# terms

id: PATO:0002217
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A molecular quality inhering in a bearer by virtue of the bearer's being combined, or impregnated, with nitric acid, or some of its compounds.","definition_xrefs":["neurolex:http://neurolex.org/wiki/Category:Nitrated_Molecular_Quality"],"direct_ancestors":[{"relation_name":"is_a","term_name":"molecular quality","termid":"PATO:0002182"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nitrated","termid":"PATO:0002217"}


id: PBO:0046273
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"emerin","termid":"PBO:0046273"}


id: PR:Q9C110
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- mug177 gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q9C110"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"meiotically up-regulated gene 177 protein (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC630.15","synonyms":[{"name":"Spom972h-mug177","type":"exact"}],"termid":"PR:Q9C110"}


id: PBO:0090920
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"guanylate kinase Guk1","termid":"PBO:0090920"}


id: GO:0031884
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a type 1 member 1 taste receptor.","definition_xrefs":["GOC:mah","GOC:nln"],"direct_ancestors":[{"relation_name":"is_a","term_name":"taste receptor binding","termid":"GO:0031883"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005515"},{"rel_name":"is_a","termid":"GO:0005488"}],"interesting_parent_ids":["GO:0003674","GO:0005488","GO:0005515"],"is_obsolete":false,"name":"type 1 member 1 taste receptor binding","synonyms":[{"name":"type 1 member 1 taste receptor ligand","type":"narrow"}],"termid":"GO:0031884"}


id: PBO:0000400
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"membrane bound O-acyltransferase, MBOAT (predicted)","termid":"PBO:0000400"}


id: PBO:0089978
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"histone H2A-H2B chaperone, FACT complex subunit Pob3","termid":"PBO:0089978"}


id: SO:0000599
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","gene_count":0,"genotype_count":0,"name":"OBSOLETE SO:0000599 edited_by_C_to_U_substitution (obsolete SO:0000599)","termid":"SO:0000599"}


id: PBO:0026760
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_protein_degradation_during_cellular_response_to_UV","termid":"PBO:0026760"}


id: PATO:0001611
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A variability quality inhering in a bearer by virtue of whether the bearer exhibits color variation or change.","definition_xrefs":["PATO:GVG"],"direct_ancestors":[{"relation_name":"is_a","term_name":"variability","termid":"PATO:0001303"},{"relation_name":"towards","term_name":"color","termid":"PATO:0000014"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"variability of color","termid":"PATO:0001611"}


id: PBO:0050250
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"high mobility group nucleosomal binding domain 2 pseudogene 28","termid":"PBO:0050250"}


id: GO:0005395
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: ATP + H2O + eye pigment precursor(in) = ADP + phosphate + eye pigment precursor(out).","definition_xrefs":["TC:3.A.1.204.1"],"gene_count":0,"genotype_count":0,"name":"obsolete eye pigment precursor transporter activity (obsolete GO:0005395)","termid":"GO:0005395"}


id: GO:2000136
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of cell proliferation involved in heart morphogenesis.","definition_xrefs":["GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of cell population proliferation","termid":"GO:0042127"},{"relation_name":"regulates","term_name":"cell proliferation involved in heart morphogenesis","termid":"GO:0061323"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of cell proliferation involved in heart morphogenesis","termid":"GO:2000136"}


id: PBO:0002973
data:
  {"annotation_feature_type":"gene","cv_name":"gene_ex","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"expression induced by sulfur limitation","termid":"PBO:0002973"}


id: GO:0034672
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The developmental process that results in the creation of defined areas or spaces within the pronephros along the anterior/posterior axis to which cells respond and eventually are instructed to differentiate.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pattern specification involved in pronephros development","termid":"GO:0039017"},{"relation_name":"is_a","term_name":"anterior/posterior pattern specification involved in kidney development","termid":"GO:0072098"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"anterior/posterior pattern specification involved in pronephros development","synonyms":[{"name":"anterior/posterior pattern specification involved in pronephric kidney development","type":"exact"}],"termid":"GO:0034672"}


id: PBO:0086972
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Regulatory subunit of dolichyl phosphate mannose (DPM) synthase; identified based on comparisons of the genome sequences of six Saccharomyces species; SWAT-GFP, seamless-GFP and mCherry fusion proteins localize to the endoplasmic reticulum","termid":"PBO:0086972"}


id: GO:0010115
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of abscisic acid.","definition_xrefs":["GOC:sm"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of cellular ketone metabolic process","termid":"GO:0010565"},{"relation_name":"is_a","term_name":"regulation of isoprenoid metabolic process","termid":"GO:0019747"},{"relation_name":"is_a","term_name":"regulation of cellular biosynthetic process","termid":"GO:0031326"},{"relation_name":"is_a","term_name":"regulation of secondary metabolic process","termid":"GO:0043455"},{"relation_name":"is_a","term_name":"regulation of lipid biosynthetic process","termid":"GO:0046890"},{"relation_name":"is_a","term_name":"regulation of alcohol biosynthetic process","termid":"GO:1902930"},{"relation_name":"regulates","term_name":"abscisic acid biosynthetic process","termid":"GO:0009688"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0019748"},{"rel_name":"regulates","termid":"GO:0006629"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0008150","GO:0019748","GO:0006629","GO:0044281"],"is_obsolete":false,"name":"regulation of abscisic acid biosynthetic process","synonyms":[{"name":"regulation of abscisic acid anabolism","type":"exact"},{"name":"regulation of abscisic acid biosynthesis","type":"exact"},{"name":"regulation of abscisic acid formation","type":"exact"},{"name":"regulation of abscisic acid synthesis","type":"exact"}],"termid":"GO:0010115"}


id: PR:Q10072
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPAC3H1.06c gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q10072"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized transporter C3H1.06c (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC3H1.06c","synonyms":[{"name":"Spom972h-SPAC3H1.06c","type":"exact"}],"termid":"PR:Q10072"}


id: PBO:0040136
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"activating signal cointegrator 1 complex subunit 2","termid":"PBO:0040136"}


id: PBO:0050074
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"hydroxymethylbilane synthase","termid":"PBO:0050074"}


id: GO:0098638
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Any laminin protein binding that occurs as part of cell-matrix adhesion.","definition_xrefs":["GOC:dos"],"direct_ancestors":[{"relation_name":"is_a","term_name":"laminin binding","termid":"GO:0043236"},{"relation_name":"is_a","term_name":"cell-matrix adhesion mediator activity","termid":"GO:0098634"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005515"},{"rel_name":"is_a","termid":"GO:0098631"},{"rel_name":"is_a","termid":"GO:0005488"}],"interesting_parent_ids":["GO:0005488","GO:0005515","GO:0003674","GO:0098631"],"is_obsolete":false,"name":"laminin binding involved in cell-matrix adhesion","termid":"GO:0098638"}


id: PBO:0045876
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"eukaryotic translation elongation factor 1 delta","termid":"PBO:0045876"}


id: PBO:0073427
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SF3A2 pseudogene 1","termid":"PBO:0073427"}


id: PBO:0059678
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MT-CO1 pseudogene 44","termid":"PBO:0059678"}


id: GO:0016209
data:
  {"annotated_genes":["SJAG_02630","SJAG_04788","SJAG_01216","SJAG_00141","SJAG_04823","SJAG_01734","SJAG_00668","SJAG_01199","SJAG_04953","SJAG_04125","SJAG_04632","SJAG_01162","SJAG_05181","SJAG_00489","SJAG_02515","SJAG_03303","SJAG_03166","SJAG_01292","SJAG_03653","SJAG_04399"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[95498],"is_not":false,"summary":null,"term":"GO:0016209"},{"annotations":[71123],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004096"},{"annotations":[93502,94796,58739,85145],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004602"},{"annotations":[77842],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004362"},{"annotations":[102164],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004601"},{"annotations":[100694],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0051920"},{"annotations":[75931],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0032542"},{"annotations":[105441,76187,95652,99441],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004784"},{"annotations":[78195,90784,104165,75126,70422],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0008379"},{"annotations":[73025,78292],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004791"}]},"cv_name":"molecular_function","definition":"Inhibition of the reactions brought about by dioxygen (O2) or peroxides. Usually the antioxidant is effective because it can itself be more easily oxidized than the substance protected. The term is often applied to components that can trap free radicals, thereby breaking the chain reaction that normally leads to extensive biological damage.","definition_xrefs":["ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"molecular_function","termid":"GO:0003674"}],"gene_count":20,"genes_by_uniquename":{"SJAG_00141":null,"SJAG_00489":null,"SJAG_00668":null,"SJAG_01162":null,"SJAG_01199":null,"SJAG_01216":null,"SJAG_01292":null,"SJAG_01734":null,"SJAG_02515":null,"SJAG_02630":null,"SJAG_03166":null,"SJAG_03303":null,"SJAG_03653":null,"SJAG_04125":null,"SJAG_04399":null,"SJAG_04632":null,"SJAG_04788":null,"SJAG_04823":null,"SJAG_04953":null,"SJAG_05181":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674"],"is_obsolete":false,"name":"antioxidant activity","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000107":null,"PMID:21873635":null},"termid":"GO:0016209","terms_by_termid":{"GO:0004096":null,"GO:0004362":null,"GO:0004601":null,"GO:0004602":null,"GO:0004784":null,"GO:0004791":null,"GO:0008379":null,"GO:0016209":null,"GO:0032542":null,"GO:0051920":null}}


id: FYPO:0005147
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a proteasome to the nuclear periphery is abolished.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abolished protein localization to nucleus during vegetative growth","termid":"FYPO:0001424"},{"relation_name":"is_a","term_name":"abnormal protein localization to nuclear periphery","termid":"FYPO:0002338"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0000138","FYPO:0001985","FYPO:0005447","FYPO:0000002","FYPO:0001320"],"is_obsolete":false,"name":"abolished proteasome localization to nuclear periphery","synonyms":[{"name":"abolished proteasome localisation to nuclear periphery","type":"exact"},{"name":"abolished proteasome localization to nuclear periphery during mitotic cell cycle","type":"related"},{"name":"abolished proteasome localization to nuclear periphery during vegetative growth","type":"exact"},{"name":"proteasome localization to nuclear periphery abolished","type":"exact"}],"termid":"FYPO:0005147"}


id: GO:0071982
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The dormancy process that results an organism remaining in diapause. Diapause is a neurohormonally mediated, dynamic state of low metabolic activity. Associated characteristics of this form of dormancy include reduced morphogenesis, increased resistance to environmental extremes, and altered or reduced behavioral activity. Full expression develops in a species-specific manner, usually in response to a number of environmental stimuli that precede unfavorable conditions. Once diapause has begun, metabolic activity is suppressed even if conditions favorable for development prevail. Once initiated, only certain stimuli are capable of releasing the organism from this state, and this characteristic is essential in distinguishing diapause from hibernation.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"dormancy process","termid":"GO:0022611"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"maintenance of diapause","termid":"GO:0071982"}


id: GO:0035749
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The region of the myelin sheath nearest to the axon.","definition_xrefs":["GOC:BHF","PMID:20237282"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular anatomical entity","termid":"GO:0110165"},{"relation_name":"part_of","term_name":"myelin sheath","termid":"GO:0043209"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"myelin sheath adaxonal region","termid":"GO:0035749"}


id: PBO:0073093
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"succinate dehydrogenase complex subunit C pseudogene 2","termid":"PBO:0073093"}


id: PBO:0090699
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TIM23 translocase complex-associated motor subunit Pam17","termid":"PBO:0090699"}


id: PR:G2TRP1
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPBC30B4.09 gene.","definition_xrefs":["UniProtKB:G2TRP1","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized protein C30B4.09 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC30B4.09","synonyms":[{"name":"Spom972h-SPBC30B4.09","type":"exact"}],"termid":"PR:G2TRP1"}


id: GO:0048579
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces long-day photoperiodism, where the response associated with the photoperiodism is flowering. Flowering is defined by the switch from the vegetative to the reproductive phase.","definition_xrefs":["ISBN:0582015952","GOC:pj","ISBN:0697037754","GOC:jid","ISBN:0709408862"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of post-embryonic development","termid":"GO:0048581"},{"relation_name":"is_a","term_name":"negative regulation of response to stimulus","termid":"GO:0048585"},{"relation_name":"is_a","term_name":"regulation of long-day photoperiodism, flowering","termid":"GO:0048586"},{"relation_name":"is_a","term_name":"negative regulation of reproductive process","termid":"GO:2000242"},{"relation_name":"negatively_regulates","term_name":"long-day photoperiodism, flowering","termid":"GO:0048574"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of long-day photoperiodism, flowering","synonyms":[{"name":"down regulation of long-day photoperiodism, flowering","type":"exact"},{"name":"down-regulation of long-day photoperiodism, flowering","type":"exact"},{"name":"downregulation of long-day photoperiodism, flowering","type":"exact"},{"name":"inhibition of long-day photoperiodism, flowering","type":"narrow"}],"termid":"GO:0048579"}


id: PBO:0003512
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"WD repeat protein, human WDR6 family, implicated in cell cycle","termid":"PBO:0003512"}


id: PBO:0071607
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L36a pseudogene 25","termid":"PBO:0071607"}


id: FYPO:0002988
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A phenotype observed in the vegetative growth phase of the life cycle in which cells show increased sensitivity to ammonium. Cells stop growing (and may die) at a concentration of ammonium that allows wild type cells to grow.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased sensitivity to chemical during vegetative growth","termid":"FYPO:0000127"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000139"},{"rel_name":"is_a","termid":"FYPO:0000003"},{"rel_name":"is_a","termid":"FYPO:0002683"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0000139","FYPO:0000003","FYPO:0005447","FYPO:0002683","FYPO:0001985"],"is_obsolete":false,"name":"sensitive to ammonium","synonyms":[{"name":"hypersensitive to ammonium","type":"exact"},{"name":"sensitive to NH4+","type":"related"},{"name":"sensitive to ammonium during mitotic cell cycle","type":"related"},{"name":"sensitive to ammonium during vegetative growth","type":"exact"}],"termid":"FYPO:0002988"}


id: GO:0034316
data:
  {"annotated_genes":["SJAG_03455"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[74030],"is_not":false,"summary":null,"term":"GO:0034316"}]},"cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of actin nucleation mediated by the Arp2/3 complex and interacting proteins.","definition_xrefs":["PMID:16959963","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of Arp2/3 complex-mediated actin nucleation","termid":"GO:0034315"},{"relation_name":"is_a","term_name":"negative regulation of actin nucleation","termid":"GO:0051126"},{"relation_name":"negatively_regulates","term_name":"Arp2/3 complex-mediated actin nucleation","termid":"GO:0034314"}],"gene_count":1,"genes_by_uniquename":{"SJAG_03455":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"negatively_regulates","termid":"GO:0007010"},{"rel_name":"regulates","termid":"GO:0007010"},{"rel_name":"regulates","termid":"GO:0030036"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0007010","GO:0008150","GO:0030036"],"is_obsolete":false,"name":"negative regulation of Arp2/3 complex-mediated actin nucleation","references_by_uniquename":{"PMID:21873635":null},"termid":"GO:0034316","terms_by_termid":{"GO:0034316":null}}


id: PBO:0048316
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glyceraldehyde 3 phosphate dehydrogenase pseudogene 27","termid":"PBO:0048316"}


id: GO:0032715
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate, or extent of interleukin-6 production.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of cytokine production","termid":"GO:0001818"},{"relation_name":"is_a","term_name":"regulation of interleukin-6 production","termid":"GO:0032675"},{"relation_name":"negatively_regulates","term_name":"interleukin-6 production","termid":"GO:0032635"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0010467"},{"rel_name":"negatively_regulates","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0008150","GO:0010467"],"is_obsolete":false,"name":"negative regulation of interleukin-6 production","secondary_identifiers":["GO:1900165","GO:0045409"],"synonyms":[{"name":"down regulation of interleukin-6 production","type":"exact"},{"name":"down-regulation of interleukin-6 production","type":"exact"},{"name":"downregulation of interleukin-6 production","type":"exact"},{"name":"inhibition of interleukin-6 production","type":"narrow"},{"name":"negative regulation of IL-6 production","type":"exact"},{"name":"negative regulation of interleukin-6 biosynthetic process","type":"narrow"},{"name":"negative regulation of interleukin-6 secretion","type":"narrow"}],"termid":"GO:0032715"}


id: GO:0019964
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to type II interferon, also known as interferon-gamma.","definition_xrefs":["GOC:add","ISBN:0126896631","GOC:ai","PMID:15546383"],"direct_ancestors":[{"relation_name":"is_a","term_name":"interferon binding","termid":"GO:0019961"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005515"}],"interesting_parent_ids":["GO:0005488","GO:0005515","GO:0003674"],"is_obsolete":false,"name":"type II interferon binding","synonyms":[{"name":"IFN-gamma binding","type":"exact"},{"name":"IFNG binding","type":"exact"},{"name":"interferon-gamma binding","type":"broad"}],"termid":"GO:0019964"}


id: PBO:0075238
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SNX9 antisense RNA 1","termid":"PBO:0075238"}


id: PBO:0050577
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"heparan sulfate-glucosamine 3-sulfotransferase 2","termid":"PBO:0050577"}


id: GO:0004610
data:
  {"annotated_genes":["SJAG_03723","SJAG_00978"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[71035,72146],"is_not":false,"summary":null,"term":"GO:0004610"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: N-acetyl-alpha-D-glucosamine 1-phosphate = N-acetyl-D-glucosamine 6-phosphate.","definition_xrefs":["EC:5.4.2.3","RHEA:23804"],"direct_ancestors":[{"relation_name":"is_a","term_name":"intramolecular phosphotransferase activity","termid":"GO:0016868"}],"gene_count":2,"genes_by_uniquename":{"SJAG_00978":null,"SJAG_03723":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016853"}],"interesting_parent_ids":["GO:0003824","GO:0016853","GO:0003674"],"is_obsolete":false,"name":"phosphoacetylglucosamine mutase activity","references_by_uniquename":{"PMID:21873635":null},"secondary_identifiers":["KEGG_REACTION:R08193","MetaCyc:PHOSACETYLGLUCOSAMINEMUT-RXN","Reactome:R-HSA-446185"],"synonyms":[{"name":"N-acetyl-D-glucosamine 1,6-phosphomutase activity","type":"related"},{"name":"N-acetyl-alpha-D-glucosamine 1,6-phosphomutase activity","type":"related"},{"name":"N-acetylglucosamine-phosphate mutase activity","type":"related"},{"name":"acetylaminodeoxyglucose phosphomutase activity","type":"related"},{"name":"acetylglucosamine phosphomutase activity","type":"related"},{"name":"phospho-N-acetylglucosamine mutase activity","type":"related"}],"termid":"GO:0004610","terms_by_termid":{"GO:0004610":null}}


id: PBO:0049930
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"hedgehog acyltransferase like","termid":"PBO:0049930"}


id: PBO:0067292
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 377, pseudogene","termid":"PBO:0067292"}


id: PBO:0018014
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CENP-S ortholog, FANCM-MHF complex subunit Mhf1","termid":"PBO:0018014"}


id: PR:Q0E7J7
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- stn1 gene.","definition_xrefs":["UniProtKB:Q0E7J7","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protein stn1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC409.12c","synonyms":[{"name":"Spom972h-stn1","type":"exact"}],"termid":"PR:Q0E7J7"}


id: GO:0000109
data:
  {"annotated_genes":["SJAG_02556","SJAG_03613","SJAG_03206","SJAG_02828","SJAG_04540","SJAG_03454","SJAG_01887","SJAG_00995","SJAG_00500","SJAG_04147","SJAG_01049","SJAG_03618","SJAG_00512","SJAG_02334","SJAG_01480","SJAG_00901","SJAG_03612"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[111834,111835,111856],"is_not":false,"summary":null,"term":"GO:0000109"},{"annotations":[86549,106411],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0070912"},{"annotations":[86550,84134],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0070913"},{"annotations":[70214,74394,106094],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0000110"},{"annotations":[72574,72194],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0000111"},{"annotations":[85967,107334,98580,87806,85607],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0000112"},{"annotations":[106504],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0000113"},{"annotations":[72195,72575],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0071942"}]},"cv_name":"cellular_component","definition":"Any complex formed of proteins that act in nucleotide-excision repair.","definition_xrefs":["PMID:10915862"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nuclear protein-containing complex","termid":"GO:0140513"}],"gene_count":17,"genes_by_uniquename":{"SJAG_00500":null,"SJAG_00512":null,"SJAG_00901":null,"SJAG_00995":null,"SJAG_01049":null,"SJAG_01480":null,"SJAG_01887":null,"SJAG_02334":null,"SJAG_02556":null,"SJAG_02828":null,"SJAG_03206":null,"SJAG_03454":null,"SJAG_03612":null,"SJAG_03613":null,"SJAG_03618":null,"SJAG_04147":null,"SJAG_04540":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0005634"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0032991","GO:0005634","GO:0005575"],"is_obsolete":false,"name":"nucleotide-excision repair complex","references_by_uniquename":{"GO_REF:0000107":null,"PMID:21873635":null},"synonyms":[{"name":"UvrB-UvrC complex","type":"narrow"},{"name":"UvrBC complex","type":"narrow"}],"termid":"GO:0000109","terms_by_termid":{"GO:0000109":null,"GO:0000110":null,"GO:0000111":null,"GO:0000112":null,"GO:0000113":null,"GO:0070912":null,"GO:0070913":null,"GO:0071942":null}}


id: PATO:0001803
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A photosensitivity quality inhering in a bearer by virtue of the bearer's disposition to being susceptible to damage by light.","definition_xrefs":["answers.com:answers.com"],"direct_ancestors":[{"relation_name":"is_a","term_name":"photosensitivity","termid":"PATO:0000927"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"phototoxic","termid":"PATO:0001803"}


id: PBO:0044719
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DEAD/H-box helicase 11 like 6 (pseudogene)","termid":"PBO:0044719"}


id: GO:0033825
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the transfer of the non-reducing terminal alpha-D-glucose residue from a 1,4-alpha-D-glucan to the 4-position of an alpha-D-glucan, thus bringing about the hydrolysis of oligosaccharides.","definition_xrefs":["EC:2.4.1.161"],"direct_ancestors":[{"relation_name":"is_a","term_name":"glucosyltransferase activity","termid":"GO:0046527"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016757"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016740"}],"interesting_parent_ids":["GO:0016757","GO:0003674","GO:0016740","GO:0003824"],"is_obsolete":false,"name":"oligosaccharide 4-alpha-D-glucosyltransferase activity","secondary_identifiers":["MetaCyc:2.4.1.161-RXN"],"synonyms":[{"name":"1,4-alpha-D-glucan:1,4-alpha-D-glucan 4-alpha-D-glucosyltransferase activity","type":"related"},{"name":"1,4-alpha-glucan:1,4-alpha-glucan 4-alpha-glucosyltransferase activity","type":"related"},{"name":"amylase III activity","type":"related"}],"termid":"GO:0033825"}


id: PBO:0089755
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glucose-6-phosphate 1-dehydrogenase","termid":"PBO:0089755"}


id: PBO:0070897
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L17 pseudogene 5","termid":"PBO:0070897"}


id: PBO:0047788
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"forkhead box D4 like 5","termid":"PBO:0047788"}


id: PBO:0090371
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"GTP binding protein Bms1","termid":"PBO:0090371"}


id: GO:0052895
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: N1-acetylspermine + oxygen + H2O = N1-acetylspermidine + 3-aminopropanal + hydrogen peroxide.","definition_xrefs":["MetaCyc:POLYAMINE-OXIDASE-RXN"],"direct_ancestors":[{"relation_name":"is_a","term_name":"polyamine oxidase activity","termid":"GO:0046592"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016491"],"is_obsolete":false,"name":"N1-acetylspermine:oxygen oxidoreductase (N1-acetylspermidine-forming) activity","secondary_identifiers":["EC:1.5.3.16","RHEA:16133"],"synonyms":[{"name":"N1-acetylspermine oxidase activity","type":"broad"}],"termid":"GO:0052895"}


id: GO:0039723
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process in which a symbiont stops, prevents, or reduces a cytoplasmic pattern recognition receptor signaling pathway in a host organism by reducing the activity of a host serine/threonine kinase TBK1.","definition_xrefs":["PMID:22171259","PMID:34084167"],"direct_ancestors":[{"relation_name":"is_a","term_name":"symbiont-mediated suppression of cytoplasmic pattern recognition receptor signaling pathway","termid":"GO:0039537"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"symbiont-mediated suppression of host cytoplasmic pattern recognition receptor signaling pathway via inhibition of TBK1 activity","secondary_identifiers":["VZ:4477"],"synonyms":[{"name":"inhibition of host TBK1 by virus","type":"related"},{"name":"suppression by virus of host TBK1 activity","type":"related"},{"name":"suppression by virus of host viral-induced cytoplasmic pattern recognition receptor signaling pathway via inhibition of TBK1 activity","type":"narrow"}],"termid":"GO:0039723"}


id: PBO:0071299
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L26 pseudogene 22","termid":"PBO:0071299"}


id: GO:0070985
data:
  {"annotated_genes":["SJAG_00150","SJAG_04614","SJAG_03618"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[75352,107336,108199],"is_not":false,"summary":null,"term":"GO:0070985"}]},"cv_name":"cellular_component","definition":"A transcription factor complex that forms part of the holo TFIIH complex. In Saccharomyces/human, TFIIK contains Ccl1p/Cyclin H, Tfb3p/MAT1 and Kin28p/CDK7.","definition_xrefs":["GOC:mah","PMID:19818408","PMID:22572993"],"direct_ancestors":[{"relation_name":"is_a","term_name":"RNA polymerase II transcription regulator complex","termid":"GO:0090575"},{"relation_name":"part_of","term_name":"transcription factor TFIIH holo complex","termid":"GO:0005675"}],"gene_count":3,"genes_by_uniquename":{"SJAG_00150":null,"SJAG_03618":null,"SJAG_04614":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0005654"},{"rel_name":"part_of","termid":"GO:0005634"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0032991","GO:0005654","GO:0005634","GO:0005575"],"is_obsolete":false,"name":"transcription factor TFIIK complex","references_by_uniquename":{"GO_REF:0000107":null,"PMID:21873635":null},"synonyms":[{"name":"Mcs6/Mcs2/Pmh1 complex","type":"narrow"},{"name":"TFIIK complex","type":"exact"},{"name":"cyclin H-CDK7 complex","type":"related"}],"termid":"GO:0070985","terms_by_termid":{"GO:0070985":null}}


id: PBO:0003511
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ER protein translocation subcomplex subunit Sec66 (predicted)","termid":"PBO:0003511"}


id: GO:0102507
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: cyanidin 3-O-beta-D-glucoside betaine + 1-O-4-hydroxybenzoyl-beta-D-glucose = cyanidin 3,7-di-O-beta-D-glucoside betaine + 4-hydroxybenzoic acid + H+.","definition_xrefs":["EC:2.4.1.300","GOC:pz"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hexosyltransferase activity","termid":"GO:0016758"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016757"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003824","GO:0016757","GO:0016740","GO:0003674"],"is_obsolete":false,"name":"cyanidin 3-O-glucoside 7-O-glucosyltransferase (hydroxybenzoly-glucose dependent) activity","secondary_identifiers":["MetaCyc:RXN-14434"],"termid":"GO:0102507"}


id: PBO:0054473
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1873","termid":"PBO:0054473"}


id: PBO:0045552
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dual specificity phosphatase 5 pseudogene 1","termid":"PBO:0045552"}


id: PBO:0051734
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"integrator complex subunit 5","termid":"PBO:0051734"}


id: PBO:0072815
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sterile alpha motif domain containing 10","termid":"PBO:0072815"}


id: GO:1902290
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of defense response to oomycetes.","definition_xrefs":["GOC:TermGenie","PMID:16040633"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of response to biotic stimulus","termid":"GO:0002833"},{"relation_name":"is_a","term_name":"positive regulation of defense response","termid":"GO:0031349"},{"relation_name":"is_a","term_name":"positive regulation of response to external stimulus","termid":"GO:0032103"},{"relation_name":"is_a","term_name":"regulation of defense response to oomycetes","termid":"GO:1902288"},{"relation_name":"positively_regulates","term_name":"defense response to oomycetes","termid":"GO:0002229"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of defense response to oomycetes","synonyms":[{"name":"activation of defense response to oomycetes","type":"narrow"},{"name":"up regulation of defense response to oomycetes","type":"exact"},{"name":"up-regulation of defense response to oomycetes","type":"exact"},{"name":"upregulation of defense response to oomycetes","type":"exact"}],"termid":"GO:1902290"}


id: FYPO:0005590
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of cardiolipin measured in a cell is normal (i.e. indistinguishable from wild type).","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal cellular phosphorus level","termid":"FYPO:0001543"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0001312"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0001312","FYPO:0000002","FYPO:0000257","FYPO:0001320"],"is_obsolete":false,"name":"normal cellular cardiolipin level","synonyms":[{"name":"normal cellular cardiolipin accumulation","type":"related"},{"name":"normal cellular cardiolipin level during mitotic cell cycle","type":"related"},{"name":"normal cellular cardiolipin level during vegetative growth","type":"exact"}],"termid":"FYPO:0005590"}


id: MOD:01248
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that is produced by reaction of iodouridine monophosphate with an L-tyrosine residue to form an ether linkage.","definition_xrefs":["PubMed:6540775","PubMed:11112526","Unimod:292#Y","PubMed:11567090"],"direct_ancestors":[{"relation_name":"is_a","term_name":"iodouridine monophosphate derivatized residue","termid":"MOD:00611"},{"relation_name":"is_a","term_name":"modified L-tyrosine residue","termid":"MOD:00919"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"iodouridine monophosphate derivatized tyrosine","synonyms":[{"name":"Cross-link of (Iodo)-uracil MP with W,F,Y","type":"related"},{"name":"IodoU-AMP","type":"related"}],"termid":"MOD:01248"}


id: GO:1902198
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving 3-methylbut-2-enoyl-CoA(4-).","definition_xrefs":["GOC:TermGenie","PMID:11231285"],"direct_ancestors":[{"relation_name":"is_a","term_name":"fatty-acyl-CoA metabolic process","termid":"GO:0035337"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006790"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0055086"},{"rel_name":"is_a","termid":"GO:0006629"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0006629","GO:0008150","GO:0044281","GO:0006790","GO:0055086"],"is_obsolete":false,"name":"3-methylbut-2-enoyl-CoA(4-) metabolic process","synonyms":[{"name":"3-methylbut-2-enoyl-CoA(4-) metabolism","type":"exact"}],"termid":"GO:1902198"}


id: PBO:0078491
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-Ile (anticodon AAT) 10-1","termid":"PBO:0078491"}


id: FYPO:0003298
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the occurrence of autophosphorylation of one or more specific proteins, or of specific protein sites, is decreased.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased protein phosphorylation during vegetative growth","termid":"FYPO:0001838"},{"relation_name":"is_a","term_name":"abnormal protein autophosphorylation during vegetative growth","termid":"FYPO:0003019"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0002274"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0002494"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0001985","FYPO:0000002","FYPO:0005447","FYPO:0002494","FYPO:0002274"],"is_obsolete":false,"name":"decreased protein autophosphorylation during vegetative growth","synonyms":[{"name":"decreased protein autophosphorylation during mitotic cell cycle","type":"related"},{"name":"reduced protein autophosphorylation during vegetative growth","type":"exact"}],"termid":"FYPO:0003298"}


id: GO:0051427
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a receptor for a hormone.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"signaling receptor binding","termid":"GO:0005102"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005515"},{"rel_name":"is_a","termid":"GO:0005488"}],"interesting_parent_ids":["GO:0005515","GO:0003674","GO:0005488"],"is_obsolete":false,"name":"hormone receptor binding","termid":"GO:0051427"}


id: GO:1901463
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of tetrapyrrole biosynthetic process.","definition_xrefs":["GOC:mengo_curators","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of cellular biosynthetic process","termid":"GO:0031326"},{"relation_name":"is_a","term_name":"regulation of tetrapyrrole metabolic process","termid":"GO:1901401"},{"relation_name":"regulates","term_name":"tetrapyrrole biosynthetic process","termid":"GO:0033014"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0033013"}],"interesting_parent_ids":["GO:0008150","GO:0033013"],"is_obsolete":false,"name":"regulation of tetrapyrrole biosynthetic process","synonyms":[{"name":"regulation of tetrapyrrole anabolism","type":"exact"},{"name":"regulation of tetrapyrrole biosynthesis","type":"exact"},{"name":"regulation of tetrapyrrole formation","type":"exact"},{"name":"regulation of tetrapyrrole synthesis","type":"exact"}],"termid":"GO:1901463"}


id: PBO:0085494
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protease that specifically cleaves Smt3p protein conjugates; required for cell cycle progression; associates with nucleoporins and may interact with septin rings during telophase; contributes to regulation of telomeric silencing; sequestered to the nucleolus under stress conditions","termid":"PBO:0085494"}


id: PBO:0027741
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_number_of_Rad52_foci_during_cellular_response_to_camptothecin","termid":"PBO:0027741"}


id: PBO:0002369
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SNARE Sec20 (predicted)","termid":"PBO:0002369"}


id: PBO:0091835
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial matrix protein, YjgF family protein Mmf1, reactive intermediate imine deaminase A homolog Mmf1","termid":"PBO:0091835"}


id: PBO:0071266
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L23 pseudogene 11","termid":"PBO:0071266"}


id: PBO:0029153
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_growth_on_cumene_hydroperoxide","termid":"PBO:0029153"}


id: PBO:0064471
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DNA polymerase epsilon 2, accessory subunit","termid":"PBO:0064471"}


id: PBO:0079207
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tumor suppressing subtransferable candidate 4","termid":"PBO:0079207"}


id: PBO:0078775
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-Asn (anticodon GTT) 2-7","termid":"PBO:0078775"}


id: PBO:0060484
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Nanog homeobox pseudogene 6","termid":"PBO:0060484"}


id: GO:1903637
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of protein insertion into mitochondrial outer membrane.","definition_xrefs":["PMID:16374546","GO_REF:0000058","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of mitochondrion organization","termid":"GO:0010823"},{"relation_name":"is_a","term_name":"negative regulation of intracellular protein transport","termid":"GO:0090317"},{"relation_name":"is_a","term_name":"negative regulation of protein targeting to mitochondrion","termid":"GO:1903215"},{"relation_name":"is_a","term_name":"regulation of protein insertion into mitochondrial outer membrane","termid":"GO:1903636"},{"relation_name":"is_a","term_name":"negative regulation of protein localization to membrane","termid":"GO:1905476"},{"relation_name":"negatively_regulates","term_name":"protein insertion into mitochondrial outer membrane","termid":"GO:0045040"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"negatively_regulates","termid":"GO:0007005"},{"rel_name":"negatively_regulates","termid":"GO:0061024"},{"rel_name":"regulates","termid":"GO:0061024"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"negatively_regulates","termid":"GO:0006605"},{"rel_name":"regulates","termid":"GO:0007005"},{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"regulates","termid":"GO:0006605"},{"rel_name":"negatively_regulates","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0008150","GO:0006605","GO:0007005","GO:0061024","GO:0006810"],"is_obsolete":false,"name":"negative regulation of protein insertion into mitochondrial outer membrane","synonyms":[{"name":"down regulation of mitochondrial outer membrane protein import","type":"exact"},{"name":"down regulation of protein import into mitochondrial outer membrane","type":"exact"},{"name":"down regulation of protein insertion into mitochondrial outer membrane","type":"exact"},{"name":"down regulation of protein transport into mitochondrial outer membrane","type":"exact"},{"name":"down-regulation of mitochondrial outer membrane protein import","type":"exact"},{"name":"down-regulation of protein import into mitochondrial outer membrane","type":"exact"},{"name":"down-regulation of protein insertion into mitochondrial outer membrane","type":"exact"},{"name":"down-regulation of protein transport into mitochondrial outer membrane","type":"exact"},{"name":"downregulation of mitochondrial outer membrane protein import","type":"exact"},{"name":"downregulation of protein import into mitochondrial outer membrane","type":"exact"},{"name":"downregulation of protein insertion into mitochondrial outer membrane","type":"exact"},{"name":"downregulation of protein transport into mitochondrial outer membrane","type":"exact"},{"name":"inhibition of mitochondrial outer membrane protein import","type":"narrow"},{"name":"inhibition of protein import into mitochondrial outer membrane","type":"narrow"},{"name":"inhibition of protein insertion into mitochondrial outer membrane","type":"narrow"},{"name":"inhibition of protein transport into mitochondrial outer membrane","type":"narrow"},{"name":"negative regulation of mitochondrial outer membrane protein import","type":"exact"},{"name":"negative regulation of protein import into mitochondrial outer membrane","type":"exact"},{"name":"negative regulation of protein transport into mitochondrial outer membrane","type":"exact"}],"termid":"GO:1903637"}


id: FYPO:0000082
data:
  {"alleles_by_uniquename":{"SJAG_02527:allele-1":{"allele_type":"disruption","description":"RNA sequencing revealed that only the 5' end of the disrupted allele showed low RNA expression and coverage","gene_uniquename":"SJAG_02527","name":"lig4::KanMX6","uniquename":"SJAG_02527:allele-1"},"SJAG_04464:allele-1":{"allele_type":"amino_acid_mutation","description":"R152C","gene_uniquename":"SJAG_04464","name":"pim1-R152C","synonyms":[{"name":"Inferred CDK-phospho-mimic mutation","reference":"PMID:28954740","type":"exact"}],"uniquename":"SJAG_04464:allele-1"},"SJAG_04697:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_04697","name":"gms1delta","uniquename":"SJAG_04697:allele-1"}},"annotation_feature_type":"genotype","cv_annotations":{"single_locus_phenotype":[{"annotations":[114434,114654],"is_not":false,"summary":null,"term":"FYPO:0000082"},{"annotations":[114336],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0001408"}]},"cv_name":"fission_yeast_phenotype","definition":"A cell population phenotype in which the growth of a population of cells is decreased relative to normal in the vegetative growth phase of the life cycle at high temperatures.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased vegetative cell population growth","termid":"FYPO:0001355"}],"gene_count":3,"genes_by_uniquename":{"SJAG_02527":null,"SJAG_04464":null,"SJAG_04697":null},"genotype_count":3,"genotypes_by_uniquename":{"gms1delta":{"display_name":"gms1delta","display_uniquename":"gms1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04697:allele-1","expression":"Null"}]}]},"lig4::KanMX6-RNA_sequencing_revealed_that_only_the_5'_end_of_the_disrupted_allele_showed_low_RNA_expression_and_coverage-disruption-expression-knockdown":{"display_name":"lig4::KanMX6(RNA sequencing revealed that only the 5' end of the disrupted allele showed low RNA expression and coverage)[Knockdown]","display_uniquename":"lig4::KanMX6-RNA_sequencing_revealed_that_only_the_5'_end_of_the_disrupted_allele_showed_low_RNA_expression_and_coverage-disruption-expression-knockdown","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_02527:allele-1","expression":"Knockdown"}]}]},"pim1-R152C-R152C-amino_acid_mutation-expression-not_assayed_or_wild_type":{"display_name":"pim1-R152C(aa)","display_uniquename":"pim1-R152C-R152C-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04464:allele-1","expression":"Not assayed or wild type"}]}]}},"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0002057"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0002060"},{"rel_name":"is_a","termid":"FYPO:0000139"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000003"},{"rel_name":"is_a","termid":"FYPO:0002058"}],"interesting_parent_ids":["FYPO:0000003","FYPO:0005447","FYPO:0002057","FYPO:0000139","FYPO:0001985","FYPO:0002060","FYPO:0002058"],"is_obsolete":false,"name":"decreased cell population growth at high temperature","references_by_uniquename":{"PMID:28954740":null,"PMID:36058798":null,"PMID:37233261":null},"secondary_identifiers":["FYPO:0000247"],"single_locus_annotated_genes":["SJAG_04697","SJAG_04464","SJAG_02527"],"single_locus_genotype_uniquenames":["gms1delta","lig4::KanMX6-RNA_sequencing_revealed_that_only_the_5'_end_of_the_disrupted_allele_showed_low_RNA_expression_and_coverage-disruption-expression-knockdown","pim1-R152C-R152C-amino_acid_mutation-expression-not_assayed_or_wild_type"],"synonyms":[{"name":"decreased cell population growth at high temperature during mitotic cell cycle","type":"related"},{"name":"decreased growth at high temperature","type":"broad"},{"name":"decreased vegetative cell population growth at high temperature","type":"exact"},{"name":"growth defect, slow growth at high temperatures","type":"narrow"},{"name":"heat sensitive","type":"related"},{"name":"heat sensitivity: increased","type":"related"},{"name":"hypersensitive to high temperature","type":"related"},{"name":"reduced growth at high temperature","type":"exact"},{"name":"sensitive to heat","type":"related"},{"name":"sensitive to high temperature","type":"related"},{"name":"sensitive to high temperature during vegetative growth","type":"related"},{"name":"slow growth at high temperature","type":"narrow"},{"name":"temperature sensitive","type":"related"}],"termid":"FYPO:0000082","terms_by_termid":{"FYECO:0000004":null,"FYECO:0000117":null,"FYECO:0000137":null,"FYPO:0000082":null,"FYPO:0001408":null,"FYPO_EXT:0000002":null}}


id: GO:0015863
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The directed movement of xanthosine, xanthine riboside, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.","definition_xrefs":["ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nucleoside transport","termid":"GO:0015858"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0051179"}],"interesting_parent_ids":["GO:0051179","GO:0006810","GO:0008150"],"is_obsolete":false,"name":"xanthosine transport","termid":"GO:0015863"}


id: PBO:0053055
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"leucyl-tRNA synthetase 1","termid":"PBO:0053055"}


id: PBO:0067725
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 5S ribosomal pseudogene 23","termid":"PBO:0067725"}


id: GO:0071911
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Release of neurotransmitter at the synapse that lasts for just a few milliseconds after action potential invasion.","definition_xrefs":["GOC:dsf","PMID:20643933","PMID:19477156"],"direct_ancestors":[{"relation_name":"is_a","term_name":"neurotransmitter secretion","termid":"GO:0007269"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"part_of","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0051179","GO:0006810","GO:0023052","GO:0008150"],"is_obsolete":false,"name":"synchronous neurotransmitter secretion","termid":"GO:0071911"}


id: PBO:0012285
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Ric8 family guanine nucleotide exchange factor synembryn family","termid":"PBO:0012285"}


id: PBO:0090179
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"vacuolar phytochelatin and glutathione S-conjugate ABC family transmembrane transporter Hmt1","termid":"PBO:0090179"}


id: GO:0044639
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. A process that begins with venom being forced into an organism by the bite or sting of another organism, and ends with the resultant modulation of complement activation via the lectin pathway in the bitten/stung organism.","definition_xrefs":["GOC:fj","GOC:jl","PMID:20837040"],"gene_count":0,"genotype_count":0,"name":"obsolete envenomation resulting in modulation of complement activation, lectin pathway in another organism (obsolete GO:0044639)","synonyms":[{"name":"envenomation resulting in modulation of complement activation, lectin pathway in other organism","type":"exact"},{"name":"envenomation resulting in regulation of complement activation, lectin pathway in other organism","type":"exact"}],"termid":"GO:0044639"}


id: PBO:0072204
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein S18 pseudogene 3","termid":"PBO:0072204"}


id: SO:0002325
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A splice_donor_variant (SO:0001575) that is degraded by nonsense-mediated decay (NMD).","definition_xrefs":["GenCC:AR"],"direct_ancestors":[{"relation_name":"is_a","term_name":"splice_donor_variant","termid":"SO:0001575"},{"relation_name":"is_a","term_name":"NMD_triggering_variant","termid":"SO:0002319"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"splice_donor_variant_NMD_triggering","synonyms":[{"name":"splice donor variant-NMD triggering","type":"exact"},{"name":"splice donor variant-nonsense-mediated decay triggering","type":"exact"}],"termid":"SO:0002325"}


id: GO:0071962
data:
  {"annotated_genes":["SJAG_01601"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[94655],"is_not":false,"summary":null,"term":"GO:0071962"}]},"cv_name":"biological_process","definition":"The cell cycle process in which centromeres of sister chromatids are joined during mitosis.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mitotic sister chromatid cohesion","termid":"GO:0007064"},{"relation_name":"is_a","term_name":"centromeric sister chromatid cohesion","termid":"GO:0070601"}],"gene_count":1,"genes_by_uniquename":{"SJAG_01601":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0007049"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0007049","GO:0008150"],"is_obsolete":false,"name":"mitotic sister chromatid cohesion, centromeric","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"centromeric mitotic sister chromatin cohesion","type":"exact"},{"name":"mitotic sister chromatid cohesion at centromere","type":"exact"},{"name":"sister chromatid cohesion at centromere at mitosis","type":"exact"}],"termid":"GO:0071962","terms_by_termid":{"GO:0071962":null}}


id: PBO:0000870
data:
  {"annotation_feature_type":"gene","cv_name":"disease_associated","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glutathionuria","termid":"PBO:0000870"}


id: FYPO:0005831
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which protein transport along microtubules to the cell tip is abnormal. Transport of all proteins or a specific protein may be affected.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal protein localization to cell tip during vegetative growth","termid":"FYPO:0001584"},{"relation_name":"is_a","term_name":"abnormal protein transport along microtubule during vegetative growth","termid":"FYPO:0005830"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001320","FYPO:0005447","FYPO:0001985","FYPO:0000138"],"is_obsolete":false,"name":"abnormal protein transport along microtubule to cell tip during vegetative growth","synonyms":[{"name":"abnormal protein movement along microtubule to cell tip during vegetative growth","type":"exact"},{"name":"abnormal protein transport during mitotic cell cycle","type":"related"}],"termid":"FYPO:0005831"}


id: GO:0070738
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the posttranslational transfer of one or more glycine residues to a specific glutamate residue on a target tubulin molecule; acts on alpha or beta tubulin.","definition_xrefs":["GOC:mah","PMID:19524510"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein-glycine ligase activity","termid":"GO:0070735"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0140096"},{"rel_name":"is_a","termid":"GO:0016874"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016874","GO:0140096"],"is_obsolete":false,"name":"tubulin-glycine ligase activity","synonyms":[{"name":"tubulin glycylase activity","type":"exact"}],"termid":"GO:0070738"}


id: GO:0050945
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of iridophore differentiation.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of iridophore differentiation","termid":"GO:0050937"},{"relation_name":"is_a","term_name":"positive regulation of pigment cell differentiation","termid":"GO:0050942"},{"relation_name":"positively_regulates","term_name":"iridophore differentiation","termid":"GO:0050935"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of iridophore differentiation","synonyms":[{"name":"activation of iridophore differentiation","type":"narrow"},{"name":"stimulation of iridophore differentiation","type":"narrow"},{"name":"up regulation of iridophore differentiation","type":"exact"},{"name":"up-regulation of iridophore differentiation","type":"exact"},{"name":"upregulation of iridophore differentiation","type":"exact"}],"termid":"GO:0050945"}


id: SO:0000465
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A chromosome deletion whereby a chromosome is generated by recombination between two inversions; there is a deficiency at one end of the inversion and a duplication at the other end of the inversion.","definition_xrefs":["FB:km"],"direct_ancestors":[{"relation_name":"is_a","term_name":"chromosomal_deletion","termid":"SO:1000029"},{"relation_name":"is_a","term_name":"intrachromosomal_duplication","termid":"SO:1000038"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"inversion_derived_deficiency_plus_duplication","synonyms":[{"name":"inversion derived deficiency plus duplication","type":"exact"}],"termid":"SO:0000465"}


id: PBO:0068729
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U4atac small nuclear 18, pseudogene","termid":"PBO:0068729"}


id: GO:0030493
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving a bacteriochlorophyll, any of the chlorophylls of photosynthetic bacteria. They differ structurally from the chlorophylls of higher plants.","definition_xrefs":["ISBN:0198506732","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"chlorophyll metabolic process","termid":"GO:0015994"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0033013"}],"interesting_parent_ids":["GO:0033013","GO:0008150"],"is_obsolete":false,"name":"bacteriochlorophyll metabolic process","synonyms":[{"name":"bacteriochlorophyll metabolism","type":"exact"}],"termid":"GO:0030493"}


id: GO:0006837
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The directed movement of serotonin into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Serotonin (5-hydroxytryptamine) is a monoamine neurotransmitter occurring in the peripheral and central nervous systems.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"monoamine transport","termid":"GO:0015844"},{"relation_name":"is_a","term_name":"organic hydroxy compound transport","termid":"GO:0015850"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0006810","GO:0051179","GO:0008150"],"is_obsolete":false,"name":"serotonin transport","termid":"GO:0006837"}


id: GO:0015558
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Enables the transfer of p-aminobenzoyl-glutamate from one side of a membrane to the other, up its concentration gradient. The transporter binds the solute and undergoes a series of conformational changes. Transport works equally well in either direction and is driven by a chemiosmotic source of energy. Secondary active transporters include symporters and antiporters. p-aminobenzoyl-glutamate is the anion of p-aminobenzoyl-glutamic acid.","definition_xrefs":["RHEA:35043","GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"dicarboxylic acid transmembrane transporter activity","termid":"GO:0005310"},{"relation_name":"is_a","term_name":"secondary active transmembrane transporter activity","termid":"GO:0015291"},{"relation_name":"is_a","term_name":"dipeptide transmembrane transporter activity","termid":"GO:0071916"},{"relation_name":"is_a","term_name":"modified amino acid transmembrane transporter activity","termid":"GO:0072349"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0005215"}],"interesting_parent_ids":["GO:0003674","GO:0005215","GO:0022857"],"is_obsolete":false,"name":"secondary active p-aminobenzoyl-glutamate transmembrane transporter activity","secondary_identifiers":["GO:0015569"],"synonyms":[{"name":"p-aminobenzoyl-glutamate transmembrane transporter activity","type":"narrow"},{"name":"p-aminobenzoyl-glutamate transporter activity","type":"related"},{"name":"p-aminobenzoyl-glutamate uptake permease activity","type":"related"},{"name":"p-aminobenzoyl-glutamate uptake transmembrane transporter activity","type":"related"}],"termid":"GO:0015558"}


id: PBO:0064282
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pleckstrin homology domain containing M3","termid":"PBO:0064282"}


id: GO:0045051
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process of protein insertion into the endoplasmic reticulum (ER) membrane in which signal anchor sequences function as both ER signal sequences and membrane anchor sequences.","definition_xrefs":["ISBN:0716731363"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein insertion into ER membrane","termid":"GO:0045048"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0061024"}],"interesting_parent_ids":["GO:0008150","GO:0061024","GO:0051179"],"is_obsolete":false,"name":"protein insertion into ER membrane by internal uncleaved signal-anchor sequence","synonyms":[{"name":"internal uncleaved signal-anchor sequence mediated protein insertion into ER membrane","type":"exact"},{"name":"protein insertion into ER membrane, internal uncleaved signal-anchor sequence mediated","type":"exact"},{"name":"protein insertion into endoplasmic reticulum membrane by internal uncleaved signal-anchor sequence","type":"exact"},{"name":"protein-ER insertion by internal uncleaved signal-anchor sequence","type":"exact"},{"name":"protein-endoplasmic reticulum insertion by internal uncleaved signal-anchor sequence","type":"exact"}],"termid":"GO:0045051"}


id: GO:0071989
data:
  {"annotated_genes":["SJAG_05220","SJAG_01371","SJAG_01211","SJAG_05266","SJAG_05319","SJAG_02731","SJAG_01224","SJAG_00918","SJAG_01775","SJAG_01546","SJAG_03437"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[104214,84888,85469,94159,105199,112054,109311,92343,102862,86666,96003],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1990976"}]},"cv_name":"biological_process","definition":"The directed movement of a protein to a specific location at the spindle pole body.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein localization to spindle pole body","termid":"GO:0071988"},{"relation_name":"is_a","term_name":"establishment of protein localization to organelle","termid":"GO:0072594"}],"gene_count":11,"genes_by_uniquename":{"SJAG_00918":null,"SJAG_01211":null,"SJAG_01224":null,"SJAG_01371":null,"SJAG_01546":null,"SJAG_01775":null,"SJAG_02731":null,"SJAG_03437":null,"SJAG_05220":null,"SJAG_05266":null,"SJAG_05319":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0051179"}],"interesting_parent_ids":["GO:0051179","GO:0008150"],"is_obsolete":false,"name":"establishment of protein localization to spindle pole body","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"establishment of protein localisation to spindle pole body","type":"exact"}],"termid":"GO:0071989","terms_by_termid":{"GO:1990976":null}}


id: PBO:0082995
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Cytosolic leucyl tRNA synthetase; ligates leucine to the appropriate tRNA; human homolog LARS can complement yeast temperature-sensitive mutant at restrictive temperature","termid":"PBO:0082995"}


id: PBO:0058648
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 6777","termid":"PBO:0058648"}


id: PBO:0084106
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Haploid-specific gene repressed by a1-alpha2; turned off in sir3 null strains, absence enhances the sensitivity of rad52-327 cells to campothecin almost 100-fold","termid":"PBO:0084106"}


id: FYPO:0007674
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which the observed rate of invertase activity (beta-fructofuranosidase activity) is increased.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased catalytic activity","termid":"FYPO:0000662"},{"relation_name":"is_a","term_name":"abnormal invertase activity","termid":"FYPO:0005741"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000707"},{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0000661"},{"rel_name":"is_a","termid":"FYPO:0000654"}],"interesting_parent_ids":["FYPO:0000707","FYPO:0001985","FYPO:0000652","FYPO:0000654","FYPO:0000661"],"is_obsolete":false,"name":"increased invertase activity","synonyms":[{"name":"increased beta-fructofuranosidase activity","type":"exact"}],"termid":"FYPO:0007674"}


id: GO:0101026
data:
  {"annotated_genes":["SJAG_04319","SJAG_04509","SJAG_03219","SJAG_03313","SJAG_04883","SJAG_04972"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[83683,88678,93234,93897,105220,105612],"is_not":false,"summary":null,"term":"GO:0101026"}]},"cv_name":"biological_process","definition":"A process in which the nuclear inner or outer membrane is synthesized, aggregates, and bonds together during mitotic nuclear division.","definition_xrefs":["PMID:26869222","GOC:vw"],"direct_ancestors":[{"relation_name":"is_a","term_name":"membrane organization","termid":"GO:0061024"},{"relation_name":"is_a","term_name":"nuclear membrane biogenesis","termid":"GO:0101025"},{"relation_name":"is_a","term_name":"mitotic cell cycle process","termid":"GO:1903047"},{"relation_name":"part_of","term_name":"mitotic nuclear division","termid":"GO:0140014"}],"gene_count":6,"genes_by_uniquename":{"SJAG_03219":null,"SJAG_03313":null,"SJAG_04319":null,"SJAG_04509":null,"SJAG_04883":null,"SJAG_04972":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0007049"},{"rel_name":"is_a","termid":"GO:0061024"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0061024"},{"rel_name":"is_a","termid":"GO:0044085"}],"interesting_parent_ids":["GO:0061024","GO:0007049","GO:0044085","GO:0008150"],"is_obsolete":false,"name":"mitotic nuclear membrane biogenesis","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"nuclear membrane biogenesis involved in mitotic nuclear division","type":"exact"}],"termid":"GO:0101026","terms_by_termid":{"GO:0101026":null}}


id: PBO:0030056
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_adenylyl_cyclase_activity","termid":"PBO:0030056"}


id: GO:1902320
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any DNA duplex unwinding that is involved in nuclear cell cycle DNA replication.","definition_xrefs":["GOC:mtg_cell_cycle","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell cycle DNA replication DNA unwinding","termid":"GO:1902297"},{"relation_name":"part_of","term_name":"nuclear DNA replication","termid":"GO:0033260"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0007049"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0006259"},{"rel_name":"part_of","termid":"GO:0006260"}],"interesting_parent_ids":["GO:0008150","GO:0007049","GO:0006259","GO:0006260"],"is_obsolete":false,"name":"nuclear DNA replication DNA duplex unwinding","synonyms":[{"name":"DNA duplex unwinding involved in DNA replication during S phase","type":"related"},{"name":"DNA duplex unwinding involved in DNA replication involved in S phase","type":"exact"},{"name":"DNA duplex unwinding involved in DNA replication involved in S-phase","type":"exact"},{"name":"DNA duplex unwinding involved in nuclear cell cycle DNA replication","type":"exact"},{"name":"DNA unwinding involved in DNA replication during S phase","type":"related"},{"name":"DNA unwinding involved in DNA replication involved in S phase","type":"exact"},{"name":"DNA unwinding involved in DNA replication involved in S-phase","type":"exact"},{"name":"DNA unwinding involved in nuclear cell cycle DNA replication","type":"exact"},{"name":"duplex DNA melting involved in DNA replication during S phase","type":"related"},{"name":"duplex DNA melting involved in DNA replication involved in S phase","type":"exact"},{"name":"duplex DNA melting involved in DNA replication involved in S-phase","type":"exact"}],"termid":"GO:1902320"}


id: PBO:0076732
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"t-complex 1 pseudogene 1","termid":"PBO:0076732"}


id: PBO:0069428
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 693, pseudogene","termid":"PBO:0069428"}


id: GO:0007590
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The chemical reactions and pathways involving the fat body. A fat body is a fat-containing cellular structure which serves as an energy reserve. As in, but not restricted to, the true insects (Insecta, ncbi_taxonomy_id:50557).","definition_xrefs":["GOC:go_curators","ISBN:0198506732"],"gene_count":0,"genotype_count":0,"name":"obsolete fat body metabolic process (sensu Insecta) (obsolete GO:0007590)","synonyms":[{"name":"fat body metabolic process (sensu Insecta)","type":"exact"}],"termid":"GO:0007590"}


id: GO:0033357
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of L-arabinose, arabino-pentose.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"arabinose biosynthetic process","termid":"GO:0019567"},{"relation_name":"is_a","term_name":"L-arabinose metabolic process","termid":"GO:0046373"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0005975"}],"interesting_parent_ids":["GO:0044281","GO:0005975","GO:0008150"],"is_obsolete":false,"name":"L-arabinose biosynthetic process","synonyms":[{"name":"L-arabinose anabolism","type":"exact"},{"name":"L-arabinose biosynthesis","type":"exact"},{"name":"L-arabinose formation","type":"exact"},{"name":"L-arabinose synthesis","type":"exact"}],"termid":"GO:0033357"}


id: GO:0003111
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which the secretion of epinephrine into the bloodstream increases the rate of heart muscle contraction.","definition_xrefs":["GOC:mtg_cardio"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of heart rate by epinephrine","termid":"GO:0003065"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of heart rate by circulating epinephrine","synonyms":[{"name":"positive regulation of heart rate by circulating adrenaline","type":"exact"}],"termid":"GO:0003111"}


id: GO:1904525
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of DNA amplification.","definition_xrefs":["GOC:TermGenie","GO_REF:0000058","PMID:26195783"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of DNA amplification","termid":"GO:1904523"},{"relation_name":"is_a","term_name":"positive regulation of DNA biosynthetic process","termid":"GO:2000573"},{"relation_name":"positively_regulates","term_name":"DNA amplification","termid":"GO:0006277"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"positively_regulates","termid":"GO:0006259"},{"rel_name":"regulates","termid":"GO:0006259"}],"interesting_parent_ids":["GO:0008150","GO:0006259"],"is_obsolete":false,"name":"positive regulation of DNA amplification","synonyms":[{"name":"activation of DNA amplification","type":"narrow"},{"name":"up regulation of DNA amplification","type":"exact"},{"name":"up-regulation of DNA amplification","type":"exact"},{"name":"upregulation of DNA amplification","type":"exact"}],"termid":"GO:1904525"}


id: PBO:0029782
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_septum_during_vegetative_growth","termid":"PBO:0029782"}


id: GO:0000019
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of DNA recombination during mitosis.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of DNA recombination","termid":"GO:0000018"},{"relation_name":"regulates","term_name":"mitotic recombination","termid":"GO:0006312"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0006259"},{"rel_name":"regulates","termid":"GO:0006310"}],"interesting_parent_ids":["GO:0006310","GO:0006259","GO:0008150"],"is_obsolete":false,"name":"regulation of mitotic recombination","synonyms":[{"name":"regulation of recombination within rDNA repeats","type":"narrow"}],"termid":"GO:0000019"}


id: GO:0018716
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 1-phenanthrol + glucose = 1-phenanthryl-beta-D-glucopyranoside + H2O.","definition_xrefs":["UM-BBD_reactionID:r0525"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phenanthrol glycosyltransferase activity","termid":"GO:0019112"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016757"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016740"}],"interesting_parent_ids":["GO:0003824","GO:0016757","GO:0003674","GO:0016740"],"is_obsolete":false,"name":"1-phenanthrol glycosyltransferase activity","termid":"GO:0018716"}


id: PBO:0000629
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ferrichrome synthetase Sib1","termid":"PBO:0000629"}


id: GO:0075111
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process in which a virus interferes with, inhibits or disrupts a receptor-mediated signal transduction pathway in its host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction.","definition_xrefs":["GOC:pamgo_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"symbiont-mediated perturbation of host receptor-mediated signal transduction","termid":"GO:0075109"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"symbiont-mediated suppression of host receptor-mediated signal transduction","synonyms":[{"name":"disruption of host receptor-mediated signal transduction","type":"exact"},{"name":"negative regulation by symbiont of host receptor-mediated signal transduction","type":"exact"},{"name":"suppression by symbiont of host receptor-mediated signal transduction","type":"exact"}],"termid":"GO:0075111"}


id: GO:0034902
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: endosulfan sulfate + H2O = endosulfan diol + sulfite.","definition_xrefs":["UM-BBD_reactionID:r1387"],"direct_ancestors":[{"relation_name":"is_a","term_name":"sulfuric ester hydrolase activity","termid":"GO:0008484"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016788"},{"rel_name":"is_a","termid":"GO:0016787"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016787","GO:0016788"],"is_obsolete":false,"name":"endosulfan sulfate hydrolase activity","termid":"GO:0034902"}


id: PBO:0041473
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chromosome 11 open reading frame 52","termid":"PBO:0041473"}


id: PBO:0075906
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 6","termid":"PBO:0075906"}


id: GO:0005848
data:
  {"annotated_genes":["SJAG_02037","SJAG_01412","SJAG_03594","SJAG_04022","SJAG_03853","SJAG_01791"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[89091,93678,94620,95122,105122,106831],"is_not":false,"summary":null,"term":"GO:0005848"}]},"cv_name":"cellular_component","definition":"A protein complex required for mRNA cleavage but not for poly(A) addition.","definition_xrefs":["PMID:10357856","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mRNA cleavage factor complex","termid":"GO:0005849"}],"gene_count":6,"genes_by_uniquename":{"SJAG_01412":null,"SJAG_01791":null,"SJAG_02037":null,"SJAG_03594":null,"SJAG_03853":null,"SJAG_04022":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005634"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0005634","GO:0032991","GO:0005575"],"is_obsolete":false,"name":"mRNA cleavage stimulating factor complex","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"CstF complex","type":"narrow"},{"name":"cleavage stimulation factor activity","type":"related"}],"termid":"GO:0005848","terms_by_termid":{"GO:0005848":null}}


id: GO:0061987
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process involving glucose that decreases the frequency, rate or extent or transcription from an RNA polymerase II promoter.","definition_xrefs":["PMID:11875061"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of transcription from RNA polymerase II promoter by glucose","termid":"GO:0000430"},{"relation_name":"is_a","term_name":"negative regulation of transcription by glucose","termid":"GO:0061986"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0006351"},{"rel_name":"is_a","termid":"GO:0006355"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0010467","GO:0008150","GO:0006355","GO:0006351"],"is_obsolete":false,"name":"negative regulation of transcription from RNA polymerase II promoter by glucose","termid":"GO:0061987"}


id: PBO:0074245
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"solute carrier family 66 member 1 like","termid":"PBO:0074245"}


id: GO:2000427
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of apoptotic cell clearance.","definition_xrefs":["GOC:obol"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of phagocytosis","termid":"GO:0050766"},{"relation_name":"is_a","term_name":"regulation of apoptotic cell clearance","termid":"GO:2000425"},{"relation_name":"positively_regulates","term_name":"apoptotic cell clearance","termid":"GO:0043277"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"positively_regulates","termid":"GO:0016192"},{"rel_name":"positively_regulates","termid":"GO:0006810"},{"rel_name":"regulates","termid":"GO:0016192"},{"rel_name":"regulates","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0016192","GO:0008150","GO:0006810"],"is_obsolete":false,"name":"positive regulation of apoptotic cell clearance","synonyms":[{"name":"positive regulation of apoptotic cell removal","type":"exact"},{"name":"positive regulation of efferocytosis","type":"exact"},{"name":"positive regulation of programmed cell clearance","type":"exact"}],"termid":"GO:2000427"}


id: GO:0060115
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which a cell becomes committed to become a vestibular receptor cell.","definition_xrefs":["GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"inner ear receptor cell fate commitment","termid":"GO:0060120"},{"relation_name":"part_of","term_name":"vestibular receptor cell differentiation","termid":"GO:0060114"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"vestibular receptor cell fate commitment","synonyms":[{"name":"vestibular hair cell fate commitment","type":"exact"}],"termid":"GO:0060115"}


id: GO:0070755
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate, or extent of interleukin-35 production.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of cytokine production","termid":"GO:0001818"},{"relation_name":"is_a","term_name":"regulation of interleukin-35 production","termid":"GO:0070754"},{"relation_name":"negatively_regulates","term_name":"interleukin-35 production","termid":"GO:0070753"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"negatively_regulates","termid":"GO:0010467"},{"rel_name":"regulates","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0008150","GO:0010467"],"is_obsolete":false,"name":"negative regulation of interleukin-35 production","secondary_identifiers":["GO:0070751"],"synonyms":[{"name":"down regulation of interleukin-35 production","type":"exact"},{"name":"down-regulation of interleukin-35 production","type":"exact"},{"name":"downregulation of interleukin-35 production","type":"exact"},{"name":"inhibition of interleukin-35 production","type":"narrow"},{"name":"negative regulation of IL-35 production","type":"exact"},{"name":"negative regulation of interleukin-35 biosynthetic process","type":"narrow"}],"termid":"GO:0070755"}


id: PBO:0110061
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nifs homolog, possible cysteine desulfurase, implicated in iron-sulfur cluster assembly","termid":"PBO:0110061"}


id: PBO:0003970
data:
  {"annotation_feature_type":"gene","cv_name":"disease_associated","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mental retardation","termid":"PBO:0003970"}


id: PBO:0038454
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"aminoadipate-semialdehyde synthase","termid":"PBO:0038454"}


id: PBO:0016077
data:
  {"annotation_feature_type":"gene","cv_name":"name_description","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Dhp1 INteracting protein","termid":"PBO:0016077"}


id: GO:0046468
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving phosphatidyl-N-monomethylethanolamine (PMME), a derivative of phosphatidylethanolamine with a methylated amine group. Present in trace levels in plants and slightly higher in bacteria.","direct_ancestors":[{"relation_name":"is_a","term_name":"phosphatidylethanolamine metabolic process","termid":"GO:0046337"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006629"}],"interesting_parent_ids":["GO:0008150","GO:0006629"],"is_obsolete":false,"name":"phosphatidyl-N-monomethylethanolamine metabolic process","synonyms":[{"name":"PMME metabolic process","type":"exact"},{"name":"PMME metabolism","type":"exact"},{"name":"phosphatidyl-N-monomethylethanolamine metabolism","type":"exact"}],"termid":"GO:0046468"}


id: PBO:0031522
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_DNA-7-methylguanine_glycosylase_activity","termid":"PBO:0031522"}


id: PR:O74537
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPCC74.04 gene.","definition_xrefs":["PRO:DNx","UniProtKB:O74537"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized amino-acid permease C74.04 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC74.04","synonyms":[{"name":"Spom972h-SPCC74.04","type":"exact"}],"termid":"PR:O74537"}


id: GO:1901477
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The directed movement of benomyl across a membrane.","definition_xrefs":["GOC:TermGenie"],"gene_count":0,"genotype_count":0,"name":"obsolete benomyl transmembrane transport (obsolete GO:1901477)","synonyms":[{"name":"benomyl membrane transport","type":"exact"}],"termid":"GO:1901477"}


id: GO:0018451
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: ethene oxide + NAD+ + CoA-SH = NADH + H+ + acetyl-CoA.","definition_xrefs":["UM-BBD_reactionID:r0595"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor","termid":"GO:0016616"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016491","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"epoxide dehydrogenase activity","termid":"GO:0018451"}


id: PBO:0077485
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transmembrane protein 204","termid":"PBO:0077485"}


id: PBO:0042455
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CDC42 small effector 1","termid":"PBO:0042455"}


id: PBO:0061719
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NUT family member 2D","termid":"PBO:0061719"}


id: GO:0034955
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 2,3-dihydroxydiphenyl ether + O2 + H2O = 2-hydroxymuconate + phenol.","definition_xrefs":["UM-BBD_reactionID:r1451"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen","termid":"GO:0016702"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0003674","GO:0016491","GO:0003824"],"is_obsolete":false,"name":"2,3-dihydroxydiphenyl ether dioxygenase activity","secondary_identifiers":["EC:1.13.11.-"],"termid":"GO:0034955"}


id: PBO:0073551
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SHANK2 antisense RNA 3","termid":"PBO:0073551"}


id: SO:0001398
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A post translationally modified histidine amino acid feature.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"modified_amino_acid_feature","termid":"SO:0001385"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"modified_L_histidine","secondary_identifiers":["MOD:00909"],"synonyms":[{"name":"ModHis","type":"exact"},{"name":"modified L histidine","type":"exact"},{"name":"modified L-histidine","type":"exact"}],"termid":"SO:0001398"}


id: PBO:0049072
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"G protein-coupled receptor 89A","termid":"PBO:0049072"}


id: GO:0005582
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A collagen homotrimer of alpha1(XV) chains; a chondroitin sulfate proteoglycan often found in specialized basement membranes where it bridges between fibrils.","definition_xrefs":["PMID:21421911","PMID:11158616","PMID:11937714"],"direct_ancestors":[{"relation_name":"is_a","term_name":"basement membrane collagen trimer","termid":"GO:0098651"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0005575","GO:0032991"],"is_obsolete":false,"name":"collagen type XV trimer","termid":"GO:0005582"}


id: PBO:0005577
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"60S ribosomal protein L39","termid":"PBO:0005577"}


id: PBO:0039757
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"atherosclerotic plaque pathogenesis associated transcript","termid":"PBO:0039757"}


id: PBO:0086962
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Regulator of the Fps1p glycerol channel; under nonstress conditions, binds to Fps1p to positively regulate glycerol transport; under osmotic stress, multiple phosphorylation by Hog1p causes Ask10p to dissociate from Fps1p; forms homodimers and heterodimerizes with paralog Rgc1p; phosphorylated in response to oxidative stress; has a role in destruction of Ssn8p; associates with RNA polymerase II holoenzyme","termid":"PBO:0086962"}


id: PBO:0059217
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MARCKS cis regulating lncRNA promoter of cytokines and inflammation","termid":"PBO:0059217"}


id: GO:0004359
data:
  {"annotated_genes":["SJAG_02618","SJAG_00392","SJAG_03775","SJAG_00964","SJAG_00691"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[76471,77319,89051,105703,106349],"is_not":false,"summary":null,"term":"GO:0004359"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: L-glutamine + H2O = L-glutamate + NH3.","definition_xrefs":["EC:3.5.1.2"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides","termid":"GO:0016811"}],"gene_count":5,"genes_by_uniquename":{"SJAG_00392":null,"SJAG_00691":null,"SJAG_00964":null,"SJAG_02618":null,"SJAG_03775":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016810"},{"rel_name":"is_a","termid":"GO:0016787"}],"interesting_parent_ids":["GO:0016810","GO:0003824","GO:0016787","GO:0003674"],"is_obsolete":false,"name":"glutaminase activity","references_by_uniquename":{"GO_REF:0000107":null,"PMID:21873635":null},"secondary_identifiers":["RHEA:15889","MetaCyc:GLUTAMIN-RXN","Reactome:R-HSA-70609"],"synonyms":[{"name":"L-glutaminase activity","type":"related"},{"name":"L-glutamine amidohydrolase activity","type":"related"},{"name":"glutaminase I","type":"related"},{"name":"glutamine aminohydrolase activity","type":"related"}],"termid":"GO:0004359","terms_by_termid":{"GO:0004359":null}}


id: PBO:0082311
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Aspartyl-tRNA synthetase, primarily cytoplasmic; homodimeric enzyme that catalyzes the specific aspartylation of tRNA(Asp); class II aminoacyl tRNA synthetase; binding to its own mRNA may confer autoregulation; shares five highly conserved amino acids with human that when mutated cause leukoencephalopathy characterized by hypomyelination with brain stem and spinal cord involvement and leg spasticity (HBSL)","termid":"PBO:0082311"}


id: PBO:0050746
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"heat shock protein family E (Hsp10) member 1 pseudogene 8","termid":"PBO:0050746"}


id: GO:1905629
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of serotonin biosynthetic process.","definition_xrefs":["PMID:25642596","GOC:PARL","GOC:pad","GOC:TermGenie","GO_REF:0000058"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of cellular biosynthetic process","termid":"GO:0031328"},{"relation_name":"is_a","term_name":"positive regulation of nitrogen compound metabolic process","termid":"GO:0051173"},{"relation_name":"is_a","term_name":"regulation of serotonin biosynthetic process","termid":"GO:1905627"},{"relation_name":"positively_regulates","term_name":"serotonin biosynthetic process","termid":"GO:0042427"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of serotonin biosynthetic process","synonyms":[{"name":"activation of serotonin anabolism","type":"narrow"},{"name":"activation of serotonin biosynthesis","type":"narrow"},{"name":"activation of serotonin biosynthetic process","type":"narrow"},{"name":"activation of serotonin formation","type":"narrow"},{"name":"activation of serotonin synthesis","type":"narrow"},{"name":"positive regulation of serotonin anabolism","type":"exact"},{"name":"positive regulation of serotonin biosynthesis","type":"exact"},{"name":"positive regulation of serotonin formation","type":"exact"},{"name":"positive regulation of serotonin synthesis","type":"exact"},{"name":"up regulation of serotonin anabolism","type":"exact"},{"name":"up regulation of serotonin biosynthesis","type":"exact"},{"name":"up regulation of serotonin biosynthetic process","type":"exact"},{"name":"up regulation of serotonin formation","type":"exact"},{"name":"up regulation of serotonin synthesis","type":"exact"},{"name":"up-regulation of serotonin anabolism","type":"exact"},{"name":"up-regulation of serotonin biosynthesis","type":"exact"},{"name":"up-regulation of serotonin biosynthetic process","type":"exact"},{"name":"up-regulation of serotonin formation","type":"exact"},{"name":"up-regulation of serotonin synthesis","type":"exact"},{"name":"upregulation of serotonin anabolism","type":"exact"},{"name":"upregulation of serotonin biosynthesis","type":"exact"},{"name":"upregulation of serotonin biosynthetic process","type":"exact"},{"name":"upregulation of serotonin formation","type":"exact"},{"name":"upregulation of serotonin synthesis","type":"exact"}],"termid":"GO:1905629"}


id: GO:1902333
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any DNA ligation that is involved in nuclear cell cycle DNA replication.","definition_xrefs":["GOC:mtg_cell_cycle","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell cycle DNA replication DNA ligation","termid":"GO:1902291"},{"relation_name":"part_of","term_name":"nuclear DNA replication","termid":"GO:0033260"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0006260"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006259"},{"rel_name":"part_of","termid":"GO:0007049"},{"rel_name":"part_of","termid":"GO:0006259"}],"interesting_parent_ids":["GO:0008150","GO:0007049","GO:0006260","GO:0006259"],"is_obsolete":false,"name":"nuclear DNA replication DNA ligation","synonyms":[{"name":"DNA ligation involved in DNA replication during S phase","type":"related"},{"name":"DNA ligation involved in DNA replication involved in S phase","type":"exact"},{"name":"DNA ligation involved in DNA replication involved in S-phase","type":"exact"},{"name":"DNA ligation involved in nuclear cell cycle DNA replication","type":"exact"}],"termid":"GO:1902333"}


id: GO:0071641
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate, or extent of production of macrophage inflammatory protein 1 alpha.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of chemokine production","termid":"GO:0032682"},{"relation_name":"is_a","term_name":"regulation of macrophage inflammatory protein 1 alpha production","termid":"GO:0071640"},{"relation_name":"negatively_regulates","term_name":"macrophage inflammatory protein-1 alpha production","termid":"GO:0071608"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"negatively_regulates","termid":"GO:0010467"},{"rel_name":"regulates","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0008150","GO:0010467"],"is_obsolete":false,"name":"negative regulation of macrophage inflammatory protein 1 alpha production","synonyms":[{"name":"negative regulation of CCL3 production","type":"exact"},{"name":"negative regulation of MIP-1a production","type":"exact"},{"name":"negative regulation of chemokine (C-C motif) ligand 3 production","type":"exact"},{"name":"negative regulation of macrophage inflammatory protein production","type":"broad"}],"termid":"GO:0071641"}


id: GO:1905766
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of protection from non-homologous end joining at telomere.","definition_xrefs":["GOC:TermGenie","GO_REF:0000058","GOC:BHF","PMID:14690602","GOC:nc","GOC:BHF_telomere"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of telomere maintenance in response to DNA damage","termid":"GO:1904507"},{"relation_name":"is_a","term_name":"regulation of protection from non-homologous end joining at telomere","termid":"GO:1905764"},{"relation_name":"positively_regulates","term_name":"protection from non-homologous end joining at telomere","termid":"GO:0031848"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0032200"},{"rel_name":"positively_regulates","termid":"GO:0006259"},{"rel_name":"positively_regulates","termid":"GO:0032200"},{"rel_name":"regulates","termid":"GO:0006259"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0006259","GO:0032200"],"is_obsolete":false,"name":"positive regulation of protection from non-homologous end joining at telomere","synonyms":[{"name":"activation of protection from NHEJ-mediated telomere fusion","type":"narrow"},{"name":"activation of protection from non-homologous end joining at telomere","type":"narrow"},{"name":"positive regulation of protection from NHEJ-mediated telomere fusion","type":"exact"},{"name":"up regulation of protection from NHEJ-mediated telomere fusion","type":"exact"},{"name":"up regulation of protection from non-homologous end joining at telomere","type":"exact"},{"name":"up-regulation of protection from NHEJ-mediated telomere fusion","type":"exact"},{"name":"up-regulation of protection from non-homologous end joining at telomere","type":"exact"},{"name":"upregulation of protection from NHEJ-mediated telomere fusion","type":"exact"},{"name":"upregulation of protection from non-homologous end joining at telomere","type":"exact"}],"termid":"GO:1905766"}


id: SO:0001265
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A small noncoding RNA of approximately 22 nucleotides in length which may be involved in regulation of gene expression.","direct_ancestors":[{"relation_name":"has_quality","term_name":"miRNA_encoding","termid":"SO:0000571"},{"relation_name":"has_quality","term_name":"stRNA_encoding","termid":"SO:0000656"},{"relation_name":"is_a","term_name":"sncRNA_gene","termid":"SO:0002342"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"miRNA_gene","secondary_identifiers":["SO:0001270"],"synonyms":[{"name":"miRNA gene","type":"exact"},{"name":"stRNA gene","type":"exact"},{"name":"stRNA_gene","type":"exact"}],"termid":"SO:0001265"}


id: _global:realized_by
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"realized_by","termid":"_global:realized_by"}


id: GO:0022850
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Enables the transmembrane transfer of a cation by a channel that opens when serotonin has been bound by the channel complex or one of its constituent parts.","definition_xrefs":["GOC:mtg_transport","PMID:12867984"],"direct_ancestors":[{"relation_name":"is_a","term_name":"transmitter-gated monoatomic ion channel activity","termid":"GO:0022824"},{"relation_name":"is_a","term_name":"ligand-gated monoatomic cation channel activity","termid":"GO:0099094"},{"relation_name":"is_a","term_name":"serotonin receptor activity","termid":"GO:0099589"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0038023"},{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005215"}],"interesting_parent_ids":["GO:0005215","GO:0003674","GO:0038023","GO:0022857"],"is_obsolete":false,"name":"serotonin-gated monoatomic cation channel activity","secondary_identifiers":["Reactome:R-HSA-9648983","GO:0005232","Reactome:R-HSA-975311"],"synonyms":[{"name":"5-hydroxytryptamine-gated receptor-channel","type":"narrow"},{"name":"serotonin-activated cation-selective channel activity","type":"exact"},{"name":"serotonin-gated cation channel activity","type":"narrow"},{"name":"serotonin-gated cation-selective channel activity","type":"broad"},{"name":"serotonin-gated monoatomic cation-selective channel activity","type":"exact"}],"termid":"GO:0022850"}


id: PBO:0047108
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"family with sequence similarity 157 member A","termid":"PBO:0047108"}


id: FYECO:0000004
data:
  {"alleles_by_uniquename":{"SJAG_00266:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_00266","name":"atf1delta","uniquename":"SJAG_00266:allele-1"},"SJAG_00426:allele-1":{"allele_type":"amino_acid_mutation","description":"P363S","gene_uniquename":"SJAG_00426","name":"bbl1-P363S","uniquename":"SJAG_00426:allele-1"},"SJAG_00871:allele-1":{"allele_type":"amino_acid_mutation","description":"cut3-T19E","gene_uniquename":"SJAG_00871","name":"cut3-T19E","uniquename":"SJAG_00871:allele-1"},"SJAG_01946:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_01946","name":"cem1delta","uniquename":"SJAG_01946:allele-1"},"SJAG_01956:allele-1":{"allele_type":"amino_acid_mutation","description":"E405K 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aa)","display_uniquename":"cdc15-A-L264P,P442T-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03596:allele-1","expression":"Not assayed or wild type"}]}]},"cdc2-1w-G146D-amino_acid_mutation-expression-not_assayed_or_wild_type":{"display_name":"cdc2-1w(G146D aa)","display_uniquename":"cdc2-1w-G146D-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03048:allele-1","expression":"Not assayed or wild type"}]}]},"cdc25-D9-I30T,T572P-amino_acid_mutation-expression-not_assayed_or_wild_type":{"display_name":"cdc25-D9(I30T,T572P aa)","display_uniquename":"cdc25-D9-I30T,T572P-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04332:allele-1","expression":"Not assayed or wild type"}]}]},"cmp7delta__vps4-ts-I307T_L327S-amino_acid_mutation-expression-not_assayed_or_wild_type":{"display_name":"cmp7delta vps4-ts(I307T L327S aa)","display_uniquename":"cmp7delta__vps4-ts-I307T_L327S-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_05207:allele-1","expression":"Null"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_03892:allele-3","expression":"Not assayed or wild type"}]}]},"cut23-415-A186T_ts-amino_acid_mutation-expression-not_assayed_or_wild_type":{"display_name":"cut23-415(A186T ts)","display_uniquename":"cut23-415-A186T_ts-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03351:allele-1","expression":"Not assayed or wild type"}]}]},"cut3-T19E-cut3-T19E-amino_acid_mutation-expression-not_assayed_or_wild_type__pim1-R152C-R152C-amino_acid_mutation-expression-not_assayed_or_wild_type":{"display_name":"cut3-T19E(aa) pim1-R152C(aa)","display_uniquename":"cut3-T19E-cut3-T19E-amino_acid_mutation-expression-not_assayed_or_wild_type__pim1-R152C-R152C-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_00871:allele-1","expression":"Not assayed or wild type"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_04464:allele-1","expression":"Not assayed or wild type"}]}]},"gms1delta":{"display_name":"gms1delta","display_uniquename":"gms1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04697:allele-1","expression":"Null"}]}]},"nuc2-1051-E405K_ts-amino_acid_mutation-expression-not_assayed_or_wild_type":{"display_name":"nuc2-1051(E405K ts)","display_uniquename":"nuc2-1051-E405K_ts-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01956:allele-1","expression":"Not assayed or wild type"}]}]},"pim1-R152C-R152C-amino_acid_mutation-expression-not_assayed_or_wild_type":{"display_name":"pim1-R152C(aa)","display_uniquename":"pim1-R152C-R152C-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04464:allele-1","expression":"Not assayed or wild type"}]}]},"pka1delta":{"display_name":"pka1delta","display_uniquename":"pka1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04312:allele-1","expression":"Null"}]}]},"sty1delta":{"display_name":"sty1delta","display_uniquename":"sty1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_02592:allele-1","expression":"Null"}]}]},"vps4-ts-I307T_L327S-amino_acid_mutation-expression-not_assayed_or_wild_type":{"display_name":"vps4-ts(I307T L327S aa)","display_uniquename":"vps4-ts-I307T_L327S-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03892:allele-3","expression":"Not assayed or wild type"}]}]}},"is_obsolete":false,"multi_locus_annotated_genes":["SJAG_01946","SJAG_03892","SJAG_04464","SJAG_03575","SJAG_05207","SJAG_03198","SJAG_00871"],"name":"high temperature","references_by_uniquename":{"PMID:23786411":null,"PMID:25318672":null,"PMID:25866389":null,"PMID:27678009":null,"PMID:28954740":null,"PMID:30664646":null,"PMID:31150379":null,"PMID:32109380":null,"PMID:36058798":null},"single_locus_annotated_genes":["SJAG_04312","SJAG_03048","SJAG_03351","SJAG_00266","SJAG_03596","SJAG_00426","SJAG_01956","SJAG_03892","SJAG_04464","SJAG_02592","SJAG_03575","SJAG_04332","SJAG_04697"],"single_locus_genotype_uniquenames":["pka1delta","bbl1-P363S-P363S-amino_acid_mutation-expression-not_assayed_or_wild_type","gms1delta","cdc15-A-L264P,P442T-amino_acid_mutation-expression-not_assayed_or_wild_type","nuc2-1051-E405K_ts-amino_acid_mutation-expression-not_assayed_or_wild_type","cdc25-D9-I30T,T572P-amino_acid_mutation-expression-not_assayed_or_wild_type","cdc2-1w-G146D-amino_acid_mutation-expression-not_assayed_or_wild_type","atf1delta","vps4-ts-I307T_L327S-amino_acid_mutation-expression-not_assayed_or_wild_type","apc2-361-E548K_ts-amino_acid_mutation-expression-not_assayed_or_wild_type","sty1delta","cut23-415-A186T_ts-amino_acid_mutation-expression-not_assayed_or_wild_type","pim1-R152C-R152C-amino_acid_mutation-expression-not_assayed_or_wild_type"],"synonyms":[{"name":"33 degrees Celsius","type":"narrow"},{"name":"34 degrees Celsius","type":"narrow"},{"name":"35 degrees Celsius","type":"narrow"},{"name":"36 degrees Celsius","type":"narrow"},{"name":"37 degrees Celsius","type":"narrow"},{"name":"38 degrees Celsius","type":"narrow"},{"name":"39 degrees Celsius","type":"narrow"},{"name":"40 degrees Celsius","type":"narrow"},{"name":"41 degrees Celsius","type":"related"},{"name":"42 degrees Celsius","type":"related"},{"name":"43 degrees Celsius","type":"related"}],"termid":"FYECO:0000004","terms_by_termid":{"FYECO:0000004":null,"FYECO:0000005":null,"FYECO:0000006":null,"FYECO:0000137":null,"FYECO:0000162":null,"FYPO_EXT:0000001":null,"FYPO_EXT:0000002":null}}


id: GO:1902703
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The chemical reactions and pathways resulting in the breakdown of hexose to butan-1-ol.","definition_xrefs":["GOC:mengo_curators","PMID:18727018","GO_REF:0000093","PMID:19539744","GOC:TermGenie"],"gene_count":0,"genotype_count":0,"name":"obsolete hexose catabolic process to butan-1-ol (obsolete GO:1902703)","synonyms":[{"name":"hexose breakdown to butan-1-ol","type":"exact"},{"name":"hexose catabolic process to 1-butanol","type":"exact"},{"name":"hexose catabolic process to butanol","type":"exact"},{"name":"hexose catabolism to butan-1-ol","type":"exact"},{"name":"hexose degradation to butan-1-ol","type":"exact"},{"name":"solventogenesis","type":"broad"}],"termid":"GO:1902703"}


id: PBO:0045918
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"EF-hand calcium binding domain 13","termid":"PBO:0045918"}


id: PR:000027564
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A histone H2A-alpha phosphorylated 1 in Schizosaccharomyces pombe. Phosphorylation motif is SQE. Example: UniProtKB:P04909-1, Ser-129, MOD:00046.","definition_xrefs":["PMID:21516229","PomBase:MAH","PMID:15226425"],"direct_ancestors":[{"relation_name":"is_a","term_name":"histone H2A-alpha (Schizosaccharomyces pombe 972h-)","termid":"PR:P04909"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"hta1/Phos:(S128)","pombase_gene_id":"SPCC622.08c","synonyms":[{"name":"Spom-hta1/Phos:1","type":"exact"},{"name":"gamma-H2A (Schizosaccharomyces pombe)","type":"related"},{"name":"histone H2A.1 phosphorylated 1 (Schizosaccharomyces pombe)","type":"exact"},{"name":"hta1/Phos:(S128)","type":"exact"},{"name":"hta1/Phos:(S129)","type":"exact"}],"termid":"PR:000027564"}


id: PBO:0066757
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RN7SK pseudogene 55","termid":"PBO:0066757"}


id: GO:2000683
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of cellular response to X-ray.","definition_xrefs":["GOC:obol"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of response to stimulus","termid":"GO:0048583"},{"relation_name":"is_a","term_name":"regulation of cellular process","termid":"GO:0050794"},{"relation_name":"regulates","term_name":"cellular response to X-ray","termid":"GO:0071481"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of cellular response to X-ray","synonyms":[{"name":"regulation of cellular response to X-ray radiation stimulus","type":"exact"}],"termid":"GO:2000683"}


id: PBO:0005591
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chitin synthase regulatory factor Chr2 (predicted)","termid":"PBO:0005591"}


id: PBO:0075734
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SRP14 pseudogene 2","termid":"PBO:0075734"}


id: GO:0070137
data:
  {"annotated_genes":["SJAG_16454","SJAG_02214"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[101519,74260],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0070139"}]},"cv_name":"molecular_function","definition":"Catalysis of the hydrolysis of peptide bonds between an alpha-carboxyl group and an alpha-amino group within a small protein such as ubiquitin or a ubiquitin-like protein (e.g. APG8, ISG15, NEDD8, SUMO).","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cysteine-type endopeptidase activity","termid":"GO:0004197"},{"relation_name":"is_a","term_name":"ubiquitin-like protein peptidase activity","termid":"GO:0019783"}],"gene_count":2,"genes_by_uniquename":{"SJAG_02214":null,"SJAG_16454":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008233"},{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0140096"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0008233","GO:0016787","GO:0140096","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"ubiquitin-like protein-specific endopeptidase activity","references_by_uniquename":{"GO_REF:0000107":null,"PMID:21873635":null},"synonyms":[{"name":"small conjugating protein-specific endopeptidase activity","type":"exact"}],"termid":"GO:0070137","terms_by_termid":{"GO:0070139":null}}


id: PR:Q9US51
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- mtf1 gene.","definition_xrefs":["UniProtKB:Q9US51","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial transcription factor 1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC1002.08c","synonyms":[{"name":"Spom972h-mtf1","type":"exact"}],"termid":"PR:Q9US51"}


id: PBO:0071218
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L23a pseudogene 59","termid":"PBO:0071218"}


id: FYPO:0001753
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell population phenotype in which a population of cells grow normally (i.e. indistinguishably from wild type) under anaerobic conditions.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal cell population growth","termid":"FYPO:0000047"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0002057"},{"rel_name":"is_a","termid":"FYPO:0000003"},{"rel_name":"is_a","termid":"FYPO:0002058"},{"rel_name":"is_a","termid":"FYPO:0000139"},{"rel_name":"is_a","termid":"FYPO:0000257"}],"interesting_parent_ids":["FYPO:0002057","FYPO:0000257","FYPO:0000139","FYPO:0000003","FYPO:0002058"],"is_obsolete":false,"name":"normal anaerobic cell population growth","synonyms":[{"name":"normal anaerobic growth","type":"broad"}],"termid":"FYPO:0001753"}


id: PBO:0029990
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_pre-mRNA_level","termid":"PBO:0029990"}


id: PBO:0066880
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RN7SK pseudogene 180","termid":"PBO:0066880"}


id: PBO:0086377
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Putative ATPase of the AAA family; interacts with the Sin1p transcriptional repressor in the two-hybrid system","termid":"PBO:0086377"}


id: PR:000050534
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A histone H4, hhf2 gene translation product (Schizosaccharomyces pombe) that has had the initiator methionine removed and that has been trimethylated at the position equivalent to Lys-21 of the amino acid sequence represented by UniProtKB:P09322. UniProtKB:P09322, 2-103, Lys-21, MOD:00083.","definition_xrefs":["PMID:22150589","PRO:DAN","PomBase:VW"],"direct_ancestors":[{"relation_name":"is_a","term_name":"histone H4, hhf2 gene translation product (Schizosaccharomyces pombe)","termid":"PR:000050527"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"hhf2/Me3:(K20)","pombase_gene_id":"SPBC8D2.03c","synonyms":[{"name":"PRO_0000158357, Lys-21, MOD:00083","type":"exact"},{"name":"Spom-hhf2/InitMet-/Me3:1","type":"exact"},{"name":"UniProtKB:P09322, 2-103, Lys-21, MOD:00083","type":"broad"},{"name":"hhf2/Me3:(K20)","type":"exact"},{"name":"histone H4 K20me3 (Schizosaccharomyces pombe)","type":"broad"},{"name":"histone H4 hhf2 K20me3 (Schizosaccharomyces pombe)","type":"exact"}],"termid":"PR:000050534"}


id: PBO:0051558
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"IL10RB divergent transcript","termid":"PBO:0051558"}


id: PBO:0018012
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"armadillo repeat protein, involved in nucleocytoplasmic transport Syo2 (predicted)","termid":"PBO:0018012"}


id: FYPO:0002019
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A physical cellular phenotype observed in the vegetative growth phase of the life cycle in which cells form telomeres that are longer than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal telomere length during vegetative growth","termid":"FYPO:0006464"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"output_of","termid":"FYPO:0000641"},{"rel_name":"output_of","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"output_of","termid":"FYPO:0000293"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0005447","FYPO:0001320","FYPO:0000293","FYPO:0000641","FYPO:0000002"],"is_obsolete":false,"name":"elongated telomeres during vegetative growth","synonyms":[{"name":"elongated telomeres during mitotic cell cycle","type":"related"},{"name":"increased telomere length during vegetative growth","type":"exact"},{"name":"long telomeres during vegetative growth","type":"exact"}],"termid":"FYPO:0002019"}


id: PR:Q09181
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"An ATP-dependent RNA helicase DDX6 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx","OMA:SCHPO03601"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ATP-dependent RNA helicase ste13 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC776.09","secondary_identifiers":["UniProtKB:Q09181"],"synonyms":[{"name":"Spom972h-DDX6","type":"exact"}],"termid":"PR:Q09181"}


id: GO:0140033
data:
  {"annotated_genes":["SJAG_02625","SJAG_00837","SJAG_00591","SJAG_05252"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[70907,76017,77750,74717],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0070577"}]},"cv_name":"molecular_function","definition":"Binding to a protein upon acetylation of the target protein.","definition_xrefs":["PMID:26060076"],"direct_ancestors":[{"relation_name":"is_a","term_name":"modification-dependent protein binding","termid":"GO:0140030"}],"gene_count":4,"genes_by_uniquename":{"SJAG_00591":null,"SJAG_00837":null,"SJAG_02625":null,"SJAG_05252":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0005515"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0005515","GO:0005488"],"is_obsolete":false,"name":"acetylation-dependent protein binding","references_by_uniquename":{"PMID:21873635":null},"termid":"GO:0140033","terms_by_termid":{"GO:0070577":null}}


id: GO:0060934
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The commitment of cells to His-Purkinje cell fates and their capacity to differentiate into His-Purkinje cells. These cells form the fibers that regulate cardiac muscle contraction in the ventricles.","definition_xrefs":["GOC:mtg_heart"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cardiac cell fate commitment","termid":"GO:0060911"},{"relation_name":"part_of","term_name":"His-Purkinje system cell differentiation","termid":"GO:0060932"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"His-Purkinje system cell fate commitment","termid":"GO:0060934"}


id: FYPO:0003716
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to Skb1-containing lateral cortical nodes is abolished, and the protein is present in the nucleus instead.","definition_xrefs":["PMID:25009287","PomBase:mah"],"direct_ancestors":[{"relation_name":"has_part","term_name":"protein mislocalized to nucleus during vegetative growth","termid":"FYPO:0000784"},{"relation_name":"is_a","term_name":"protein mislocalized to nucleus during vegetative growth","termid":"FYPO:0000784"},{"relation_name":"is_a","term_name":"abolished protein localization to lateral cortical node","termid":"FYPO:0003713"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"output_of","termid":"FYPO:0000138"},{"rel_name":"has_part","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"has_part","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"output_of","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0001320","FYPO:0000138","FYPO:0001985","FYPO:0000002"],"is_obsolete":false,"name":"abolished protein localization to lateral cortical node, with protein mislocalized to nucleus","synonyms":[{"name":"abolished protein localisation to lateral cortical node, with protein mislocalised to nucleus","type":"exact"},{"name":"abolished protein localization to lateral cortical node, with protein mislocalized to nucleus, during mitotic cell cycle","type":"related"},{"name":"abolished protein localization to lateral cortical node, with protein mislocalized to nucleus, during vegetative growth","type":"exact"},{"name":"protein localization to lateral cortical node abolished, with protein mislocalized to nucleus","type":"exact"}],"termid":"FYPO:0003716"}


id: PBO:0067934
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 5S ribosomal pseudogene 236","termid":"PBO:0067934"}


id: GO:0043255
data:
  {"annotated_genes":["SJAG_00424","SJAG_04462","SJAG_02278","SJAG_00963","SJAG_04509","SJAG_03705","SJAG_01787","SJAG_01376","SJAG_04771","SJAG_04668","SJAG_04666","SJAG_00610"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[77815,76149],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0045719"},{"annotations":[83308,88052],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0140748"},{"annotations":[83685],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0032951"},{"annotations":[112999,86466,88038,98290,100733],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0090334"},{"annotations":[85177,98292,88058,90529],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0070610"}]},"cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of carbohydrates.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of carbohydrate metabolic process","termid":"GO:0006109"},{"relation_name":"is_a","term_name":"regulation of biosynthetic process","termid":"GO:0009889"},{"relation_name":"regulates","term_name":"carbohydrate biosynthetic process","termid":"GO:0016051"}],"gene_count":12,"genes_by_uniquename":{"SJAG_00424":null,"SJAG_00610":null,"SJAG_00963":null,"SJAG_01376":null,"SJAG_01787":null,"SJAG_02278":null,"SJAG_03705":null,"SJAG_04462":null,"SJAG_04509":null,"SJAG_04666":null,"SJAG_04668":null,"SJAG_04771":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0005975"}],"interesting_parent_ids":["GO:0005975","GO:0008150"],"is_obsolete":false,"name":"regulation of carbohydrate biosynthetic process","references_by_uniquename":{"GO_REF:0000107":null,"PMID:21873635":null},"synonyms":[{"name":"regulation of carbohydrate anabolism","type":"exact"},{"name":"regulation of carbohydrate biosynthesis","type":"exact"},{"name":"regulation of carbohydrate formation","type":"exact"},{"name":"regulation of carbohydrate synthesis","type":"exact"}],"termid":"GO:0043255","terms_by_termid":{"GO:0032951":null,"GO:0045719":null,"GO:0070610":null,"GO:0090334":null,"GO:0140748":null}}


id: PATO:0001484
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A quality of a process which occurs near to or not long before the present.","definition_xrefs":["WordNet:WordNet"],"direct_ancestors":[{"relation_name":"is_a","term_name":"onset quality","termid":"PATO:0002325"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"recent","termid":"PATO:0001484"}


id: GO:0032166
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"Arrays of septin filaments, or bars, found in a series of filamentous structures. Observed in the chlamydospore membrane during chlamydospore formation.","definition_xrefs":["PMID:16151244","GOC:krc"],"direct_ancestors":[{"relation_name":"is_a","term_name":"septin filament array","termid":"GO:0032160"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"chlamydospore septin filament array","termid":"GO:0032166"}


id: RO:0002517
data:
  {"annotation_feature_type":"gene","cv_name":"relationship","definition":"inverse of has start sequence","direct_ancestors":[{"relation_name":"is_a","term_name":"is_subsequence_of","termid":"RO:0002525"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"is_start_sequence_of","termid":"RO:0002517"}


id: GO:1902157
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of response to G2 DNA damage checkpoint signaling.","definition_xrefs":["GOC:TermGenie","GOC:mtg_cell_cycle"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of response to DNA damage checkpoint signaling","termid":"GO:1902153"},{"relation_name":"regulates","term_name":"response to G2 DNA damage checkpoint signaling","termid":"GO:0072426"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of response to G2 DNA damage checkpoint signaling","synonyms":[{"name":"regulation of G2/M transition DNA damage checkpoint effector process","type":"exact"},{"name":"regulation of response to signal involved in G2/M transition DNA damage checkpoint","type":"exact"}],"termid":"GO:1902157"}


id: PBO:0064527
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA polymerase III subunit G","termid":"PBO:0064527"}


id: PBO:0039334
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"alpha kinase 1","termid":"PBO:0039334"}


id: GO:0072006
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of the nephron over time, from its formation to the mature structure. A nephron is the functional unit of the kidney.","definition_xrefs":["GOC:mtg_kidney_jan10"],"direct_ancestors":[{"relation_name":"is_a","term_name":"anatomical structure development","termid":"GO:0048856"},{"relation_name":"part_of","term_name":"kidney development","termid":"GO:0001822"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"nephron development","synonyms":[{"name":"nephrogenesis","type":"related"}],"termid":"GO:0072006"}


id: MOD:00673
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-asparagine residue to a methylated asparagine, such as N4-methyl-L-asparagine, or N4,N4-dimethyl-L-asparagine.","definition_xrefs":["PubMed:18688235"],"direct_ancestors":[{"relation_name":"is_a","term_name":"methylated residue","termid":"MOD:00427"},{"relation_name":"is_a","term_name":"modified L-asparagine residue","termid":"MOD:00903"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"methylated asparagine","synonyms":[{"name":"MeAsn","type":"exact"}],"termid":"MOD:00673"}


id: PR:O13779
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPAC17A2.14 gene.","definition_xrefs":["PRO:DNx","UniProtKB:O13779"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"metal ion transporter C17A12.14 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC17A2.14","synonyms":[{"name":"Spom972h-SPAC17A2.14","type":"exact"}],"termid":"PR:O13779"}


id: PBO:0039780
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"aquaporin 7 pseudogene 5","termid":"PBO:0039780"}


id: PBO:0068143
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 5S ribosomal pseudogene 450","termid":"PBO:0068143"}


id: CHEBI:29105
data:
  {"annotation_feature_type":"gene","cv_name":"chebi_ontology","definition":"A zinc cation that has formula Zn.","direct_ancestors":[{"relation_name":"is_a","term_name":"chemical entity","termid":"CHEBI:24431"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc(2+)","termid":"CHEBI:29105"}


id: GO:0140810
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: H2O + histone H1 L-arginyl (position 54)= histone H1 L-citrullyl (position 54) + NH4+, resulting in histone H1 citrullination at position 54.","definition_xrefs":["PMID:24463520"],"direct_ancestors":[{"relation_name":"is_a","term_name":"histone arginine deiminase activity","termid":"GO:0140794"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0140096"},{"rel_name":"is_a","termid":"GO:0016810"},{"rel_name":"is_a","termid":"GO:0016787"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016810","GO:0016787","GO:0140096"],"is_obsolete":false,"name":"histone H1R54 arginine deiminase activity","synonyms":[{"name":"H1-R54 citrullination","type":"exact"},{"name":"histone H1-R54 deiminase activity","type":"exact"},{"name":"histone-arginine deiminase activity (H1-R54 specific)","type":"exact"}],"termid":"GO:0140810"}


id: GO:0071728
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The progression of the beak over time from its initial formation until its mature state. The avian beak is an external anatomical structure, in the head region, that is adapted for feeding self and young, catching prey, probing, etc. It encompasses, but is not restricted to, the maxilla, mandible, maxillary rhamphotheca, mandibular rhamphotheca, nostril, nasal fossa, nasal bones, egg tooth and rictus.","definition_xrefs":["GOC:lp","ISBN:0702008729"],"direct_ancestors":[{"relation_name":"is_a","term_name":"anatomical structure development","termid":"GO:0048856"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"beak development","termid":"GO:0071728"}


id: PBO:0003720
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DNA-directed RNA polymerase I, II and III subunit Rpc10","termid":"PBO:0003720"}


id: GO:1990970
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a trans-activation response (TAR) element, a hairpin RNA structure located at the 5' end of all HIV-1 transcripts, and which is required for trans-activation of a viral promoter.","definition_xrefs":["GOC:bf","GOC:PARL","PMID:25116364","Wikipedia:Trans-activation_response_element_(TAR)"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pre-miRNA binding","termid":"GO:0070883"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003723"}],"interesting_parent_ids":["GO:0005488","GO:0003674","GO:0003723"],"is_obsolete":false,"name":"trans-activation response element binding","synonyms":[{"name":"TAR binding","type":"exact"}],"termid":"GO:1990970"}


id: GO:0050558
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: alpha-maltose = beta-maltose.","definition_xrefs":["RHEA:21228","EC:5.1.3.21"],"direct_ancestors":[{"relation_name":"is_a","term_name":"racemase and epimerase activity, acting on carbohydrates and derivatives","termid":"GO:0016857"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016853"}],"interesting_parent_ids":["GO:0016853","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"maltose epimerase activity","secondary_identifiers":["MetaCyc:5.1.3.21-RXN","KEGG_REACTION:R07319"],"synonyms":[{"name":"maltose 1-epimerase activity","type":"related"}],"termid":"GO:0050558"}


id: GO:0032426
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A distinct compartment at the tip of a stereocilium, distal to the site of attachment to the apical cell surface. It consists of a dense matrix bridging the barbed ends of the stereocilium actin filaments with the overlying plasma membrane, is dynamic compared to the shaft, and is required for stereocilium elongation.","definition_xrefs":["PMID:17021180","GOC:krc","PMID:27565685","GOC:ecd"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular anatomical entity","termid":"GO:0110165"},{"relation_name":"part_of","term_name":"stereocilium","termid":"GO:0032420"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"stereocilium tip","termid":"GO:0032426"}


id: PBO:0061955
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 2 subfamily A member 9 pseudogene","termid":"PBO:0061955"}


id: PBO:0039835
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Rho GTPase activating protein 5","termid":"PBO:0039835"}


id: GO:0047065
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: O2 + 2 sulochrin = 2 (2R)-bisdechlorogeodin + 2 H2O.","definition_xrefs":["RHEA:22616","EC:1.21.3.5"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with oxygen as acceptor","termid":"GO:0046993"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016491","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"sulochrin oxidase [(-)-bisdechlorogeodin-forming] activity","secondary_identifiers":["KEGG_REACTION:R00061","MetaCyc:1.10.3.8-RXN"],"synonyms":[{"name":"sulochrin oxidase activity","type":"broad"},{"name":"sulochrin:oxygen oxidoreductase (cyclizing, (-)-specific)","type":"related"}],"termid":"GO:0047065"}


id: GO:0097203
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The tip or margin of the progressing circular lamella that engulfs a particle during phagocytosis. When the two lips of the cup fuse it is converted into a phagosome.","definition_xrefs":["PMID:20200225","GOC:pf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular anatomical entity","termid":"GO:0110165"},{"relation_name":"part_of","term_name":"phagocytic cup","termid":"GO:0001891"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005886"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005886","GO:0005575"],"is_obsolete":false,"name":"phagocytic cup lip","termid":"GO:0097203"}


id: PBO:0059238
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial ribosomal protein L11","termid":"PBO:0059238"}


id: GO:0098694
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of synaptic vesicle budding from presynaptic endocytic zone membrane.","definition_xrefs":["GOC:dos"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of organelle organization","termid":"GO:0033043"},{"relation_name":"regulates","term_name":"synaptic vesicle budding from presynaptic endocytic zone membrane","termid":"GO:0016185"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0061024"}],"interesting_parent_ids":["GO:0061024","GO:0008150"],"is_obsolete":false,"name":"regulation of synaptic vesicle budding from presynaptic endocytic zone membrane","termid":"GO:0098694"}


id: PBO:0046540
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"endogenous retrovirus group E member 3","termid":"PBO:0046540"}


id: PBO:0060928
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"neurofascin","termid":"PBO:0060928"}


id: FYPO:0002842
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to the centromere outer repeat regions of a chromosome is decreased.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal protein localization to centromere during vegetative growth","termid":"FYPO:0000449"},{"relation_name":"is_a","term_name":"decreased protein localization to chromosome during vegetative growth","termid":"FYPO:0002839"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0001320","FYPO:0000002","FYPO:0000138","FYPO:0001985"],"is_obsolete":false,"name":"decreased protein localization to centromere outer repeat","synonyms":[{"name":"decreased protein localisation to centromere outer repeat","type":"exact"},{"name":"decreased protein localisation to centromeric outer repeat region","type":"exact"},{"name":"decreased protein localization to centromere outer repeat during mitotic cell cycle","type":"related"},{"name":"decreased protein localization to centromere outer repeat during vegetative growth","type":"exact"},{"name":"decreased protein localization to chromosome, centric outer repeat region","type":"exact"},{"name":"decreased protein localization to chromosome, centromeric outer repeat region","type":"exact"},{"name":"decreased protein localization to pericentric region","type":"related"},{"name":"decreased protein localization to pericentromeric region","type":"related"},{"name":"reduced protein localization to centromere outer repeat","type":"exact"}],"termid":"FYPO:0002842"}


id: PBO:0065595
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"prothymosin alpha pseudogene 11","termid":"PBO:0065595"}


id: PBO:0066006
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Ral GEF with PH domain and SH3 binding motif 1","termid":"PBO:0066006"}


id: SO:0001244
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"The 60-70 nucleotide region remain after Drosha processing of the primary transcript, that folds back upon itself to form a hairpin structure.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"miRNA_primary_transcript_region","termid":"SO:0001243"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pre_miRNA","synonyms":[{"name":"pre-miRNA","type":"exact"}],"termid":"SO:0001244"}


id: FYPO:0008085
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which autophagic degradation of the nucleus is abolished.","direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal macroautophagy","termid":"FYPO:0000163"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0001985","FYPO:0000002"],"is_obsolete":false,"name":"abnormal nucleophagy","termid":"FYPO:0008085"}


id: PBO:0052442
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"KLF transcription factor 2","termid":"PBO:0052442"}


id: PBO:0081143
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ZFP57 zinc finger protein","termid":"PBO:0081143"}


id: GO:0072671
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of proteins transported from mitochondria and targeted to cytoplasmic proteasomes for degradation as a response to oxidative stress conditions.","definition_xrefs":["PMID:21070972","PMID:21109188","GOC:mcc"],"direct_ancestors":[{"relation_name":"is_a","term_name":"proteasome-mediated ubiquitin-dependent protein catabolic process","termid":"GO:0043161"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0030163"},{"rel_name":"is_a","termid":"GO:0030163"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0030163","GO:0008150"],"is_obsolete":false,"name":"mitochondria-associated ubiquitin-dependent protein catabolic process","synonyms":[{"name":"MAD","type":"exact"},{"name":"mitochondria-associated protein catabolic process","type":"exact"},{"name":"mitochondria-associated protein degradation","type":"exact"},{"name":"mitochondrion-associated protein catabolic process","type":"exact"}],"termid":"GO:0072671"}


id: PBO:0065075
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PRICKLE2 divergent transcript","termid":"PBO:0065075"}


id: SO:0000149
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A contiguous sequence derived from sequence assembly. Has no gaps, but may contain N's from unavailable bases.","definition_xrefs":["SO:ls"],"direct_ancestors":[{"relation_name":"is_a","term_name":"assembly_component","termid":"SO:0000143"},{"relation_name":"is_a","term_name":"sequence_assembly","termid":"SO:0000353"},{"relation_name":"part_of","term_name":"supercontig","termid":"SO:0000148"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"contig","secondary_identifiers":["http://en.wikipedia.org/wiki/Contig"],"termid":"SO:0000149"}


id: PBO:0013805
data:
  {"annotation_feature_type":"gene","cv_name":"complementation","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"functionally complements S. cerevisiae HUT1","termid":"PBO:0013805"}


id: GO:0051991
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2,6-diaminopimelyl-D-alanyl-D-alanine-diphosphoundecaprenol + UDP-N-acetyl-D-glucosamine = N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2,6-diaminopimelyl-D-alanyl-D-alanine-diphosphoundecaprenyl-N-acetylglucosamine + UDP.","definition_xrefs":["MetaCyc:NACGLCTRANS-RXN"],"direct_ancestors":[{"relation_name":"is_a","term_name":"acetylglucosaminyltransferase activity","termid":"GO:0008375"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016757"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016740"}],"interesting_parent_ids":["GO:0016740","GO:0003674","GO:0016757","GO:0003824"],"is_obsolete":false,"name":"UDP-N-acetyl-D-glucosamine:N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2,6-diaminopimelyl-D-alanyl-D-alanine-diphosphoundecaprenol 4-beta-N-acetylglucosaminlytransferase activity","secondary_identifiers":["EC:2.4.1.227","RHEA:31227"],"termid":"GO:0051991"}


id: GO:0019804
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"OBSOLETE. A heterodimer which acts as a quinolinate synthetase; quinolinate synthetase B (L-aspartate oxidase) catalyzes the oxidation of L-aspartate to L-iminoaspartate; quinolinate synthetase A condenses L-imidoaspartate and dihydroxyacetone to quinolinate.","definition_xrefs":["UniProtKB:P10902"],"gene_count":0,"genotype_count":0,"name":"obsolete quinolinate synthetase complex (obsolete GO:0019804)","synonyms":[{"name":"quinolinate synthetase complex","type":"exact"}],"termid":"GO:0019804"}


id: FYPO:0002013
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which protein oxidation is normal (i.e. indistinguishable from wild type).","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal protein modification during vegetative growth","termid":"FYPO:0000549"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0001312"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001312","FYPO:0000257","FYPO:0001320"],"is_obsolete":false,"name":"normal protein oxidation during vegetative growth","synonyms":[{"name":"normal protein oxidation during mitotic cell cycle","type":"related"},{"name":"normal protein/peptide oxidation during vegetative growth","type":"exact"}],"termid":"FYPO:0002013"}


id: GO:1990188
data:
  {"annotated_genes":["SJAG_00471","SJAG_03689"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[100776,111155],"is_not":false,"summary":null,"term":"GO:1990188"}]},"cv_name":"molecular_function","definition":"Binding to euchromatin, a dispersed and relatively uncompacted form of chromatin.","definition_xrefs":["GOC:vw","PMID:22431512"],"direct_ancestors":[{"relation_name":"is_a","term_name":"chromatin binding","termid":"GO:0003682"}],"gene_count":2,"genes_by_uniquename":{"SJAG_00471":null,"SJAG_03689":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005488"}],"interesting_parent_ids":["GO:0003674","GO:0005488"],"is_obsolete":false,"name":"euchromatin binding","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:1990188","terms_by_termid":{"GO:1990188":null}}


id: PR:O74745
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- anp1 gene.","definition_xrefs":["UniProtKB:O74745","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mannan polymerase II complex anp1 subunit (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC1734.04","synonyms":[{"name":"M-Pol II subunit anp1 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-anp1","type":"exact"}],"termid":"PR:O74745"}


id: GO:0016311
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process of removing one or more phosphoric (ester or anhydride) residues from a molecule.","definition_xrefs":["ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phosphate-containing compound metabolic process","termid":"GO:0006796"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"dephosphorylation","secondary_identifiers":["Wikipedia:Dephosphorylation"],"termid":"GO:0016311"}


id: GO:0015596
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: ATP + H2O + quaternary amine(out) = ADP + phosphate + quaternary amine(in).","definition_xrefs":["TC:3.A.1.12.1","EC:3.6.3.32"],"gene_count":0,"genotype_count":0,"name":"obsolete glycine betaine/proline porter activity (obsolete GO:0015596)","synonyms":[{"name":"glycine betaine/proline porter activity","type":"exact"}],"termid":"GO:0015596"}


id: PBO:0002072
data:
  {"annotation_feature_type":"gene","cv_name":"EC numbers","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"2.4.1.15","termid":"PBO:0002072"}


id: PBO:0056019
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"LSM family member 14B","termid":"PBO:0056019"}


id: GO:2000293
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of defecation.","definition_xrefs":["GOC:obol"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of secretion","termid":"GO:0051048"},{"relation_name":"is_a","term_name":"negative regulation of digestive system process","termid":"GO:0060457"},{"relation_name":"is_a","term_name":"regulation of defecation","termid":"GO:2000292"},{"relation_name":"negatively_regulates","term_name":"defecation","termid":"GO:0030421"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"negatively_regulates","termid":"GO:0006810"},{"rel_name":"regulates","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0008150","GO:0006810"],"is_obsolete":false,"name":"negative regulation of defecation","termid":"GO:2000293"}


id: PBO:0087551
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Subunit of RNase MRP; RNase MRP processes pre-rRNA and has a role in cell cycle-regulated degradation of daughter cell-specific mRNAs; unlike most subunits, not shared between RNase MRP and nuclear RNase P","termid":"PBO:0087551"}


id: PBO:0016572
data:
  {"annotation_feature_type":"gene","cv_name":"complementation","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"functionally complements S. cerevisiae RPC40","termid":"PBO:0016572"}


id: PATO:0001103
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0001103 relative stiffness value (obsolete PATO:0001103)","termid":"PATO:0001103"}


id: GO:0000107
data:
  {"annotated_genes":["SJAG_03775"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[75202],"is_not":false,"summary":null,"term":"GO:0000107"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: phosphoribulosylformimino-AICAR-P + L-glutamine = D-erythro-imidazole-glycerol-phosphate + aminoimidazole carboxamide ribonucleotide + L-glutamate + 2 H+.","definition_xrefs":["RHEA:24793"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pentosyltransferase activity","termid":"GO:0016763"}],"gene_count":1,"genes_by_uniquename":{"SJAG_03775":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0016757"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016757","GO:0016740","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"imidazoleglycerol-phosphate synthase activity","references_by_uniquename":{"PMID:21873635":null},"secondary_identifiers":["MetaCyc:GLUTAMIDOTRANS-RXN"],"synonyms":[{"name":"glutamine amidotransferase:cyclase activity","type":"broad"},{"name":"imidazole glycerol phosphate synthase activity","type":"exact"},{"name":"imidazole-glycerol-phosphate synthase activity","type":"related"},{"name":"imidazoleglycerol phosphate synthase activity","type":"exact"}],"termid":"GO:0000107","terms_by_termid":{"GO:0000107":null}}


id: GO:0033867
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: ATP + Fas-activated serine/threonine protein = ADP + Fas-activated serine/threonine phosphoprotein.","definition_xrefs":["EC:2.7.11.8"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein serine/threonine kinase activity","termid":"GO:0004674"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016301"},{"rel_name":"is_a","termid":"GO:0004672"},{"rel_name":"is_a","termid":"GO:0140096"},{"rel_name":"is_a","termid":"GO:0016740"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0140096","GO:0004672","GO:0016740","GO:0016301"],"is_obsolete":false,"name":"Fas-activated serine/threonine kinase activity","secondary_identifiers":["MetaCyc:2.7.11.8-RXN"],"synonyms":[{"name":"ATP:Fas-activated serine/threonine protein phosphotransferase activity","type":"related"},{"name":"FAST","type":"related"},{"name":"FASTK","type":"related"},{"name":"STK10","type":"related"}],"termid":"GO:0033867"}


id: PBO:0073482
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"serum/glucocorticoid regulated kinase family member 3","termid":"PBO:0073482"}


id: PBO:0075082
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nucleolar RNA, C/D box 132","termid":"PBO:0075082"}


id: GO:0052657
data:
  {"annotated_genes":["SJAG_06634"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[89379],"is_not":false,"summary":null,"term":"GO:0052657"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: GMP + diphosphate = guanine + 5-phospho-alpha-D-ribose 1-diphosphate.","definition_xrefs":["GOC:curators","EC:2.4.2.8"],"direct_ancestors":[{"relation_name":"is_a","term_name":"purine phosphoribosyltransferase activity","termid":"GO:0106130"}],"gene_count":1,"genes_by_uniquename":{"SJAG_06634":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0016757"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003824","GO:0016740","GO:0016757","GO:0003674"],"is_obsolete":false,"name":"guanine phosphoribosyltransferase activity","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["MetaCyc:GUANPRIBOSYLTRAN-RXN","KEGG_REACTION:R01229","RHEA:25424"],"synonyms":[{"name":"6-hydroxypurine phosphoribosyltransferase activity","type":"related"},{"name":"6-mercaptopurine phosphoribosyltransferase activity","type":"related"},{"name":"GMP pyrophosphorylase activity","type":"related"},{"name":"GPRT","type":"related"},{"name":"Transphosphoribosidase activity","type":"broad"},{"name":"guanine-hypoxanthine phosphoribosyltransferase activity","type":"broad"},{"name":"guanosine 5'-phosphate pyrophosphorylase activity","type":"related"},{"name":"guanosine phosphoribosyltransferase activity","type":"related"},{"name":"guanylate pyrophosphorylase activity","type":"related"},{"name":"guanylic pyrophosphorylase activity","type":"related"},{"name":"hypoxanthine-guanine phosphoribosyltransferase activity","type":"broad"},{"name":"purine-6-thiol phosphoribosyltransferase activity","type":"related"}],"termid":"GO:0052657","terms_by_termid":{"GO:0052657":null}}


id: PBO:0108596
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dual specificity phosphatase 13A","termid":"PBO:0108596"}


id: PBO:0087101
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Ribosomal protein 28 (rp28) of the small (40S) ribosomal subunit; required for translational accuracy; homologous to mammalian ribosomal protein S23 and bacterial S12; RPS23B has a paralog, RPS23A, that arose from the whole genome duplication; deletion of both RPS23A and RPS23B is lethal","termid":"PBO:0087101"}


id: PBO:0061674
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nucleoporin 62","termid":"PBO:0061674"}


id: GO:0048378
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of lateral mesoderm cell fate specification.","definition_xrefs":["GOC:jid"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of mesodermal cell fate specification","termid":"GO:0042661"},{"relation_name":"regulates","term_name":"lateral mesodermal cell fate specification","termid":"GO:0048377"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of lateral mesodermal cell fate specification","synonyms":[{"name":"regulation of lateral plate mesodermal cell fate specification","type":"exact"}],"termid":"GO:0048378"}


id: GO:0048056
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which relatively unspecialized cells acquire the specialized features of R3 and R4 photoreceptors. An example of this process is found in Drosophila melanogaster.","definition_xrefs":["GOC:jid"],"direct_ancestors":[{"relation_name":"is_a","term_name":"compound eye photoreceptor cell differentiation","termid":"GO:0001751"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"R3/R4 cell differentiation","termid":"GO:0048056"}


id: PATO:0000006
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0000006 process (obsolete PATO:0000006)","termid":"PATO:0000006"}


id: PR:Q9UTM0
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- iec1 gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q9UTM0"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"INO80 complex subunit 1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC144.02","synonyms":[{"name":"Spom972h-iec1","type":"exact"}],"termid":"PR:Q9UTM0"}


id: PBO:0070554
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L7a pseudogene 20","termid":"PBO:0070554"}


id: GO:0008257
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: ATP + protein L-histidine = ADP + protein N(tau)-phospho-L-histidine.","definition_xrefs":["EC:2.7.13.2"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein histidine kinase activity","termid":"GO:0004673"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0004672"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0140096"},{"rel_name":"is_a","termid":"GO:0016301"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003824","GO:0004672","GO:0140096","GO:0003674","GO:0016301","GO:0016740"],"is_obsolete":false,"name":"protein histidine tele-kinase activity","secondary_identifiers":["RHEA:11860","MetaCyc:2.7.13.2-RXN"],"synonyms":[{"name":"ATP:protein-L-histidine N-tele-phosphotransferase activity","type":"related"},{"name":"ATP:protein-L-histidine Ntau-phosphotransferase activity","type":"related"},{"name":"protein-histidine tele-kinase activity","type":"exact"}],"termid":"GO:0008257"}


id: GO:1900342
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of methane biosynthetic process from dimethyl sulfide.","definition_xrefs":["GOC:TermGenie","GOC:mengo_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of sulfur metabolic process","termid":"GO:0042762"},{"relation_name":"is_a","term_name":"regulation of cellular respiration","termid":"GO:0043457"},{"relation_name":"is_a","term_name":"regulation of alkane biosynthetic process","termid":"GO:1901577"},{"relation_name":"regulates","term_name":"methane biosynthetic process from dimethyl sulfide","termid":"GO:2001131"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0006091"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0006790"}],"interesting_parent_ids":["GO:0006091","GO:0006790","GO:0008150"],"is_obsolete":false,"name":"regulation of methane biosynthetic process from dimethyl sulfide","termid":"GO:1900342"}


id: PBO:0018226
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sec14 cytosolic factor family, glycerophospholipid-transfer protein Sec14","termid":"PBO:0018226"}


id: PBO:0072445
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein S29 pseudogene 9","termid":"PBO:0072445"}


id: MOD:01245
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-aspartic acid residue to the potassium aspartate salt.","definition_xrefs":["Unimod:530#D"],"direct_ancestors":[{"relation_name":"is_a","term_name":"modified L-aspartic acid residue","termid":"MOD:00904"},{"relation_name":"is_a","term_name":"monopotassium salt","termid":"MOD:01072"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"potassium L-aspartate","synonyms":[{"name":"Cation:K","type":"related"},{"name":"Replacement of proton by potassium","type":"related"}],"termid":"MOD:01245"}


id: PBO:0064954
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PRAME family member 6","termid":"PBO:0064954"}


id: GO:0140256
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of cellular response to phosphate starvation.","definition_xrefs":["PMID:29414789"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of cell communication","termid":"GO:0010648"},{"relation_name":"is_a","term_name":"negative regulation of response to nutrient levels","termid":"GO:0032108"},{"relation_name":"is_a","term_name":"regulation of cellular response to phosphate starvation","termid":"GO:0140255"},{"relation_name":"negatively_regulates","term_name":"cellular response to phosphate starvation","termid":"GO:0016036"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of cellular response to phosphate starvation","termid":"GO:0140256"}


id: PBO:0078094
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"trafficking protein particle complex subunit 3","termid":"PBO:0078094"}


id: SO:0000036
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A DNA region that is required for the binding of chromatin to the nuclear matrix.","definition_xrefs":["SO:ma"],"direct_ancestors":[{"relation_name":"is_a","term_name":"chromosomal_regulatory_element","termid":"SO:0000626"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"matrix_attachment_site","secondary_identifiers":["http://en.wikipedia.org/wiki/Matrix_attachment_site"],"synonyms":[{"name":"INSDC_feature:regulatory","type":"broad"},{"name":"INSDC_qualifier:matrix_attachment_region","type":"exact"},{"name":"MAR","type":"exact"},{"name":"S/MAR","type":"exact"},{"name":"S/MAR element","type":"related"},{"name":"SMAR","type":"exact"},{"name":"matrix association region","type":"exact"},{"name":"matrix attachment region","type":"exact"},{"name":"matrix attachment site","type":"exact"},{"name":"nuclear matrix association region","type":"exact"},{"name":"nuclear matrix attachment site","type":"exact"},{"name":"scaffold attachment site","type":"exact"},{"name":"scaffold matrix attachment region","type":"exact"}],"termid":"SO:0000036"}


id: GO:0048035
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of heme O, a derivative of heme containing a 17-carbon hydroxyethylfarnesyl side chain at position 8 of the tetrapyrrole macrocycle.","definition_xrefs":["GOC:jid"],"direct_ancestors":[{"relation_name":"is_a","term_name":"heme catabolic process","termid":"GO:0042167"},{"relation_name":"is_a","term_name":"heme O metabolic process","termid":"GO:0048033"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044248"},{"rel_name":"is_a","termid":"GO:0033013"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0044248","GO:0033013"],"is_obsolete":false,"name":"heme O catabolic process","synonyms":[{"name":"haem O catabolic process","type":"exact"},{"name":"haem O catabolism","type":"exact"},{"name":"heme O breakdown","type":"exact"},{"name":"heme O catabolism","type":"exact"},{"name":"heme O degradation","type":"exact"}],"termid":"GO:0048035"}


id: PBO:0045408
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DPPA3 pseudogene 10","termid":"PBO:0045408"}


id: GO:0044322
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A subcompartment of the endoplasmic reticulum in which proteins with improper or incorrect folding accumulate. Enzymes in this compartment direct proteins with major folding problems to translocation to the cytosol and degradation, and proteins with minor folding problems to the ER, to interact with chaperon proteins.","definition_xrefs":["PMID:11408579"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular anatomical entity","termid":"GO:0110165"},{"relation_name":"part_of","term_name":"endoplasmic reticulum","termid":"GO:0005783"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005783"}],"interesting_parent_ids":["GO:0005737","GO:0005575","GO:0005783"],"is_obsolete":false,"name":"endoplasmic reticulum quality control compartment","synonyms":[{"name":"ER quality control compartment","type":"exact"},{"name":"ER-derived quality control compartment","type":"related"},{"name":"ERQC","type":"exact"}],"termid":"GO:0044322"}


id: PBO:0057344
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 532","termid":"PBO:0057344"}


id: PATO:0001921
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A positional quality inhering in a bearer by virtue of the bearer's being positioned towards the front of an organism.","definition_xrefs":["PATOC:mb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mislocalised","termid":"PATO:0000628"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mislocalised anteriorly","termid":"PATO:0001921"}


id: PBO:0005568
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"thioredoxin family protein","termid":"PBO:0005568"}


id: FYPO:0003328
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A microtubule organization phenotype observed in the vegetative growth phase of the life cycle in which the orientation of cytoplasmic microtubules within a cell is abnormal during interphase of the mitotic cell cycle. The normal orientation is parallel to the long axis of the cell.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal interphase microtubules","termid":"FYPO:0006101"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"output_of","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"output_of","termid":"FYPO:0000054"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0002399"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0000054","FYPO:0000002","FYPO:0001985","FYPO:0005447","FYPO:0001320","FYPO:0002399"],"is_obsolete":false,"name":"misoriented interphase microtubules","synonyms":[{"name":"misoriented cytoplasmic microtubules during mitotic interphase","type":"exact"},{"name":"misoriented interphase cytoplasmic microtubules","type":"exact"},{"name":"misoriented interphase microtubules during mitotic cell cycle","type":"related"},{"name":"misoriented interphase microtubules during vegetative growth","type":"exact"}],"termid":"FYPO:0003328"}


id: PBO:0028525
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_histone_H3-K9K14_acetylation","termid":"PBO:0028525"}


id: GO:0099628
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process by which diffusing neurotransmitter receptor becomes trapped in region of the plasma membrane.","definition_xrefs":["PMID:18832033"],"direct_ancestors":[{"relation_name":"is_a","term_name":"receptor diffusion trapping","termid":"GO:0098953"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0051179"}],"interesting_parent_ids":["GO:0051179","GO:0008150"],"is_obsolete":false,"name":"neurotransmitter receptor diffusion trapping","termid":"GO:0099628"}


id: GO:0031095
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The lipid bilayer surrounding the platelet dense tubular network.","definition_xrefs":["PMID:1322202","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"bounding membrane of organelle","termid":"GO:0098588"},{"relation_name":"part_of","term_name":"platelet dense tubular network","termid":"GO:0031094"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"platelet dense tubular network membrane","termid":"GO:0031095"}


id: SO:0000807
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A tag that is engineered.","definition_xrefs":["SO:xp"],"direct_ancestors":[{"relation_name":"has_quality","term_name":"engineered","termid":"SO:0000783"},{"relation_name":"is_a","term_name":"tag","termid":"SO:0000324"},{"relation_name":"is_a","term_name":"engineered_region","termid":"SO:0000804"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"engineered_tag","synonyms":[{"name":"engineered tag","type":"exact"}],"termid":"SO:0000807"}


id: PBO:0075943
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"stromal antigen 2","termid":"PBO:0075943"}


id: PBO:0109833
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SAGA complex, phosphatidylinositol pseudokinase subunit Tra1","termid":"PBO:0109833"}


id: GO:0035458
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an interferon-beta stimulus. Interferon-beta is a type I interferon.","definition_xrefs":["GOC:sl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to interferon-beta","termid":"GO:0035456"},{"relation_name":"is_a","term_name":"cellular response to cytokine stimulus","termid":"GO:0071345"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cellular response to interferon-beta","synonyms":[{"name":"cellular response to beta-1 interferon","type":"related"},{"name":"cellular response to fiblaferon","type":"exact"},{"name":"cellular response to fibroblast interferon","type":"exact"}],"termid":"GO:0035458"}


id: PBO:0087579
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Subunit of the anaphase-promoting complex (APC); APC is an E3 ubiquitin ligase that regulates the metaphase-anaphase transition and exit from mitosis; required for activation of the daughter-specific gene expression and spore wall maturation","termid":"PBO:0087579"}


id: PBO:0041751
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cullin associated and neddylation dissociated 1","termid":"PBO:0041751"}


id: PBO:0047427
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Fc epsilon receptor Ig","termid":"PBO:0047427"}


id: GO:0030213
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of hyaluronan, the naturally occurring anionic form of hyaluronic acid, any member of a group of glycosaminoglycans, the repeat units of which consist of beta-1,4 linked D-glucuronyl-beta-(1,3)-N-acetyl-D-glucosamine.","definition_xrefs":["GOC:mah","ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"glycosaminoglycan biosynthetic process","termid":"GO:0006024"},{"relation_name":"is_a","term_name":"hyaluronan metabolic process","termid":"GO:0030212"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"hyaluronan biosynthetic process","synonyms":[{"name":"hyaluronan anabolism","type":"exact"},{"name":"hyaluronan biosynthesis","type":"exact"},{"name":"hyaluronan formation","type":"exact"},{"name":"hyaluronan synthesis","type":"exact"}],"termid":"GO:0030213"}


id: GO:0047968
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: CoA + glyoxylate + NADP+ = H+ + NADPH + oxalyl-CoA.","definition_xrefs":["EC:1.2.1.17","RHEA:21024"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor","termid":"GO:0016620"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016491"],"is_obsolete":false,"name":"glyoxylate dehydrogenase (acylating) activity","secondary_identifiers":["KEGG_REACTION:R00468","MetaCyc:GLYOXYLATE-DEHYDROGENASE-ACYLATING-RXN"],"synonyms":[{"name":"glyoxylate:NADP+ oxidoreductase (CoA-oxalylating)","type":"related"}],"termid":"GO:0047968"}


id: PBO:0083184
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Dubious open reading frame; unlikely to encode a functional protein, based on available experimental and comparative sequence data; completely overlaps the Ty1 long terminal repeat, YPRWdelta12","termid":"PBO:0083184"}


id: GO:1901773
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of lincomycin.","definition_xrefs":["GOC:TermGenie","GOC:yaf","PMID:8577249"],"direct_ancestors":[{"relation_name":"is_a","term_name":"S-glycoside catabolic process","termid":"GO:0016145"},{"relation_name":"is_a","term_name":"cellular modified amino acid catabolic process","termid":"GO:0042219"},{"relation_name":"is_a","term_name":"heterocycle catabolic process","termid":"GO:0046700"},{"relation_name":"is_a","term_name":"organic cyclic compound catabolic process","termid":"GO:1901361"},{"relation_name":"is_a","term_name":"lincomycin metabolic process","termid":"GO:1901772"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006790"},{"rel_name":"is_a","termid":"GO:0044248"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0044248","GO:0008150","GO:0006790"],"is_obsolete":false,"name":"lincomycin catabolic process","synonyms":[{"name":"lincomycin breakdown","type":"exact"},{"name":"lincomycin catabolism","type":"exact"},{"name":"lincomycin degradation","type":"exact"}],"termid":"GO:1901773"}


id: PBO:0029014
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_centromeric_outer_repeat_transcript-derived_siRNA_level","termid":"PBO:0029014"}


id: GO:0030636
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The chemical reactions and pathways resulting in the formation of derivatives of acetic acid.","definition_xrefs":["GOC:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete acetate derivative biosynthetic process (obsolete GO:0030636)","synonyms":[{"name":"acetate derivative anabolism","type":"exact"},{"name":"acetate derivative biosynthesis","type":"exact"},{"name":"acetate derivative biosynthetic process","type":"exact"},{"name":"acetate derivative formation","type":"exact"},{"name":"acetate derivative synthesis","type":"exact"}],"termid":"GO:0030636"}


id: PBO:0049045
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"G protein-coupled receptor 36","termid":"PBO:0049045"}


id: PBO:0031345
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-sensitive_to_camptothecin","termid":"PBO:0031345"}


id: GO:0048456
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process that contributes to the act of creating the structural organization of the stamen. This process pertains to the physical shaping of a rudimentary structure.","definition_xrefs":["GOC:jid"],"direct_ancestors":[{"relation_name":"is_a","term_name":"floral organ structural organization","termid":"GO:0048450"},{"relation_name":"part_of","term_name":"stamen morphogenesis","termid":"GO:0048448"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"stamen structural organization","secondary_identifiers":["GO:0048428"],"synonyms":[{"name":"stamen structural organisation","type":"exact"}],"termid":"GO:0048456"}


id: PBO:0040480
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ATXN2 antisense RNA","termid":"PBO:0040480"}


id: GO:0106198
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the translocation of an inorganic anion linked to a decarboxylation reaction.","definition_xrefs":["GOC:hjd"],"gene_count":0,"genotype_count":0,"name":"obsolete translocase activity acting on inorganic anions linked to a decarboxylation reaction (obsolete GO:0106198)","secondary_identifiers":["EC:7.3.4.-"],"termid":"GO:0106198"}


id: PBO:0088368
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"F-box protein","termid":"PBO:0088368"}


id: GO:0051983
data:
  {"annotated_genes":["SJAG_03126","SJAG_00666","SJAG_04999","SJAG_03681","SJAG_04573","SJAG_02169","SJAG_02104","SJAG_03048","SJAG_01515","SJAG_04884","SJAG_02380","SJAG_01956","SJAG_01805","SJAG_03353","SJAG_00082","SJAG_04464","SJAG_01837","SJAG_04280","SJAG_01082","SJAG_04140","SJAG_04457","SJAG_00883","SJAG_03327","SJAG_04259","SJAG_01330","SJAG_02451","SJAG_04853","SJAG_05290","SJAG_02332","SJAG_02336","SJAG_04126","SJAG_00145","SJAG_02498","SJAG_03350","SJAG_01297","SJAG_01679","SJAG_00244","SJAG_04699","SJAG_04597","SJAG_04968","SJAG_00460"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[111061,103591,86421,109006,95085,102596,99329,107214,109480],"is_not":false,"rel_names":["positively_regulates","regulates","is_a","negatively_regulates"],"summary":null,"term":"GO:1902426"},{"annotations":[101697,109705],"is_not":false,"rel_names":["is_a","regulates","negatively_regulates"],"summary":null,"term":"GO:1905318"},{"annotations":[111817],"is_not":false,"rel_names":["negatively_regulates","regulates","is_a"],"summary":null,"term":"GO:0033316"},{"annotations":[95627,94225],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1990949"},{"annotations":[95628,97744],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1990950"},{"annotations":[72834],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0007091"},{"annotations":[110714,101699,97268,105215,94947,109709],"is_not":false,"rel_names":["is_a","regulates","negatively_regulates"],"summary":null,"term":"GO:0007094"},{"annotations":[97820],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1902424"},{"annotations":[94226],"is_not":false,"rel_names":["regulates","negatively_regulates","is_a"],"summary":null,"term":"GO:1902103"},{"annotations":[98707],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:2000816"},{"annotations":[89811],"is_not":false,"rel_names":["negatively_regulates","positively_regulates","regulates","is_a"],"summary":null,"term":"GO:0140499"},{"annotations":[97828],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:1902845"},{"annotations":[107215,111171,100568],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1902425"},{"annotations":[109011],"is_not":false,"rel_names":["positively_regulates","regulates","is_a"],"summary":null,"term":"GO:1905326"},{"annotations":[90745],"is_not":false,"rel_names":["regulates","is_a","positively_regulates"],"summary":null,"term":"GO:1905191"},{"annotations":[111823],"is_not":false,"rel_names":["is_a","regulates","positively_regulates"],"summary":null,"term":"GO:0090267"},{"annotations":[89428,93246,97568,106635,109966,97838,95629],"is_not":false,"rel_names":["positively_regulates","regulates","is_a"],"summary":null,"term":"GO:0045842"},{"annotations":[111825],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1905824"},{"annotations":[89429,106465,85720,97839,111826],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0140429"},{"annotations":[95108],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1901970"},{"annotations":[90023,85721],"is_not":false,"rel_names":["part_of","is_a"],"summary":null,"term":"GO:1902846"},{"annotations":[106695],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0110161"},{"annotations":[109710],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0060629"},{"annotations":[89506,105485],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0090006"},{"annotations":[97847],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0062123"},{"annotations":[96820],"is_not":false,"rel_names":["regulates","is_a"],"summary":null,"term":"GO:1905325"},{"annotations":[106286],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0032888"},{"annotations":[110240],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0110162"}]},"cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of chromosome segregation, the process in which genetic material, in the form of chromosomes, is organized and then physically separated and apportioned to two or more sets.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of cell cycle process","termid":"GO:0010564"},{"relation_name":"regulates","term_name":"chromosome 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of chromosome segregation","references_by_uniquename":{"GO_REF:0000107":null,"PMID:21873635":null},"termid":"GO:0051983","terms_by_termid":{"GO:0007091":null,"GO:0007094":null,"GO:0032888":null,"GO:0033316":null,"GO:0045842":null,"GO:0060629":null,"GO:0062123":null,"GO:0090006":null,"GO:0090267":null,"GO:0110161":null,"GO:0110162":null,"GO:0140429":null,"GO:0140499":null,"GO:1901970":null,"GO:1902103":null,"GO:1902424":null,"GO:1902425":null,"GO:1902426":null,"GO:1902845":null,"GO:1902846":null,"GO:1905191":null,"GO:1905318":null,"GO:1905325":null,"GO:1905326":null,"GO:1905824":null,"GO:1990949":null,"GO:1990950":null,"GO:2000816":null}}


id: PBO:0061862
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"oligodendrocyte transcription factor 3","termid":"PBO:0061862"}


id: PATO:0002334
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A adhesivity which is relatively low.","definition_xrefs":["PATOC:GVG"],"direct_ancestors":[{"relation_name":"decreased_in_magnitude_relative_to","term_name":"normal","termid":"PATO:0000461"},{"relation_name":"is_a","term_name":"decreased object quality","termid":"PATO:0002303"},{"relation_name":"is_a","term_name":"adhesive","termid":"PATO:0002331"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"decreased adhesivity","termid":"PATO:0002334"}


id: PBO:0079430
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tubulin epsilon 1","termid":"PBO:0079430"}


id: PBO:0003105
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"histone deacetylase (class II) Clr3","termid":"PBO:0003105"}


id: GO:1905058
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Any calcium-induced calcium release activity that is involved in regulation of postsynaptic cytosolic calcium ion concentration.","definition_xrefs":["PMID:23639769","GOC:TermGenie","GO_REF:0000061"],"direct_ancestors":[{"relation_name":"is_a","term_name":"calcium-induced calcium release activity","termid":"GO:0048763"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0022857"}],"interesting_parent_ids":["GO:0003674","GO:0022857","GO:0005215"],"is_obsolete":false,"name":"calcium-induced calcium release activity involved in regulation of postsynaptic cytosolic calcium ion concentration","synonyms":[{"name":"calcium-induced calcium release activity involved in regulation of postsynaptic cytosolic calcium levels","type":"exact"}],"termid":"GO:1905058"}


id: PBO:0036126
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abolished_cytoplasmic_microtubule_nucleation","termid":"PBO:0036126"}


id: PBO:0081037
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger CCCH-type containing 13","termid":"PBO:0081037"}


id: GO:0030829
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the breakdown of cGMP.","definition_xrefs":["GOC:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete regulation of cGMP catabolic process (obsolete GO:0030829)","synonyms":[{"name":"regulation of cGMP breakdown","type":"exact"},{"name":"regulation of cGMP catabolism","type":"exact"},{"name":"regulation of cGMP degradation","type":"exact"}],"termid":"GO:0030829"}


id: PBO:0067583
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 741, pseudogene","termid":"PBO:0067583"}


id: PBO:0051621
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"interleukin enhancer binding factor 3","termid":"PBO:0051621"}


id: GO:0001018
data:
  {"annotated_genes":["SJAG_03014"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[76454],"is_not":false,"summary":null,"term":"GO:0001018"}]},"cv_name":"molecular_function","definition":"Binding to a DNA region that controls the transcription of the mitochondrial DNA.","definition_xrefs":["GOC:txnOH","GOC:vw","PMID:20056105"],"direct_ancestors":[{"relation_name":"is_a","term_name":"transcription cis-regulatory region binding","termid":"GO:0000976"}],"gene_count":1,"genes_by_uniquename":{"SJAG_03014":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003677"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0000976"},{"rel_name":"is_a","termid":"GO:0005488"}],"interesting_parent_ids":["GO:0003674","GO:0005488","GO:0000976","GO:0003677"],"is_obsolete":false,"name":"mitochondrial promoter sequence-specific DNA binding","references_by_uniquename":{"PMID:21873635":null},"secondary_identifiers":["GO:0070364","GO:0001045","GO:0070363","GO:0000997","GO:0001044","GO:0070361","GO:0070362"],"synonyms":[{"name":"HSP coding strand binding","type":"narrow"},{"name":"HSP non-coding strand binding","type":"narrow"},{"name":"HSPas binding","type":"narrow"},{"name":"HSPs binding","type":"narrow"},{"name":"LSP coding strand binding","type":"narrow"},{"name":"LSP non-coding strand binding","type":"narrow"},{"name":"LSPas binding","type":"narrow"},{"name":"LSPs binding","type":"narrow"},{"name":"mitochondrial RNA polymerase core promoter proximal region sequence-specific DNA binding","type":"related"},{"name":"mitochondrial RNA polymerase core promoter sequence-specific DNA binding","type":"related"},{"name":"mitochondrial RNA polymerase regulatory region DNA binding","type":"related"},{"name":"mitochondrial RNA polymerase regulatory region sequence-specific DNA binding","type":"related"},{"name":"mitochondrial heavy strand promoter anti-sense binding","type":"narrow"},{"name":"mitochondrial heavy strand promoter sense binding","type":"narrow"},{"name":"mitochondrial light strand promoter anti-sense binding","type":"narrow"},{"name":"mitochondrial light strand promoter sense binding","type":"narrow"},{"name":"mitochondrial proximal promoter sequence-specific DNA binding","type":"related"}],"termid":"GO:0001018","terms_by_termid":{"GO:0001018":null}}


id: PBO:0003369
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"U3 snoRNP-associated protein Utp1 (predicted)","termid":"PBO:0003369"}


id: SO:0001531
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A polypeptide region that targets a polypeptide to he cytoplasm.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"peptide_localization_signal","termid":"SO:0001527"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"SO:0000839"}],"interesting_parent_ids":["SO:0000839"],"is_obsolete":false,"name":"nuclear_export_signal","secondary_identifiers":["http://en.wikipedia.org/wiki/Nuclear_export_signal"],"synonyms":[{"name":"NES","type":"exact"},{"name":"nuclear export signal","type":"exact"}],"termid":"SO:0001531"}


id: PBO:0071919
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein S3 pseudogene 4","termid":"PBO:0071919"}


id: GO:0051742
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 2-methyl-6-solanyl-1,4-benzoquinone + S-adenosyl-methionine = 2,3-dimethyl-6-solanyl-1,4-benzoquinone + S-adenosyl-homocysteine.","definition_xrefs":["MetaCyc:RXN-2762"],"direct_ancestors":[{"relation_name":"is_a","term_name":"S-adenosylmethionine-dependent methyltransferase activity","termid":"GO:0008757"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0016741"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016741","GO:0016740"],"is_obsolete":false,"name":"2-methyl-6-solanyl-1,4-benzoquinone methyltransferase activity","secondary_identifiers":["RHEA:37999"],"synonyms":[{"name":"MSBQ methyltransferase activity","type":"exact"}],"termid":"GO:0051742"}


id: PBO:0052075
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"katanin regulatory subunit B1 like 1","termid":"PBO:0052075"}


id: PBO:0053132
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"lipid droplet assembly factor 1","termid":"PBO:0053132"}


id: GO:0005072
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Activity of any of the molecules that transmit the signal from a TGF-beta receptor through the cytoplasm to the nucleus.","definition_xrefs":["GOC:hjd"],"gene_count":0,"genotype_count":0,"name":"obsolete transforming growth factor beta receptor, cytoplasmic mediator activity (obsolete GO:0005072)","synonyms":[{"name":"TGF-beta receptor, cytoplasmic mediator activity","type":"exact"},{"name":"TGFbeta receptor, cytoplasmic mediator activity","type":"exact"}],"termid":"GO:0005072"}


id: GO:0044751
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a human chorionic gonadotropin stimulus.","definition_xrefs":["PMID:21325635"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to human chorionic gonadotropin","termid":"GO:0044752"},{"relation_name":"is_a","term_name":"cellular response to gonadotropin stimulus","termid":"GO:0071371"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cellular response to human chorionic gonadotropin stimulus","synonyms":[{"name":"cellular response to human chorionic gonadotrophin stimulus","type":"exact"}],"termid":"GO:0044751"}


id: PBO:0077291
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transmembrane protein 33","termid":"PBO:0077291"}


id: FYPO:0000011
data:
  {"alleles_by_uniquename":{"SJAG_00118:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_00118","name":"mid2delta","uniquename":"SJAG_00118:allele-1"},"SJAG_00871:allele-1":{"allele_type":"amino_acid_mutation","description":"cut3-T19E","gene_uniquename":"SJAG_00871","name":"cut3-T19E","uniquename":"SJAG_00871:allele-1"},"SJAG_01143:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_01143","name":"mid1delta","uniquename":"SJAG_01143:allele-1"},"SJAG_01330:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_01330","name":"mad2delta","uniquename":"SJAG_01330:allele-1"},"SJAG_01956:allele-1":{"allele_type":"amino_acid_mutation","description":"E405K 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id: PBO:0054134
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1500","termid":"PBO:0054134"}


id: PBO:0061473
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nuclear receptor binding protein 2","termid":"PBO:0061473"}


id: PBO:0076100
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"STX5 divergent transcript","termid":"PBO:0076100"}


id: PBO:0002512
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mRNA export factor Srp2","termid":"PBO:0002512"}


id: GO:0140844
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the transfer of ADP-ribose groups to the glutamate-2 residue of the N-terminal tail of histone H2B (or an equivalent residue).","definition_xrefs":["PMID:27530147"],"direct_ancestors":[{"relation_name":"is_a","term_name":"NAD+-protein-glutamate ADP-ribosyltransferase activity","termid":"GO:0140807"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016757"},{"rel_name":"is_a","termid":"GO:0140096"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003824","GO:0140096","GO:0016740","GO:0003674","GO:0016757"],"is_obsolete":false,"name":"NAD+-histone H2BE2 glutamate ADP-ribosyltransferase activity","synonyms":[{"name":"NAD+-histone H2B-E2 glutamate ADP-ribosyltransferase activity","type":"exact"},{"name":"NAD+-histone-glutamate ADP-ribosyltransferase activity (H2B-E2 specific)","type":"exact"}],"termid":"GO:0140844"}


id: PR:O42973
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPBC20F10.03 gene.","definition_xrefs":["PRO:DNx","UniProtKB:O42973"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized protein C20F10.03 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC20F10.03","synonyms":[{"name":"Spom972h-SPBC20F10.03","type":"exact"}],"termid":"PR:O42973"}


id: FYPO:0004910
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype in which a protein that is localized normally (i.e. indistinguishably from wild type) to discrete regions in the nucleus, visible as foci or dots by microscopy.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal protein localization to nucleus during vegetative growth","termid":"FYPO:0000838"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0001312"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0000257","FYPO:0000138","FYPO:0000002","FYPO:0001320","FYPO:0001312"],"is_obsolete":false,"name":"normal punctate nuclear protein localization","synonyms":[{"name":"normal punctate nuclear protein localisation","type":"exact"},{"name":"normal punctate nuclear protein localization during mitotic cell cycle","type":"related"},{"name":"normal punctate nuclear protein localization during vegetative growth","type":"exact"}],"termid":"FYPO:0004910"}


id: PBO:0082080
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"5' exoribonuclease required for 5' end processing of pre-60S rRNA; binds late pre-60S ribosomes, accompanying them from nucleolus to nuclear periphery; required for cell viability under standard (aerobic) conditions but not under anaerobic conditions; yeast null mutant is complemented by expression of human homolog NOL12","termid":"PBO:0082080"}


id: PBO:0080823
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"xylosyltransferase 1","termid":"PBO:0080823"}


id: PBO:0002827
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PQ loop protein","termid":"PBO:0002827"}


id: GO:0048576
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates, maintains or increases short-day photoperiodism, where the response associated with the photoperiodism is flowering. Flowering is defined by the switch from the vegetative to the reproductive phase.","definition_xrefs":["GOC:jid","ISBN:0697037754","ISBN:0709408862","GOC:pj","ISBN:0582015952"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of post-embryonic development","termid":"GO:0048582"},{"relation_name":"is_a","term_name":"positive regulation of response to stimulus","termid":"GO:0048584"},{"relation_name":"is_a","term_name":"regulation of short-day photoperiodism, flowering","termid":"GO:0048587"},{"relation_name":"is_a","term_name":"positive regulation of reproductive process","termid":"GO:2000243"},{"relation_name":"positively_regulates","term_name":"short-day photoperiodism, flowering","termid":"GO:0048575"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of short-day photoperiodism, flowering","synonyms":[{"name":"activation of short-day photoperiodism, flowering","type":"narrow"},{"name":"stimulation of short-day photoperiodism, flowering","type":"narrow"},{"name":"up regulation of short-day photoperiodism, flowering","type":"exact"},{"name":"up-regulation of short-day photoperiodism, flowering","type":"exact"},{"name":"upregulation of short-day photoperiodism, flowering","type":"exact"}],"termid":"GO:0048576"}


id: GO:0005886
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id: PBO:0088648
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id: GO:0018016
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id: GO:0090102
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id: PBO:0083100
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id: GO:0002177
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id: PATO:0002389
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id: PBO:0070149
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id: PR:Q9P3W6
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id: PBO:0064002
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id: PBO:0079412
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id: PBO:0053425
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id: GO:0072344
data:
  {"annotated_genes":["SJAG_01497","SJAG_02746","SJAG_02096","SJAG_00898","SJAG_03189","SJAG_01074","SJAG_00188"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[70116,75770,77250,87524,98561,111254],"is_not":false,"summary":null,"term":"GO:0072344"},{"annotations":[109617],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0140708"}]},"cv_name":"biological_process","definition":"A process of translational elongation that takes place when a ribosome has stalled during translation, and results in freeing the ribosome from the stalled translation complex.","definition_xrefs":["GOC:mah","PMID:19170872","PMID:20117091","PMID:20185543","PMID:18557701","GOC:jh2"],"direct_ancestors":[{"relation_name":"is_a","term_name":"translational elongation","termid":"GO:0006414"},{"relation_name":"is_a","term_name":"ribosome disassembly","termid":"GO:0032790"}],"gene_count":7,"genes_by_uniquename":{"SJAG_00188":null,"SJAG_00898":null,"SJAG_01074":null,"SJAG_01497":null,"SJAG_02096":null,"SJAG_02746":null,"SJAG_03189":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0010467","GO:0008150"],"is_obsolete":false,"name":"rescue of stalled ribosome","references_by_uniquename":{"GO_REF:0000107":null,"PMID:21873635":null},"termid":"GO:0072344","terms_by_termid":{"GO:0072344":null,"GO:0140708":null}}


id: GO:0070161
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A cell junction that mechanically attaches a cell (and its cytoskeleton) to neighboring cells or to the extracellular matrix.","definition_xrefs":["ISBN:0815332181"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell junction","termid":"GO:0030054"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"anchoring junction","synonyms":[{"name":"anchoring cell junction","type":"exact"}],"termid":"GO:0070161"}


id: GO:0018113
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: L-lysine = D-lysine.","definition_xrefs":["EC:5.1.1.5"],"direct_ancestors":[{"relation_name":"is_a","term_name":"amino-acid racemase activity","termid":"GO:0047661"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016853"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016853"],"is_obsolete":false,"name":"lysine racemase activity","secondary_identifiers":["MetaCyc:LYSINE-RACEMASE-RXN","RHEA:22864"],"termid":"GO:0018113"}


id: PBO:0110336
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ATP6V1F pseudogene 2","termid":"PBO:0110336"}


id: PBO:0080104
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"UTP15 small subunit processome component","termid":"PBO:0080104"}


id: GO:0048936
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Generation of a long process from a neuron whose cell body resides in the peripheral nervous system. The axon carries action potential from the cell body towards target cells.","definition_xrefs":["GOC:dgh"],"direct_ancestors":[{"relation_name":"is_a","term_name":"axonogenesis","termid":"GO:0007409"},{"relation_name":"part_of","term_name":"peripheral nervous system neuron development","termid":"GO:0048935"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"peripheral nervous system neuron axonogenesis","termid":"GO:0048936"}


id: PBO:0056602
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MDM4 regulator of p53","termid":"PBO:0056602"}


id: PBO:0088345
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MFS transporter superfamily","termid":"PBO:0088345"}


id: PBO:0059507
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrially encoded cytochrome c oxidase III","termid":"PBO:0059507"}


id: PBO:0028890
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-inviable_after_spore_germination,_without_cell_division,_with_swollen_elongated_germ_tube","termid":"PBO:0028890"}


id: PBO:0038291
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase feature property types","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"interaction_type","termid":"PBO:0038291"}


id: PBO:0045083
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"delta like non-canonical Notch ligand 2","termid":"PBO:0045083"}


id: PBO:0059813
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MT-CYB pseudogene 39","termid":"PBO:0059813"}


id: GO:0034548
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: N-cyclopropylammeline + H2O = N-cyclopropylammelide + NH3.","definition_xrefs":["UM-BBD_reactionID:r0826"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines","termid":"GO:0016814"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016810"},{"rel_name":"is_a","termid":"GO:0016787"}],"interesting_parent_ids":["GO:0016787","GO:0003824","GO:0003674","GO:0016810"],"is_obsolete":false,"name":"N-cyclopropylammeline deaminase activity","secondary_identifiers":["MetaCyc:RXN-8019"],"termid":"GO:0034548"}


id: PBO:0081588
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein 516","termid":"PBO:0081588"}


id: PBO:0066850
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RN7SK pseudogene 150","termid":"PBO:0066850"}


id: GO:0141034
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which an organism effects a change that disrupts the host actin cytoskeleton by inhibiting host actin from polymerizing. The host is defined as the larger of the organisms involved in a symbiotic interaction.","definition_xrefs":["PMID:30297616","PMID:24253566","PMID:23409096"],"direct_ancestors":[{"relation_name":"is_a","term_name":"symbiont-mediated perturbation of host actin cytoskeleton","termid":"GO:0141027"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"symbiont-mediated perturbation of host actin cytoskeleton via inhibition of actin polymerization","synonyms":[{"name":"perturbation by symbiont of host actin cytoskeleton via inhibition of actin polymerization","type":"exact"}],"termid":"GO:0141034"}


id: GO:0006498
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The covalent attachment of a lipid group to the amino terminus of a protein.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein lipidation","termid":"GO:0006497"},{"relation_name":"is_a","term_name":"N-terminal protein amino acid modification","termid":"GO:0031365"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0042158"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0042158","GO:0008150"],"is_obsolete":false,"name":"N-terminal protein lipidation","termid":"GO:0006498"}


id: PBO:0059958
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MT-ND3 pseudogene 3","termid":"PBO:0059958"}


id: GO:0008788
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: alpha,alpha-trehalose 6-phosphate + H2O = D-glucose + D-glucose 6-phosphate.","definition_xrefs":["EC:3.2.1.93"],"direct_ancestors":[{"relation_name":"is_a","term_name":"trehalase activity","termid":"GO:0015927"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016798"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003824","GO:0016798","GO:0003674","GO:0016787"],"is_obsolete":false,"name":"alpha,alpha-phosphotrehalase activity","secondary_identifiers":["MetaCyc:TRE6PHYDRO-RXN","RHEA:23008"],"synonyms":[{"name":"alpha,alpha-trehalose-6-phosphate phosphoglucohydrolase activity","type":"related"},{"name":"phosphotrehalase activity","type":"related"},{"name":"trehalose-6-phosphate hydrolase activity","type":"related"}],"termid":"GO:0008788"}


id: FYPO:0003215
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which the binding of one protein to another is normal (i.e. indistinguishable from wild type) during a cellular response to hydrogen peroxide. The relevant proteins may include the one encoded by the mutated gene, or may both be encoded by different genes.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal protein-protein interaction","termid":"FYPO:0000703"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0000702"}],"interesting_parent_ids":["FYPO:0000652","FYPO:0000257","FYPO:0000702"],"is_obsolete":false,"name":"normal protein-protein interaction during cellular response to hydrogen peroxide","synonyms":[{"name":"normal protein binding during cellular response to hydrogen peroxide","type":"exact"},{"name":"normal protein-protein interaction during cellular response to H2O2","type":"exact"}],"termid":"FYPO:0003215"}


id: GO:0097432
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which a relatively unspecialized cell acquires specialized features of a hippocampal pyramidal neuron, a pyramidal cell of the hippocampus.","definition_xrefs":["CL:1001571","PMID:19342486","GOC:jc"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pyramidal neuron differentiation","termid":"GO:0021859"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"hippocampal pyramidal neuron differentiation","termid":"GO:0097432"}


id: PBO:0012272
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"20S proteiasome complex subunit alpha 1 (predicted)","termid":"PBO:0012272"}


id: GO:1990196
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The MacAB-TolC complex is a macrolide transporter complex found in E.coli and related gram-negative bacteria. Its transport activity is specific to macrolide compounds containing 14- and 15-membered lactones. It consists of the dimeric inner membrane ATPase MacB, the hexameric, periplasmic membrane fusion protein MacA and the trimeric outer membrane factor TolC.","definition_xrefs":["PMID:19254725","GOC:bhm","PMID:10879525","PMID:18955484"],"direct_ancestors":[{"relation_name":"is_a","term_name":"macrolide transmembrane transporter complex","termid":"GO:1990195"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0032991","GO:0005575"],"is_obsolete":false,"name":"MacAB-TolC complex","synonyms":[{"name":"macrolide transporter MacAB-TolC complex","type":"exact"}],"termid":"GO:1990196"}


id: GO:0009330
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"Complex that possesses DNA topoisomerase II (double strand cut, ATP-hydrolyzing) activity.","definition_xrefs":["WikiPedia:Type_II_topoisomerase","GOC:krc","GOC:bhm","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"catalytic complex","termid":"GO:1902494"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0032991","GO:0005575"],"is_obsolete":false,"name":"DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) complex","termid":"GO:0009330"}


id: GO:1905912
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of calcium ion export across the plasma membrane.","definition_xrefs":["GOC:TermGenie","PMID:22362515","GOC:rph","GOC:BHF_miRNA","GO_REF:0000058","GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of calcium ion transmembrane transport","termid":"GO:1903169"},{"relation_name":"regulates","term_name":"calcium ion export across plasma membrane","termid":"GO:1990034"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0055085"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0055085","GO:0008150","GO:0006810"],"is_obsolete":false,"name":"regulation of calcium ion export across plasma membrane","synonyms":[{"name":"regulation of calcium ion efflux from cell","type":"exact"},{"name":"regulation of calcium ion export from cell","type":"exact"}],"termid":"GO:1905912"}


id: FYPO:0001605
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of a specific substance measured in the cytosol is lower than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased level of substance in cell during vegetative growth","termid":"FYPO:0001329"},{"relation_name":"is_a","term_name":"altered level of substance in cytosol","termid":"FYPO:0001604"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001985","FYPO:0001320"],"is_obsolete":false,"name":"decreased level of substance in cytosol","synonyms":[{"name":"decreased cytosolic level of substance","type":"exact"},{"name":"decreased level of substance in cytosol during mitotic cell cycle","type":"related"},{"name":"decreased level of substance in cytosol during vegetative growth","type":"exact"},{"name":"reduced level of substance in cytosol","type":"exact"}],"termid":"FYPO:0001605"}


id: PBO:0081639
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ZNF566 antisense RNA 1","termid":"PBO:0081639"}


id: GO:1901791
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of 3-(2,3-dihydroxyphenyl)propanoate.","definition_xrefs":["MetaCyc:HCAMHPDEG-PWY","UniPathway:UPA00836","GOC:TermGenie","GOC:yaf","MetaCyc:1.13.11.16-RXN"],"direct_ancestors":[{"relation_name":"is_a","term_name":"catechol-containing compound catabolic process","termid":"GO:0019614"},{"relation_name":"is_a","term_name":"monocarboxylic acid catabolic process","termid":"GO:0072329"},{"relation_name":"is_a","term_name":"3-(2,3-dihydroxyphenyl)propanoate metabolic process","termid":"GO:1901790"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044248"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0044248","GO:0008150","GO:0044281"],"is_obsolete":false,"name":"3-(2,3-dihydroxyphenyl)propanoate catabolic process","synonyms":[{"name":"3-(2,3-dihydroxyphenyl)propanoate breakdown","type":"exact"},{"name":"3-(2,3-dihydroxyphenyl)propanoate catabolism","type":"exact"},{"name":"3-(2,3-dihydroxyphenyl)propanoate degradation","type":"exact"}],"termid":"GO:1901791"}


id: PBO:0078145
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"T cell receptor alpha variable 24","termid":"PBO:0078145"}


id: FYPO:0004702
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the cell does not contain detectable cytoplasmic microtubules.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"microtubules absent from cell","termid":"FYPO:0002004"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"output_of","termid":"FYPO:0000054"},{"rel_name":"output_of","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0002399"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"output_of","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0000054","FYPO:0002399","FYPO:0001985","FYPO:0000002","FYPO:0001320"],"is_obsolete":false,"name":"cytoplasmic microtubules absent from cell","synonyms":[{"name":"absent cytoplasmic microtubules","type":"exact"},{"name":"cytoplasmic microtubules absent from cell during mitotic cell cycle","type":"related"},{"name":"cytoplasmic microtubules absent from cell during vegetative growth","type":"exact"}],"termid":"FYPO:0004702"}


id: GO:0018905
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving dimethyl ether, CH3-O-CH3, the simplest ether. Dimethyl ether, also known wood ether and methyl ether, is a colorless gas that has been used in refrigeration applications.","definition_xrefs":["UM-BBD_pathwayID:dme"],"direct_ancestors":[{"relation_name":"is_a","term_name":"xenobiotic metabolic process","termid":"GO:0006805"},{"relation_name":"is_a","term_name":"ether metabolic process","termid":"GO:0018904"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0044281"],"is_obsolete":false,"name":"dimethyl ether metabolic process","synonyms":[{"name":"dimethyl ether metabolism","type":"exact"},{"name":"methyl ether metabolic process","type":"exact"},{"name":"methyl ether metabolism","type":"exact"}],"termid":"GO:0018905"}


id: PBO:0066993
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RN7SK pseudogene 296","termid":"PBO:0066993"}


id: PR:Q9P6P3
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- ppk15 gene.","definition_xrefs":["UniProtKB:Q9P6P3","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"serine/threonine-protein kinase ppk15 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC823.03","synonyms":[{"name":"Spom972h-ppk15","type":"exact"}],"termid":"PR:Q9P6P3"}


id: SO:0005856
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A primary transcript encoding seryl tRNA (SO:000269).","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"tRNA_primary_transcript","termid":"SO:0000210"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"selenocysteine_tRNA_primary_transcript","synonyms":[{"name":"selenocysteine tRNA primary transcript","type":"exact"}],"termid":"SO:0005856"}


id: PBO:0064966
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PRAME family member 19","termid":"PBO:0064966"}


id: GO:0034420
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The addition of an acetyl group to one or more amino acids in a protein, occurring before the protein has been completely translated and released from the ribosome.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein acetylation","termid":"GO:0006473"},{"relation_name":"is_a","term_name":"co-translational protein modification","termid":"GO:0043686"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"co-translational protein acetylation","synonyms":[{"name":"co-translational protein amino acid acetylation","type":"exact"},{"name":"cotranslational protein amino acid acetylation","type":"exact"}],"termid":"GO:0034420"}


id: GO:0006410
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The cellular synthesis of DNA on a template of RNA.","definition_xrefs":["GOC:jl"],"gene_count":0,"genotype_count":0,"name":"obsolete transcription, RNA-dependent (obsolete GO:0006410)","synonyms":[{"name":"transcription, RNA-dependent","type":"exact"}],"termid":"GO:0006410"}


id: PBO:0046064
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"EIF3J pseudogene 3","termid":"PBO:0046064"}


id: PBO:0084448
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Mannoprotein that exhibits a tight association with the cell wall; required for cell wall stability in the absence of GPI-anchored mannoproteins; has a high serine-threonine content; expression is induced in cell wall mutants; SRL1 has a paralog, SVS1, that arose from the whole genome duplication","termid":"PBO:0084448"}


id: GO:0097747
data:
  {"annotated_genes":["SJAG_01313","SJAG_03578","SJAG_04894","SJAG_04994","SJAG_00458","SJAG_04408","SJAG_02070","SJAG_01765","SJAG_00619","SJAG_16460","SJAG_00731","SJAG_01713","SJAG_03181","SJAG_02653","SJAG_03468","SJAG_04261","SJAG_04106","SJAG_03761","SJAG_03014","SJAG_04030","SJAG_02101","SJAG_03921","SJAG_03035","SJAG_02627","SJAG_01444","SJAG_04934","SJAG_03356","SJAG_00119","SJAG_04161","SJAG_01562","SJAG_02506","SJAG_02600","SJAG_03144","SJAG_00399","SJAG_00637"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[98396,100720,94930],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0003896"},{"annotations":[100279,97029,91461,96990,111912,77741,111612,105090,107624,110829,97983,76455,104594],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0003899"},{"annotations":[109429,73843,74955,70436,75661,71206,74562,75160,75134,76028],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0001054"},{"annotations":[71207,73994,75662,75055,74563,76029,76946,72988,75135],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0001055"},{"annotations":[73844,75136,75663,88647,73046,70437,71447,74564,76030,71208,103778],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0001056"},{"annotations":[95064],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0003968"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1); the synthesis of RNA from ribonucleotide triphosphates in the presence of a nucleic acid template.","definition_xrefs":["GOC:pf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nucleotidyltransferase activity","termid":"GO:0016779"},{"relation_name":"is_a","term_name":"catalytic activity, acting on RNA","termid":"GO:0140098"}],"gene_count":35,"genes_by_uniquename":{"SJAG_00119":null,"SJAG_00399":null,"SJAG_00458":null,"SJAG_00619":null,"SJAG_00637":null,"SJAG_00731":null,"SJAG_01313":null,"SJAG_01444":null,"SJAG_01562":null,"SJAG_01713":null,"SJAG_01765":null,"SJAG_02070":null,"SJAG_02101":null,"SJAG_02506":null,"SJAG_02600":null,"SJAG_02627":null,"SJAG_02653":null,"SJAG_03014":null,"SJAG_03035":null,"SJAG_03144":null,"SJAG_03181":null,"SJAG_03356":null,"SJAG_03468":null,"SJAG_03578":null,"SJAG_03761":null,"SJAG_03921":null,"SJAG_04030":null,"SJAG_04106":null,"SJAG_04161":null,"SJAG_04261":null,"SJAG_04408":null,"SJAG_04894":null,"SJAG_04934":null,"SJAG_04994":null,"SJAG_16460":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016779"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0140098"}],"interesting_parent_ids":["GO:0016740","GO:0140098","GO:0003674","GO:0003824","GO:0016779"],"is_obsolete":false,"name":"RNA polymerase activity","references_by_uniquename":{"GO_REF:0000107":null,"PMID:21873635":null},"termid":"GO:0097747","terms_by_termid":{"GO:0001054":null,"GO:0001055":null,"GO:0001056":null,"GO:0003896":null,"GO:0003899":null,"GO:0003968":null}}


id: PBO:0077049
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"thyroid hormone receptor beta","termid":"PBO:0077049"}


id: GO:0018118
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The modification of peptidyl-cysteine by covalent addition of glutathione to form peptidyl-L-cysteine glutathione disulfide.","definition_xrefs":["RESID:AA0229"],"gene_count":0,"genotype_count":0,"name":"obsolete peptidyl-L-cysteine glutathione disulfide biosynthetic process from peptidyl-cysteine (obsolete GO:0018118)","synonyms":[{"name":"peptidyl-L-cysteine glutathione disulfide anabolism from peptidyl-cysteine","type":"exact"},{"name":"peptidyl-L-cysteine glutathione disulfide formation from peptidyl-cysteine","type":"exact"},{"name":"peptidyl-L-cysteine glutathione disulfide synthesis from peptidyl-cysteine","type":"exact"},{"name":"peptidyl-L-cysteine glutathione disulphide biosynthesis from peptidyl-cysteine","type":"exact"},{"name":"peptidyl-L-cysteine glutathione disulphide biosynthetic process from peptidyl-cysteine","type":"exact"}],"termid":"GO:0018118"}


id: PBO:0026880
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_RITS_complex_assembly","termid":"PBO:0026880"}


id: PBO:0047951
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"fragile site, aphidicolin type, common, fra(18)(q12.2)","termid":"PBO:0047951"}


id: GO:0032848
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate, or extent of a process that reduces the internal pH of a cell.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of cellular pH reduction","termid":"GO:0032847"},{"relation_name":"is_a","term_name":"negative regulation of biological process","termid":"GO:0048519"},{"relation_name":"negatively_regulates","term_name":"intracellular pH reduction","termid":"GO:0051452"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of cellular pH reduction","synonyms":[{"name":"down regulation of cellular pH reduction","type":"exact"},{"name":"down-regulation of cellular pH reduction","type":"exact"},{"name":"downregulation of cellular pH reduction","type":"exact"},{"name":"inhibition of cellular pH reduction","type":"narrow"},{"name":"negative regulation of cell pH reduction","type":"exact"},{"name":"negative regulation of cellular acidification","type":"exact"},{"name":"negative regulation of intracellular acidification","type":"related"},{"name":"negative regulation of intracellular pH reduction","type":"exact"},{"name":"negative regulation of reduction of cellular pH","type":"exact"},{"name":"negative regulation of reduction of pH in cell","type":"exact"}],"termid":"GO:0032848"}


id: GO:0044291
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"Extended zone of intimate apposition between two cells containing one or more types of intercellular junctions, e.g., the intercalated disk of muscle.","definition_xrefs":["NIF_Subcellular:sao1299635018"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell-cell junction","termid":"GO:0005911"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"cell-cell contact zone","synonyms":[{"name":"cell cell contact zone","type":"exact"}],"termid":"GO:0044291"}


id: GO:0052896
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: H2O + O2 + spermidine = 1,3-diaminopropane + 4-aminobutanal + H2O2.","definition_xrefs":["RHEA:25820"],"direct_ancestors":[{"relation_name":"is_a","term_name":"polyamine oxidase activity","termid":"GO:0046592"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016491"],"is_obsolete":false,"name":"spermidine oxidase (propane-1,3-diamine-forming) activity","secondary_identifiers":["EC:1.5.3.14","KEGG_REACTION:R01914","MetaCyc:RXN-10747"],"synonyms":[{"name":"polyamine oxidase (propane-1,3-diamine-forming) activity","type":"broad"},{"name":"spermidine:(acceptor) oxidoreductase activity","type":"broad"}],"termid":"GO:0052896"}


id: FYPO:0002400
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A physical cellular phenotype observed during mitotic interphase in which all detectable microtubules are present in a single bundle.","definition_xrefs":["PomBase:mlr","PomBase:al"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal microtubule cytoskeleton during vegetative growth","termid":"FYPO:0004315"},{"relation_name":"is_a","term_name":"abnormal microtubule bundle","termid":"FYPO:0005558"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0002399"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"output_of","termid":"FYPO:0000054"},{"rel_name":"output_of","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0002399","FYPO:0001985","FYPO:0000002","FYPO:0000054","FYPO:0001320"],"is_obsolete":false,"name":"single microtubule bundle during mitotic interphase","synonyms":[{"name":"single MT bundle during mitotic interphase","type":"exact"},{"name":"single microtubule array during mitotic interphase","type":"exact"}],"termid":"FYPO:0002400"}


id: GO:0003050
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The regulation of blood pressure mediated by the signaling molecule atrial natriuretic peptide.","definition_xrefs":["GOC:mtg_cardio"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of systemic arterial blood pressure by hormone","termid":"GO:0001990"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of systemic arterial blood pressure by atrial natriuretic peptide","synonyms":[{"name":"blood pressure regulation by ANP","type":"related"},{"name":"blood pressure regulation by atrial natriuretic peptide","type":"exact"}],"termid":"GO:0003050"}


id: PBO:0061325
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nuclear pore complex interacting protein family member B3","termid":"PBO:0061325"}


id: PBO:0028564
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_intergenic_meiotic_recombination","termid":"PBO:0028564"}


id: PBO:0084749
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Mitochondrial malic enzyme; catalyzes the oxidative decarboxylation of malate to pyruvate, which is a key intermediate in sugar metabolism and a precursor for synthesis of several amino acids","termid":"PBO:0084749"}


id: FYPO:0005729
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of one or more ferrichromes measured in a cell is higher than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased level of substance in cell during vegetative growth","termid":"FYPO:0001330"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0001320","FYPO:0000002"],"is_obsolete":false,"name":"increased cellular ferrichrome level","synonyms":[{"name":"increased cellular ferrichrome level during mitotic cell cycle","type":"related"},{"name":"increased cellular ferrichrome level during vegetative growth","type":"exact"},{"name":"increased ferrichrome accumulation","type":"related"}],"termid":"FYPO:0005729"}


id: PBO:0062558
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 10 subfamily A member 5","termid":"PBO:0062558"}


id: GO:0048583
data:
  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process that modulates the frequency, rate or extent of a response to a stimulus. 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id: FYPO:0005703
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A  microtubule cytoskeleton organization phenotype observed in the vegetative growth phase of the life cycle in which microtubule polymerization, i.e. the addition of tubulin dimers to the plus end of a microtubule, occurs at a lower rate, or speed, than normal.","definition_xrefs":["GO:0046785","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal rate of microtubule polymerization during vegetative growth","termid":"FYPO:0007955"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000054"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0005447","FYPO:0001985","FYPO:0000054","FYPO:0001320"],"is_obsolete":false,"name":"decreased rate of microtubule polymerization during vegetative growth","synonyms":[{"name":"decreased microtubule plus end growth rate","type":"exact"},{"name":"decreased microtubule polymerization rate","type":"exact"},{"name":"decreased rate of microtubule growth","type":"exact"},{"name":"decreased rate of microtubule polymerisation","type":"exact"},{"name":"decreased rate of microtubule polymerisation during vegetative growth","type":"exact"},{"name":"decreased rate of microtubule polymerization during mitotic cell cycle","type":"related"},{"name":"reduced rate of microtubule polymerization","type":"exact"}],"termid":"FYPO:0005703"}


id: GO:0043423
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a 3-phosphoinositide-dependent protein kinase.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein kinase binding","termid":"GO:0019901"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005515"}],"interesting_parent_ids":["GO:0003674","GO:0005515","GO:0005488"],"is_obsolete":false,"name":"3-phosphoinositide-dependent protein kinase binding","synonyms":[{"name":"phosphatidylinositol-3-phosphate-dependent protein kinase binding","type":"exact"}],"termid":"GO:0043423"}


id: PBO:0051871
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"immunoglobulin superfamily containing leucine rich repeat","termid":"PBO:0051871"}


id: GO:0002606
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate, or extent of dendritic cell antigen processing and presentation.","definition_xrefs":["GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of antigen processing and presentation","termid":"GO:0002579"},{"relation_name":"is_a","term_name":"regulation of dendritic cell antigen processing and presentation","termid":"GO:0002604"},{"relation_name":"positively_regulates","term_name":"dendritic cell antigen processing and presentation","termid":"GO:0002468"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of dendritic cell antigen processing and presentation","synonyms":[{"name":"activation of dendritic cell antigen processing and presentation","type":"narrow"},{"name":"stimulation of dendritic cell antigen processing and presentation","type":"narrow"},{"name":"up regulation of dendritic cell antigen processing and presentation","type":"exact"},{"name":"up-regulation of dendritic cell antigen processing and presentation","type":"exact"},{"name":"upregulation of dendritic cell antigen processing and presentation","type":"exact"}],"termid":"GO:0002606"}


id: GO:1990477
data:
  {"annotated_genes":["SJAG_03939","SJAG_04768","SJAG_02382","SJAG_00701","SJAG_00456"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[83282,86479,104574,107113,107982],"is_not":false,"summary":null,"term":"GO:1990477"}]},"cv_name":"cellular_component","definition":"Protein complex formed by an RNA binding protein Red1, an RNA helicase Mtl1, Red5, Rmn1, Iss10/Pir1, and Ars2/Pir2. This complex is required for the recruitment of the nuclear exosome to Mmi1 nuclear focus. It is likely related to the human CBCN complex. This complex is also known as RNA silencing (NURS) complex.","definition_xrefs":["PMID:32012158","PMID:24210919","PMID:24713849"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nuclear protein-containing complex","termid":"GO:0140513"}],"gene_count":5,"genes_by_uniquename":{"SJAG_00456":null,"SJAG_00701":null,"SJAG_02382":null,"SJAG_03939":null,"SJAG_04768":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005634"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0005634","GO:0005575","GO:0032991"],"is_obsolete":false,"name":"MTREC complex","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["GO:1990345"],"synonyms":[{"name":"Mtl1-Red1 core complex","type":"exact"},{"name":"NURS complex","type":"exact"},{"name":"PAXT complex","type":"exact"}],"termid":"GO:1990477","terms_by_termid":{"GO:1990477":null}}


id: GO:1990968
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process in which a host organism modulates the frequency, rate or extent of a viral gene product binding to RNA.","definition_xrefs":["GOC:PARL","GOC:bf","PMID:25116364"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of molecular function","termid":"GO:0044092"},{"relation_name":"is_a","term_name":"modulation by host of viral molecular function","termid":"GO:0044868"},{"relation_name":"is_a","term_name":"regulation of RNA binding","termid":"GO:1905214"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"modulation by host of RNA binding by virus","synonyms":[{"name":"modulation by host of viral protein:RNA interaction","type":"related"}],"termid":"GO:1990968"}


id: GO:0000045
data:
  {"annotated_genes":["SJAG_04502","SJAG_03100","SJAG_01876","SJAG_05017","SJAG_02699","SJAG_01561","SJAG_00645","SJAG_01274","SJAG_04294","SJAG_01283","SJAG_00114","SJAG_02441","SJAG_01467","SJAG_04655","SJAG_02640","SJAG_04232","SJAG_02414","SJAG_06309","SJAG_00059","SJAG_03851"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[71026,71399,71993,72168,72571,72909,75806,77305,77531,78161,78350,87271,90233,93424,99015,100018,106948,108866],"is_not":false,"summary":null,"term":"GO:0000045"},{"annotations":[85805,105948],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0061739"}]},"cv_name":"biological_process","definition":"The formation of a double membrane-bounded structure, the autophagosome, that occurs when a specialized membrane sac, called the isolation membrane, starts to enclose a portion of the cytoplasm.","definition_xrefs":["GOC:autophagy","PMID:9412464"],"direct_ancestors":[{"relation_name":"is_a","term_name":"organelle assembly","termid":"GO:0070925"},{"relation_name":"is_a","term_name":"autophagosome organization","termid":"GO:1905037"}],"gene_count":20,"genes_by_uniquename":{"SJAG_00059":null,"SJAG_00114":null,"SJAG_00645":null,"SJAG_01274":null,"SJAG_01283":null,"SJAG_01467":null,"SJAG_01561":null,"SJAG_01876":null,"SJAG_02414":null,"SJAG_02441":null,"SJAG_02640":null,"SJAG_02699":null,"SJAG_03100":null,"SJAG_03851":null,"SJAG_04232":null,"SJAG_04294":null,"SJAG_04502":null,"SJAG_04655":null,"SJAG_05017":null,"SJAG_06309":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0044248"},{"rel_name":"part_of","termid":"GO:0044085"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0006914"}],"interesting_parent_ids":["GO:0044085","GO:0008150","GO:0044248","GO:0006914"],"is_obsolete":false,"name":"autophagosome assembly","references_by_uniquename":{"GO_REF:0000107":null,"PMID:21873635":null},"synonyms":[{"name":"autophagosome biosynthesis","type":"exact"},{"name":"autophagosome formation","type":"exact"},{"name":"PAS formation","type":"narrow"},{"name":"autophagic vacuole assembly","type":"exact"},{"name":"autophagic vacuole formation","type":"related"}],"termid":"GO:0000045","terms_by_termid":{"GO:0000045":null,"GO:0061739":null}}


id: PBO:0067963
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 5S ribosomal pseudogene 265","termid":"PBO:0067963"}


id: SO:1000140
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A compound chromosome whereby two arms from different chromosomes are connected through the centromere of one of them.","definition_xrefs":["SO:ke","FB:reference_manual"],"direct_ancestors":[{"relation_name":"is_a","term_name":"compound_chromosome","termid":"SO:1000042"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"hetero_compound_chromosome","synonyms":[{"name":"hetero compound chromosome","type":"exact"},{"name":"hetero-compound chromosome","type":"exact"}],"termid":"SO:1000140"}


id: FYPO:0006692
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"An inviable phenotype observed in the vegetative growth phase of the life cycle in which a cell undergoes septation despite abnormal mitotic sister chromatid separation, producing inviable daughter cells, and in which the septum forms so as to separate the nucleus into two unequal masses, each in one compartment.","definition_xrefs":["PomBase:mah","PomBase:vw"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cut","termid":"FYPO:0000229"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000337"},{"rel_name":"is_a","termid":"FYPO:0000631"},{"rel_name":"part_of","termid":"FYPO:0000337"},{"rel_name":"has_part","termid":"FYPO:0000631"},{"rel_name":"has_part","termid":"FYPO:0000641"},{"rel_name":"has_part","termid":"FYPO:0001985"},{"rel_name":"part_of","termid":"FYPO:0001320"},{"rel_name":"part_of","termid":"FYPO:0000631"},{"rel_name":"has_part","termid":"FYPO:0000032"},{"rel_name":"is_a","termid":"FYPO:0000641"},{"rel_name":"part_of","termid":"FYPO:0005447"},{"rel_name":"has_part","termid":"FYPO:0001320"},{"rel_name":"has_part","termid":"FYPO:0000337"},{"rel_name":"has_part","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"part_of","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000032"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000004"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0000337","FYPO:0005447","FYPO:0000032","FYPO:0000002","FYPO:0000641","FYPO:0000631","FYPO:0000004","FYPO:0001985"],"is_obsolete":false,"name":"cut with septum between unequally sized nuclei","synonyms":[{"name":"cut with septum between unequally sized nuclei during mitotic cell cycle","type":"related"},{"name":"cut with septum between unequally sized nuclei during vegetative growth","type":"exact"},{"name":"cut with unequally sized nuclei, one either side of septum","type":"exact"},{"name":"septation following abnormal mitotic sister chromatid segregation, with septum between unequally sized nuclei","type":"exact"}],"termid":"FYPO:0006692"}


id: FYPO:0005120
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype in which the amount of RNA measured in a cell is greater than normal during the meiotic cell cycle. Total RNA or a specific RNA may be affected.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased RNA level","termid":"FYPO:0001890"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"output_of","termid":"FYPO:0006551"},{"rel_name":"output_of","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0001985","FYPO:0000002","FYPO:0006551"],"is_obsolete":false,"name":"increased RNA level during meiotic cell cycle","synonyms":[{"name":"increased RNA accumulation during meiotic cell cycle","type":"related"},{"name":"increased transcript level during meiotic cell cycle","type":"exact"}],"termid":"FYPO:0005120"}


id: FYPO:0002705
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A phenotype observed in the vegetative growth phase of the life cycle in which cells show increased sensitivity to methionine. Cells stop growing (and may die) at a concentration of methionine that allows wild type cells to grow.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased sensitivity to chemical during vegetative growth","termid":"FYPO:0000127"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000003"},{"rel_name":"is_a","termid":"FYPO:0000139"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0002683"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0002683","FYPO:0000139","FYPO:0000003","FYPO:0001985","FYPO:0005447"],"is_obsolete":false,"name":"sensitive to methionine","synonyms":[{"name":"hypersensitive to methionine","type":"exact"},{"name":"methionine inhibited","type":"exact"},{"name":"sensitive to methionine during mitotic cell cycle","type":"related"},{"name":"sensitive to methionine during vegetative growth","type":"exact"}],"termid":"FYPO:0002705"}


id: PBO:0000384
data:
  {"annotation_feature_type":"gene","cv_name":"pathway","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Ras1-Scd","termid":"PBO:0000384"}


id: PBO:0054378
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1774","termid":"PBO:0054378"}


id: GO:0150051
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The network of the Golgi apparatus structures located within the postsynapse.","definition_xrefs":["GOC:aruk","GOC:bc","PMID:23838184"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Golgi apparatus","termid":"GO:0005794"},{"relation_name":"part_of","term_name":"postsynapse","termid":"GO:0098794"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"is_a","termid":"GO:0005794"}],"interesting_parent_ids":["GO:0005737","GO:0005794","GO:0005575"],"is_obsolete":false,"name":"postsynaptic Golgi apparatus","synonyms":[{"name":"Golgi outpost","type":"related"}],"termid":"GO:0150051"}


id: FYPO:0005313
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which maintenance of mitotic sister chromatid cohesion is normal (i.e. indistinguishable from wild type). Maintenance of mitotic sister chromatid cohesion is the process in which the association between sister chromatids of a replicated chromosome is maintained as chromosomes condense, attach to the mitotic spindle, and congress to the metaphase plate.","definition_xrefs":["GO:0034088","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal cellular process during vegetative growth","termid":"FYPO:0001319"},{"relation_name":"is_a","term_name":"normal cellular component organization","termid":"FYPO:0006003"},{"relation_name":"is_a","term_name":"normal cell cycle process","termid":"FYPO:0006915"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001312"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000257"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001320","FYPO:0001312","FYPO:0000257"],"is_obsolete":false,"name":"normal maintenance of mitotic sister chromatid cohesion","synonyms":[{"name":"normal maintenance of mitotic chromosome cohesion","type":"exact"},{"name":"normal maintenance of mitotic sister chromatid cohesion during vegetative growth","type":"exact"},{"name":"normal maintenance of sister chromatid cohesion during mitotic cell cycle","type":"related"}],"termid":"FYPO:0005313"}


id: PBO:0075045
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nucleolar RNA, C/D box 116-8","termid":"PBO:0075045"}


id: PBO:0053705
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 907","termid":"PBO:0053705"}


id: PBO:0079320
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"testis-specific transcript, Y-linked 10","termid":"PBO:0079320"}


id: FYPO:0002089
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which exocytosis is abnormal. Exocytosis is the release of intracellular molecules (e.g. hormones, matrix proteins) contained within a membrane-bounded vesicle by fusion of the vesicle with the plasma membrane of a cell. A phenotype may affect exocytosis of all cargoes, or of specific cargo such as a particular protein.","definition_xrefs":["PomBase:mah","GO:0006887"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal vesicle-mediated transport during vegetative growth","termid":"FYPO:0000213"},{"relation_name":"is_a","term_name":"abnormal exocytosis","termid":"FYPO:0007873"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0005447","FYPO:0001985","FYPO:0000138","FYPO:0001320"],"is_obsolete":false,"name":"abnormal exocytosis during vegetative growth","synonyms":[{"name":"abnormal exocytosis during mitotic cell cycle","type":"related"},{"name":"exocytosis defects during vegetative growth","type":"exact"}],"termid":"FYPO:0002089"}


id: GO:0042185
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of m-xylene, 1,3-dimethylbenzene, a colorless, liquid aromatic hydrocarbon.","definition_xrefs":["GOC:jl","GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"m-xylene metabolic process","termid":"GO:0018949"},{"relation_name":"is_a","term_name":"xylene catabolic process","termid":"GO:0042184"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044248"}],"interesting_parent_ids":["GO:0044248","GO:0008150"],"is_obsolete":false,"name":"m-xylene catabolic process","secondary_identifiers":["MetaCyc:PWY-142"],"synonyms":[{"name":"m-xylene breakdown","type":"exact"},{"name":"m-xylene catabolism","type":"exact"},{"name":"m-xylene degradation","type":"exact"},{"name":"meta-xylene catabolic process","type":"exact"},{"name":"meta-xylene catabolism","type":"exact"}],"termid":"GO:0042185"}


id: PBO:0090982
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"serine/threonine protein phosphatase PP1 regulatory subunit Sds22","termid":"PBO:0090982"}


id: PR:Q9Y7Q0
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPCC191.06 gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q9Y7Q0"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized protein C191.06 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC191.06","synonyms":[{"name":"Spom972h-SPCC191.06","type":"exact"}],"termid":"PR:Q9Y7Q0"}


id: MOD:01945
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that forms (2-aminosuccinimidyl)-3-sulfanylpropanoic acid by crosslinking either an aspartic acid residue or an asparagine residue with the following cysteine residue.","definition_xrefs":["PubMed:18688235"],"direct_ancestors":[{"relation_name":"is_a","term_name":"2-aminosuccinimide ring crosslinked residues","termid":"MOD:01944"},{"relation_name":"is_a","term_name":"crosslinked L-cysteine residue","termid":"MOD:02044"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"2-(2-aminosuccinimidyl)-3-sulfanylpropanoic acid","termid":"MOD:01945"}


id: PBO:0082140
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Activator of Cbk1p kinase; component of the RAM signaling network that regulates cellular polarity and morphogenesis; activation of Cbk1p facilitates the Ace2p-dependent daughter cell-specific transcription of genes involved in cell separation; similar to Mob1p","termid":"PBO:0082140"}


id: GO:0018782
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: cis-3-chloroacrylic acid + H2O = H+ + HCl + malonate semialdehyde.","definition_xrefs":["UM-BBD_reactionID:r0688"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hydrolase activity, acting on acid halide bonds, in C-halide compounds","termid":"GO:0019120"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016787","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"cis-chloroacrylic acid dehalogenase activity","termid":"GO:0018782"}


id: PBO:0088731
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glutathione-specific gamma-glutamylcyclotransferase Ggg1","termid":"PBO:0088731"}


id: GO:0098872
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"A G protein-coupled neurotransmitter receptor activity occurring in the postsynaptic membrane, that is involved in regulating the cytosolic concentration of calcium ions in the postsynapse.","definition_xrefs":["GOC:dos"],"direct_ancestors":[{"relation_name":"is_a","term_name":"G protein-coupled neurotransmitter receptor activity","termid":"GO:0099528"},{"relation_name":"is_a","term_name":"neurotransmitter receptor activity involved in regulation of postsynaptic cytosolic calcium ion concentration","termid":"GO:0099583"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0038023"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0038023","GO:0003674"],"is_obsolete":false,"name":"G protein-coupled neurotransmitter receptor activity involved in regulation of postsynaptic cytosolic calcium ion concentration","synonyms":[{"name":"G-protein coupled neurotransmitter receptor activity involved in regulation of postsynaptic cytosolic calcium ion concentration","type":"exact"},{"name":"G-protein coupled neurotransmitter receptor activity involved in regulation of postsynaptic cytosolic calcium levels","type":"exact"}],"termid":"GO:0098872"}


id: PBO:0080762
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"X-linked inhibitor of apoptosis pseudogene 1","termid":"PBO:0080762"}


id: PBO:0082826
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Conserved phosphatase acting as a metabolite repair enzyme; shows specific dephosphorylating activity on two side-products of central carbohydrate metabolism, 2-phosphoglycolate and 4-phosphoerythronate; alkaline phosphatase specific for p-nitrophenyl phosphate; also has protein phosphatase activity; human ortholog PGP shows similar substrate specificity, deletion causes similar metabolite accumulation phenotypes, suggesting conserved role in eliminating glycolytic byproducts","termid":"PBO:0082826"}


id: PBO:0031878
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ubiquitinated protein Uhp1","termid":"PBO:0031878"}


id: PBO:0053126
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"LCORL pseudogene 1","termid":"PBO:0053126"}


id: PATO:0002173
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"An alignment quality inhering in a bearer by virtue of the bearer's being in a improper spatial positioning towards an additional entity.","definition_xrefs":["PATOC:GVG"],"direct_ancestors":[{"relation_name":"is_a","term_name":"misaligned with","termid":"PATO:0001654"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"misaligned towards","termid":"PATO:0002173"}


id: GO:0097462
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"Elongated neuronal process, often with side branches and more than one branching point, described in brains of patients with Parkinson's disease. Lewy neurites stain positively for ubiquitin in brainstem and forebrain regions affected in Parkinson's disease.","definition_xrefs":["NIF_Subcellular:sao601362597"],"direct_ancestors":[{"relation_name":"is_a","term_name":"neuron projection","termid":"GO:0043005"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"Lewy neurite","termid":"GO:0097462"}


id: PBO:0041186
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"butyrophilin like 10, pseudogene","termid":"PBO:0041186"}


id: PBO:0051047
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"immunoglobulin heavy diversity 1-26","termid":"PBO:0051047"}


id: MOD:01646
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively removes or replaces an L-serine.","definition_xrefs":["PubMed:18688235"],"direct_ancestors":[{"relation_name":"is_a","term_name":"modified L-serine residue","termid":"MOD:00916"},{"relation_name":"is_a","term_name":"natural, standard, encoded residue removal","termid":"MOD:01651"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"L-serine removal","termid":"MOD:01646"}


id: GO:0046209
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving nitric oxide, nitrogen monoxide (NO), a colorless gas only slightly soluble in water.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"reactive nitrogen species metabolic process","termid":"GO:2001057"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"nitric oxide metabolic process","synonyms":[{"name":"nitric oxide metabolism","type":"exact"}],"termid":"GO:0046209"}


id: PR:Q10351
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- gpi17 gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q10351"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"GPI transamidase component PIG-S homolog (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC1F12.09","synonyms":[{"name":"Spom972h-gpi17","type":"exact"}],"termid":"PR:Q10351"}


id: PBO:0090398
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"serine/threonine protein phosphatase PP2C catalytic subunit Ptc3","termid":"PBO:0090398"}


id: PBO:0036510
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial oxidoreductase-like protein, humsn OXLD1 ortholog","termid":"PBO:0036510"}


id: GO:0015234
data:
  {"annotated_genes":["SJAG_03652","SJAG_00835","SJAG_04673","SJAG_02962"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[85870,85871],"is_not":false,"summary":null,"term":"GO:0015234"},{"annotations":[96161],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0034216"},{"annotations":[99072],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0090422"}]},"cv_name":"molecular_function","definition":"Enables the transfer of thiamine from one side of a membrane to the other. Thiamine is vitamin B1, a water soluble vitamin present in fresh vegetables and meats, especially liver.","definition_xrefs":["GOC:ai","ISBN:0815340729","GOC:mtg_transport"],"direct_ancestors":[{"relation_name":"is_a","term_name":"organic cation transmembrane transporter activity","termid":"GO:0015101"},{"relation_name":"is_a","term_name":"vitamin transmembrane transporter activity","termid":"GO:0090482"},{"relation_name":"is_a","term_name":"azole transmembrane transporter activity","termid":"GO:1901474"},{"relation_name":"is_a","term_name":"sulfur compound transmembrane transporter activity","termid":"GO:1901682"}],"gene_count":4,"genes_by_uniquename":{"SJAG_00835":null,"SJAG_02962":null,"SJAG_03652":null,"SJAG_04673":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0005215","GO:0022857","GO:0003674"],"is_obsolete":false,"name":"thiamine transmembrane transporter activity","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["GO:0015403","Reactome:R-HSA-199626","RHEA:34919","GO:0015402"],"synonyms":[{"name":"thiamin permease activity","type":"exact"},{"name":"thiamin transmembrane transporter activity","type":"exact"},{"name":"thiamin uptake transporter activity","type":"related"},{"name":"thiamine permease activity","type":"exact"},{"name":"thiamine uptake transmembrane transporter activity","type":"related"},{"name":"vitamin B1 transporter activity","type":"exact"}],"termid":"GO:0015234","terms_by_termid":{"GO:0015234":null,"GO:0034216":null,"GO:0090422":null}}


id: PBO:0063131
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"poly(ADP-ribose) polymerase family member 16","termid":"PBO:0063131"}


id: FYPO:0004680
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of polyadenylated 5.8S rRNA measured in a cell is normal (i.e. indistinguishable from wild type).","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal rRNA or precursor level","termid":"FYPO:0006000"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0001312"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0001312","FYPO:0001320","FYPO:0000002","FYPO:0000257"],"is_obsolete":false,"name":"normal polyadenylated 5.8S rRNA level","synonyms":[{"name":"normal polyadenylated 5.8S rRNA accumulation","type":"related"},{"name":"normal polyadenylated 5.8S rRNA level during mitotic cell cycle","type":"related"},{"name":"normal polyadenylated 5.8S rRNA level during vegetative growth","type":"exact"},{"name":"normal polyadenylated 5.8S rRNA transcript level","type":"exact"}],"termid":"FYPO:0004680"}


id: PBO:0018078
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"helper of TIM Hot15 (predicted)","termid":"PBO:0018078"}


id: PBO:0082322
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ATPase of the 19S regulatory particle of the 26S proteasome; one of ATPases of the regulatory particle; involved in the degradation of ubiquitinated substrates; substrate of N-acetyltransferase B","termid":"PBO:0082322"}


id: PBO:0055322
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2750","termid":"PBO:0055322"}


id: GO:2000471
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of hematopoietic stem cell migration.","definition_xrefs":["GOC:obol"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of cell migration","termid":"GO:0030334"},{"relation_name":"regulates","term_name":"hematopoietic stem cell migration","termid":"GO:0035701"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of hematopoietic stem cell migration","synonyms":[{"name":"regulation of hemopoietic stem cell migration","type":"exact"}],"termid":"GO:2000471"}


id: PBO:0087318
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"S-methylmethionine-homocysteine methyltransferase; functions along with Sam4p in the conversion of S-adenosylmethionine (AdoMet) to methionine to control the methionine/AdoMet ratio","termid":"PBO:0087318"}


id: PBO:0006188
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-has_downstream_target","termid":"PBO:0006188"}


id: PBO:0089797
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"human CREG1 ortholog","termid":"PBO:0089797"}


id: GO:1902594
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. A nuclear import which involves another organism.","definition_xrefs":["GOC:TermGenie","GO_REF:0000089","GOC:jl"],"gene_count":0,"genotype_count":0,"name":"obsolete multi-organism nuclear import (obsolete GO:1902594)","synonyms":[{"name":"multi organism nuclear import","type":"exact"}],"termid":"GO:1902594"}


id: PBO:0047238
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"family with sequence similarity 230 member J","termid":"PBO:0047238"}


id: PBO:0049932
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"hematopoietically expressed homeobox","termid":"PBO:0049932"}


id: GO:0021524
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which neuroepithelial cells in the neural tube acquire specialized structural and/or functional features of visceral motor neurons. Visceral motor neurons innervate glandular targets and are responsible for transmission of motor impulses from the brain to the periphery. Differentiation includes the processes involved in commitment of a cell to a specific fate.","definition_xrefs":["GO_REF:0000021","GOC:dph","GOC:jid","GOC:dgh","PMID:11262869","GOC:cls"],"direct_ancestors":[{"relation_name":"is_a","term_name":"spinal cord motor neuron differentiation","termid":"GO:0021522"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"visceral motor neuron differentiation","termid":"GO:0021524"}


id: PBO:0081573
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein 500","termid":"PBO:0081573"}


id: PR:Q10358
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein RER1 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PANTHER:PTHR10743:SF0","PRO:DNx","OMA:SCHPO02094"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protein rer1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC22E12.05c","secondary_identifiers":["UniProtKB:Q10358"],"synonyms":[{"name":"Spom972h-RER1","type":"exact"},{"name":"retention of ER proteins 1 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:Q10358"}


id: PBO:0078697
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-Leu (AAG) 8-1","termid":"PBO:0078697"}


id: PBO:0068216
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 5S ribosomal pseudogene 523","termid":"PBO:0068216"}


id: PBO:0057750
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 1909","termid":"PBO:0057750"}


id: PBO:0005833
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CSN-associated deubiquitinating enzyme Ubp12","termid":"PBO:0005833"}


id: PBO:0031254
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_mitotic_spindle_assembly","termid":"PBO:0031254"}


id: PBO:0053728
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 942","termid":"PBO:0053728"}


id: PBO:0055250
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2677","termid":"PBO:0055250"}


id: GO:0004234
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the hydrolysis of soluble and insoluble elastin. Specific cleavages are also produced at Ala14-Leu15 and Tyr16-Leu17 in the B chain of insulin.","definition_xrefs":["EC:3.4.24.65"],"gene_count":0,"genotype_count":0,"name":"obsolete macrophage elastase activity (obsolete GO:0004234)","secondary_identifiers":["MetaCyc:3.4.24.65-RXN"],"synonyms":[{"name":"MMP-12","type":"exact"},{"name":"human macrophage metalloelastase (HME)","type":"related"},{"name":"macrophage elastase activity","type":"exact"},{"name":"matrix metalloproteinase 12 activity","type":"related"},{"name":"metalloelastase activity","type":"related"},{"name":"metalloesterase activity","type":"exact"}],"termid":"GO:0004234"}


id: PBO:0080730
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"WWC2 antisense RNA 2","termid":"PBO:0080730"}


id: GO:0030329
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving prenylcysteine, 3-methyl-2-buten-1-yl-cysteine, a derivative of the amino acid cysteine formed by the covalent addition of a prenyl residue.","definition_xrefs":["PMID:16627894","GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular modified amino acid metabolic process","termid":"GO:0006575"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"prenylcysteine metabolic process","synonyms":[{"name":"prenylcysteine metabolism","type":"exact"}],"termid":"GO:0030329"}


id: SO:0000625
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A regulatory region which upon binding of transcription factors, suppress the transcription of the gene or genes they control.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cis_regulatory_module","termid":"SO:0000727"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"silencer","secondary_identifiers":["http://en.wikipedia.org/wiki/Silencer_(DNA)"],"synonyms":[{"name":"INSDC_feature:regulatory","type":"broad"},{"name":"INSDC_qualifier:silencer","type":"exact"}],"termid":"SO:0000625"}


id: PBO:0069698
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 977, pseudogene","termid":"PBO:0069698"}


id: PBO:0066500
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"raftlin, lipid raft linker 1 pseudogene 1","termid":"PBO:0066500"}


id: PBO:0026929
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_protein_level_in_anaphase-promoting_complex","termid":"PBO:0026929"}


id: PBO:0048526
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"gem nuclear organelle associated protein 2 pseudogene 1","termid":"PBO:0048526"}


id: PBO:0004370
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cytoskeletal protein Syp1 (predicted)","termid":"PBO:0004370"}


id: GO:0071549
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a dexamethasone stimulus.","definition_xrefs":["GOC:mah","GOC:yaf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular response to glucocorticoid stimulus","termid":"GO:0071385"},{"relation_name":"is_a","term_name":"response to dexamethasone","termid":"GO:0071548"},{"relation_name":"is_a","term_name":"cellular response to ketone","termid":"GO:1901655"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cellular response to dexamethasone stimulus","termid":"GO:0071549"}


id: GO:0075527
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process by which bases in viral mRNA are chemically altered during viral transcription. This is usually the incorporation of 1 - 6 additional nucleotides, which shifts the reading frame, allowing the generation of different protein products or through a specific nucleotide change that eliminates the termination codon.","definition_xrefs":["VZ:857","PMID:1629949"],"direct_ancestors":[{"relation_name":"is_a","term_name":"viral process","termid":"GO:0016032"},{"relation_name":"part_of","term_name":"viral transcription","termid":"GO:0019083"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"viral RNA editing","synonyms":[{"name":"RNA editing involved in viral mRNA transcription","type":"exact"}],"termid":"GO:0075527"}


id: GO:0048839
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of the inner ear over time, from its formation to the mature structure.","definition_xrefs":["GOC:sr"],"direct_ancestors":[{"relation_name":"is_a","term_name":"anatomical structure development","termid":"GO:0048856"},{"relation_name":"part_of","term_name":"ear development","termid":"GO:0043583"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"inner ear development","termid":"GO:0048839"}


id: PBO:0071642
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L36 pseudogene 6","termid":"PBO:0071642"}


id: PBO:0065030
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PRDX5 pseudogene 1","termid":"PBO:0065030"}


id: GO:0038185
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The series of molecular signals initiated by a bile acid binding to an receptor located within a cell, and ending with the regulation of a downstream cellular process, e.g. transcription.","definition_xrefs":["PMID:10334992","GOC:bf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"intracellular receptor signaling pathway","termid":"GO:0030522"},{"relation_name":"is_a","term_name":"bile acid signaling pathway","termid":"GO:0038183"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"intracellular bile acid receptor signaling pathway","synonyms":[{"name":"nuclear bile acid receptor signaling pathway","type":"related"}],"termid":"GO:0038185"}


id: PBO:0047844
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"FPGT-TNNI3K readthrough","termid":"PBO:0047844"}


id: GO:0002575
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The movement of a basophil in response to an external stimulus.","definition_xrefs":["GOC:add","PMID:11292027"],"direct_ancestors":[{"relation_name":"is_a","term_name":"granulocyte chemotaxis","termid":"GO:0071621"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"basophil chemotaxis","termid":"GO:0002575"}


id: PBO:0061066
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NFKB activating protein","termid":"PBO:0061066"}


id: GO:0008635
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that initiates the activity of the inactive enzyme cysteine-type endopeptidase in the context of an apoptotic process and is mediated by cytochrome c.","definition_xrefs":["GOC:jl","GOC:mtg_apoptosis","GOC:tb","Wikipedia:Caspase","GOC:dph","PMID:14744432"],"direct_ancestors":[{"relation_name":"is_a","term_name":"activation of cysteine-type endopeptidase activity involved in apoptotic process","termid":"GO:0006919"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"activation of cysteine-type endopeptidase activity involved in apoptotic process by cytochrome c","synonyms":[{"name":"activation of caspase activity by cytochrome c","type":"narrow"},{"name":"caspase activation via cytochrome c","type":"exact"}],"termid":"GO:0008635"}


id: GO:0031767
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a gastric inhibitory polypeptide receptor.","definition_xrefs":["GOC:mah","GOC:nln"],"direct_ancestors":[{"relation_name":"is_a","term_name":"G protein-coupled receptor binding","termid":"GO:0001664"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0005515"}],"interesting_parent_ids":["GO:0003674","GO:0005515","GO:0005488"],"is_obsolete":false,"name":"gastric inhibitory polypeptide receptor binding","synonyms":[{"name":"gastric inhibitory polypeptide receptor ligand","type":"narrow"}],"termid":"GO:0031767"}


id: PBO:0039202
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"aldo-keto reductase family 1 member B1 pseudogene 5","termid":"PBO:0039202"}


id: GO:0038165
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The series of molecular signals initiated by oncostatin-M (OSM) binding to its receptor on the surface of a target cell, and ending with the regulation of a downstream cellular process, e.g. transcription. OSM can signal via at least two different receptors (a specific receptor and a LIF receptor) to activate different downstream signal transduction pathways.","definition_xrefs":["PMID:10579456","GOC:signaling","PMID:12811586","GOC:nhn"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cytokine-mediated signaling pathway","termid":"GO:0019221"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"oncostatin-M-mediated signaling pathway","synonyms":[{"name":"OSM signaling pathway","type":"exact"},{"name":"oncostatin-M signaling pathway","type":"exact"}],"termid":"GO:0038165"}


id: MOD:01185
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-aspartic acid residue to L-asparagine.","definition_xrefs":["RESID:AA0003#ASP","PubMed:17962566"],"direct_ancestors":[{"relation_name":"is_a","term_name":"L-asparagine residue","termid":"MOD:00012"},{"relation_name":"is_a","term_name":"amidated residue","termid":"MOD:00674"},{"relation_name":"is_a","term_name":"modified L-aspartic acid residue","termid":"MOD:00904"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"4-amidated L-aspartic acid","synonyms":[{"name":"(2S)-2-amino-4-butanediamic acid","type":"exact"},{"name":"2,4-bis(azanyl)-4-oxobutanoic acid","type":"exact"},{"name":"2,4-diamino-4-oxobutanoic acid","type":"exact"},{"name":"2-amino-3-carbamoylpropanoic acid","type":"exact"},{"name":"2-amino-4-butanediamic acid","type":"exact"},{"name":"2-aminosuccinamic acid","type":"exact"},{"name":"2-aminosuccinic acid 4-amide","type":"exact"},{"name":"4NAsp","type":"exact"},{"name":"L-asparagine","type":"exact"},{"name":"MOD_RES Amidated aspartic acid","type":"exact"},{"name":"alpha-amino-beta-carbamylpropionic acid","type":"exact"},{"name":"alpha-aminosuccinamic acid","type":"exact"},{"name":"aspartic acid 4-amide","type":"exact"},{"name":"aspartic acid beta-amide","type":"exact"},{"name":"beta-asparagine","type":"exact"}],"termid":"MOD:01185"}


id: GO:0070405
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to ammonium ions (NH4+).","definition_xrefs":["CHEBI:28938","GOC:ecd"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cation binding","termid":"GO:0043169"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005488"}],"interesting_parent_ids":["GO:0003674","GO:0005488"],"is_obsolete":false,"name":"ammonium ion binding","synonyms":[{"name":"ammonium binding","type":"related"}],"termid":"GO:0070405"}


id: GO:0019626
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of a short-chain fatty acid. A short-chain fatty acid has an aliphatic tail containing fewer than 6 carbons.","definition_xrefs":["ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"fatty acid catabolic process","termid":"GO:0009062"},{"relation_name":"is_a","term_name":"short-chain fatty acid metabolic process","termid":"GO:0046459"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006629"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0044248"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006629","GO:0044281","GO:0044248","GO:0008150"],"is_obsolete":false,"name":"short-chain fatty acid catabolic process","secondary_identifiers":["MetaCyc:ACETOACETATE-DEG-PWY"],"synonyms":[{"name":"short-chain fatty acid breakdown","type":"exact"},{"name":"short-chain fatty acid catabolism","type":"exact"},{"name":"short-chain fatty acid degradation","type":"exact"}],"termid":"GO:0019626"}


id: FYPO:0001100
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A phenotype in which vegetative cell population growth is normal (i.e. indistinguishable from wild type) in a medium containing Gentian violet (also known as crystal violet).","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal vegetative cell population growth","termid":"FYPO:0001357"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0000003"},{"rel_name":"is_a","termid":"FYPO:0002058"},{"rel_name":"is_a","termid":"FYPO:0000139"},{"rel_name":"is_a","termid":"FYPO:0002057"},{"rel_name":"is_a","termid":"FYPO:0002060"}],"interesting_parent_ids":["FYPO:0000257","FYPO:0002058","FYPO:0002060","FYPO:0000139","FYPO:0000003","FYPO:0002057"],"is_obsolete":false,"name":"normal growth on Gentian violet","synonyms":[{"name":"normal cell population growth in presence of Gentian violet","type":"exact"},{"name":"normal cell population growth on Gentian violet","type":"exact"},{"name":"normal cell population growth on crystal violet","type":"exact"},{"name":"normal cell population growth on {4-[Bis-(4-dimethylamino-phenyl)-methylene]-cyclohexa-2,5-dienylidene}-dimethyl-ammonium chloride","type":"exact"},{"name":"normal vegetative cell population growth on Gentian violet","type":"exact"}],"termid":"FYPO:0001100"}


id: FYPO:0006446
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of any unspliced or incompletely spliced mRNA precursor measured in the mitochondrion is higher than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased pre-mRNA level","termid":"FYPO:0001908"},{"relation_name":"is_a","term_name":"increased mitochondrial RNA level","termid":"FYPO:0003424"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0006551"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0001985","FYPO:0001320","FYPO:0006551","FYPO:0000002"],"is_obsolete":false,"name":"increased mitochondrial pre-mRNA level","synonyms":[{"name":"accumulation of mitochondrial pre-mRNA transcripts","type":"related"},{"name":"increased mitochondrial pre-mRNA level during mitotic cell cycle","type":"related"},{"name":"increased mitochondrial pre-mRNA level during vegetative growth","type":"exact"},{"name":"increased mitochondrial pre-mRNA transcript level","type":"exact"},{"name":"increased mitochondrial re-mRNA accumulation","type":"related"},{"name":"increased pre-mRNA level in mitochondrion","type":"exact"}],"termid":"FYPO:0006446"}


id: PBO:0038464
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ABCA3 pseudogene 1","termid":"PBO:0038464"}


id: GO:0012507
data:
  {"annotated_genes":["SJAG_01939","SJAG_05345","SJAG_00557","SJAG_04513","SJAG_04023","SJAG_01633","SJAG_00072","SJAG_00284","SJAG_05344","SJAG_03907","SJAG_03558","SJAG_00906","SJAG_02349","SJAG_03153","SJAG_02539"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[70646,73537,75420,96565,109405],"is_not":false,"summary":null,"term":"GO:0012507"},{"annotations":[75482,91096,77301,74528,72890,74907,75869,71466,71519,74175],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0030127"}]},"cv_name":"cellular_component","definition":"The lipid bilayer surrounding a vesicle transporting substances from the endoplasmic reticulum to the Golgi.","definition_xrefs":["GOC:tb","GOC:ascb_2009","GOC:ai","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"transport vesicle membrane","termid":"GO:0030658"},{"relation_name":"is_a","term_name":"coated vesicle membrane","termid":"GO:0030662"},{"relation_name":"part_of","term_name":"COPII-coated ER to Golgi transport vesicle","termid":"GO:0030134"}],"gene_count":15,"genes_by_uniquename":{"SJAG_00072":null,"SJAG_00284":null,"SJAG_00557":null,"SJAG_00906":null,"SJAG_01633":null,"SJAG_01939":null,"SJAG_02349":null,"SJAG_02539":null,"SJAG_03153":null,"SJAG_03558":null,"SJAG_03907":null,"SJAG_04023":null,"SJAG_04513":null,"SJAG_05344":null,"SJAG_05345":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"part_of","termid":"GO:0031410"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575","GO:0005737","GO:0031410"],"is_obsolete":false,"name":"ER to Golgi transport vesicle membrane","references_by_uniquename":{"GO_REF:0000107":null,"PMID:21873635":null},"secondary_identifiers":["GO:0030664"],"synonyms":[{"name":"COPII coated vesicle membrane","type":"exact"},{"name":"ER to Golgi constitutive secretory pathway transport vesicle membrane","type":"exact"},{"name":"ER-Golgi transport vesicle membrane","type":"exact"},{"name":"endoplasmic reticulum to Golgi transport vesicle membrane","type":"exact"},{"name":"endoplasmic reticulum-Golgi transport vesicle membrane","type":"exact"}],"termid":"GO:0012507","terms_by_termid":{"GO:0012507":null,"GO:0030127":null}}


id: GO:1990679
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The modification of histone H4 by the removal of an acetyl group from lysine at position 12 of the histone.","definition_xrefs":["PMID:17446861"],"gene_count":0,"genotype_count":0,"name":"obsolete histone H4-K12 deacetylation (obsolete GO:1990679)","termid":"GO:1990679"}


id: PBO:0047077
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"family with sequence similarity 133 member F, pseudogene","termid":"PBO:0047077"}


id: PBO:0073886
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"solute carrier family 12 member 3","termid":"PBO:0073886"}


id: PBO:0017498
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zn(2)-C6 fungal-type DNA-binding transcription factor, truncated","termid":"PBO:0017498"}


id: GO:0141091
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The series of molecular signals initiated by an extracellular ligand binding to a member of the transforming growth factor receptor superfamily, and ending with the regulation of a downstream cellular process, e.g. transcription.","definition_xrefs":["PMID:28096268","PMID:22651914"],"direct_ancestors":[{"relation_name":"is_a","term_name":"transmembrane receptor protein serine/threonine kinase signaling pathway","termid":"GO:0007178"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"transforming growth factor beta receptor superfamily signaling pathway","synonyms":[{"name":"TGF-beta receptor superfamily signaling pathway","type":"exact"},{"name":"TGF-beta receptor superfamily signalling pathway","type":"exact"},{"name":"TGFbeta receptor superfamily signaling pathway","type":"exact"},{"name":"TGFbeta receptor superfamily signalling pathway","type":"exact"},{"name":"transforming growth factor beta receptor superfamily signalling pathway","type":"exact"}],"termid":"GO:0141091"}


id: PBO:0054581
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1983","termid":"PBO:0054581"}


id: PBO:0000765
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Moeb/ThiF domain","termid":"PBO:0000765"}


id: PBO:0060402
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"N-alpha-acetyltransferase 10, NatA catalytic subunit","termid":"PBO:0060402"}


id: GO:0046977
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to TAP protein, transporter associated with antigen processing protein. TAP protein is a heterodimeric peptide transporter consisting of the subunits TAP1 and TAP2.","definition_xrefs":["PMID:11133832"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein binding","termid":"GO:0005515"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005515"}],"interesting_parent_ids":["GO:0003674","GO:0005515","GO:0005488"],"is_obsolete":false,"name":"TAP binding","termid":"GO:0046977"}


id: FYPO:0000276
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A physical cellular phenotype in which the mitotic spindle forms with microtubules emanating from only one pole.","definition_xrefs":["PMID:11792803","PMID:9763447","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal mitotic spindle","termid":"FYPO:0000338"},{"relation_name":"output_of","term_name":"abolished mitotic spindle midzone assembly","termid":"FYPO:0005344"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000120"},{"rel_name":"output_of","termid":"FYPO:0000631"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"output_of","termid":"FYPO:0000641"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0000337"},{"rel_name":"output_of","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0002399"},{"rel_name":"output_of","termid":"FYPO:0000054"},{"rel_name":"output_of","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001985","FYPO:0000631","FYPO:0005447","FYPO:0000054","FYPO:0001320","FYPO:0002399","FYPO:0000120","FYPO:0000641","FYPO:0000337"],"is_obsolete":false,"name":"monopolar mitotic spindle","synonyms":[{"name":"V-shaped mitotic spindle","type":"related"},{"name":"fan-shaped mitotic spindle","type":"exact"},{"name":"monopolar mitotic spindle during vegetative growth","type":"exact"},{"name":"monopolar spindle during mitosis","type":"exact"},{"name":"monopolar spindle during mitotic cell cycle","type":"exact"},{"name":"spindle defects, monopolar mitotic spindle","type":"exact"},{"name":"spindle defects, monopolar spindle","type":"exact"}],"termid":"FYPO:0000276"}


id: GO:0051537
data:
  {"annotated_genes":["SJAG_04016","SJAG_01417","SJAG_01841","SJAG_00455","SJAG_01935","SJAG_00260","SJAG_02474","SJAG_03701","SJAG_00822","SJAG_00217","SJAG_02495","SJAG_00601","SJAG_04098","SJAG_02016","SJAG_04397","SJAG_00532","SJAG_00244"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[71543,73918,76952,78049,78609,83847,84570,86386,88814,90644,95970,97096,99914,104570,109938,110242,111788],"is_not":false,"summary":null,"term":"GO:0051537"}]},"cv_name":"molecular_function","definition":"Binding to a 2 iron, 2 sulfur (2Fe-2S) cluster; this cluster consists of two iron atoms, with two inorganic sulfur atoms found between the irons and acting as bridging ligands.","definition_xrefs":["PMID:15952888","GOC:ai","Wikipedia:Iron-sulfur_cluster"],"direct_ancestors":[{"relation_name":"is_a","term_name":"iron-sulfur cluster binding","termid":"GO:0051536"}],"gene_count":17,"genes_by_uniquename":{"SJAG_00217":null,"SJAG_00244":null,"SJAG_00260":null,"SJAG_00455":null,"SJAG_00532":null,"SJAG_00601":null,"SJAG_00822":null,"SJAG_01417":null,"SJAG_01841":null,"SJAG_01935":null,"SJAG_02016":null,"SJAG_02474":null,"SJAG_02495":null,"SJAG_03701":null,"SJAG_04016":null,"SJAG_04098":null,"SJAG_04397":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0005488","GO:0003674"],"is_obsolete":false,"name":"2 iron, 2 sulfur cluster binding","references_by_uniquename":{"GO_REF:0000107":null,"PMID:21873635":null},"synonyms":[{"name":"2 Fe 2 S cluster binding","type":"exact"},{"name":"2 iron, 2 sulphur cluster binding","type":"exact"},{"name":"2Fe-2S cluster binding","type":"exact"},{"name":"diiron disulfide cluster binding","type":"exact"},{"name":"diiron disulphide cluster binding","type":"exact"},{"name":"iron-sulfur cluster 2Fe-2S binding","type":"exact"},{"name":"iron-sulphur cluster 2Fe-2S binding","type":"exact"}],"termid":"GO:0051537","terms_by_termid":{"GO:0051537":null}}


id: GO:0042467
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The movement of a cell or organism in response to a stimulus in which the speed or frequency of movement is increased or decreased.","definition_xrefs":["PMID:8207088","GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"kinesis","termid":"GO:0042465"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"orthokinesis","termid":"GO:0042467"}


id: GO:0005402
data:
  {"annotated_genes":["SJAG_03820","SJAG_04068","SJAG_03606","SJAG_04905","SJAG_03960","SJAG_02958","SJAG_00057","SJAG_03608"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[75551,72941,74362,72972,71101,72750],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0005351"},{"annotations":[112330],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0005358"},{"annotations":[91354],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0005364"},{"annotations":[75048],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0008506"}]},"cv_name":"molecular_function","definition":"Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: sugar(out) + cation(out) = sugar(in) + cation(in).","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"carbohydrate transmembrane transporter activity","termid":"GO:0015144"},{"relation_name":"is_a","term_name":"solute:monoatomic cation symporter activity","termid":"GO:0015294"}],"gene_count":8,"genes_by_uniquename":{"SJAG_00057":null,"SJAG_02958":null,"SJAG_03606":null,"SJAG_03608":null,"SJAG_03820":null,"SJAG_03960":null,"SJAG_04068":null,"SJAG_04905":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0005215","GO:0022857","GO:0003674"],"is_obsolete":false,"name":"carbohydrate:monoatomic cation symporter activity","references_by_uniquename":{"GO_REF:0000107":null,"PMID:21873635":null},"synonyms":[{"name":"carbohydrate:cation symporter activity","type":"broad"},{"name":"cation/sugar symporter activity","type":"exact"},{"name":"cation:sugar symporter activity","type":"exact"},{"name":"sugar:cation symporter activity","type":"narrow"}],"termid":"GO:0005402","terms_by_termid":{"GO:0005351":null,"GO:0005358":null,"GO:0005364":null,"GO:0008506":null}}


id: GO:0050986
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The formation of an isopeptide cross-link between peptidyl-glutamate and peptidyl-glycine to produce N-(L-isoglutamyl)-glycine, as found in the antibiotic microcin J25.","definition_xrefs":["PMID:14531691","RESID:AA0360"],"direct_ancestors":[{"relation_name":"is_a","term_name":"peptidyl-glutamic acid modification","termid":"GO:0018200"},{"relation_name":"is_a","term_name":"peptidyl-glycine modification","termid":"GO:0018201"},{"relation_name":"is_a","term_name":"isopeptide cross-linking","termid":"GO:0018262"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"isopeptide cross-linking via N-(L-isoglutamyl)-glycine","termid":"GO:0050986"}


id: GO:0010348
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: Li+(in) + H+(out) = Li+(out) + H+(in).","definition_xrefs":["PMID:17270011"],"direct_ancestors":[{"relation_name":"is_a","term_name":"metal cation:proton antiporter activity","termid":"GO:0051139"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0005215","GO:0003674","GO:0022857"],"is_obsolete":false,"name":"lithium:proton antiporter activity","synonyms":[{"name":"lithium:hydrogen antiporter activity","type":"exact"}],"termid":"GO:0010348"}


id: PBO:0086214
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein that binds to DNA mismatches; forms heterodimers with Msh3p and Msh6p that bind to DNA mismatches to initiate the mismatch repair process; contains a Walker ATP-binding motif required for repair activity and involved in interstrand cross-link repair; Msh2p-Msh6p binds to and hydrolyzes ATP; required for silencing at the silent mating-type loci and telomeres","termid":"PBO:0086214"}


id: PR:G2TRQ6
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- tam11 gene.","definition_xrefs":["PRO:DNx","UniProtKB:G2TRQ6"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized protein tam11 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC17D1.17","synonyms":[{"name":"Spom972h-tam11","type":"exact"},{"name":"transcripts altered in meiosis protein 11 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:G2TRQ6"}


id: PBO:0030016
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-elongated_actin_filaments","termid":"PBO:0030016"}


id: PBO:0050562
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"HRG and FETUB antisense RNA 1","termid":"PBO:0050562"}


id: GO:0006794
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A series of processes that forms an integrated mechanism by which a cell or an organism detects the depletion of primary phosphorus source and then activates genes to scavenge the last traces of the primary phosphorus source and to transport and metabolize alternative phosphorus sources. The utilization process begins when the cell or organism detects phosphorus levels, includes the phosphorus-containing substances, and ends when phosphorus is incorporated into the cell or organism's metabolism.","definition_xrefs":["GOC:mlg","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phosphorus metabolic process","termid":"GO:0006793"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"phosphorus utilization","termid":"GO:0006794"}


id: PBO:0059422
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial ribosome recycling factor pseudogene 1","termid":"PBO:0059422"}


id: GO:0033312
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways leading to the formation of chlorophyll a, via the intermediate geranylgeranyl-chlorophyll a.","definition_xrefs":["MetaCyc:PWY-5064","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"chlorophyll a biosynthetic process","termid":"GO:0033305"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0033013"}],"interesting_parent_ids":["GO:0008150","GO:0033013"],"is_obsolete":false,"name":"chlorophyll a biosynthetic process via geranylgeranyl-chlorophyll a","synonyms":[{"name":"chlorophyll a anabolism via geranylgeranyl-chlorophyll a","type":"exact"},{"name":"chlorophyll a biosynthesis via geranylgeranyl-chlorophyll a","type":"exact"},{"name":"chlorophyll a formation via geranylgeranyl-chlorophyll a","type":"exact"},{"name":"chlorophyll a synthesis via geranylgeranyl-chlorophyll a","type":"exact"}],"termid":"GO:0033312"}


id: PBO:0083333
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Dubious open reading frame; unlikely to encode a functional protein, based on available experimental and comparative sequence data; overlaps ORF YFL015C","termid":"PBO:0083333"}


id: PBO:0036530
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cell surface glycoprotein, flocculin Pfl4","termid":"PBO:0036530"}


id: GO:0046096
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving deoxyuridine, 2-deoxyribosyluracil, one of the four major nucleosides of DNA.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pyrimidine deoxyribonucleoside metabolic process","termid":"GO:0046125"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0055086"}],"interesting_parent_ids":["GO:0055086","GO:0008150","GO:0044281"],"is_obsolete":false,"name":"deoxyuridine metabolic process","synonyms":[{"name":"deoxyuridine metabolism","type":"exact"}],"termid":"GO:0046096"}


id: GO:0098585
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The lipid bilayer surrounding a host synaptic vesicle.","definition_xrefs":["GOC:dos"],"direct_ancestors":[{"relation_name":"is_a","term_name":"host cell cytoplasmic vesicle membrane","termid":"GO:0044162"},{"relation_name":"part_of","term_name":"host cell synaptic vesicle","termid":"GO:0098584"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"host cell synaptic vesicle membrane","termid":"GO:0098585"}


id: GO:2000697
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of epithelial cell differentiation involved in kidney development.","definition_xrefs":["GOC:yaf","GOC:mtg_kidney_jan10"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of epithelial cell differentiation","termid":"GO:0030857"},{"relation_name":"is_a","term_name":"regulation of epithelial cell differentiation involved in kidney development","termid":"GO:2000696"},{"relation_name":"negatively_regulates","term_name":"epithelial cell differentiation involved in kidney development","termid":"GO:0035850"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of epithelial cell differentiation involved in kidney development","termid":"GO:2000697"}


id: PBO:0040320
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ATP synthase F1 subunit delta","termid":"PBO:0040320"}


id: GO:0005637
data:
  {"annotated_genes":["SJAG_03449","SJAG_03657","SJAG_01263","SJAG_00680","SJAG_01745","SJAG_05196","SJAG_05226","SJAG_03491"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[70933,84819,86998,89459,98259,98833],"is_not":false,"summary":null,"term":"GO:0005637"},{"annotations":[112665,75334],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:1990862"}]},"cv_name":"cellular_component","definition":"The inner, i.e. lumen-facing, lipid bilayer of the nuclear envelope.","definition_xrefs":["GOC:ma"],"direct_ancestors":[{"relation_name":"is_a","term_name":"organelle inner membrane","termid":"GO:0019866"},{"relation_name":"is_a","term_name":"nuclear membrane","termid":"GO:0031965"}],"gene_count":8,"genes_by_uniquename":{"SJAG_00680":null,"SJAG_01263":null,"SJAG_01745":null,"SJAG_03449":null,"SJAG_03491":null,"SJAG_03657":null,"SJAG_05196":null,"SJAG_05226":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005634"}],"interesting_parent_ids":["GO:0005575","GO:0005634"],"is_obsolete":false,"name":"nuclear inner membrane","references_by_uniquename":{"GO_REF:0000107":null,"PMID:21873635":null},"secondary_identifiers":["NIF_Subcellular:sao1612527463"],"synonyms":[{"name":"inner envelope","type":"broad"},{"name":"inner nuclear membrane","type":"exact"},{"name":"nucleus inner membrane","type":"exact"}],"termid":"GO:0005637","terms_by_termid":{"GO:0005637":null,"GO:1990862":null}}


id: PBO:0078961
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-Ser (anticodon AGA) 2-4","termid":"PBO:0078961"}


id: PBO:0042912
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cofilin 2","termid":"PBO:0042912"}


id: PBO:0075117
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nucleolar RNA, C/D box 166","termid":"PBO:0075117"}


id: PR:O43076
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein SHQ1 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PANTHER:PTHR12967:SF0","PRO:DNx","OMA:SCHPO02840"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protein shq1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC8D2.13","secondary_identifiers":["UniProtKB:O43076"],"synonyms":[{"name":"Spom972h-SHQ1","type":"exact"}],"termid":"PR:O43076"}


id: PBO:0026770
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_uracil_import","termid":"PBO:0026770"}


id: GO:0061367
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in the behaviour of an organism as a result of an acetic acid pain stimulus.","definition_xrefs":["GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"behavioral response to chemical pain","termid":"GO:0061366"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"behavioral response to acetic acid induced pain","termid":"GO:0061367"}


id: FYPO:0007380
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell morphology phenotype observed in the vegetative growth phase of the life cycle in which a cell is longer than normal, and a new growth zone forms along the lateral portion of the cell (often in the middle) before septation, such that a single cell grows in the form of the letter T.","definition_xrefs":["PomBase:mah","PomBase:vw"],"direct_ancestors":[{"relation_name":"is_a","term_name":"elongated vegetative cell","termid":"FYPO:0001122"},{"relation_name":"is_a","term_name":"T-shaped vegetative cell","termid":"FYPO:0007379"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"has_part","termid":"FYPO:0000004"},{"rel_name":"has_part","termid":"FYPO:0000005"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"has_part","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"has_part","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000005"},{"rel_name":"is_a","termid":"FYPO:0000004"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0005568"}],"interesting_parent_ids":["FYPO:0000004","FYPO:0000002","FYPO:0000005","FYPO:0005447","FYPO:0005568","FYPO:0001320","FYPO:0001985"],"is_obsolete":false,"name":"elongated T-shaped vegetative cell","synonyms":[{"name":"elongated T-shaped cell during vegetative growth","type":"exact"},{"name":"elongated T-shaped vegetative cell during mitotic cell cycle","type":"related"},{"name":"long T-shaped vegetative cell","type":"exact"}],"termid":"FYPO:0007380"}


id: PBO:0051614
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"interleukin 36 receptor antagonist","termid":"PBO:0051614"}


id: PBO:0084012
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Glycogen synthase; expression induced by glucose limitation, nitrogen starvation, environmental stress, and entry into stationary phase; GSY1 has a paralog, GSY2, that arose from the whole genome duplication; relocalizes from nucleus to cytoplasmic foci upon DNA replication stress","termid":"PBO:0084012"}


id: PBO:0000314
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"vacuolar sorting protein Vps55 (predicted)","termid":"PBO:0000314"}


id: PBO:0079203
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TSR1 ribosome maturation factor","termid":"PBO:0079203"}


id: FYPO:0005215
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to the kinetochore of a chromosome is decreased during mitosis.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased protein localization to kinetochore during vegetative growth","termid":"FYPO:0002902"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000138","FYPO:0001320","FYPO:0005447","FYPO:0000002"],"is_obsolete":false,"name":"decreased protein localization to kinetochore during mitosis","synonyms":[{"name":"decreased protein localisation to kinetochore during mitosis","type":"exact"},{"name":"decreased protein localization to kinetochore during mitotic M phase","type":"related"},{"name":"decreased protein localization to kinetochore during mitotic nuclear division","type":"exact"},{"name":"reduced protein localization to kinetochore during mitosis","type":"exact"}],"termid":"FYPO:0005215"}


id: GO:0050894
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process in which an emotional response is associated with a particular sensory stimulation.","definition_xrefs":["GOC:dph","GOC:ai","ISBN:0721662544"],"direct_ancestors":[{"relation_name":"is_a","term_name":"sensory processing","termid":"GO:0050893"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"determination of affect","termid":"GO:0050894"}


id: PBO:0077109
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"translocase of inner mitochondrial membrane 17A","termid":"PBO:0077109"}


id: GO:0046836
data:
  {"annotated_genes":["SJAG_03774","SJAG_02897"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[76239,90033],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0034203"}]},"cv_name":"biological_process","definition":"The directed movement of glycolipids, compounds containing (usually) 1-4 linked monosaccharide residues joined by a glycosyl linkage to a lipid, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"lipid transport","termid":"GO:0006869"},{"relation_name":"is_a","term_name":"carbohydrate derivative transport","termid":"GO:1901264"}],"gene_count":2,"genes_by_uniquename":{"SJAG_02897":null,"SJAG_03774":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0051179","GO:0006810","GO:0008150"],"is_obsolete":false,"name":"glycolipid transport","references_by_uniquename":{"GO_REF:0000107":null,"PMID:21873635":null},"termid":"GO:0046836","terms_by_termid":{"GO:0034203":null}}


id: GO:0034005
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 2-trans,6-trans-farnesyl diphosphate = (+)-(R)-germacrene A + diphosphate.","definition_xrefs":["RHEA:12516","EC:4.2.3.23"],"direct_ancestors":[{"relation_name":"is_a","term_name":"sesquiterpene synthase activity","termid":"GO:0010334"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016829"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016829"],"is_obsolete":false,"name":"germacrene-A synthase activity","secondary_identifiers":["MetaCyc:RXN-11527","KEGG_REACTION:R07649"],"synonyms":[{"name":"(+)-(10R)-germacrene A synthase activity","type":"related"},{"name":"(+)-germacrene A synthase activity","type":"related"},{"name":"2-trans,6-trans-farnesyl-diphosphate diphosphate-lyase (germacrene-A-forming) activity","type":"related"},{"name":"2-trans,6-trans-farnesyl-diphosphate diphosphate-lyase [(+)-germacrene-A-forming] activity","type":"related"},{"name":"GAS","type":"related"},{"name":"germacrene A synthase activity","type":"related"}],"termid":"GO:0034005"}


id: FYPO:0003987
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A physical cellular phenotype observed in the vegetative growth phase of the life cycle in which the amount, distribution, or morphology of actin cortical patches is abnormal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal actin cytoskeleton during vegetative growth","termid":"FYPO:0002398"},{"relation_name":"output_of","term_name":"abnormal actin cortical patch organization","termid":"FYPO:0000790"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"output_of","termid":"FYPO:0004803"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001985","FYPO:0004803","FYPO:0001320","FYPO:0005447"],"is_obsolete":false,"name":"abnormal actin cortical patch","synonyms":[{"name":"abnormal F-actin patch","type":"exact"},{"name":"abnormal actin cortical patch during mitotic cell cycle","type":"related"},{"name":"abnormal actin cortical patch during vegetative growth","type":"exact"},{"name":"abnormal actin cortical patches","type":"exact"},{"name":"abnormal actin patch","type":"exact"}],"termid":"FYPO:0003987"}


id: PBO:0079343
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"testis-specific transcript, Y-linked 27, pseudogene","termid":"PBO:0079343"}


id: MOD:00969
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"modification from DeltaMass","definition_xrefs":["DeltaMass:346"],"direct_ancestors":[{"relation_name":"is_a","term_name":"DeltaMass","termid":"MOD:00947"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CAM-Cys vs PAM-Cys","termid":"MOD:00969"}


id: PBO:0049437
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"GUSB pseudogene 14","termid":"PBO:0049437"}


id: GO:0047829
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: N2-(D-1,3-dicarboxypropyl)-L-arginine + NADP+ + H2O = L-arginine + 2-oxoglutarate + NADPH.","definition_xrefs":["MetaCyc:D-NOPALINE-DEHYDROGENASE-RXN","EC:1.5.1.19"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the CH-NH group of donors, NAD or NADP as acceptor","termid":"GO:0016646"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0003674","GO:0016491","GO:0003824"],"is_obsolete":false,"name":"D-nopaline dehydrogenase activity","secondary_identifiers":["RHEA:19637"],"synonyms":[{"name":"2-N-(D-1,3-dicarboxypropyl)-L-arginine:NADP+ oxidoreductase (L-arginine-forming)","type":"related"},{"name":"D-nopaline synthase activity","type":"related"},{"name":"N2-(D-1,3-dicarboxypropyl)-L-arginine:NADP+ oxidoreductase (L-arginine-forming)","type":"related"},{"name":"NOS activity","type":"related"},{"name":"nopaline dehydrogenase activity","type":"related"},{"name":"nopaline synthase activity","type":"related"}],"termid":"GO:0047829"}


