid":"GO:0016917"}


id: GO:0036495
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of translation initiation as a result of endoplasmic reticulum stress.","definition_xrefs":["GOC:PARL","GOC:bf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of translational initiation in response to stress","termid":"GO:0032057"},{"relation_name":"is_a","term_name":"regulation of translation initiation in response to endoplasmic reticulum stress","termid":"GO:0036491"},{"relation_name":"is_a","term_name":"negative regulation of translation in response to endoplasmic reticulum stress","termid":"GO:1902010"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0010467"},{"rel_name":"negatively_regulates","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0010467","GO:0008150"],"is_obsolete":false,"name":"negative regulation of translation initiation in response to endoplasmic reticulum stress","synonyms":[{"name":"negative regulation of translation initiation in response to ER stress","type":"related"}],"termid":"GO:0036495"}


id: PBO:0031835
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_nucleolar_morphology","termid":"PBO:0031835"}


id: GO:0051013
data:
  {"annotated_genes":["SJAG_04566","SJAG_01530"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[92116,108032],"is_not":false,"summary":null,"term":"GO:0051013"}]},"cv_name":"biological_process","definition":"The process in which a microtubule is broken down into smaller segments. Severing enzymes remove dimers from the middle of the filament to create new ends, unlike depolymerizing kinesins that use ATP to uncap microtubules at their ends.","definition_xrefs":["GOC:ai","PMID:27037673"],"direct_ancestors":[{"relation_name":"is_a","term_name":"microtubule cytoskeleton organization","termid":"GO:0000226"}],"gene_count":2,"genes_by_uniquename":{"SJAG_01530":null,"SJAG_04566":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0007010"},{"rel_name":"is_a","termid":"GO:0000226"}],"interesting_parent_ids":["GO:0008150","GO:0000226","GO:0007010"],"is_obsolete":false,"name":"microtubule severing","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"microtubule severing activity","type":"related"}],"termid":"GO:0051013","terms_by_termid":{"GO:0051013":null}}


id: PBO:0077910
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TPT1 pseudogene 1","termid":"PBO:0077910"}


id: PBO:0076388
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tachykinin receptor 1","termid":"PBO:0076388"}


id: GO:0010480
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process aimed at the progression of a microsporocyte cell over time, from initial commitment of the cell to a specific fate, to the fully functional differentiated cell. A microsporocyte is a diploid (2n) cell that undergoes meiosis and forms four haploid (1n) microspores; also called microspore mother cell and, in seed plants, pollen mother cell.","definition_xrefs":["CL:0000248","PMID:16751349"],"direct_ancestors":[{"relation_name":"is_a","term_name":"developmental process involved in reproduction","termid":"GO:0003006"},{"relation_name":"is_a","term_name":"sporocyte differentiation","termid":"GO:0048533"},{"relation_name":"part_of","term_name":"anther development","termid":"GO:0048653"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"microsporocyte differentiation","synonyms":[{"name":"pollen mother cell differentiation","type":"related"}],"termid":"GO:0010480"}


id: PBO:0018175
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitotic spindle checkpoint kinase Bub1","termid":"PBO:0018175"}


id: GO:0102972
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: gibberellin A12 + 2-oxoglutarate + O2 = gibberellin A110 + succinate + carbon dioxide.","definition_xrefs":["EC:1.14.11.-","GOC:pz"],"direct_ancestors":[{"relation_name":"is_a","term_name":"2-oxoglutarate-dependent dioxygenase activity","termid":"GO:0016706"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016491","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"gibberellin A12,2-oxoglutarate:oxygen oxidoreductase activity (gibberellin A110-forming)","secondary_identifiers":["MetaCyc:RXN-947"],"termid":"GO:0102972"}


id: GO:0006115
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of ethanol, CH3-CH2-OH, a colorless, water-miscible, flammable liquid produced by alcoholic fermentation.","definition_xrefs":["GOC:ai","ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ethanol metabolic process","termid":"GO:0006067"},{"relation_name":"is_a","term_name":"primary alcohol biosynthetic process","termid":"GO:0034309"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0044281","GO:0008150"],"is_obsolete":false,"name":"ethanol biosynthetic process","synonyms":[{"name":"ethanol anabolism","type":"exact"},{"name":"ethanol biosynthesis","type":"exact"},{"name":"ethanol formation","type":"exact"},{"name":"ethanol synthesis","type":"exact"}],"termid":"GO:0006115"}


id: PBO:0058435
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 4999","termid":"PBO:0058435"}


id: PBO:0091701
data:
  {"annotation_feature_type":"gene","cv_name":"complementation","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"is not complemented by human ATR","termid":"PBO:0091701"}


id: GO:0070744
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A protein complex that is composed of an interleukin-27p28 subunit (product of the IL27 gene) and an EBI3 subunit and is secreted into the extracellular space.","definition_xrefs":["GOC:add","PMID:15999093","PMID:19161428"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein-containing complex","termid":"GO:0032991"},{"relation_name":"part_of","term_name":"extracellular space","termid":"GO:0005615"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005576"},{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005576","GO:0005575","GO:0032991"],"is_obsolete":false,"name":"interleukin-27 complex","synonyms":[{"name":"EBI3","type":"narrow"},{"name":"IL-27 complex","type":"exact"},{"name":"IL27","type":"narrow"},{"name":"p28","type":"narrow"}],"termid":"GO:0070744"}


id: PBO:0039941
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"AT-rich interaction domain 3B","termid":"PBO:0039941"}


id: GO:0003135
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The series of molecular signals generated as a consequence of a fibroblast growth factor receptor binding to one of its physiological ligands that contributes to heart induction.","definition_xrefs":["GOC:mtg_heart"],"direct_ancestors":[{"relation_name":"is_a","term_name":"fibroblast growth factor receptor signaling pathway","termid":"GO:0008543"},{"relation_name":"part_of","term_name":"heart induction","termid":"GO:0003129"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"fibroblast growth factor receptor signaling pathway involved in heart induction","synonyms":[{"name":"fibroblast growth factor receptor signalling pathway involved in heart induction","type":"exact"}],"termid":"GO:0003135"}


id: GO:0102046
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 3,4-dichlorobenzoate + O2 + a reduced electron acceptor = 3,4-dichlorobenzoate-cis-4,5-diol + an oxidized electron acceptor.","definition_xrefs":["PMID:9322760","GOC:pz"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of two atoms of oxygen into one donor","termid":"GO:0016708"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0003824","GO:0016491","GO:0003674"],"is_obsolete":false,"name":"3,4-dichlorobenzoate-4,5-oxygenase activity","secondary_identifiers":["MetaCyc:RXN-10427"],"termid":"GO:0102046"}


id: PBO:0064625
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"inorganic pyrophosphatase 1","termid":"PBO:0064625"}


id: PBO:0017408
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-improper_part_of","termid":"PBO:0017408"}


id: FYPO:0001885
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the phosphorylation of one or more specific proteins, or of specific protein sites, occurs to a lower extent than normal when the cell is subject to salt stress.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased protein phosphorylation during cellular response to osmotic stress","termid":"FYPO:0002376"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0002494"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0002274"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0002274","FYPO:0001985","FYPO:0000002","FYPO:0005447","FYPO:0001320","FYPO:0002494"],"is_obsolete":false,"name":"decreased protein phosphorylation during salt stress","synonyms":[{"name":"decreased protein phosphorylation during salt stress during mitotic cell cycle","type":"related"},{"name":"decreased protein phosphorylation during salt stress during vegetative growth","type":"exact"},{"name":"reduced protein phosphorylation during salt stress","type":"exact"}],"termid":"FYPO:0001885"}


id: PBO:0050803
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"HtrA serine peptidase 3","termid":"PBO:0050803"}


id: PBO:0063934
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Pim-3 proto-oncogene, serine/threonine kinase","termid":"PBO:0063934"}


id: PBO:0088895
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"anoctamin calcium-activated chloride channel OR Ca(2+)-activated phospholipid scramblase involved in ER-plasma membrane tethering Ist2","termid":"PBO:0088895"}


id: PATO:0001859
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A coordination which is relatively high.","definition_xrefs":["PATOC:GVG"],"direct_ancestors":[{"relation_name":"increased_in_magnitude_relative_to","term_name":"normal","termid":"PATO:0000461"},{"relation_name":"is_a","term_name":"coordinated","termid":"PATO:0000769"},{"relation_name":"is_a","term_name":"increased object quality","termid":"PATO:0002305"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"increased coordination","synonyms":[{"name":"high coordination","type":"exact"}],"termid":"PATO:0001859"}


id: PBO:0046506
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glutamate rich 2","termid":"PBO:0046506"}


id: GO:0061921
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The propionylation of peptidyl-lysine.","definition_xrefs":["PMID:17267393"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein acylation","termid":"GO:0043543"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"peptidyl-lysine propionylation","termid":"GO:0061921"}


id: PBO:0082049
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"3,4-dihydroxy-2-butanone-4-phosphate synthase (DHBP synthase); required for riboflavin biosynthesis from ribulose-5-phosphate, also has an unrelated function in mitochondrial respiration","termid":"PBO:0082049"}


id: GO:1990430
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a protein that is part of an extracellular matrix.","definition_xrefs":["PMID:22355679"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein binding","termid":"GO:0005515"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005515"},{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0005488","GO:0005515","GO:0003674"],"is_obsolete":false,"name":"extracellular matrix protein binding","termid":"GO:1990430"}


id: GO:0038022
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Combining with an odorant and transmitting the signal across the membrane by activating an associated G-protein; promotes the exchange of GDP for GTP on the alpha subunit of a heterotrimeric G-protein complex.","definition_xrefs":["GOC:bf","PMID:21041441","GOC:sart"],"direct_ancestors":[{"relation_name":"is_a","term_name":"G protein-coupled receptor activity","termid":"GO:0004930"},{"relation_name":"is_a","term_name":"olfactory receptor activity","termid":"GO:0004984"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0038023"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0038023"],"is_obsolete":false,"name":"G protein-coupled olfactory receptor activity","synonyms":[{"name":"G-protein coupled odorant receptor activity","type":"exact"},{"name":"G-protein coupled olfactory receptor activity","type":"exact"},{"name":"odorant receptor activity, G-protein coupled","type":"narrow"},{"name":"olfactory receptor activity, G-protein coupled","type":"exact"}],"termid":"GO:0038022"}


id: PATO:0002445
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A shape quality inhering in a bearer by virtue of the bearer's being twisted or turned.","definition_xrefs":["freedictionary:freedictionary"],"direct_ancestors":[{"relation_name":"is_a","term_name":"shape","termid":"PATO:0000052"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"torsioned","synonyms":[{"name":"twisted","type":"exact"}],"termid":"PATO:0002445"}


id: PR:Q96TL7
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- rap1 gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q96TL7"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DNA-binding protein rap1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC1778.02","synonyms":[{"name":"Spom972h-rap1","type":"exact"}],"termid":"PR:Q96TL7"}


id: GO:0010911
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the activity of an isomerase. An isomerase catalyzes the geometric or structural changes within one molecule. Isomerase is the systematic name for any enzyme of EC class 5.","definition_xrefs":["GOC:dph","GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of catalytic activity","termid":"GO:0050790"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of isomerase activity","termid":"GO:0010911"}


id: PBO:0057314
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 518a-2","termid":"PBO:0057314"}


id: PBO:0027552
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_chromatin_binding_at_replication_origin","termid":"PBO:0027552"}


id: PBO:0082279
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Anti-repressor that increases 2 micron plasmid copy number; increases 2 micron plasmid copy number by relieving repression of the FLP1 site-specific recombinase caused by the Rep1-Rep2p trascription regulator; also itself repressed by the Rep1p-Rep2p complex","termid":"PBO:0082279"}


id: PBO:0039926
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Rho guanine nucleotide exchange factor 28","termid":"PBO:0039926"}


id: PBO:0082116
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Acetyl-coA synthetase isoform; along with Acs2p, acetyl-coA synthetase isoform is the nuclear source of acetyl-coA for histone acetylation; expressed during growth on nonfermentable carbon sources and under aerobic conditions","termid":"PBO:0082116"}


id: GO:0090022
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate, or extent of neutrophil chemotaxis. Neutrophil chemotaxis is the directed movement of a neutrophil cell, the most numerous polymorphonuclear leukocyte found in the blood, in response to an external stimulus, usually an infection or wounding.","definition_xrefs":["GOC:dph","GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of granulocyte chemotaxis","termid":"GO:0071622"},{"relation_name":"is_a","term_name":"regulation of neutrophil migration","termid":"GO:1902622"},{"relation_name":"regulates","term_name":"neutrophil chemotaxis","termid":"GO:0030593"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of neutrophil chemotaxis","termid":"GO:0090022"}


id: GO:0007048
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. (Was not defined before being made obsolete).","definition_xrefs":["GOC:go_curators"],"gene_count":0,"genotype_count":0,"name":"obsolete oncogenesis (obsolete GO:0007048)","synonyms":[{"name":"oncogenesis","type":"exact"}],"termid":"GO:0007048"}


id: PBO:0047089
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"family with sequence similarity 138 member A","termid":"PBO:0047089"}


id: PBO:0003042
data:
  {"annotation_feature_type":"gene","cv_name":"EC numbers","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"3.5.4.2","termid":"PBO:0003042"}


id: PATO:0001399
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A cellular potency that is the capacity to produce differentiated cell types of all three primary germ layers and extraembryonic cell types.","definition_xrefs":["Wikipedia:http://en.wikipedia.org/wiki/Totipotent"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular potency","termid":"PATO:0001397"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"totipotent","termid":"PATO:0001399"}


id: PBO:0074387
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SMG8 nonsense mediated mRNA decay factor","termid":"PBO:0074387"}


id: GO:0044325
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a transmembrane transporter, a protein or protein complex that enables the transfer of a substance, usually a specific substance or a group of related substances, from one side of a membrane to the other.","definition_xrefs":["GOC:BHF","GOC:jl","PMID:33199372"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein binding","termid":"GO:0005515"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005515"},{"rel_name":"is_a","termid":"GO:0005488"}],"interesting_parent_ids":["GO:0005515","GO:0003674","GO:0005488"],"is_obsolete":false,"name":"transmembrane transporter binding","synonyms":[{"name":"ion channel binding","type":"narrow"}],"termid":"GO:0044325"}


id: PR:Q10355
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"An RNA-binding protein 7 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO02091","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized RNA-binding protein C22E12.02 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC22E12.02","secondary_identifiers":["UniProtKB:Q10355"],"synonyms":[{"name":"Spom972h-RBM7","type":"exact"}],"termid":"PR:Q10355"}


id: PBO:0028586
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abolished_actin_filament_bundle_assembly","termid":"PBO:0028586"}


id: FYPO:0001094
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which occurrence of DNA binding at a replication origin by a gene product is normal (i.e. indistinguishable from wild type). The relevant gene product may be encoded by the mutated gene, or by a different gene.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal double-stranded DNA binding","termid":"FYPO:0007542"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0000653"},{"rel_name":"is_a","termid":"FYPO:0000257"}],"interesting_parent_ids":["FYPO:0000652","FYPO:0000257","FYPO:0000653"],"is_obsolete":false,"name":"normal DNA replication origin binding","synonyms":[{"name":"normal origin binding","type":"exact"}],"termid":"FYPO:0001094"}


id: PBO:0050526
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"haptoglobin","termid":"PBO:0050526"}


id: FYPO:0006813
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which trimethylation of lysine at position 9 of histone H3 in centromere inner repeat regions does not occur.","definition_xrefs":["PMID:30652128","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abolished histone H3-K9 methylation during vegetative growth","termid":"FYPO:0002566"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0002494"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0002274"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0002274","FYPO:0001320","FYPO:0001985","FYPO:0000002","FYPO:0002494","FYPO:0005447"],"is_obsolete":false,"name":"abolished histone H3-K9 trimethylation at centromere inner repeat during vegetative growth","synonyms":[{"name":"abolished histone H3 K9 trimethylation at centromere inner repeat during vegetative growth","type":"exact"},{"name":"abolished histone H3-K9 trimethylation at centromere CENP-A containing region during vegetative growth","type":"related"},{"name":"abolished histone H3-K9 trimethylation at centromere imr during vegetative growth","type":"exact"},{"name":"abolished histone H3-K9 trimethylation at centromere inner repeat during mitotic cell cycle","type":"related"},{"name":"abolished histone H3-K9 trimethylation at centromere inner repeat region during vegetative growth","type":"exact"},{"name":"abolished histone H3K9me3 at centromere inner repeat during vegetative growth","type":"exact"},{"name":"abolished histone lysine H3 K9 trimethylation at centromere inner repeat during vegetative growth","type":"exact"},{"name":"histone H3-K9 trimethylation abolished at centromere inner repeat during vegetative growth","type":"exact"},{"name":"histone H3-K9 trimethylation absent at centromere inner repeat during vegetative growth","type":"exact"}],"termid":"FYPO:0006813"}


id: PBO:0088649
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"meiotic pumilio family RNA-binding protein Mpf2","termid":"PBO:0088649"}


id: PBO:0065562
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"prostaglandin E synthase 3 pseudogene 2","termid":"PBO:0065562"}


id: PATO:0000807
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0000807 proprioreception value (obsolete PATO:0000807)","termid":"PATO:0000807"}


id: PBO:0073221
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"semaphorin 6B","termid":"PBO:0073221"}


id: FYECO:0000030
data:
  {"annotation_feature_type":"gene","cv_name":"fission_yeast_phenotype_condition","definition":"An experimental condition in which ions were added to the assay buffer in excess compared to standard assay buffers.","definition_xrefs":["PomBase:al"],"direct_ancestors":[{"relation_name":"is_a","term_name":"grouping excess","termid":"FYECO:0000109"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"+ ions","termid":"FYECO:0000030"}


id: GO:0098679
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. A regulation of transcription from RNA polymerase II promoter that results in regulation of carbohydrate catabloism.","definition_xrefs":["PMID:16408318"],"gene_count":0,"genotype_count":0,"name":"obsolete regulation of carbohydrate catabolic process by regulation of transcription from RNA polymerase II promoter (obsolete GO:0098679)","synonyms":[{"name":"regulation of carbohydrate catabolism by regulation of transcription from RNA polymerase II promoter","type":"exact"}],"termid":"GO:0098679"}


id: GO:0070599
data:
  {"annotated_genes":["SJAG_02916","SJAG_03057","SJAG_04236","SJAG_00424","SJAG_02278","SJAG_01028","SJAG_04184","SJAG_00610","SJAG_04666"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[70819,77608,73129,72946,71604],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0070600"},{"annotations":[98310,88071,90546,85188],"is_not":false,"rel_names":["regulates"],"summary":null,"term":"GO:0070610"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways involving (1->3)-alpha-D-glucans, compounds composed of glucose residues linked by (1->3)-alpha-D-glucosidic bonds, found in the walls of ascospores.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell wall (1->3)-alpha-glucan metabolic process","termid":"GO:0070597"},{"relation_name":"is_a","term_name":"fungal-type cell wall polysaccharide metabolic process","termid":"GO:0071966"}],"gene_count":9,"genes_by_uniquename":{"SJAG_00424":null,"SJAG_00610":null,"SJAG_01028":null,"SJAG_02278":null,"SJAG_02916":null,"SJAG_03057":null,"SJAG_04184":null,"SJAG_04236":null,"SJAG_04666":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0005975"},{"rel_name":"part_of","termid":"GO:0071554"}],"interesting_parent_ids":["GO:0008150","GO:0071554","GO:0005975"],"is_obsolete":false,"name":"fungal-type cell wall (1->3)-alpha-glucan metabolic process","references_by_uniquename":{"GO_REF:0000107":null,"PMID:21873635":null},"synonyms":[{"name":"ascospore wall 1,3-alpha-glucan metabolic process","type":"exact"},{"name":"ascospore wall 1,3-alpha-glucan metabolism","type":"exact"},{"name":"ascospore wall alpha-1,3 glucan metabolic process","type":"exact"},{"name":"ascospore wall alpha-1,3 glucan metabolism","type":"exact"}],"termid":"GO:0070599","terms_by_termid":{"GO:0070600":null,"GO:0070610":null}}


id: GO:0051777
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: ent-kaurenoate + NADPH + O2 = ent-7-alpha-hydroxykaurenoate + NADP+ + H2O. This is the first of three successive reactions resulting in the oxidation of ent-kaurenoate (ent-kaurenoic acid) to gibberellin 12 (GA12).","definition_xrefs":["EC:1.14.13.79","MetaCyc:RXN1F-159"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen","termid":"GO:0016709"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0016491","GO:0003824"],"is_obsolete":false,"name":"ent-kaurenoate oxidase activity","secondary_identifiers":["RHEA:19241","MetaCyc:1.14.13.79-RXN"],"synonyms":[{"name":"ent-kaur-16-en-19-oate,NADPH:oxygen oxidoreductase (hydroxylating) activity","type":"related"},{"name":"ent-kaurenoic acid oxidase activity","type":"exact"}],"termid":"GO:0051777"}


id: GO:0047664
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction:4-aminoimidazole + H20 = imidazol-4-one + NH3.","definition_xrefs":["RHEA:22348"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines","termid":"GO:0016814"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0016810"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0016787","GO:0003824","GO:0016810"],"is_obsolete":false,"name":"aminoimidazolase activity","secondary_identifiers":["EC:3.5.4.8","MetaCyc:R13-RXN"],"synonyms":[{"name":"4-aminoimidazole aminohydrolase activity","type":"related"},{"name":"4-aminoimidazole hydrolase activity","type":"related"}],"termid":"GO:0047664"}


id: PBO:0063731
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PHACTR3 antisense RNA 1","termid":"PBO:0063731"}


id: PBO:0083325
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Dubious open reading frame; unlikely to encode a functional protein, based on available experimental and comparative sequence data; overlaps ORF SPT15/YER148W","termid":"PBO:0083325"}


id: GO:0031000
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a caffeine stimulus. Caffeine is an alkaloid found in numerous plant species, where it acts as a natural pesticide that paralyzes and kills certain insects feeding upon them.","definition_xrefs":["GOC:ef","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to purine-containing compound","termid":"GO:0014074"},{"relation_name":"is_a","term_name":"response to alkaloid","termid":"GO:0043279"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"response to caffeine","termid":"GO:0031000"}


id: GO:0016048
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The series of events in which a temperature stimulus (hot or cold) is received and converted into a molecular signal.","definition_xrefs":["GOC:hb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to temperature stimulus","termid":"GO:0009266"},{"relation_name":"is_a","term_name":"detection of external stimulus","termid":"GO:0009581"},{"relation_name":"is_a","term_name":"detection of abiotic stimulus","termid":"GO:0009582"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"detection of temperature stimulus","synonyms":[{"name":"detection of temperature","type":"exact"},{"name":"detection of thermal stimulus","type":"exact"},{"name":"perception of temperature","type":"related"}],"termid":"GO:0016048"}


id: PBO:0064951
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PRAME family member 2","termid":"PBO:0064951"}


id: GO:0051734
data:
  {"annotated_genes":["SJAG_02680","SJAG_01979","SJAG_01791"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[70808,83923],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0046404"},{"annotations":[89111],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0051736"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: ATP + 5'-dephosphopolynucleotide = ADP + 5'-phosphopolynucleotide. The polynucleotide may be DNA or RNA.","definition_xrefs":["EC:2.7.1.78"],"direct_ancestors":[{"relation_name":"is_a","term_name":"polynucleotide 5'-hydroxyl-kinase activity","termid":"GO:0051731"}],"gene_count":3,"genes_by_uniquename":{"SJAG_01791":null,"SJAG_01979":null,"SJAG_02680":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016301"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016740"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016301","GO:0016740"],"is_obsolete":false,"name":"ATP-dependent polynucleotide 5'-hydroxyl-kinase activity","references_by_uniquename":{"GO_REF:0000107":null,"PMID:21873635":null},"synonyms":[{"name":"ATP-dependent polynucleotide kinase activity","type":"related"},{"name":"polynucleotide kinase activity","type":"broad"}],"termid":"GO:0051734","terms_by_termid":{"GO:0046404":null,"GO:0051736":null}}


id: PBO:0068416
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribonuclease/angiogenin inhibitor 1","termid":"PBO:0068416"}


id: GO:0034491
data:
  {"annotated_genes":["SJAG_03256"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[99291],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0090516"}]},"cv_name":"biological_process","definition":"The directed movement of neutral amino acids into the vacuole across the vacuolar membrane.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"neutral amino acid transport","termid":"GO:0015804"},{"relation_name":"is_a","term_name":"amino acid transmembrane import into vacuole","termid":"GO:0032975"}],"gene_count":1,"genes_by_uniquename":{"SJAG_03256":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0055085"},{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0051179","GO:0006810","GO:0008150","GO:0055085"],"is_obsolete":false,"name":"neutral amino acid transmembrane import into vacuole","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0034491","terms_by_termid":{"GO:0090516":null}}


id: GO:0072396
data:
  {"annotated_genes":["SJAG_04140","SJAG_04183","SJAG_04332","SJAG_00082","SJAG_01837","SJAG_01805","SJAG_03048"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[85731,89445,111853,97857,106489],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0140429"},{"annotations":[99609],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0072429"},{"annotations":[97866],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0072441"},{"annotations":[97867],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1990820"},{"annotations":[97868,90172],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0072435"}]},"cv_name":"biological_process","definition":"A process that occurs in response to signals generated as a result of cell cycle checkpoint signaling.","definition_xrefs":["GOC:mtg_cell_cycle"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular response to biotic stimulus","termid":"GO:0071216"},{"relation_name":"is_a","term_name":"cellular response to endogenous stimulus","termid":"GO:0071495"}],"gene_count":7,"genes_by_uniquename":{"SJAG_00082":null,"SJAG_01805":null,"SJAG_01837":null,"SJAG_03048":null,"SJAG_04140":null,"SJAG_04183":null,"SJAG_04332":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"response to cell cycle checkpoint signaling","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["GO:0072408","GO:0072405"],"synonyms":[{"name":"G1/S transition checkpoint effector process","type":"related"},{"name":"G2/M transition checkpoint effector process","type":"related"},{"name":"cell cycle checkpoint effector process","type":"exact"},{"name":"response to G1/S transition checkpoint signaling","type":"related"},{"name":"response to G2/M transition checkpoint signaling","type":"related"},{"name":"response to signal involved in G1/S transition checkpoint","type":"related"},{"name":"response to signal involved in G2/M transition checkpoint","type":"related"},{"name":"response to signal involved in cell cycle checkpoint","type":"exact"}],"termid":"GO:0072396","terms_by_termid":{"GO:0072429":null,"GO:0072435":null,"GO:0072441":null,"GO:0140429":null,"GO:1990820":null}}


id: PATO:0002280
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A structural quality inhering in a bearer by virtue of the bearer's possessing a broad surface in articulation with another entity.","definition_xrefs":["PATOC:WD"],"direct_ancestors":[{"relation_name":"is_a","term_name":"articulated with","termid":"PATO:0002278"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"broadly articulated with","termid":"PATO:0002280"}


id: PBO:0063503
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"3-phosphoinositide dependent protein kinase 2, pseudogene","termid":"PBO:0063503"}


id: PBO:0091963
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"snoRNA primary transcript (preducted)","termid":"PBO:0091963"}


id: GO:1903725
data:
  {"annotated_genes":["SJAG_03940","SJAG_02380","SJAG_01906","SJAG_01187"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[106656,110670],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:2001211"},{"annotations":[105066,108000],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0071072"}]},"cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of phospholipid metabolic process.","definition_xrefs":["GOC:TermGenie","PMID:10657240","GO_REF:0000058"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of lipid metabolic process","termid":"GO:0019216"},{"relation_name":"is_a","term_name":"regulation of phosphate metabolic process","termid":"GO:0019220"},{"relation_name":"regulates","term_name":"phospholipid metabolic process","termid":"GO:0006644"}],"gene_count":4,"genes_by_uniquename":{"SJAG_01187":null,"SJAG_01906":null,"SJAG_02380":null,"SJAG_03940":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0006629"}],"interesting_parent_ids":["GO:0008150","GO:0006629"],"is_obsolete":false,"name":"regulation of phospholipid metabolic process","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"regulation of phospholipid metabolism","type":"exact"}],"termid":"GO:1903725","terms_by_termid":{"GO:0071072":null,"GO:2001211":null}}


id: PBO:0058806
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 7848","termid":"PBO:0058806"}


id: PBO:0027202
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-transiently_misoriented_mitotic_spindle","termid":"PBO:0027202"}


id: GO:0072089
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The multiplication or reproduction of stem cells, resulting in the expansion of a stem cell population. A stem cell is a cell that retains the ability to divide and proliferate throughout life to provide progenitor cells that can differentiate into specialized cells.","definition_xrefs":["GOC:mtg_kidney_jan10"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell population proliferation","termid":"GO:0008283"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"stem cell proliferation","termid":"GO:0072089"}


id: PBO:0002021
data:
  {"annotation_feature_type":"gene","cv_name":"EC numbers","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"1.1.1.289","termid":"PBO:0002021"}


id: PBO:0000455
data:
  {"annotation_feature_type":"gene","cv_name":"EC numbers","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"2.3.1.-","termid":"PBO:0000455"}


id: GO:0102980
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 2-butyl-4-hydroxy-5-methyl-3(2H)-furanone + NADP = (2E)-2-butylidene-4-hydroxy-5-methyl-3(2H)-furanone + NADPH + H+.","definition_xrefs":["EC:1.3.1.-","GOC:pz"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor","termid":"GO:0016628"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016491","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"2-butyl-4-hydroxy-5-methyl-3(2H)-furanoneoxidoreductase activity","secondary_identifiers":["MetaCyc:RXN-9565"],"termid":"GO:0102980"}


id: GO:0018577
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: catechol + O2 = 2-hydroxymuconate semialdehyde.","definition_xrefs":["EC:1.13.11.2"],"direct_ancestors":[{"relation_name":"is_a","term_name":"catechol dioxygenase activity","termid":"GO:0019114"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016491","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"catechol 2,3-dioxygenase activity","secondary_identifiers":["RHEA:17337","MetaCyc:CATECHOL-23-DIOXYGENASE-RXN","UM-BBD_enzymeID:e0156"],"synonyms":[{"name":"2,3-pyrocatechase activity","type":"related"},{"name":"catechol 2,3-oxygenase","type":"related"},{"name":"catechol oxygenase","type":"related"},{"name":"catechol:oxygen 2,3-oxidoreductase (decyclizing)","type":"related"},{"name":"cato2ase activity","type":"related"},{"name":"metapyrocatechase activity","type":"related"},{"name":"pyrocatechol 2,3-dioxygenase","type":"related"}],"termid":"GO:0018577"}


id: PBO:0038646
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"acyl-CoA oxidase 1","termid":"PBO:0038646"}


id: GO:0014836
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which the developmental fate of a satellite cell becomes restricted such that it will develop into a myoblast. This occurs as part of skeletal muscle regeneration. A myoblast is a mononucleate cell type that, by fusion with other myoblasts, gives rise to the myotubes that eventually develop into skeletal muscle fibers.","definition_xrefs":["PMID:16607119","GOC:ef","CL:0000056","GOC:mtg_muscle"],"direct_ancestors":[{"relation_name":"is_a","term_name":"myoblast fate commitment","termid":"GO:0048625"},{"relation_name":"part_of","term_name":"myoblast differentiation involved in skeletal muscle regeneration","termid":"GO:0014835"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"myoblast fate commitment involved in skeletal muscle regeneration","termid":"GO:0014836"}


id: FYPO:0004679
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of polyadenylated 25S rRNA measured in a cell is too low to detect.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"RNA absent from cell during vegetative growth","termid":"FYPO:0003161"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"output_of","termid":"FYPO:0006551"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0006551","FYPO:0001320","FYPO:0001985","FYPO:0000002"],"is_obsolete":false,"name":"polyadenylated 25S rRNA absent from cell","synonyms":[{"name":"polyadenylated 25S rRNA absent from cell during mitotic cell cycle","type":"related"},{"name":"polyadenylated 25S rRNA absent from cell during vegetative growth","type":"exact"},{"name":"polyadenylated 25S rRNA transcripts absent from cell during vegetative growth","type":"exact"},{"name":"undetectable polyadenylated 25S rRNA level during vegetative growth","type":"exact"}],"termid":"FYPO:0004679"}


id: GO:0050734
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the transfer of a hydroxycinnamoyl group to an acceptor molecule.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"acyltransferase activity, transferring groups other than amino-acyl groups","termid":"GO:0016747"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016746"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0016740","GO:0016746","GO:0003824"],"is_obsolete":false,"name":"hydroxycinnamoyltransferase activity","termid":"GO:0050734"}


id: GO:0007085
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. (Was not defined before being made obsolete).","definition_xrefs":["GOC:ai"],"gene_count":0,"genotype_count":0,"name":"obsolete nuclear membrane vesicle binding to chromatin (obsolete GO:0007085)","synonyms":[{"name":"nuclear membrane vesicle binding to chromatin","type":"exact"}],"termid":"GO:0007085"}


id: PR:Q9HFE8
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- tra1 gene.","definition_xrefs":["UniProtKB:Q9HFE8","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transcription-associated protein 1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBP16F5.03c","synonyms":[{"name":"Spom972h-tra1","type":"exact"}],"termid":"PR:Q9HFE8"}


id: FYPO:0004583
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which meiotic chromosome condensation is abnormal.","definition_xrefs":["PomBase:mah","PMID:23263988"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal chromosome condensation","termid":"FYPO:0000159"},{"relation_name":"is_a","term_name":"abnormal meiotic chromosome organization","termid":"FYPO:0006759"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000641"}],"interesting_parent_ids":["FYPO:0000641","FYPO:0001985","FYPO:0000631","FYPO:0000002","FYPO:0005447"],"is_obsolete":false,"name":"abnormal meiotic chromosome condensation","synonyms":[{"name":"abnormal chromosome condensation during meiosis I","type":"exact"},{"name":"abnormal chromosome condensation during meiotic cell cycle","type":"related"}],"termid":"FYPO:0004583"}


id: PBO:0089525
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"U5 snRNP complex ATPase subunit Brr2","termid":"PBO:0089525"}


id: GO:0106035
data:
  {"annotated_genes":["SJAG_02866","SJAG_02895","SJAG_04016","SJAG_01147","SJAG_00040","SJAG_03532","SJAG_02497","SJAG_03222","SJAG_02745","SJAG_03913"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[70918,78618,83448,84729,91252,95547,99719,100194,109987,111306],"is_not":false,"summary":null,"term":"GO:0106035"}]},"cv_name":"biological_process","definition":"The transfer of an assembled 4Fe-4S] cluster from a scaffold protein to an acceptor protein that contributes to the attainment of the full functional capacity of a protein.","definition_xrefs":["PMID:23615440"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein maturation by iron-sulfur cluster transfer","termid":"GO:0097428"}],"gene_count":10,"genes_by_uniquename":{"SJAG_00040":null,"SJAG_01147":null,"SJAG_02497":null,"SJAG_02745":null,"SJAG_02866":null,"SJAG_02895":null,"SJAG_03222":null,"SJAG_03532":null,"SJAG_03913":null,"SJAG_04016":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0051604"}],"interesting_parent_ids":["GO:0010467","GO:0008150","GO:0051604"],"is_obsolete":false,"name":"protein maturation by [4Fe-4S] cluster transfer","references_by_uniquename":{"GO_REF:0000107":null,"PMID:21873635":null},"termid":"GO:0106035","terms_by_termid":{"GO:0106035":null}}


id: PATO:0001591
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A surface shape quality inhering in a bearer by virtue of the bearer's exhibiting a degree of bending.","definition_xrefs":["WordNet:WordNet"],"direct_ancestors":[{"relation_name":"is_a","term_name":"shape","termid":"PATO:0000052"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"curvature","termid":"PATO:0001591"}


id: GO:1904751
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of protein localization to nucleolus.","definition_xrefs":["GOC:nc","GOC:BHF","GOC:BHF_telomere","PMID:24415760","GOC:TermGenie","GO_REF:0000058"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of protein localization to nucleus","termid":"GO:1900182"},{"relation_name":"is_a","term_name":"regulation of protein localization to nucleolus","termid":"GO:1904749"},{"relation_name":"positively_regulates","term_name":"protein localization to nucleolus","termid":"GO:1902570"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of protein localization to nucleolus","synonyms":[{"name":"activation of protein localisation in nucleolus","type":"narrow"},{"name":"activation of protein localisation to nucleolus","type":"narrow"},{"name":"activation of protein localization in nucleolus","type":"narrow"},{"name":"activation of protein localization to nucleolus","type":"narrow"},{"name":"positive regulation of protein localisation in nucleolus","type":"exact"},{"name":"positive regulation of protein localisation to nucleolus","type":"exact"},{"name":"positive regulation of protein localization in nucleolus","type":"exact"},{"name":"up regulation of protein localisation in nucleolus","type":"exact"},{"name":"up regulation of protein localisation to nucleolus","type":"exact"},{"name":"up regulation of protein localization in nucleolus","type":"exact"},{"name":"up regulation of protein localization to nucleolus","type":"exact"},{"name":"up-regulation of protein localisation in nucleolus","type":"exact"},{"name":"up-regulation of protein localisation to nucleolus","type":"exact"},{"name":"up-regulation of protein localization in nucleolus","type":"exact"},{"name":"up-regulation of protein localization to nucleolus","type":"exact"},{"name":"upregulation of protein localisation in nucleolus","type":"exact"},{"name":"upregulation of protein localisation to nucleolus","type":"exact"},{"name":"upregulation of protein localization in nucleolus","type":"exact"},{"name":"upregulation of protein localization to nucleolus","type":"exact"}],"termid":"GO:1904751"}


id: GO:1900584
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of o-orsellinic acid.","definition_xrefs":["GOC:di","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"secondary metabolite biosynthetic process","termid":"GO:0044550"},{"relation_name":"is_a","term_name":"phenol-containing compound biosynthetic process","termid":"GO:0046189"},{"relation_name":"is_a","term_name":"monocarboxylic acid biosynthetic process","termid":"GO:0072330"},{"relation_name":"is_a","term_name":"o-orsellinic acid metabolic process","termid":"GO:1900582"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0019748"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0008150","GO:0019748","GO:0044281"],"is_obsolete":false,"name":"o-orsellinic acid biosynthetic process","synonyms":[{"name":"o-orsellinic acid anabolism","type":"exact"},{"name":"o-orsellinic acid biosynthesis","type":"exact"},{"name":"o-orsellinic acid formation","type":"exact"},{"name":"o-orsellinic acid synthesis","type":"exact"}],"termid":"GO:1900584"}


id: PBO:0057936
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 3662","termid":"PBO:0057936"}


id: GO:0045876
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of sister chromatid cohesion.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of sister chromatid cohesion","termid":"GO:0007063"},{"relation_name":"is_a","term_name":"positive regulation of cell cycle process","termid":"GO:0090068"},{"relation_name":"is_a","term_name":"positive regulation of chromosome organization","termid":"GO:2001252"},{"relation_name":"positively_regulates","term_name":"sister chromatid cohesion","termid":"GO:0007062"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"positively_regulates","termid":"GO:0007049"},{"rel_name":"regulates","termid":"GO:0007049"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0007049","GO:0008150"],"is_obsolete":false,"name":"positive regulation of sister chromatid cohesion","synonyms":[{"name":"activation of sister chromatid cohesion","type":"narrow"},{"name":"stimulation of sister chromatid cohesion","type":"narrow"},{"name":"up regulation of sister chromatid cohesion","type":"exact"},{"name":"up-regulation of sister chromatid cohesion","type":"exact"},{"name":"upregulation of sister chromatid cohesion","type":"exact"}],"termid":"GO:0045876"}


id: PBO:0075372
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SOX9 antisense RNA 1","termid":"PBO:0075372"}


id: GO:0031635
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"An adenylate cyclase-inhibiting G protein-coupled receptor signaling pathway initiated by an opioid binding to its receptor, and ending with the regulation of a downstream cellular process.","definition_xrefs":["GOC:dph","GOC:mah","GOC:signaling","GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"adenylate cyclase-inhibiting G protein-coupled receptor signaling pathway","termid":"GO:0007193"},{"relation_name":"is_a","term_name":"G protein-coupled opioid receptor signaling pathway","termid":"GO:0038003"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"adenylate cyclase-inhibiting opioid receptor signaling pathway","synonyms":[{"name":"inhibition of adenylate cyclase activity by opioid receptor signaling pathway","type":"related"},{"name":"inhibition of adenylate cyclase activity by opioid receptor signalling pathway","type":"related"},{"name":"opioid receptor, adenylate cyclase inhibiting pathway","type":"exact"}],"termid":"GO:0031635"}


id: PBO:0061589
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"non-coding transcript regulating alternative splicing","termid":"PBO:0061589"}


id: PBO:0080586
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"WD repeat domain 11","termid":"PBO:0080586"}


id: PBO:0011111
data:
  {"annotation_feature_type":"gene","cv_name":"warning","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"deletion library version 2. has incorrect strain","termid":"PBO:0011111"}


id: PBO:0059965
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MT-ND3 pseudogene 10","termid":"PBO:0059965"}


id: PBO:0078051
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"T cell receptor alpha joining 41","termid":"PBO:0078051"}


id: PBO:0109104
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ZNF217 antisense RNA 1","termid":"PBO:0109104"}


id: PBO:0078900
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-Gln (anticodon CTG) 9-1","termid":"PBO:0078900"}


id: PBO:0068424
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA binding protein with serine rich domain 1","termid":"PBO:0068424"}


id: PBO:0091730
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"centromeric lncRNA nam6","termid":"PBO:0091730"}


id: PBO:0071676
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L37 pseudogene 8","termid":"PBO:0071676"}


id: PBO:0047417
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"F-box and WD repeat domain containing 8","termid":"PBO:0047417"}


id: GO:0051428
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a receptor for a peptide hormone.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hormone receptor binding","termid":"GO:0051427"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0005515"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0005515","GO:0005488","GO:0003674"],"is_obsolete":false,"name":"peptide hormone receptor binding","synonyms":[{"name":"polypeptide hormone receptor binding","type":"exact"}],"termid":"GO:0051428"}


id: GO:0002169
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A mitochondrial protein complex which is capable of 3-methylcrotonyl-CoA carboxylase activity. In mammals, at least, consists as a dodecamer of 6 alpha and 6 beta subunits. MCCC-alpha has a covalently bound biotin essential for the ATP-dependent carboxylation. MCCC-beta possesses carboxyltransferase activity which presumably is essential for binding to 3-methylcrotonyl-CoA.","definition_xrefs":["GOC:hjd","PMID:15868465","GOC:bf","PMID:17360195","PMID:22869039"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mitochondrial protein-containing complex","termid":"GO:0098798"},{"relation_name":"is_a","term_name":"methylcrotonoyl-CoA carboxylase complex","termid":"GO:1905202"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0005739"},{"rel_name":"part_of","termid":"GO:0005737"}],"interesting_parent_ids":["GO:0032991","GO:0005575","GO:0005739","GO:0005737"],"is_obsolete":false,"name":"3-methylcrotonyl-CoA carboxylase complex, mitochondrial","synonyms":[{"name":"mitochondrial 3-methylcrotonyl-CoA carboxylase holoenzyme","type":"exact"},{"name":"mitochondrial MCCC complex","type":"exact"},{"name":"mitochondrial methylcrotonoyl-CoA carboxylase complex","type":"exact"}],"termid":"GO:0002169"}


id: PBO:0072463
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein S29 pseudogene 27","termid":"PBO:0072463"}


id: GO:0048167
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process that modulates synaptic plasticity, the ability of synapses to change as circumstances require. They may alter function, such as increasing or decreasing their sensitivity, or they may increase or decrease in actual numbers.","definition_xrefs":["PMID:11891290","GOC:jid","GOC:tb","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"modulation of chemical synaptic transmission","termid":"GO:0050804"},{"relation_name":"is_a","term_name":"regulation of biological quality","termid":"GO:0065008"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"regulation of synaptic plasticity","termid":"GO:0048167"}


id: PR:O14267
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPAC7D4.12c gene.","definition_xrefs":["PRO:DNx","UniProtKB:O14267"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized UPF0442 protein C7D4.12c (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC7D4.12c","synonyms":[{"name":"Spom972h-SPAC7D4.12c","type":"exact"}],"termid":"PR:O14267"}


id: PBO:0048073
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ferritin heavy chain 1 pseudogene 24","termid":"PBO:0048073"}


id: PBO:0045949
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"EGF like and EMI domain containing 1, pseudogene","termid":"PBO:0045949"}


id: PBO:0089574
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Ras GAP Gap1","termid":"PBO:0089574"}


id: GO:0106399
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: an acyl-coenzyme A + H2O = adenosine 3',5'-bisphosphate + an acyl-4'-phosphopantetheine + 2 H+.","definition_xrefs":["PMID:32915949"],"gene_count":0,"genotype_count":0,"name":"obsolete acyl-coenzyme A diphosphatase activity (obsolete GO:0106399)","synonyms":[{"name":"acyl-CoA diphosphatase activity","type":"exact"},{"name":"acyl-CoA pyrophosphatase activity","type":"exact"},{"name":"acyl-coenzyme A pyrophosphatase activity","type":"exact"}],"termid":"GO:0106399"}


id: GO:0018316
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The oxidation of two peptidyl-cysteine residues to form a peptidyl-L-cystine (dicysteine) in which segments of peptide chain are linked by a disulfide bond; the cross-link may be between different or the same peptide chain.","definition_xrefs":["RESID:AA0025"],"direct_ancestors":[{"relation_name":"is_a","term_name":"peptide cross-linking","termid":"GO:0018149"},{"relation_name":"is_a","term_name":"peptidyl-cysteine modification","termid":"GO:0018198"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"peptide cross-linking via L-cystine","termid":"GO:0018316"}


id: GO:1903847
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of aorta morphogenesis.","definition_xrefs":["GOC:BHF_miRNA","GO_REF:0000058","GOC:BHF","GOC:rph","PMID:22269326","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of artery morphogenesis","termid":"GO:1905651"},{"relation_name":"regulates","term_name":"aorta morphogenesis","termid":"GO:0035909"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of aorta morphogenesis","termid":"GO:1903847"}


id: PBO:0029900
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-inviable_elongated_mononucleate_vegetative_cell_with_mislocalized_nucleus","termid":"PBO:0029900"}


id: PBO:0080368
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"vanin 2","termid":"PBO:0080368"}


id: SO:0001496
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"The telomeric repeat is a repeat region, part of the chromosome, which in yeast, is a G-rich terminal sequence of the form (TG(1-3))n or more precisely ((TG)(1-6)TG(2-3))n.","definition_xrefs":["PMID:8720065"],"direct_ancestors":[{"relation_name":"is_a","term_name":"repeat_region","termid":"SO:0000657"},{"relation_name":"part_of","term_name":"telomere","termid":"SO:0000624"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"telomeric_repeat","synonyms":[{"name":"INSDC_feature:repeat_region","type":"broad"},{"name":"INSDC_qualifier:telomeric_repeat","type":"exact"},{"name":"telomeric repeat","type":"exact"}],"termid":"SO:0001496"}


id: MOD:01468
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-cysteine residue to L-selenocysteinyl molybdenum bis(molybdopterin guanine dinucleotide) (not known as a natural, post-translational modification process).","definition_xrefs":["Unimod:415","PubMed:2211698","RESID:AA0248#CYS","PubMed:14235557","PubMed:8052647","PubMed:9036855"],"direct_ancestors":[{"relation_name":"is_a","term_name":"molybdenum pterin containing modification","termid":"MOD:00744"},{"relation_name":"is_a","term_name":"metal or metal cluster coordinated L-selenocysteine residue","termid":"MOD:02073"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"L-selenocysteinyl molybdenum bis(molybdopterin guanine dinucleotide) (Cys)","synonyms":[{"name":"2-amino-5,6-dimercapto-7-methyl-3,7,8a,9-tetrahydro-8-oxa-1,3,9,10-tetraazaanthracen-4-one guanosine dinucleotide","type":"exact"},{"name":"L-selenocysteinyl molybdenum bis(molybdopterin guanine dinucleotide)","type":"exact"},{"name":"MolybdopterinGD+Delta:S(-1)Se(1)","type":"related"},{"name":"bis[8-amino-1a,2,4a,5,6,7,10-heptahydro-2-(trihydrogen diphosphate 5'-ester with guanosine)methyl-6-oxo-3,4-disulfanyl-pteridino[6,7-5,6]pyranoato-S3,S4]-selenocysteinyl-Se-molybdenum","type":"exact"},{"name":"formate dehydrogenase selenocysteine molybdenum cofactor","type":"exact"},{"name":"molybdopterin-se","type":"related"}],"termid":"MOD:01468"}


id: GO:0001891
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"An invagination of the cell membrane formed by an actin dependent process during phagocytosis. Following internalization it is converted into a phagosome.","definition_xrefs":["PMID:10358769"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular anatomical entity","termid":"GO:0110165"},{"relation_name":"part_of","term_name":"plasma membrane","termid":"GO:0005886"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005886"}],"interesting_parent_ids":["GO:0005575","GO:0005886"],"is_obsolete":false,"name":"phagocytic cup","termid":"GO:0001891"}


id: GO:0045605
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of epidermal cell differentiation.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of epithelial cell differentiation","termid":"GO:0030857"},{"relation_name":"is_a","term_name":"regulation of epidermal cell differentiation","termid":"GO:0045604"},{"relation_name":"is_a","term_name":"negative regulation of epidermis development","termid":"GO:0045683"},{"relation_name":"negatively_regulates","term_name":"epidermal cell differentiation","termid":"GO:0009913"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of epidermal cell differentiation","synonyms":[{"name":"down regulation of epidermal cell differentiation","type":"exact"},{"name":"down-regulation of epidermal cell differentiation","type":"exact"},{"name":"downregulation of epidermal cell differentiation","type":"exact"},{"name":"inhibition of epidermal cell differentiation","type":"narrow"},{"name":"negative regulation of hypodermal cell differentiation","type":"related"}],"termid":"GO:0045605"}


id: PBO:0109189
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cystathionine beta-lyase","termid":"PBO:0109189"}


id: PBO:0054636
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2041","termid":"PBO:0054636"}


id: PBO:0109651
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CDKN2A antisense RNA 1","termid":"PBO:0109651"}


id: FYPO:0007422
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A microtubule cytoskeleton organization phenotype observed in the vegetative growth phase of the life cycle in which nucleation of spindle microtubules from the spindle pole body (SPB) does not occur.","definition_xrefs":["PMID:19942852","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal microtubule nucleation during vegetative growth","termid":"FYPO:0005692"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000054"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001985","FYPO:0000054","FYPO:0005447","FYPO:0001320"],"is_obsolete":false,"name":"abolished mitotic spindle microtubule nucleation from spindle pole body","synonyms":[{"name":"abolished mitotic spindle microtubule nucleation from SPB","type":"exact"},{"name":"abolished mitotic spindle microtubule nucleation from spindle pole body during mitotic M phase","type":"exact"},{"name":"mitotic spindle microtubule nucleation from spindle pole body abolished","type":"exact"}],"termid":"FYPO:0007422"}


id: PBO:0061273
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NOX4 pseudogene 1","termid":"PBO:0061273"}


id: GO:1900108
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of nodal signaling pathway.","definition_xrefs":["GOC:BHF","GOC:TermGenie","GOC:vk"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of activin receptor signaling pathway","termid":"GO:0032926"},{"relation_name":"is_a","term_name":"regulation of nodal signaling pathway","termid":"GO:1900107"},{"relation_name":"negatively_regulates","term_name":"nodal signaling pathway","termid":"GO:0038092"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"negatively_regulates","termid":"GO:0023052"},{"rel_name":"regulates","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"negative regulation of nodal signaling pathway","synonyms":[{"name":"down regulation of nodal signaling","type":"exact"},{"name":"down regulation of nodal signaling pathway","type":"exact"},{"name":"down-regulation of nodal signaling","type":"exact"},{"name":"down-regulation of nodal signaling pathway","type":"exact"},{"name":"downregulation of nodal signaling","type":"exact"},{"name":"downregulation of nodal signaling pathway","type":"exact"},{"name":"inhibition of nodal signaling","type":"narrow"},{"name":"inhibition of nodal signaling pathway","type":"narrow"},{"name":"negative regulation of nodal signaling","type":"exact"},{"name":"negative regulation of nodal signalling pathway","type":"exact"}],"termid":"GO:1900108"}


id: PBO:0038365
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-has_primary_substance_added","termid":"PBO:0038365"}


id: PBO:0049463
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glycophorin A (MNS blood group)","termid":"PBO:0049463"}


id: PATO:0000525
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0000525 soil composition sensitivity value (obsolete PATO:0000525)","termid":"PATO:0000525"}


id: GO:0016608
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"The action characteristic of growth hormone-releasing hormone, any of a family of peptide hormones that act on the anterior pituitary to stimulate the secretion of growth hormone and exert a trophic effect on the gland.","definition_xrefs":["ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hormone activity","termid":"GO:0005179"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005515"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0140677"},{"rel_name":"is_a","termid":"GO:0098772"}],"interesting_parent_ids":["GO:0098772","GO:0005515","GO:0005488","GO:0003674","GO:0140677"],"is_obsolete":false,"name":"growth hormone-releasing hormone activity","synonyms":[{"name":"GHRF activity","type":"exact"},{"name":"GHRH activity","type":"exact"}],"termid":"GO:0016608"}


id: PATO:0000518
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0000518 chemical sensitivity value (obsolete PATO:0000518)","termid":"PATO:0000518"}


id: FYPO:0006682
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to chromatin at centromere outer repeat regions is increased.","definition_xrefs":["PMID:19111658","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased protein localization to centromere outer repeat","termid":"FYPO:0003009"},{"relation_name":"is_a","term_name":"increased protein localization to chromatin","termid":"FYPO:0003011"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000138"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0001320","FYPO:0000002","FYPO:0000138","FYPO:0001985"],"is_obsolete":false,"name":"increased protein localization to chromatin at centromere outer repeat","synonyms":[{"name":"increased protein localisation to chromatin at centromere outer repeat","type":"exact"},{"name":"increased protein localization to chromatin at centromere otr","type":"exact"},{"name":"increased protein localization to chromatin at centromere outer repeat during mitotic cell cycle","type":"related"},{"name":"increased protein localization to chromatin at centromere outer repeat during vegetative growth","type":"exact"},{"name":"increased protein localization to chromatin at pericentric region during vegetative growth","type":"related"},{"name":"increased protein localization to chromatin at pericentromeric region during vegetative growth","type":"related"}],"termid":"FYPO:0006682"}


id: FYPO:0007131
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to the plus ends end of microtubules is increased.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased protein localization to microtubule cytoskeleton during vegetative growth","termid":"FYPO:0000932"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001985","FYPO:0005447","FYPO:0001320","FYPO:0000138"],"is_obsolete":false,"name":"increased protein localization to microtubule plus-end","synonyms":[{"name":"increased protein localisation to microtubule plus-end","type":"exact"},{"name":"increased protein localization to microtubule plus end","type":"exact"},{"name":"increased protein localization to microtubule plus-end during mitotic cell cycle","type":"related"},{"name":"increased protein localization to microtubule plus-end during vegetative growth","type":"exact"}],"termid":"FYPO:0007131"}


id: PBO:0059547
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrially encoded tRNA-Asn (AAU/C)","termid":"PBO:0059547"}


id: PBO:0029156
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_telomere_length","termid":"PBO:0029156"}


id: GO:0060009
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of a Sertoli cell over time, from its formation to the mature structure. Cell development does not include the steps involved in committing a cell to a Sertoli cell fate.","definition_xrefs":["GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"epithelial cell development","termid":"GO:0002064"},{"relation_name":"is_a","term_name":"developmental process involved in reproduction","termid":"GO:0003006"},{"relation_name":"part_of","term_name":"Sertoli cell differentiation","termid":"GO:0060008"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"Sertoli cell development","termid":"GO:0060009"}


id: GO:1900930
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of L-tyrosine import into the cell.","definition_xrefs":["GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of transmembrane transport","termid":"GO:0034763"},{"relation_name":"is_a","term_name":"negative regulation of amino acid transport","termid":"GO:0051956"},{"relation_name":"is_a","term_name":"regulation of L-tyrosine import across plasma membrane","termid":"GO:1900929"},{"relation_name":"negatively_regulates","term_name":"L-tyrosine import across plasma membrane","termid":"GO:1903808"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"negatively_regulates","termid":"GO:0055085"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0055085"},{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"negatively_regulates","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0055085","GO:0006810","GO:0008150"],"is_obsolete":false,"name":"negative regulation of L-tyrosine import across plasma membrane","synonyms":[{"name":"down regulation of L-tyrosine import","type":"exact"},{"name":"down regulation of L-tyrosine uptake","type":"related"},{"name":"down-regulation of L-tyrosine import","type":"exact"},{"name":"down-regulation of L-tyrosine uptake","type":"related"},{"name":"downregulation of L-tyrosine import","type":"exact"},{"name":"downregulation of L-tyrosine uptake","type":"related"},{"name":"inhibition of L-tyrosine import","type":"narrow"},{"name":"inhibition of L-tyrosine uptake","type":"related"},{"name":"negative regulation of L-tyrosine import","type":"broad"},{"name":"negative regulation of L-tyrosine uptake","type":"related"}],"termid":"GO:1900930"}


id: PBO:0084915
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Mitotic spindle protein; interacts with components of the Dam1 (DASH) complex, its effector Sli15p, and microtubule-associated protein Bim1p; also localizes to nuclear microtubules and to the bud neck in a ring-shaped structure; inhibits dynein function","termid":"PBO:0084915"}


id: GO:0048693
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of collateral sprouting of an injured axon.","definition_xrefs":["GOC:dph","GOC:jid","GOC:lm","GOC:dgh"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of collateral sprouting","termid":"GO:0048670"},{"relation_name":"is_a","term_name":"regulation of sprouting of injured axon","termid":"GO:0048686"},{"relation_name":"regulates","term_name":"collateral sprouting of injured axon","termid":"GO:0048674"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of collateral sprouting of injured axon","termid":"GO:0048693"}


id: PBO:0089642
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"coatomer delta subunit Ret2","termid":"PBO:0089642"}


id: SO:0002066
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A deletion of a mobile element when comparing a reference sequence (has mobile element) to a individual sequence (does not have mobile element).","definition_xrefs":["NCBI:th"],"direct_ancestors":[{"relation_name":"is_a","term_name":"deletion","termid":"SO:0000159"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mobile_element_deletion","synonyms":[{"name":"mobile element deletion","type":"exact"}],"termid":"SO:0002066"}


id: PBO:0076712
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transcription factor 15","termid":"PBO:0076712"}


id: PBO:0056598
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"malate dehydrogenase 2","termid":"PBO:0056598"}


id: PBO:0041473
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chromosome 11 open reading frame 52","termid":"PBO:0041473"}


id: PBO:0044332
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CYCS pseudogene 14","termid":"PBO:0044332"}


id: PBO:0067698
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 5.8S ribosomal pseudogene 6","termid":"PBO:0067698"}


id: PBO:0070507
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L6 pseudogene 6","termid":"PBO:0070507"}


id: PBO:0044331
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CYCS pseudogene 12","termid":"PBO:0044331"}


id: FYPO:0000812
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which vacuole organization is abnormal. Vacuole organization results in the assembly, arrangement of constituent parts, or disassembly of a vacuole.","definition_xrefs":["PomBase:mah","GO:0007033"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal cellular component organization during vegetative growth","termid":"FYPO:0001353"},{"relation_name":"is_a","term_name":"abnormal vacuole organization","termid":"FYPO:0002803"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0000002","FYPO:0001985","FYPO:0001320"],"is_obsolete":false,"name":"abnormal vacuole organization during vegetative growth","synonyms":[{"name":"abnormal vacuolar organisation during vegetative growth","type":"exact"},{"name":"abnormal vacuolar organization during vegetative growth","type":"exact"},{"name":"abnormal vacuole organisation during vegetative growth","type":"exact"},{"name":"abnormal vacuole organization during mitotic cell cycle","type":"related"}],"termid":"FYPO:0000812"}


id: PBO:0027373
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_glutathione_transferase_activity","termid":"PBO:0027373"}


id: SO:3000000
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A gene component region which acts as a recombinational unit of a gene whose functional form is generated through somatic recombination.","definition_xrefs":["GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"gene_component_region","termid":"SO:0000842"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"gene_segment","synonyms":[{"name":"gene segment","type":"exact"}],"termid":"SO:3000000"}


id: GO:0042716
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A pigment-bearing structure that is derived from the cytoplasmic membrane, sometimes consisting of simple invaginations and sometimes a complete vesicle. This component is found in certain photosynthetic bacteria and cyanobacteria.","definition_xrefs":["ISBN:0395825172","PMID:11867431","GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular anatomical entity","termid":"GO:0110165"},{"relation_name":"part_of","term_name":"cytoplasm","termid":"GO:0005737"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005737","GO:0005575"],"is_obsolete":false,"name":"plasma membrane-derived chromatophore","synonyms":[{"name":"chromatophore vesicle","type":"related"}],"termid":"GO:0042716"}


id: PBO:0045581
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"deoxyuridine triphosphatase pseudogene 3","termid":"PBO:0045581"}


id: FYPO:0007493
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype in which the amount of alpha-D-glucan measured in the spore wall is lower than normal.","definition_xrefs":["PMID:16420355","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased cell wall alpha-glucan level","termid":"FYPO:0001081"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0002946"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"output_of","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0001985","FYPO:0005447","FYPO:0000002","FYPO:0002946"],"is_obsolete":false,"name":"decreased ascospore wall alpha-glucan level","synonyms":[{"name":"decreased ascospore wall alpha-D-glucan level","type":"exact"},{"name":"decreased ascospore wall alpha-glucan accumulation","type":"related"},{"name":"decreased ascospore wall alpha-glucan level during mitotic cell cycle","type":"related"},{"name":"decreased ascospore wall alpha-glucan level during vegetative growth","type":"exact"},{"name":"decreased spore wall alpha-glucan level","type":"exact"},{"name":"reduced ascospore wall alpha-glucan level","type":"exact"}],"termid":"FYPO:0007493"}


id: GO:1902824
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of late endosome to lysosome transport.","definition_xrefs":["GOC:PARL","GO_REF:0000058","GOC:TermGenie","PMID:23949442","GOC:pad"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of late endosome to lysosome transport","termid":"GO:1902822"},{"relation_name":"is_a","term_name":"positive regulation of vacuolar transport","termid":"GO:1903337"},{"relation_name":"positively_regulates","term_name":"late endosome to lysosome transport","termid":"GO:1902774"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"positively_regulates","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0006810","GO:0008150"],"is_obsolete":false,"name":"positive regulation of late endosome to lysosome transport","synonyms":[{"name":"activation of late endosome to lysosome transport","type":"narrow"},{"name":"up regulation of late endosome to lysosome transport","type":"exact"},{"name":"up-regulation of late endosome to lysosome transport","type":"exact"},{"name":"upregulation of late endosome to lysosome transport","type":"exact"}],"termid":"GO:1902824"}


id: PBO:0062094
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 4 subfamily A member 44 pseudogene","termid":"PBO:0062094"}


id: GO:0051496
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of the assembly of a stress fiber, a bundle of microfilaments and other proteins found in fibroblasts.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of actin filament bundle assembly","termid":"GO:0032233"},{"relation_name":"is_a","term_name":"regulation of stress fiber assembly","termid":"GO:0051492"},{"relation_name":"positively_regulates","term_name":"stress fiber assembly","termid":"GO:0043149"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0007010"},{"rel_name":"positively_regulates","termid":"GO:0030036"},{"rel_name":"positively_regulates","termid":"GO:0044085"},{"rel_name":"positively_regulates","termid":"GO:0007010"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0030036"},{"rel_name":"regulates","termid":"GO:0044085"}],"interesting_parent_ids":["GO:0007010","GO:0044085","GO:0030036","GO:0008150"],"is_obsolete":false,"name":"positive regulation of stress fiber assembly","synonyms":[{"name":"activation of stress fiber formation","type":"narrow"},{"name":"positive regulation of stress fibre biosynthesis","type":"related"},{"name":"positive regulation of stress fibre formation","type":"related"},{"name":"stimulation of stress fiber formation","type":"narrow"},{"name":"up regulation of stress fiber formation","type":"related"},{"name":"up-regulation of stress fiber formation","type":"exact"},{"name":"upregulation of stress fiber formation","type":"related"}],"termid":"GO:0051496"}


id: PBO:0078611
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tripartite motif containing 64B","termid":"PBO:0078611"}


id: PR:O94385
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- pom152 gene.","definition_xrefs":["PRO:DNx","UniProtKB:O94385"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nucleoporin pom152 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC29A10.07","synonyms":[{"name":"Spom972h-pom152","type":"exact"}],"termid":"PR:O94385"}


id: PBO:0040636
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"BARX homeobox 2","termid":"PBO:0040636"}


id: GO:0031424
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which the cytoplasm of the outermost cells of the vertebrate epidermis is replaced by keratin. Keratinization occurs in the stratum corneum, feathers, hair, claws, nails, hooves, and horns.","definition_xrefs":["GOC:dph","GOC:tb","GOC:ebc","GOC:sdb_2009"],"direct_ancestors":[{"relation_name":"is_a","term_name":"multicellular organismal process","termid":"GO:0032501"},{"relation_name":"part_of","term_name":"keratinocyte differentiation","termid":"GO:0030216"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"keratinization","termid":"GO:0031424"}


id: PBO:0055053
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2469","termid":"PBO:0055053"}


id: PBO:0030124
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_cellular_sulfur_level","termid":"PBO:0030124"}


id: GO:1903576
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a L-arginine stimulus.","definition_xrefs":["GO_REF:0000071","GOC:mr","GOC:TermGenie","PMID:6394628"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to amino acid","termid":"GO:0043200"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"response to L-arginine","termid":"GO:1903576"}


id: PBO:0051161
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"immunoglobulin heavy variable 3-42 (pseudogene)","termid":"PBO:0051161"}


id: PBO:0079836
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"unc-5 netrin receptor B","termid":"PBO:0079836"}


id: PBO:0025489
data:
  {"annotation_feature_type":"gene","cv_name":"name_description","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RecA Like Protein","termid":"PBO:0025489"}


id: PBO:0046783
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"EYA transcriptional coactivator and phosphatase 3","termid":"PBO:0046783"}


id: GO:0070105
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that increases the rate, frequency or extent of an interleukin-6-mediated signaling pathway.","definition_xrefs":["GOC:mah","GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of cytokine-mediated signaling pathway","termid":"GO:0001961"},{"relation_name":"is_a","term_name":"regulation of interleukin-6-mediated signaling pathway","termid":"GO:0070103"},{"relation_name":"positively_regulates","term_name":"interleukin-6-mediated signaling pathway","termid":"GO:0070102"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"positively_regulates","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"positive regulation of interleukin-6-mediated signaling pathway","synonyms":[{"name":"positive regulation of IL-6-mediated signaling pathway","type":"exact"},{"name":"positive regulation of interleukin-6-mediated signalling pathway","type":"exact"}],"termid":"GO:0070105"}


id: GO:0001654
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of the eye over time, from its formation to the mature structure. The eye is the organ of sight.","definition_xrefs":["GOC:jid","GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"sensory organ development","termid":"GO:0007423"},{"relation_name":"part_of","term_name":"visual system development","termid":"GO:0150063"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"eye development","secondary_identifiers":["GO:0042460","Wikipedia:Eye_development"],"termid":"GO:0001654"}


id: GO:0036333
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any biological process involved in the maintenance of the steady-state number of hepatocytes within a population of cells. Hepatocytes are specialized epithelial cells of the liver that are organized into interconnected plates called lobules.","definition_xrefs":["PMID:19878874","CL:0000182","GOC:nhn"],"direct_ancestors":[{"relation_name":"is_a","term_name":"homeostasis of number of cells","termid":"GO:0048872"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"hepatocyte homeostasis","termid":"GO:0036333"}


id: PBO:0049121
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"G protein-coupled receptor associated sorting protein 1","termid":"PBO:0049121"}


id: PATO:0000574
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A length quality which is relatively small.","definition_xrefs":["PATOC:GVG"],"direct_ancestors":[{"relation_name":"decreased_in_magnitude_relative_to","term_name":"normal","termid":"PATO:0000461"},{"relation_name":"is_a","term_name":"length","termid":"PATO:0000122"},{"relation_name":"is_a","term_name":"decreased size","termid":"PATO:0000587"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"decreased length","synonyms":[{"name":"short","type":"exact"},{"name":"shortened","type":"related"},{"name":"stubby","type":"related"}],"termid":"PATO:0000574"}


id: GO:0090403
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A cellular senescence process associated with the dismantling of a cell as a response to oxidative stress, e.g. high levels of reactive oxygen species, such as superoxide anions, hydrogen peroxide, and hydroxyl radicals.","definition_xrefs":["GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"stress-induced premature senescence","termid":"GO:0090400"},{"relation_name":"part_of","term_name":"cellular response to oxidative stress","termid":"GO:0034599"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"oxidative stress-induced premature senescence","termid":"GO:0090403"}


id: FYPO:0004093
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A meiosis phenotype in which meiotic telomere clustering is normal (i.e. indistinguishable from wild type). Meiotic telomere clustering is the dynamic reorganization of telomeres in early meiotic prophase, during which meiotic chromosome ends are gathered in a bouquet arrangement at the inner surface of the nuclear envelope proximal to the spindle pole body.","definition_xrefs":["GO:0045141","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal telomere localization","termid":"FYPO:0004973"},{"relation_name":"is_a","term_name":"normal cellular component organization","termid":"FYPO:0006003"},{"relation_name":"is_a","term_name":"localization phenotype during meiotic cell cycle","termid":"FYPO:0006393"},{"relation_name":"is_a","term_name":"normal meiotic cell cycle process","termid":"FYPO:0007078"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000138"}],"interesting_parent_ids":["FYPO:0000138","FYPO:0000257","FYPO:0000002"],"is_obsolete":false,"name":"normal meiotic telomere clustering","synonyms":[{"name":"normal bouquet formation","type":"exact"}],"termid":"FYPO:0004093"}


id: PBO:0070120
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U7 small nuclear 34 pseudogene","termid":"PBO:0070120"}


id: PBO:0070800
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L12 pseudogene 30","termid":"PBO:0070800"}


id: GO:0071737
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"An IgG immunoglobulin complex that is present in the plasma membrane of B cells and is composed of two identical immunoglobulin heavy chains of an IgG isotype and two identical immunoglobulin light chains and a signaling subunit, a heterodimer of the Ig-alpha and Ig-beta proteins.","definition_xrefs":["ISBN:0781765196","GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"B cell receptor complex","termid":"GO:0019815"},{"relation_name":"is_a","term_name":"IgG immunoglobulin complex","termid":"GO:0071735"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0005886"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0032991","GO:0005886","GO:0005575"],"is_obsolete":false,"name":"IgG B cell receptor complex","synonyms":[{"name":"membrane-bound IgG","type":"narrow"},{"name":"membrane-bound IgG1","type":"narrow"},{"name":"membrane-bound IgG2","type":"narrow"},{"name":"membrane-bound IgG2a","type":"narrow"},{"name":"membrane-bound IgG2b","type":"narrow"},{"name":"membrane-bound IgG2c","type":"narrow"},{"name":"membrane-bound IgG3","type":"narrow"},{"name":"membrane-bound IgG4","type":"narrow"},{"name":"surface IgG","type":"narrow"},{"name":"surface IgG1","type":"narrow"},{"name":"surface IgG2","type":"narrow"},{"name":"surface IgG2a","type":"narrow"},{"name":"surface IgG2b","type":"narrow"},{"name":"surface IgG2c","type":"narrow"},{"name":"surface IgG3","type":"narrow"},{"name":"surface IgG4","type":"narrow"}],"termid":"GO:0071737"}


id: PBO:0046712
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"EVA1A antisense RNA","termid":"PBO:0046712"}


id: PBO:0084432
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MAL-activator protein; encoded within the complex locus MAL4","termid":"PBO:0084432"}


id: GO:0015334
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Enables the transfer of oligopeptide from one side of a membrane to the other. In high-affinity transport the transporter is able to bind the solute even if it is only present at very low concentrations. Oligopeptides are molecules that contain a small number (2 to 20) of amino-acid residues connected by peptide linkages.","definition_xrefs":["GOC:mtg_transport"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oligopeptide transmembrane transporter activity","termid":"GO:0035673"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0022857"}],"interesting_parent_ids":["GO:0005215","GO:0003674","GO:0022857"],"is_obsolete":false,"name":"high-affinity oligopeptide transmembrane transporter activity","synonyms":[{"name":"high affinity oligopeptide transporter activity","type":"exact"},{"name":"high-affinity oligopeptide transporter activity","type":"related"}],"termid":"GO:0015334"}


id: PBO:0044842
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"defensin beta 130A","termid":"PBO:0044842"}


id: PBO:0074041
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SLC25A24 pseudogene 2","termid":"PBO:0074041"}


id: PBO:0072465
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein S29 pseudogene 29","termid":"PBO:0072465"}


id: PBO:0038306
data:
  {"annotation_feature_type":"gene","cv_name":"gene_ex","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protein_level","termid":"PBO:0038306"}


id: PBO:0054638
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2043","termid":"PBO:0054638"}


id: PBO:0066983
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RN7SK pseudogene 286","termid":"PBO:0066983"}


id: PR:Q9UT87
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- img1 gene.","definition_xrefs":["UniProtKB:Q9UT87","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"54S ribosomal protein subunit img1, mitochondrial (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC343.02","synonyms":[{"name":"Spom972h-img1","type":"exact"}],"termid":"PR:Q9UT87"}


id: PBO:0040100
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"artemin","termid":"PBO:0040100"}


id: PBO:0061486
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"neuregulin 4","termid":"PBO:0061486"}


id: PBO:0072108
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein S13 pseudogene 6","termid":"PBO:0072108"}


id: GO:0089714
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: UDP-N-acetyl-alpha-D-mannosamine + 2 NAD+ + H2O = UDP-N-acetyl-alpha-D-mannosaminuronate + 2 NADH + 2 H+.","definition_xrefs":["EC:1.1.1.336"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor","termid":"GO:0016616"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003824","GO:0016491","GO:0003674"],"is_obsolete":false,"name":"UDP-N-acetyl-D-mannosamine dehydrogenase activity","secondary_identifiers":["RHEA:25780"],"termid":"GO:0089714"}


id: GO:1900696
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of N',N'',N'''-triacetylfusarinine C biosynthetic process.","definition_xrefs":["GOC:TermGenie","GOC:di"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of nitrogen compound metabolic process","termid":"GO:0051172"},{"relation_name":"is_a","term_name":"negative regulation of secondary metabolite biosynthetic process","termid":"GO:1900377"},{"relation_name":"is_a","term_name":"regulation of N',N'',N'''-triacetylfusarinine C biosynthetic process","termid":"GO:1900695"},{"relation_name":"negatively_regulates","term_name":"N',N'',N'''-triacetylfusarinine C biosynthetic process","termid":"GO:1900551"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0019748"},{"rel_name":"negatively_regulates","termid":"GO:0019748"}],"interesting_parent_ids":["GO:0019748","GO:0008150"],"is_obsolete":false,"name":"negative regulation of N',N'',N'''-triacetylfusarinine C biosynthetic process","synonyms":[{"name":"down regulation of N',N'',N'''-triacetylfusarinine C anabolism","type":"exact"},{"name":"down regulation of N',N'',N'''-triacetylfusarinine C biosynthesis","type":"exact"},{"name":"down regulation of N',N'',N'''-triacetylfusarinine C biosynthetic process","type":"exact"},{"name":"down regulation of N',N'',N'''-triacetylfusarinine C formation","type":"exact"},{"name":"down regulation of N',N'',N'''-triacetylfusarinine C synthesis","type":"exact"},{"name":"down-regulation of N',N'',N'''-triacetylfusarinine C anabolism","type":"exact"},{"name":"down-regulation of N',N'',N'''-triacetylfusarinine C biosynthesis","type":"exact"},{"name":"down-regulation of N',N'',N'''-triacetylfusarinine C biosynthetic process","type":"exact"},{"name":"down-regulation of N',N'',N'''-triacetylfusarinine C formation","type":"exact"},{"name":"down-regulation of N',N'',N'''-triacetylfusarinine C synthesis","type":"exact"},{"name":"downregulation of N',N'',N'''-triacetylfusarinine C anabolism","type":"exact"},{"name":"downregulation of N',N'',N'''-triacetylfusarinine C biosynthesis","type":"exact"},{"name":"downregulation of N',N'',N'''-triacetylfusarinine C biosynthetic process","type":"exact"},{"name":"downregulation of N',N'',N'''-triacetylfusarinine C formation","type":"exact"},{"name":"downregulation of N',N'',N'''-triacetylfusarinine C synthesis","type":"exact"},{"name":"inhibition of N',N'',N'''-triacetylfusarinine C anabolism","type":"exact"},{"name":"inhibition of N',N'',N'''-triacetylfusarinine C biosynthesis","type":"exact"},{"name":"inhibition of N',N'',N'''-triacetylfusarinine C biosynthetic process","type":"narrow"},{"name":"inhibition of N',N'',N'''-triacetylfusarinine C formation","type":"exact"},{"name":"inhibition of N',N'',N'''-triacetylfusarinine C synthesis","type":"exact"},{"name":"negative regulation of N',N'',N'''-triacetylfusarinine C anabolism","type":"exact"},{"name":"negative regulation of N',N'',N'''-triacetylfusarinine C biosynthesis","type":"exact"},{"name":"negative regulation of N',N'',N'''-triacetylfusarinine C formation","type":"exact"},{"name":"negative regulation of N',N'',N'''-triacetylfusarinine C synthesis","type":"exact"}],"termid":"GO:1900696"}


id: PATO:0001625
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A functional quality held by the bearer when the latter exhibits increased ability to perform a regular function(s).","definition_xrefs":["PATO:MAH"],"direct_ancestors":[{"relation_name":"increased_in_magnitude_relative_to","term_name":"normal","termid":"PATO:0000461"},{"relation_name":"is_a","term_name":"functional","termid":"PATO:0001510"},{"relation_name":"is_a","term_name":"having extra function","termid":"PATO:0001559"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"increased functionality","synonyms":[{"name":"high functionality","type":"exact"}],"termid":"PATO:0001625"}


id: GO:0020028
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The directed movement of hemoglobin into a cell by receptor-mediated endocytosis.","definition_xrefs":["GOC:mb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"receptor-mediated endocytosis","termid":"GO:0006898"},{"relation_name":"is_a","term_name":"protein transport","termid":"GO:0015031"},{"relation_name":"is_a","term_name":"establishment of protein localization to organelle","termid":"GO:0072594"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0016192"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0006810","GO:0016192","GO:0051179"],"is_obsolete":false,"name":"endocytic hemoglobin import into cell","synonyms":[{"name":"endocytic hemoglobin import","type":"related"},{"name":"haemoglobin uptake","type":"exact"},{"name":"hemoglobin uptake","type":"exact"}],"termid":"GO:0020028"}


id: GO:0097449
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A prolongation or process extending from the soma of an astrocyte and wrapping around neurons.","definition_xrefs":["NIF_Subcellular:sao1630537580"],"direct_ancestors":[{"relation_name":"is_a","term_name":"glial cell projection","termid":"GO:0097386"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"astrocyte projection","synonyms":[{"name":"astrocyte process","type":"exact"},{"name":"peripheral astrocyte process","type":"related"},{"name":"vellous process","type":"related"}],"termid":"GO:0097449"}


id: PBO:0047293
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"fatty acyl-CoA reductase 2","termid":"PBO:0047293"}


id: PBO:0050356
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"heterogeneous nuclear ribonucleoprotein A1 pseudogene 59","termid":"PBO:0050356"}


id: PBO:0067744
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 5S ribosomal pseudogene 43","termid":"PBO:0067744"}


id: PBO:0085842
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm and to the nucleus; protein abundance increases in response to DNA replication stress","termid":"PBO:0085842"}


id: GO:0031903
data:
  {"annotated_genes":["SJAG_01165","SJAG_03781","SJAG_03715","SJAG_04146","SJAG_00702","SJAG_02693","SJAG_00947","SJAG_04315","SJAG_03493","SJAG_01685","SJAG_00974","SJAG_04763","SJAG_00891","SJAG_02997","SJAG_03440","SJAG_03324","SJAG_02619","SJAG_01854"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[63524,74809,92537,96809,73139,102082,112401,113274,83997,86143,110944,106524,71708,91028,100649,73303,76971,70948],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0005778"}]},"cv_name":"cellular_component","definition":"The lipid bilayer surrounding a microbody.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"microbody","termid":"GO:0042579"},{"relation_name":"is_a","term_name":"bounding membrane of organelle","termid":"GO:0098588"}],"gene_count":18,"genes_by_uniquename":{"SJAG_00702":null,"SJAG_00891":null,"SJAG_00947":null,"SJAG_00974":null,"SJAG_01165":null,"SJAG_01685":null,"SJAG_01854":null,"SJAG_02619":null,"SJAG_02693":null,"SJAG_02997":null,"SJAG_03324":null,"SJAG_03440":null,"SJAG_03493":null,"SJAG_03715":null,"SJAG_03781":null,"SJAG_04146":null,"SJAG_04315":null,"SJAG_04763":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005737"}],"interesting_parent_ids":["GO:0005737","GO:0005575"],"is_obsolete":false,"name":"microbody membrane","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000107":null,"PMID:21873635":null},"termid":"GO:0031903","terms_by_termid":{"GO:0005778":null}}


id: PBO:0076778
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TEA domain transcription factor 1","termid":"PBO:0076778"}


id: PBO:0041450
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chromosome 9 putative open reading frame 163","termid":"PBO:0041450"}


id: GO:0047244
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: N-acetyl-D-glucosaminyldiphosphoundecaprenol + UDP-N-acetyl-D-mannosamine = N-acetyl-beta-D-mannosaminyl-1,4-N-acetyl-D-glucosaminyldiphosphoundecaprenol + UDP.","definition_xrefs":["EC:2.4.1.187","MetaCyc:2.4.1.187-RXN"],"direct_ancestors":[{"relation_name":"is_a","term_name":"UDP-glycosyltransferase activity","termid":"GO:0008194"},{"relation_name":"is_a","term_name":"hexosyltransferase activity","termid":"GO:0016758"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0016757"}],"interesting_parent_ids":["GO:0016740","GO:0016757","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"N-acetylglucosaminyldiphosphoundecaprenol N-acetyl-beta-D-mannosaminyltransferase activity","secondary_identifiers":["RHEA:16053","MetaCyc:TEICHOICSYN2-RXN"],"synonyms":[{"name":"N-acetylmannosaminyltransferase activity","type":"related"},{"name":"UDP-N-acetyl-D-mannosamine:N-acetyl-beta-D-glucosaminyldiphosphoundecaprenol beta-1,4-N-acetylmannosaminyltransferase activity","type":"related"},{"name":"UDP-N-acetylmannosamine:N-acetylglucosaminyl diphosphorylundecaprenol N-acetylmannosaminyltransferase activity","type":"related"},{"name":"uridine diphosphoacetyl-mannosamineacetylglucosaminylpyrophosphorylundecaprenol acetylmannosaminyltransferase activity","type":"related"}],"termid":"GO:0047244"}


id: PBO:0076265
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SWI5 homologous recombination repair protein","termid":"PBO:0076265"}


id: PBO:0041555
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chromosome 19 open reading frame 38","termid":"PBO:0041555"}


id: PATO:0002500
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed ventrolaterally.","definition_xrefs":["PATOC:WD"],"direct_ancestors":[{"relation_name":"is_a","term_name":"orientation","termid":"PATO:0000133"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ventrolaterally orientation","synonyms":[{"name":"ventrolaterally directed","type":"exact"}],"termid":"PATO:0002500"}


id: PBO:0087391
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Steryl ester hydrolase; one of three gene products (Yeh1p, Yeh2p, Tgl1p) responsible for steryl ester hydrolase activity and involved in sterol homeostasis; localized to lipid particle membranes; YEH1 has a paralog, YEH2, that arose from the whole genome duplication","termid":"PBO:0087391"}


id: GO:0031166
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"OBSOLETE. The component of the vacuolar membrane consisting of gene products and protein complexes that have some part that penetrates at least one leaflet of the membrane bilayer. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer.","definition_xrefs":["GOC:dos","GOC:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete integral component of vacuolar membrane (obsolete GO:0031166)","synonyms":[{"name":"integral to vacuolar membrane","type":"narrow"}],"termid":"GO:0031166"}


id: GO:0061386
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The closure of the temporary ventral gap in the optic cup that contributes to its shaping.","definition_xrefs":["GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"morphogenesis of an epithelial sheet","termid":"GO:0002011"},{"relation_name":"part_of","term_name":"optic cup morphogenesis involved in camera-type eye development","termid":"GO:0002072"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"closure of optic fissure","synonyms":[{"name":"closure or choriod fissure","type":"related"}],"termid":"GO:0061386"}


id: GO:0035348
data:
  {"annotated_genes":["SJAG_04325"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[102095],"is_not":false,"summary":null,"term":"GO:0035348"}]},"cv_name":"biological_process","definition":"The process in which acetyl-CoA is transported across a membrane. Acetyl-CoA is a derivative of coenzyme A in which the sulfhydryl group is acetylated; it is a metabolite derived from several pathways (e.g. glycolysis, fatty acid oxidation, amino-acid catabolism) and is further metabolized by the tricarboxylic acid cycle. It is a key intermediate in lipid and terpenoid biosynthesis.","definition_xrefs":["GO:bf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"acetyl-CoA transport","termid":"GO:0015876"},{"relation_name":"is_a","term_name":"adenosine 3',5'-bisphosphate transmembrane transport","termid":"GO:0071106"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04325":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0055085"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0006810","GO:0055085","GO:0051179"],"is_obsolete":false,"name":"acetyl-CoA transmembrane transport","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"acetyl-CoA membrane transport","type":"exact"}],"termid":"GO:0035348","terms_by_termid":{"GO:0035348":null}}


id: GO:0004567
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the hydrolysis of terminal, non-reducing beta-D-mannose residues in beta-D-mannosides.","definition_xrefs":["EC:3.2.1.25"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mannosidase activity","termid":"GO:0015923"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016798"}],"interesting_parent_ids":["GO:0016787","GO:0003674","GO:0003824","GO:0016798"],"is_obsolete":false,"name":"beta-mannosidase activity","secondary_identifiers":["MetaCyc:3.2.1.25-RXN","Reactome:R-HSA-8853710"],"synonyms":[{"name":"beta-D-mannosidase activity","type":"related"},{"name":"beta-D-mannoside mannohydrolase activity","type":"related"},{"name":"beta-mannoside mannohydrolase activity","type":"related"},{"name":"exo-beta-D-mannanase activity","type":"related"},{"name":"mannanase activity","type":"related"},{"name":"mannase activity","type":"related"}],"termid":"GO:0004567"}


id: PBO:0084637
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Mevalonate kinase; acts in the biosynthesis of isoprenoids and sterols, including ergosterol, from mevalonate; human MVK functionally complements the lethality of the erg12 null mutation","termid":"PBO:0084637"}


id: PBO:0000440
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mediator complex subunit Pmc2/Med1","termid":"PBO:0000440"}


id: GO:0032969
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A protein complex that contains MAPKSP1 (MP1, Map2k1ip1) and ROBLD3 (p14, Mapbpip), is anchored to late endosomes, and is involved in selective activation of the ERK1 in ERK/MAPK signaling.","definition_xrefs":["PMID:15263099","PMID:16227978","PMID:17496910"],"direct_ancestors":[{"relation_name":"is_a","term_name":"membrane protein complex","termid":"GO:0098796"},{"relation_name":"part_of","term_name":"late endosome membrane","termid":"GO:0031902"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0031410"},{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0005768"}],"interesting_parent_ids":["GO:0005737","GO:0005768","GO:0005575","GO:0032991","GO:0031410"],"is_obsolete":false,"name":"endosomal scaffold complex","synonyms":[{"name":"MP1-p14 scaffolding complex","type":"exact"},{"name":"endosomal adaptor complex","type":"exact"}],"termid":"GO:0032969"}


id: PBO:0017950
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosome biogenesis protein Yar1 (predicted)","termid":"PBO:0017950"}


id: GO:0000950
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving the catabolism of branched chain amino acids to produce branched chain alcohols with one carbon less than the starting amino acid. In S. cerevisiae, this is known to occur for leucine, isoleucine, valine, methionine, phenylalanine, tyrosine, or tryptophan. When a branched chain family amino acid, leucine, isoleucine, or valine, is used as the substrate, 3-methylbutanol, 2-methylbutanol, or 2-methylpropanol, respectively, is produced. Often referred to as the Ehrlich pathway, these reactions generally occur during fermentation to produce a variety of alcohols, often collectively referred to as fusel alcohols. Depending on the redox state of the cells, carboxylic acid derivatives may be produced instead of alcohols.","definition_xrefs":["PMID:18281432","GOC:krc"],"direct_ancestors":[{"relation_name":"is_a","term_name":"amino acid catabolic process to alcohol via Ehrlich pathway","termid":"GO:0000947"},{"relation_name":"is_a","term_name":"branched-chain amino acid catabolic process","termid":"GO:0009083"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0006520"},{"rel_name":"is_a","termid":"GO:0044248"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0044281","GO:0044248","GO:0006520"],"is_obsolete":false,"name":"branched-chain amino acid catabolic process to alcohol via Ehrlich pathway","synonyms":[{"name":"branched chain family amino acid catabolic process to alcohol via Ehrlich pathway","type":"exact"}],"termid":"GO:0000950"}


id: GO:0003138
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process that results in the delineation of a specific region of the lateral mesoderm into the area which will form the primary beating heart tube. In mammals the primary heart field gives rise to the left ventricle.","definition_xrefs":["GOC:mtg_heart","GOC:rl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"heart field specification","termid":"GO:0003128"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"primary heart field specification","synonyms":[{"name":"FHS specification","type":"exact"},{"name":"first heart field specification","type":"exact"}],"termid":"GO:0003138"}


id: PBO:0086772
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Putative protein of unknown function; subunit of evolutionarily conserved EMC (Endoplasmic Reticulum Membrane Complex) implicated in ERAD (ER-associated degradation) and proper assembly of multi-pass transmembrane (TM) proteins; EMC acts in yeast as an ER-mitochondria tether that interacts with outer membrane protein Tom5p of TOM (Translocase of the Mitochondrial Outer Membrane) complex; YDR056C is not an essential protein","termid":"PBO:0086772"}


id: GO:0032534
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process that modulates the formation of a microvillus.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of microvillus organization","termid":"GO:0032530"},{"relation_name":"is_a","term_name":"regulation of plasma membrane bounded cell projection assembly","termid":"GO:0120032"},{"relation_name":"regulates","term_name":"microvillus assembly","termid":"GO:0030033"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0044085"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0044085","GO:0008150"],"is_obsolete":false,"name":"regulation of microvillus assembly","synonyms":[{"name":"regulation of microvillus biogenesis","type":"related"}],"termid":"GO:0032534"}


id: PBO:0071801
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"regulation of nuclear pre-mRNA domain containing 1B","termid":"PBO:0071801"}


id: PBO:0004336
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"phrenate dehydratase","termid":"PBO:0004336"}


id: GO:0048281
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which the anatomical structures of inflorescences are generated and organized. An inflorescence is the part of a seed plant body that is usually above ground and that can bear flowers.","definition_xrefs":["GOC:jid"],"direct_ancestors":[{"relation_name":"is_a","term_name":"developmental process involved in reproduction","termid":"GO:0003006"},{"relation_name":"is_a","term_name":"shoot system morphogenesis","termid":"GO:0010016"},{"relation_name":"is_a","term_name":"post-embryonic plant morphogenesis","termid":"GO:0090698"},{"relation_name":"part_of","term_name":"inflorescence development","termid":"GO:0010229"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"inflorescence morphogenesis","termid":"GO:0048281"}


id: PBO:0066445
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"REV3 like, DNA directed polymerase zeta catalytic subunit","termid":"PBO:0066445"}


id: PBO:0073759
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"solute carrier family 2 member 13","termid":"PBO:0073759"}


id: PBO:0055888
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"LRRC8D divergent transcript","termid":"PBO:0055888"}


id: PATO:0002496
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed dorsolaterally.","definition_xrefs":["PATOC:WD"],"direct_ancestors":[{"relation_name":"is_a","term_name":"orientation","termid":"PATO:0000133"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dorsolateral orientation","synonyms":[{"name":"dorsolaterally directed","type":"exact"}],"termid":"PATO:0002496"}


id: PR:Q9P776
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPBC1711.15c gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q9P776"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized protein C1711.15c (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC1711.15c","synonyms":[{"name":"Spom972h-SPBC1711.15c","type":"exact"}],"termid":"PR:Q9P776"}


id: GO:1901194
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of formation of translation preinitiation complex.","definition_xrefs":["GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of protein-containing complex assembly","termid":"GO:0031333"},{"relation_name":"is_a","term_name":"regulation of formation of translation preinitiation complex","termid":"GO:1901193"},{"relation_name":"is_a","term_name":"negative regulation of cytoplasmic translational initiation","termid":"GO:1904689"},{"relation_name":"negatively_regulates","term_name":"formation of translation preinitiation complex","termid":"GO:0001731"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"negatively_regulates","termid":"GO:0065003"},{"rel_name":"regulates","termid":"GO:0044085"},{"rel_name":"regulates","termid":"GO:0002181"},{"rel_name":"regulates","termid":"GO:0010467"},{"rel_name":"negatively_regulates","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0065003"}],"interesting_parent_ids":["GO:0002181","GO:0010467","GO:0008150","GO:0065003","GO:0044085"],"is_obsolete":false,"name":"negative regulation of formation of translation preinitiation complex","synonyms":[{"name":"down regulation of formation of translation pre-initiation complex","type":"exact"},{"name":"down regulation of formation of translation preinitiation complex","type":"exact"},{"name":"down regulation of translation preinitiation complex assembly","type":"exact"},{"name":"down-regulation of formation of translation pre-initiation complex","type":"exact"},{"name":"down-regulation of formation of translation preinitiation complex","type":"exact"},{"name":"down-regulation of translation preinitiation complex assembly","type":"exact"},{"name":"downregulation of formation of translation pre-initiation complex","type":"exact"},{"name":"downregulation of formation of translation preinitiation complex","type":"exact"},{"name":"downregulation of translation preinitiation complex assembly","type":"exact"},{"name":"inhibition of formation of translation pre-initiation complex","type":"exact"},{"name":"inhibition of formation of translation preinitiation complex","type":"narrow"},{"name":"inhibition of translation preinitiation complex assembly","type":"exact"},{"name":"negative regulation of formation of translation pre-initiation complex","type":"exact"},{"name":"negative regulation of translation preinitiation complex assembly","type":"exact"}],"termid":"GO:1901194"}


id: GO:0001930
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that increases the rate or extent of exocyst assembly.","definition_xrefs":["GOC:hjd"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of exocyst assembly","termid":"GO:0001928"},{"relation_name":"is_a","term_name":"positive regulation of protein-containing complex assembly","termid":"GO:0031334"},{"relation_name":"positively_regulates","term_name":"exocyst assembly","termid":"GO:0001927"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"positively_regulates","termid":"GO:0044085"},{"rel_name":"regulates","termid":"GO:0140056"},{"rel_name":"regulates","termid":"GO:0065003"},{"rel_name":"positively_regulates","termid":"GO:0065003"},{"rel_name":"regulates","termid":"GO:0044085"}],"interesting_parent_ids":["GO:0008150","GO:0044085","GO:0140056","GO:0065003"],"is_obsolete":false,"name":"positive regulation of exocyst assembly","synonyms":[{"name":"activation of exocyst assembly","type":"narrow"},{"name":"stimulation of exocyst assembly","type":"narrow"},{"name":"up regulation of exocyst assembly","type":"exact"},{"name":"up-regulation of exocyst assembly","type":"exact"},{"name":"upregulation of exocyst assembly","type":"exact"}],"termid":"GO:0001930"}


id: PBO:0109616
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Rho GTPase activating protein 16, pseudogene","termid":"PBO:0109616"}


id: PBO:0055707
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"lectin, mannose binding 2","termid":"PBO:0055707"}


id: GO:0045514
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to an interleukin-16 receptor.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cytokine receptor binding","termid":"GO:0005126"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005515"}],"interesting_parent_ids":["GO:0005515","GO:0003674","GO:0005488"],"is_obsolete":false,"name":"interleukin-16 receptor binding","synonyms":[{"name":"IL-16","type":"narrow"},{"name":"interleukin-16 receptor ligand","type":"narrow"}],"termid":"GO:0045514"}


id: GO:0008404
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of an NADPH- and oxygen-dependent reaction that converts arachidonic acid to cis-14,15-epoxyeicosatrienoic acid.","definition_xrefs":["RHEA:51472","PMID:10681399"],"direct_ancestors":[{"relation_name":"is_a","term_name":"arachidonic acid epoxygenase activity","termid":"GO:0008392"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0016491","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"arachidonic acid 14,15-epoxygenase activity","synonyms":[{"name":"cytochrome P450 CYP2C29","type":"narrow"},{"name":"cytochrome P450 CYP2C39","type":"narrow"}],"termid":"GO:0008404"}


id: PBO:0063780
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PHF5A pseudogene 7","termid":"PBO:0063780"}


id: PBO:0059531
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrially encoded tRNA-Cys (UGU/C)","termid":"PBO:0059531"}


id: GO:0033037
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process in which a polysaccharide is transported to, or maintained in, a specific location.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"macromolecule localization","termid":"GO:0033036"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0051179"}],"interesting_parent_ids":["GO:0008150","GO:0051179"],"is_obsolete":false,"name":"polysaccharide localization","synonyms":[{"name":"polysaccharide localisation","type":"exact"}],"termid":"GO:0033037"}


id: GO:0004604
data:
  {"annotated_genes":["SJAG_04060"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[78547],"is_not":false,"summary":null,"term":"GO:0004604"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: adenosine 3',5'-diphosphate + H+ + sulfite + thioredoxin disulfide = 3'-phospho-5'-adenylyl sulfate + thioredoxin. Thioredoxin disulfide is the oxidized form of thioredoxin; 3'-phosphoadenosine 5'-phosphosulfate is also known as PAPS.","definition_xrefs":["EC:1.8.4.8","RHEA:11724"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor","termid":"GO:0016671"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04060":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016491"],"is_obsolete":false,"name":"phosphoadenylyl-sulfate reductase (thioredoxin) activity","references_by_uniquename":{"PMID:21873635":null},"secondary_identifiers":["KEGG_REACTION:R02021","MetaCyc:1.8.4.8-RXN"],"synonyms":[{"name":"3'-phosphoadenylylsulfate reductase activity","type":"related"},{"name":"PAPS reductase activity","type":"related"},{"name":"PAPS reductase, thioredoxin-dependent activity","type":"related"},{"name":"PAPS sulfotransferase activity","type":"related"},{"name":"PAdoPS reductase activity","type":"related"},{"name":"adenosine 3',5'-bisphosphate,sulfite:oxidized-thioredoxin oxidoreductase (3'-phosphoadenosine-5'-phosphosulfate-forming)","type":"related"},{"name":"adenosine 3',5'-bisphosphate,sulfite:thioredoxin-disulfide oxidoreductase (3'-phosphoadenosine-5'-phosphosulfate-forming)","type":"related"},{"name":"phosphoadenosine-phosphosulfate reductase activity","type":"related"},{"name":"phosphoadenylyl-sulphate reductase (thioredoxin) activity","type":"exact"},{"name":"thioredoxin:3'-phospho-adenylylsulfate reductase activity","type":"related"},{"name":"thioredoxin:adenosine 3'-phosphate 5'-phosphosulfate reductase activity","type":"related"}],"termid":"GO:0004604","terms_by_termid":{"GO:0004604":null}}


id: GO:1902951
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of dendritic spine maintenance.","definition_xrefs":["PMID:24328732","GO_REF:0000058","GOC:sjp","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of cell projection organization","termid":"GO:0031345"},{"relation_name":"is_a","term_name":"regulation of dendritic spine maintenance","termid":"GO:1902950"},{"relation_name":"negatively_regulates","term_name":"dendritic spine maintenance","termid":"GO:0097062"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of dendritic spine maintenance","synonyms":[{"name":"down regulation of dendritic spine maintenance","type":"exact"},{"name":"down-regulation of dendritic spine maintenance","type":"exact"},{"name":"downregulation of dendritic spine maintenance","type":"exact"},{"name":"inhibition of dendritic spine maintenance","type":"narrow"}],"termid":"GO:1902951"}


id: PBO:0046609
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"endogenous retrovirus group K9, member 11","termid":"PBO:0046609"}


id: PBO:0016043
data:
  {"annotation_feature_type":"gene","cv_name":"complementation","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"functionally complemented by rat PTBP3","termid":"PBO:0016043"}


id: PBO:0079786
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"UDP glucuronosyltransferase family 1 member A7","termid":"PBO:0079786"}


id: FYPO:0003916
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the degradation of messenger RNA (mRNA) molecules that contain nonsense mutations is abnormal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"gene expression regulation phenotype during vegetative growth","termid":"FYPO:0001333"},{"relation_name":"is_a","term_name":"abnormal RNA catabolic process during vegetative growth","termid":"FYPO:0002136"},{"relation_name":"is_a","term_name":"abnormal gene expression","termid":"FYPO:0006551"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000294"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0006551"}],"interesting_parent_ids":["FYPO:0006551","FYPO:0001320","FYPO:0000294","FYPO:0005447","FYPO:0001985","FYPO:0000002"],"is_obsolete":false,"name":"abnormal nonsense-mediated decay","synonyms":[{"name":"abnormal NMD","type":"exact"},{"name":"abnormal nonsense-mediated decay during mitotic cell cycle","type":"related"},{"name":"abnormal nonsense-mediated decay during vegetative growth","type":"exact"},{"name":"abnormal nuclear-transcribed mRNA catabolic process, nonsense-mediated decay","type":"exact"}],"termid":"FYPO:0003916"}


id: FYPO:0004942
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A phenotype in which the glycan moiety of a glycoprotein contains galactose and mannose residues in a normal (i.e. indistinguishable from wild type) ratio. In wild-type cells, glycoprotein glycans contain mannose and galactose residues in a 1:1.2 ratio, and the galactose residues are connected by alpha-1,2 linkages.","definition_xrefs":["PMID:8782411","PMID:11015724","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal phenotype","termid":"FYPO:0000257"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000257"}],"interesting_parent_ids":["FYPO:0000257"],"is_obsolete":false,"name":"normal galactose:mannose ratio in glycoprotein glycan","synonyms":[{"name":"normal galactose:mannose ratio in glycoprotein oligosaccharide","type":"related"}],"termid":"FYPO:0004942"}


id: PBO:0080341
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"vomeronasal 1 receptor 105 pseudogene","termid":"PBO:0080341"}


id: GO:0035669
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The series of molecular signals initiated by a ligand binding to a toll-like receptor 4 where the TRAM adaptor mediates transduction of the signal. Toll-like 4 receptors are pattern recognition receptors that bind bacterial lipopolysaccharide (LPS) to initiate an innate immune response.","definition_xrefs":["PMID:18297073","GOC:BHF","PMID:14556004"],"direct_ancestors":[{"relation_name":"is_a","term_name":"toll-like receptor 4 signaling pathway","termid":"GO:0034142"},{"relation_name":"is_a","term_name":"TRAM-dependent toll-like receptor signaling pathway","termid":"GO:0035668"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"TRAM-dependent toll-like receptor 4 signaling pathway","synonyms":[{"name":"TRAM-dependent TLR4 signaling pathway","type":"exact"},{"name":"TRAM-dependent toll-like receptor 4 signalling pathway","type":"exact"}],"termid":"GO:0035669"}


id: PBO:0069713
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 993, pseudogene","termid":"PBO:0069713"}


id: PBO:0061447
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nuclear receptor subfamily 3 group C member 1 pseudogene 1","termid":"PBO:0061447"}


id: GO:0061874
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of hepatic stellate cell contraction.","definition_xrefs":["PMID:24204762"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of hepatic stellate cell contraction","termid":"GO:0061873"},{"relation_name":"is_a","term_name":"positive regulation of actin filament-based movement","termid":"GO:1903116"},{"relation_name":"positively_regulates","term_name":"hepatic stellate cell contraction","termid":"GO:0061872"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of hepatic stellate cell contraction","termid":"GO:0061874"}


id: GO:0033388
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of putrescine, 1,4-diaminobutane, from other compounds, including arginine.","definition_xrefs":["MetaCyc:PWY-46","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"arginine metabolic process","termid":"GO:0006525"},{"relation_name":"is_a","term_name":"putrescine biosynthetic process","termid":"GO:0009446"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006520"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0044281","GO:0008150","GO:0006520"],"is_obsolete":false,"name":"putrescine biosynthetic process from arginine","synonyms":[{"name":"putrescine anabolism from arginine","type":"exact"},{"name":"putrescine biosynthesis from arginine","type":"exact"},{"name":"putrescine formation from arginine","type":"exact"},{"name":"putrescine synthesis from arginine","type":"exact"}],"termid":"GO:0033388"}


id: GO:0022874
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the PEP-dependent, phosphoryl transfer-driven transport of substances across a membrane. The transport happens by catalysis of the reaction: protein N-phosphohistidine + cellobiose(out) = protein histidine + cellobiose phosphate(in). This differs from primary and secondary active transport in that the solute is modified during transport.","definition_xrefs":["GOC:mtg_transport","ISBN:0815340729"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein-N(PI)-phosphohistidine-sugar phosphotransferase activity","termid":"GO:0008982"},{"relation_name":"is_a","term_name":"cellobiose transmembrane transporter activity","termid":"GO:0019191"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0022857","GO:0003824","GO:0005215","GO:0016740"],"is_obsolete":false,"name":"protein-N(PI)-phosphohistidine-cellobiose phosphotransferase system transporter activity","synonyms":[{"name":"cellobiose PTS transporter activity","type":"exact"}],"termid":"GO:0022874"}


id: GO:1902586
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. An intercellular transport which involves another organism.","definition_xrefs":["GO_REF:0000089","GOC:jl","GOC:TermGenie"],"gene_count":0,"genotype_count":0,"name":"obsolete multi-organism intercellular transport (obsolete GO:1902586)","synonyms":[{"name":"multi organism intercellular transport","type":"exact"}],"termid":"GO:1902586"}


id: PBO:0077613
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TMSB4X pseudogene 4","termid":"PBO:0077613"}


id: PBO:0034027
data:
  {"annotation_feature_type":"gene","cv_name":"pubprop_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"canto_curator_email","termid":"PBO:0034027"}


id: PBO:0055996
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long stress-induced non-coding transcript 5","termid":"PBO:0055996"}


id: PBO:0058708
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 6836","termid":"PBO:0058708"}


id: GO:1900348
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of methane biosynthetic process from methylamine.","definition_xrefs":["GOC:mengo_curators","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of amine metabolic process","termid":"GO:0033238"},{"relation_name":"is_a","term_name":"regulation of cellular respiration","termid":"GO:0043457"},{"relation_name":"is_a","term_name":"regulation of alkane biosynthetic process","termid":"GO:1901577"},{"relation_name":"regulates","term_name":"methane biosynthetic process from methylamine","termid":"GO:2001128"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0006091"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0006091"],"is_obsolete":false,"name":"regulation of methane biosynthetic process from methylamine","termid":"GO:1900348"}


id: PBO:0003077
data:
  {"annotation_feature_type":"gene","cv_name":"gene_ex","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transcriptionally regulated by Tup12","termid":"PBO:0003077"}


id: FYPO:0002493
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which the observed rate of DNA 5'-adenosine monophosphate hydrolase activity is decreased.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal DNA 5'-adenosine monophosphate hydrolase activity","termid":"FYPO:0002491"},{"relation_name":"is_a","term_name":"decreased nuclease activity","termid":"FYPO:0004253"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000707"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000661"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0000654"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001985","FYPO:0000661","FYPO:0000707","FYPO:0000652","FYPO:0005447","FYPO:0000654"],"is_obsolete":false,"name":"decreased DNA 5'-adenosine monophosphate hydrolase activity","synonyms":[{"name":"reduced DNA 5'-adenosine monophosphate hydrolase activity","type":"exact"}],"termid":"FYPO:0002493"}


id: GO:0030991
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The smaller subcomplex of the intraciliary transport particle; characterized complexes have molecular weights of 710-760 kDa.","definition_xrefs":["GOC:kmv","PMID:14570576","GOC:cilia"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein-containing complex","termid":"GO:0032991"},{"relation_name":"part_of","term_name":"intraciliary transport particle","termid":"GO:0030990"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0005575","GO:0032991"],"is_obsolete":false,"name":"intraciliary transport particle A","synonyms":[{"name":"IFT A complex","type":"related"},{"name":"IFT complex A","type":"related"},{"name":"intraflagellar transport complex A","type":"exact"},{"name":"intraflagellar transport particle A","type":"exact"}],"termid":"GO:0030991"}


id: GO:0005500
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a juvenile hormone, a sesquiterpenoid derivative that function to maintain the larval state of insects at molting and that may be required for other processes, e.g. oogenesis.","definition_xrefs":["ISBN:0198506732","GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"isoprenoid binding","termid":"GO:0019840"},{"relation_name":"is_a","term_name":"hormone binding","termid":"GO:0042562"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0008289"}],"interesting_parent_ids":["GO:0005488","GO:0003674","GO:0008289"],"is_obsolete":false,"name":"juvenile hormone binding","termid":"GO:0005500"}


id: PBO:0030904
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_cytoskeleton_organization_during_vegetative_growth","termid":"PBO:0030904"}


id: PBO:0042499
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CDH18 antisense RNA 1","termid":"PBO:0042499"}


id: PBO:0004171
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"WD repeat/BOP1NT protein (predicted)","termid":"PBO:0004171"}


id: PBO:0091610
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CENP-V, S-(hydroxymethyl)glutathione synthase","termid":"PBO:0091610"}


id: PBO:0005243
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NatB N-acetyltransferase complex catalytic subunit Naa20 (predicted)","termid":"PBO:0005243"}


id: FYPO:0004613
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the spindle pole body is not attached to any interphase cytoplasmic microtubules; as a result, the microtubules are not connected to the nucleus. Normally, the spindle pole body is attached to at least one cytoplasmic microtubule bundle.","definition_xrefs":["PomBase:vw","PomBase:mah","PMID:15772152"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal mitotic spindle pole body morphology","termid":"FYPO:0001474"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0001320","FYPO:0000002"],"is_obsolete":false,"name":"abolished microtubule attachment to spindle pole body","synonyms":[{"name":"SPB detached from cytoplasmic microtubules","type":"exact"},{"name":"abolished microtubule attachment to nucleus","type":"broad"},{"name":"abolished microtubule attachment to spindle pole body during mitotic cell cycle","type":"related"},{"name":"abolished microtubule attachment to spindle pole body during vegetative growth","type":"exact"},{"name":"cytoplasmic microtubules absent from mitotic spindle pole body","type":"exact"},{"name":"cytoplasmic microtubules detached from spindle pole body","type":"exact"},{"name":"interphase microtubules detached from nucleus","type":"exact"},{"name":"interphase microtubules detached from spindle pole body","type":"exact"},{"name":"spindle pole body detached from cytoplasmic microtubules","type":"exact"}],"termid":"FYPO:0004613"}


id: PBO:0090818
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"vacuolar sorting protein Vps60","termid":"PBO:0090818"}


id: PBO:0060453
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase","termid":"PBO:0060453"}


id: GO:0034815
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: cis-4-(8-hydroxypyren-7-yl)-2-oxobut-3-enoate = 10-oxabenzo(def)chrysen-9-one + formate + H+.","definition_xrefs":["UM-BBD_reactionID:r1135"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxo-acid-lyase activity","termid":"GO:0016833"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016829"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0016829","GO:0003824"],"is_obsolete":false,"name":"cis-4-(8-hydroxypyren-7-yl)-2-oxobut-3-enoate lyase activity","secondary_identifiers":["EC:4.1.3.-"],"termid":"GO:0034815"}


id: GO:0052856
data:
  {"annotated_genes":["SJAG_02462"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[73279],"is_not":false,"summary":null,"term":"GO:0052856"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: (R)-NADHX = (S)-NADHX.","definition_xrefs":["PMID:21994945"],"direct_ancestors":[{"relation_name":"is_a","term_name":"racemase and epimerase activity","termid":"GO:0016854"}],"gene_count":1,"genes_by_uniquename":{"SJAG_02462":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016853"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003824","GO:0016853","GO:0003674"],"is_obsolete":false,"name":"NADHX epimerase activity","references_by_uniquename":{"PMID:21873635":null},"secondary_identifiers":["EC:5.1.99.6","RHEA:32215"],"termid":"GO:0052856","terms_by_termid":{"GO:0052856":null}}


id: PBO:0070531
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L6 pseudogene 30","termid":"PBO:0070531"}


id: GO:0090636
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The desmosomal part containing plakoglobins, plakophilins, the N-termini of desmoplakins, as well as the cytoplasmic tails of the desmosomal cadherins, which together attach the plaque to the plasma membrane.","definition_xrefs":["PMID:20066089"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular anatomical entity","termid":"GO:0110165"},{"relation_name":"part_of","term_name":"desmosome","termid":"GO:0030057"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"outer dense plaque of desmosome","termid":"GO:0090636"}


id: PBO:0072717
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"relaxin family peptide/INSL5 receptor 4","termid":"PBO:0072717"}


id: GO:0030905
data:
  {"annotated_genes":["SJAG_00971"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[70721],"is_not":false,"summary":null,"term":"GO:0030905"}]},"cv_name":"cellular_component","definition":"The dimeric subcomplex of the retromer, believed to be peripherally associated with the membrane. This dimeric complex is responsible for remodeling endosomal membranes to form a tube-structure to which cargo molecules are selected for recycling. The budding yeast complex comprises Vps5p and Vps17p, and may contain multiple copies of a Vps5p/Vps17p dimer. The mammalian complex contains SNX1 or SNX2 dimerized with SNX5 or SNX6.","definition_xrefs":["PMID:26220253","PMID:9700157","GOC:bf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"membrane protein complex","termid":"GO:0098796"},{"relation_name":"part_of","term_name":"retromer complex","termid":"GO:0030904"}],"gene_count":1,"genes_by_uniquename":{"SJAG_00971":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0005575","GO:0032991"],"is_obsolete":false,"name":"retromer, tubulation complex","references_by_uniquename":{"PMID:21873635":null},"synonyms":[{"name":"SNX-BAR dimer","type":"exact"},{"name":"heterodimeric membrane-deforming retromer subcomplex","type":"exact"},{"name":"retromer complex, outer shell","type":"exact"}],"termid":"GO:0030905","terms_by_termid":{"GO:0030905":null}}


id: PBO:0045483
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DSCAM antisense RNA 1","termid":"PBO:0045483"}


id: FYPO:0007543
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which double-stranded DNA binding by a gene product does not occur, when a gene or the bound DNA sequence is mutated. The affected gene product may be encoded by the mutated gene, or by a different gene.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abolished DNA binding","termid":"FYPO:0000659"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000653"},{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0000707"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0000652","FYPO:0000707","FYPO:0001985","FYPO:0000653"],"is_obsolete":false,"name":"abolished double-stranded DNA binding","synonyms":[{"name":"abolished dsDNA binding","type":"exact"},{"name":"double-stranded DNA binding abolished","type":"exact"}],"termid":"FYPO:0007543"}


id: GO:0052736
data:
  {"annotated_genes":["SJAG_00667","SJAG_01017"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[89663,95660],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0052861"},{"annotations":[89664,95661],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0052862"}]},"cv_name":"molecular_function","definition":"Catalysis of the hydrolysis of linkages in beta-D-glucans; beta-glucans are polysaccharides of D-glucose monomers linked by beta-glycosidic bonds.","definition_xrefs":["Wikipedia:Beta-glucan"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hydrolase activity, hydrolyzing O-glycosyl compounds","termid":"GO:0004553"}],"gene_count":2,"genes_by_uniquename":{"SJAG_00667":null,"SJAG_01017":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016798"},{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003824","GO:0016798","GO:0016787","GO:0003674"],"is_obsolete":false,"name":"beta-glucanase activity","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"beta-D-glucanase activity","type":"exact"}],"termid":"GO:0052736","terms_by_termid":{"GO:0052861":null,"GO:0052862":null}}


id: GO:0061823
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A ring-like structure observed at the base of the ciliary cap of insect spermatids. This structure may anchor the axoneme to the ciliary cap membrane and/or act as a diffusion barrier, proposed to be analogous to the annulus of mammalian sperm flagellum.","definition_xrefs":["PMID:25447994","PMID:4903810"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular anatomical entity","termid":"GO:0110165"},{"relation_name":"part_of","term_name":"cilium","termid":"GO:0005929"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"ring centriole","termid":"GO:0061823"}


id: PBO:0078536
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tripartite motif containing 28","termid":"PBO:0078536"}


id: PBO:0028669
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_number_of_Kms1_foci_during_response_to_DNA_damage","termid":"PBO:0028669"}


id: GO:0031872
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a type 1 proteinase activated receptor.","definition_xrefs":["GOC:mah","GOC:nln"],"direct_ancestors":[{"relation_name":"is_a","term_name":"proteinase activated receptor binding","termid":"GO:0031871"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0005515"}],"interesting_parent_ids":["GO:0003674","GO:0005488","GO:0005515"],"is_obsolete":false,"name":"type 1 proteinase activated receptor binding","synonyms":[{"name":"thrombin receptor binding","type":"exact"},{"name":"type 1 proteinase activated receptor ligand","type":"narrow"}],"termid":"GO:0031872"}


id: PBO:0004524
data:
  {"annotation_feature_type":"gene","cv_name":"EC numbers","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"5.3.1.8","termid":"PBO:0004524"}


id: PBO:0000361
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Rad32 nuclease","termid":"PBO:0000361"}


id: PBO:0061181
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nuclear-encoded mitochondrial tRNA-Gln (TTG) 11-1","termid":"PBO:0061181"}


id: PBO:0034087
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-ectoparasite_of","termid":"PBO:0034087"}


id: SO:0001585
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A sequence variant whereby at least one base of a codon is changed resulting in a codon that encodes for a different but similar amino acid. These variants may or may not be deleterious.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"missense_variant","termid":"SO:0001583"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"conservative_missense_variant","secondary_identifiers":["EBI:www.ebi.ac.uk/mutations/recommendations/mutevent.html"],"synonyms":[{"name":"conservative missense codon","type":"exact"},{"name":"conservative missense variant","type":"exact"},{"name":"neutral missense codon","type":"related"},{"name":"quiet missense codon","type":"related"}],"termid":"SO:0001585"}


id: GO:0030969
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The spliceosome-independent cleavage and ligation of the mRNA encoding a UFP-specific transcription factor to remove a single intron, thereby increasing both the translational efficiency of the processed mRNA and the activity of the protein it encodes.","definition_xrefs":["PMID:21924241","GOC:mah","PMID:12042763"],"gene_count":0,"genotype_count":0,"name":"obsolete mRNA splicing via endonucleolytic cleavage and ligation involved in unfolded protein response (obsolete GO:0030969)","synonyms":[{"name":"HAC1 mRNA splicing","type":"narrow"},{"name":"IRE1-mediated XBP-1 mRNA splicing","type":"narrow"},{"name":"Ire1p-mediated HAC-1 mRNA splicing","type":"narrow"},{"name":"UFP-specific transcription factor mRNA processing during unfolded protein response","type":"related"},{"name":"UFP-specific transcription factor mRNA processing involved in ER UPR","type":"exact"},{"name":"UFP-specific transcription factor mRNA processing involved in ER unfolded protein response","type":"exact"},{"name":"UFP-specific transcription factor mRNA processing involved in endoplasmic reticulum UPR","type":"exact"},{"name":"UFP-specific transcription factor mRNA processing involved in endoplasmic reticulum unfolded protein response","type":"exact"},{"name":"XBP1 mRNA splicing","type":"exact"},{"name":"XBP1 mRNA splicing under conditions of endoplasmic reticulum (ER) stress","type":"narrow"},{"name":"XBP1 mRNA splicing, via endonucleolytic cleavage and ligation","type":"exact"},{"name":"non-spliceosomal mRNA splicing in the unfolded protein response pathway","type":"exact"},{"name":"spliceosome-independent UFP-specific transcription factor mRNA processing","type":"exact"},{"name":"unconventional mRNA splicing involved in UPR","type":"exact"},{"name":"unconventional splicing of XBP1 mRNA","type":"exact"},{"name":"unfolded protein response, cleavage of primary transcript encoding UFP-specific transcription factor","type":"related"},{"name":"unfolded protein response, ligation of mRNA encoding UFP-specific transcription factor by RNA ligase","type":"related"}],"termid":"GO:0030969"}


id: PBO:0070352
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNY4 pseudogene 25","termid":"PBO:0070352"}


id: GO:0010056
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process involved in the specification of an atrichoblast.","definition_xrefs":["GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"plant epidermal cell fate specification","termid":"GO:0090628"},{"relation_name":"part_of","term_name":"atrichoblast differentiation","termid":"GO:0010055"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"atrichoblast fate specification","termid":"GO:0010056"}


id: PBO:0077528
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transmembrane protein 242","termid":"PBO:0077528"}


id: PBO:0004555
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNase P subunit Rpr2 (predicted)","termid":"PBO:0004555"}


id: GO:0102036
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: a tetrahydrofolate + a [methyl-Co(III) corrinoid Fe-S protein] = an N5-methyl-tetrahydrofolate + a [Co(I) corrinoid Fe-S protein].","definition_xrefs":["GOC:pz","EC:2.1.1.258","PMID:7928975"],"direct_ancestors":[{"relation_name":"is_a","term_name":"methyltransferase activity","termid":"GO:0008168"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016741"}],"interesting_parent_ids":["GO:0016741","GO:0003674","GO:0003824","GO:0016740"],"is_obsolete":false,"name":"methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase activity","secondary_identifiers":["MetaCyc:METHCOCLTH-RXN","RHEA:45200"],"termid":"GO:0102036"}


id: PBO:0082215
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Alpha 4 subunit of the 20S proteasome; may replace alpha 3 subunit (Pre9p) under stress conditions to create a more active proteasomal isoform; GFP-fusion protein relocates from cytosol to the mitochondrial surface upon oxidative stress","termid":"PBO:0082215"}


id: PBO:0000564
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"krr family protein (predicted)","termid":"PBO:0000564"}


id: PBO:0054849
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2263","termid":"PBO:0054849"}


id: PBO:0048916
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"golgin A8 family member K","termid":"PBO:0048916"}


id: PBO:0063768
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PHD finger protein 1","termid":"PBO:0063768"}


id: PBO:0058516
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 5704","termid":"PBO:0058516"}


id: GO:0007035
data:
  {"annotated_genes":["SJAG_04955","SJAG_01913","SJAG_00516","SJAG_00136","SJAG_01397","SJAG_01817","SJAG_04616","SJAG_02023","SJAG_00212","SJAG_00301","SJAG_05294"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[71187,72662,72810,73782,77435,78680,83831,91259,95527,97140,99365],"is_not":false,"summary":null,"term":"GO:0007035"}]},"cv_name":"biological_process","definition":"Any process that reduces the pH of the vacuole, measured by the concentration of the hydrogen ion.","definition_xrefs":["GOC:jid"],"direct_ancestors":[{"relation_name":"is_a","term_name":"intracellular pH reduction","termid":"GO:0051452"}],"gene_count":11,"genes_by_uniquename":{"SJAG_00136":null,"SJAG_00212":null,"SJAG_00301":null,"SJAG_00516":null,"SJAG_01397":null,"SJAG_01817":null,"SJAG_01913":null,"SJAG_02023":null,"SJAG_04616":null,"SJAG_04955":null,"SJAG_05294":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"vacuolar acidification","references_by_uniquename":{"GO_REF:0000107":null,"PMID:21873635":null},"termid":"GO:0007035","terms_by_termid":{"GO:0007035":null}}


id: PBO:0002667
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"medial ring protein Mid2","termid":"PBO:0002667"}


id: GO:0016333
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which the anatomical structures of a follicular epithelium are generated and organized.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"morphogenesis of an epithelium","termid":"GO:0002009"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"morphogenesis of follicular epithelium","termid":"GO:0016333"}


id: _global:is_active_in
data:
  {"annotation_feature_type":"gene","cv_name":"external","definition":"c executes activity in d if and only if c enables p and p occurs_in d.  Assuming no action at a distance by gene products, if a gene product enables (is capable of) a process that occurs in some structure, it must have at least some part in that structure.","direct_ancestors":[{"relation_name":"is_a","term_name":"functionally_related_to","termid":"_global:functionally_related_to"},{"relation_name":"is_a","term_name":"overlaps","termid":"_global:overlaps"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"is_active_in","secondary_identifiers":["RO:0002432"],"synonyms":[{"name":"enables activity in","type":"exact"}],"termid":"_global:is_active_in"}


id: GO:1905496
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of triplex DNA binding.","definition_xrefs":["GO_REF:0000059","GOC:TermGenie","PMID:26503245"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of DNA binding","termid":"GO:0051101"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of triplex DNA binding","termid":"GO:1905496"}


id: GO:0071132
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A protein complex that consists of an alphaX-beta2 integrin complex bound to intercellular adhesion molecule 4.","definition_xrefs":["PMID:16985175"],"direct_ancestors":[{"relation_name":"is_a","term_name":"plasma membrane protein complex","termid":"GO:0098797"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0005886"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0032991","GO:0005886","GO:0005575"],"is_obsolete":false,"name":"alphaX-beta2 integrin-ICAM-4 complex","synonyms":[{"name":"ITGAX-ITGB2-ICAM4 complex","type":"narrow"}],"termid":"GO:0071132"}


id: GO:0043639
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of benzoate, the anion of benzoic acid (benzenecarboxylic acid), a fungistatic compound widely used as a food preservative; it is conjugated to glycine in the liver and excreted as hippuric acid.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"benzoate metabolic process","termid":"GO:0018874"},{"relation_name":"is_a","term_name":"aromatic compound catabolic process","termid":"GO:0019439"},{"relation_name":"is_a","term_name":"monocarboxylic acid catabolic process","termid":"GO:0072329"},{"relation_name":"is_a","term_name":"organic cyclic compound catabolic process","termid":"GO:1901361"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044248"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0044281","GO:0044248","GO:0008150"],"is_obsolete":false,"name":"benzoate catabolic process","synonyms":[{"name":"benzoate breakdown","type":"exact"},{"name":"benzoate catabolism","type":"exact"},{"name":"benzoate degradation","type":"exact"}],"termid":"GO:0043639"}


id: GO:0050679
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the rate or extent of epithelial cell proliferation.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of cell population proliferation","termid":"GO:0008284"},{"relation_name":"is_a","term_name":"regulation of epithelial cell proliferation","termid":"GO:0050678"},{"relation_name":"positively_regulates","term_name":"epithelial cell proliferation","termid":"GO:0050673"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of epithelial cell proliferation","synonyms":[{"name":"activation of epithelial cell proliferation","type":"narrow"},{"name":"stimulation of epithelial cell proliferation","type":"narrow"},{"name":"up regulation of epithelial cell proliferation","type":"exact"},{"name":"up-regulation of epithelial cell proliferation","type":"exact"},{"name":"upregulation of epithelial cell proliferation","type":"exact"}],"termid":"GO:0050679"}


id: PBO:0046782
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"EYA2 antisense RNA 1","termid":"PBO:0046782"}


id: PBO:0065932
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Rac family small GTPase 1 pseudogene 6","termid":"PBO:0065932"}


id: GO:0033895
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the endonucleolytic cleavage of poly(U) to fragments terminated by 3'-hydroxy and 5'-phosphate groups.","definition_xrefs":["EC:3.1.26.9"],"direct_ancestors":[{"relation_name":"is_a","term_name":"RNA endonuclease activity, producing 5'-phosphomonoesters","termid":"GO:0016891"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0140098"},{"rel_name":"is_a","termid":"GO:0016788"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016787"}],"interesting_parent_ids":["GO:0140098","GO:0016788","GO:0003824","GO:0003674","GO:0016787"],"is_obsolete":false,"name":"ribonuclease [poly-(U)-specific] activity","synonyms":[{"name":"ribonuclease (uracil-specific) activity","type":"related"},{"name":"uracil-specific RNase activity","type":"related"},{"name":"uracil-specific endoribonuclease activity","type":"related"}],"termid":"GO:0033895"}


id: GO:0035178
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Fine-tuning the spatial position of an organism in response to variability in their environment. For example, reorientation of an organism in the direction of a food source.","definition_xrefs":["PMID:10880478"],"direct_ancestors":[{"relation_name":"is_a","term_name":"locomotory behavior","termid":"GO:0007626"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"turning behavior","synonyms":[{"name":"turning behaviour","type":"exact"}],"termid":"GO:0035178"}


id: PBO:0053672
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 853","termid":"PBO:0053672"}


id: GO:0061493
data:
  {"annotated_genes":["SJAG_02246","SJAG_02795","SJAG_04901"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[92442,93831,95362],"is_not":false,"summary":null,"term":"GO:0061493"}]},"cv_name":"cellular_component","definition":"One of three laminate structures that form the mitotic spindle pole body; the inner plaque is on the nuclear face of the spindle pole body.","definition_xrefs":["GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"central plaque of spindle pole body","termid":"GO:0005823"},{"relation_name":"part_of","term_name":"mitotic spindle pole body","termid":"GO:0044732"}],"gene_count":3,"genes_by_uniquename":{"SJAG_02246":null,"SJAG_02795":null,"SJAG_04901":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005816"},{"rel_name":"part_of","termid":"GO:0015630"}],"interesting_parent_ids":["GO:0005816","GO:0005575","GO:0015630"],"is_obsolete":false,"name":"central plaque of mitotic spindle pole body","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0061493","terms_by_termid":{"GO:0061493":null}}


id: PBO:0091202
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-Thr","termid":"PBO:0091202"}


id: PBO:0075480
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SPATA31 subfamily B member 1, pseudogene","termid":"PBO:0075480"}


id: PBO:0078882
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transient receptor potential cation channel subfamily V member 5","termid":"PBO:0078882"}


id: PBO:0081139
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ZFP36 ring finger protein like 2","termid":"PBO:0081139"}


id: PR:O74467
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- set5 gene.","definition_xrefs":["UniProtKB:O74467","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SET domain-containing protein 5 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC1739.05","synonyms":[{"name":"Spom972h-set5","type":"exact"}],"termid":"PR:O74467"}


id: PBO:0054496
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1896","termid":"PBO:0054496"}


id: GO:0140785
data:
  {"annotated_genes":["SJAG_03405"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[108118],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0140786"}]},"cv_name":"molecular_function","definition":"Binding to and responding, e.g. by conformational change, to changes in the cellular level of an amino acid.","definition_xrefs":["GOC:pg"],"direct_ancestors":[{"relation_name":"is_a","term_name":"small molecule sensor activity","termid":"GO:0140299"}],"gene_count":1,"genes_by_uniquename":{"SJAG_03405":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0140299"}],"interesting_parent_ids":["GO:0140299","GO:0003674"],"is_obsolete":false,"name":"amino acid sensor activity","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"amino acid sensing activity","type":"exact"}],"termid":"GO:0140785","terms_by_termid":{"GO:0140786":null}}


id: PBO:0091232
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"plasma membrane heme transmembrane transporter Str3","termid":"PBO:0091232"}


id: PBO:0087115
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Ribosome-associated protein; required for global translational elongation after recovery from stationary phase due to starvation; crosslinks to the 25S rRNA near the A site that overlaps the GTPase activation center, and to tRNAs; possible role in the iron deprivation response; localizes to the nucleus and cytoplasm, with enhanced nuclear localization under iron-replete conditions; null mutant exhibits slow growth during iron deprivation; orthologous to human CCDC124","termid":"PBO:0087115"}


id: PBO:0067058
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 79, pseudogene","termid":"PBO:0067058"}


id: GO:0032374
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of the directed movement of cholesterol into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of sterol transport","termid":"GO:0032371"},{"relation_name":"regulates","term_name":"cholesterol transport","termid":"GO:0030301"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0008150","GO:0006810"],"is_obsolete":false,"name":"regulation of cholesterol transport","termid":"GO:0032374"}


id: GO:0032631
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The appearance of interleukin-27 due to biosynthesis or secretion following a cellular stimulus, resulting in an increase in its intracellular or extracellular levels.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cytokine production","termid":"GO:0001816"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0010467","GO:0008150"],"is_obsolete":false,"name":"interleukin-27 production","secondary_identifiers":["GO:0072625","GO:0045527"],"synonyms":[{"name":"IL-27 production","type":"exact"},{"name":"interleukin-27 biosynthetic process","type":"narrow"},{"name":"interleukin-27 formation","type":"narrow"},{"name":"interleukin-27 secretion","type":"narrow"},{"name":"interleukin-27 synthesis","type":"narrow"}],"termid":"GO:0032631"}


id: PBO:0030647
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_pH_of_growth_medium","termid":"PBO:0030647"}


id: GO:0150117
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of cell-substrate junction organization.","definition_xrefs":["GOC:aruk"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of cellular component organization","termid":"GO:0051130"},{"relation_name":"is_a","term_name":"regulation of cell-substrate junction organization","termid":"GO:0150116"},{"relation_name":"positively_regulates","term_name":"cell-substrate junction organization","termid":"GO:0150115"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of cell-substrate junction organization","termid":"GO:0150117"}


id: PR:Q09731
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- bun107 gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q09731"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"UBP9-binding protein bun107 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC31A2.14","synonyms":[{"name":"Spom972h-bun107","type":"exact"},{"name":"binding ubp9 protein of 107 kDa (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:Q09731"}


id: GO:1990436
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The series of molecular signals in which a MAP kinase cascade activated by oxidative stress relays one or more of the signals, MAP kinase cascades involve at least three protein kinase activities and culminate in the phosphorylation and activation of a MAP kinase. Just FYI in pombe the osmotic stress and oxidative stress MAPK cascade involve many of the same proteins, but the pathways are slightly different, therefore Im req this term.","definition_xrefs":["PMID:10398679"],"gene_count":0,"genotype_count":0,"name":"obsolete MAPK cascade involved in oxidative stress signaling pathway (obsolete GO:1990436)","synonyms":[{"name":"MAPK cascade involved in oxidative stress signaling pathway","type":"exact"}],"termid":"GO:1990436"}


id: PBO:0072042
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein S10 pseudogene 12","termid":"PBO:0072042"}


id: PBO:0045686
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dynein light chain LC8-type 1 pseudogene 6","termid":"PBO:0045686"}


id: PBO:0041126
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"BTB domain containing 7 pseudogene 2","termid":"PBO:0041126"}


id: PBO:0052999
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"laminin subunit beta 3","termid":"PBO:0052999"}


id: GO:0010711
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that decreases the rate, frequency or extent of collagen catabolism. Collagen catabolism is the proteolytic chemical reactions and pathways resulting in the breakdown of collagen in the extracellular matrix.","definition_xrefs":["GOC:tb","GOC:dph","GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of catabolic process","termid":"GO:0009895"},{"relation_name":"is_a","term_name":"regulation of collagen catabolic process","termid":"GO:0010710"},{"relation_name":"is_a","term_name":"negative regulation of collagen metabolic process","termid":"GO:0010713"},{"relation_name":"negatively_regulates","term_name":"collagen catabolic process","termid":"GO:0030574"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of collagen catabolic process","synonyms":[{"name":"down regulation of collagen catabolic process","type":"exact"},{"name":"down-regulation of collagen catabolic process","type":"exact"},{"name":"downregulation of collagen catabolic process","type":"exact"},{"name":"inhibition of collagen catabolic process","type":"narrow"},{"name":"negative regulation of collagen breakdown","type":"exact"},{"name":"negative regulation of collagen catabolism","type":"exact"},{"name":"negative regulation of collagen degradation","type":"exact"}],"termid":"GO:0010711"}


id: PBO:0089065
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"fatty-acyl-CoA binding protein Acb1","termid":"PBO:0089065"}


id: PR:Q10178-2
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A U2 snRNP component prp10 (Schizosaccharomyces pombe 972h-) that is a translation product of some mRNA giving rise to a protein with the amino acid sequence represented by UniProtKB:Q10178-2.","definition_xrefs":["PRO:DNx","UniProtKB:Q10178"],"direct_ancestors":[{"relation_name":"is_a","term_name":"U2 snRNP component prp10 (Schizosaccharomyces pombe 972h-)","termid":"PR:Q10178"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"U2 snRNP component prp10 isoform B (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC1002.01","secondary_identifiers":["UniProtKB:Q10178-2"],"synonyms":[{"name":"Spom972h-SF3B1/iso:B","type":"exact"}],"termid":"PR:Q10178-2"}


id: PBO:0030017
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abolished_protein_localization_to_cell_division_site","termid":"PBO:0030017"}


id: PBO:0071923
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein S4 X-linked","termid":"PBO:0071923"}


id: PBO:0088453
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"acetyl-CoA C-acetyltransferase Erg10","termid":"PBO:0088453"}


id: GO:0042131
data:
  {"annotated_genes":["SJAG_04067","SJAG_01970"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[105767,105768],"is_not":false,"summary":null,"term":"GO:0042131"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: thiamine phosphate + H2O = thiamine + phosphate.","definition_xrefs":["PMID:197075","RHEA:47948"],"direct_ancestors":[{"relation_name":"is_a","term_name":"acid phosphatase activity","termid":"GO:0003993"}],"gene_count":2,"genes_by_uniquename":{"SJAG_01970":null,"SJAG_04067":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0016788"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016787","GO:0003824","GO:0016788","GO:0003674"],"is_obsolete":false,"name":"thiamine phosphate phosphatase activity","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["EC:3.1.3.100"],"synonyms":[{"name":"ThMPase","type":"exact"},{"name":"thiamin monophosphate phosphatase","type":"exact"},{"name":"thiamin phosphate phosphatase activity","type":"exact"}],"termid":"GO:0042131","terms_by_termid":{"GO:0042131":null}}


id: SO:0000584
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A tmRNA liberates a mRNA from a stalled ribosome. To accomplish this part of the tmRNA is used as a reading frame that ends in a translation stop signal. The broken mRNA is replaced in the ribosome by the tmRNA and translation of the tmRNA leads to addition of a proteolysis tag to the incomplete protein enabling recognition by a protease. Recently a number of permuted tmRNAs genes have been found encoded in two parts. TmRNAs have been identified in eubacteria and some chloroplasts but are absent from archeal and Eukaryote nuclear genomes.","direct_ancestors":[{"relation_name":"is_a","term_name":"small_regulatory_ncRNA","termid":"SO:0000370"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tmRNA","secondary_identifiers":["http://en.wikipedia.org/wiki/TmRNA"],"synonyms":[{"name":"10Sa RNA","type":"related"},{"name":"INSDC_feature:tmRNA","type":"exact"},{"name":"ssrA","type":"related"}],"termid":"SO:0000584"}


id: GO:0046358
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of butyrate, the anion of butyric acid.","definition_xrefs":["ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"butyrate metabolic process","termid":"GO:0019605"},{"relation_name":"is_a","term_name":"short-chain fatty acid biosynthetic process","termid":"GO:0051790"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0006629"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0044281","GO:0006629","GO:0008150"],"is_obsolete":false,"name":"butyrate biosynthetic process","secondary_identifiers":["GO:0043439"],"synonyms":[{"name":"butanoic acid anabolism","type":"exact"},{"name":"butanoic acid biosynthesis","type":"exact"},{"name":"butanoic acid biosynthetic process","type":"exact"},{"name":"butanoic acid formation","type":"exact"},{"name":"butanoic acid synthesis","type":"exact"},{"name":"butyrate anabolism","type":"exact"},{"name":"butyrate biosynthesis","type":"exact"},{"name":"butyrate formation","type":"exact"},{"name":"butyrate synthesis","type":"exact"}],"termid":"GO:0046358"}


id: PBO:0071605
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L36a pseudogene 23","termid":"PBO:0071605"}


id: PBO:0054504
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1904","termid":"PBO:0054504"}


id: PR:Q92341
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- str3 gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q92341"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"siderophore iron transporter 3 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC1F8.03c","synonyms":[{"name":"Spom972h-str3","type":"exact"}],"termid":"PR:Q92341"}


id: SO:0001612
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A sequence variant with in the CDS that causes in frame elongation of the resulting polypeptide sequence at the C terminus.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"elongated_polypeptide_C_terminal","termid":"SO:0001610"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"elongated_in_frame_polypeptide_C_terminal","synonyms":[{"name":"elongated in frame polypeptide C terminal","type":"exact"}],"termid":"SO:0001612"}


id: PBO:0057178
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 329-2","termid":"PBO:0057178"}


id: GO:0031469
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"An organelle found in bacteria consisting of a proteinaceous coat containing metabolic enzymes whose purpose is the sequestration or concentration of metabolites and which has the appearance of a polygonal granule by electron microscopy.","definition_xrefs":["PMID:12923081","PMID:10498708","PMID:11844753","PMID:34340100","GOC:js","PMID:34058518"],"direct_ancestors":[{"relation_name":"is_a","term_name":"intracellular non-membrane-bounded organelle","termid":"GO:0043232"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"bacterial microcompartment","synonyms":[{"name":"BAC","type":"broad"},{"name":"BMC","type":"broad"},{"name":"MCP","type":"broad"},{"name":"polyhedral organelle","type":"related"}],"termid":"GO:0031469"}


id: PBO:0057754
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 1913","termid":"PBO:0057754"}


id: GO:0042537
data:
  {"annotated_genes":["SJAG_04988","SJAG_02408"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[61348],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0097052"},{"annotations":[72865],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0008153"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways involving benzene, C6H6, a volatile, very inflammable liquid, contained in the naphtha produced by the destructive distillation of coal, from which it is separated by fractional distillation, or any of its derivatives.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular aromatic compound metabolic process","termid":"GO:0006725"},{"relation_name":"is_a","term_name":"organic cyclic compound metabolic process","termid":"GO:1901360"}],"gene_count":2,"genes_by_uniquename":{"SJAG_02408":null,"SJAG_04988":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"benzene-containing compound metabolic process","references_by_uniquename":{"GO_REF:0000108":null,"PMID:21873635":null},"synonyms":[{"name":"benzene and derivative metabolic process","type":"exact"},{"name":"benzene and derivative metabolism","type":"exact"},{"name":"benzene-containing compound metabolism","type":"exact"}],"termid":"GO:0042537","terms_by_termid":{"GO:0008153":null,"GO:0097052":null}}


id: RO:0002586
data:
  {"annotation_feature_type":"gene","cv_name":"relationship","definition":"p results in breakdown of c if and only if the execution of p leads to c no longer being present at the end of p","direct_ancestors":[{"relation_name":"is_a","term_name":"has_input","termid":"RO:0002233"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"results_in_breakdown_of","termid":"RO:0002586"}


id: SO:0000645
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"The reverse complement of the primary transcript.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"primary_transcript","termid":"SO:0000185"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"antisense_primary_transcript","synonyms":[{"name":"antisense primary transcript","type":"exact"}],"termid":"SO:0000645"}


id: GO:0052233
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The directed movement of a motile cell or organism towards a higher concentration of environmental oxygen within a second organism, where the two organisms are in a symbiotic interaction.","definition_xrefs":["GOC:mtg_pamgo_17jul06"],"gene_count":0,"genotype_count":0,"name":"obsolete positive aerotaxis in other organism involved in symbiotic interaction (obsolete GO:0052233)","synonyms":[{"name":"positive aerotaxis in other organism during symbiotic interaction","type":"related"},{"name":"positive aerotaxis within other organism during symbiotic interaction","type":"exact"}],"termid":"GO:0052233"}


id: PBO:0004069
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dynamin Dnm1","termid":"PBO:0004069"}


id: GO:0019546
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of arginine into other compounds, including ornithine and CO2, using the enzyme arginine deiminase.","definition_xrefs":["GOC:mah","MetaCyc:ARGDEGRAD-PWY"],"direct_ancestors":[{"relation_name":"is_a","term_name":"arginine catabolic process","termid":"GO:0006527"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0006520"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044248"}],"interesting_parent_ids":["GO:0006520","GO:0044281","GO:0008150","GO:0044248"],"is_obsolete":false,"name":"arginine deiminase pathway","termid":"GO:0019546"}


id: PBO:0087892
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Transcription coactivator; component of the ADA and SAGA transcriptional adaptor/HAT (histone acetyltransferase) complexes","termid":"PBO:0087892"}


id: GO:0030493
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving a bacteriochlorophyll, any of the chlorophylls of photosynthetic bacteria. They differ structurally from the chlorophylls of higher plants.","definition_xrefs":["GOC:mah","ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"chlorophyll metabolic process","termid":"GO:0015994"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0033013"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0033013","GO:0008150"],"is_obsolete":false,"name":"bacteriochlorophyll metabolic process","synonyms":[{"name":"bacteriochlorophyll metabolism","type":"exact"}],"termid":"GO:0030493"}


id: GO:0034708
data:
  {"annotated_genes":["SJAG_03431","SJAG_04890","SJAG_02768","SJAG_04181","SJAG_03949","SJAG_00896","SJAG_01540","SJAG_00341","SJAG_00769","SJAG_02329","SJAG_02637","SJAG_04680","SJAG_04848","SJAG_04574","SJAG_03680","SJAG_00756","SJAG_02170","SJAG_01325","SJAG_02119","SJAG_07011","SJAG_02386"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[105792,113888,89971,92309,109231,112819],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0043494"},{"annotations":[77651,91806],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0035657"},{"annotations":[110886,71445,104689,98567,101035,86419,112675,75090],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0048188"},{"annotations":[73582,74500],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0031515"},{"annotations":[99588,91808],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0043528"},{"annotations":[114059,110895],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0106143"}]},"cv_name":"cellular_component","definition":"A protein complex that possesses methyltransferase activity.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"transferase complex","termid":"GO:1990234"},{"relation_name":"part_of","term_name":"intracellular anatomical structure","termid":"GO:0005622"}],"gene_count":21,"genes_by_uniquename":{"SJAG_00341":null,"SJAG_00756":null,"SJAG_00769":null,"SJAG_00896":null,"SJAG_01325":null,"SJAG_01540":null,"SJAG_02119":null,"SJAG_02170":null,"SJAG_02329":null,"SJAG_02386":null,"SJAG_02637":null,"SJAG_02768":null,"SJAG_03431":null,"SJAG_03680":null,"SJAG_03949":null,"SJAG_04181":null,"SJAG_04574":null,"SJAG_04680":null,"SJAG_04848":null,"SJAG_04890":null,"SJAG_07011":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0032991","GO:0005575"],"is_obsolete":false,"name":"methyltransferase complex","references_by_uniquename":{"GO_REF:0000107":null,"PMID:21873635":null},"termid":"GO:0034708","terms_by_termid":{"GO:0031515":null,"GO:0035657":null,"GO:0043494":null,"GO:0043528":null,"GO:0048188":null,"GO:0106143":null}}


id: PBO:0013082
data:
  {"annotation_feature_type":"gene","cv_name":"complementation","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"does not functionally complement E. coli hisH","termid":"PBO:0013082"}


id: PBO:0049227
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glutamate metabotropic receptor 1","termid":"PBO:0049227"}


id: GO:0015450
data:
  {"annotated_genes":["SJAG_03560","SJAG_03515","SJAG_00373","SJAG_02077","SJAG_01879","SJAG_03502","SJAG_03358","SJAG_03415","SJAG_01597"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[86597,92468,95061,95828,98731,100598,102956,102978,107082],"is_not":false,"summary":null,"term":"GO:0015450"}]},"cv_name":"molecular_function","definition":"Primary active carrier-mediated transport of a protein across a membrane, driven by the hydrolysis of the diphosphate bond of inorganic pyrophosphate, ATP, or another nucleoside triphosphate. The transport protein may or may not be transiently phosphorylated, but the substrate is not phosphorylated.","definition_xrefs":["GOC:mtg_transport","ISBN:0815340729"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein transmembrane transporter activity","termid":"GO:0008320"},{"relation_name":"is_a","term_name":"ATPase-coupled transmembrane transporter activity","termid":"GO:0042626"}],"gene_count":9,"genes_by_uniquename":{"SJAG_00373":null,"SJAG_01597":null,"SJAG_01879":null,"SJAG_02077":null,"SJAG_03358":null,"SJAG_03415":null,"SJAG_03502":null,"SJAG_03515":null,"SJAG_03560":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0140318"}],"interesting_parent_ids":["GO:0140318","GO:0005215","GO:0022857","GO:0003674"],"is_obsolete":false,"name":"protein-transporting ATPase activity","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["Reactome:R-HSA-1222523"],"synonyms":[{"name":"P-P-bond-hydrolysis-driven protein transmembrane transporter activity","type":"related"},{"name":"protein translocase activity","type":"exact"}],"termid":"GO:0015450","terms_by_termid":{"GO:0015450":null}}


id: PBO:0061897
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"opsin 3","termid":"PBO:0061897"}


id: _global:results_in_commitment_to
data:
  {"annotation_feature_type":"gene","cv_name":"go/extensions/gorel","definition":"p 'results in commitment to' c if and only if p is a developmental process and c is a cell and p results in the state of c changing such that is can only develop into a single cell type.","direct_ancestors":[{"relation_name":"is_a","term_name":"go_annotation_extension_relation","termid":"_global:go_annotation_extension_relation"},{"relation_name":"is_a","term_name":"results_in_developmental_progression_of","termid":"_global:results_in_developmental_progression_of"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"results_in_commitment_to","secondary_identifiers":["RO:0002348","GOREL:0001017"],"termid":"_global:results_in_commitment_to"}


id: PBO:0073010
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sodium voltage-gated channel alpha subunit 10","termid":"PBO:0073010"}


id: GO:0042385
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A myosin complex containing a class III myosin heavy chain and associated light chains; myosin III is monomeric myosin that serves as a link between the cytoskeleton and the signaling complex involved in phototransduction, and differs from all other myosins in having an N-terminal kinase domain.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"unconventional myosin complex","termid":"GO:0016461"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0015629"}],"interesting_parent_ids":["GO:0015629","GO:0005575","GO:0032991"],"is_obsolete":false,"name":"myosin III complex","termid":"GO:0042385"}


id: PBO:0059247
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial ribosomal protein L16","termid":"PBO:0059247"}


id: MOD:01029
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively replaces a hydrogen atom with a succinyl group linked through a carbonyl carbon.","definition_xrefs":["DeltaMass:0","Unimod:64"],"direct_ancestors":[{"relation_name":"is_a","term_name":"acylated residue","termid":"MOD:00649"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"succinylated residue","synonyms":[{"name":"Succinic anhydride labeling reagent light form (N-term & K)","type":"related"}],"termid":"MOD:01029"}


id: PBO:0069880
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 1168, pseudogene","termid":"PBO:0069880"}


id: PBO:0014271
data:
  {"annotation_feature_type":"gene","cv_name":"complementation","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"functionally complements S. cerevisiae IDI1","termid":"PBO:0014271"}


id: GO:0015018
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: UDP-glucuronate + 3-beta-D-galactosyl-4-beta-D-galactosyl-O-beta-D-xylosylprotein = UDP + 3-beta-D-glucuronosyl-3-beta-D-galactosyl-4-beta-D-galactosyl-O-beta-D-xylosylprotein.","definition_xrefs":["EC:2.4.1.135"],"direct_ancestors":[{"relation_name":"is_a","term_name":"glucuronosyltransferase activity","termid":"GO:0015020"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016757"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016740","GO:0016757","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity","secondary_identifiers":["MetaCyc:2.4.1.135-RXN","Reactome:R-HSA-1889955","Reactome:R-HSA-9638064","Reactome:R-HSA-3560802","RHEA:24168"],"synonyms":[{"name":"UDP-glucuronate:3-beta-D-galactosyl-4-beta-D-galactosyl-O-beta-D-xylosyl-protein D-glucuronosyltransferase activity","type":"related"},{"name":"UDPglucuronate:3-beta-D-galactosyl-4-beta-D-galactosyl-O-beta-D-xylosyl-protein D-glucuronosyltransferase activity","type":"related"},{"name":"glucuronosyltransferase I activity","type":"narrow"},{"name":"uridine diphosphate glucuronic acid:acceptor glucuronosyltransferase activity","type":"related"}],"termid":"GO:0015018"}


id: SO:0000556
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"Recombination signal of an immunoglobulin/T-cell receptor gene, including the 5' D-nonamer (SO:0000497), 5' D-spacer (SO:0000498), and 5' D-heptamer (SO:0000396) in 5' of the D-region of a D-gene, or in 5' of the D-region of DJ-gene.","direct_ancestors":[{"relation_name":"is_a","term_name":"D_gene_recombination_feature","termid":"SO:0000492"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"five_prime_D_recombination_signal_sequence","synonyms":[{"name":"5'RS","type":"exact"},{"name":"five prime D recombination signal sequence","type":"exact"},{"name":"five prime D-recombination signal sequence","type":"exact"}],"termid":"SO:0000556"}


id: PBO:0063495
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PDZ and LIM domain 3","termid":"PBO:0063495"}


id: GO:2000878
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of oligopeptide transport.","definition_xrefs":["GOC:obol"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of transport","termid":"GO:0051050"},{"relation_name":"is_a","term_name":"regulation of oligopeptide transport","termid":"GO:0090088"},{"relation_name":"positively_regulates","term_name":"oligopeptide transport","termid":"GO:0006857"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"positively_regulates","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0008150","GO:0006810"],"is_obsolete":false,"name":"positive regulation of oligopeptide transport","termid":"GO:2000878"}


id: PBO:0053479
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 452","termid":"PBO:0053479"}


id: FYPO:0007820
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of polyphosphate measured in a cell is too low to detect.","definition_xrefs":["PomBase:mah","PMID:34147496"],"direct_ancestors":[{"relation_name":"is_a","term_name":"substance absent from cell during vegetative growth","termid":"FYPO:0001208"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0000002","FYPO:0001985"],"is_obsolete":false,"name":"polyphosphate absent from cell","synonyms":[{"name":"polyphosphate absent from cell during mitotic cell cycle","type":"related"},{"name":"polyphosphate absent from cell during vegetative growth","type":"exact"}],"termid":"FYPO:0007820"}


id: PR:O94625
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPBC1347.05c gene.","definition_xrefs":["UniProtKB:O94625","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DnaJ-related protein spj1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC1347.05c","synonyms":[{"name":"Spom972h-SPBC1347.05c","type":"exact"}],"termid":"PR:O94625"}


id: FYPO:0004348
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A phenotype in which vegetative cell population growth is normal (i.e. indistinguishable from wild type) in a medium containing methylglyoxal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal vegetative cell population growth","termid":"FYPO:0001357"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000003"},{"rel_name":"is_a","termid":"FYPO:0002058"},{"rel_name":"is_a","termid":"FYPO:0002060"},{"rel_name":"is_a","termid":"FYPO:0000139"},{"rel_name":"is_a","termid":"FYPO:0002057"},{"rel_name":"is_a","termid":"FYPO:0000257"}],"interesting_parent_ids":["FYPO:0000003","FYPO:0002058","FYPO:0000257","FYPO:0000139","FYPO:0002057","FYPO:0002060"],"is_obsolete":false,"name":"normal growth on methylglyoxal","synonyms":[{"name":"normal cell population growth in presence of methylglyoxal","type":"exact"},{"name":"normal cell population growth on methylglyoxal","type":"exact"},{"name":"normal cellular response to methylglyoxal","type":"related"},{"name":"normal vegetative cell population growth on methylglyoxal","type":"exact"}],"termid":"FYPO:0004348"}


id: GO:0033568
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Combining with lactoferrin and delivering lactoferrin into the cell via endocytosis. Lactoferrin is an iron-binding glycoprotein which binds ferric iron most efficiently at low pH.","definition_xrefs":["GOC:bf","GOC:mlg","PMID:16261254"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cargo receptor activity","termid":"GO:0038024"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0038024"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0038024","GO:0003674"],"is_obsolete":false,"name":"lactoferrin receptor activity","termid":"GO:0033568"}


id: GO:1904997
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of leukocyte adhesion to arterial endothelial cell.","definition_xrefs":["GOC:TermGenie","GOC:bc","GOC:BHF","GOC:BHF_miRNA","PMID:22267480","GO_REF:0000058"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of leukocyte adhesion to vascular endothelial cell","termid":"GO:1904994"},{"relation_name":"regulates","term_name":"leukocyte adhesion to arterial endothelial cell","termid":"GO:0061757"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0007155"}],"interesting_parent_ids":["GO:0008150","GO:0007155"],"is_obsolete":false,"name":"regulation of leukocyte adhesion to arterial endothelial cell","termid":"GO:1904997"}


id: GO:1904022
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of G protein-coupled receptor internalization.","definition_xrefs":["GOC:TermGenie","PMID:24732013","GO_REF:0000058"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of receptor internalization","termid":"GO:0002092"},{"relation_name":"is_a","term_name":"regulation of G protein-coupled receptor internalization","termid":"GO:1904020"},{"relation_name":"positively_regulates","term_name":"G protein-coupled receptor internalization","termid":"GO:0002031"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"regulates","termid":"GO:0023052"},{"rel_name":"positively_regulates","termid":"GO:0016192"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"positively_regulates","termid":"GO:0006810"},{"rel_name":"regulates","termid":"GO:0016192"}],"interesting_parent_ids":["GO:0006810","GO:0023052","GO:0008150","GO:0016192"],"is_obsolete":false,"name":"positive regulation of G protein-coupled receptor internalization","synonyms":[{"name":"activation of G-protein coupled receptor internalization","type":"narrow"},{"name":"positive regulation of G-protein coupled receptor internalization","type":"exact"},{"name":"up regulation of G-protein coupled receptor internalization","type":"exact"},{"name":"up-regulation of G-protein coupled receptor internalization","type":"exact"},{"name":"upregulation of G-protein coupled receptor internalization","type":"exact"}],"termid":"GO:1904022"}


id: GO:0019286
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of glycine betaine from other compounds, including glycine.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"glycine metabolic process","termid":"GO:0006544"},{"relation_name":"is_a","term_name":"glycine betaine biosynthetic process","termid":"GO:0031456"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0006520"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0044281","GO:0008150","GO:0006520"],"is_obsolete":false,"name":"glycine betaine biosynthetic process from glycine","secondary_identifiers":["MetaCyc:P541-PWY"],"synonyms":[{"name":"N-trimethylglycine biosynthesis from glycine","type":"exact"},{"name":"N-trimethylglycine biosynthetic process from glycine","type":"exact"},{"name":"glycine betaine anabolism from glycine","type":"exact"},{"name":"glycine betaine formation from glycine","type":"exact"},{"name":"glycine betaine synthesis from glycine","type":"exact"}],"termid":"GO:0019286"}


id: PBO:0011476
data:
  {"annotation_feature_type":"gene","cv_name":"cat_act","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"hydrolysis rate of sucrose to glucose is 3.1 (mM min-1 ml-2)","termid":"PBO:0011476"}


id: GO:0070813
data:
  {"annotated_genes":["SJAG_01693","SJAG_05027","SJAG_03475","SJAG_00084","SJAG_04060"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[102893,84536,85750,112616,83572],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0070814"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways involving hydrogen sulfide, H2S.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"sulfur compound metabolic process","termid":"GO:0006790"}],"gene_count":5,"genes_by_uniquename":{"SJAG_00084":null,"SJAG_01693":null,"SJAG_03475":null,"SJAG_04060":null,"SJAG_05027":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006790"}],"interesting_parent_ids":["GO:0006790","GO:0008150"],"is_obsolete":false,"name":"hydrogen sulfide metabolic process","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"hydrogen sulfide metabolism","type":"exact"},{"name":"hydrogen sulphide metabolic process","type":"exact"},{"name":"hydrogen sulphide metabolism","type":"exact"}],"termid":"GO:0070813","terms_by_termid":{"GO:0070814":null}}


id: PBO:0070982
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L19 pseudogene 6","termid":"PBO:0070982"}


id: FYPO:0008110
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which posttranscriptional addition of a methyl group to the 2'-oxygen atom of the adenine residue at position 64 in an U6 snRNA molecule is decreased.","definition_xrefs":["PMID:37403782"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased RNA modification","termid":"FYPO:0000372"},{"relation_name":"is_a","term_name":"abnormal snRNA modification","termid":"FYPO:0008111"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000294"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0005447","FYPO:0000294","FYPO:0000002","FYPO:0001320"],"is_obsolete":false,"name":"decreased U6 2'-O-snRNA methylation at residue A64","termid":"FYPO:0008110"}


id: GO:0060026
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The morphogenetic process in which an epithelium narrows along one axis and lengthens in a perpendicular axis.","definition_xrefs":["GOC:dgf","PMID:12062082","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"morphogenesis of an epithelium","termid":"GO:0002009"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"convergent extension","secondary_identifiers":["Wikipedia:Convergent_extension"],"termid":"GO:0060026"}


id: MOD:01646
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively removes or replaces an L-serine.","definition_xrefs":["PubMed:18688235"],"direct_ancestors":[{"relation_name":"is_a","term_name":"modified L-serine residue","termid":"MOD:00916"},{"relation_name":"is_a","term_name":"natural, standard, encoded residue removal","termid":"MOD:01651"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"L-serine removal","termid":"MOD:01646"}


id: MOD:01772
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"The palmityl cation protein modification reporter fragment produced by fragmentation of some palmitoyl modified residues.","definition_xrefs":["PubMed:18688235","PubMed:8413602"],"direct_ancestors":[{"relation_name":"derives_from","term_name":"palmitoylated residue","termid":"MOD:00440"},{"relation_name":"is_a","term_name":"modification reporter fragment","termid":"MOD:01520"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"palmityl reporter fragment","synonyms":[{"name":"Pam+","type":"exact"},{"name":"palmityl cation","type":"related"}],"termid":"MOD:01772"}


id: PBO:0083148
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Dubious open reading frame; unlikely to encode a functional protein, based on available experimental and comparative sequence data; almost completely overlaps ORF PCI8/YIL071C","termid":"PBO:0083148"}


id: MOD:00510
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"modification from Unimod N-linked glycosylation, dHex HexNAc","definition_xrefs":["Unimod:142","RESID:AA0151#var","OMSSA:183","PubMed:111247","PubMed:1694179","PubMed:5490222"],"direct_ancestors":[{"relation_name":"is_a","term_name":"N4-glycosyl-L-asparagine","termid":"MOD:00160"},{"relation_name":"is_a","term_name":"complex glycosylation","termid":"MOD:00725"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"HexNAc1dHex1 N4-glycosylated asparagine","synonyms":[{"name":"HexNAc(1)dHex(1)","type":"related"},{"name":"HexNAc1dHex1","type":"related"},{"name":"dHexHexNAcN","type":"exact"}],"termid":"MOD:00510"}


id: GO:0019203
data:
  {"annotated_genes":["SJAG_05314","SJAG_02713","SJAG_01862","SJAG_00039","SJAG_01646","SJAG_00182","SJAG_01531","SJAG_00129","SJAG_01427","SJAG_00685"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[74394,75458,77531,72782],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004331"},{"annotations":[74025,75275,77787,78057,78507,73602],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004805"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: carbohydrate phosphate + H2O = carbohydrate + phosphate.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phosphatase activity","termid":"GO:0016791"}],"gene_count":10,"genes_by_uniquename":{"SJAG_00039":null,"SJAG_00129":null,"SJAG_00182":null,"SJAG_00685":null,"SJAG_01427":null,"SJAG_01531":null,"SJAG_01646":null,"SJAG_01862":null,"SJAG_02713":null,"SJAG_05314":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016788"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016787"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016788","GO:0016787"],"is_obsolete":false,"name":"carbohydrate phosphatase activity","references_by_uniquename":{"PMID:21873635":null},"secondary_identifiers":["Reactome:R-HSA-3781018","Reactome:R-HSA-3791349","Reactome:R-HSA-3781011"],"termid":"GO:0019203","terms_by_termid":{"GO:0004331":null,"GO:0004805":null}}


id: FYPO:0003329
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to the cell tip does not occur during interphase of the mitotic cell cycle.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abolished protein localization to cell tip during vegetative growth","termid":"FYPO:0001585"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0001320","FYPO:0005447","FYPO:0000138","FYPO:0000002"],"is_obsolete":false,"name":"abolished protein localization to cell tip during mitotic interphase","synonyms":[{"name":"abolished protein localisation to cell tip during mitotic interphase","type":"exact"},{"name":"abolished protein localization to cell end during mitotic interphase","type":"exact"},{"name":"abolished protein localization to cell tip during mitotic interphase during vegetative growth","type":"exact"},{"name":"protein localization to cell tip abolished during mitotic interphase","type":"exact"}],"termid":"FYPO:0003329"}


id: PBO:0054347
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1740","termid":"PBO:0054347"}


id: GO:0070930
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A protein modification process in which a polypeptide is added to a nascent polypeptide cotranslationally by trans-translation.","definition_xrefs":["GOC:mah","GOC:jsg","GOC:jh2"],"direct_ancestors":[{"relation_name":"is_a","term_name":"co-translational protein modification","termid":"GO:0043686"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"trans-translation-dependent protein tagging","synonyms":[{"name":"co-translational protein tagging","type":"exact"},{"name":"cotranslational protein tagging","type":"exact"},{"name":"protein modification by trans-translation","type":"exact"}],"termid":"GO:0070930"}


id: GO:0036031
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which the guanylyltransferase enzyme responsible for adding a 7-methylguanosine cap on pre-mRNA becomes associated with the RNA polymerase II holoenzyme complex and the 5' end of a transcript.","definition_xrefs":["PMID:10594013","GOC:bf","GOC:rb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein-RNA complex assembly","termid":"GO:0022618"},{"relation_name":"part_of","term_name":"7-methylguanosine mRNA capping","termid":"GO:0006370"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0016071"},{"rel_name":"part_of","termid":"GO:0010467"},{"rel_name":"part_of","termid":"GO:0044085"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0065003"}],"interesting_parent_ids":["GO:0044085","GO:0008150","GO:0010467","GO:0065003","GO:0016071"],"is_obsolete":false,"name":"recruitment of mRNA capping enzyme to RNA polymerase II holoenzyme complex","synonyms":[{"name":"capping enzyme targeting to RNA polymerase II","type":"exact"},{"name":"recruitment of guanylyltransferase to RNA polymerase II holoenzyme complex","type":"exact"}],"termid":"GO:0036031"}


id: SO:0001326
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"7_methylguanosine is a modified guanosine base feature.","direct_ancestors":[{"relation_name":"is_a","term_name":"modified_guanosine","termid":"SO:0001276"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"seven_methylguanosine","secondary_identifiers":["RNAMOD:031"],"synonyms":[{"name":"7-methylguanosine","type":"exact"},{"name":"m7G","type":"exact"},{"name":"seven methylguanosine","type":"exact"}],"termid":"SO:0001326"}


id: SO:0100018
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A polypeptide binding motif is a short (up to 20 amino acids) polypeptide region of biological interest that contains one or more amino acids experimentally shown to bind to a ligand.","definition_xrefs":["EBIBS:GAR"],"direct_ancestors":[{"relation_name":"is_a","term_name":"biochemical_region_of_peptide","termid":"SO:0100001"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"SO:0000839"}],"interesting_parent_ids":["SO:0000839"],"is_obsolete":false,"name":"polypeptide_binding_motif","synonyms":[{"name":"binding","type":"related"},{"name":"polypeptide binding motif","type":"exact"}],"termid":"SO:0100018"}


id: PBO:0028819
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_protein_localization_to_chromatin_at_replication_forks_during_cellular_response_to_hydroxyurea","termid":"PBO:0028819"}


id: PBO:0046369
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ENTPD4 divergent transcript","termid":"PBO:0046369"}


id: PBO:0075490
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SPATA31 subfamily E member 3, pseudogene","termid":"PBO:0075490"}


id: FYPO:0006277
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A phenotype in which the structure of an N-linked glycan moiety of a nascent or mature glycoprotein differs from wild type.","definition_xrefs":["PMID:22988247","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal glycoprotein glycan structure","termid":"FYPO:0003290"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0002494"},{"rel_name":"output_of","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"output_of","termid":"FYPO:0002274"},{"rel_name":"is_a","termid":"FYPO:0003290"},{"rel_name":"output_of","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0003290","FYPO:0001320","FYPO:0002494","FYPO:0002274","FYPO:0001985"],"is_obsolete":false,"name":"abnormal N-linked glycoprotein glycan structure","synonyms":[{"name":"abnormal N-linked glycoprotein oligosaccharide structure","type":"related"}],"termid":"FYPO:0006277"}


id: PBO:0039338
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"alkaline phosphatase, placental","termid":"PBO:0039338"}


id: PBO:0050788
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"5-hydroxytryptamine receptor 3B","termid":"PBO:0050788"}


id: GO:0005523
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to tropomyosin, a protein associated with actin filaments both in cytoplasm and, in association with troponin, in the thin filament of striated muscle.","definition_xrefs":["GOC:curators","ISBN:0815316194"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cytoskeletal protein binding","termid":"GO:0008092"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0008092"},{"rel_name":"is_a","termid":"GO:0005515"}],"interesting_parent_ids":["GO:0003674","GO:0005488","GO:0008092","GO:0005515"],"is_obsolete":false,"name":"tropomyosin binding","termid":"GO:0005523"}


id: GO:0003429
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which the structures of a chondrocyte in the growth plate cartilage are generated and organized.","definition_xrefs":["GOC:dph","GOC:ascb_2009","GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"chondrocyte morphogenesis involved in endochondral bone morphogenesis","termid":"GO:0003414"},{"relation_name":"is_a","term_name":"growth plate cartilage morphogenesis","termid":"GO:0003422"},{"relation_name":"part_of","term_name":"growth plate cartilage chondrocyte differentiation","termid":"GO:0003418"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"growth plate cartilage chondrocyte morphogenesis","termid":"GO:0003429"}


id: PBO:0057729
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 1304","termid":"PBO:0057729"}


