# terms

id: GO:0045283
data:
  {"annotated_genes":["SJAG_00260","SJAG_03920","SJAG_02398","SJAG_01671"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[84545,108389,74093,75212],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0005749"}]},"cv_name":"cellular_component","definition":"A membrane-bound flavoenzyme complex consisting of four subunits, A, B, C, and D. A and B comprise the membrane-extrinsic catalytic domain and C (InterPro:IPR003510; InterPro:IPR004224) and D (InterPro:IPR003418) link the catalytic centers to the electron-transport chain. This family consists of the 13 kDa hydrophobic subunit D. This component may be required to anchor the catalytic components of the fumarate reductase complex to the cytoplasmic membrane. Fumarate reductase couples the reduction of fumarate to succinate to the oxidation of quinol to quinone, in a reaction opposite to that catalyzed by the related complex II of the respiratory chain (succinate dehydrogenase-(ubiquinone)).","definition_xrefs":["InterPro:IPR003418","InterPro:IPR004224"],"direct_ancestors":[{"relation_name":"is_a","term_name":"respiratory chain complex","termid":"GO:0098803"},{"relation_name":"is_a","term_name":"catalytic complex","termid":"GO:1902494"},{"relation_name":"part_of","term_name":"respiratory chain complex II","termid":"GO:0045273"}],"gene_count":4,"genes_by_uniquename":{"SJAG_00260":null,"SJAG_01671":null,"SJAG_02398":null,"SJAG_03920":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0005575","GO:0032991"],"is_obsolete":false,"name":"fumarate reductase complex","references_by_uniquename":{"GO_REF:0000107":null,"PMID:21873635":null},"termid":"GO:0045283","terms_by_termid":{"GO:0005749":null}}


id: GO:0006602
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of creatinine, 2-amino-1,5-dihydro-1-methyl-4H-imidazol-4-one, an end product of creatine metabolism and a normal constituent of urine.","definition_xrefs":["ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"creatinine metabolic process","termid":"GO:0046449"},{"relation_name":"is_a","term_name":"lactam catabolic process","termid":"GO:0072340"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044248"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0044281","GO:0008150","GO:0044248"],"is_obsolete":false,"name":"creatinine catabolic process","synonyms":[{"name":"creatinine breakdown","type":"exact"},{"name":"creatinine catabolism","type":"exact"},{"name":"creatinine degradation","type":"exact"}],"termid":"GO:0006602"}


id: GO:0102254
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: neoagarotetraose + H2O = 3,6-anhydro-alpha-L-galactopyranose + agarotriose.","definition_xrefs":["EC:3.2.1.159","GOC:pz"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hydrolase activity, hydrolyzing O-glycosyl compounds","termid":"GO:0004553"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016798"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016787","GO:0003824","GO:0003674","GO:0016798"],"is_obsolete":false,"name":"neoagarotetraose 1,3-alpha-3,6-anhydro-L-galactosidase activity","secondary_identifiers":["MetaCyc:RXN-12427"],"termid":"GO:0102254"}


id: GO:0033996
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: beta-D-fructopyranosyl-(2->6)-[D-fructofuranosyl-(2->6)]n-D-fructofuranoside = beta-D-fructopyranosyl-(2->6)-[D-fructofuranosyl-(2->6)](n-1)-D-fructofuranoside + di-beta-D-fructofuranose 2,6':2',6-dianhydride. This reaction is the production of di-beta-D-fructofuranose 2,6':2',6-dianhydride (DFA IV) by successively eliminating the diminishing (2->6)-beta-D-fructan (levan) chain from the terminal D-fructosyl-D-fructosyl disaccharide.","definition_xrefs":["EC:4.2.2.16"],"direct_ancestors":[{"relation_name":"is_a","term_name":"carbon-oxygen lyase activity, acting on polysaccharides","termid":"GO:0016837"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016829"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016829"],"is_obsolete":false,"name":"levan fructotransferase (DFA-IV-forming) activity","secondary_identifiers":["MetaCyc:4.2.2.16-RXN"],"synonyms":[{"name":"2,6-beta-D-fructan D-fructosyl-D-fructosyltransferase (forming di-beta-D-fructofuranose 2,6':2',6-dianhydride) activity","type":"related"},{"name":"2,6-beta-D-fructan lyase (di-beta-D-fructofuranose-2,6':2',6-dianhydride-forming) activity","type":"related"},{"name":"levan fructotransferase activity","type":"related"}],"termid":"GO:0033996"}


id: PBO:0017536
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"splicing factor Tls1","termid":"PBO:0017536"}


id: GO:0043056
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Anterior movement of an organism, following the direction of the head of the animal.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"directional locomotion","termid":"GO:0033058"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"forward locomotion","termid":"GO:0043056"}


id: GO:0035922
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The morphogenetic process in which the foramen ovale closes after birth, to prevent blood flow between the right and left atria. In the fetal heart, the foramen ovale allows blood to enter the left atrium from the right atrium. Closure of the foramen ovale after birth stops this blood flow.","definition_xrefs":["PMID:19762328","UBERON:0004754","GOC:vk","Wikipedia:Foramen_ovale_(heart)","GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"anatomical structure morphogenesis","termid":"GO:0009653"},{"relation_name":"part_of","term_name":"cardiac septum morphogenesis","termid":"GO:0060411"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"foramen ovale closure","synonyms":[{"name":"foramen ovale of heart closure","type":"exact"}],"termid":"GO:0035922"}


id: PBO:0054645
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2050","termid":"PBO:0054645"}


id: PBO:0063788
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PHD finger protein 13","termid":"PBO:0063788"}


id: PBO:0056487
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MAU2 sister chromatid cohesion factor","termid":"PBO:0056487"}


id: PBO:0067951
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 5S ribosomal pseudogene 253","termid":"PBO:0067951"}


id: PBO:0026740
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_mitotic_cell_cycle_regulation_during_cellular_response_to_rapamycin","termid":"PBO:0026740"}


id: PBO:0084633
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Methyltransferase required for m3U2634 methylation of the 25S rRNA; S-adenosylmethionine-dependent; associates with precursors of the 60S ribosomal subunit; predicted to be involved in ribosome biogenesis","termid":"PBO:0084633"}


id: FYPO:0000368
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A physical cellular phenotype observed in the vegetative growth phase of the life cycle in which the size, shape, or structure of the fungal-type vacuole is abnormal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal vacuolar morphology","termid":"FYPO:0002257"},{"relation_name":"is_a","term_name":"abnormal cellular physical quality phenotype during vegetative growth","termid":"FYPO:0004639"},{"relation_name":"output_of","term_name":"abnormal vacuole organization during vegetative growth","termid":"FYPO:0000812"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"output_of","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0000002","FYPO:0001985","FYPO:0001320"],"is_obsolete":false,"name":"abnormal vacuolar morphology during vegetative growth","synonyms":[{"name":"abnormal vacuolar morphology during mitotic cell cycle","type":"related"},{"name":"abnormal vacuole morphology during vegetative growth","type":"exact"}],"termid":"FYPO:0000368"}


id: FYPO:0001778
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of one or more centromere(s) is abnormal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal protein complex localization","termid":"FYPO:0001440"},{"relation_name":"is_a","term_name":"abnormal organelle localization","termid":"FYPO:0006329"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0000138","FYPO:0001985","FYPO:0005447","FYPO:0001320","FYPO:0000002"],"is_obsolete":false,"name":"abnormal centromere localization","synonyms":[{"name":"abnormal centromere localisation","type":"exact"},{"name":"abnormal centromere localization during mitotic cell cycle","type":"related"},{"name":"abnormal centromere localization during vegetative growth","type":"exact"},{"name":"abnormal kinetochore localization","type":"exact"}],"termid":"FYPO:0001778"}


id: FYPO:0002417
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"OBSOLETE. A mixed population phenotype in which all cells in a population are inviable, and the population includes a mixture of ungerminated spores and germinated spores with elongated germ tubes. The elongated cells arise from division of some of the germinated spores, and may form a microcolony of up to 64 cells.","definition_xrefs":["PomBase:vw","PomBase:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete inviable mixed population including spores and germinated spores with elongated germ tubes (obsolete FYPO:0002417)","termid":"FYPO:0002417"}


id: PBO:0076186
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SUMO1 pseudogene 1","termid":"PBO:0076186"}


id: GO:0009217
data:
  {"annotated_genes":["SJAG_04487"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[94491],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0035863"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of purine deoxyribonucleoside triphosphate, a compound consisting of a purine base linked to a deoxyribose sugar esterified with triphosphate on the sugar.","definition_xrefs":["GOC:go_curators","ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"purine nucleoside triphosphate catabolic process","termid":"GO:0009146"},{"relation_name":"is_a","term_name":"deoxyribonucleoside triphosphate catabolic process","termid":"GO:0009204"},{"relation_name":"is_a","term_name":"purine deoxyribonucleoside triphosphate metabolic process","termid":"GO:0009215"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04487":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0055086"},{"rel_name":"is_a","termid":"GO:0044248"}],"interesting_parent_ids":["GO:0044281","GO:0008150","GO:0055086","GO:0044248"],"is_obsolete":false,"name":"purine deoxyribonucleoside triphosphate catabolic process","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"purine deoxyribonucleoside triphosphate breakdown","type":"exact"},{"name":"purine deoxyribonucleoside triphosphate catabolism","type":"exact"},{"name":"purine deoxyribonucleoside triphosphate degradation","type":"exact"}],"termid":"GO:0009217","terms_by_termid":{"GO:0035863":null}}


id: GO:0031635
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"An adenylate cyclase-inhibiting G protein-coupled receptor signaling pathway initiated by an opioid binding to its receptor, and ending with the regulation of a downstream cellular process.","definition_xrefs":["GOC:dph","GOC:mah","GOC:signaling","GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"adenylate cyclase-inhibiting G protein-coupled receptor signaling pathway","termid":"GO:0007193"},{"relation_name":"is_a","term_name":"G protein-coupled opioid receptor signaling pathway","termid":"GO:0038003"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"adenylate cyclase-inhibiting opioid receptor signaling pathway","synonyms":[{"name":"inhibition of adenylate cyclase activity by opioid receptor signaling pathway","type":"related"},{"name":"inhibition of adenylate cyclase activity by opioid receptor signalling pathway","type":"related"},{"name":"opioid receptor, adenylate cyclase inhibiting pathway","type":"exact"}],"termid":"GO:0031635"}


id: GO:0106238
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction:peregrinol diphosphate = all-trans-geranylgeranyl diphosphate + H2O.","definition_xrefs":["GOC:emb","PMID:29315936","PMID:24990389","RHEA:54652"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hydro-lyase activity","termid":"GO:0016836"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016829"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016829","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"peregrinol diphosphate synthase activity","secondary_identifiers":["EC:4.2.1.174"],"termid":"GO:0106238"}


id: GO:1900086
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of peptidyl-tyrosine autophosphorylation.","definition_xrefs":["GOC:bf","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of protein autophosphorylation","termid":"GO:0031954"},{"relation_name":"is_a","term_name":"positive regulation of peptidyl-tyrosine phosphorylation","termid":"GO:0050731"},{"relation_name":"is_a","term_name":"regulation of peptidyl-tyrosine autophosphorylation","termid":"GO:1900084"},{"relation_name":"positively_regulates","term_name":"peptidyl-tyrosine autophosphorylation","termid":"GO:0038083"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of peptidyl-tyrosine autophosphorylation","synonyms":[{"name":"activation of peptidyl-tyrosine autophosphorylation","type":"narrow"},{"name":"activation of receptor tyrosine kinase autophosphorylation","type":"narrow"},{"name":"activation of tyrosine autophosphorylation","type":"narrow"},{"name":"positive regulation of receptor tyrosine kinase autophosphorylation","type":"narrow"},{"name":"positive regulation of tyrosine autophosphorylation","type":"exact"},{"name":"up regulation of peptidyl-tyrosine autophosphorylation","type":"exact"},{"name":"up regulation of receptor tyrosine kinase autophosphorylation","type":"narrow"},{"name":"up regulation of tyrosine autophosphorylation","type":"exact"},{"name":"up-regulation of peptidyl-tyrosine autophosphorylation","type":"exact"},{"name":"up-regulation of receptor tyrosine kinase autophosphorylation","type":"narrow"},{"name":"up-regulation of tyrosine autophosphorylation","type":"exact"},{"name":"upregulation of peptidyl-tyrosine autophosphorylation","type":"exact"},{"name":"upregulation of receptor tyrosine kinase autophosphorylation","type":"narrow"},{"name":"upregulation of tyrosine autophosphorylation","type":"exact"}],"termid":"GO:1900086"}


id: GO:0046785
data:
  {"annotated_genes":["SJAG_01215","SJAG_02737","SJAG_02609","SJAG_00856","SJAG_02761","SJAG_07018","SJAG_03835","SJAG_02886","SJAG_01756","SJAG_03540","SJAG_02624"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[113188],"is_not":false,"summary":null,"term":"GO:0046785"},{"annotations":[112039],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0030954"},{"annotations":[105845,104898,104154],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0007020"},{"annotations":[95551,96447,101800,112044,112272,95852],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0051415"},{"annotations":[96448,113689],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0051417"}]},"cv_name":"biological_process","definition":"The addition of tubulin heterodimers to one or both ends of a microtubule.","definition_xrefs":["GOC:go_curators","GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"microtubule polymerization or depolymerization","termid":"GO:0031109"},{"relation_name":"is_a","term_name":"protein polymerization","termid":"GO:0051258"},{"relation_name":"is_a","term_name":"supramolecular fiber organization","termid":"GO:0097435"}],"gene_count":11,"genes_by_uniquename":{"SJAG_00856":null,"SJAG_01215":null,"SJAG_01756":null,"SJAG_02609":null,"SJAG_02624":null,"SJAG_02737":null,"SJAG_02761":null,"SJAG_02886":null,"SJAG_03540":null,"SJAG_03835":null,"SJAG_07018":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0000226"},{"rel_name":"part_of","termid":"GO:0044085"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0065003"},{"rel_name":"is_a","termid":"GO:0007010"}],"interesting_parent_ids":["GO:0007010","GO:0000226","GO:0008150","GO:0044085","GO:0065003"],"is_obsolete":false,"name":"microtubule polymerization","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"microtubule assembly","type":"exact"},{"name":"microtubule formation","type":"related"}],"termid":"GO:0046785","terms_by_termid":{"GO:0007020":null,"GO:0030954":null,"GO:0046785":null,"GO:0051415":null,"GO:0051417":null}}


id: GO:0071406
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a methylmercury stimulus.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to methylmercury","termid":"GO:0051597"},{"relation_name":"is_a","term_name":"cellular response to organic substance","termid":"GO:0071310"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cellular response to methylmercury","synonyms":[{"name":"cellular response to CH3-Hg+","type":"exact"},{"name":"cellular response to MeHg+","type":"exact"}],"termid":"GO:0071406"}


id: PBO:0050584
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"heparan sulfate 6-O-sulfotransferase 1 pseudogene 1","termid":"PBO:0050584"}


id: FYPO:0001233
data:
  {"alleles_by_uniquename":{"SJAG_02763:allele-3":{"allele_type":"amino_acid_mutation","description":"S235A; S651","gene_uniquename":"SJAG_02763","name":"ned1S235A/S651","synonyms":[{"name":"refractory to phosphorylation","reference":"PMID:26774782","type":"exact"}],"uniquename":"SJAG_02763:allele-3"},"SJAG_03250:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_03250","name":"sst4delta","uniquename":"SJAG_03250:allele-1"}},"annotation_feature_type":"genotype","cv_annotations":{"single_locus_phenotype":[{"annotations":[114233],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0003751"},{"annotations":[114443],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0003780"}]},"cv_name":"fission_yeast_phenotype","definition":"A cell phenotype in which the amount, distribution, composition or morphology of a cell part is normal (i.e. indistinguishable from wild type).","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal cellular physical quality phenotype","termid":"FYPO:0007723"}],"gene_count":2,"genes_by_uniquename":{"SJAG_02763":null,"SJAG_03250":null},"genotype_count":2,"genotypes_by_uniquename":{"ned1S235A_S651-S235A__S651-amino_acid_mutation-expression-not_assayed_or_wild_type":{"display_name":"ned1S235A/S651(S235A; S651 aa)","display_uniquename":"ned1S235A_S651-S235A__S651-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_02763:allele-3","expression":"Not assayed or wild type"}]}]},"sst4delta":{"display_name":"sst4delta","display_uniquename":"sst4delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03250:allele-1","expression":"Null"}]}]}},"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000257"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0000257"],"is_obsolete":false,"name":"normal subcellular component","references_by_uniquename":{"PMID:26774782":null,"PMID:32109380":null},"single_locus_annotated_genes":["SJAG_02763","SJAG_03250"],"single_locus_genotype_uniquenames":["ned1S235A_S651-S235A__S651-amino_acid_mutation-expression-not_assayed_or_wild_type","sst4delta"],"synonyms":[{"name":"normal subcellular structure","type":"related"}],"termid":"FYPO:0001233","terms_by_termid":{"FYPO:0003751":null,"FYPO:0003780":null}}


id: GO:1905663
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of telomerase RNA reverse transcriptase activity.","definition_xrefs":["GO_REF:0000059","GOC:nc","GOC:TermGenie","PMID:22633954","GOC:BHF","GOC:BHF_telomere"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of transferase activity","termid":"GO:0051347"},{"relation_name":"is_a","term_name":"regulation of telomerase RNA reverse transcriptase activity","termid":"GO:1905661"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0006259"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0006259"],"is_obsolete":false,"name":"positive regulation of telomerase RNA reverse transcriptase activity","synonyms":[{"name":"activation of telomerase RNA reverse transcriptase activity","type":"narrow"},{"name":"activation of telomerase, catalyst","type":"narrow"},{"name":"positive regulation of telomerase, catalyst","type":"exact"},{"name":"up regulation of telomerase RNA reverse transcriptase activity","type":"exact"},{"name":"up regulation of telomerase, catalyst","type":"exact"},{"name":"up-regulation of telomerase RNA reverse transcriptase activity","type":"exact"},{"name":"up-regulation of telomerase, catalyst","type":"exact"},{"name":"upregulation of telomerase RNA reverse transcriptase activity","type":"exact"},{"name":"upregulation of telomerase, catalyst","type":"exact"}],"termid":"GO:1905663"}


id: PBO:0091731
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"centromeric small non-coding RNA","termid":"PBO:0091731"}


id: GO:0052688
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: (3R)-3-isopropenyl-6-oxoheptanoate + CoA-SH + ATP = H2O + AMP + diphosphate + (3R)-3-isopropenyl-6-oxoheptanoyl-CoA.","definition_xrefs":["KEGG_REACTION:R06515"],"direct_ancestors":[{"relation_name":"is_a","term_name":"CoA-ligase activity","termid":"GO:0016405"},{"relation_name":"is_a","term_name":"acid-thiol ligase activity","termid":"GO:0016878"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016874"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016874"],"is_obsolete":false,"name":"(3R)-3-isopropenyl-6-oxoheptanoate:CoA ligase (AMP-forming) activity","synonyms":[{"name":"3-isopropenyl-6-oxoheptanoyl-CoA synthetase activity","type":"broad"}],"termid":"GO:0052688"}


id: FYPO:0008092
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"Auxotrophy in which a cell is unable to synthesize para-hydroxy benzoic acid and therefore requires para-hydroxy benzoic acid in the medium for vegetative cell growth.","definition_xrefs":["PMID:37156397"],"direct_ancestors":[{"relation_name":"is_a","term_name":"auxotrophy","termid":"FYPO:0000128"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0000002"],"is_obsolete":false,"name":"growth auxotrophic for para-hydroxy benzoic acid","termid":"FYPO:0008092"}


id: GO:1990621
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"An ESCRT complex that has AAA-ATPase activity and is involved in ESCRT-mediated intralumenal vesicle formation and the final stages of cytokinesis. The complex catalyzes disassembly of the ESCRT III filament around the neck of the budding vesicle in an ATP-driven reaction, resulting in membrane scission and recycling of the ESCRT III components back to the cytosol. In yeast, it is formed by the AAA ATPase Vps4 and its cofactor Vta1.","definition_xrefs":["PMID:25164817","PMID:24456136","PMID:26775243","GOC:ha","GOC:bhm","PMID:21925211","PMID:20653365","PMID:20696398"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ESCRT complex","termid":"GO:0036452"},{"relation_name":"is_a","term_name":"membrane protein complex","termid":"GO:0098796"},{"relation_name":"is_a","term_name":"ATPase complex","termid":"GO:1904949"},{"relation_name":"part_of","term_name":"endosome membrane","termid":"GO:0010008"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"part_of","termid":"GO:0031410"},{"rel_name":"part_of","termid":"GO:0005768"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0032991","GO:0005768","GO:0005737","GO:0005575","GO:0031410"],"is_obsolete":false,"name":"ESCRT IV complex","synonyms":[{"name":"ESCRT-IV","type":"exact"},{"name":"VPS4A-VPS4B","type":"narrow"},{"name":"VPS4A/B complex","type":"narrow"},{"name":"Vps4 complex","type":"related"},{"name":"Vps4-Vta1 complex","type":"narrow"},{"name":"Vta1-Vps4 complex","type":"related"},{"name":"vacuolar protein sorting-associated complex","type":"related"}],"termid":"GO:1990621"}


id: GO:0031667
data:
  {"annotated_genes":["SJAG_03256","SJAG_04725","SJAG_03309","SJAG_02699","SJAG_02496","SJAG_00233","SJAG_03319","SJAG_02380","SJAG_00534","SJAG_04637","SJAG_04032","SJAG_00781","SJAG_04743","SJAG_02973","SJAG_01245","SJAG_04873","SJAG_01162","SJAG_03519","SJAG_03048","SJAG_01970","SJAG_00209","SJAG_00256","SJAG_00380","SJAG_04031","SJAG_04054","SJAG_01509","SJAG_04067","SJAG_00169","SJAG_03486","SJAG_00359","SJAG_02026","SJAG_03266","SJAG_04268"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[89856,112801,72051],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0019676"},{"annotations":[71648,104955,90782,75191,90256],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0034198"},{"annotations":[75255,75352,95902,111599],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0042149"},{"annotations":[89693,89701,99190],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0010106"},{"annotations":[100582],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0036245"},{"annotations":[71926,102915,108530,108529],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0016036"},{"annotations":[76140,90210,77193],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0009267"},{"annotations":[110705],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0031142"},{"annotations":[99238],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:1901481"},{"annotations":[98219,99241],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:1901482"},{"annotations":[96673,109907],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0019740"},{"annotations":[96843,83619],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:1905287"},{"annotations":[97815],"is_not":false,"rel_names":["regulates"],"summary":null,"term":"GO:1904547"},{"annotations":[70650,109022],"is_not":false,"rel_names":["regulates"],"summary":null,"term":"GO:0006808"}]},"cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus reflecting the presence, absence, or concentration of nutrients.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to extracellular stimulus","termid":"GO:0009991"}],"gene_count":33,"genes_by_uniquename":{"SJAG_00169":null,"SJAG_00209":null,"SJAG_00233":null,"SJAG_00256":null,"SJAG_00359":null,"SJAG_00380":null,"SJAG_00534":null,"SJAG_00781":null,"SJAG_01162":null,"SJAG_01245":null,"SJAG_01509":null,"SJAG_01970":null,"SJAG_02026":null,"SJAG_02380":null,"SJAG_02496":null,"SJAG_02699":null,"SJAG_02973":null,"SJAG_03048":null,"SJAG_03256":null,"SJAG_03266":null,"SJAG_03309":null,"SJAG_03319":null,"SJAG_03486":null,"SJAG_03519":null,"SJAG_04031":null,"SJAG_04032":null,"SJAG_04054":null,"SJAG_04067":null,"SJAG_04268":null,"SJAG_04637":null,"SJAG_04725":null,"SJAG_04743":null,"SJAG_04873":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"response to nutrient levels","references_by_uniquename":{"GO_REF:0000107":null,"PMID:21873635":null},"termid":"GO:0031667","terms_by_termid":{"GO:0006808":null,"GO:0009267":null,"GO:0010106":null,"GO:0016036":null,"GO:0019676":null,"GO:0019740":null,"GO:0031142":null,"GO:0034198":null,"GO:0036245":null,"GO:0042149":null,"GO:1901481":null,"GO:1901482":null,"GO:1904547":null,"GO:1905287":null}}


id: GO:2000770
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of establishment or maintenance of cell polarity regulating cell shape.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of cellular process","termid":"GO:0048523"},{"relation_name":"is_a","term_name":"regulation of establishment or maintenance of cell polarity regulating cell shape","termid":"GO:2000769"},{"relation_name":"negatively_regulates","term_name":"establishment or maintenance of cell polarity regulating cell shape","termid":"GO:0071963"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"negatively_regulates","termid":"GO:0007163"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0007163"}],"interesting_parent_ids":["GO:0007163","GO:0008150"],"is_obsolete":false,"name":"negative regulation of establishment or maintenance of cell polarity regulating cell shape","termid":"GO:2000770"}


id: GO:0098700
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The active transport of neurotransmitters into a synaptic vesicle. This import is fuelled by an electrochemical gradient across the vesicle membrane, established by the action of proton pumps.","definition_xrefs":["GOC:bf","GOC:pad","PMID:15217342","GOC:PARL","PMID:10099709"],"direct_ancestors":[{"relation_name":"is_a","term_name":"neurotransmitter transport","termid":"GO:0006836"},{"relation_name":"is_a","term_name":"establishment of localization in cell","termid":"GO:0051649"},{"relation_name":"part_of","term_name":"synaptic vesicle cycle","termid":"GO:0099504"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"part_of","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"part_of","termid":"GO:0016192"}],"interesting_parent_ids":["GO:0008150","GO:0016192","GO:0051179","GO:0006810"],"is_obsolete":false,"name":"neurotransmitter loading into synaptic vesicle","synonyms":[{"name":"neurotransmitter import into synaptic vesicle","type":"exact"},{"name":"neurotransmitter uptake into synaptic vesicle","type":"exact"},{"name":"synaptic vesicle neurotransmitter loading","type":"exact"}],"termid":"GO:0098700"}


id: SO:0001768
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"When a variant has become fixed in the population so that it is now the only variant.","direct_ancestors":[{"relation_name":"is_a","term_name":"variant_frequency","termid":"SO:0001763"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"fixed_variant","synonyms":[{"name":"fixed variant","type":"exact"}],"termid":"SO:0001768"}


id: PBO:0078211
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"T cell receptor beta variable 7-4","termid":"PBO:0078211"}


id: GO:0071510
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that initiates the activity of the inactive enzyme MAP kinase kinase kinase in the context of conjugation with cellular fusion.","definition_xrefs":["GOC:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete activation of MAPKKK activity involved in conjugation with cellular fusion (obsolete GO:0071510)","synonyms":[{"name":"activation of MAP kinase kinase kinase activity during conjugation with cellular fusion","type":"exact"},{"name":"activation of MAPKKK activity involved in mating response","type":"related"},{"name":"conjugation with cellular fusion, activation of MAP kinase kinase kinase activity","type":"exact"},{"name":"conjugation with cellular fusion, activation of MAPKKK activity","type":"exact"}],"termid":"GO:0071510"}


id: GO:0006088
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. (Was not defined before being made obsolete).","definition_xrefs":["GOC:ai"],"gene_count":0,"genotype_count":0,"name":"obsolete acetate to acetyl-CoA (obsolete GO:0006088)","synonyms":[{"name":"acetate to acetyl-CoA","type":"exact"}],"termid":"GO:0006088"}


id: PBO:0089273
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cytoplasmic P body 3'-5'-exoribonuclease, Dis3L2-related","termid":"PBO:0089273"}


id: PBO:0048370
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"GTPase activating protein and VPS9 domains 1","termid":"PBO:0048370"}


id: PBO:0064037
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"piwi-interacting RNA cluster 71","termid":"PBO:0064037"}


id: FYPO:0003608
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which the observed rate of dehydrodolichyl diphosphate synthase activity is abnormal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal catalytic activity","termid":"FYPO:0000661"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000707"},{"rel_name":"is_a","termid":"FYPO:0000661"},{"rel_name":"is_a","termid":"FYPO:0000654"},{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0000707","FYPO:0000654","FYPO:0000652","FYPO:0001985","FYPO:0000661"],"is_obsolete":false,"name":"abnormal dehydrodolichyl diphosphate synthase activity","termid":"FYPO:0003608"}


id: PATO:0002175
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A spatial quality inhering in a bearer by virtue of the bearer's changed direction of position towards another entity.","definition_xrefs":["PATO:GVG"],"direct_ancestors":[{"relation_name":"is_a","term_name":"spatial pattern","termid":"PATO:0000060"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"deviation","termid":"PATO:0002175"}


id: PBO:0068713
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U4atac small nuclear 2, pseudogene","termid":"PBO:0068713"}


id: PBO:0059782
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MT-CYB pseudogene 8","termid":"PBO:0059782"}


id: GO:0035333
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The proteolytic cleavages to the Notch protein that occur as a result of ligand binding. Ligand binding at the cell surface exposes an otherwise inaccessible cleavage site in the extracellular portion of Notch, which when cleaved releases a membrane-tethered form of the Notch intracellular domain. Subsequent cleavage within the transmembrane domain then leads to the release of the soluble Notch intracellular domain (NICD).","definition_xrefs":["GOC:bf","PMID:12651094"],"direct_ancestors":[{"relation_name":"is_a","term_name":"membrane protein intracellular domain proteolysis","termid":"GO:0031293"},{"relation_name":"part_of","term_name":"Notch signaling pathway","termid":"GO:0007219"},{"relation_name":"part_of","term_name":"Notch receptor processing","termid":"GO:0007220"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"Notch receptor processing, ligand-dependent","synonyms":[{"name":"Notch S2 cleavage","type":"narrow"},{"name":"Notch S3 cleavage","type":"narrow"}],"termid":"GO:0035333"}


id: GO:0062240
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to euchromatin and the nuclear inner membrane, in order to establish and maintain the euchromatin location and organization.","definition_xrefs":["PMID:31635174"],"direct_ancestors":[{"relation_name":"is_a","term_name":"chromatin-nuclear membrane anchor activity","termid":"GO:0140707"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0060090"},{"rel_name":"is_a","termid":"GO:0030674"}],"interesting_parent_ids":["GO:0030674","GO:0060090","GO:0003674"],"is_obsolete":false,"name":"euchromatin-nuclear membrane anchor activity","synonyms":[{"name":"euchromatin-nuclear membrane tether activity","type":"exact"},{"name":"nuclear membrane-euchromatin anchor activity","type":"exact"},{"name":"nuclear membrane-euchromatin tether activity","type":"exact"}],"termid":"GO:0062240"}


id: PBO:0084566
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Membrane peroxin of the peroxisomal importomer complex; complex facilitates the import of peroxisomal matrix proteins; required for peroxisome biogenesis","termid":"PBO:0084566"}


id: PATO:0000181
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0000181 piloerection (obsolete PATO:0000181)","termid":"PATO:0000181"}


id: PBO:0058022
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 3972","termid":"PBO:0058022"}


id: PBO:0029140
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_protein_level_in_autophagosome","termid":"PBO:0029140"}


id: PBO:0040333
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ATP synthase membrane subunit c locus 1 pseudogene 8","termid":"PBO:0040333"}


id: GO:0102091
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: H2O + a 1-phosphatidyl-1D-myo-inositol 5-phosphate = an 1-phosphatidyl-1D-myo-inositol + phosphate.","definition_xrefs":["GOC:pz","PMID:12878591"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phosphatidylinositol monophosphate phosphatase activity","termid":"GO:0052744"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016788"},{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016788","GO:0016787"],"is_obsolete":false,"name":"phosphatidylinositol-5-phosphate phosphatase activity","secondary_identifiers":["MetaCyc:RXN-10962"],"synonyms":[{"name":"phosphatidylinositol-5-phosphate 5-phosphatase activity","type":"exact"}],"termid":"GO:0102091"}


id: PBO:0052463
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"KLF transcription factor 10","termid":"PBO:0052463"}


id: PBO:0031604
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_cell_cycle_arrest_in_mitotic_S_phase","termid":"PBO:0031604"}


id: PBO:0051471
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"immunoglobulin lambda variable (I)-70 (pseudogene)","termid":"PBO:0051471"}


id: PBO:0091257
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cobalt/nickel-dependent phosphatase involved in cellular detoxification/metabolite repair Duf8901","termid":"PBO:0091257"}


id: GO:0019245
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of D(-)-lactate from other compounds, including pyruvate.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"lactate biosynthetic process from pyruvate","termid":"GO:0019244"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0044281","GO:0008150"],"is_obsolete":false,"name":"D(-)-lactate biosynthetic process from pyruvate","synonyms":[{"name":"D(-)-lactate anabolism from pyruvate","type":"exact"},{"name":"D(-)-lactate formation from pyruvate","type":"exact"},{"name":"D(-)-lactate synthesis from pyruvate","type":"exact"}],"termid":"GO:0019245"}


id: GO:0030942
data:
  {"annotated_genes":["SJAG_03684","SJAG_01282","SJAG_01759"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[74814,87264,110280],"is_not":false,"summary":null,"term":"GO:0030942"}]},"cv_name":"molecular_function","definition":"Binding to an endoplasmic reticulum signal peptide, a specific peptide sequence that acts as a signal to localize the protein within the endoplasmic reticulum.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"signal sequence binding","termid":"GO:0005048"}],"gene_count":3,"genes_by_uniquename":{"SJAG_01282":null,"SJAG_01759":null,"SJAG_03684":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005048"},{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0005488","GO:0005048"],"is_obsolete":false,"name":"endoplasmic reticulum signal peptide binding","references_by_uniquename":{"GO_REF:0000107":null,"PMID:21873635":null},"synonyms":[{"name":"ER signal peptide binding","type":"exact"}],"termid":"GO:0030942","terms_by_termid":{"GO:0030942":null}}


id: GO:0046036
data:
  {"annotated_genes":["SJAG_03676","SJAG_02887","SJAG_00533","SJAG_03708","SJAG_05024"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[109147],"is_not":false,"summary":null,"term":"GO:0046036"},{"annotations":[83556],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0044210"},{"annotations":[95541],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006241"},{"annotations":[110070,88568],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0044211"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways involving CTP, cytidine triphosphate.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pyrimidine ribonucleoside triphosphate metabolic process","termid":"GO:0009208"},{"relation_name":"is_a","term_name":"pyrimidine ribonucleotide metabolic process","termid":"GO:0009218"}],"gene_count":5,"genes_by_uniquename":{"SJAG_00533":null,"SJAG_02887":null,"SJAG_03676":null,"SJAG_03708":null,"SJAG_05024":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0055086"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0055086","GO:0008150","GO:0044281"],"is_obsolete":false,"name":"CTP metabolic process","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["GO:0006243"],"synonyms":[{"name":"CTP deamination","type":"narrow"},{"name":"CTP metabolism","type":"exact"}],"termid":"GO:0046036","terms_by_termid":{"GO:0006241":null,"GO:0044210":null,"GO:0044211":null,"GO:0046036":null}}


id: GO:0180019
data:
  {"annotated_genes":["SJAG_03327","SJAG_04259"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[96788,108968],"is_not":false,"summary":null,"term":"GO:0180019"}]},"cv_name":"cellular_component","definition":"A kinetochore subcomplex that binds to centromeric chromatin and forms part of the outer kinetochore. It helps to recruit outer kinetochore subunits that will bind to microtubules. In humans and yeast respectively, it consists of KNL1/Spc105p and ZWINT/Kre28p.","definition_xrefs":["PMID:27881301"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein-containing complex","termid":"GO:0032991"},{"relation_name":"part_of","term_name":"outer kinetochore","termid":"GO:0000940"}],"gene_count":2,"genes_by_uniquename":{"SJAG_03327":null,"SJAG_04259":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0000776"},{"rel_name":"part_of","termid":"GO:0005694"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005694","GO:0032991","GO:0005575","GO:0000776"],"is_obsolete":false,"name":"Knl1/Spc105 complex","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0180019","terms_by_termid":{"GO:0180019":null}}


id: GO:0035744
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that contributes to cytokine production by a T-helper 1 cell.","definition_xrefs":["CL:0000545","GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"CD4-positive, alpha-beta T cell cytokine production","termid":"GO:0035743"},{"relation_name":"part_of","term_name":"T-helper 1 type immune response","termid":"GO:0042088"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0010467","GO:0008150"],"is_obsolete":false,"name":"T-helper 1 cell cytokine production","synonyms":[{"name":"Th1 cell cytokine production","type":"exact"}],"termid":"GO:0035744"}


id: FYPO:0006975
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype in which the amount of RNA measured in a cell is too low to detect during the meiotic cell cycle. Total RNA or a specific RNA may be affected.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"RNA absent from cell","termid":"FYPO:0001889"},{"relation_name":"is_a","term_name":"decreased RNA level during meiosis","termid":"FYPO:0002959"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"output_of","termid":"FYPO:0006551"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"output_of","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001985","FYPO:0005447","FYPO:0006551"],"is_obsolete":false,"name":"RNA absent from cell during meiotic cell cycle","synonyms":[{"name":"transcripts absent from cell during meiotic cell cycle","type":"exact"},{"name":"undetectable cellular RNA level during meiotic cell cycle","type":"exact"}],"termid":"FYPO:0006975"}


id: GO:0052057
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The process in which an organism effects a change in the structure or function of its host organism, mediated by a substance secreted by a type III secretion system in the organism. The host is defined as the larger of the organisms involved in a symbiotic interaction.","definition_xrefs":["GOC:mtg_pamgo_17jul06"],"gene_count":0,"genotype_count":0,"name":"obsolete modification by symbiont of host morphology or physiology via protein secreted by type III secretion system (obsolete GO:0052057)","termid":"GO:0052057"}


id: PBO:0034107
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-surrounded_by","termid":"PBO:0034107"}


id: PBO:0027936
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_cell_population_growth_on_glycerol_carbon_source","termid":"PBO:0027936"}


id: PBO:0057003
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 96","termid":"PBO:0057003"}


id: PBO:0089561
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"metaxin 1 (Sam37)","termid":"PBO:0089561"}


id: GO:0006232
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of TDP, ribosylthymine diphosphate.","definition_xrefs":["ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pyrimidine ribonucleoside diphosphate biosynthetic process","termid":"GO:0009194"},{"relation_name":"is_a","term_name":"pyrimidine ribonucleotide biosynthetic process","termid":"GO:0009220"},{"relation_name":"is_a","term_name":"TDP metabolic process","termid":"GO:0046043"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0055086"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0008150","GO:0044281","GO:0055086"],"is_obsolete":false,"name":"TDP biosynthetic process","synonyms":[{"name":"TDP anabolism","type":"exact"},{"name":"TDP biosynthesis","type":"exact"},{"name":"TDP formation","type":"exact"},{"name":"TDP synthesis","type":"exact"}],"termid":"GO:0006232"}


id: PBO:0076314
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"synemin","termid":"PBO:0076314"}


id: PBO:0042258
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chaperonin containing TCP1 subunit 4","termid":"PBO:0042258"}


id: PBO:0054217
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1597","termid":"PBO:0054217"}


id: GO:0034248
data:
  {"annotated_genes":["SJAG_00786","SJAG_01249","SJAG_01187","SJAG_00685","SJAG_03501","SJAG_00251","SJAG_01942","SJAG_01517","SJAG_02285","SJAG_00690","SJAG_00579","SJAG_04756","SJAG_05314","SJAG_02723","SJAG_00423","SJAG_04130","SJAG_01047","SJAG_02592","SJAG_04452","SJAG_04312","SJAG_04873","SJAG_02380","SJAG_00169","SJAG_02467","SJAG_02043","SJAG_02812","SJAG_16454","SJAG_02189","SJAG_04959","SJAG_05000","SJAG_01058","SJAG_04159","SJAG_02638","SJAG_04890","SJAG_00792","SJAG_03677","SJAG_04383","SJAG_02026","SJAG_01436","SJAG_04085","SJAG_01079","SJAG_00600","SJAG_00892","SJAG_03550","SJAG_03869","SJAG_04291","SJAG_04544"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[110010,113264,91149,97286,94927],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:2000766"},{"annotations":[86950,107382],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1904689"},{"annotations":[89951,72395,70247,94824,110733,88424],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1990625"},{"annotations":[89659],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1905569"},{"annotations":[110604,106608],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:2001211"},{"annotations":[102003,112215,70091],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:2000767"},{"annotations":[97348,107874,94209],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0070131"},{"annotations":[95920],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0070134"},{"annotations":[85399],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1905857"},{"annotations":[68560,66787],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0045901"},{"annotations":[72611],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0045948"},{"annotations":[66788,68561],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0045905"},{"annotations":[100607,112534,85958,97995,96177,95737,107607,111928,91633,91766,104994,106399],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:2000765"},{"annotations":[109162,104779,105429,91024],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0140018"},{"annotations":[90783,99366],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1990611"},{"annotations":[75433],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0043456"},{"annotations":[98503],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1990983"}]},"cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving amides.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of nitrogen compound metabolic process","termid":"GO:0051171"},{"relation_name":"regulates","term_name":"amide metabolic process","termid":"GO:0043603"}],"gene_count":47,"genes_by_uniquename":{"SJAG_00169":null,"SJAG_00251":null,"SJAG_00423":null,"SJAG_00579":null,"SJAG_00600":null,"SJAG_00685":null,"SJAG_00690":null,"SJAG_00786":null,"SJAG_00792":null,"SJAG_00892":null,"SJAG_01047":null,"SJAG_01058":null,"SJAG_01079":null,"SJAG_01187":null,"SJAG_01249":null,"SJAG_01436":null,"SJAG_01517":null,"SJAG_01942":null,"SJAG_02026":null,"SJAG_02043":null,"SJAG_02189":null,"SJAG_02285":null,"SJAG_02380":null,"SJAG_02467":null,"SJAG_02592":null,"SJAG_02638":null,"SJAG_02723":null,"SJAG_02812":null,"SJAG_03501":null,"SJAG_03550":null,"SJAG_03677":null,"SJAG_03869":null,"SJAG_04085":null,"SJAG_04130":null,"SJAG_04159":null,"SJAG_04291":null,"SJAG_04312":null,"SJAG_04383":null,"SJAG_04452":null,"SJAG_04544":null,"SJAG_04756":null,"SJAG_04873":null,"SJAG_04890":null,"SJAG_04959":null,"SJAG_05000":null,"SJAG_05314":null,"SJAG_16454":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of amide metabolic process","references_by_uniquename":{"GO_REF:0000104":null,"GO_REF:0000107":null,"PMID:21873635":null},"synonyms":[{"name":"regulation of amide metabolism","type":"exact"},{"name":"regulation of cellular amide metabolic process","type":"exact"}],"termid":"GO:0034248","terms_by_termid":{"GO:0043456":null,"GO:0045901":null,"GO:0045905":null,"GO:0045948":null,"GO:0070131":null,"GO:0070134":null,"GO:0140018":null,"GO:1904689":null,"GO:1905569":null,"GO:1905857":null,"GO:1990611":null,"GO:1990625":null,"GO:1990983":null,"GO:2000765":null,"GO:2000766":null,"GO:2000767":null,"GO:2001211":null}}


id: PBO:0086806
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Putative protein of unknown function; YDL218W transcription is regulated by Azf1p and induced by starvation and aerobic conditions; expression also induced in cells treated with the mycotoxin patulin","termid":"PBO:0086806"}


id: PR:Q9P7M7
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPAP27G11.11c gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q9P7M7"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized protein P27G11.11c (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAP27G11.11c","synonyms":[{"name":"Spom972h-SPAP27G11.11c","type":"exact"}],"termid":"PR:Q9P7M7"}


id: PBO:0004103
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"guanyl-nucleotide exchange factor Vps902 (predicted)","termid":"PBO:0004103"}


id: GO:0005765
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The lipid bilayer surrounding the lysosome and separating its contents from the cell cytoplasm.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"lytic vacuole membrane","termid":"GO:0098852"},{"relation_name":"part_of","term_name":"lysosome","termid":"GO:0005764"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005773"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005737"}],"interesting_parent_ids":["GO:0005773","GO:0005737","GO:0005575"],"is_obsolete":false,"name":"lysosomal membrane","synonyms":[{"name":"lysosome membrane","type":"exact"}],"termid":"GO:0005765"}


id: GO:0010792
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The 5' to 3' exonucleolytic resection of the DNA at the site of the break to form a 3' single-strand DNA overhang that results in the repair of a double strand break via single-strand annealing.","definition_xrefs":["GOC:dph","GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"DNA double-strand break processing","termid":"GO:0000729"},{"relation_name":"part_of","term_name":"double-strand break repair via single-strand annealing","termid":"GO:0045002"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0006281"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0006259"},{"rel_name":"is_a","termid":"GO:0006259"}],"interesting_parent_ids":["GO:0006281","GO:0006259","GO:0008150"],"is_obsolete":false,"name":"DNA double-strand break processing involved in repair via single-strand annealing","termid":"GO:0010792"}


id: GO:0072588
data:
  {"annotated_genes":["SJAG_04754","SJAG_00083","SJAG_00566","SJAG_01234"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[85710,78801,74047,96621],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0031429"}]},"cv_name":"cellular_component","definition":"A ribonucleoprotein complex that contains an RNA of the box H/ACA type and the four core proteins dyskerin, NOP10, NHP2, and GAR1 (human protein nomenclature). RNA pseudouridylation (isomerization of uridine to pseudouridine) is the major, and most likely the ancestral, function of H/ACA RNPs. Pseudouridylation targets include both large and small ribosomal RNAs (rRNAs), and small nuclear RNA (U2 snRNA). In addition to these catalytic H/ACA RNPs, a less abundant but more diverse class of structural H/ACA RNPs exists, which does not have pseudouridylation activity. These include the vertebrate telomerase RNP complex.","definition_xrefs":["GOC:krc","GOC:BHF_telomerase","GOC:vw","PMID:20227365","PMID:17284456","GOC:BHF","GOC:jbu","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"sno(s)RNA-containing ribonucleoprotein complex","termid":"GO:0005732"}],"gene_count":4,"genes_by_uniquename":{"SJAG_00083":null,"SJAG_00566":null,"SJAG_01234":null,"SJAG_04754":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575","GO:0032991"],"is_obsolete":false,"name":"box H/ACA RNP complex","references_by_uniquename":{"GO_REF:0000107":null,"PMID:21873635":null},"synonyms":[{"name":"box H/ACA snoRNP pseudouridylase complex","type":"related"},{"name":"sRNP complex","type":"narrow"}],"termid":"GO:0072588","terms_by_termid":{"GO:0031429":null}}


id: PBO:0082016
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ZW10 interacting kinetochore protein","termid":"PBO:0082016"}


id: PBO:0028910
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_chromatin_organization_during_vegetative_growth","termid":"PBO:0028910"}


id: SO:0000910
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A gene whose predicted amino acid sequence is unsupported by any experimental evidence or by any match with any other known sequence.","direct_ancestors":[{"relation_name":"is_a","term_name":"predicted","termid":"SO:0000732"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"orphan","termid":"SO:0000910"}


id: PBO:0058799
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 7705","termid":"PBO:0058799"}


id: PBO:0002615
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial inheritance GTPase (predicted)","termid":"PBO:0002615"}


id: GO:0030545
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binds to and modulates the activity of a receptor.","definition_xrefs":["GOC:ceb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"molecular function regulator activity","termid":"GO:0098772"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0098772"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0098772","GO:0003674"],"is_obsolete":false,"name":"signaling receptor regulator activity","synonyms":[{"name":"receptor regulator activity","type":"broad"}],"termid":"GO:0030545"}


id: PBO:0031187
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_thiamine_diphosphokinase_activity","termid":"PBO:0031187"}


id: PBO:0062908
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"purinergic receptor P2X 1","termid":"PBO:0062908"}


id: PBO:0002267
data:
  {"annotation_feature_type":"gene","cv_name":"EC numbers","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"3.1.3.2","termid":"PBO:0002267"}


id: PBO:0083811
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Essential RNA-binding component of cleavage and polyadenylation factor; contains five zinc fingers; required for pre-mRNA 3'-end processing and polyadenylation; relocalizes to the cytosol in response to hypoxia","termid":"PBO:0083811"}


id: PBO:0062019
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 2 subfamily L member 13","termid":"PBO:0062019"}


id: SO:0000169
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A DNA sequence in eukaryotic DNA to which RNA polymerase I binds, to begin transcription.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"eukaryotic_promoter","termid":"SO:0002221"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNApol_I_promoter","synonyms":[{"name":"RNA polymerase A promoter","type":"exact"},{"name":"RNApol I promoter","type":"exact"},{"name":"pol I promoter","type":"exact"},{"name":"polymerase I promoter","type":"exact"}],"termid":"SO:0000169"}


id: PR:Q9UT20
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A 3-oxo-5-alpha-steroid 4-dehydrogenase 1 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO00594","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized protein C9.08c (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC9.08c","secondary_identifiers":["UniProtKB:Q9UT20"],"synonyms":[{"name":"Spom972h-SRD5A1","type":"exact"}],"termid":"PR:Q9UT20"}


id: PBO:0068674
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U4 small nuclear 55, pseudogene","termid":"PBO:0068674"}


id: PBO:0058582
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 6715b","termid":"PBO:0058582"}


id: PBO:0017617
data:
  {"annotation_feature_type":"gene","cv_name":"disease_associated","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Charcot-Marie-Tooth disease","termid":"PBO:0017617"}


id: GO:0032550
data:
  {"annotated_genes":["SJAG_04410"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[110808],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1905108"}]},"cv_name":"molecular_function","definition":"Binding to a purine ribonucleoside, a compound consisting of a purine base linked to ribose.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"purine nucleoside binding","termid":"GO:0001883"},{"relation_name":"is_a","term_name":"ribonucleoside binding","termid":"GO:0032549"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04410":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005488"}],"interesting_parent_ids":["GO:0003674","GO:0005488"],"is_obsolete":false,"name":"purine ribonucleoside binding","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0032550","terms_by_termid":{"GO:1905108":null}}


id: GO:0062055
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A regulation of the phtosynthetic light reaction in which the light harvesting antenna complexes transition between photosystems.","definition_xrefs":["PMID:29967049"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of photosynthesis, light reaction","termid":"GO:0042548"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0006091"}],"interesting_parent_ids":["GO:0006091","GO:0008150"],"is_obsolete":false,"name":"photosynthetic state transition","termid":"GO:0062055"}


id: PBO:0030800
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_protein_localization_to_cortical_microtubule_cytoskeleton_during_vegetative_growth","termid":"PBO:0030800"}


id: PBO:0041335
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chromosome 3 open reading frame 14","termid":"PBO:0041335"}


id: PBO:0090069
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cell wall beta-glucosidase Psu1","termid":"PBO:0090069"}


id: SO:0002250
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A CDS region corresponding to a propeptide of a polypeptide.","direct_ancestors":[{"relation_name":"is_a","term_name":"CDS_region","termid":"SO:0000851"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"propeptide_region_of_CDS","synonyms":[{"name":"INSDC_feature:propeptide","type":"exact"},{"name":"propeptide region of CDS","type":"exact"}],"termid":"SO:0002250"}


id: PBO:0002555
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Ypt/Rab-specific guanyl-nucleotide exchange factor (GEF) subunit Ric1","termid":"PBO:0002555"}


id: GO:0046930
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A protein complex providing a discrete opening in a membrane that allows the passage of gases and/or liquids.","definition_xrefs":["ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"membrane protein complex","termid":"GO:0098796"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0005575","GO:0032991"],"is_obsolete":false,"name":"pore complex","synonyms":[{"name":"channel-forming toxin activity","type":"related"},{"name":"pore","type":"exact"},{"name":"pore-forming toxin activity","type":"related"}],"termid":"GO:0046930"}


id: PR:O59783
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPCC320.06 gene.","definition_xrefs":["PRO:DNx","UniProtKB:O59783"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized protein C320.06 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC320.06","synonyms":[{"name":"Spom972h-SPCC320.06","type":"exact"}],"termid":"PR:O59783"}


id: PBO:0038781
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ACVR2B antisense RNA 1","termid":"PBO:0038781"}


id: PATO:0000600
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A width which is relatively large.","definition_xrefs":["PATOC:GVG"],"direct_ancestors":[{"relation_name":"increased_in_magnitude_relative_to","term_name":"normal","termid":"PATO:0000461"},{"relation_name":"is_a","term_name":"increased size","termid":"PATO:0000586"},{"relation_name":"is_a","term_name":"width","termid":"PATO:0000921"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"increased width","synonyms":[{"name":"broad","type":"related"},{"name":"wide","type":"related"},{"name":"wide/broad","type":"related"}],"termid":"PATO:0000600"}


id: GO:1903844
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of cellular response to transforming growth factor beta stimulus.","definition_xrefs":["GO_REF:0000058","GOC:rph","GOC:TermGenie","PMID:22269326","GOC:BHF_miRNA","GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of cellular response to growth factor stimulus","termid":"GO:0090287"},{"relation_name":"regulates","term_name":"cellular response to transforming growth factor beta stimulus","termid":"GO:0071560"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of cellular response to transforming growth factor beta stimulus","synonyms":[{"name":"regulation of cellular response to TGF-beta stimulus","type":"exact"},{"name":"regulation of cellular response to TGFbeta stimulus","type":"exact"}],"termid":"GO:1903844"}


id: PR:Q9USH5
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- pwi1 gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q9USH5"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PWI domain-containing protein C825.05c (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC825.05c","synonyms":[{"name":"Spom972h-pwi1","type":"exact"}],"termid":"PR:Q9USH5"}


id: GO:0036126
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A microtubule-based flagellum (or cilium) that is part of a sperm, a mature male germ cell that develops from a spermatid.","definition_xrefs":["GOC:sart","PMID:8441407","GOC:cilia"],"direct_ancestors":[{"relation_name":"is_a","term_name":"9+2 motile cilium","termid":"GO:0097729"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"sperm flagellum","synonyms":[{"name":"sperm cilium","type":"exact"},{"name":"sperm tail","type":"exact"}],"termid":"GO:0036126"}


id: FYPO:0003509
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A phenotype in which vegetative cell population growth is normal (i.e. indistinguishable from wild type) in a medium containing selenite ions.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal vegetative cell population growth","termid":"FYPO:0001357"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0000003"},{"rel_name":"is_a","termid":"FYPO:0002057"},{"rel_name":"is_a","termid":"FYPO:0002060"},{"rel_name":"is_a","termid":"FYPO:0002058"},{"rel_name":"is_a","termid":"FYPO:0000139"}],"interesting_parent_ids":["FYPO:0000139","FYPO:0002058","FYPO:0000257","FYPO:0002060","FYPO:0000003","FYPO:0002057"],"is_obsolete":false,"name":"normal growth on selenite ion","synonyms":[{"name":"normal cell population growth in presence of selenite ion","type":"exact"},{"name":"normal cell population growth on selenite ion","type":"exact"},{"name":"normal cellular response to selenite ion","type":"related"},{"name":"normal growth on selenite","type":"exact"},{"name":"normal vegetative cell population growth on selenite ion","type":"exact"}],"termid":"FYPO:0003509"}


id: FYPO:0003378
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which the first meiotic nuclear division, in which homologous chromosomes are normally paired and segregated from each other, does not occur.","definition_xrefs":["GO:0007127","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abolished meiosis","termid":"FYPO:0000474"},{"relation_name":"is_a","term_name":"abnormal meiosis I","termid":"FYPO:0003603"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0000631","FYPO:0005447","FYPO:0001985"],"is_obsolete":false,"name":"abolished meiosis I","synonyms":[{"name":"abolished first meiotic nuclear division","type":"exact"},{"name":"absent meiosis I","type":"exact"},{"name":"meiosis I abolished","type":"exact"},{"name":"meiosis I: absent","type":"exact"}],"termid":"FYPO:0003378"}


id: GO:2001252
data:
  {"annotated_genes":["SJAG_02169","SJAG_01679","SJAG_02451","SJAG_03353","SJAG_03681","SJAG_00883","SJAG_01837","SJAG_02990","SJAG_04259","SJAG_03624","SJAG_04597","SJAG_02336","SJAG_03048","SJAG_03126","SJAG_01297","SJAG_00082"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[107190,109443,111024,86400,95059,102572,103568,108971,99300],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1902426"},{"annotations":[89786],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0140499"},{"annotations":[94467],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0031453"},{"annotations":[97803,111784],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1905561"},{"annotations":[111786,97807],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1903380"},{"annotations":[85701,89998],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1902846"},{"annotations":[92724],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0032215"}]},"cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of chromosome organization.","definition_xrefs":["GOC:obol"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of organelle organization","termid":"GO:0010638"},{"relation_name":"is_a","term_name":"regulation of chromosome organization","termid":"GO:0033044"},{"relation_name":"positively_regulates","term_name":"chromosome organization","termid":"GO:0051276"}],"gene_count":16,"genes_by_uniquename":{"SJAG_00082":null,"SJAG_00883":null,"SJAG_01297":null,"SJAG_01679":null,"SJAG_01837":null,"SJAG_02169":null,"SJAG_02336":null,"SJAG_02451":null,"SJAG_02990":null,"SJAG_03048":null,"SJAG_03126":null,"SJAG_03353":null,"SJAG_03624":null,"SJAG_03681":null,"SJAG_04259":null,"SJAG_04597":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of chromosome organization","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"positive regulation of chromosome organisation","type":"exact"},{"name":"positive regulation of chromosome organization and biogenesis","type":"related"},{"name":"positive regulation of maintenance of genome integrity","type":"related"},{"name":"positive regulation of nuclear genome maintenance","type":"related"}],"termid":"GO:2001252","terms_by_termid":{"GO:0031453":null,"GO:0032215":null,"GO:0140499":null,"GO:1902426":null,"GO:1902846":null,"GO:1903380":null,"GO:1905561":null}}


id: FYPO:0004519
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which the observed rate or other catalytic property of a DNA-directed DNA polymerase activity is abnormal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal catalytic activity","termid":"FYPO:0000661"},{"relation_name":"is_a","term_name":"abnormal metabolic process","termid":"FYPO:0000860"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000661"},{"rel_name":"is_a","termid":"FYPO:0000707"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000654"}],"interesting_parent_ids":["FYPO:0000707","FYPO:0000002","FYPO:0001985","FYPO:0000654","FYPO:0000652","FYPO:0005447","FYPO:0000661"],"is_obsolete":false,"name":"abnormal DNA-directed DNA polymerase activity","synonyms":[{"name":"abnormal DNA polymerase activity","type":"broad"}],"termid":"FYPO:0004519"}


id: PBO:0050321
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"heterogeneous nuclear ribonucleoprotein A1 pseudogene 23","termid":"PBO:0050321"}


id: MOD:01514
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"Modifications that have monoisotopic mass differences from their respective origins that are nominally equal (sometimes called isobaric) at a resolution below 0.01 Da.","definition_xrefs":["PubMed:18688235"],"direct_ancestors":[{"relation_name":"is_a","term_name":"modifications with monoisotopic mass differences that are nominally equal at a resolution below 0.1 Da","termid":"MOD:01513"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"modifications with monoisotopic mass differences that are nominally equal at a resolution below 0.01 Da","termid":"MOD:01514"}


id: GO:0102309
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: dTDP-D-oliose + NADP = dTDP-4-dehydro-2,6-dideoxy-D-glucose + NADPH + H+.","definition_xrefs":["PMID:21960454","GOC:pz"],"gene_count":0,"genotype_count":0,"name":"obsolete dTDP-4-oxo-2,6-dideoxy-D-glucose 4-ketoreductase (dTDP-D-oliose producing) activity (obsolete GO:0102309)","secondary_identifiers":["MetaCyc:RXN-12930"],"termid":"GO:0102309"}


id: PBO:0005583
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA (uracil) methyltransferase (predicted)","termid":"PBO:0005583"}


id: PBO:0083405
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Dubious open reading frame; unlikely to encode a functional protein, based on available experimental and comparative sequence data; partially overlaps the dubious ORF YHR032C-A","termid":"PBO:0083405"}


id: GO:0046876
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to 3,4-didehydroretinal, a form of retinal that plays a role in the visual process in freshwater fish and some amphibians analogous to that of all-trans retinal in other vertebrates. 3,4-didehydro-11-cis-retinal combines with an opsin to form cyanopsin (cone) or porphyropsin (rod).","definition_xrefs":["GOC:ai","ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"retinoid binding","termid":"GO:0005501"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0008289"}],"interesting_parent_ids":["GO:0003674","GO:0005488","GO:0008289"],"is_obsolete":false,"name":"3,4-didehydroretinal binding","synonyms":[{"name":"UV-sensitive opsin","type":"narrow"},{"name":"blue-sensitive opsin","type":"narrow"},{"name":"green-sensitive opsin","type":"narrow"},{"name":"long-wave-sensitive opsin","type":"narrow"},{"name":"opsin","type":"narrow"},{"name":"red-sensitive opsin","type":"narrow"},{"name":"short-wave-sensitive opsin","type":"narrow"},{"name":"violet-sensitive opsin","type":"narrow"}],"termid":"GO:0046876"}


id: PBO:0062305
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 5 subfamily P member 2","termid":"PBO:0062305"}


id: GO:0002480
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which an antigen-presenting cell expresses a peptide antigen of exogenous origin on its cell surface in association with an MHC class I protein complex following intracellular transport via a pathway not requiring TAP (transporter associated with antigen processing). The peptide is typically a fragment of a larger exogenous protein which has been degraded within the cell. Class I here refers to classical class I molecules.","definition_xrefs":["PMID:15224093","PMID:15771591","GOC:add","PMID:16181335"],"direct_ancestors":[{"relation_name":"is_a","term_name":"antigen processing and presentation of exogenous peptide antigen via MHC class I","termid":"GO:0042590"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"antigen processing and presentation of exogenous peptide antigen via MHC class I, TAP-independent","synonyms":[{"name":"TAP-independent antigen processing and presentation of exogenous peptide antigen via MHC class I","type":"exact"},{"name":"TAP-independent exogenous peptide antigen processing and presentation via MHC class I","type":"exact"},{"name":"cross presentation","type":"broad"},{"name":"cross-presentation","type":"broad"},{"name":"exogenous peptide antigen processing and presentation via MHC class I, TAP-independent","type":"exact"}],"termid":"GO:0002480"}


id: _global:biotically_interacts_with
data:
  {"annotation_feature_type":"gene","cv_name":"external","definition":"An interaction relationship in which at least one of the partners is an organism and the other is either an organism or an abiotic entity with which the organism interacts.","direct_ancestors":[{"relation_name":"is_a","term_name":"ecologically_related_to","termid":"_global:ecologically_related_to"},{"relation_name":"is_a","term_name":"interacts_with","termid":"_global:interacts_with"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"biotically_interacts_with","secondary_identifiers":["RO:0002437"],"termid":"_global:biotically_interacts_with"}


id: PBO:0058641
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 6770-3","termid":"PBO:0058641"}


id: GO:0072409
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The series of events in which information about a biological process or quality is received and converted into a molecular signal, contributing to a meiotic cell cycle checkpoint.","definition_xrefs":["GOC:mtg_cell_cycle","GOC:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete detection of stimulus involved in meiotic cell cycle checkpoint (obsolete GO:0072409)","synonyms":[{"name":"meiotic cell cycle checkpoint sensor mechanism","type":"related"},{"name":"meiotic cell cycle checkpoint sensor process","type":"related"},{"name":"sensing involved in meiotic cell cycle checkpoint","type":"related"}],"termid":"GO:0072409"}


id: SO:0001103
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A binding site that, in the polypeptide molecule, interacts selectively and non-covalently with zinc ions.","definition_xrefs":["EBIBS:GAR","SO:cb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"polypeptide_metal_contact","termid":"SO:0001092"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"SO:0000839"}],"interesting_parent_ids":["SO:0000839"],"is_obsolete":false,"name":"polypeptide_zinc_ion_contact_site","secondary_identifiers":["BS:00185"],"synonyms":[{"name":"Zn_contact_site","type":"exact"},{"name":"polypeptide zinc ion contact site","type":"exact"}],"termid":"SO:0001103"}


id: PBO:0061907
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 1 subfamily A member 1","termid":"PBO:0061907"}


id: MOD:00854
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-lysine to L-lysinium (protonated L-lysine).","definition_xrefs":["PubMed:18688235"],"direct_ancestors":[{"relation_name":"is_a","term_name":"modified L-lysine residue","termid":"MOD:00912"},{"relation_name":"is_a","term_name":"protonated residue","termid":"MOD:01699"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protonated L-lysine (L-lysinium) residue","termid":"MOD:00854"}


id: PR:O74374
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A phosphoglucomutase-1 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx","PANTHER:PTHR22573:SF5","OMA:SCHPO03429"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"phosphoglucomutase (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC32F12.10","secondary_identifiers":["UniProtKB:O74374"],"synonyms":[{"name":"PGM (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-PGM1","type":"exact"},{"name":"glucose phosphomutase (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:O74374"}


id: GO:0004102
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: acetyl-CoA + choline = acetylcholine + CoA.","definition_xrefs":["RHEA:18821","EC:2.3.1.6"],"direct_ancestors":[{"relation_name":"is_a","term_name":"O-acetyltransferase activity","termid":"GO:0016413"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016746"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016746","GO:0003824","GO:0016740","GO:0003674"],"is_obsolete":false,"name":"choline O-acetyltransferase activity","secondary_identifiers":["MetaCyc:CHOLINE-O-ACETYLTRANSFERASE-RXN","Reactome:R-HSA-264622","KEGG_REACTION:R01023"],"synonyms":[{"name":"CHOACTase activity","type":"related"},{"name":"acetyl-CoA:choline O-acetyltransferase activity","type":"related"},{"name":"choline acetylase activity","type":"related"},{"name":"choline acetyltransferase activity","type":"related"}],"termid":"GO:0004102"}


id: GO:0061330
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which a relatively unspecialized cell acquires specialized features of a Malpighian tubule stellate cell. A Malpighian tubule stellate cell is a specialized epithelial secretory cell that moves chloride ions and water across the tubule epithelium.","definition_xrefs":["GOC:mtg_kidney_jan10","GOC:dph","PMID:19783135"],"direct_ancestors":[{"relation_name":"is_a","term_name":"epithelial cell differentiation","termid":"GO:0030855"},{"relation_name":"part_of","term_name":"Malpighian tubule development","termid":"GO:0072002"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"Malpighian tubule stellate cell differentiation","termid":"GO:0061330"}


id: PR:Q9P7Z9
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- hap2 gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q9P7Z9"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized protein C16C4.20c (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC16C4.20c","synonyms":[{"name":"Spom972h-hap2","type":"exact"}],"termid":"PR:Q9P7Z9"}


id: GO:0018416
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The incorporation of nickel into a 3Fe-2S complex by tris-L-cysteinyl L-cysteine persulfido bis-L-glutamato L-histidino nickel triiron disulfide trioxide.","definition_xrefs":["RESID:AA0292"],"direct_ancestors":[{"relation_name":"is_a","term_name":"iron-sulfur cluster assembly","termid":"GO:0016226"},{"relation_name":"is_a","term_name":"peptidyl-cysteine modification","termid":"GO:0018198"},{"relation_name":"is_a","term_name":"peptidyl-glutamic acid modification","termid":"GO:0018200"},{"relation_name":"is_a","term_name":"peptidyl-histidine modification","termid":"GO:0018202"},{"relation_name":"is_a","term_name":"nickel incorporation into metallo-sulfur cluster","termid":"GO:0018414"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016226"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0044085"}],"interesting_parent_ids":["GO:0044085","GO:0016226","GO:0008150"],"is_obsolete":false,"name":"nickel incorporation into iron-sulfur cluster via tris-L-cysteinyl L-cysteine persulfido bis-L-glutamato L-histidino nickel triiron disulfide trioxide","synonyms":[{"name":"nickel incorporation into iron-sulphur cluster via tris-L-cysteinyl L-cysteine persulphido bis-L-glutamato L-histidino nickel triiron disulphide trioxide","type":"exact"}],"termid":"GO:0018416"}


id: GO:1900474
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that stops, prevents, or reduces the frequency, rate or extent of mating type switching by stopping, preventing, or reducing the frequency, rate or extent of transcription from an RNA polymerase II promoter.","definition_xrefs":["PMID:8625408","PMID:8625409","GOC:TermGenie","GOC:dgf"],"gene_count":0,"genotype_count":0,"name":"obsolete negative regulation of mating type switching by negative regulation of transcription from RNA polymerase II promoter (obsolete GO:1900474)","termid":"GO:1900474"}


id: FYPO:0000419
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the rate, or speed, of mitotic cytokinesis is decreased.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal cytokinesis","termid":"FYPO:0000032"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000032"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000631"}],"interesting_parent_ids":["FYPO:0000631","FYPO:0001985","FYPO:0000002","FYPO:0001320","FYPO:0000032","FYPO:0005447"],"is_obsolete":false,"name":"decreased rate of cytokinesis","synonyms":[{"name":"cytokinesis: decreased rate","type":"related"},{"name":"decreased rate of cytokinesis during mitotic cell cycle","type":"related"},{"name":"decreased rate of cytokinesis during vegetative growth","type":"exact"},{"name":"decreased rate of mitotic cytokinesis","type":"exact"},{"name":"reduced rate of cytokinesis","type":"exact"}],"termid":"FYPO:0000419"}


id: FYPO:0002896
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which transcription occurs to a normal (i.e. indistinguishable from wild type) extent during a cellular response to calcium ions. All genes, or a specific subset of genes, may be measured.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal transcription during vegetative growth","termid":"FYPO:0001855"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000294"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0001312"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0000294","FYPO:0000002","FYPO:0000257","FYPO:0001312"],"is_obsolete":false,"name":"normal transcription during cellular response to calcium ion","synonyms":[{"name":"normal transcription during cellular response to calcium","type":"exact"},{"name":"normal transcription during cellular response to calcium ion during mitotic cell cycle","type":"related"},{"name":"normal transcription during cellular response to calcium ion during vegetative growth","type":"exact"},{"name":"normal transcription in response to calcium","type":"exact"}],"termid":"FYPO:0002896"}


id: GO:1903513
data:
  {"annotated_genes":["SJAG_03345","SJAG_00530"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[77750,74868],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0030970"}]},"cv_name":"biological_process","definition":"The directed movement of substances from endoplasmic reticulum to cytosol.","definition_xrefs":["GO_REF:0000076","GOC:mtg_cardiac_conduct_nov11","GOC:TermGenie","GOC:BHF","PMID:16402920","GOC:rl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"intracellular transport","termid":"GO:0046907"}],"gene_count":2,"genes_by_uniquename":{"SJAG_00530":null,"SJAG_03345":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0051179"}],"interesting_parent_ids":["GO:0051179","GO:0006810","GO:0008150"],"is_obsolete":false,"name":"endoplasmic reticulum to cytosol transport","references_by_uniquename":{"PMID:21873635":null},"synonyms":[{"name":"ER to cytosol transport","type":"exact"}],"termid":"GO:1903513","terms_by_termid":{"GO:0030970":null}}


id: PBO:0002421
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Rho family GTPase Rho1","termid":"PBO:0002421"}


id: PBO:0040413
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ATPase H+ transporting V0 subunit a4","termid":"PBO:0040413"}


id: GO:0008431
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a vitamin E, tocopherol, which includes a series of eight structurally similar compounds. Alpha-tocopherol is the most active form in humans and is a powerful biological antioxidant.","definition_xrefs":["ISBN:0721662544"],"direct_ancestors":[{"relation_name":"is_a","term_name":"vitamin binding","termid":"GO:0019842"},{"relation_name":"is_a","term_name":"organic cyclic compound binding","termid":"GO:0097159"},{"relation_name":"is_a","term_name":"heterocyclic compound binding","termid":"GO:1901363"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0005488"],"is_obsolete":false,"name":"vitamin E binding","synonyms":[{"name":"alpha-tocopherol binding","type":"narrow"},{"name":"tocopherol binding","type":"exact"}],"termid":"GO:0008431"}


id: PR:O42663
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPAC27D7.09c gene.","definition_xrefs":["UniProtKB:O42663","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized but2-like protein C27D7.09c (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC27D7.09c","synonyms":[{"name":"Spom972h-SPAC27D7.09c","type":"exact"}],"termid":"PR:O42663"}


id: PBO:0042654
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CEA cell adhesion molecule 3","termid":"PBO:0042654"}


id: PBO:0055867
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"leucine rich pentatricopeptide repeat containing","termid":"PBO:0055867"}


id: PBO:0075813
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SSBP3 pseudogene 2","termid":"PBO:0075813"}


id: PBO:0045243
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DnaJ heat shock protein family (Hsp40) member C22","termid":"PBO:0045243"}


id: PBO:0088383
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CCR4-Not complex RNA-binding protein subunit 9","termid":"PBO:0088383"}


id: PBO:0041018
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"BPI fold containing family B member 1","termid":"PBO:0041018"}


id: FYPO:0000044
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which negative regulation of transcription by glucose (glucose repression) is abnormal. For example, specific genes that are normally not transcribed in the presence of glucose may be transcribed in the mutant.","definition_xrefs":["GO:0045014","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal negative regulation of transcription during vegetative growth","termid":"FYPO:0000624"},{"relation_name":"is_a","term_name":"abnormal cellular response to nutrient","termid":"FYPO:0001484"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0006551"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000298"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0000298","FYPO:0001985","FYPO:0005447","FYPO:0006551","FYPO:0001320"],"is_obsolete":false,"name":"abnormal negative regulation of transcription by glucose","secondary_identifiers":["FYPO:0000210"],"synonyms":[{"name":"abnormal glucose repression","type":"exact"},{"name":"abnormal glucose repression during vegetative growth","type":"exact"},{"name":"abnormal negative regulation of transcription by glucose during mitotic cell cycle","type":"related"},{"name":"abnormal negative regulation of transcription by glucose during vegetative growth","type":"exact"},{"name":"glucose repression defects","type":"exact"},{"name":"glucose-insensitive transcription","type":"related"}],"termid":"FYPO:0000044"}


id: PBO:0038796
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ADAM metallopeptidase domain 2","termid":"PBO:0038796"}


id: PBO:0002861
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial ribosomal protein subunit Mrps9 (predicted)","termid":"PBO:0002861"}


id: PBO:0076042
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"serine/threonine kinase 39","termid":"PBO:0076042"}


id: PBO:0058428
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 4798","termid":"PBO:0058428"}


id: PBO:0090188
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"vacuolar sorting protein Vps68","termid":"PBO:0090188"}


id: PBO:0041102
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"basigin (Ok blood group)","termid":"PBO:0041102"}


id: PBO:0029594
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_protein_localization_to_plasma_membrane_during_vegetative_growth","termid":"PBO:0029594"}


id: GO:0007284
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The mitotic divisions of the primary spermatogonial cell (a primordial male germ cell) to form secondary spermatogonia (primary spermatocytes).","definition_xrefs":["GOC:bf","GOC:pr","ISBN:0879694238"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular process involved in reproduction in multicellular organism","termid":"GO:0022412"},{"relation_name":"is_a","term_name":"cell division","termid":"GO:0051301"},{"relation_name":"part_of","term_name":"spermatogenesis","termid":"GO:0007283"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"spermatogonial cell division","synonyms":[{"name":"spermatogonium division","type":"exact"}],"termid":"GO:0007284"}


id: PBO:0002175
data:
  {"annotation_feature_type":"gene","cv_name":"misc","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"accumulation and persistence of Sfr1 foci in rhp54 delta cells","termid":"PBO:0002175"}


id: PBO:0066171
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RBIS pseudogene 4","termid":"PBO:0066171"}


id: GO:0042203
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of toluene, a volatile monoaromatic hydrocarbon found in crude petroleum and petroleum products.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"toluene metabolic process","termid":"GO:0018970"},{"relation_name":"is_a","term_name":"xenobiotic catabolic process","termid":"GO:0042178"},{"relation_name":"is_a","term_name":"toluene-containing compound catabolic process","termid":"GO:0072491"},{"relation_name":"is_a","term_name":"hydrocarbon catabolic process","termid":"GO:0120253"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044248"}],"interesting_parent_ids":["GO:0044248","GO:0008150"],"is_obsolete":false,"name":"toluene catabolic process","synonyms":[{"name":"toluene breakdown","type":"exact"},{"name":"toluene catabolism","type":"exact"},{"name":"toluene degradation","type":"exact"}],"termid":"GO:0042203"}


id: PBO:0041257
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chromosome 1 open reading frame 216","termid":"PBO:0041257"}


id: GO:0004229
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the cleavage of gelatin types I and V and collagen types IV and V.","definition_xrefs":["GOC:curators"],"gene_count":0,"genotype_count":0,"name":"obsolete gelatinase B activity (obsolete GO:0004229)","synonyms":[{"name":"92-kDa gelatinase activity","type":"narrow"},{"name":"92-kDa type IV collagenase activity","type":"narrow"},{"name":"95 kDa type IV collagenase/gelatinase activity","type":"related"},{"name":"MMP 9","type":"related"},{"name":"MMP-9","type":"exact"},{"name":"collagenase IV","type":"related"},{"name":"collagenase type IV","type":"related"},{"name":"gelatinase B activity","type":"exact"},{"name":"gelatinase MMP 9","type":"related"},{"name":"macrophage gelatinase activity","type":"narrow"},{"name":"matrix metalloproteinase 9 activity","type":"related"},{"name":"type IV collagen metalloproteinase","type":"broad"},{"name":"type V collagenase activity","type":"related"}],"termid":"GO:0004229"}


id: PBO:0041457
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"C10orf71 antisense RNA 1","termid":"PBO:0041457"}


id: PR:O74310
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPBC15D4.05 gene.","definition_xrefs":["PRO:DNx","UniProtKB:O74310"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"COBW domain-containing protein C15D4.05 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC15D4.05","synonyms":[{"name":"Spom972h-SPBC15D4.05","type":"exact"}],"termid":"PR:O74310"}


id: PR:P87304
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"An acyl-coenzyme A thioesterase 13 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO03842","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"esterase C31F10.02 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC31F10.02","secondary_identifiers":["UniProtKB:P87304"],"synonyms":[{"name":"Spom972h-ACOT13","type":"exact"}],"termid":"PR:P87304"}


id: GO:0007118
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Growth at the tip of a bud, in a cell that reproduces by budding.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"budding cell bud growth","termid":"GO:0007117"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"budding cell apical bud growth","synonyms":[{"name":"apical bud growth","type":"broad"}],"termid":"GO:0007118"}


id: PBO:0002398
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial serine-tRNA ligase (predicted)","termid":"PBO:0002398"}


id: FYPO:0003615
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which generation of double-strand breaks at defined hotspots throughout the genome during meiosis I is decreased.","definition_xrefs":["GO:0042138","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal meiotic recombination","termid":"FYPO:0000008"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000293"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0000631","FYPO:0000002","FYPO:0001985","FYPO:0000293"],"is_obsolete":false,"name":"decreased meiotic DNA double-strand break formation","synonyms":[{"name":"reduced meiotic DNA double-strand break formation","type":"exact"}],"termid":"FYPO:0003615"}


id: FYPO:0002591
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which histone phosphorylation is abnormal. All histone phosphorylation may be affected, or phosphorylation of specific sites on specific histones may be altered.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal histone modification during vegetative growth","termid":"FYPO:0000330"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0002494"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0002274"}],"interesting_parent_ids":["FYPO:0002494","FYPO:0001985","FYPO:0005447","FYPO:0001320","FYPO:0000002","FYPO:0002274"],"is_obsolete":false,"name":"abnormal histone phosphorylation during vegetative growth","synonyms":[{"name":"abnormal histone phosphorylation during mitotic cell cycle","type":"related"}],"termid":"FYPO:0002591"}


id: PBO:0040220
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"alpha tubulin acetyltransferase 1","termid":"PBO:0040220"}


id: RO:0002243
data:
  {"annotation_feature_type":"gene","cv_name":"relationship","definition":"A broad relationship between an exposure event or process and the course takes from the source to the target.","direct_ancestors":[{"relation_name":"is_a","term_name":"related_via_exposure_to","termid":"RO:0002244"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"has_exposure_transport_path","termid":"RO:0002243"}


id: PBO:0043612
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"COMM domain containing 4","termid":"PBO:0043612"}


id: GO:0006043
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of glucosamine (2-amino-2-deoxyglucopyranose), an aminodeoxysugar that occurs in combined form in chitin.","definition_xrefs":["GOC:jl","ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"glucosamine metabolic process","termid":"GO:0006041"},{"relation_name":"is_a","term_name":"glucosamine-containing compound catabolic process","termid":"GO:1901072"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"glucosamine catabolic process","secondary_identifiers":["MetaCyc:GLUAMCAT-PWY"],"synonyms":[{"name":"chitosamine catabolic process","type":"exact"},{"name":"chitosamine catabolism","type":"exact"},{"name":"glucosamine breakdown","type":"exact"},{"name":"glucosamine catabolism","type":"exact"},{"name":"glucosamine degradation","type":"exact"}],"termid":"GO:0006043"}


id: FYPO:0003025
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which homologous chromosome pairing during meiosis (synapsis) is decreased. Synapsis is the process in which the side by side pairing and physical juxtaposition of homologous chromosomes is established and maintained. Pairing may be assayed globally or at one or more specific loci.","definition_xrefs":["PomBase:mah","GO:0007129"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal cellular process","termid":"FYPO:0000628"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0005447","FYPO:0001985"],"is_obsolete":false,"name":"decreased homologous chromosome pairing","synonyms":[{"name":"decreased homologous chromosome pairing at meiosis","type":"exact"},{"name":"decreased synapsis","type":"exact"},{"name":"reduced homologous chromosome pairing","type":"exact"}],"termid":"FYPO:0003025"}


id: PBO:0054166
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1537","termid":"PBO:0054166"}


id: PBO:0013453
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cytochrome c oxidase assembly protein Cox1102/ mitochondrial ribosomal protein Rsm2202, fusion protein (predicted)","termid":"PBO:0013453"}


id: PBO:0057504
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 622","termid":"PBO:0057504"}


id: GO:0004202
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. (Was not defined before being made obsolete).","definition_xrefs":["GOC:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete caspase-2 activity (obsolete GO:0004202)","synonyms":[{"name":"caspase-2 activity","type":"exact"}],"termid":"GO:0004202"}


id: PBO:0044266
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"C-X-C motif chemokine ligand 5","termid":"PBO:0044266"}


id: FYPO:0005177
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the modification of a wobble base uridine residue in a tRNA to 2-thiouridine is abolished.","definition_xrefs":["GO:0003143","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abolished RNA modification","termid":"FYPO:0000371"},{"relation_name":"is_a","term_name":"abnormal tRNA modification","termid":"FYPO:0001765"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000294"},{"rel_name":"is_a","termid":"FYPO:0006551"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0005447","FYPO:0001985","FYPO:0001320","FYPO:0000294","FYPO:0006551"],"is_obsolete":false,"name":"abolished tRNA wobble position uridine thiolation","synonyms":[{"name":"abolished tRNA wobble position uridine thiolation during mitotic cell cycle","type":"related"},{"name":"abolished tRNA wobble position uridine thiolation during vegetative growth","type":"exact"},{"name":"abolished wobble position s2U biosynthesis","type":"exact"},{"name":"tRNA wobble position uridine thiolation abolished","type":"exact"}],"termid":"FYPO:0005177"}


id: PATO:0005009
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A 3-D shape inhering in a bearer by virtue of the bearer's having an entity in the form of a molar tooth.","definition_xrefs":["PATOC:WD"],"direct_ancestors":[{"relation_name":"is_a","term_name":"3-D shape","termid":"PATO:0002266"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"molariform","termid":"PATO:0005009"}


id: GO:0006627
data:
  {"annotated_genes":["SJAG_02809","SJAG_02397","SJAG_01004","SJAG_03648","SJAG_04641","SJAG_04533"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[70151,75931,77101,78544,78757,97638],"is_not":false,"summary":null,"term":"GO:0006627"}]},"cv_name":"biological_process","definition":"The cleavage of peptide bonds in proteins, usually near the N terminus, contributing to the process of import into the mitochondrion. Several different peptidases mediate cleavage of proteins destined for different mitochondrial compartments.","definition_xrefs":["PMID:12191769","GOC:mcc"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mitochondrial protein processing","termid":"GO:0034982"},{"relation_name":"part_of","term_name":"protein targeting to mitochondrion","termid":"GO:0006626"}],"gene_count":6,"genes_by_uniquename":{"SJAG_01004":null,"SJAG_02397":null,"SJAG_02809":null,"SJAG_03648":null,"SJAG_04533":null,"SJAG_04641":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0006605"},{"rel_name":"is_a","termid":"GO:0051604"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0051604","GO:0006605","GO:0010467","GO:0008150"],"is_obsolete":false,"name":"protein processing involved in protein targeting to mitochondrion","references_by_uniquename":{"GO_REF:0000107":null,"PMID:21873635":null},"synonyms":[{"name":"mitochondrial processing","type":"broad"},{"name":"mitochondrial protein processing during import","type":"related"}],"termid":"GO:0006627","terms_by_termid":{"GO:0006627":null}}


id: GO:1990676
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The lipid bilayer surrounding any of the thin, flattened compartments that form the trans portion of the Golgi complex.","definition_xrefs":["GOC:bhm","PMID:16038056","PMID:24119662"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Golgi cisterna membrane","termid":"GO:0032580"},{"relation_name":"part_of","term_name":"Golgi trans cisterna","termid":"GO:0000138"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005794"}],"interesting_parent_ids":["GO:0005575","GO:0005794","GO:0005737"],"is_obsolete":false,"name":"Golgi trans cisterna membrane","synonyms":[{"name":"trans-Golgi cisterna membrane","type":"exact"}],"termid":"GO:1990676"}


id: GO:0051206
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving silicates, the salts of silicic acids. Silicates are usually composed of silicon and oxygen (Si[x]O[y]), one or more metals, and possibly hydrogen. Types of silicate include unisilicates, metasilicates and hydrous silicates.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxoacid metabolic process","termid":"GO:0043436"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0044281","GO:0008150"],"is_obsolete":false,"name":"silicate metabolic process","synonyms":[{"name":"silicate metabolism","type":"exact"}],"termid":"GO:0051206"}


id: FYPO:0002061
data:
  {"alleles_by_uniquename":{"SJAG_02409:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_02409","name":"stc1delta","uniquename":"SJAG_02409:allele-1"},"SJAG_02594:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_02594","name":"arb1delta","uniquename":"SJAG_02594:allele-1"},"SJAG_02621:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_02621","name":"ago1delta","uniquename":"SJAG_02621:allele-1"},"SJAG_03118:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_03118","name":"leo1delta","uniquename":"SJAG_03118:allele-1"},"SJAG_03356:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_03356","name":"rdp1delta","uniquename":"SJAG_03356:allele-1"},"SJAG_03689:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_03689","name":"dcr1delta","uniquename":"SJAG_03689:allele-1"},"SJAG_03916:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_03916","name":"chp1delta","uniquename":"SJAG_03916:allele-1"},"SJAG_04061:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_04061","name":"arb2delta","uniquename":"SJAG_04061:allele-1"},"SJAG_04574:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_04574","name":"clr4delta","uniquename":"SJAG_04574:allele-1"}},"annotation_feature_type":"genotype","cv_annotations":{"multi_locus_phenotype":[{"annotations":[114264],"is_not":false,"summary":null,"term":"FYPO:0002061"}],"single_locus_phenotype":[{"annotations":[114246,114247,114248,114249,114250,114251,114252,114263],"is_not":false,"summary":null,"term":"FYPO:0002061"}]},"cv_name":"fission_yeast_phenotype","definition":"A cell population phenotype in which all cells in the population are inviable in the vegetative growth phase of the life cycle.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"inviable cell 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leo1delta","display_uniquename":"clr4delta__leo1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04574:allele-1","expression":"Null"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_03118:allele-1","expression":"Null"}]}]},"dcr1delta":{"display_name":"dcr1delta","display_uniquename":"dcr1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03689:allele-1","expression":"Null"}]}]},"rdp1delta":{"display_name":"rdp1delta","display_uniquename":"rdp1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03356:allele-1","expression":"Null"}]}]},"stc1delta":{"display_name":"stc1delta","display_uniquename":"stc1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_02409:allele-1","expression":"Null"}]}]}},"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000003"},{"rel_name":"is_a","termid":"FYPO:0002059"},{"rel_name":"is_a","termid":"FYPO:0002057"}],"interesting_parent_ids":["FYPO:0000003","FYPO:0002057","FYPO:0002059"],"is_obsolete":false,"multi_locus_annotated_genes":["SJAG_03118","SJAG_04574"],"name":"inviable vegetative cell population","references_by_uniquename":{"PMID:35226668":null},"single_locus_annotated_genes":["SJAG_04574","SJAG_02621","SJAG_03916","SJAG_02409","SJAG_04061","SJAG_02594","SJAG_03356","SJAG_03689"],"single_locus_genotype_uniquenames":["clr4delta","ago1delta","stc1delta","arb2delta","rdp1delta","dcr1delta","arb1delta","chp1delta"],"synonyms":[{"name":"essential in vegetative cell population","type":"related"},{"name":"inviable","type":"broad"},{"name":"inviable cell population during vegetative growth","type":"exact"},{"name":"inviable population","type":"broad"},{"name":"inviable vegetative cell population during mitotic cell cycle","type":"related"},{"name":"lethal","type":"broad"},{"name":"lethal in vegetative cell population","type":"exact"},{"name":"lethal population","type":"broad"}],"termid":"FYPO:0002061","terms_by_termid":{"FYECO:0000005":null,"FYECO:0000162":null,"FYPO:0002061":null}}


id: PBO:0109122
data:
  {"annotation_feature_type":"gene","cv_name":"name_description","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Glycoside Hydrolase family Sixteen","termid":"PBO:0109122"}


id: FYPO:0004539
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which a cell contains more, and shorter, cytoplasmic microtubules than normal during interphase of the mitotic cell cycle.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"microtubules present in increased numbers","termid":"FYPO:0004538"},{"relation_name":"is_a","term_name":"short interphase microtubules","termid":"FYPO:0006103"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0002399"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0000054"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0000054","FYPO:0000002","FYPO:0002399","FYPO:0001985","FYPO:0001320","FYPO:0005447"],"is_obsolete":false,"name":"short interphase microtubules present in increased numbers","synonyms":[{"name":"broken interphase microtubules","type":"related"},{"name":"short cytoplasmic microtubules present in increased numbers during interphase of mitotic cell cycle","type":"exact"},{"name":"short cytoplasmic microtubules present in increased numbers during mitotic interphase","type":"exact"},{"name":"short fragmented interphase microtubules","type":"related"},{"name":"short interphase cytoplasmic microtubules present in increased numbers","type":"exact"},{"name":"short interphase microtubules present in greater numbers","type":"exact"},{"name":"short interphase microtubules present in increased numbers during vegetative growth","type":"exact"}],"termid":"FYPO:0004539"}


id: GO:0021870
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which a neuroblast acquires specialized structural and/or functional features of a Cajal-Retzius cell, one of a transient population of pioneering neurons in the cerebral cortex. These cells are slender bipolar cells of the developing marginal zone. One feature of these cells in mammals is that they express the Reelin gene.","definition_xrefs":["GOC:dph","GOC:jid","GOC:cls","GO_REF:0000021","GOC:dgh"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cerebral cortex neuron differentiation","termid":"GO:0021895"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"Cajal-Retzius cell differentiation","termid":"GO:0021870"}


id: PATO:0002039
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A concave quality inhering in a bearer by virtue of the bearer's curving inward on both sides or surfaces.","definition_xrefs":["PATOC:GVG"],"direct_ancestors":[{"relation_name":"is_a","term_name":"concave","termid":"PATO:0001857"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"biconcave","termid":"PATO:0002039"}


id: PBO:0090950
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"U3 snoRNP-associated protein Utp7","termid":"PBO:0090950"}


id: PBO:0044601
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DCAF8 divergent transcript","termid":"PBO:0044601"}


id: PBO:0049598
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"H3 histone pseudogene 1","termid":"PBO:0049598"}


id: GO:0040013
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of locomotion of a cell or organism.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of locomotion","termid":"GO:0040012"},{"relation_name":"is_a","term_name":"negative regulation of biological process","termid":"GO:0048519"},{"relation_name":"negatively_regulates","term_name":"locomotion","termid":"GO:0040011"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of locomotion","synonyms":[{"name":"down regulation of locomotion","type":"exact"},{"name":"down-regulation of locomotion","type":"exact"},{"name":"downregulation of locomotion","type":"exact"},{"name":"inhibition of locomotion","type":"narrow"}],"termid":"GO:0040013"}


id: FYPO:0000666
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which the observed rate of a peptidase activity is abnormal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal catalytic activity","termid":"FYPO:0000661"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000661"},{"rel_name":"is_a","termid":"FYPO:0000707"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0000654"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000652","FYPO:0000654","FYPO:0000707","FYPO:0000661"],"is_obsolete":false,"name":"abnormal peptidase activity","synonyms":[{"name":"abnormal protease activity","type":"exact"}],"termid":"FYPO:0000666"}


id: GO:0018491
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 2-oxobutanoate + CoA + oxidized ferredoxin = propanoyl-CoA + CO2 + reduced ferredoxin.","definition_xrefs":["GOC:curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor","termid":"GO:0016620"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016491"],"is_obsolete":false,"name":"2-oxobutyrate synthase activity","secondary_identifiers":["MetaCyc:2-OXOBUTYRATE-SYNTHASE-RXN","UM-BBD_reactionID:r0358","RHEA:32135"],"synonyms":[{"name":"2-ketobutyrate synthase activity","type":"exact"},{"name":"2-oxobutanoate:ferredoxin 2-oxidoreductase (CoA-propionylating)","type":"exact"},{"name":"2-oxobutyrate-ferredoxin oxidoreductase activity","type":"exact"},{"name":"alpha-ketobutyrate synthase activity","type":"exact"},{"name":"alpha-ketobutyrate-ferredoxin oxidoreductase activity","type":"exact"}],"termid":"GO:0018491"}


id: PBO:0091543
data:
  {"annotation_feature_type":"gene","cv_name":"name_description","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Alpha-Amylase Homolog","termid":"PBO:0091543"}


id: FYPO:0002198
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"OBSOLETE. A cell population phenotype in which all cells in the population are viable but have abnormal cell shape, in the vegetative growth phase of the life cycle.","definition_xrefs":["PomBase:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete viable vegetative cell population with abnormal cell shape (obsolete FYPO:0002198)","synonyms":[{"name":"viable, abnormally shaped vegetative cell population","type":"exact"}],"termid":"FYPO:0002198"}


id: GO:0120081
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that activates or increases the frequency, rate or extent of microfilament motor activity.","definition_xrefs":["GOC:mah","PMID:20705471","PMID:8621557"],"gene_count":0,"genotype_count":0,"name":"obsolete positive regulation of microfilament motor activity (obsolete GO:0120081)","synonyms":[{"name":"activation of actin-activated ATPase activity","type":"narrow"},{"name":"activation of actin-dependent ATPase activity","type":"narrow"},{"name":"positive regulation of actin filament motor activity","type":"exact"},{"name":"positive regulation of actin-activated ATPase activity","type":"related"},{"name":"positive regulation of actin-dependent ATPase activity","type":"related"},{"name":"positive regulation of actin-filament motor activity","type":"exact"},{"name":"positive regulation of muscle motor activity","type":"narrow"},{"name":"positive regulation of myosin ATPase activity","type":"broad"},{"name":"upregulation of actin-dependent ATPase activity","type":"narrow"}],"termid":"GO:0120081"}


id: PBO:0109364
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"testis expressed transcript, Y-linked 2B","termid":"PBO:0109364"}


id: GO:1990890
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a netrin receptor.","definition_xrefs":["GOC:kmv","PMID:8861902","PMID:9126742"],"direct_ancestors":[{"relation_name":"is_a","term_name":"signaling receptor binding","termid":"GO:0005102"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005515"},{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0005515","GO:0005488"],"is_obsolete":false,"name":"netrin receptor binding","termid":"GO:1990890"}


id: PBO:0067126
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 172, pseudogene","termid":"PBO:0067126"}


id: PATO:0002205
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A quality inhering in a bearer by virtue of the bearer's ability to hold an electrical charge.","definition_xrefs":["Wikipedia:Wikipedia"],"direct_ancestors":[{"relation_name":"is_a","term_name":"molecular quality","termid":"PATO:0002182"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"capacitance","termid":"PATO:0002205"}


id: PBO:0005623
data:
  {"annotation_feature_type":"gene","cv_name":"EC numbers","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"2.5.1.9","termid":"PBO:0005623"}


id: GO:0034698
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a gonadotropin stimulus.","definition_xrefs":["GOC:vk","GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to hormone","termid":"GO:0009725"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"response to gonadotropin","synonyms":[{"name":"response to gonadotropin stimulus","type":"exact"}],"termid":"GO:0034698"}


id: GO:1902525
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of protein monoubiquitination.","definition_xrefs":["PMID:21931591","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of protein ubiquitination","termid":"GO:0031396"},{"relation_name":"regulates","term_name":"protein monoubiquitination","termid":"GO:0006513"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0070647"}],"interesting_parent_ids":["GO:0070647","GO:0008150"],"is_obsolete":false,"name":"regulation of protein monoubiquitination","synonyms":[{"name":"regulation of protein monoubiquitinylation","type":"exact"},{"name":"regulation of protein monoubiquitylation","type":"exact"}],"termid":"GO:1902525"}


id: FYPO:0002105
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell morphology phenotype observed in the vegetative growth phase of the life cycle in which a cell has a normal shape but is inviable.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"has_part","term_name":"normal vegetative cell shape","termid":"FYPO:0001125"},{"relation_name":"is_a","term_name":"normal vegetative cell shape","termid":"FYPO:0001125"},{"relation_name":"is_a","term_name":"inviable vegetative cell with normal cell morphology","termid":"FYPO:0002199"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0000004"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001312"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"has_part","termid":"FYPO:0000257"},{"rel_name":"has_part","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0000257","FYPO:0000004","FYPO:0001320","FYPO:0001312"],"is_obsolete":false,"name":"inviable vegetative cell with normal cell shape","synonyms":[{"name":"inviable cell with normal cell shape during vegetative growth","type":"exact"},{"name":"inviable vegetative cell with normal cell shape during mitotic cell cycle","type":"related"},{"name":"lethal; vegetative cell with normal cell shape","type":"exact"}],"termid":"FYPO:0002105"}


id: PBO:0078340
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-Glu (anticodon CTC) 6-1","termid":"PBO:0078340"}


id: PBO:0018035
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sodium ion transmembrane transporter (predicted)","termid":"PBO:0018035"}


id: GO:1903216
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of protein processing involved in protein targeting to mitochondrion.","definition_xrefs":["GOC:PARL","PMID:21370995","GOC:bf","GOC:TermGenie","GO_REF:0000058"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of protein processing","termid":"GO:0070613"},{"relation_name":"regulates","term_name":"protein processing involved in protein targeting to mitochondrion","termid":"GO:0006627"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0051604"},{"rel_name":"regulates","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0051604","GO:0010467"],"is_obsolete":false,"name":"regulation of protein processing involved in protein targeting to mitochondrion","synonyms":[{"name":"regulation of mitochondrial processing","type":"broad"},{"name":"regulation of mitochondrial protein processing during import","type":"related"}],"termid":"GO:1903216"}


id: GO:0008228
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which a microorganism (or other particulate material) is rendered more susceptible to phagocytosis by coating with an opsonin, a blood serum protein such as a complement component or antibody.","definition_xrefs":["GOC:mah","ISBN:0781735149","ISBN:0198506732","ISBN:068340007X","GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"immune effector process","termid":"GO:0002252"},{"relation_name":"positively_regulates","term_name":"phagocytosis, recognition","termid":"GO:0006910"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"opsonization","secondary_identifiers":["Wikipedia:Opsonin"],"termid":"GO:0008228"}


id: PBO:0076280
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"synaptonemal complex protein 3","termid":"PBO:0076280"}


id: GO:0019540
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of a siderophore from other compounds, including catechol. Catechol is one of the three major chemical groups incorporated into siderophore structures with hydroxamate and a-hydroxycarboxylate, each having a high selectivity for iron(3+).","definition_xrefs":["PMID:20376388"],"direct_ancestors":[{"relation_name":"is_a","term_name":"catechol-containing compound biosynthetic process","termid":"GO:0009713"},{"relation_name":"is_a","term_name":"siderophore biosynthetic process","termid":"GO:0019290"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0019748"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0019748","GO:0008150"],"is_obsolete":false,"name":"catechol-containing siderophore biosynthetic process","secondary_identifiers":["GO:0031189","GO:0031190"],"termid":"GO:0019540"}


id: PBO:0080976
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger and BTB domain containing 11","termid":"PBO:0080976"}


id: GO:0070354
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A protein complex that contains the zinc finger transcription factor GATA2, the LIM domain protein Lmo2 (RBTN2), the basic helix-loop-helix protein TAL1 and its binding partner TCF3. The complex is involved transcriptional regulation in hematopoiesis.","definition_xrefs":["PMID:7568177"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nuclear protein-containing complex","termid":"GO:0140513"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005634"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0005575","GO:0032991","GO:0005634"],"is_obsolete":false,"name":"GATA2-TAL1-TCF3-Lmo2 complex","termid":"GO:0070354"}


id: PBO:0028491
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_mitotic_spindle_midzone_assembly","termid":"PBO:0028491"}


id: GO:0050558
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: alpha-maltose = beta-maltose.","definition_xrefs":["EC:5.1.3.21","RHEA:21228"],"direct_ancestors":[{"relation_name":"is_a","term_name":"racemase and epimerase activity, acting on carbohydrates and derivatives","termid":"GO:0016857"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016853"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003824","GO:0016853","GO:0003674"],"is_obsolete":false,"name":"maltose epimerase activity","secondary_identifiers":["KEGG_REACTION:R07319","MetaCyc:5.1.3.21-RXN"],"synonyms":[{"name":"maltose 1-epimerase activity","type":"related"}],"termid":"GO:0050558"}


id: PBO:0072856
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"store-operated calcium entry associated regulatory factor","termid":"PBO:0072856"}


id: PBO:0075038
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nucleolar RNA, C/D box 116-1","termid":"PBO:0075038"}


id: GO:0150088
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A single axon terminal bouton making contact onto two or more dendritic spines protruding from multiple dendrites.","definition_xrefs":["PMID:24487234","PMID:7482800","PMID:22028887","GOC:aruk","PMID:10586883","GOC:bc","PMID:11248111","PMID:8366344"],"direct_ancestors":[{"relation_name":"is_a","term_name":"multiple synapse bouton","termid":"GO:0150086"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"multiple synapse bouton, contacting multiple dendrites","synonyms":[{"name":"MSB2","type":"exact"},{"name":"type 2 multi-synapse bouton","type":"exact"},{"name":"type 2 multi-synaptic bouton","type":"exact"},{"name":"type 2 multiple spine synapse bouton","type":"exact"},{"name":"type 2 multiple-synapse bouton","type":"exact"},{"name":"type 2 multisynapse bouton","type":"exact"},{"name":"type 2 multisynaptic bouton","type":"exact"}],"termid":"GO:0150088"}


id: GO:0008551
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + Cd2+(in) = ADP + phosphate + Cd2+(out).","definition_xrefs":["PMID:17326661"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cadmium ion transmembrane transporter activity","termid":"GO:0015086"},{"relation_name":"is_a","term_name":"P-type ion transporter activity","termid":"GO:0015662"},{"relation_name":"is_a","term_name":"ATPase-coupled monoatomic cation transmembrane transporter activity","termid":"GO:0019829"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0005215","GO:0022857","GO:0003674"],"is_obsolete":false,"name":"P-type cadmium transporter activity","secondary_identifiers":["EC:7.2.2.21","RHEA:12132","GO:0008561","MetaCyc:3.6.3.3-RXN"],"synonyms":[{"name":"Cd(2+)-exporting ATPase activity","type":"related"},{"name":"Cd2+-exporting ATPase activity","type":"related"},{"name":"cadmium exporting ATPase activity","type":"exact"},{"name":"cadmium transmembrane transporter activity, phosphorylative mechanism","type":"related"},{"name":"cadmium-exporting ATPase activity","type":"narrow"},{"name":"cadmium-translocating P-type ATPase activity","type":"exact"}],"termid":"GO:0008551"}


id: PBO:0063395
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PDCD6IP pseudogene 2","termid":"PBO:0063395"}


id: PBO:0029322
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_histone_H2A_phosphorylation_at_centromeric_tDNA_during_mitotic_S_phase","termid":"PBO:0029322"}


id: PBO:0074054
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"solute carrier family 25 member 34","termid":"PBO:0074054"}


id: GO:0030563
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Activity that provides specificity to a methylase by using base complementarity to guide site-specific 2'-O-ribose methylations to a small nuclear RNA molecule.","definition_xrefs":["PMID:11733745"],"direct_ancestors":[{"relation_name":"is_a","term_name":"RNA 2'-O-ribose methylation guide activity","termid":"GO:0030561"},{"relation_name":"is_a","term_name":"snRNA modification guide activity","termid":"GO:0030566"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003723"}],"interesting_parent_ids":["GO:0005488","GO:0003674","GO:0003723"],"is_obsolete":false,"name":"snRNA 2'-O-ribose methylation guide activity","termid":"GO:0030563"}


id: FYPO:0007541
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell morphology phenotype observed in the vegetative growth phase of the life cycle in which a cell is viable, branched, has more than one nucleus and more than one septum, and has a larger volume and is longer, than normal. In a swollen cell, both length and diameter may be greater than normal, although the cell is only considered elongated if the length:diameter ratio is also greater than normal.","definition_xrefs":["PomBase:vw","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"multinucleate multiseptate vegetative cell","termid":"FYPO:0001252"},{"relation_name":"is_a","term_name":"viable branched, elongated, multiseptate vegetative cell","termid":"FYPO:0003500"},{"relation_name":"is_a","term_name":"viable branched, swollen, elongated, multinucleate vegetative cell","termid":"FYPO:0006167"},{"relation_name":"is_a","term_name":"swollen elongated multiseptate vegetative cell","termid":"FYPO:0007436"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"output_of","termid":"FYPO:0000631"},{"rel_name":"output_of","termid":"FYPO:0000032"},{"rel_name":"has_part","termid":"FYPO:0000005"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"has_part","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000004"},{"rel_name":"is_a","termid":"FYPO:0000005"},{"rel_name":"output_of","termid":"FYPO:0001320"},{"rel_name":"has_part","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"has_part","termid":"FYPO:0000004"}],"interesting_parent_ids":["FYPO:0000004","FYPO:0000002","FYPO:0005447","FYPO:0000631","FYPO:0000005","FYPO:0001985","FYPO:0001320","FYPO:0000032"],"is_obsolete":false,"name":"viable branched, swollen, elongated, multinucleate, multiseptate vegetative cell","synonyms":[{"name":"viable branched, elongated, swollen, multinucleate, multiseptate vegetative cell","type":"exact"},{"name":"viable branched, swollen, elongated, multinucleate, multiseptate cell during vegetative growth","type":"exact"},{"name":"viable branched, swollen, elongated, multinucleate, multiseptate vegetative cell during mitotic cell cycle","type":"related"}],"termid":"FYPO:0007541"}


id: PBO:0049647
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"H4 clustered histone 1","termid":"PBO:0049647"}


id: PBO:0034723
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Lid2 complex PHD finger subunit Snt2","termid":"PBO:0034723"}


id: GO:0002599
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate, or extent of antigen processing and presentation of lipid antigen via MHC class Ib.","definition_xrefs":["GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of antigen processing and presentation via MHC class Ib","termid":"GO:0002593"},{"relation_name":"is_a","term_name":"regulation of antigen processing and presentation of lipid antigen via MHC class Ib","termid":"GO:0002598"},{"relation_name":"negatively_regulates","term_name":"antigen processing and presentation of lipid antigen via MHC class Ib","termid":"GO:0048003"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of antigen processing and presentation of lipid antigen via MHC class Ib","synonyms":[{"name":"down regulation of antigen processing and presentation of lipid antigen via MHC class Ib","type":"exact"},{"name":"down-regulation of antigen processing and presentation of lipid antigen via MHC class Ib","type":"exact"},{"name":"downregulation of antigen processing and presentation of lipid antigen via MHC class Ib","type":"exact"},{"name":"inhibition of antigen processing and presentation of lipid antigen via MHC class Ib","type":"narrow"},{"name":"negative regulation of lipid antigen processing and presentation via MHC class Ib","type":"exact"}],"termid":"GO:0002599"}


id: GO:0008845
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. (Was not defined before being made obsolete).","definition_xrefs":["PMID:12713806"],"gene_count":0,"genotype_count":0,"name":"obsolete endonuclease VIII activity (obsolete GO:0008845)","synonyms":[{"name":"endonuclease VIII activity","type":"exact"}],"termid":"GO:0008845"}


id: PBO:0073083
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"succinate dehydrogenase complex assembly factor 3","termid":"PBO:0073083"}


id: PBO:0067225
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 294, pseudogene","termid":"PBO:0067225"}


id: PBO:0083853
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Exosome non-catalytic core component; involved in 3'-5' RNA processing and degradation in both the nucleus and the cytoplasm; predicted to contain both S1 and KH RNA binding domains; mutations in the human homolog, EXOSC3, cause pontocerebellar hypoplasia with motor neuron degeneration","termid":"PBO:0083853"}


id: PBO:0084002
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Glycerol kinase; converts glycerol to glycerol-3-phosphate; glucose repression of expression is mediated by Adr1p and Ino2p-Ino4p; derepression of expression on non-fermentable carbon sources is mediated by Opi1p and Rsf1p","termid":"PBO:0084002"}


id: PBO:0064050
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"piwi-interacting RNA cluster 84","termid":"PBO:0064050"}


id: GO:1903108
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of transcription occuring in the mitochondrion.","definition_xrefs":["GOC:TermGenie","PMID:21357609","GO_REF:0000058"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of DNA-templated transcription","termid":"GO:0006355"},{"relation_name":"is_a","term_name":"regulation of mitochondrial gene expression","termid":"GO:0062125"},{"relation_name":"regulates","term_name":"mitochondrial transcription","termid":"GO:0006390"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006355"},{"rel_name":"regulates","termid":"GO:0010467"},{"rel_name":"regulates","termid":"GO:0006351"},{"rel_name":"regulates","termid":"GO:0140053"}],"interesting_parent_ids":["GO:0010467","GO:0006351","GO:0008150","GO:0140053","GO:0006355"],"is_obsolete":false,"name":"regulation of mitochondrial transcription","synonyms":[{"name":"regulation of transcription from mitochondrial promoter","type":"exact"}],"termid":"GO:1903108"}


id: GO:0060129
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which a relatively unspecialized cell acquires specialized structural and/or functional features of a thyroid-stimulating hormone-secreting cell. A thyroid-stimulating hormone-secreting cell is a basophil cell of the anterior pituitary that produces thyroid-stimulating hormone, thyrotrophin.","definition_xrefs":["GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"glandular epithelial cell differentiation","termid":"GO:0002067"},{"relation_name":"is_a","term_name":"neuroendocrine cell differentiation","termid":"GO:0061101"},{"relation_name":"part_of","term_name":"adenohypophysis development","termid":"GO:0021984"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"thyroid-stimulating hormone-secreting cell differentiation","synonyms":[{"name":"TSH-secreting cell differentiation","type":"exact"},{"name":"beta-basophil differentiation","type":"exact"},{"name":"thyroid stimulating hormone secreting cell differentiation","type":"exact"},{"name":"thyrotrope differentiation","type":"exact"},{"name":"thyrotroph differentiation","type":"exact"}],"termid":"GO:0060129"}


id: GO:0016148
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: GTP + H2O = GDP + phosphate.","definition_xrefs":["EC:3.6.1.48"],"gene_count":0,"genotype_count":0,"name":"obsolete protein-synthesizing GTPase activity, termination (obsolete GO:0016148)","synonyms":[{"name":"protein-synthesizing GTPase activity, termination","type":"exact"}],"termid":"GO:0016148"}


id: PATO:0000263
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0000263 visual threshold (obsolete PATO:0000263)","termid":"PATO:0000263"}


id: GO:0009894
data:
  {"annotated_genes":["SJAG_04232","SJAG_00004","SJAG_04586","SJAG_04435","SJAG_02573","SJAG_04880","SJAG_01818","SJAG_00343","SJAG_02213","SJAG_04006","SJAG_04350","SJAG_00824","SJAG_03883","SJAG_00169","SJAG_00766","SJAG_04946","SJAG_01436","SJAG_02765","SJAG_01210","SJAG_01331","SJAG_04990","SJAG_04088","SJAG_04084","SJAG_03157","SJAG_00686","SJAG_02370","SJAG_00685","SJAG_00285","SJAG_00071","SJAG_04249","SJAG_05322","SJAG_03886","SJAG_02244","SJAG_01509","SJAG_02239","SJAG_05314","SJAG_01053","SJAG_04477","SJAG_05006","SJAG_01843","SJAG_05014","SJAG_03283","SJAG_00854","SJAG_03448","SJAG_01489","SJAG_02808","SJAG_01625","SJAG_02540","SJAG_05010","SJAG_01836","SJAG_05346","SJAG_04496","SJAG_01544","SJAG_04825","SJAG_03699","SJAG_02723","SJAG_02725","SJAG_04427","SJAG_04824","SJAG_03745","SJAG_03597","SJAG_02433","SJAG_04321","SJAG_00670","SJAG_00966","SJAG_16457","SJAG_04682","SJAG_01944","SJAG_04546","SJAG_03696","SJAG_01521","SJAG_03048","SJAG_01131","SJAG_00712","SJAG_01191","SJAG_02036","SJAG_01716","SJAG_05694","SJAG_00759","SJAG_02383","SJAG_00704","SJAG_04153","SJAG_02485","SJAG_04818","SJAG_05000","SJAG_04407","SJAG_00475","SJAG_01910","SJAG_01533","SJAG_03876","SJAG_01528","SJAG_00052","SJAG_04655","SJAG_00642","SJAG_03179","SJAG_04502","SJAG_00391","SJAG_03113"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[113346],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0061158"},{"annotations":[77407,77702,85889,95558],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0070935"},{"annotations":[107234,75025,105165,78315,73931,76575],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0000290"},{"annotations":[71493,73810,72347,71784,74490,76498],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0043928"},{"annotations":[67296],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0061157"},{"annotations":[85198],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0048255"},{"annotations":[97789],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1905785"},{"annotations":[75430,72760],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0045820"},{"annotations":[102000],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0016242"},{"annotations":[84809],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1902373"},{"annotations":[85488],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0120271"},{"annotations":[102295,76298],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0032435"},{"annotations":[72117],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1902369"},{"annotations":[110570,72342,91472,71488,71779,101816,87862,88674,92780,97510,102788,111009],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0071042"},{"annotations":[93658,75721,78054,93577,110293,70843,95394],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0000288"},{"annotations":[87566,88201,89920,77682,91069,98437,110777,86454,72418,104496,88108,87621,112250,85489,71361],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0000289"},{"annotations":[87303],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0036450"},{"annotations":[91184],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1990074"},{"annotations":[84675],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1905786"},{"annotations":[93144],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1901098"},{"annotations":[109743,94929,102735,73313,104962,94381,107078],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0010508"},{"annotations":[69211],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1903599"},{"annotations":[92120],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:2001172"},{"annotations":[74831,101613],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0016239"},{"annotations":[102005],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0120272"},{"annotations":[72613,100278,85405],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0060213"},{"annotations":[85399],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1905857"},{"annotations":[61358,65431,67370,67329,69017,68493],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1901800"},{"annotations":[97810,104195,102006,106946,76635,112165],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0032436"},{"annotations":[106411],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0045732"},{"annotations":[94884],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1904352"},{"annotations":[85228],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0140501"},{"annotations":[68605,77194,72558,78136],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0010506"},{"annotations":[111740],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0061013"},{"annotations":[84157],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0043488"},{"annotations":[85502,85892,87157],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:2000815"},{"annotations":[94022],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0060211"},{"annotations":[75433],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0043456"},{"annotations":[77081,76407],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0061136"},{"annotations":[109790],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0032434"},{"annotations":[69283],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0042176"},{"annotations":[86317],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0090669"}]},"cv_name":"biological_process","definition":"Any process that modulates the frequency, rate, or extent of the chemical reactions and pathways resulting in the breakdown of substances.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of metabolic process","termid":"GO:0019222"},{"relation_name":"regulates","term_name":"catabolic 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of catabolic process","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000104":null,"GO_REF:0000107":null,"GO_REF:0000108":null,"GO_REF:0000117":null,"PMID:21873635":null},"synonyms":[{"name":"regulation of breakdown","type":"exact"},{"name":"regulation of catabolism","type":"exact"},{"name":"regulation of degradation","type":"exact"}],"termid":"GO:0009894","terms_by_termid":{"GO:0000288":null,"GO:0000289":null,"GO:0000290":null,"GO:0010506":null,"GO:0010508":null,"GO:0016239":null,"GO:0016242":null,"GO:0032434":null,"GO:0032435":null,"GO:0032436":null,"GO:0036450":null,"GO:0042176":null,"GO:0043456":null,"GO:0043488":null,"GO:0043928":null,"GO:0045732":null,"GO:0045820":null,"GO:0048255":null,"GO:0060211":null,"GO:0060213":null,"GO:0061013":null,"GO:0061136":null,"GO:0061157":null,"GO:0061158":null,"GO:0070935":null,"GO:0071042":null,"GO:0090669":null,"GO:0120271":null,"GO:0120272":null,"GO:0140501":null,"GO:1901098":null,"GO:1901800":null,"GO:1902369":null,"GO:1902373":null,"GO:1903599":null,"GO:1904352":null,"GO:1905785":null,"GO:1905786":null,"GO:1905857":null,"GO:1990074":null,"GO:2000815":null,"GO:2001172":null}}


id: GO:0070247
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the occurrence or rate of natural killer cell death by apoptotic process.","definition_xrefs":["GOC:mtg_apoptosis","GOC:add","ISBN:0781765196"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of lymphocyte apoptotic process","termid":"GO:0070228"},{"relation_name":"regulates","term_name":"natural killer cell apoptotic process","termid":"GO:0070246"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of natural killer cell apoptotic process","synonyms":[{"name":"regulation of NK cell apoptosis","type":"exact"},{"name":"regulation of natural killer cell apoptosis","type":"narrow"}],"termid":"GO:0070247"}


id: FYPO:0005955
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which the duration of the entire mitotic cell cycle is longer than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal mitotic cell cycle","termid":"FYPO:0000059"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000631"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0000002","FYPO:0000631","FYPO:0001985"],"is_obsolete":false,"name":"increased duration of mitotic cell cycle","synonyms":[{"name":"increased duration of mitotic cell cycle during vegetative growth","type":"exact"},{"name":"prolonged mitotic cell cycle","type":"exact"}],"termid":"FYPO:0005955"}


id: GO:0002613
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate, or extent of monocyte antigen processing and presentation.","definition_xrefs":["GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of antigen processing and presentation","termid":"GO:0002577"},{"relation_name":"regulates","term_name":"monocyte antigen processing and presentation","termid":"GO:0002471"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of monocyte antigen processing and presentation","termid":"GO:0002613"}


id: PR:C6Y4C4
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- sdh8 gene.","definition_xrefs":["UniProtKB:C6Y4C4","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"succinate dehydrogenase assembly factor 4, mitochondrial (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC26H8.16","synonyms":[{"name":"SDH assembly factor 4 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"SDHAF4 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-sdh8","type":"exact"}],"termid":"PR:C6Y4C4"}


id: PBO:0083805
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Essential protein that forms a dimer with Ntr1p; also forms a trimer, with Ntr2p and the DExD/H-box RNA helicase Prp43p, that is involved in spliceosome disassembly","termid":"PBO:0083805"}


id: GO:0031559
data:
  {"annotated_genes":["SJAG_00624"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[73708],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0000250"}]},"cv_name":"molecular_function","definition":"Catalysis of the cyclization of (S)-2,3-epoxysqualene to form a triterpene.","definition_xrefs":["GOC:ct"],"direct_ancestors":[{"relation_name":"is_a","term_name":"intramolecular transferase activity","termid":"GO:0016866"}],"gene_count":1,"genes_by_uniquename":{"SJAG_00624":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016853"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016853"],"is_obsolete":false,"name":"oxidosqualene cyclase activity","references_by_uniquename":{"PMID:21873635":null},"synonyms":[{"name":"2,3-oxidosqualene cyclase activity","type":"exact"}],"termid":"GO:0031559","terms_by_termid":{"GO:0000250":null}}


id: GO:0050758
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of the enzyme thymidylate synthase.","definition_xrefs":["GOC:ai"],"gene_count":0,"genotype_count":0,"name":"obsolete regulation of thymidylate synthase biosynthetic process (obsolete GO:0050758)","synonyms":[{"name":"regulation of thymidylate synthase anabolism","type":"exact"},{"name":"regulation of thymidylate synthase biosynthesis","type":"exact"},{"name":"regulation of thymidylate synthase formation","type":"exact"},{"name":"regulation of thymidylate synthase synthesis","type":"exact"}],"termid":"GO:0050758"}


id: PBO:0086878
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Putative transcriptional repressor with Zn(2)-Cys(6) finger; negatively regulates transcription in response to oleate levels, based on mutant phenotype and localization to oleate-responsive promoters; the authentic, non-tagged protein is detected in highly purified mitochondria in high-throughput studies; forms nuclear foci upon DNA replication stress","termid":"PBO:0086878"}


id: PBO:0028329
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_mitotic_telomere_separation","termid":"PBO:0028329"}


id: PBO:0055623
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 3062","termid":"PBO:0055623"}


id: GO:0022004
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A developmental process occurring after the brain has been specified along the neural axis that is required for the midbrain-hindbrain boundary to attain its fully functional state. The midbrain-hindbrain domain of the embryonic brain is comprised of the mesencephalic vesicle and the first rhombencephalic vesicle at early somitogenesis stages. An organizing center at the boundary patterns the midbrain and hindbrain primordia of the neural plate.","definition_xrefs":["GO_REF:0000021","PMID:15541513","GOC:dgh","GOC:dph","GOC:jid","GOC:cls"],"direct_ancestors":[{"relation_name":"is_a","term_name":"multicellular organismal process","termid":"GO:0032501"},{"relation_name":"part_of","term_name":"midbrain-hindbrain boundary maturation","termid":"GO:0021732"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"midbrain-hindbrain boundary maturation during brain development","termid":"GO:0022004"}


id: GO:0018321
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The modification of a protein by amino acid glucuronylation, the addition of a glucuronate group, the uronic acid derived from glucose.","definition_xrefs":["GOC:ai","GOC:pr"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein glycosylation","termid":"GO:0006486"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006486"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006486","GO:0008150"],"is_obsolete":false,"name":"protein glucuronylation","synonyms":[{"name":"protein amino acid glucuronylation","type":"exact"}],"termid":"GO:0018321"}


id: GO:0046121
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of any one of a family of organic molecules consisting of a purine or pyrimidine base covalently bonded to a sugar deoxyribose (a deoxyribonucleoside).","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"deoxyribonucleoside metabolic process","termid":"GO:0009120"},{"relation_name":"is_a","term_name":"nucleoside catabolic process","termid":"GO:0009164"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044248"},{"rel_name":"is_a","termid":"GO:0055086"}],"interesting_parent_ids":["GO:0044281","GO:0008150","GO:0055086","GO:0044248"],"is_obsolete":false,"name":"deoxyribonucleoside catabolic process","synonyms":[{"name":"deoxyribonucleoside breakdown","type":"exact"},{"name":"deoxyribonucleoside catabolism","type":"exact"},{"name":"deoxyribonucleoside degradation","type":"exact"}],"termid":"GO:0046121"}


id: GO:0042215
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving a phenol, any compound containing one or more hydroxyl groups directly attached to an aromatic carbon ring, in the absence of oxygen.","definition_xrefs":["PMID:12697029"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phenol-containing compound metabolic process","termid":"GO:0018958"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"anaerobic phenol-containing compound metabolic process","secondary_identifiers":["UM-BBD_pathwayID:phe"],"synonyms":[{"name":"anaerobic phenol-containing compound metabolism","type":"exact"}],"termid":"GO:0042215"}


id: GO:0046314
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of phosphocreatine, a phosphagen of creatine which is synthesized and broken down by creatine phosphokinase.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phosphocreatine metabolic process","termid":"GO:0006603"},{"relation_name":"is_a","term_name":"phosphagen biosynthetic process","termid":"GO:0042396"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"phosphocreatine biosynthetic process","synonyms":[{"name":"phosphocreatine anabolism","type":"exact"},{"name":"phosphocreatine biosynthesis","type":"exact"},{"name":"phosphocreatine formation","type":"exact"},{"name":"phosphocreatine synthesis","type":"exact"}],"termid":"GO:0046314"}


id: PBO:0054515
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1915","termid":"PBO:0054515"}


id: GO:0072316
data:
  {"annotated_genes":["SJAG_02718"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[106549],"is_not":false,"summary":null,"term":"GO:0072316"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of alpha-glucans in the ascus wall that contributes to the release of ascospores from the ascus.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"alpha-glucan catabolic process","termid":"GO:0030980"},{"relation_name":"is_a","term_name":"extracellular polysaccharide catabolic process involved in ascospore release from ascus","termid":"GO:0072000"}],"gene_count":1,"genes_by_uniquename":{"SJAG_02718":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0007049"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0005975"}],"interesting_parent_ids":["GO:0007049","GO:0008150","GO:0005975"],"is_obsolete":false,"name":"alpha-glucan catabolic process involved in ascospore release from ascus","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"alpha-glucan breakdown involved in ascospore release from ascus","type":"exact"},{"name":"alpha-glucan catabolism involved in ascospore release from ascus","type":"exact"},{"name":"alpha-glucan degradation involved in ascospore release from ascus","type":"exact"}],"termid":"GO:0072316","terms_by_termid":{"GO:0072316":null}}


id: PBO:0054827
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2240","termid":"PBO:0054827"}


id: FYPO:0007543
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which double-stranded DNA binding by a gene product does not occur, when a gene or the bound DNA sequence is mutated. The affected gene product may be encoded by the mutated gene, or by a different gene.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abolished DNA binding","termid":"FYPO:0000659"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0000653"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000707"}],"interesting_parent_ids":["FYPO:0000653","FYPO:0001985","FYPO:0000707","FYPO:0000652"],"is_obsolete":false,"name":"abolished double-stranded DNA binding","synonyms":[{"name":"abolished dsDNA binding","type":"exact"},{"name":"double-stranded DNA binding abolished","type":"exact"}],"termid":"FYPO:0007543"}


id: PBO:0065837
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RAB9A, member RAS oncogene family pseudogene 2","termid":"PBO:0065837"}


id: PBO:0034528
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_protein_phosphorylation_during_meiotic_cell_cycle","termid":"PBO:0034528"}


id: PBO:0079859
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"unc-93 homolog B8 (pseudogene)","termid":"PBO:0079859"}


id: PBO:0091535
data:
  {"annotation_feature_type":"gene","cv_name":"misc","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"binding affinity for ADP-bound F-actin Kd 900 nM","termid":"PBO:0091535"}


id: PBO:0070725
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L9 pseudogene 30","termid":"PBO:0070725"}


id: PBO:0014247
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"translational activator, zf-CCHC type zinc finger protein (predicted)","termid":"PBO:0014247"}


id: PBO:0035701
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_histone_H3-K9_dimethylation_during_vegetative_growth","termid":"PBO:0035701"}


id: GO:0051555
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of flavonols, a member of a class of vascular pigments formed by consecutive oxidative processes from the flavonoid intermediates flavanones and dihydroflavonols. Flavonols are the most widespread of the flavonoids and have a wide array of physiological activities.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"flavone biosynthetic process","termid":"GO:0051553"},{"relation_name":"is_a","term_name":"flavonol metabolic process","termid":"GO:0051554"},{"relation_name":"is_a","term_name":"organic hydroxy compound biosynthetic process","termid":"GO:1901617"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"flavonol biosynthetic process","secondary_identifiers":["MetaCyc:PWY-3101"],"termid":"GO:0051555"}


id: PBO:0061468
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nuclear receptor binding factor 2 pseudogene 3","termid":"PBO:0061468"}


id: PBO:0031364
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-resistance_to_L-azetidine-2-carboxylic_acid","termid":"PBO:0031364"}


id: GO:0030164
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Structural change in proteins which destroys the native, active configuration without rupture of peptide bonds.","definition_xrefs":["ISBN:3110145359","GOC:kd"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein catabolic process","termid":"GO:0030163"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0030163"}],"interesting_parent_ids":["GO:0008150","GO:0030163"],"is_obsolete":false,"name":"protein denaturation","secondary_identifiers":["Wikipedia:Denaturation#Protein_denaturation"],"termid":"GO:0030164"}


id: PBO:0031004
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-sensitive_to_sodium_dodecyl_sulfate","termid":"PBO:0031004"}


id: GO:0086071
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The attachment of an atrial cardiomyocyte to an AV node cell via adhesion molecules that results in the cells being juxtaposed so that they can communicate.","definition_xrefs":["GOC:BHF","GOC:mtg_cardiac_conduct_nov11"],"direct_ancestors":[{"relation_name":"is_a","term_name":"heterotypic cell-cell adhesion","termid":"GO:0034113"},{"relation_name":"is_a","term_name":"cardiac muscle cell-cardiac muscle cell adhesion","termid":"GO:0086042"},{"relation_name":"part_of","term_name":"atrial cardiac muscle cell to AV node cell communication","termid":"GO:0086066"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0007155"}],"interesting_parent_ids":["GO:0007155","GO:0008150"],"is_obsolete":false,"name":"atrial cardiac muscle cell-AV node cell adhesion involved in cell communication","synonyms":[{"name":"atrial cardiomyocyte-AV node cell adhesion involved in cell communication","type":"exact"},{"name":"atrial cardiomyocyte-atrioventricular node cell adhesion involved in cell communication","type":"exact"}],"termid":"GO:0086071"}


id: GO:1904946
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cobalt(II) acetate stimulus.","definition_xrefs":["GOC:mr","PMID:24315322","GO_REF:0000071","GOC:TermGenie"],"gene_count":0,"genotype_count":0,"name":"obsolete cellular response to cobalt(II) acetate (obsolete GO:1904946)","termid":"GO:1904946"}


id: GO:0019150
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: ATP + D-ribulose = ADP + D-ribulose 5-phosphate.","definition_xrefs":["EC:2.7.1.47"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phosphotransferase activity, alcohol group as acceptor","termid":"GO:0016773"},{"relation_name":"is_a","term_name":"carbohydrate kinase activity","termid":"GO:0019200"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016301"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016301","GO:0003674","GO:0016740","GO:0003824"],"is_obsolete":false,"name":"D-ribulokinase activity","secondary_identifiers":["RHEA:17601","MetaCyc:D-RIBULOKIN-RXN"],"synonyms":[{"name":"ATP:D-ribulose 5-phosphotransferase activity","type":"related"},{"name":"D-ribulokinase (phosphorylating)","type":"related"}],"termid":"GO:0019150"}


id: SO:0000843
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A region which is part of a bacterial RNA polymerase promoter.","definition_xrefs":["SO:ke"],"gene_count":0,"genotype_count":0,"name":"OBSOLETE SO:0000843 bacterial_RNApol_promoter_region (obsolete SO:0000843)","termid":"SO:0000843"}


id: FYPO:0003291
data:
  {"alleles_by_uniquename":{"SJAG_04697:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_04697","name":"gms1delta","uniquename":"SJAG_04697:allele-1"}},"annotation_feature_type":"genotype","cv_annotations":{"single_locus_phenotype":[{"annotations":[114321],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0003727"}]},"cv_name":"fission_yeast_phenotype","definition":"A phenotype in which the glycan moiety of a glycoprotein does not contain galactose residues. In wild-type cells, glycoprotein glycans contain mannose and galactose residues in a 1:1.2 ratio, and the galactose residues are connected by alpha-1,2 linkages.","definition_xrefs":["PMID:9125114","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal glycoprotein glycan structure","termid":"FYPO:0003290"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04697":null},"genotype_count":1,"genotypes_by_uniquename":{"gms1delta":{"display_name":"gms1delta","display_uniquename":"gms1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04697:allele-1","expression":"Null"}]}]}},"interesting_parent_details":[{"rel_name":"output_of","termid":"FYPO:0002494"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0003290"},{"rel_name":"output_of","termid":"FYPO:0002274"},{"rel_name":"output_of","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0003290","FYPO:0001985","FYPO:0002274","FYPO:0005447","FYPO:0002494","FYPO:0001320"],"is_obsolete":false,"name":"galactose absent from glycoprotein glycan","references_by_uniquename":{"PMID:36058798":null},"single_locus_annotated_genes":["SJAG_04697"],"single_locus_genotype_uniquenames":["gms1delta"],"synonyms":[{"name":"alpha 1,2-linked galactose residues absent from glycoprotein","type":"exact"},{"name":"galactose absent from glycoprotein oligosaccharide","type":"related"}],"termid":"FYPO:0003291","terms_by_termid":{"FYPO:0003727":null,"FYPO_EXT:0000001":null}}


id: PBO:0051202
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"immunoglobulin heavy variable 4-30-1","termid":"PBO:0051202"}


id: SO:0001735
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A kind of histone modification site, whereby the 79th residue (a lysine), from the start of the H3 histone protein is methylated.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"histone_methylation_site","termid":"SO:0001701"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"SO:0000839"}],"interesting_parent_ids":["SO:0000839"],"is_obsolete":false,"name":"H3K79_methylation_site","synonyms":[{"name":"H3K79 methylation site","type":"exact"}],"termid":"SO:0001735"}


id: GO:1903892
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of the ATF6-mediated unfolded protein response.","definition_xrefs":["GO_REF:0000058","GOC:PARL","GOC:bf","GOC:TermGenie","PMID:22013210"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of endoplasmic reticulum unfolded protein response","termid":"GO:1900102"},{"relation_name":"is_a","term_name":"regulation of ATF6-mediated unfolded protein response","termid":"GO:1903891"},{"relation_name":"negatively_regulates","term_name":"ATF6-mediated unfolded protein response","termid":"GO:0036500"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0023052"},{"rel_name":"negatively_regulates","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"negative regulation of ATF6-mediated unfolded protein response","synonyms":[{"name":"down regulation of ATF6 branch of UPR","type":"exact"},{"name":"down regulation of ATF6 signaling in response to endoplasmic reticulum stress","type":"related"},{"name":"down regulation of ATF6-alpha UPR branch","type":"narrow"},{"name":"down regulation of ATF6-beta UPR branch","type":"narrow"},{"name":"down regulation of ATF6-mediated unfolded protein response","type":"exact"},{"name":"down regulation of UPR signaling by ATF6 stress sensor","type":"exact"},{"name":"down regulation of activating transcription factor 6 signaling in unfolded protein response","type":"exact"},{"name":"down regulation of endoplasmic reticulum unfolded protein response; ATF6 signaling","type":"exact"},{"name":"down-regulation of ATF6 branch of UPR","type":"exact"},{"name":"down-regulation of ATF6 signaling in response to endoplasmic reticulum stress","type":"related"},{"name":"down-regulation of ATF6-alpha UPR branch","type":"narrow"},{"name":"down-regulation of ATF6-beta UPR branch","type":"narrow"},{"name":"down-regulation of ATF6-mediated unfolded protein response","type":"exact"},{"name":"down-regulation of UPR signaling by ATF6 stress sensor","type":"exact"},{"name":"down-regulation of activating transcription factor 6 signaling in unfolded protein response","type":"exact"},{"name":"down-regulation of endoplasmic reticulum unfolded protein response; ATF6 signaling","type":"exact"},{"name":"downregulation of ATF6 branch of UPR","type":"exact"},{"name":"downregulation of ATF6 signaling in response to endoplasmic reticulum stress","type":"related"},{"name":"downregulation of ATF6-alpha UPR branch","type":"narrow"},{"name":"downregulation of ATF6-beta UPR branch","type":"narrow"},{"name":"downregulation of ATF6-mediated unfolded protein response","type":"exact"},{"name":"downregulation of UPR signaling by ATF6 stress sensor","type":"exact"},{"name":"downregulation of activating transcription factor 6 signaling in unfolded protein response","type":"exact"},{"name":"downregulation of endoplasmic reticulum unfolded protein response; ATF6 signaling","type":"exact"},{"name":"inhibition of ATF6 branch of UPR","type":"narrow"},{"name":"inhibition of ATF6 signaling in response to endoplasmic reticulum stress","type":"related"},{"name":"inhibition of ATF6-alpha UPR branch","type":"narrow"},{"name":"inhibition of ATF6-beta UPR branch","type":"narrow"},{"name":"inhibition of ATF6-mediated unfolded protein response","type":"narrow"},{"name":"inhibition of UPR signaling by ATF6 stress sensor","type":"narrow"},{"name":"inhibition of activating transcription factor 6 signaling in unfolded protein response","type":"narrow"},{"name":"inhibition of endoplasmic reticulum unfolded protein response; ATF6 signaling","type":"narrow"},{"name":"negative regulation of ATF6 branch of UPR","type":"exact"},{"name":"negative regulation of ATF6 signaling in response to endoplasmic reticulum stress","type":"related"},{"name":"negative regulation of ATF6-alpha UPR branch","type":"narrow"},{"name":"negative regulation of ATF6-beta UPR branch","type":"narrow"},{"name":"negative regulation of UPR signaling by ATF6 stress sensor","type":"exact"},{"name":"negative regulation of activating transcription factor 6 signaling in unfolded protein response","type":"exact"},{"name":"negative regulation of endoplasmic reticulum unfolded protein response; ATF6 signaling","type":"exact"}],"termid":"GO:1903892"}


id: PBO:0071563
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L35a pseudogene 29","termid":"PBO:0071563"}


id: PBO:0051958
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ITPR interacting domain containing 1","termid":"PBO:0051958"}


id: CHEBI:17345
data:
  {"annotation_feature_type":"gene","cv_name":"chebi_ontology","direct_ancestors":[{"relation_name":"is_a","term_name":"chemical entity","termid":"CHEBI:24431"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"GMP","termid":"CHEBI:17345"}


id: PBO:0070170
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U7 small nuclear 84 pseudogene","termid":"PBO:0070170"}


id: GO:1900931
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of L-tyrosine import into the cell.","definition_xrefs":["GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of transmembrane transport","termid":"GO:0034764"},{"relation_name":"is_a","term_name":"positive regulation of amino acid transport","termid":"GO:0051957"},{"relation_name":"is_a","term_name":"regulation of L-tyrosine import across plasma membrane","termid":"GO:1900929"},{"relation_name":"positively_regulates","term_name":"L-tyrosine import across plasma membrane","termid":"GO:1903808"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"positively_regulates","termid":"GO:0055085"},{"rel_name":"positively_regulates","termid":"GO:0006810"},{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"regulates","termid":"GO:0055085"}],"interesting_parent_ids":["GO:0055085","GO:0006810","GO:0008150"],"is_obsolete":false,"name":"positive regulation of L-tyrosine import across plasma membrane","synonyms":[{"name":"activation of L-tyrosine import","type":"narrow"},{"name":"activation of L-tyrosine uptake","type":"narrow"},{"name":"positive regulation of L-tyrosine import","type":"broad"},{"name":"positive regulation of L-tyrosine uptake","type":"related"},{"name":"up regulation of L-tyrosine import","type":"exact"},{"name":"up regulation of L-tyrosine uptake","type":"related"},{"name":"up-regulation of L-tyrosine import","type":"exact"},{"name":"up-regulation of L-tyrosine uptake","type":"related"},{"name":"upregulation of L-tyrosine import","type":"exact"},{"name":"upregulation of L-tyrosine uptake","type":"related"}],"termid":"GO:1900931"}


id: PBO:0054655
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2060","termid":"PBO:0054655"}


id: GO:0061148
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process which results in the assembly, arrangement of constituent parts, or disassembly of an extracellular matrix of the endocardium. The endocardium is an anatomical structure comprised of an endothelium and an extracellular matrix that forms the innermost layer of tissue of the heart, and lines the heart chambers.","definition_xrefs":["GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"extracellular matrix organization","termid":"GO:0030198"},{"relation_name":"part_of","term_name":"endocardium development","termid":"GO:0003157"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"extracellular matrix organization involved in endocardium development","synonyms":[{"name":"extracellular matrix organisation involved in endocardium development","type":"exact"}],"termid":"GO:0061148"}


id: PBO:0081071
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger DHHC-type palmitoyltransferase 4","termid":"PBO:0081071"}


id: GO:0001553
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The set of processes resulting in differentiation of theca and granulosa cells into luteal cells and in the formation of a corpus luteum after ovulation.","direct_ancestors":[{"relation_name":"is_a","term_name":"ovulation cycle process","termid":"GO:0022602"},{"relation_name":"part_of","term_name":"female gonad development","termid":"GO:0008585"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"luteinization","secondary_identifiers":["Wikipedia:Luteinization","Wikipedia:Luteal_phase"],"synonyms":[{"name":"luteal phase","type":"related"}],"termid":"GO:0001553"}


id: PBO:0068336
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ring finger protein 44","termid":"PBO:0068336"}


id: GO:0071640
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate, or extent of production of macrophage inflammatory protein 1 alpha.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of chemokine production","termid":"GO:0032642"},{"relation_name":"regulates","term_name":"macrophage inflammatory protein-1 alpha production","termid":"GO:0071608"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0008150","GO:0010467"],"is_obsolete":false,"name":"regulation of macrophage inflammatory protein 1 alpha production","synonyms":[{"name":"regulation of CCL3 production","type":"exact"},{"name":"regulation of MIP-1a production","type":"exact"},{"name":"regulation of chemokine (C-C motif) ligand 3 production","type":"exact"},{"name":"regulation of macrophage inflammatory protein production","type":"broad"}],"termid":"GO:0071640"}


id: PBO:0026919
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_histone_H4-K12_acetylation","termid":"PBO:0026919"}


id: PBO:0039476
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ankyrin repeat domain 18F, pseudogene","termid":"PBO:0039476"}


id: PBO:0058838
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 8068","termid":"PBO:0058838"}


id: PBO:0040628
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"B cell scaffold protein with ankyrin repeats 1","termid":"PBO:0040628"}


id: PBO:0003226
data:
  {"annotation_feature_type":"gene","cv_name":"name_description","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Functional Homologue of Nce102","termid":"PBO:0003226"}


id: PBO:0050581
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"heparan sulfate-glucosamine 3-sulfotransferase 5","termid":"PBO:0050581"}


id: PBO:0056385
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitogen-activated protein kinase 15","termid":"PBO:0056385"}


id: PBO:0042215
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cyclin L2 pseudogene 1","termid":"PBO:0042215"}


id: GO:2000167
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of planar cell polarity pathway involved in neural tube closure.","definition_xrefs":["GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of embryonic development","termid":"GO:0045995"},{"relation_name":"is_a","term_name":"regulation of nervous system development","termid":"GO:0051960"},{"relation_name":"is_a","term_name":"regulation of establishment of planar polarity involved in neural tube closure","termid":"GO:0090178"},{"relation_name":"is_a","term_name":"regulation of Wnt signaling pathway, planar cell polarity pathway","termid":"GO:2000095"},{"relation_name":"regulates","term_name":"planar cell polarity pathway involved in neural tube closure","termid":"GO:0090179"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"regulation of planar cell polarity pathway involved in neural tube closure","termid":"GO:2000167"}


id: GO:0033720
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: (S)-2-hydroxy-2-phenylacetate + acceptor = 2-oxo-2-phenylacetate + reduced acceptor.","definition_xrefs":["EC:1.1.99.31"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on CH-OH group of donors","termid":"GO:0016614"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003824","GO:0016491","GO:0003674"],"is_obsolete":false,"name":"(S)-mandelate dehydrogenase activity","secondary_identifiers":["UM-BBD_reactionID:r1048","RHEA:15749","MetaCyc:MANDELATE-DEHYDROGENASE-RXN"],"synonyms":[{"name":"(S)-2-hydroxy-2-phenylacetate:acceptor 2-oxidoreductase activity","type":"related"},{"name":"L(+)-mandelate dehydrogenase activity","type":"related"},{"name":"MDH","type":"related"}],"termid":"GO:0033720"}


id: GO:1902421
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving H2 (dihydrogen).","definition_xrefs":["GOC:mengo_curators","PMID:20395274","GOC:TermGenie","PMID:20692761"],"direct_ancestors":[{"relation_name":"is_a","term_name":"metabolic process","termid":"GO:0008152"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"hydrogen metabolic process","synonyms":[{"name":"H2 metabolism","type":"exact"},{"name":"dihydrogen metabolism","type":"exact"},{"name":"molecular hydrogen metabolism","type":"exact"}],"termid":"GO:1902421"}


id: PBO:0031578
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_chromosome_organization","termid":"PBO:0031578"}


id: PBO:0090066
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"snRNP binding protein Sgt1","termid":"PBO:0090066"}


id: GO:0071398
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a fatty acid stimulus.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to fatty acid","termid":"GO:0070542"},{"relation_name":"is_a","term_name":"cellular response to lipid","termid":"GO:0071396"},{"relation_name":"is_a","term_name":"cellular response to oxygen-containing compound","termid":"GO:1901701"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cellular response to fatty acid","termid":"GO:0071398"}


id: PBO:0067044
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 63, pseudogene","termid":"PBO:0067044"}


id: PBO:0054208
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1588","termid":"PBO:0054208"}


id: PBO:0091389
data:
  {"annotation_feature_type":"gene","cv_name":"name_description","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Proteolysis factor that Quiescence Requires","termid":"PBO:0091389"}


id: MOD:00705
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-valine residue to D-valine.","definition_xrefs":["PubMed:15853325","RESID:AA0200","ChEBI:30016"],"direct_ancestors":[{"relation_name":"is_a","term_name":"stereoisomerized residue","termid":"MOD:00664"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"D-valine","synonyms":[{"name":"(R)-2-amino-3-methylbutanoic acid","type":"exact"},{"name":"D-Val","type":"exact"},{"name":"D-valine","type":"exact"},{"name":"MOD_RES D-valine","type":"exact"},{"name":"alpha-amino-beta-methylbutyric acid","type":"exact"},{"name":"alpha-aminoisovaleric acid","type":"exact"}],"termid":"MOD:00705"}


id: FYPO:0005275
data:
  {"alleles_by_uniquename":{"SJAG_01330:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_01330","name":"mad2delta","uniquename":"SJAG_01330:allele-1"},"SJAG_01956:allele-1":{"allele_type":"amino_acid_mutation","description":"E405K ts","gene_uniquename":"SJAG_01956","name":"nuc2-1051","uniquename":"SJAG_01956:allele-1"},"SJAG_03351:allele-1":{"allele_type":"amino_acid_mutation","description":"A186T ts","gene_uniquename":"SJAG_03351","name":"cut23-415","uniquename":"SJAG_03351:allele-1"},"SJAG_03575:allele-1":{"allele_type":"amino_acid_mutation","description":"E548K ts","gene_uniquename":"SJAG_03575","name":"apc2-361","uniquename":"SJAG_03575:allele-1"}},"annotation_feature_type":"genotype","cv_annotations":{"single_locus_phenotype":[{"annotations":[114488,114441],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0004318"},{"annotations":[114101,114103,114102],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0000324"}]},"cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which a cell does not execute a mitotic cell cycle phase transition normally.","definition_xrefs":["PomBase:mah","GO:0044772"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal mitotic cell cycle process","termid":"FYPO:0002737"},{"relation_name":"is_a","term_name":"abnormal cell cycle phase transition","termid":"FYPO:0005273"}],"gene_count":4,"genes_by_uniquename":{"SJAG_01330":null,"SJAG_01956":null,"SJAG_03351":null,"SJAG_03575":null},"genotype_count":4,"genotypes_by_uniquename":{"apc2-361-E548K_ts-amino_acid_mutation-expression-not_assayed_or_wild_type":{"display_name":"apc2-361(E548K ts)","display_uniquename":"apc2-361-E548K_ts-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03575:allele-1","expression":"Not assayed or wild type"}]}]},"cut23-415-A186T_ts-amino_acid_mutation-expression-not_assayed_or_wild_type":{"display_name":"cut23-415(A186T ts)","display_uniquename":"cut23-415-A186T_ts-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03351:allele-1","expression":"Not assayed or wild type"}]}]},"mad2delta":{"display_name":"mad2delta","display_uniquename":"mad2delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01330:allele-1","expression":"Null"}]}]},"nuc2-1051-E405K_ts-amino_acid_mutation-expression-not_assayed_or_wild_type":{"display_name":"nuc2-1051(E405K ts)","display_uniquename":"nuc2-1051-E405K_ts-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01956:allele-1","expression":"Not assayed or wild type"}]}]}},"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0005447","FYPO:0001985","FYPO:0000631"],"is_obsolete":false,"name":"abnormal mitotic cell cycle phase transition","references_by_uniquename":{"PMID:21802294":null,"PMID:23786411":null,"PMID:32109380":null},"single_locus_annotated_genes":["SJAG_01330","SJAG_03351","SJAG_01956","SJAG_03575"],"single_locus_genotype_uniquenames":["apc2-361-E548K_ts-amino_acid_mutation-expression-not_assayed_or_wild_type","nuc2-1051-E405K_ts-amino_acid_mutation-expression-not_assayed_or_wild_type","mad2delta","cut23-415-A186T_ts-amino_acid_mutation-expression-not_assayed_or_wild_type"],"termid":"FYPO:0005275","terms_by_termid":{"FYECO:0000004":null,"FYECO:0000137":null,"FYECO:0000162":null,"FYPO:0000324":null,"FYPO:0004318":null}}


id: PBO:0088376
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Golgi phosphoenolpyruvate transmembrane transporter Pet2","termid":"PBO:0088376"}


id: PBO:0073970
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SLC22A18 antisense RNA","termid":"PBO:0073970"}


id: PR:O59826
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A voltage-gated potassium channel subunit beta-1 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"voltage-gated potassium channel subunit beta (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC965.06","secondary_identifiers":["UniProtKB:O59826"],"synonyms":[{"name":"K(+) channel subunit beta (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-KCNAB1","type":"exact"}],"termid":"PR:O59826"}


id: GO:0043984
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The modification of histone H4 by the addition of an acetyl group to a lysine residue at position 16 of the histone.","definition_xrefs":["GOC:jl"],"gene_count":0,"genotype_count":0,"name":"obsolete histone H4-K16 acetylation (obsolete GO:0043984)","synonyms":[{"name":"histone H4 acetylation at K16","type":"exact"}],"termid":"GO:0043984"}


id: GO:0016321
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The cell cycle process in which genetic material, in the form of chromosomes, is organized and then physically separated and apportioned to two or more sets during the meiotic cell cycle in a female.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular process involved in reproduction in multicellular organism","termid":"GO:0022412"},{"relation_name":"is_a","term_name":"meiotic chromosome segregation","termid":"GO:0045132"},{"relation_name":"part_of","term_name":"female meiotic nuclear division","termid":"GO:0007143"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0007049"},{"rel_name":"part_of","termid":"GO:0140013"}],"interesting_parent_ids":["GO:0140013","GO:0008150","GO:0007049"],"is_obsolete":false,"name":"female meiosis chromosome segregation","termid":"GO:0016321"}


id: PBO:0090794
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cytochrome c oxidase assembly protein Coa1","termid":"PBO:0090794"}


id: PBO:0014295
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Cdc48-Ufd1-Npl4 complex subunit Ufd1 involved in ubiquitin-dependent protein catabolism (predicted)","termid":"PBO:0014295"}


id: PBO:0091508
data:
  {"annotation_feature_type":"gene","cv_name":"name_description","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Pre-TRNA Accumulation","termid":"PBO:0091508"}


id: FYPO:0000669
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which a peptidase activity is absent.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abolished catalytic activity","termid":"FYPO:0000664"},{"relation_name":"is_a","term_name":"abnormal peptidase activity","termid":"FYPO:0000666"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000707"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000654"},{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0000661"}],"interesting_parent_ids":["FYPO:0000652","FYPO:0000661","FYPO:0001985","FYPO:0000654","FYPO:0000707"],"is_obsolete":false,"name":"abolished peptidase activity","synonyms":[{"name":"abolished protease activity","type":"exact"},{"name":"peptidase activity abolished","type":"exact"}],"termid":"FYPO:0000669"}


id: GO:0030887
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stimulates, induces or increases the rate of myeloid dendritic cell activation.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of leukocyte activation","termid":"GO:0002696"},{"relation_name":"is_a","term_name":"regulation of myeloid dendritic cell activation","termid":"GO:0030885"},{"relation_name":"positively_regulates","term_name":"myeloid dendritic cell activation","termid":"GO:0001773"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of myeloid dendritic cell activation","synonyms":[{"name":"activation of myeloid dendritic cell activation","type":"narrow"},{"name":"stimulation of myeloid dendritic cell activation","type":"narrow"},{"name":"up regulation of myeloid dendritic cell activation","type":"exact"},{"name":"up-regulation of myeloid dendritic cell activation","type":"exact"},{"name":"upregulation of myeloid dendritic cell activation","type":"exact"}],"termid":"GO:0030887"}


id: PBO:0046172
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ETS transcription factor ELK1","termid":"PBO:0046172"}


id: FYPO:0005725
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which the observed rate of protein methyltransferase activity is decreased.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased catalytic activity","termid":"FYPO:0000663"},{"relation_name":"is_a","term_name":"abnormal protein methyltransferase activity","termid":"FYPO:0005723"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000654"},{"rel_name":"is_a","termid":"FYPO:0000707"},{"rel_name":"is_a","termid":"FYPO:0000661"}],"interesting_parent_ids":["FYPO:0000652","FYPO:0000661","FYPO:0001985","FYPO:0000654","FYPO:0000707"],"is_obsolete":false,"name":"decreased protein methyltransferase activity","synonyms":[{"name":"reduced protein methyltransferase activity","type":"exact"}],"termid":"FYPO:0005725"}


id: SO:0002269
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"R2 retrotransposons are LINE elements (SO:0000194) that insert site-specifically into the host organism's 28S ribosomal RNA (rRNA) genes.","definition_xrefs":["PMID:21734471"],"direct_ancestors":[{"relation_name":"is_a","term_name":"LINE_element","termid":"SO:0000194"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"R2_LINE_retrotransposon","synonyms":[{"name":"R2 LINE retrotransposon","type":"exact"},{"name":"R2 retrotransposon","type":"exact"},{"name":"RIR retrotransposon","type":"exact"}],"termid":"SO:0002269"}


id: PR:Q9UTS5-1
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A zinc finger protein zas1 (Schizosaccharomyces pombe 972h-) that is a translation product of some mRNA giving rise to a protein with the amino acid sequence represented by UniProtKB:Q9UTS5-1.","definition_xrefs":["PRO:DNx","UniProtKB:Q9UTS5"],"direct_ancestors":[{"relation_name":"is_a","term_name":"zinc finger protein zas1 (Schizosaccharomyces pombe 972h-)","termid":"PR:Q9UTS5"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein zas1 isoform 1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC1002.01","secondary_identifiers":["UniProtKB:Q9UTS5-1"],"synonyms":[{"name":"Spom972h-zas1/iso:1","type":"exact"},{"name":"zinc finger protein zas1 isoform zas1B (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:Q9UTS5-1"}


id: GO:0061677
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 2-dehydro-3-deoxy-D-gluconate = pyruvate + D-glyceraldehyde.","definition_xrefs":["GOC:dph","PMID:12824170","RHEA:35583"],"direct_ancestors":[{"relation_name":"is_a","term_name":"aldehyde-lyase activity","termid":"GO:0016832"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016829"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016829"],"is_obsolete":false,"name":"2-dehydro-3-deoxy-D-gluconate aldolase activity","secondary_identifiers":["EC:4.1.2.51","MetaCyc:DHDOGALDOL-RXN","GO:0043725"],"synonyms":[{"name":"2-keto-3-deoxygluconate aldolase activity","type":"exact"},{"name":"KDG aldolase activity","type":"exact"}],"termid":"GO:0061677"}


id: GO:0048664
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which a cell becomes capable of differentiating autonomously into a neuron regardless of its environment; upon determination, the cell fate cannot be reversed.","definition_xrefs":["GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell fate determination","termid":"GO:0001709"},{"relation_name":"part_of","term_name":"neuron fate commitment","termid":"GO:0048663"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"neuron fate determination","termid":"GO:0048664"}


id: PBO:0059487
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"methionine sulfoxide reductase B2","termid":"PBO:0059487"}


id: PBO:0089758
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"U3 snoRNP-associated protein Utp5","termid":"PBO:0089758"}


id: GO:0031987
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Self-propelled movement of a cell or organism from one location to another in a behavioral context; the aspect of locomotory behavior having to do with movement.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"locomotion","termid":"GO:0040011"},{"relation_name":"part_of","term_name":"locomotory behavior","termid":"GO:0007626"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"locomotion involved in locomotory behavior","synonyms":[{"name":"locomotion during locomotory behaviour","type":"exact"}],"termid":"GO:0031987"}


id: PBO:0035783
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abolished_protein_deubiquitination_following_cellular_response_to_methyl_methanesulfonate_during_vegetative_growth","termid":"PBO:0035783"}


id: PBO:0034366
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-in_in-paralogy_relationship_with","termid":"PBO:0034366"}


id: PBO:0072117
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein S14 pseudogene 6","termid":"PBO:0072117"}


id: PBO:0059880
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MT-ND1 pseudogene 3","termid":"PBO:0059880"}


id: PBO:0044485
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cytochrome P450 family 27 subfamily A member 1","termid":"PBO:0044485"}


id: GO:0043469
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate, or extent of the chemical reactions and pathways resulting in the breakdown of xylose.","definition_xrefs":["GOC:mlg"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of carbohydrate catabolic process","termid":"GO:0043470"},{"relation_name":"is_a","term_name":"regulation of small molecule metabolic process","termid":"GO:0062012"},{"relation_name":"regulates","term_name":"D-xylose catabolic process","termid":"GO:0042843"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0044281"},{"rel_name":"regulates","termid":"GO:0005975"}],"interesting_parent_ids":["GO:0005975","GO:0008150","GO:0044281"],"is_obsolete":false,"name":"regulation of D-xylose catabolic process","termid":"GO:0043469"}


id: PBO:0056013
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"LSM8 homolog, U6 small nuclear RNA associated","termid":"PBO:0056013"}


id: PBO:0058413
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 4782","termid":"PBO:0058413"}


id: GO:0002546
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate, or extent of the tissue kallikrein-kinin cascade.","definition_xrefs":["GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of kinin cascade","termid":"GO:0002257"},{"relation_name":"is_a","term_name":"regulation of tissue kallikrein-kinin cascade","termid":"GO:0002382"},{"relation_name":"negatively_regulates","term_name":"tissue kallikrein-kinin cascade","termid":"GO:0002255"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"negatively_regulates","termid":"GO:0051604"},{"rel_name":"regulates","termid":"GO:0051604"},{"rel_name":"negatively_regulates","termid":"GO:0010467"},{"rel_name":"regulates","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0008150","GO:0010467","GO:0051604"],"is_obsolete":false,"name":"negative regulation of tissue kallikrein-kinin cascade","synonyms":[{"name":"down regulation of tissue kallikrein-kinin cascade","type":"exact"},{"name":"down-regulation of tissue kallikrein-kinin cascade","type":"exact"},{"name":"downregulation of tissue kallikrein-kinin cascade","type":"exact"},{"name":"inhibition of tissue kallikrein-kinin cascade","type":"narrow"},{"name":"negative regulation of glandular kallikrein-kinin cascade","type":"exact"}],"termid":"GO:0002546"}


id: PBO:0039267
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"aldolase, fructose-bisphosphate A","termid":"PBO:0039267"}


id: MOD:00364
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-lysine residue to 5-hydroxy-N6,N6,N6-trimethyl-L-lysine.","definition_xrefs":["PubMed:14661085","RESID:AA0359","Unimod:445#K","PubMed:11349130"],"direct_ancestors":[{"relation_name":"has_functional_parent","term_name":"5-hydroxy-L-lysine","termid":"MOD:00037"},{"relation_name":"has_functional_parent","term_name":"N6,N6,N6-trimethyl-L-lysine","termid":"MOD:00083"},{"relation_name":"is_a","term_name":"N-methylated residue","termid":"MOD:00602"},{"relation_name":"is_a","term_name":"modified L-lysine residue","termid":"MOD:00912"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:00427"}],"interesting_parent_ids":["MOD:00427"],"is_obsolete":false,"name":"5-hydroxy-N6,N6,N6-trimethyl-L-lysine","synonyms":[{"name":"(2R,5Xi)-5-amino-5-carboxy-2-hydroxy-N,N,N-trimethylpentan-1-aminium","type":"exact"},{"name":"(2Xi,5S)-5-amino-5-carboxy-2-hydroxy-N,N,N-trimethylpentanaminium","type":"exact"},{"name":"(2Xi,5S)-5-azanyl-5-carboxy-2-hydroxy-N,N,N-trimethylpentanazanium","type":"exact"},{"name":"5-hydroxy-N(zeta)-trimethyllysine","type":"exact"},{"name":"5-hydroxy-N6,N6,N6-trimethyl","type":"related"},{"name":"5-hydroxy-N6,N6,N6-trimethyl-L-lysine","type":"exact"},{"name":"5-hydroxy-N6,N6,N6-trimethyllysin-N6-ium","type":"exact"},{"name":"5-hydroxy-N6,N6,N6-trimethyllysine cation","type":"exact"},{"name":"5-hydroxylated N6,N6,N6-trimethylated L-lysine","type":"exact"},{"name":"5HyN6Me3Lys","type":"exact"},{"name":"Hydroxytrimethyl","type":"related"},{"name":"MOD_RES N6,N6,N6-trimethyl-5-hydroxylysine","type":"exact"},{"name":"alpha-amino-epsilon-dimethylamino-delta-hydroxycaproic acid","type":"exact"},{"name":"delta-hydroxy-epsilon-N,N,N-trimethyllysine","type":"exact"},{"name":"lysine derivative Lys(z)","type":"exact"}],"termid":"MOD:00364"}


id: PBO:0000521
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transcription factor TFIIH complex subunit Rad15","termid":"PBO:0000521"}


id: GO:0010018
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The series of molecular signals initiated upon sensing of far red light by a photoreceptor molecule. Far red light is electromagnetic radiation of wavelength 700-800nm. An example of this response is seen at the beginning of many plant species developmental stages. These include germination, and the point when cotyledon expansion is triggered. In certain species these processes take place in response to absorption of red light by the pigment molecule phytochrome, but the signal can be reversed by exposure to far red light. During the initial phase the phytochrome molecule is only present in the red light absorbing form, but on absorption of red light it changes to a far red light absorbing form, triggering progress through development. An immediate short period of exposure to far red light entirely returns the pigment to its initial state and prevents triggering of the developmental process. A thirty minute break between red and subsequent far red light exposure renders the red light effect irreversible, and development then occurs regardless of whether far red light exposure subsequently occurs.","definition_xrefs":["GOC:lr","GOC:sm","GOC:mtg_far_red"],"direct_ancestors":[{"relation_name":"is_a","term_name":"red or far-red light signaling pathway","termid":"GO:0010017"},{"relation_name":"is_a","term_name":"cellular response to far red light","termid":"GO:0071490"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"far-red light signaling pathway","synonyms":[{"name":"far red light signalling pathway","type":"exact"},{"name":"far red signaling pathway","type":"exact"},{"name":"far-red light signal transduction","type":"exact"}],"termid":"GO:0010018"}


id: PBO:0041776
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"calpain 15","termid":"PBO:0041776"}


id: GO:1901478
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Enables the transfer of amitrole from one side of a membrane to the other.","definition_xrefs":["GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"azole transmembrane transporter activity","termid":"GO:1901474"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0005215","GO:0022857"],"is_obsolete":false,"name":"aminotriazole transmembrane transporter activity","secondary_identifiers":["GO:0015241"],"synonyms":[{"name":"aminotriazole transporter activity","type":"broad"}],"termid":"GO:1901478"}


id: GO:0047760
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: ATP + an acid + CoA = AMP + diphosphate + an acyl-CoA.","definition_xrefs":["EC:6.2.1.2","MetaCyc:BUTYRATE--COA-LIGASE-RXN"],"direct_ancestors":[{"relation_name":"is_a","term_name":"CoA-ligase activity","termid":"GO:0016405"},{"relation_name":"is_a","term_name":"acid-thiol ligase activity","termid":"GO:0016878"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016874"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016874"],"is_obsolete":false,"name":"butyrate-CoA ligase activity","secondary_identifiers":["RHEA:24336","Reactome:R-HSA-8875013"],"synonyms":[{"name":"L-(+)-3-hydroxybutyryl CoA ligase activity","type":"related"},{"name":"acyl-activating enzyme activity","type":"related"},{"name":"butanoate:CoA ligase (AMP-forming)","type":"related"},{"name":"butyryl-CoA synthetase activity","type":"related"},{"name":"butyryl-coenzyme A synthetase activity","type":"related"},{"name":"fatty acid activating enzyme","type":"related"},{"name":"fatty acid thiokinase (medium chain) activity","type":"related"},{"name":"fatty acyl coenzyme A synthetase activity","type":"related"},{"name":"medium chain acyl-CoA synthetase activity","type":"related"},{"name":"short-chain acyl-CoA synthetase activity","type":"related"}],"termid":"GO:0047760"}


id: PBO:0003688
data:
  {"annotation_feature_type":"gene","cv_name":"EC numbers","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"2.7.7.4","termid":"PBO:0003688"}


id: FYPO:0006668
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A physical cellular phenotype observed during G0 phase in which the size, shape, or structure of the nucleus is normal (i.e. indistinguishable from wild type).","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal nuclear morphology","termid":"FYPO:0001673"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000257"}],"interesting_parent_ids":["FYPO:0000257","FYPO:0000002"],"is_obsolete":false,"name":"normal nuclear morphology during G0","synonyms":[{"name":"normal nuclear morphology during cell quiescence","type":"exact"},{"name":"normal nuclear morphology during quiescence","type":"exact"}],"termid":"FYPO:0006668"}


id: PBO:0077849
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"triosephosphate isomerase 1","termid":"PBO:0077849"}


id: FYPO:0005019
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell cycle phenotype observed in the vegetative growth phase of the life cycle in which the duration of septum assembly is normal (i.e. indistinguishable from wild type).","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal septum assembly","termid":"FYPO:0000673"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001312"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000257"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0000257","FYPO:0001312","FYPO:0001320"],"is_obsolete":false,"name":"normal duration of septum assembly","synonyms":[{"name":"normal duration of division septum assembly","type":"exact"},{"name":"normal duration of septation","type":"broad"},{"name":"normal duration of septum assembly during mitotic cell cycle","type":"related"},{"name":"normal duration of septum assembly during vegetative growth","type":"exact"}],"termid":"FYPO:0005019"}


id: PR:Q9USX8
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- lea1 gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q9USX8"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"U2 small nuclear ribonucleoprotein A' (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC1861.08c","synonyms":[{"name":"Spom972h-lea1","type":"exact"},{"name":"U2 snRNP A' (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:Q9USX8"}


id: PBO:0046872
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"FAM3 metabolism regulating signaling molecule C","termid":"PBO:0046872"}


id: GO:0061799
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: (8S)-3',8-cyclo-7,8-dihydroguanosine 5'-triphosphate = cyclic pyranopterin phosphate + diphosphate.","definition_xrefs":["PMID:25896388","GOC:dph","GOC:ik"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phosphorus-oxygen lyase activity","termid":"GO:0016849"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016829"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0016829","GO:0003824"],"is_obsolete":false,"name":"cyclic pyranopterin monophosphate synthase activity","secondary_identifiers":["EC:4.6.1.17","RHEA:49580","MetaCyc:RXN-17809"],"termid":"GO:0061799"}


id: PBO:0049528
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"H2AZ2 divergent transcript","termid":"PBO:0049528"}


id: GO:2000733
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of glial cell-derived neurotrophic factor receptor signaling pathway involved in ureteric bud formation.","definition_xrefs":["GOC:obol"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of signal transduction","termid":"GO:0009966"},{"relation_name":"regulates","term_name":"glial cell-derived neurotrophic factor receptor signaling pathway involved in ureteric bud formation","termid":"GO:2000701"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"regulation of glial cell-derived neurotrophic factor receptor signaling pathway involved in ureteric bud formation","synonyms":[{"name":"regulation of GDNF receptor signaling pathway of ureteric bud formation","type":"exact"},{"name":"regulation of glial cell derived neurotrophic factor receptor signaling pathway of ureteric bud formation","type":"exact"},{"name":"regulation of glial cell line-derived neurotrophic factor receptor signalling pathway of ureteric bud formation","type":"exact"},{"name":"regulation of glial cell-derived neurotrophic factor receptor signaling pathway of ureteric bud formation","type":"exact"},{"name":"regulation of glial cell-derived neurotrophic factor receptor signalling pathway of ureteric bud formation","type":"exact"}],"termid":"GO:2000733"}


id: PBO:0068422
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"arginyl aminopeptidase","termid":"PBO:0068422"}


id: GO:0120256
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of an olefinic compound, any compound which contains a carbon-carbon double bond (aka C=C).","definition_xrefs":["GOC:krc"],"direct_ancestors":[{"relation_name":"is_a","term_name":"olefinic compound metabolic process","termid":"GO:0120254"},{"relation_name":"is_a","term_name":"organic substance catabolic process","termid":"GO:1901575"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"olefinic compound catabolic process","synonyms":[{"name":"alkene substituted compound breakdown","type":"exact"},{"name":"alkene substituted compound catabolic process","type":"exact"},{"name":"alkene substituted compound catabolism","type":"exact"},{"name":"alkene substituted compound degradation","type":"exact"}],"termid":"GO:0120256"}


id: GO:0047170
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: D-glucarate + sinapoyl-CoA = 2-O-sinapoyl-D-glucarate + CoA.","definition_xrefs":["EC:2.3.1.131","RHEA:23308"],"direct_ancestors":[{"relation_name":"is_a","term_name":"O-hydroxycinnamoyltransferase activity","termid":"GO:0050737"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016746"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016746","GO:0003674","GO:0016740","GO:0003824"],"is_obsolete":false,"name":"glucarate O-hydroxycinnamoyltransferase activity","secondary_identifiers":["MetaCyc:2.3.1.131-RXN","KEGG_REACTION:R02899"],"synonyms":[{"name":"sinapoyl-CoA:glucarate O-(hydroxycinnamoyl)transferase activity","type":"related"}],"termid":"GO:0047170"}


id: PBO:0018056
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chorein homolog Vps13a (predicted)","termid":"PBO:0018056"}


id: GO:0002399
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The aggregation, arrangement and bonding together of a set of components to form an MHC class II protein complex.","definition_xrefs":["PMID:15771591","ISBN:0781735149","GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"MHC protein complex assembly","termid":"GO:0002396"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0065003"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0044085"}],"interesting_parent_ids":["GO:0008150","GO:0044085","GO:0065003"],"is_obsolete":false,"name":"MHC class II protein complex assembly","termid":"GO:0002399"}


id: PR:O60085
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A methionine aminopeptidase 2 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx","OMA:SCHPO03176"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"methionine aminopeptidase 2 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC14C8.03","secondary_identifiers":["UniProtKB:O60085"],"synonyms":[{"name":"MAP 2 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"MetAP 2 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-METAP2","type":"exact"},{"name":"peptidase M (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:O60085"}


id: PBO:0052284
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"kinase insert domain receptor","termid":"PBO:0052284"}


id: PBO:0047507
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"FER1L6 antisense RNA 2","termid":"PBO:0047507"}


id: PBO:0030795
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abolished_protein_localization_to_mitotic_spindle_pole_body","termid":"PBO:0030795"}


id: PBO:0062253
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 5 subfamily BT member 1 pseudogene","termid":"PBO:0062253"}


id: PBO:0041272
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"complement C1q like 4","termid":"PBO:0041272"}


id: FYPO:0004374
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype in which the localization of a protein to the cytoplasm is abolished when the cell is subject to glucose starvation.","definition_xrefs":["PomBase:al","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abolished protein localization","termid":"FYPO:0001375"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001985","FYPO:0000138","FYPO:0005447"],"is_obsolete":false,"name":"abolished protein localization to cytoplasm during glucose starvation","synonyms":[{"name":"abolished protein localisation to cytoplasm during glucose starvation","type":"exact"},{"name":"abolished protein localization to cytoplasm during glucose depletion","type":"exact"},{"name":"abolished protein localization to cytoplasm during glucose deprivation","type":"exact"},{"name":"abolished protein localization to cytoplasm during glucose limitation","type":"related"},{"name":"protein localization to cytoplasm abolished during glucose starvation","type":"exact"}],"termid":"FYPO:0004374"}


id: PBO:0066723
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RN7SK pseudogene 20","termid":"PBO:0066723"}


id: PBO:0031630
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_spore_germination_frequency","termid":"PBO:0031630"}


id: PBO:0059911
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MT-ND1 pseudogene 34","termid":"PBO:0059911"}


id: PBO:0088504
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"U2 snRNP-associated protein Sap62","termid":"PBO:0088504"}


id: PR:O60102
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"An ATP-binding cassette sub-family E member 1 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO04015","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"translation initiation factor rli1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC14F5.06","secondary_identifiers":["UniProtKB:O60102"],"synonyms":[{"name":"ATP-binding cassette sub-family E member rli1 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"RNase L inhibitor (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-ABCE1","type":"exact"}],"termid":"PR:O60102"}


id: PBO:0056715
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"menin 1","termid":"PBO:0056715"}


id: PBO:0066448
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA exonuclease 1 homolog","termid":"PBO:0066448"}


id: PBO:0087540
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Subunit of RAVE complex (Rav1p, Rav2p, Skp1p); the RAVE complex associates with the V1 domain of the vacuolar membrane (H+)-ATPase (V-ATPase) and promotes assembly and reassembly of the holoenzyme","termid":"PBO:0087540"}


id: PBO:0051281
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"immunoglobulin kappa variable 1-16","termid":"PBO:0051281"}


id: GO:0010981
data:
  {"annotated_genes":["SJAG_00424","SJAG_04668","SJAG_00610","SJAG_01787","SJAG_04771","SJAG_04666","SJAG_04462","SJAG_03705","SJAG_02278"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[83284,88032],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0140748"},{"annotations":[100703,112968,98262,88018,86445],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0090334"},{"annotations":[85156,88038,90504,98264],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0070610"}]},"cv_name":"biological_process","definition":"Any process that modulates the rate, frequency or extent of cell wall macromolecule metabolism. Cell wall macromolecule metabolic processes are the chemical reactions and pathways involving macromolecules forming, or destined to form, part of the cell wall. A cell wall is a rigid or semi-rigid envelope lying outside the cell membrane of plant, fungal and most prokaryotic cells, maintaining their shape and protecting them from osmotic lysis.","definition_xrefs":["GOC:tb","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of macromolecule metabolic process","termid":"GO:0060255"},{"relation_name":"regulates","term_name":"cell wall macromolecule metabolic process","termid":"GO:0044036"}],"gene_count":9,"genes_by_uniquename":{"SJAG_00424":null,"SJAG_00610":null,"SJAG_01787":null,"SJAG_02278":null,"SJAG_03705":null,"SJAG_04462":null,"SJAG_04666":null,"SJAG_04668":null,"SJAG_04771":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of cell wall macromolecule metabolic process","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0010981","terms_by_termid":{"GO:0070610":null,"GO:0090334":null,"GO:0140748":null}}


id: SO:0002369
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A scaRNA possessing a box C/D sequence motif, guiding the methylation of snRNAs.","definition_xrefs":["PMID:17099227","PMID:24659245"],"direct_ancestors":[{"relation_name":"is_a","term_name":"scaRNA","termid":"SO:0002095"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"C_D_box_scaRNA","synonyms":[{"name":"C/D scaRNA","type":"exact"}],"termid":"SO:0002369"}


id: PBO:0067548
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 697, pseudogene","termid":"PBO:0067548"}


id: PBO:0034675
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_monoacylglycerol_phosphate_chain_length","termid":"PBO:0034675"}


id: GO:0033709
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: D-arabinitol + NADP+ = D-ribulose + NADPH + H+.","definition_xrefs":["EC:1.1.1.287"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor","termid":"GO:0016616"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0016491","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"D-arabinitol dehydrogenase, D-ribulose forming (NADP+) activity","secondary_identifiers":["KEGG_REACTION:R07144","RHEA:11868","MetaCyc:RXN-7972"],"synonyms":[{"name":"ARD1p","type":"related"},{"name":"D-arabinitol dehydrogenase 1 activity","type":"broad"},{"name":"D-arabinitol:NADP+ dehydrogenase activity","type":"broad"},{"name":"NADP+-dependent D-arabinitol dehydrogenase activity","type":"broad"}],"termid":"GO:0033709"}


id: PBO:0079214
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"testis specific serine kinase 6","termid":"PBO:0079214"}


id: GO:0021564
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of the vagus nerve over time, from its formation to the mature structure. This nerve is primarily sensory but also has visceromotor components. It originates in the brain stem and controls many autonomic functions of the heart, lungs, stomach, pharynx, larynx, trachea, esophagus and other gastrointestinal tract components. It controls some motor functions such as speech. The sensory branches mediate sensation from the pharynx, larynx, thorax and abdomen; it also innervates taste buds in the epiglottis.","definition_xrefs":["GOC:cls","GOC:dgh","GOC:jid","GO_REF:0000021","ISBN:0838580343","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cranial nerve development","termid":"GO:0021545"},{"relation_name":"part_of","term_name":"preganglionic parasympathetic fiber development","termid":"GO:0021783"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"vagus nerve development","synonyms":[{"name":"CN X development","type":"related"},{"name":"cranial nerve 10 development","type":"related"},{"name":"cranial nerve X development","type":"exact"}],"termid":"GO:0021564"}


id: PBO:0079103
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TSC complex subunit 1","termid":"PBO:0079103"}


id: PBO:0002004
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RecQ mediated genome instability protein Rmi1 (predicted)","termid":"PBO:0002004"}


id: GO:0032810
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a sterol response element (SRE), a nonpalindromic sequence found in the promoters of genes involved in lipid metabolism.","definition_xrefs":["GOC:vk","PMID:11994399"],"direct_ancestors":[{"relation_name":"is_a","term_name":"RNA polymerase II cis-regulatory region sequence-specific DNA binding","termid":"GO:0000978"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003677"},{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0000976"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0005488","GO:0000976","GO:0003677","GO:0003674"],"is_obsolete":false,"name":"sterol response element binding","synonyms":[{"name":"SRE binding","type":"exact"}],"termid":"GO:0032810"}


id: PBO:0028869
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_snoRNA_level","termid":"PBO:0028869"}


id: PBO:0079577
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ubiquitin conjugating enzyme E2 A","termid":"PBO:0079577"}


id: GO:0016170
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to an interleukin-15 receptor.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cytokine receptor binding","termid":"GO:0005126"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0005515"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0005488","GO:0005515","GO:0003674"],"is_obsolete":false,"name":"interleukin-15 receptor binding","synonyms":[{"name":"IL-15","type":"narrow"},{"name":"interleukin-15 receptor ligand","type":"narrow"}],"termid":"GO:0016170"}


id: PBO:0044446
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cytochrome P450 family 4 subfamily F member 24, pseudogene","termid":"PBO:0044446"}


id: PATO:0000336
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A color quality inhering in a bearer by virtue of the bearer's having color.","definition_xrefs":["PATOC:GVG"],"direct_ancestors":[{"relation_name":"is_a","term_name":"color","termid":"PATO:0000014"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"colored","secondary_identifiers":["PATO:0000332"],"synonyms":[{"name":"pigmented","type":"related"}],"termid":"PATO:0000336"}


id: PBO:0033803
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_mitotic_cell_cycle_regulation_during_cellular_response_to_DNA_double-strand_break","termid":"PBO:0033803"}


id: GO:1990178
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A protein-DNA complex that consists of HU heterodimers (an alpha and a beta chain) assembled into octamers along DNA. HU binds to double-stranded DNA in a structure- and sequence-specific manner and bends the DNA into a nucleosome-like structure.","definition_xrefs":["PMID:17360520","GOC:bhm"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein-DNA complex","termid":"GO:0032993"},{"relation_name":"is_a","term_name":"DNA bending complex","termid":"GO:1990104"},{"relation_name":"part_of","term_name":"bacterial nucleoid","termid":"GO:0043590"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0032991","GO:0005575"],"is_obsolete":false,"name":"HU-DNA complex","synonyms":[{"name":"HU complex","type":"broad"}],"termid":"GO:1990178"}


id: PBO:0084577
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Merged open reading frame; does not encode a discrete protein; YAR044W was originally annotated as an independent ORF, but as a result of a sequence change, it was merged with an adjacent ORF into a single reading frame, designated YAR042W","termid":"PBO:0084577"}


id: GO:0005324
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Enables the transfer of a long-chain fatty acid from one side of a membrane to the other. A long-chain fatty acid has an aliphatic tail containing 13 to 22 carbons.","definition_xrefs":["ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"lipid transporter activity","termid":"GO:0005319"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005215"}],"interesting_parent_ids":["GO:0003674","GO:0005215"],"is_obsolete":false,"name":"long-chain fatty acid transporter activity","secondary_identifiers":["GO:0005325","Reactome:R-HSA-2046087","Reactome:R-HSA-2046093","Reactome:R-HSA-382575","Reactome:R-HSA-434381","GO:0008562","Reactome:R-HSA-390393","Reactome:R-HSA-5684043"],"termid":"GO:0005324"}


id: PBO:0052591
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"karyopherin subunit alpha 2","termid":"PBO:0052591"}


id: PBO:0083175
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Dubious open reading frame; unlikely to encode a functional protein, based on available experimental and comparative sequence data; completely overlaps origin of replication ARS918, partially overlaps ORF RPB3/YIL021W","termid":"PBO:0083175"}


id: PBO:0072465
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein S29 pseudogene 29","termid":"PBO:0072465"}


id: GO:0090114
data:
  {"annotated_genes":["SJAG_03907","SJAG_00284","SJAG_02349","SJAG_00072","SJAG_03558","SJAG_05344","SJAG_05345","SJAG_03153","SJAG_02539"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[72883],"is_not":false,"summary":null,"term":"GO:0090114"},{"annotations":[91076],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0048208"},{"annotations":[74521,74899,74168,71512,75466,75853,77282],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0090110"}]},"cv_name":"biological_process","definition":"The evagination of an endoplasmic reticulum membrane, resulting in formation of a COPII-coated vesicle.","definition_xrefs":["GOC:ascb_2009","GOC:dph","GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"vesicle budding from membrane","termid":"GO:0006900"},{"relation_name":"part_of","term_name":"endoplasmic reticulum to Golgi vesicle-mediated transport","termid":"GO:0006888"}],"gene_count":9,"genes_by_uniquename":{"SJAG_00072":null,"SJAG_00284":null,"SJAG_02349":null,"SJAG_02539":null,"SJAG_03153":null,"SJAG_03558":null,"SJAG_03907":null,"SJAG_05344":null,"SJAG_05345":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0061024"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0016192"},{"rel_name":"part_of","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0006810","GO:0008150","GO:0061024","GO:0016192"],"is_obsolete":false,"name":"COPII-coated vesicle budding","references_by_uniquename":{"GO_REF:0000107":null,"PMID:21873635":null},"synonyms":[{"name":"COPII vesicle budding","type":"related"},{"name":"ER exit","type":"narrow"},{"name":"ER vesicle budding","type":"broad"}],"termid":"GO:0090114","terms_by_termid":{"GO:0048208":null,"GO:0090110":null,"GO:0090114":null}}


id: PR:P38938
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- cek1 gene.","definition_xrefs":["PRO:DNx","UniProtKB:P38938"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"serine/threonine-protein kinase cek1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC1450.11c","synonyms":[{"name":"Spom972h-cek1","type":"exact"}],"termid":"PR:P38938"}


id: GO:0016814
data:
  {"annotated_genes":["SJAG_01054","SJAG_03771","SJAG_04123","SJAG_01673","SJAG_04711","SJAG_02400","SJAG_04681","SJAG_04380","SJAG_00376","SJAG_04156","SJAG_00352","SJAG_03275","SJAG_04189","SJAG_01997","SJAG_00106"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[75616],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0003876"},{"annotations":[70136],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004126"},{"annotations":[103692],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004132"},{"annotations":[84921],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0047844"},{"annotations":[112256],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0008835"},{"annotations":[70365],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0003934"},{"annotations":[83241,96608],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0003935"},{"annotations":[77637],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0008892"},{"annotations":[70131],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0003937"},{"annotations":[75047,75699],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004477"},{"annotations":[103196],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004635"},{"annotations":[96576,99639],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0052717"},{"annotations":[71742],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0043829"}]},"cv_name":"molecular_function","definition":"Catalysis of the hydrolysis of any non-peptide carbon-nitrogen bond in a cyclic amidine, a compound of the form R-C(=NH)-NH2.","definition_xrefs":["ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds","termid":"GO:0016810"}],"gene_count":15,"genes_by_uniquename":{"SJAG_00106":null,"SJAG_00352":null,"SJAG_00376":null,"SJAG_01054":null,"SJAG_01673":null,"SJAG_01997":null,"SJAG_02400":null,"SJAG_03275":null,"SJAG_03771":null,"SJAG_04123":null,"SJAG_04156":null,"SJAG_04189":null,"SJAG_04380":null,"SJAG_04681":null,"SJAG_04711":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016810"},{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003824","GO:0016787","GO:0016810","GO:0003674"],"is_obsolete":false,"name":"hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines","references_by_uniquename":{"GO_REF:0000107":null,"PMID:21873635":null},"secondary_identifiers":["EC:3.5.4.-"],"termid":"GO:0016814","terms_by_termid":{"GO:0003876":null,"GO:0003934":null,"GO:0003935":null,"GO:0003937":null,"GO:0004126":null,"GO:0004132":null,"GO:0004477":null,"GO:0004635":null,"GO:0008835":null,"GO:0008892":null,"GO:0043829":null,"GO:0047844":null,"GO:0052717":null}}


id: GO:0018739
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 4-hydroxybenzoyl-CoA + H2O = 4-hydroxybenzoate + CoA + H+.","definition_xrefs":["EC:3.1.2.23","RHEA:11948"],"direct_ancestors":[{"relation_name":"is_a","term_name":"acyl-CoA hydrolase activity","termid":"GO:0016289"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016788"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0016787","GO:0003824","GO:0016788"],"is_obsolete":false,"name":"4-hydroxybenzoyl-CoA thioesterase activity","secondary_identifiers":["KEGG_REACTION:R01301","MetaCyc:3.1.2.23-RXN","UM-BBD_reactionID:r0141"],"synonyms":[{"name":"4-hydroxybenzoyl-CoA hydrolase activity","type":"related"},{"name":"4-hydroxybenzoyl-CoA thiolesterase activity","type":"exact"}],"termid":"GO:0018739"}


id: GO:0008362
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Synthesis, including the chemical reactions and pathways resulting in the formation of chitin and other components, and deposition of a chitin-based embryonic cuticle by the underlying epidermal epithelium. This tough, waterproof cuticle layer is essential to provide structural integrity of the larval body. An example of this is found in Drosophila melanogaster.","definition_xrefs":["GOC:bf","GOC:mtg_sensu","PMID:12019232"],"direct_ancestors":[{"relation_name":"is_a","term_name":"chitin-based cuticle development","termid":"GO:0040003"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"chitin-based embryonic cuticle biosynthetic process","synonyms":[{"name":"embryonic cuticle anabolism","type":"broad"},{"name":"embryonic cuticle biosynthetic process","type":"broad"},{"name":"embryonic cuticle formation","type":"broad"},{"name":"embryonic cuticle synthesis","type":"broad"}],"termid":"GO:0008362"}


id: GO:0016209
data:
  {"annotated_genes":["SJAG_00489","SJAG_03653","SJAG_04399","SJAG_03303","SJAG_01216","SJAG_04823","SJAG_01162","SJAG_00668","SJAG_00141","SJAG_01199","SJAG_02515","SJAG_04125","SJAG_01292","SJAG_03166","SJAG_05181","SJAG_04953","SJAG_04788","SJAG_04632","SJAG_02630","SJAG_01734"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[95473],"is_not":false,"summary":null,"term":"GO:0016209"},{"annotations":[71114],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004096"},{"annotations":[93475,85124,94771,58741],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004602"},{"annotations":[77821],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004362"},{"annotations":[102140],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004601"},{"annotations":[100664],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0051920"},{"annotations":[75913],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0032542"},{"annotations":[95627,76169,99412,105415],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004784"},{"annotations":[78174,104138,70413,90759,75116],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0008379"},{"annotations":[78271,73016],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004791"}]},"cv_name":"molecular_function","definition":"Inhibition of the reactions brought about by dioxygen (O2) or peroxides. Usually the antioxidant is effective because it can itself be more easily oxidized than the substance protected. The term is often applied to components that can trap free radicals, thereby breaking the chain reaction that normally leads to extensive biological damage.","definition_xrefs":["ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"molecular_function","termid":"GO:0003674"}],"gene_count":20,"genes_by_uniquename":{"SJAG_00141":null,"SJAG_00489":null,"SJAG_00668":null,"SJAG_01162":null,"SJAG_01199":null,"SJAG_01216":null,"SJAG_01292":null,"SJAG_01734":null,"SJAG_02515":null,"SJAG_02630":null,"SJAG_03166":null,"SJAG_03303":null,"SJAG_03653":null,"SJAG_04125":null,"SJAG_04399":null,"SJAG_04632":null,"SJAG_04788":null,"SJAG_04823":null,"SJAG_04953":null,"SJAG_05181":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674"],"is_obsolete":false,"name":"antioxidant activity","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000107":null,"PMID:21873635":null},"termid":"GO:0016209","terms_by_termid":{"GO:0004096":null,"GO:0004362":null,"GO:0004601":null,"GO:0004602":null,"GO:0004784":null,"GO:0004791":null,"GO:0008379":null,"GO:0016209":null,"GO:0032542":null,"GO:0051920":null}}


id: GO:1903658
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of type IV pilus biogenesis.","definition_xrefs":["GOC:TermGenie","GO_REF:0000058","PMID:25049409"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of cell projection organization","termid":"GO:0031346"},{"relation_name":"is_a","term_name":"regulation of type IV pilus biogenesis","termid":"GO:1903656"},{"relation_name":"positively_regulates","term_name":"type IV pilus assembly","termid":"GO:0043683"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0044085"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0044085","GO:0008150"],"is_obsolete":false,"name":"positive regulation of type IV pilus biogenesis","synonyms":[{"name":"activation of TFP biogenesis","type":"narrow"},{"name":"activation of type 4 pilus biogenesis","type":"narrow"},{"name":"activation of type IV fimbria assembly","type":"narrow"},{"name":"activation of type IV fimbria biogenesis","type":"narrow"},{"name":"activation of type IV fimbriae assembly","type":"narrow"},{"name":"activation of type IV fimbriae biogenesis","type":"narrow"},{"name":"activation of type IV fimbrial assembly","type":"narrow"},{"name":"activation of type IV fimbrial biogenesis","type":"narrow"},{"name":"activation of type IV fimbrium assembly","type":"narrow"},{"name":"activation of type IV fimbrium biogenesis","type":"narrow"},{"name":"activation of type IV pilus biogenesis","type":"narrow"},{"name":"activation of type IV pilus biosynthesis","type":"narrow"},{"name":"positive regulation of TFP biogenesis","type":"exact"},{"name":"positive regulation of type 4 pilus biogenesis","type":"exact"},{"name":"positive regulation of type IV fimbria assembly","type":"exact"},{"name":"positive regulation of type IV fimbria biogenesis","type":"exact"},{"name":"positive regulation of type IV fimbriae assembly","type":"exact"},{"name":"positive regulation of type IV fimbriae biogenesis","type":"exact"},{"name":"positive regulation of type IV fimbrial assembly","type":"exact"},{"name":"positive regulation of type IV fimbrial biogenesis","type":"exact"},{"name":"positive regulation of type IV fimbrium assembly","type":"exact"},{"name":"positive regulation of type IV fimbrium biogenesis","type":"exact"},{"name":"positive regulation of type IV pilus biosynthesis","type":"exact"},{"name":"up regulation of TFP biogenesis","type":"exact"},{"name":"up regulation of type 4 pilus biogenesis","type":"exact"},{"name":"up regulation of type IV fimbria assembly","type":"exact"},{"name":"up regulation of type IV fimbria biogenesis","type":"exact"},{"name":"up regulation of type IV fimbriae assembly","type":"exact"},{"name":"up regulation of type IV fimbriae biogenesis","type":"exact"},{"name":"up regulation of type IV fimbrial assembly","type":"exact"},{"name":"up regulation of type IV fimbrial biogenesis","type":"exact"},{"name":"up regulation of type IV fimbrium assembly","type":"exact"},{"name":"up regulation of type IV fimbrium biogenesis","type":"exact"},{"name":"up regulation of type IV pilus biogenesis","type":"exact"},{"name":"up regulation of type IV pilus biosynthesis","type":"exact"},{"name":"up-regulation of TFP biogenesis","type":"exact"},{"name":"up-regulation of type 4 pilus biogenesis","type":"exact"},{"name":"up-regulation of type IV fimbria assembly","type":"exact"},{"name":"up-regulation of type IV fimbria biogenesis","type":"exact"},{"name":"up-regulation of type IV fimbriae assembly","type":"exact"},{"name":"up-regulation of type IV fimbriae biogenesis","type":"exact"},{"name":"up-regulation of type IV fimbrial assembly","type":"exact"},{"name":"up-regulation of type IV fimbrial biogenesis","type":"exact"},{"name":"up-regulation of type IV fimbrium assembly","type":"exact"},{"name":"up-regulation of type IV fimbrium biogenesis","type":"exact"},{"name":"up-regulation of type IV pilus biogenesis","type":"exact"},{"name":"up-regulation of type IV pilus biosynthesis","type":"exact"},{"name":"upregulation of TFP biogenesis","type":"exact"},{"name":"upregulation of type 4 pilus biogenesis","type":"exact"},{"name":"upregulation of type IV fimbria assembly","type":"exact"},{"name":"upregulation of type IV fimbria biogenesis","type":"exact"},{"name":"upregulation of type IV fimbriae assembly","type":"exact"},{"name":"upregulation of type IV fimbriae biogenesis","type":"exact"},{"name":"upregulation of type IV fimbrial assembly","type":"exact"},{"name":"upregulation of type IV fimbrial biogenesis","type":"exact"},{"name":"upregulation of type IV fimbrium assembly","type":"exact"},{"name":"upregulation of type IV fimbrium biogenesis","type":"exact"},{"name":"upregulation of type IV pilus biogenesis","type":"exact"},{"name":"upregulation of type IV pilus biosynthesis","type":"exact"}],"termid":"GO:1903658"}


id: GO:0046434
data:
  {"annotated_genes":["SJAG_03373","SJAG_03828","SJAG_02247","SJAG_04048","SJAG_00633","SJAG_03797","SJAG_06621","SJAG_03903","SJAG_05314","SJAG_04334","SJAG_01519","SJAG_00244","SJAG_03977","SJAG_04870","SJAG_03676","SJAG_02093","SJAG_00461","SJAG_04169","SJAG_02161","SJAG_00027","SJAG_04067","SJAG_02009","SJAG_03091","SJAG_01595","SJAG_02369","SJAG_03660","SJAG_04110","SJAG_04311","SJAG_00321","SJAG_03852","SJAG_01055","SJAG_03204","SJAG_04192","SJAG_01310","SJAG_02945","SJAG_00409","SJAG_01012","SJAG_02481","SJAG_01970","SJAG_04495","SJAG_02091","SJAG_00605","SJAG_00839","SJAG_02135","SJAG_02796","SJAG_01974","SJAG_06622","SJAG_04487","SJAG_00685","SJAG_02107","SJAG_02100","SJAG_04939","SJAG_00622"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[108531,108532],"is_not":false,"summary":null,"term":"GO:0046434"},{"annotations":[77850],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1901911"},{"annotations":[111505],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006198"},{"annotations":[101180,99045,93516,104686,104685,100815,104688,90579,101181,104689,76796,98784,100814,104683,104687,104684,90109,93781,100816,111476],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0061621"},{"annotations":[77071],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0015938"},{"annotations":[112261,75138],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0009159"},{"annotations":[113629],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0009204"},{"annotations":[77849],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1901909"},{"annotations":[77848],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1901907"},{"annotations":[106683,112180],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0015964"},{"annotations":[94491],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0035863"},{"annotations":[77979],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0046081"},{"annotations":[101851,89575],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0046168"},{"annotations":[71670,93290,77356,76290,75667],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0046475"},{"annotations":[84349],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0061613"},{"annotations":[93701,106814],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0061688"},{"annotations":[84454,110197],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0071545"},{"annotations":[72228],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0019677"},{"annotations":[72231],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006742"},{"annotations":[72760,75430],"is_not":false,"rel_names":["negatively_regulates","regulates"],"summary":null,"term":"GO:0045820"},{"annotations":[70716],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0009134"},{"annotations":[112074],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0034638"},{"annotations":[89518],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006660"},{"annotations":[73954,97297,88982],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0009395"},{"annotations":[108501],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0009191"},{"annotations":[75499],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006256"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of organophosphates, any phosphate-containing organic compound.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"organophosphate metabolic process","termid":"GO:0019637"},{"relation_name":"is_a","term_name":"organic substance catabolic 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catabolic process","references_by_uniquename":{"GO_REF:0000107":null,"PMID:21873635":null},"synonyms":[{"name":"organophosphate breakdown","type":"exact"},{"name":"organophosphate catabolism","type":"exact"},{"name":"organophosphate degradation","type":"exact"}],"termid":"GO:0046434","terms_by_termid":{"GO:0006198":null,"GO:0006256":null,"GO:0006660":null,"GO:0006742":null,"GO:0009134":null,"GO:0009159":null,"GO:0009191":null,"GO:0009204":null,"GO:0009395":null,"GO:0015938":null,"GO:0015964":null,"GO:0019677":null,"GO:0034638":null,"GO:0035863":null,"GO:0045820":null,"GO:0046081":null,"GO:0046168":null,"GO:0046434":null,"GO:0046475":null,"GO:0061613":null,"GO:0061621":null,"GO:0061688":null,"GO:0071545":null,"GO:1901907":null,"GO:1901909":null,"GO:1901911":null}}


id: PBO:0065301
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"serine protease 8","termid":"PBO:0065301"}


id: GO:0075038
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that stops, prevents, or reduces the frequency, rate or extent symbiont appressorium maturation.","definition_xrefs":["GOC:pamgo_curators"],"gene_count":0,"genotype_count":0,"name":"obsolete negative regulation of appressorium maturation (obsolete GO:0075038)","synonyms":[{"name":"negative regulation of appressorium maturation on or near host","type":"related"},{"name":"negative regulation of maturation of appressorium on or near host","type":"exact"}],"termid":"GO:0075038"}


id: PBO:0002529
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ABC transporter Ybt1","termid":"PBO:0002529"}


id: GO:0044522
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process that begins with venom being forced into an organism by the bite or sting of another organism, killing heart myocytes and ultimately resulting in muscle damage in the bitten organism.","definition_xrefs":["GOC:jl","PMID:21150580","PMID:10620318","GOC:fj"],"direct_ancestors":[{"relation_name":"is_a","term_name":"envenomation resulting in muscle damage in another organism","termid":"GO:0044521"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"envenomation resulting in myocyte killing in another organism","synonyms":[{"name":"envenomation resulting in myocyte killing causing muscle damage in other organism","type":"exact"},{"name":"envenomation resulting in myocyte killing in other organism","type":"exact"}],"termid":"GO:0044522"}


id: PBO:0081816
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein 736 pseudogene 9, Y-linked","termid":"PBO:0081816"}


id: GO:0050972
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The series of events involved in echolocation in which a mechanical stimulus is received and converted into a molecular signal. The stimulus is in the form of a reflected sound wave (an echo), which the organism uses to determine the distance to the object that reflected the sound wave.","definition_xrefs":["GOC:dos","GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"detection of mechanical stimulus involved in sensory perception","termid":"GO:0050974"},{"relation_name":"part_of","term_name":"echolocation","termid":"GO:0050959"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"detection of mechanical stimulus involved in echolocation","synonyms":[{"name":"echolocation, detection of mechanical stimulus","type":"exact"},{"name":"echolocation, sensory detection of mechanical stimulus","type":"exact"},{"name":"echolocation, sensory transduction of mechanical stimulus","type":"exact"},{"name":"sensory detection of mechanical stimulus during echolocation","type":"exact"},{"name":"sensory transduction of mechanical stimulus during echolocation","type":"exact"}],"termid":"GO:0050972"}


id: PBO:0079463
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"trans-golgi network vesicle protein 23 homolog C","termid":"PBO:0079463"}


id: GO:0006771
data:
  {"annotated_genes":["SJAG_04845","SJAG_02360","SJAG_00376","SJAG_01054","SJAG_04711","SJAG_02491","SJAG_00491","SJAG_00480"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[75637,102129,76926,112254,71355,77491,83240,110849],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0009231"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways involving riboflavin (vitamin B2), the precursor for the coenzymes flavin mononucleotide (FMN) and flavin adenine dinucleotide (FAD).","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"water-soluble vitamin metabolic process","termid":"GO:0006767"},{"relation_name":"is_a","term_name":"flavin-containing compound metabolic process","termid":"GO:0042726"}],"gene_count":8,"genes_by_uniquename":{"SJAG_00376":null,"SJAG_00480":null,"SJAG_00491":null,"SJAG_01054":null,"SJAG_02360":null,"SJAG_02491":null,"SJAG_04711":null,"SJAG_04845":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0006766"}],"interesting_parent_ids":["GO:0008150","GO:0044281","GO:0006766"],"is_obsolete":false,"name":"riboflavin metabolic process","references_by_uniquename":{"GO_REF:0000107":null,"PMID:21873635":null},"secondary_identifiers":["Wikipedia:Riboflavin"],"synonyms":[{"name":"riboflavin metabolism","type":"exact"},{"name":"vitamin B2 metabolic process","type":"exact"},{"name":"vitamin B2 metabolism","type":"exact"},{"name":"vitamin G metabolic process","type":"exact"},{"name":"vitamin G metabolism","type":"exact"}],"termid":"GO:0006771","terms_by_termid":{"GO:0009231":null}}


id: PBO:0049203
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glutamate ionotropic receptor kainate type subunit 3","termid":"PBO:0049203"}


id: GO:0021841
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The creation and reception of signals that result in the movement of interneurons toward the signal, where this process is involved in migration from the subpallium to the cortex.","definition_xrefs":["GOC:dph","PMID:12626695","GOC:jid","GO_REF:0000021","GOC:dgh","GOC:cls"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive chemotaxis","termid":"GO:0050918"},{"relation_name":"part_of","term_name":"directional guidance of interneurons involved in migration from the subpallium to the cortex","termid":"GO:0021840"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"chemoattraction involved in interneuron migration from the subpallium to the cortex","synonyms":[{"name":"positive chemotaxis involved in interneuron migration from the subpallium to the cortex","type":"exact"}],"termid":"GO:0021841"}


id: PBO:0013777
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Mst2/NuA4 histone acetyltransferase complex subunit Eaf6","termid":"PBO:0013777"}


id: GO:1900564
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving chanoclavine-I.","definition_xrefs":["GOC:TermGenie","GOC:di"],"direct_ancestors":[{"relation_name":"is_a","term_name":"primary alcohol metabolic process","termid":"GO:0034308"},{"relation_name":"is_a","term_name":"ergot alkaloid metabolic process","termid":"GO:0035836"},{"relation_name":"is_a","term_name":"heterocycle metabolic process","termid":"GO:0046483"},{"relation_name":"is_a","term_name":"organic cyclic compound metabolic process","termid":"GO:1901360"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0019748"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0044281","GO:0019748","GO:0008150"],"is_obsolete":false,"name":"chanoclavine-I metabolic process","synonyms":[{"name":"chanoclavine-I metabolism","type":"exact"}],"termid":"GO:1900564"}


id: PBO:0001894
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glutathione S-transferase Gst3","termid":"PBO:0001894"}


id: PBO:0039478
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ankyrin repeat domain 20 family member A1","termid":"PBO:0039478"}


id: PBO:0064134
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pyruvate kinase M1/2 pseudogene 1","termid":"PBO:0064134"}


id: RO:0002335
data:
  {"annotation_feature_type":"gene","cv_name":"relationship","definition":"inverse of negatively regulates","direct_ancestors":[{"relation_name":"is_a","term_name":"regulated_by","termid":"RO:0002334"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"negatively_regulated_by","termid":"RO:0002335"}


id: MOD:01816
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-tryptophan residue to a 2'-hydroxy-L-tryptophan.","definition_xrefs":["RESID:AA0542","PubMed:11714714"],"direct_ancestors":[{"relation_name":"is_a","term_name":"monohydroxylated tryptophan","termid":"MOD:01622"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"2'-hydroxy-L-tryptophan","synonyms":[{"name":"(2S)-2-amino-3-(2-hydroxy-1H-indol-3-yl)propanoic acid","type":"exact"},{"name":"2'-hydroxy-L-tryptophan","type":"exact"},{"name":"2-azanyl-3-(2-hydroxy-1H-indol-3-yl)propanoic acid","type":"exact"},{"name":"2-hydroxy-L-tryptophan","type":"exact"},{"name":"2-hydroxy-tryptophan","type":"exact"}],"termid":"MOD:01816"}


id: PBO:0055813
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"lipin 1","termid":"PBO:0055813"}


id: PBO:0027122
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_zygotic_meiosis","termid":"PBO:0027122"}


id: GO:1903374
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The process whose specific outcome is the progression of a subarachnoid space over time, from its formation to the mature structure.","definition_xrefs":["GOC:TermGenie","GO_REF:0000094","Wikipedia:Subarachnoid_space","GOC:cjm"],"gene_count":0,"genotype_count":0,"name":"obsolete subarachnoid space development (obsolete GO:1903374)","synonyms":[{"name":"cavitas subarachnoidea development","type":"related"},{"name":"cavum subarachnoideale development","type":"related"},{"name":"spatium leptomeningeum development","type":"related"},{"name":"spatium subarachnoideum development","type":"related"},{"name":"subarachnoid cavity development","type":"related"}],"termid":"GO:1903374"}


id: PBO:0050645
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"heat shock protein 90 alpha family class A member 1","termid":"PBO:0050645"}


id: GO:0034777
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The volume enclosed by the membranes of a recycling endosome.","definition_xrefs":["GOC:rph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"endosome lumen","termid":"GO:0031904"},{"relation_name":"part_of","term_name":"recycling endosome","termid":"GO:0055037"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"part_of","termid":"GO:0031410"},{"rel_name":"part_of","termid":"GO:0005768"}],"interesting_parent_ids":["GO:0005737","GO:0031410","GO:0005768","GO:0005575"],"is_obsolete":false,"name":"recycling endosome lumen","termid":"GO:0034777"}


id: PBO:0029263
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-inviable_after_spore_germination,_without_cell_division,_swollen_binucleate_cell_with_central_constriction","termid":"PBO:0029263"}


id: PBO:0005021
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"threo-3-hydroxyaspartate ammonia-lyase (predicted)","termid":"PBO:0005021"}


id: GO:0018407
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The iodination of peptidyl-thyronine to form peptidyl-3',3'',5'-triiodo-L-thyronine (triiodothyronine).","definition_xrefs":["RESID:AA0177"],"gene_count":0,"genotype_count":0,"name":"obsolete peptidyl-thyronine iodination to form 3',3'',5'-triiodo-L-thyronine (obsolete GO:0018407)","synonyms":[{"name":"peptidyl-thyronine iodination to form triiodothyronine","type":"broad"}],"termid":"GO:0018407"}


id: PBO:0093832
data:
  {"annotation_feature_type":"gene","cv_name":"feature_relationshipprop_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"genotype_locus","termid":"PBO:0093832"}


id: PBO:0082047
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"2'-O-ribose methyltransferase; catalyzes the ribose methylation of the guanosine nucleotide at position 18 of tRNAs","termid":"PBO:0082047"}


id: FYPO:0004633
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which the observed rate of a protein kinase activity is decreased during the second meiotic nuclear division.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased protein kinase activity","termid":"FYPO:0001382"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000654"},{"rel_name":"is_a","termid":"FYPO:0000707"},{"rel_name":"is_a","termid":"FYPO:0000661"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000661","FYPO:0000652","FYPO:0000654","FYPO:0000707"],"is_obsolete":false,"name":"decreased protein kinase activity during meiosis II","synonyms":[{"name":"decreased protein kinase activity during second meiotic nuclear division","type":"exact"},{"name":"reduced protein kinase activity during meiosis II","type":"exact"}],"termid":"FYPO:0004633"}


id: GO:0033570
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Enables the transfer of transferrin from one side of a membrane to the other.","definition_xrefs":["GOC:mlg"],"gene_count":0,"genotype_count":0,"name":"obsolete transferrin transmembrane transporter activity (obsolete GO:0033570)","termid":"GO:0033570"}


id: PBO:0109606
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"family with sequence similarity 90 member A13","termid":"PBO:0109606"}


id: PBO:0065551
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"prostaglandin E receptor 4 pseudogene 1","termid":"PBO:0065551"}


id: GO:0098997
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Fusion of a viral membrane with the host cell outer membrane during viral entry.","definition_xrefs":["GOC:dos","VZ:3941"],"direct_ancestors":[{"relation_name":"is_a","term_name":"fusion of virus membrane with host plasma membrane","termid":"GO:0019064"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0061024"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0061024"],"is_obsolete":false,"name":"fusion of virus membrane with host outer membrane","synonyms":[{"name":"fusion of viral membrane with host outer membrane","type":"related"},{"name":"viral envelope fusion","type":"broad"},{"name":"viral envelope fusion with host outer membrane","type":"exact"},{"name":"viral penetration via membrane fusion","type":"broad"},{"name":"viral-cell fusion molecule activity","type":"related"}],"termid":"GO:0098997"}


id: PBO:0081465
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein 335","termid":"PBO:0081465"}


id: PBO:0074121
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"solute carrier family 30 member 6","termid":"PBO:0074121"}


id: PBO:0073247
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"septin 1","termid":"PBO:0073247"}


id: RO:0002157
data:
  {"annotation_feature_type":"gene","cv_name":"relationship","definition":"inverse of derived by descent from","direct_ancestors":[{"relation_name":"is_a","term_name":"evolutionarily_related_to","termid":"RO:0002320"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"has_derived_by_descendant","termid":"RO:0002157"}


id: PBO:0038534
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"abhydrolase domain containing 10, depalmitoylase","termid":"PBO:0038534"}


id: GO:0030072
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The regulated release of a peptide hormone from a cell.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"peptide secretion","termid":"GO:0002790"},{"relation_name":"is_a","term_name":"hormone secretion","termid":"GO:0046879"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"part_of","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0023052","GO:0006810","GO:0008150","GO:0051179"],"is_obsolete":false,"name":"peptide hormone secretion","termid":"GO:0030072"}


id: PBO:0077762
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TOMM20 pseudogene 4","termid":"PBO:0077762"}


id: PBO:0062847
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"osteocrin","termid":"PBO:0062847"}


id: FYPO:0000767
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"An increased chemical resistance phenotype observed in the vegetative growth phase of the life cycle in which cells grow in the presence of a higher concentration of staurosporine than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased resistance to chemical during vegetative growth","termid":"FYPO:0000126"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000139"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0002682"},{"rel_name":"is_a","termid":"FYPO:0000003"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0002682","FYPO:0005447","FYPO:0000003","FYPO:0001985","FYPO:0000139"],"is_obsolete":false,"name":"resistance to staurosporine","synonyms":[{"name":"resistance to staurosporine during mitotic cell cycle","type":"related"},{"name":"resistance to staurosporine during vegetative growth","type":"exact"},{"name":"resistant to staurosporine","type":"exact"}],"termid":"FYPO:0000767"}


id: GO:0097732
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A non-motile cilium where the axoneme has a ring of nine outer microtubule doublets plus two central microtubules (and is therefore called a 9+2 axoneme).","definition_xrefs":["PMID:21307074","PMID:22118931","GOC:cilia"],"direct_ancestors":[{"relation_name":"is_a","term_name":"non-motile cilium","termid":"GO:0097730"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"9+2 non-motile cilium","synonyms":[{"name":"9+2 immotile cilium","type":"related"},{"name":"non-motile 9+2 cilium","type":"exact"}],"termid":"GO:0097732"}


id: PBO:0005795
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nucleoside triphosphatase (predicted)","termid":"PBO:0005795"}


id: PBO:0026946
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-sensitive_to_sunitinib","termid":"PBO:0026946"}


id: SO:0001121
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A motif of two consecutive residues with dihedral angles: Residue(i): +20 degrees < phi < +140 degrees, -40 degrees < psi < +90 degrees. Residue(i+1): -140 degrees < phi < -20 degrees, -90 degrees < psi < +40 degrees.","definition_xrefs":["EBIBS:GAR"],"direct_ancestors":[{"relation_name":"is_a","term_name":"polypeptide_nest_motif","termid":"SO:0001120"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"SO:0000839"}],"interesting_parent_ids":["SO:0000839"],"is_obsolete":false,"name":"polypeptide_nest_left_right_motif","secondary_identifiers":["BS:00224"],"synonyms":[{"name":"nest_left_right","type":"exact"},{"name":"nest_lr","type":"exact"},{"name":"polypeptide nest left right motif","type":"exact"}],"termid":"SO:0001121"}


id: GO:1901870
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving ecgonone methyl ester.","definition_xrefs":["GOC:TermGenie","PMID:22665766"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular ketone metabolic process","termid":"GO:0042180"},{"relation_name":"is_a","term_name":"tropane alkaloid metabolic process","termid":"GO:0046448"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0044281","GO:0008150"],"is_obsolete":false,"name":"ecgonone methyl ester metabolic process","synonyms":[{"name":"ecgonone methyl ester metabolism","type":"exact"}],"termid":"GO:1901870"}


id: PBO:0086008
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein of unknown function; subunit of the leading edge protein (LEP) complex (Ssp1-Ady3-Don1-Irc10) that forms a ring-like structure at the leading edge of the prospore membrane during meiosis II; null mutant displays increased levels of spontaneous Rad52p foci","termid":"PBO:0086008"}


id: GO:0004990
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Combining with oxytocin to initiate a change in cell activity.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"G protein-coupled peptide receptor activity","termid":"GO:0008528"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0038023"}],"interesting_parent_ids":["GO:0038023","GO:0003674"],"is_obsolete":false,"name":"oxytocin receptor activity","termid":"GO:0004990"}


id: RO:0002597
data:
  {"annotation_feature_type":"gene","cv_name":"relationship","definition":"Holds between c and p if and only if c is capable of some activity a, and a negatively regulates p.","direct_ancestors":[{"relation_name":"is_a","term_name":"capable_of_regulating","termid":"RO:0002596"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"capable_of_negatively_regulating","termid":"RO:0002597"}


id: PBO:0003577
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transcription factor TFIIH complex subunit Tfb4","termid":"PBO:0003577"}


id: GO:0102797
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: geranial + O2 + H2O = H+ + geranate + hydrogen peroxide.","definition_xrefs":["GOC:pz"],"gene_count":0,"genotype_count":0,"name":"obsolete geranial:oxygen oxidoreductase activity (obsolete GO:0102797)","termid":"GO:0102797"}


id: GO:2001046
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of integrin-mediated signaling pathway.","definition_xrefs":["GOC:obol"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of signal transduction","termid":"GO:0009967"},{"relation_name":"is_a","term_name":"regulation of integrin-mediated signaling pathway","termid":"GO:2001044"},{"relation_name":"positively_regulates","term_name":"integrin-mediated signaling pathway","termid":"GO:0007229"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"positively_regulates","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"positive regulation of integrin-mediated signaling pathway","synonyms":[{"name":"positive regulation of integrin-mediated signalling pathway","type":"exact"}],"termid":"GO:2001046"}


id: GO:0071043
data:
  {"annotated_genes":["SJAG_04321","SJAG_02622","SJAG_03984","SJAG_01521","SJAG_03745"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[76492,74484],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0071034"},{"annotations":[113156,70348,70866],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0071039"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways involving cryptic unstable transcripts (CUTs), which are transcribed from intergenic regions. Many intergenic regions are heavily transcribed, but the transcripts are rarely detected due to rapid degradation by the nuclear exosome.","definition_xrefs":["PMID:16973436","GOC:krc","GOC:dgf","PMID:15935759"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ncRNA metabolic process","termid":"GO:0034660"}],"gene_count":5,"genes_by_uniquename":{"SJAG_01521":null,"SJAG_02622":null,"SJAG_03745":null,"SJAG_03984":null,"SJAG_04321":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"CUT metabolic process","references_by_uniquename":{"GO_REF:0000107":null,"PMID:21873635":null},"termid":"GO:0071043","terms_by_termid":{"GO:0071034":null,"GO:0071039":null}}


id: PBO:0031715
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_mitochondrial_transport","termid":"PBO:0031715"}


id: PBO:0083187
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Dubious open reading frame; unlikely to encode a functional protein, based on available experimental and comparative sequence data; completely overlaps the uncharacterized gene YFR011C; identified by expression profiling and mass spectrometry","termid":"PBO:0083187"}


id: PBO:0043887
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"corticotropin releasing hormone","termid":"PBO:0043887"}


id: PBO:0039048
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"advanced glycosylation end-product specific receptor","termid":"PBO:0039048"}


id: PR:Q7Z996
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- pop8 gene.","definition_xrefs":["UniProtKB:Q7Z996","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribonucleases P protein subunit pop8 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC1709.20","synonyms":[{"name":"Spom972h-pop8","type":"exact"}],"termid":"PR:Q7Z996"}


id: GO:0052664
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: nitroalkane + H2O + O2 = an aldehyde or ketone + nitrite + H2O2.","definition_xrefs":["EC:1.7.3.1"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on other nitrogenous compounds as donors, oxygen as acceptor","termid":"GO:0016663"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0016491","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"nitroalkane oxidase activity","secondary_identifiers":["KEGG_REACTION:R00799","MetaCyc:RXN-11045"],"synonyms":[{"name":"NAO activity","type":"related"},{"name":"nitroalkane reductase activity","type":"related"},{"name":"nitroalkane:oxygen oxidoreductase activity","type":"related"}],"termid":"GO:0052664"}


id: PBO:0057145
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 223","termid":"PBO:0057145"}


id: GO:0140368
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A receptor complex that recognizes, binds and sequesters a specific receptor ligand to prevent it from binding to its regular receptor. May be soluble or membrane bound.","definition_xrefs":["PMID:9168977","PMID:30621730","GOC:bhm"],"direct_ancestors":[{"relation_name":"is_a","term_name":"receptor complex","termid":"GO:0043235"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575","GO:0032991"],"is_obsolete":false,"name":"decoy receptor complex","synonyms":[{"name":"osteoclastogenesis inhibitory factor","type":"narrow"},{"name":"osteoprotegerin complex","type":"narrow"}],"termid":"GO:0140368"}


id: PBO:0087291
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Silenced copy of ALPHA2 at HML; homeobox-domain protein that associates with Mcm1p in haploid cells to repress a-specific gene expression and interacts with a1p in diploid cells to repress haploid-specific gene expression","termid":"PBO:0087291"}


id: PBO:0055993
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"limbic system associated membrane protein","termid":"PBO:0055993"}


id: PBO:0043610
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"COMM domain containing 3","termid":"PBO:0043610"}


id: GO:0002136
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which the carbonyl of cytosine at position 34 of a tRNA is post-transcriptionally replaced by lysine.","definition_xrefs":["PMID:15894617"],"direct_ancestors":[{"relation_name":"is_a","term_name":"tRNA wobble cytosine modification","termid":"GO:0002101"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006399"},{"rel_name":"part_of","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0006399","GO:0010467","GO:0008150"],"is_obsolete":false,"name":"tRNA wobble base lysidine biosynthesis","termid":"GO:0002136"}


id: FYPO:0001336
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell process phenotype that affects a transport process in the vegetative growth phase of the life cycle.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"transport phenotype","termid":"FYPO:0000149"},{"relation_name":"is_a","term_name":"localization phenotype during vegetative growth","termid":"FYPO:0001337"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001320","FYPO:0000138"],"is_obsolete":false,"name":"transport phenotype during vegetative growth","synonyms":[{"name":"fission yeast transport phenotype during vegetative growth","type":"exact"},{"name":"transport phenotype during mitotic cell cycle","type":"related"}],"termid":"FYPO:0001336"}


id: GO:0031886
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a type 1 member 3 taste receptor.","definition_xrefs":["GOC:nln","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"taste receptor binding","termid":"GO:0031883"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0005515"}],"interesting_parent_ids":["GO:0003674","GO:0005515","GO:0005488"],"is_obsolete":false,"name":"type 1 member 3 taste receptor binding","synonyms":[{"name":"sweet taste receptor binding","type":"exact"},{"name":"type 1 member 3 taste receptor ligand","type":"narrow"}],"termid":"GO:0031886"}


id: GO:0030041
data:
  {"annotated_genes":["SJAG_02245","SJAG_03086","SJAG_00677","SJAG_04479","SJAG_04100","SJAG_00521","SJAG_01268","SJAG_04982","SJAG_01894","SJAG_01993","SJAG_02700","SJAG_00279"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[65085,89423,94339],"is_not":false,"summary":null,"term":"GO:0030041"},{"annotations":[75029,77965,87941,78657],"is_not":false,"rel_names":["regulates","negatively_regulates"],"summary":null,"term":"GO:0051016"},{"annotations":[78201,86356,76280,100526],"is_not":false,"rel_names":["regulates"],"summary":null,"term":"GO:0030833"},{"annotations":[75033,72055],"is_not":false,"rel_names":["regulates","negatively_regulates"],"summary":null,"term":"GO:0042989"}]},"cv_name":"biological_process","definition":"Assembly of actin filaments by the addition of actin monomers to a filament.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"actin polymerization or depolymerization","termid":"GO:0008154"},{"relation_name":"is_a","term_name":"protein polymerization","termid":"GO:0051258"}],"gene_count":12,"genes_by_uniquename":{"SJAG_00279":null,"SJAG_00521":null,"SJAG_00677":null,"SJAG_01268":null,"SJAG_01894":null,"SJAG_01993":null,"SJAG_02245":null,"SJAG_02700":null,"SJAG_03086":null,"SJAG_04100":null,"SJAG_04479":null,"SJAG_04982":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0007010"},{"rel_name":"part_of","termid":"GO:0030036"},{"rel_name":"is_a","termid":"GO:0065003"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0044085"}],"interesting_parent_ids":["GO:0030036","GO:0008150","GO:0007010","GO:0044085","GO:0065003"],"is_obsolete":false,"name":"actin filament polymerization","references_by_uniquename":{"GO_REF:0000104":null,"GO_REF:0000107":null,"PMID:21873635":null},"synonyms":[{"name":"actin polymerization","type":"exact"},{"name":"actin polymerizing activity","type":"related"}],"termid":"GO:0030041","terms_by_termid":{"GO:0030041":null,"GO:0030833":null,"GO:0042989":null,"GO:0051016":null}}


id: PR:Q10227
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPAC2E12.03c gene.","definition_xrefs":["UniProtKB:Q10227","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized protein C2E12.03c (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC2E12.03c","synonyms":[{"name":"Spom972h-SPAC2E12.03c","type":"exact"}],"termid":"PR:Q10227"}


id: PBO:0039909
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Cdc42 guanine nucleotide exchange factor 9","termid":"PBO:0039909"}


id: GO:0003136
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any canonical Wnt signaling that decreases the rate, frequency or extent of heart induction.","definition_xrefs":["GOC:mtg_heart","PMID:19862329"],"gene_count":0,"genotype_count":0,"name":"obsolete negative regulation of heart induction by canonical Wnt signaling pathway (obsolete GO:0003136)","synonyms":[{"name":"negative regulation of cardioblast cell fate specification by Wnt receptor signaling pathway","type":"exact"},{"name":"negative regulation of heart induction by canonical Wnt receptor signaling pathway","type":"exact"},{"name":"negative regulation of heart induction by canonical Wnt receptor signalling pathway","type":"exact"},{"name":"negative regulation of heart induction by canonical Wnt-activated signaling pathway","type":"exact"}],"termid":"GO:0003136"}


id: PBO:0041668
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"calcyclin binding protein pseudogene 1","termid":"PBO:0041668"}


id: PBO:0080073
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ubiquitin specific peptidase 37","termid":"PBO:0080073"}


id: PBO:0028403
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_ubiquinone_binding","termid":"PBO:0028403"}


id: PBO:0051994
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"junctional adhesion molecule 2","termid":"PBO:0051994"}


id: PBO:0028892
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_protein_localization_to_chromatin_during_vegetative_growth","termid":"PBO:0028892"}


id: PBO:0077621
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"thymosin beta 10 pseudogene 2","termid":"PBO:0077621"}


id: SO:1000039
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A tandem duplication where the individual regions are in the same orientation.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"tandem_duplication","termid":"SO:1000173"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"direct_tandem_duplication","synonyms":[{"name":"direct tandem duplication","type":"exact"}],"termid":"SO:1000039"}


id: GO:0071628
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"OBSOLETE. The component of a fungal-type vacuole membrane consisting of the gene products and protein complexes having either part of their peptide sequence embedded in the hydrophobic region of the membrane or some other covalently attached group such as a GPI anchor that is similarly embedded in the membrane.","definition_xrefs":["GOC:dos","GOC:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete intrinsic component of fungal-type vacuolar membrane (obsolete GO:0071628)","termid":"GO:0071628"}


id: PBO:0017571
data:
  {"annotation_feature_type":"gene","cv_name":"EC numbers","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"3.1.3.96","termid":"PBO:0017571"}


id: GO:0032489
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of Cdc42 protein signal transduction.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of Rho protein signal transduction","termid":"GO:0035023"},{"relation_name":"regulates","term_name":"Cdc42 protein signal transduction","termid":"GO:0032488"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"regulation of Cdc42 protein signal transduction","termid":"GO:0032489"}


id: GO:0018428
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The incorporation of copper into a copper-sulfur cluster.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"copper incorporation into metallo-sulfur cluster","termid":"GO:0018427"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0044085"}],"interesting_parent_ids":["GO:0008150","GO:0044085"],"is_obsolete":false,"name":"copper incorporation into copper-sulfur cluster","synonyms":[{"name":"copper incorporation into copper-sulphur cluster","type":"exact"}],"termid":"GO:0018428"}


id: PBO:0059068
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"myelin associated oligodendrocyte basic protein","termid":"PBO:0059068"}


id: GO:0015917
data:
  {"annotated_genes":["SJAG_00669"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[69046],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0140331"}]},"cv_name":"biological_process","definition":"The directed movement of aminophospholipids into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Aminophospholipids contain phosphoric acid as a mono- or diester and an amino (NH2) group.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phospholipid transport","termid":"GO:0015914"},{"relation_name":"is_a","term_name":"nitrogen compound transport","termid":"GO:0071705"}],"gene_count":1,"genes_by_uniquename":{"SJAG_00669":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006810","GO:0008150","GO:0051179"],"is_obsolete":false,"name":"aminophospholipid transport","references_by_uniquename":{"GO_REF:0000108":null},"termid":"GO:0015917","terms_by_termid":{"GO:0140331":null}}


id: PBO:0078107
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"trafficking protein particle complex 13 pseudogene 1","termid":"PBO:0078107"}


id: FYPO:0001670
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which occurrence of GDP binding by a gene product (usually a protein) in a mutant is abnormal. The affected gene product may be encoded by the mutated gene, or by a different gene.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal molecular function","termid":"FYPO:0000707"},{"relation_name":"is_a","term_name":"binding phenotype","termid":"FYPO:0001092"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0000707"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0000652","FYPO:0000707","FYPO:0001985"],"is_obsolete":false,"name":"abnormal GDP binding","termid":"FYPO:0001670"}


id: SO:1000110
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A mutation that reverts the sequence of a previous frameshift mutation back to the initial frame.","definition_xrefs":["SO:ke"],"gene_count":0,"genotype_count":0,"name":"OBSOLETE SO:1000110 frame_restoring_sequence_variant (obsolete SO:1000110)","synonyms":[{"name":"frame restoring mutation","type":"exact"},{"name":"frame restoring sequence variant","type":"exact"}],"termid":"SO:1000110"}


id: PBO:0087712
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Subunit of the RNA polymerase II mediator complex; associates with core polymerase subunits to form the RNA polymerase II holoenzyme; essential for transcriptional regulation; required for proper termination of transcription for some genes; involved in telomere maintenance","termid":"PBO:0087712"}


id: PR:Q10092
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- hsp3104 gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q10092"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glutathione-independent glyoxalase hsp3104 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC11D3.13","synonyms":[{"name":"Spom972h-hsp3104","type":"exact"},{"name":"glyoxalase 3 homolog 4 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"heat shock protein 31 homolog 4 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:Q10092"}


id: PR:Q9USG6
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- rpl35a gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q9USG6"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"60S ribosomal protein L33-B (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCP31B10.08c","synonyms":[{"name":"L37B (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-rpl35a","type":"exact"}],"termid":"PR:Q9USG6"}


id: PBO:0085611
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein involved in DNA mismatch repair and meiotic recombination; involved in crossing-over during meiotic recombination; forms a complex with Mlh1p; mammalian homolog is implicated mammalian microsatellite instability","termid":"PBO:0085611"}


id: GO:1990258
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The modification of a histone by addition of a methyl group to an glutamine residue.","definition_xrefs":["PMID:24352239"],"gene_count":0,"genotype_count":0,"name":"obsolete histone glutamine methylation (obsolete GO:1990258)","termid":"GO:1990258"}


id: PBO:0062384
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 7 subfamily E member 2 pseudogene","termid":"PBO:0062384"}


id: PR:O42972
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPBC20F10.02c gene.","definition_xrefs":["UniProtKB:O42972","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"UPF0588 membrane protein C20F10.02c (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC20F10.02c","synonyms":[{"name":"Spom972h-SPBC20F10.02c","type":"exact"}],"termid":"PR:O42972"}


id: GO:0021637
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process that contributes to the act of creating the structural organization of the oculomotor nerve. This process pertains to the physical shaping of a rudimentary structure. The trigeminal nerve is composed of three large branches. They are the ophthalmic (V1, sensory), maxillary (V2, sensory) and mandibular (V3, motor and sensory) branches. The sensory ophthalmic branch travels through the superior orbital fissure and passes through the orbit to reach the skin of the forehead and top of the head. The maxillary nerve contains sensory branches that reach the pterygopalatine fossa via the inferior orbital fissure (face, cheek and upper teeth) and pterygopalatine canal (soft and hard palate, nasal cavity and pharynx). The motor part of the mandibular branch is distributed to the muscles of mastication, the mylohyoid muscle and the anterior belly of the digastric. The mandibular nerve also innervates the tensor veli palatini and tensor tympani muscles. The sensory part of the mandibular nerve is composed of branches that carry general sensory information from the mucous membranes of the mouth and cheek, anterior two-thirds of the tongue, lower teeth, skin of the lower jaw, side of the head and scalp and meninges of the anterior and middle cranial fossae.","definition_xrefs":["GOC:dgh","GOC:dph","GO_REF:0000021","GOC:cls","GOC:jid","ISBN:0838580343"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cranial nerve structural organization","termid":"GO:0021604"},{"relation_name":"part_of","term_name":"trigeminal nerve morphogenesis","termid":"GO:0021636"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"trigeminal nerve structural organization","synonyms":[{"name":"CN V structural organization","type":"related"},{"name":"trigeminal nerve structural organisation","type":"exact"}],"termid":"GO:0021637"}


id: PATO:0001168
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A structural quality inhering in a bearer by virtue of not being harmed or injured or spoiled.","definition_xrefs":["WordNet:WordNet"],"direct_ancestors":[{"relation_name":"is_a","term_name":"damage","termid":"PATO:0001020"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"undamaged","termid":"PATO:0001168"}


id: PBO:0073739
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"solute carrier family 1 member 6","termid":"PBO:0073739"}


id: GO:1905404
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of activated CD8-positive, alpha-beta T cell apoptotic process.","definition_xrefs":["GO_REF:0000058","GOC:TermGenie","PMID:24187568"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of T cell apoptotic process","termid":"GO:0070234"},{"relation_name":"is_a","term_name":"regulation of activated CD8-positive, alpha-beta T cell apoptotic process","termid":"GO:1905402"},{"relation_name":"positively_regulates","term_name":"activated CD8-positive, alpha-beta T cell apoptotic process","termid":"GO:1905397"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of activated CD8-positive, alpha-beta T cell apoptotic process","synonyms":[{"name":"activation of activated CD8-positive, alpha-beta T cell apoptosis","type":"narrow"},{"name":"activation of activated CD8-positive, alpha-beta T cell apoptotic process","type":"narrow"},{"name":"activation of activated CD8-positive, alpha-beta T lymphocyte apoptosis","type":"narrow"},{"name":"activation of activated CD8-positive, alpha-beta T lymphocyte apoptotic process","type":"narrow"},{"name":"activation of activated CD8-positive, alpha-beta T-cell apoptosis","type":"narrow"},{"name":"activation of activated CD8-positive, alpha-beta T-cell apoptotic process","type":"narrow"},{"name":"activation of activated CD8-positive, alpha-beta T-lymphocyte apoptosis","type":"narrow"},{"name":"activation of activated CD8-positive, alpha-beta T-lymphocyte apoptotic process","type":"narrow"},{"name":"positive regulation of activated CD8-positive, alpha-beta T cell apoptosis","type":"narrow"},{"name":"positive regulation of activated CD8-positive, alpha-beta T lymphocyte apoptosis","type":"narrow"},{"name":"positive regulation of activated CD8-positive, alpha-beta T lymphocyte apoptotic process","type":"exact"},{"name":"positive regulation of activated CD8-positive, alpha-beta T-cell apoptosis","type":"narrow"},{"name":"positive regulation of activated CD8-positive, alpha-beta T-cell apoptotic process","type":"exact"},{"name":"positive regulation of activated CD8-positive, alpha-beta T-lymphocyte apoptosis","type":"narrow"},{"name":"positive regulation of activated CD8-positive, alpha-beta T-lymphocyte apoptotic process","type":"exact"},{"name":"up regulation of activated CD8-positive, alpha-beta T cell apoptosis","type":"narrow"},{"name":"up regulation of activated CD8-positive, alpha-beta T cell apoptotic process","type":"exact"},{"name":"up regulation of activated CD8-positive, alpha-beta T lymphocyte apoptosis","type":"narrow"},{"name":"up regulation of activated CD8-positive, alpha-beta T lymphocyte apoptotic process","type":"exact"},{"name":"up regulation of activated CD8-positive, alpha-beta T-cell apoptosis","type":"narrow"},{"name":"up regulation of activated CD8-positive, alpha-beta T-cell apoptotic process","type":"exact"},{"name":"up regulation of activated CD8-positive, alpha-beta T-lymphocyte apoptosis","type":"narrow"},{"name":"up regulation of activated CD8-positive, alpha-beta T-lymphocyte apoptotic process","type":"exact"},{"name":"up-regulation of activated CD8-positive, alpha-beta T cell apoptosis","type":"narrow"},{"name":"up-regulation of activated CD8-positive, alpha-beta T cell apoptotic process","type":"exact"},{"name":"up-regulation of activated CD8-positive, alpha-beta T lymphocyte apoptosis","type":"narrow"},{"name":"up-regulation of activated CD8-positive, alpha-beta T lymphocyte apoptotic process","type":"exact"},{"name":"up-regulation of activated CD8-positive, alpha-beta T-cell apoptosis","type":"narrow"},{"name":"up-regulation of activated CD8-positive, alpha-beta T-cell apoptotic process","type":"exact"},{"name":"up-regulation of activated CD8-positive, alpha-beta T-lymphocyte apoptosis","type":"narrow"},{"name":"up-regulation of activated CD8-positive, alpha-beta T-lymphocyte apoptotic process","type":"exact"},{"name":"upregulation of activated CD8-positive, alpha-beta T cell apoptosis","type":"narrow"},{"name":"upregulation of activated CD8-positive, alpha-beta T cell apoptotic process","type":"exact"},{"name":"upregulation of activated CD8-positive, alpha-beta T lymphocyte apoptosis","type":"narrow"},{"name":"upregulation of activated CD8-positive, alpha-beta T lymphocyte apoptotic process","type":"exact"},{"name":"upregulation of activated CD8-positive, alpha-beta T-cell apoptosis","type":"narrow"},{"name":"upregulation of activated CD8-positive, alpha-beta T-cell apoptotic process","type":"exact"},{"name":"upregulation of activated CD8-positive, alpha-beta T-lymphocyte apoptosis","type":"narrow"},{"name":"upregulation of activated CD8-positive, alpha-beta T-lymphocyte apoptotic process","type":"exact"}],"termid":"GO:1905404"}


id: GO:0005631
data:
  {"annotated_genes":["SJAG_03013"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[87396],"is_not":false,"summary":null,"term":"GO:0005631"}]},"cv_name":"cellular_component","definition":"The second outermost layer of the spore wall, as described in Saccharomyces.","definition_xrefs":["ISBN:0879693568"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular anatomical entity","termid":"GO:0110165"},{"relation_name":"part_of","term_name":"ascospore wall","termid":"GO:0005619"}],"gene_count":1,"genes_by_uniquename":{"SJAG_03013":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005618"}],"interesting_parent_ids":["GO:0005575","GO:0005618"],"is_obsolete":false,"name":"chitosan layer of spore wall","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0005631","terms_by_termid":{"GO:0005631":null}}


id: GO:0030004
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process involved in the maintenance of an internal steady state of monovalent inorganic cations at the level of a cell.","definition_xrefs":["GOC:mah","GOC:ai"],"gene_count":0,"genotype_count":0,"name":"obsolete cellular monovalent inorganic cation homeostasis (obsolete GO:0030004)","termid":"GO:0030004"}


id: PBO:0090017
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"serine/threonine protein kinase Ppk22","termid":"PBO:0090017"}


id: GO:0031210
data:
  {"annotated_genes":["SJAG_00946"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[70171],"is_not":false,"summary":null,"term":"GO:0031210"}]},"cv_name":"molecular_function","definition":"Binding to a phosphatidylcholine, a glycophospholipid in which a phosphatidyl group is esterified to the hydroxyl group of choline.","definition_xrefs":["ISBN:0198506732","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phospholipid binding","termid":"GO:0005543"},{"relation_name":"is_a","term_name":"cation binding","termid":"GO:0043169"},{"relation_name":"is_a","term_name":"quaternary ammonium group binding","termid":"GO:0050997"}],"gene_count":1,"genes_by_uniquename":{"SJAG_00946":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008289"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005488"}],"interesting_parent_ids":["GO:0005488","GO:0003674","GO:0008289"],"is_obsolete":false,"name":"phosphatidylcholine binding","references_by_uniquename":{"PMID:21873635":null},"termid":"GO:0031210","terms_by_termid":{"GO:0031210":null}}


id: PBO:0012214
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-regulates_level_of","termid":"PBO:0012214"}


id: GO:2000204
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of ribosomal large subunit export from nucleus.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of ribosomal subunit export from nucleus","termid":"GO:2000201"},{"relation_name":"is_a","term_name":"regulation of ribosomal large subunit export from nucleus","termid":"GO:2000203"},{"relation_name":"negatively_regulates","term_name":"ribosomal large subunit export from nucleus","termid":"GO:0000055"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"negatively_regulates","termid":"GO:0006810"},{"rel_name":"regulates","termid":"GO:0006913"},{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"negatively_regulates","termid":"GO:0006913"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"negatively_regulates","termid":"GO:0044085"},{"rel_name":"regulates","termid":"GO:0042254"},{"rel_name":"negatively_regulates","termid":"GO:0042254"},{"rel_name":"regulates","termid":"GO:0044085"}],"interesting_parent_ids":["GO:0006810","GO:0042254","GO:0008150","GO:0044085","GO:0006913"],"is_obsolete":false,"name":"negative regulation of ribosomal large subunit export from nucleus","synonyms":[{"name":"negative regulation of 50S ribosomal subunit export from nucleus","type":"related"},{"name":"negative regulation of 60S ribosomal subunit export from nucleus","type":"related"},{"name":"negative regulation of ribosomal large subunit export from cell nucleus","type":"exact"},{"name":"negative regulation of ribosomal large subunit export out of nucleus","type":"exact"},{"name":"negative regulation of ribosomal large subunit transport from nucleus to cytoplasm","type":"exact"},{"name":"negative regulation of ribosomal large subunit-nucleus export","type":"exact"}],"termid":"GO:2000204"}


id: SO:0002107
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A unprocessed pseudogene supported by locus-specific evidence of transcription.","definition_xrefs":["GENCODE:http://www.gencodegenes.org/gencode_biotypes.html"],"direct_ancestors":[{"relation_name":"is_a","term_name":"non_processed_pseudogene","termid":"SO:0001760"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transcribed_unprocessed_pseudogene","synonyms":[{"name":"transcribed unprocessed pseudogene","type":"exact"},{"name":"transcribed_non_processed_pseudogene","type":"exact"}],"termid":"SO:0002107"}


id: PBO:0055109
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2527","termid":"PBO:0055109"}


id: FYPO:0000400
data:
  {"alleles_by_uniquename":{"SJAG_04332:allele-1":{"allele_type":"amino_acid_mutation","description":"I30T,T572P","gene_uniquename":"SJAG_04332","name":"cdc25-D9","uniquename":"SJAG_04332:allele-1"}},"annotation_feature_type":"genotype","cv_annotations":{"single_locus_phenotype":[{"annotations":[114566],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0007701"}]},"cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which progression through the mitotic cell cycle is arrested at the G2/M transition, under conditions where arrest is not a normal occurrence.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell cycle arrest at mitotic G2/M phase transition","termid":"FYPO:0000446"},{"relation_name":"is_a","term_name":"abnormal cell cycle arrest in mitotic interphase","termid":"FYPO:0001028"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04332":null},"genotype_count":1,"genotypes_by_uniquename":{"cdc25-D9-I30T,T572P-amino_acid_mutation-expression-not_assayed_or_wild_type":{"display_name":"cdc25-D9(I30T,T572P aa)","display_uniquename":"cdc25-D9-I30T,T572P-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04332:allele-1","expression":"Not assayed or wild type"}]}]}},"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000631","FYPO:0005447","FYPO:0000002"],"is_obsolete":false,"name":"abnormal cell cycle arrest at mitotic G2/M phase transition","references_by_uniquename":{"PMID:25866389":null},"secondary_identifiers":["FYPO:0003373"],"single_locus_annotated_genes":["SJAG_04332"],"single_locus_genotype_uniquenames":["cdc25-D9-I30T,T572P-amino_acid_mutation-expression-not_assayed_or_wild_type"],"synonyms":[{"name":"abnormal cell cycle arrest at mitotic G2/M phase transition during mitotic cell cycle","type":"exact"},{"name":"abnormal cell cycle arrest at mitotic G2/M phase transition during vegetative growth","type":"exact"},{"name":"abnormal mitotic G2/M phase arrest","type":"exact"},{"name":"abnormal mitotic cell cycle arrest at G2/M phase transition","type":"exact"},{"name":"abolished mitotic G2/M phase transition","type":"related"},{"name":"cell cycle progression through the G2/M phase transition: arrested","type":"related"}],"termid":"FYPO:0000400","terms_by_termid":{"FYECO:0000004":null,"FYECO:0000137":null,"FYPO:0007701":null,"FYPO_EXT:0000001":null}}


id: PBO:0041040
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"BRCA1 pseudogene 1","termid":"PBO:0041040"}


id: PBO:0109838
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NuA4 histone acetyltransferase core complex-Piccolo HAT module linker protein Epl1","termid":"PBO:0109838"}


id: GO:0031536
data:
  {"annotated_genes":["SJAG_03048","SJAG_00082","SJAG_03126","SJAG_01801"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[85697,89347,97801,107192],"is_not":false,"summary":null,"term":"GO:0031536"}]},"cv_name":"biological_process","definition":"Any process that activates or increases the rate of progression from anaphase/telophase (high mitotic CDK activity) to G1 (low mitotic CDK activity).","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of exit from mitosis","termid":"GO:0007096"},{"relation_name":"is_a","term_name":"positive regulation of mitotic cell cycle phase transition","termid":"GO:1901992"},{"relation_name":"positively_regulates","term_name":"exit from mitosis","termid":"GO:0010458"}],"gene_count":4,"genes_by_uniquename":{"SJAG_00082":null,"SJAG_01801":null,"SJAG_03048":null,"SJAG_03126":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0044772"},{"rel_name":"positively_regulates","termid":"GO:0044772"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0007049"},{"rel_name":"positively_regulates","termid":"GO:0007049"}],"interesting_parent_ids":["GO:0044772","GO:0008150","GO:0007049"],"is_obsolete":false,"name":"positive regulation of exit from mitosis","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"activation of exit from mitosis","type":"narrow"},{"name":"stimulation of exit from mitosis","type":"narrow"},{"name":"up regulation of exit from mitosis","type":"exact"},{"name":"up-regulation of exit from mitosis","type":"exact"},{"name":"upregulation of exit from mitosis","type":"exact"}],"termid":"GO:0031536","terms_by_termid":{"GO:0031536":null}}


id: GO:0060998
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the rate, frequency, or extent of dendritic spine development, the process whose specific outcome is the progression of the dendritic spine over time, from its formation to the mature structure.","definition_xrefs":["GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of developmental process","termid":"GO:0050793"},{"relation_name":"regulates","term_name":"dendritic spine development","termid":"GO:0060996"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of dendritic spine development","termid":"GO:0060998"}


id: GO:0100035
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any transcription from RNA polymerase II promoter process that negatively regulates transmembrane transport.","definition_xrefs":["GOC:obol","GOC:cjm"],"gene_count":0,"genotype_count":0,"name":"obsolete negative regulation of transmembrane transport by transcription from RNA polymerase II promoter (obsolete GO:0100035)","termid":"GO:0100035"}


id: PBO:0069022
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 267, pseudogene","termid":"PBO:0069022"}


id: PBO:0042776
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"centrosomal protein 85 like","termid":"PBO:0042776"}


id: SO:0002081
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A sequence variant that intersects the coding regions of an incompletely annotated transcript.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"incomplete_transcript_variant","termid":"SO:0002075"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"incomplete_transcript_CDS","secondary_identifiers":["http://snp.gs.washington.edu/SeattleSeqAnnotation137/HelpHowToUse.jsp"],"synonyms":[{"name":"Seattleseq:coding-notMod3","type":"exact"},{"name":"Seattleseq:coding-unknown","type":"exact"}],"termid":"SO:0002081"}


id: PBO:0042424
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cell division cycle 27 pseudogene 8","termid":"PBO:0042424"}


id: PBO:0075043
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nucleolar RNA, C/D box 116-6","termid":"PBO:0075043"}


id: PBO:0075573
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SPIN2 family pseudogene 1","termid":"PBO:0075573"}


id: PBO:0051539
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"interleukin 6","termid":"PBO:0051539"}


id: GO:0050119
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: N-acetyl-D-glucosamine + H2O = D-glucosamine + acetate.","definition_xrefs":["EC:3.5.1.33","RHEA:20593"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides","termid":"GO:0016811"},{"relation_name":"is_a","term_name":"deacetylase activity","termid":"GO:0019213"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0019213"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0016810"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0019213","GO:0016787","GO:0003674","GO:0003824","GO:0016810"],"is_obsolete":false,"name":"N-acetylglucosamine deacetylase activity","secondary_identifiers":["MetaCyc:N-ACETYLGLUCOSAMINE-DEACETYLASE-RXN","KEGG_REACTION:R01200","Reactome:R-HSA-2022887"],"synonyms":[{"name":"N-acetyl-D-glucosamine amidohydrolase activity","type":"related"},{"name":"N-acetyl-D-glucosaminyl N-deacetylase activity","type":"related"},{"name":"acetylaminodeoxyglucose acetylhydrolase activity","type":"related"}],"termid":"GO:0050119"}


id: PBO:0083725
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Essential 113 kDa subunit of the exocyst complex; the exocyst mediates polarized targeting and tethering of post-Golgi secretory vesicles to active sites of exocytosis prior to SNARE-mediated fusion; interacts with and functions as a downstream effector of active, GTP-bound Sec4p, a Rab family GTPase","termid":"PBO:0083725"}


id: PBO:0057828
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 3147","termid":"PBO:0057828"}


id: PBO:0047005
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"family with sequence similarity 90 member A8","termid":"PBO:0047005"}


id: PBO:0062460
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 7 subfamily E member 145 pseudogene","termid":"PBO:0062460"}


id: GO:0097616
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process in which an organism activates, maintains or increases the frequency, rate or extent of the type IV pilus-dependent motility of a symbiont organism (i.e. the controlled movement of a bacterial cell which is dependent on the presence of type IV pili, and which includes social gliding motility and twitching motility). The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction.","definition_xrefs":["GOC:als","PMID:12037568"],"direct_ancestors":[{"relation_name":"is_a","term_name":"modulation by host of symbiont type IV pilus-dependent motility","termid":"GO:0097615"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation by host of symbiont type IV pilus-dependent motility","synonyms":[{"name":"positive regulation by host of bacterial type IV pilus-dependent motility","type":"exact"}],"termid":"GO:0097616"}


id: PR:O59832
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPCC965.12 gene.","definition_xrefs":["UniProtKB:O59832","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized dipeptidase C965.12 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC965.12","synonyms":[{"name":"Spom972h-SPCC965.12","type":"exact"}],"termid":"PR:O59832"}


id: GO:1905135
data:
  {"annotated_genes":["SJAG_02779"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[87685],"is_not":false,"summary":null,"term":"GO:1905135"}]},"cv_name":"biological_process","definition":"The directed movement of biotin from outside of a cell, across the plasma membrane and into the cytosol.","definition_xrefs":["GO_REF:0000075","PMID:12557275","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"biotin transport","termid":"GO:0015878"},{"relation_name":"is_a","term_name":"vitamin transmembrane transport","termid":"GO:0035461"},{"relation_name":"is_a","term_name":"import across plasma membrane","termid":"GO:0098739"},{"relation_name":"is_a","term_name":"carboxylic acid transmembrane transport","termid":"GO:1905039"}],"gene_count":1,"genes_by_uniquename":{"SJAG_02779":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0055085"},{"rel_name":"is_a","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0006810","GO:0008150","GO:0055085","GO:0051179"],"is_obsolete":false,"name":"biotin import across plasma membrane","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["GO:1901689","GO:0044756"],"synonyms":[{"name":"biotin import","type":"related"},{"name":"biotin import into cell","type":"exact"}],"termid":"GO:1905135","terms_by_termid":{"GO:1905135":null}}


id: PBO:0075744
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"signal recognition particle 68 pseudogene 3","termid":"PBO:0075744"}


id: PR:O13969
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPAC24C9.09 gene.","definition_xrefs":["PRO:DNx","UniProtKB:O13969"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"threonine--tRNA ligase, mitochondrial (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC24C9.09","synonyms":[{"name":"Spom972h-SPAC24C9.09","type":"exact"},{"name":"ThrRS (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"threonyl-tRNA synthetase (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:O13969"}


id: SO:0002259
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A region defined by a cluster of experimentally determined polyadenylation sites, typically less than 25 bp in length and associated with a single polyadenylation signal.","definition_xrefs":["PMID:17202160","PMID:25906188","PMID:24072873"],"direct_ancestors":[{"relation_name":"has_part","term_name":"polyA_site","termid":"SO:0000553"},{"relation_name":"is_a","term_name":"biological_region","termid":"SO:0001411"},{"relation_name":"part_of","term_name":"three_prime_UTR","termid":"SO:0000205"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"polyA_site_cluster","synonyms":[{"name":"polyA cluster","type":"exact"},{"name":"polyA site cluster","type":"exact"},{"name":"polyA_cluster","type":"exact"}],"termid":"SO:0002259"}


id: GO:0102515
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: pelargonidin 3-O-beta-D-glucoside + 1-O-feruloyl-beta-D-glucose = pelargonidin 3,7-di-O-beta-D-glucoside + ferulate + H+.","definition_xrefs":["EC:2.4.1.300","GOC:pz"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hexosyltransferase activity","termid":"GO:0016758"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016757"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0016740","GO:0016757","GO:0003824"],"is_obsolete":false,"name":"pelargonidin 3-O-glucoside 7-O-glucosyltransferase (feruloyl-glucose dependent) activity","secondary_identifiers":["MetaCyc:RXN-14447"],"termid":"GO:0102515"}


id: PBO:0025422
data:
  {"annotation_feature_type":"gene","cv_name":"disease_associated","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"amino acid metabolism disorders","termid":"PBO:0025422"}


id: PBO:0053700
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 901","termid":"PBO:0053700"}


id: GO:0061620
data:
  {"annotated_genes":["SJAG_00461","SJAG_02135","SJAG_00605","SJAG_01310","SJAG_06622","SJAG_04192","SJAG_02369","SJAG_02796","SJAG_03660","SJAG_00027","SJAG_02945","SJAG_03828","SJAG_04495","SJAG_06621","SJAG_04334","SJAG_02107","SJAG_00839","SJAG_03373","SJAG_02009","SJAG_03903"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[90109,76796,101181,100815,104685,98784,101180,104683,104689,93516,93781,99045,90579,100814,104686,104687,100816,104688,104684,111476],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0061621"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of a carbohydrate into pyruvate, occurring through a glucose-6-phosphate intermediate, with the concomitant production of a small amount of ATP.","definition_xrefs":["ISBN:0201090910","ISBN:0879010479","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"glycolytic process through fructose-6-phosphate","termid":"GO:0061615"}],"gene_count":20,"genes_by_uniquename":{"SJAG_00027":null,"SJAG_00461":null,"SJAG_00605":null,"SJAG_00839":null,"SJAG_01310":null,"SJAG_02009":null,"SJAG_02107":null,"SJAG_02135":null,"SJAG_02369":null,"SJAG_02796":null,"SJAG_02945":null,"SJAG_03373":null,"SJAG_03660":null,"SJAG_03828":null,"SJAG_03903":null,"SJAG_04192":null,"SJAG_04334":null,"SJAG_04495":null,"SJAG_06621":null,"SJAG_06622":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0044248"},{"rel_name":"is_a","termid":"GO:0006091"},{"rel_name":"is_a","termid":"GO:0005975"},{"rel_name":"is_a","termid":"GO:0055086"}],"interesting_parent_ids":["GO:0055086","GO:0008150","GO:0044281","GO:0005975","GO:0044248","GO:0006091"],"is_obsolete":false,"name":"glycolytic process through glucose-6-phosphate","references_by_uniquename":{"GO_REF:0000107":null,"PMID:21873635":null},"termid":"GO:0061620","terms_by_termid":{"GO:0061621":null}}


id: PBO:0040784
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"brain expressed X-linked 1","termid":"PBO:0040784"}


id: GO:1904730
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of intestinal lipid absorption.","definition_xrefs":["PMID:18768481","GO_REF:0000058","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of intestinal absorption","termid":"GO:1904479"},{"relation_name":"is_a","term_name":"regulation of intestinal lipid absorption","termid":"GO:1904729"},{"relation_name":"negatively_regulates","term_name":"intestinal lipid absorption","termid":"GO:0098856"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of intestinal lipid absorption","synonyms":[{"name":"down regulation of intestinal lipid absorption","type":"exact"},{"name":"down-regulation of intestinal lipid absorption","type":"exact"},{"name":"downregulation of intestinal lipid absorption","type":"exact"},{"name":"inhibition of intestinal lipid absorption","type":"narrow"}],"termid":"GO:1904730"}


id: GO:0042990
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that modulates the frequency, rate or extent of the movement of a transcription factor from the cytoplasm to the nucleus.","definition_xrefs":["GOC:jl"],"gene_count":0,"genotype_count":0,"name":"obsolete regulation of transcription factor import into nucleus (obsolete GO:0042990)","synonyms":[{"name":"regulation of transcription factor import into cell nucleus","type":"exact"},{"name":"regulation of transcription factor transport from cytoplasm to nucleus","type":"exact"},{"name":"regulation of transcription factor-nucleus import","type":"exact"}],"termid":"GO:0042990"}


id: MOD:01218
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"modification from Unimod Isotopic label -","definition_xrefs":["PubMed:15283597","Unimod:285#E"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Sulfanilic Acid (SA), light C12","termid":"MOD:00605"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Sulfanilic Acid (SA), light C12 - site E","synonyms":[{"name":"Light Sulfanilic Acid (SA) C12","type":"related"},{"name":"SulfanilicAcid","type":"related"}],"termid":"MOD:01218"}


id: PBO:0065178
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protein only RNase P catalytic subunit","termid":"PBO:0065178"}


id: GO:0150195
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The directed movement of substances (e.g. macromolecules, small molecules, ions) through the blood-cerebrospinal fluid barrier.","definition_xrefs":["PMID:21349151","GOC:aruk","GOC:bc"],"direct_ancestors":[{"relation_name":"is_a","term_name":"vascular transport","termid":"GO:0010232"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0006810","GO:0051179","GO:0008150"],"is_obsolete":false,"name":"transport across blood-cerebrospinal fluid barrier","synonyms":[{"name":"transport across BCSFB","type":"exact"},{"name":"transport across blood-CSF barrier","type":"exact"},{"name":"transport across blood/CSF barrier","type":"exact"},{"name":"transport across blood/cerebrospinal fluid barrier","type":"exact"}],"termid":"GO:0150195"}


id: PBO:0052929
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"keratin associated protein 20-1","termid":"PBO:0052929"}


id: GO:0051437
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that activates, maintains or increases the rate of ubiquitin ligase activity that contributes to the regulation of the mitotic cell cycle phase transition.","definition_xrefs":["GOC:ai","GOC:tb"],"gene_count":0,"genotype_count":0,"name":"obsolete positive regulation of ubiquitin-protein ligase activity involved in regulation of mitotic cell cycle transition (obsolete GO:0051437)","synonyms":[{"name":"activation of ubiquitin ligase activity during mitotic cell cycle","type":"narrow"},{"name":"mitotic SCF complex activator","type":"narrow"},{"name":"mitotic ubiquitin ligase activator","type":"narrow"},{"name":"positive regulation of ubiquitin ligase activity during mitotic cell cycle","type":"related"},{"name":"positive regulation of ubiquitin-protein ligase activity during mitotic cell cycle","type":"related"},{"name":"stimulation of ubiquitin ligase activity during mitotic cell cycle","type":"narrow"},{"name":"up regulation of ubiquitin ligase activity during mitotic cell cycle","type":"related"},{"name":"up-regulation of ubiquitin ligase activity during mitotic cell cycle","type":"related"},{"name":"upregulation of ubiquitin ligase activity during mitotic cell cycle","type":"related"}],"termid":"GO:0051437"}


id: GO:0002143
data:
  {"annotated_genes":["SJAG_00186","SJAG_03616","SJAG_00358","SJAG_03896","SJAG_04113","SJAG_01302","SJAG_03932"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[73604,74017,76404,102229,112277],"is_not":false,"summary":null,"term":"GO:0002143"},{"annotations":[89849,112057],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1990799"}]},"cv_name":"biological_process","definition":"The process in which a uridine residue at position 34 in the anticodon of a tRNA is post-transcriptionally thiolated at the C2 position. This process involves transfer of a sulfur from cysteine to position C2 by several steps.","definition_xrefs":["PMID:16871210"],"direct_ancestors":[{"relation_name":"is_a","term_name":"tRNA wobble uridine modification","termid":"GO:0002098"},{"relation_name":"is_a","term_name":"tRNA thio-modification","termid":"GO:0034227"}],"gene_count":7,"genes_by_uniquename":{"SJAG_00186":null,"SJAG_00358":null,"SJAG_01302":null,"SJAG_03616":null,"SJAG_03896":null,"SJAG_03932":null,"SJAG_04113":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006399"}],"interesting_parent_ids":["GO:0010467","GO:0006399","GO:0008150"],"is_obsolete":false,"name":"tRNA wobble position uridine thiolation","references_by_uniquename":{"GO_REF:0000107":null,"PMID:21873635":null},"synonyms":[{"name":"tRNA wobble uridine thiolation","type":"exact"},{"name":"wobble position s2U biosynthesis","type":"exact"}],"termid":"GO:0002143","terms_by_termid":{"GO:0002143":null,"GO:1990799":null}}


id: GO:0015628
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which proteins are secreted across the outer membrane of Gram-negative bacteria by the type II secretion system. Proteins using this pathway are first translocated across the cytoplasmic membrane via the Sec or Tat pathways.","definition_xrefs":["GOC:pamgo_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein secretion","termid":"GO:0009306"},{"relation_name":"is_a","term_name":"protein transport across the cell outer membrane","termid":"GO:0098776"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0055085"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0051179"}],"interesting_parent_ids":["GO:0051179","GO:0055085","GO:0008150","GO:0006810"],"is_obsolete":false,"name":"protein secretion by the type II secretion system","synonyms":[{"name":"protein secretion by the T2S","type":"exact"},{"name":"protein secretion by the T2SS","type":"exact"},{"name":"protein secretion by the general secretion pathway","type":"related"},{"name":"protein secretion by the general secretory pathway","type":"related"},{"name":"protein secretion by the type II protein secretion system","type":"exact"},{"name":"type II protein secretion system","type":"exact"}],"termid":"GO:0015628"}


id: PBO:0041761
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"calpain 1","termid":"PBO:0041761"}


id: GO:0007411
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemotaxis process that directs the migration of an axon growth cone to a specific target site in response to a combination of attractive and repulsive cues.","definition_xrefs":["ISBN:0878932437"],"direct_ancestors":[{"relation_name":"is_a","term_name":"neuron projection guidance","termid":"GO:0097485"},{"relation_name":"part_of","term_name":"axonogenesis","termid":"GO:0007409"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"axon guidance","secondary_identifiers":["GO:0008040","Wikipedia:Axon_guidance"],"synonyms":[{"name":"axon chemotaxis","type":"related"},{"name":"axon growth cone guidance","type":"narrow"},{"name":"axon pathfinding","type":"exact"}],"termid":"GO:0007411"}


id: GO:0050869
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of B cell activation.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of B cell activation","termid":"GO:0050864"},{"relation_name":"is_a","term_name":"negative regulation of lymphocyte activation","termid":"GO:0051250"},{"relation_name":"negatively_regulates","term_name":"B cell activation","termid":"GO:0042113"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of B cell activation","synonyms":[{"name":"down regulation of B cell activation","type":"exact"},{"name":"down-regulation of B cell activation","type":"exact"},{"name":"downregulation of B cell activation","type":"exact"},{"name":"inhibition of B cell activation","type":"narrow"},{"name":"negative regulation of B lymphocyte activation","type":"exact"},{"name":"negative regulation of B-cell activation","type":"exact"},{"name":"negative regulation of B-lymphocyte activation","type":"exact"}],"termid":"GO:0050869"}


id: PBO:0072681
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RUN and FYVE domain containing 2","termid":"PBO:0072681"}


id: FYPO:0005567
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell morphology phenotype in which a new growth zone forms along the lateral portion of the cell (often in the middle) before septation, such that a single cell grows in the form of the letter T, when the cell undergoes transition from G0 phase to G1. Cell length is normal.","definition_xrefs":["PomBase:mah","PomBase:vw"],"direct_ancestors":[{"relation_name":"is_a","term_name":"T-shaped cell during recovery from quiescence","termid":"FYPO:0005810"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0005568"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000005"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0001985","FYPO:0000005","FYPO:0000002","FYPO:0005568"],"is_obsolete":false,"name":"T-shaped cell during G0 to G1 transition","synonyms":[{"name":"T-shaped cell during cell cycle re-entry at G1","type":"exact"},{"name":"T-shaped cell during cell quiescence to G1 transition","type":"exact"},{"name":"T-shaped cell during exit from cell quiescence into G1","type":"exact"},{"name":"T-shaped cell during quiescence to G1 transition","type":"exact"},{"name":"T-shaped cell during recovery from quiescence following G1 arrest","type":"exact"},{"name":"T-shaped cell during recovery from quiescence into G1","type":"exact"},{"name":"cell morphology, T shaped during G0 to G1 transition","type":"exact"}],"termid":"FYPO:0005567"}


id: GO:2000739
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of mesenchymal stem cell differentiation.","definition_xrefs":["GOC:obol"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of stem cell differentiation","termid":"GO:2000736"},{"relation_name":"regulates","term_name":"mesenchymal stem cell differentiation","termid":"GO:0072497"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of mesenchymal stem cell differentiation","termid":"GO:2000739"}


id: PBO:0069577
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 850, pseudogene","termid":"PBO:0069577"}


id: FYPO:0007901
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of RNA-DNA hybrid molecules is greater than normal.","definition_xrefs":["PMID:29622660"],"direct_ancestors":[{"relation_name":"is_a","term_name":"altered level of substance in cell during vegetative growth","termid":"FYPO:0001323"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0001985","FYPO:0000002"],"is_obsolete":false,"name":"increased number of R-loops","synonyms":[{"name":"increased level of R-loops","type":"exact"},{"name":"increased level of RNA-DNA hybrids","type":"exact"}],"termid":"FYPO:0007901"}


id: GO:0051142
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of natural killer T cell proliferation.","definition_xrefs":["PMID:12154375","ISBN:0781735149","PMID:9133426"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of alpha-beta T cell proliferation","termid":"GO:0046641"},{"relation_name":"is_a","term_name":"positive regulation of NK T cell activation","termid":"GO:0051135"},{"relation_name":"is_a","term_name":"regulation of NK T cell proliferation","termid":"GO:0051140"},{"relation_name":"positively_regulates","term_name":"NK T cell proliferation","termid":"GO:0001866"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0007155"},{"rel_name":"positively_regulates","termid":"GO:0007155"}],"interesting_parent_ids":["GO:0008150","GO:0007155"],"is_obsolete":false,"name":"positive regulation of NK T cell proliferation","synonyms":[{"name":"activation of NK T cell proliferation","type":"narrow"},{"name":"positive regulation of NK T lymphocyte proliferation","type":"exact"},{"name":"positive regulation of NK T-cell proliferation","type":"exact"},{"name":"positive regulation of NK T-lymphocyte proliferation","type":"exact"},{"name":"positive regulation of NKT cell proliferation","type":"exact"},{"name":"positive regulation of NT cell proliferation","type":"exact"},{"name":"positive regulation of natural T cell proliferation","type":"exact"},{"name":"positive regulation of natural killer T cell proliferation","type":"exact"},{"name":"stimulation of NK T cell proliferation","type":"narrow"},{"name":"up regulation of NK T cell proliferation","type":"exact"},{"name":"up-regulation of NK T cell proliferation","type":"exact"},{"name":"upregulation of NK T cell proliferation","type":"exact"}],"termid":"GO:0051142"}


id: GO:0047639
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: a primary alcohol + O2 = an aldehyde + H2O2.","definition_xrefs":["EC:1.1.3.13","MetaCyc:ALCOHOL-OXIDASE-RXN"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the CH-OH group of donors, oxygen as acceptor","termid":"GO:0016899"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016491"],"is_obsolete":false,"name":"alcohol oxidase activity","secondary_identifiers":["RHEA:19829"],"synonyms":[{"name":"AOX activity","type":"related"},{"name":"alcohol:oxygen oxidoreductase activity","type":"related"},{"name":"ethanol oxidase activity","type":"related"}],"termid":"GO:0047639"}


id: GO:0000813
data:
  {"annotated_genes":["SJAG_04349","SJAG_01981"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[72304,83878],"is_not":false,"summary":null,"term":"GO:0000813"}]},"cv_name":"cellular_component","definition":"An endosomal sorting complex required for transport. It consists of the class E vacuolar protein sorting (Vps) proteins and interacts with ubiquitinated cargoes.","definition_xrefs":["PMID:12892785","PMID:12900393","GOC:rb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ESCRT complex","termid":"GO:0036452"},{"relation_name":"is_a","term_name":"membrane protein complex","termid":"GO:0098796"},{"relation_name":"part_of","term_name":"endosome membrane","termid":"GO:0010008"}],"gene_count":2,"genes_by_uniquename":{"SJAG_01981":null,"SJAG_04349":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"part_of","termid":"GO:0005768"},{"rel_name":"part_of","termid":"GO:0031410"}],"interesting_parent_ids":["GO:0005737","GO:0032991","GO:0005768","GO:0031410","GO:0005575"],"is_obsolete":false,"name":"ESCRT I complex","references_by_uniquename":{"GO_REF:0000107":null,"PMID:21873635":null},"synonyms":[{"name":"endosomal sorting complex required for transport","type":"broad"}],"termid":"GO:0000813","terms_by_termid":{"GO:0000813":null}}


id: PBO:0088815
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Ragulator complex subunit, human LAMTOR4 ortholog","termid":"PBO:0088815"}


id: PBO:0046199
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"elongin A3 family member C, pseudogene","termid":"PBO:0046199"}


id: GO:0009215
data:
  {"annotated_genes":["SJAG_00885","SJAG_04487"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[94491],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0035863"},{"annotations":[102597],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0009216"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways involving purine deoxyribonucleoside triphosphate, a compound consisting of a purine base linked to a deoxyribose sugar esterified with triphosphate on the sugar.","definition_xrefs":["ISBN:0198506732","GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"purine nucleoside triphosphate metabolic process","termid":"GO:0009144"},{"relation_name":"is_a","term_name":"deoxyribonucleoside triphosphate metabolic process","termid":"GO:0009200"}],"gene_count":2,"genes_by_uniquename":{"SJAG_00885":null,"SJAG_04487":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0055086"}],"interesting_parent_ids":["GO:0044281","GO:0055086","GO:0008150"],"is_obsolete":false,"name":"purine deoxyribonucleoside triphosphate metabolic process","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"purine deoxyribonucleoside triphosphate metabolism","type":"exact"}],"termid":"GO:0009215","terms_by_termid":{"GO:0009216":null,"GO:0035863":null}}


id: SO:0001351
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"5_methyl_2_thiouridine is a modified uridine base feature.","direct_ancestors":[{"relation_name":"is_a","term_name":"modified_uridine","termid":"SO:0001277"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"five_methyl_2_thiouridine","secondary_identifiers":["RNAMOD:059"],"synonyms":[{"name":"5-methyl-2-thiouridine","type":"exact"},{"name":"five methyl 2 thiouridine","type":"exact"},{"name":"m5s2U","type":"exact"}],"termid":"SO:0001351"}


id: GO:0060562
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which the anatomical structures of a tube are generated and organized from an epithelium. Epithelial tubes transport gases, liquids and cells from one site to another and form the basic structure of many organs and tissues, with tube shape and organization varying from the single-celled excretory organ in Caenorhabditis elegans to the branching trees of the mammalian kidney and insect tracheal system.","definition_xrefs":["GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"morphogenesis of an epithelium","termid":"GO:0002009"},{"relation_name":"is_a","term_name":"tube morphogenesis","termid":"GO:0035239"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"epithelial tube morphogenesis","termid":"GO:0060562"}


id: PBO:0076366
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"trace amine associated receptor 3, pseudogene","termid":"PBO:0076366"}


id: FYPO:0004107
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of protein measured in a cell during G2 phase of the mitotic cell cycle is normal (i.e. indistinguishable from wild type). Total protein or a specific protein may be affected.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal protein level during vegetative growth","termid":"FYPO:0000833"},{"relation_name":"is_a","term_name":"altered protein level during vegetative growth","termid":"FYPO:0001325"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0006551"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001312"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0006551","FYPO:0005447","FYPO:0000257","FYPO:0001312","FYPO:0001320","FYPO:0001985"],"is_obsolete":false,"name":"normal protein level during mitotic G2 phase","synonyms":[{"name":"normal protein accumulation during mitotic G2 phase","type":"related"},{"name":"normal protein level during G2 phase of mitotic cell cycle","type":"related"},{"name":"normal protein level during mitotic G2 phase during vegetative growth","type":"exact"}],"termid":"FYPO:0004107"}


id: GO:0060923
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The commitment of cells to specific cardiac muscle cell fates and their capacity to differentiate into cardiac muscle cells. Cardiac muscle cells are striated muscle cells that are responsible for heart contraction.","definition_xrefs":["GOC:mtg_heart"],"direct_ancestors":[{"relation_name":"is_a","term_name":"muscle cell fate commitment","termid":"GO:0042693"},{"relation_name":"is_a","term_name":"cardiac cell fate commitment","termid":"GO:0060911"},{"relation_name":"part_of","term_name":"cardiac muscle cell differentiation","termid":"GO:0055007"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cardiac muscle cell fate commitment","synonyms":[{"name":"cardiomyocyte cell fate commitment","type":"exact"},{"name":"heart muscle cell fate commitment","type":"exact"}],"termid":"GO:0060923"}


id: PBO:0047703
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"formin 2","termid":"PBO:0047703"}


id: PBO:0000147
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"oxoprolinase (predicted)","termid":"PBO:0000147"}


id: GO:0071895
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which a relatively unspecialized cell of neural crest origin acquires the specialized features of an odontoblast, a cell on the outer surface of the dental pulp whose biological function is the creation of dentin.","definition_xrefs":["GOC:sl","PMID:20425127"],"direct_ancestors":[{"relation_name":"is_a","term_name":"neuroepithelial cell differentiation","termid":"GO:0060563"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"odontoblast differentiation","termid":"GO:0071895"}


