# terms

id: PBO:0052229
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"potassium channel tetramerization domain containing 6","termid":"PBO:0052229"}


id: PBO:0087016
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Ribonucleotide-diphosphate reductase (RNR), small subunit; the RNR complex catalyzes the rate-limiting step in dNTP synthesis and is regulated by DNA replication and DNA damage checkpoint pathways via localization of the small subunits; RNR2 has a paralog, RNR4, that arose from the whole genome duplication","termid":"PBO:0087016"}


id: PBO:0076707
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transcription factor 7 like 1","termid":"PBO:0076707"}


id: PBO:0027907
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-inviable_after_spore_germination,_single_or_double_cell_division,_elongated_multiseptate_cell_with_fragmented_nucleus","termid":"PBO:0027907"}


id: PBO:0055172
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2596","termid":"PBO:0055172"}


id: PBO:0028695
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_transcription_termination","termid":"PBO:0028695"}


id: PBO:0041522
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chromosome 16 open reading frame 74","termid":"PBO:0041522"}


id: GO:0002692
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate, or extent of cellular extravasation.","definition_xrefs":["GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of leukocyte migration","termid":"GO:0002686"},{"relation_name":"is_a","term_name":"regulation of cellular extravasation","termid":"GO:0002691"},{"relation_name":"negatively_regulates","term_name":"cellular extravasation","termid":"GO:0045123"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of cellular extravasation","synonyms":[{"name":"down regulation of cellular extravasation","type":"exact"},{"name":"down-regulation of cellular extravasation","type":"exact"},{"name":"downregulation of cellular extravasation","type":"exact"},{"name":"inhibition of cellular extravasation","type":"narrow"}],"termid":"GO:0002692"}


id: PBO:0059576
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"metallothionein 3","termid":"PBO:0059576"}


id: PBO:0028500
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_growth_on_amitrole","termid":"PBO:0028500"}


id: PBO:0057319
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 518f","termid":"PBO:0057319"}


id: GO:1905942
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of formation of growth cone in injured axon.","definition_xrefs":["GO_REF:0000058","GOC:TermGenie","PMID:19737525"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of sprouting of injured axon","termid":"GO:0048686"},{"relation_name":"regulates","term_name":"formation of growth cone in injured axon","termid":"GO:0048689"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of formation of growth cone in injured axon","termid":"GO:1905942"}


id: PBO:0045167
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DnaJ heat shock protein family (Hsp40) member A1 pseudogene 1","termid":"PBO:0045167"}


id: GO:0032470
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that increases the concentration of calcium ions in the endoplasmic reticulum.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"endoplasmic reticulum calcium ion homeostasis","termid":"GO:0032469"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0098771"}],"interesting_parent_ids":["GO:0098771","GO:0008150"],"is_obsolete":false,"name":"positive regulation of endoplasmic reticulum calcium ion concentration","synonyms":[{"name":"elevation of ER calcium ion concentration","type":"exact"},{"name":"elevation of calcium ion concentration in endoplasmic reticulum","type":"exact"},{"name":"elevation of endoplasmic reticulum calcium ion concentration","type":"exact"},{"name":"endoplasmic reticulum calcium ion concentration elevation","type":"exact"}],"termid":"GO:0032470"}


id: PBO:0073772
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"solute carrier family 4 member 5","termid":"PBO:0073772"}


id: PBO:0077267
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transmembrane protein 9","termid":"PBO:0077267"}


id: PBO:0061914
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 1 subfamily D member 2","termid":"PBO:0061914"}


id: GO:0045247
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A protein complex located in the cytosol containing flavin adenine dinucleotide (FAD) that, together with an acyl-CoA dehydrogenase, forms a system that oxidizes an acyl-CoA molecule and reduces ubiquinone and other acceptors.","definition_xrefs":["GOC:mtg_sensu","ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"electron transfer flavoprotein complex","termid":"GO:0045251"},{"relation_name":"part_of","term_name":"cytosol","termid":"GO:0005829"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005829"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0005737"}],"interesting_parent_ids":["GO:0005829","GO:0005575","GO:0032991","GO:0005737"],"is_obsolete":false,"name":"cytosolic electron transfer flavoprotein complex","termid":"GO:0045247"}


id: GO:0017080
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binds to and modulates the activity of a sodium channel.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ion channel regulator activity","termid":"GO:0099106"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0098772"}],"interesting_parent_ids":["GO:0098772","GO:0003674"],"is_obsolete":false,"name":"sodium channel regulator activity","termid":"GO:0017080"}


id: PBO:0002632
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Golgi transport complex subunit Cog1 (predicted)","termid":"PBO:0002632"}


id: FYPO:0003695
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A physical cellular phenotype observed in the vegetative growth phase of the life cycle in which cells contain fewer free small ribosomal subunits in the cytosol than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"altered level of macromolecular complex during vegetative growth","termid":"FYPO:0003684"},{"relation_name":"is_a","term_name":"abnormal cellular physical quality phenotype during vegetative growth","termid":"FYPO:0004639"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0001320","FYPO:0000002"],"is_obsolete":false,"name":"decreased cytosolic small ribosomal subunit level","synonyms":[{"name":"cytosolic small ribosomal subunit present at decreased level","type":"exact"},{"name":"decreased 40S ribosomal subunit level","type":"exact"},{"name":"decreased cytosolic small ribosomal subunit level during mitotic cell cycle","type":"related"},{"name":"decreased cytosolic small ribosomal subunit level during vegetative growth","type":"exact"},{"name":"decreased level of cytosolic small ribosomal subunits","type":"related"},{"name":"decreased small ribosomal subunit level","type":"broad"},{"name":"reduced cytosolic small ribosomal subunit level","type":"exact"}],"termid":"FYPO:0003695"}


id: FYPO:0001038
data:
  {"alleles_by_uniquename":{"SJAG_01787:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_01787","name":"pck1delta","uniquename":"SJAG_01787:allele-1"}},"annotation_feature_type":"genotype","cv_annotations":{"single_locus_phenotype":[{"annotations":[114151],"is_not":false,"summary":null,"term":"FYPO:0001038"}]},"cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the phosphorylation of one or more specific proteins occurs to a greater extent than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased protein modification during vegetative growth","termid":"FYPO:0000547"},{"relation_name":"is_a","term_name":"abnormal protein phosphorylation during vegetative growth","termid":"FYPO:0000775"},{"relation_name":"is_a","term_name":"increased protein phosphorylation","termid":"FYPO:0002680"}],"gene_count":1,"genes_by_uniquename":{"SJAG_01787":null,"SJAG_04551":null},"genotype_count":1,"genotypes_by_uniquename":{"pck1delta":{"display_name":"pck1delta","display_uniquename":"pck1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01787:allele-1","expression":"Null"}]}]}},"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0002274"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0002494"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0002494","FYPO:0001320","FYPO:0002274","FYPO:0005447","FYPO:0001985","FYPO:0000002"],"is_obsolete":false,"name":"increased protein phosphorylation during vegetative growth","references_by_uniquename":{"PMID:34198697":null},"single_locus_annotated_genes":["SJAG_01787"],"single_locus_genotype_uniquenames":["pck1delta"],"synonyms":[{"name":"increased protein phosphorylation during mitotic cell cycle","type":"related"}],"termid":"FYPO:0001038","terms_by_termid":{"FYPO:0001038":null}}


id: GO:0071802
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the rate or extent of podosome assembly.","definition_xrefs":["GOC:mah","GOC:sl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of protein-containing complex assembly","termid":"GO:0031333"},{"relation_name":"is_a","term_name":"regulation of podosome assembly","termid":"GO:0071801"},{"relation_name":"is_a","term_name":"negative regulation of organelle assembly","termid":"GO:1902116"},{"relation_name":"negatively_regulates","term_name":"podosome assembly","termid":"GO:0071800"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0044085"},{"rel_name":"negatively_regulates","termid":"GO:0065003"},{"rel_name":"regulates","termid":"GO:0065003"}],"interesting_parent_ids":["GO:0044085","GO:0065003","GO:0008150"],"is_obsolete":false,"name":"negative regulation of podosome assembly","synonyms":[{"name":"down regulation of podosome assembly","type":"exact"},{"name":"down-regulation of podosome assembly","type":"exact"},{"name":"downregulation of podosome assembly","type":"exact"},{"name":"inhibition of podosome assembly","type":"narrow"}],"termid":"GO:0071802"}


id: GO:0099529
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Neurotransmitter receptor activity occurring in the postsynaptic membrane that is involved in regulating postsynaptic membrane potential, either directly (ionotropic receptors) or indirectly (e.g. via GPCR activation of an ion channel).","definition_xrefs":["GOC:dos"],"direct_ancestors":[{"relation_name":"is_a","term_name":"postsynaptic neurotransmitter receptor activity","termid":"GO:0098960"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0038023"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0038023","GO:0003674"],"is_obsolete":false,"name":"neurotransmitter receptor activity involved in regulation of postsynaptic membrane potential","termid":"GO:0099529"}


id: PBO:0070127
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U7 small nuclear 41 pseudogene","termid":"PBO:0070127"}


id: PBO:0053974
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1285","termid":"PBO:0053974"}


id: PBO:0034697
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene characterisation status","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Schizosaccharomyces_specific_protein,_uncharacterized","termid":"PBO:0034697"}


id: PBO:0046122
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"eukaryotic translation initiation factor 4E pseudogene 1","termid":"PBO:0046122"}


id: GO:0006542
data:
  {"annotated_genes":["SJAG_00359"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[71470],"is_not":false,"summary":null,"term":"GO:0006542"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of glutamine, 2-amino-4-carbamoylbutanoic acid.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"glutamine metabolic process","termid":"GO:0006541"},{"relation_name":"is_a","term_name":"glutamine family amino acid biosynthetic process","termid":"GO:0009084"}],"gene_count":1,"genes_by_uniquename":{"SJAG_00359":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0006520"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0044281","GO:0006520","GO:0008150"],"is_obsolete":false,"name":"glutamine biosynthetic process","references_by_uniquename":{"PMID:21873635":null},"secondary_identifiers":["MetaCyc:GLNSYN-PWY"],"synonyms":[{"name":"glutamine anabolism","type":"exact"},{"name":"glutamine biosynthesis","type":"exact"},{"name":"glutamine formation","type":"exact"},{"name":"glutamine synthesis","type":"exact"}],"termid":"GO:0006542","terms_by_termid":{"GO:0006542":null}}


id: GO:0048394
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which a cell becomes capable of differentiating autonomously into a intermediate mesoderm cell regardless of its environment; upon determination, the cell fate cannot be reversed.","definition_xrefs":["GOC:dgh"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mesodermal cell fate determination","termid":"GO:0007500"},{"relation_name":"part_of","term_name":"intermediate mesodermal cell fate commitment","termid":"GO:0048393"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"intermediate mesodermal cell fate determination","synonyms":[{"name":"intermediate mesoderm cell fate determination","type":"exact"}],"termid":"GO:0048394"}


id: GO:0006551
data:
  {"annotated_genes":["SJAG_00396","SJAG_04149","SJAG_03562","SJAG_02841","SJAG_03243","SJAG_04098","SJAG_03985","SJAG_06635"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[106338],"is_not":false,"summary":null,"term":"GO:0006551"},{"annotations":[86363,75905,78411,74298,96286,98696,108449],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0009098"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways involving leucine, 2-amino-4-methylpentanoic acid.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"branched-chain amino acid metabolic process","termid":"GO:0009081"},{"relation_name":"is_a","term_name":"alpha-amino acid metabolic process","termid":"GO:1901605"}],"gene_count":8,"genes_by_uniquename":{"SJAG_00396":null,"SJAG_02841":null,"SJAG_03243":null,"SJAG_03562":null,"SJAG_03985":null,"SJAG_04098":null,"SJAG_04149":null,"SJAG_06635":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006520"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006520","GO:0044281","GO:0008150"],"is_obsolete":false,"name":"leucine metabolic process","references_by_uniquename":{"GO_REF:0000107":null,"PMID:21873635":null},"synonyms":[{"name":"leucine metabolism","type":"exact"}],"termid":"GO:0006551","terms_by_termid":{"GO:0006551":null,"GO:0009098":null}}


id: GO:0003086
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which angiotensinogen metabolites in the kidney modulate the force with which blood passes through the renal circulatory system. The process begins when renin cleaves angiotensinogen.","definition_xrefs":["GOC:mtg_cardio"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of systemic arterial blood pressure by renin-angiotensin","termid":"GO:0003081"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of systemic arterial blood pressure by local renal renin-angiotensin","termid":"GO:0003086"}


id: GO:0006163
data:
  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id: GO:0031320
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id: GO:0038045
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id: GO:0048444
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id: GO:0038071
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id: GO:0004896
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id: GO:0033622
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id: GO:0002496
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id: PBO:0045245
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id: PBO:0065852
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id: PBO:0038763
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id: PBO:0064098
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id: SO:0000452
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id: PBO:0072269
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id: PBO:0063157
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id: GO:1901459
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id: PBO:0067442
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id: GO:0140830
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: H+(in) + L-glutamine(out) + Na+(out) = H+(out) + L-glutamine(in) + Na+(in).","definition_xrefs":["PMID:10619430","PMID:11742981","PMID:11850497"],"direct_ancestors":[{"relation_name":"is_a","term_name":"L-glutamine transmembrane transporter activity","termid":"GO:0015186"},{"relation_name":"is_a","term_name":"sodium:proton antiporter activity","termid":"GO:0015385"},{"relation_name":"is_a","term_name":"amino acid:monoatomic cation antiporter activity","termid":"GO:0140848"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005215"}],"interesting_parent_ids":["GO:0005215","GO:0022857","GO:0003674"],"is_obsolete":false,"name":"L-glutamine, sodium:proton antiporter activity","secondary_identifiers":["RHEA:71127"],"termid":"GO:0140830"}


id: FYPO:0007238
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which the occurrence of two crossovers within a given interval during meiosis I is higher than normal.","definition_xrefs":["PomBase:mah","PMID:30217891"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal meiotic recombination","termid":"FYPO:0000008"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000293"},{"rel_name":"is_a","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0005447","FYPO:0000293","FYPO:0000631","FYPO:0000002"],"is_obsolete":false,"name":"increased meiotic double crossover formation","synonyms":[{"name":"decreased crossover interference","type":"exact"}],"termid":"FYPO:0007238"}


id: PR:Q10241
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- cmb1 gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q10241"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mismatch-binding protein cmb1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC4G9.11c","synonyms":[{"name":"Spom972h-cmb1","type":"exact"}],"termid":"PR:Q10241"}


id: GO:0015105
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Enables the transfer of arsenite from one side of a membrane to the other.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"inorganic anion transmembrane transporter activity","termid":"GO:0015103"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0022857"}],"interesting_parent_ids":["GO:0005215","GO:0022857","GO:0003674"],"is_obsolete":false,"name":"arsenite transmembrane transporter activity","termid":"GO:0015105"}


id: PBO:0059571
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"metallothionein 1 pseudogene 3","termid":"PBO:0059571"}


id: PBO:0040141
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"achaete-scute family bHLH transcription factor 4","termid":"PBO:0040141"}


id: GO:0047482
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: L-lysine + ATP + UDP-N-acetylmuramoyl-L-alanyl-D-glutamate = ADP + 2 H+ + phosphate + UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-L-lysine.","definition_xrefs":["EC:6.3.2.7","RHEA:17969"],"direct_ancestors":[{"relation_name":"is_a","term_name":"acid-amino acid ligase activity","termid":"GO:0016881"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016874"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016874"],"is_obsolete":false,"name":"UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-L-lysine ligase activity","secondary_identifiers":["MetaCyc:6.3.2.7-RXN","KEGG_REACTION:R02786"],"synonyms":[{"name":"L-lysine-adding enzyme activity","type":"related"},{"name":"MurE synthetase activity","type":"related"},{"name":"UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:L-lysine gamma-ligase (ADP-forming)","type":"related"},{"name":"UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-L-lysine synthetase activity","type":"related"},{"name":"UPD-MurNAc-L-Ala-D-Glu:L-Lys ligase activity","type":"related"},{"name":"uridine diphospho-N-acetylmuramoylalanyl-D-glutamyllysine synthetase activity","type":"related"}],"termid":"GO:0047482"}


id: SO:0002380
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A gene that codes for pseudouridylation_guide_snoRNA. A snoRNA that specifies the site of pseudouridylation in an RNA molecule by base pairing with a short sequence around the target residue.","definition_xrefs":["PMID:12457565"],"direct_ancestors":[{"relation_name":"is_a","term_name":"H_ACA_box_snoRNA_gene","termid":"SO:0002376"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pseudouridylation_guide_snoRNA_gene","synonyms":[{"name":"pseudouridylation guide snoRNA gene","type":"exact"}],"termid":"SO:0002380"}


id: GO:0031215
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The precipitation of calcium carbonate onto the organic matrix of a shell, such as a mollusc shell.","definition_xrefs":["PMID:15132736","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"biomineral tissue development","termid":"GO:0031214"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"shell calcification","termid":"GO:0031215"}


id: PBO:0017458
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-hyperparasitized_by","termid":"PBO:0017458"}


id: GO:0071203
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A protein complex that localizes at the surface of endosomes, where it recruits and activates the Arp2/3 complex to induce actin polymerization. In human, the WASH complex is composed of F-actin-capping protein subunits alpha and beta, WASH1, FAM21, KIAA1033, KIAA0196 and CCDC53.","definition_xrefs":["PMID:19922875","GOC:sp"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein-containing complex","termid":"GO:0032991"},{"relation_name":"part_of","term_name":"cytoplasm","termid":"GO:0005737"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0005737"}],"interesting_parent_ids":["GO:0005575","GO:0032991","GO:0005737"],"is_obsolete":false,"name":"WASH complex","termid":"GO:0071203"}


id: PATO:0002261
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A spatial quality inhering in a bearer by virtue of the bearer's location within another entity.","definition_xrefs":["PATOC:WD"],"direct_ancestors":[{"relation_name":"is_a","term_name":"position","termid":"PATO:0000140"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"located in","termid":"PATO:0002261"}


id: GO:0097148
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A homodimeric protein complex consisting of BCL-2, a member of the Bcl-2 family of anti- and proapoptotic regulators.","definition_xrefs":["GOC:so","PMID:14634621","GOC:bhm"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Bcl-2 family protein complex","termid":"GO:0097136"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0032991","GO:0005575"],"is_obsolete":false,"name":"BCL-2 complex","termid":"GO:0097148"}


id: PBO:0041281
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"C1q and TNF related 7","termid":"PBO:0041281"}


id: PBO:0052329
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"KIAA1614 antisense RNA 1","termid":"PBO:0052329"}


id: PR:O14144
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- erv1 gene.","definition_xrefs":["UniProtKB:O14144","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial FAD-linked sulfhydryl oxidase erv1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC3G6.08","synonyms":[{"name":"Spom972h-erv1","type":"exact"}],"termid":"PR:O14144"}


id: FYPO:0003021
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A phenotype observed in the vegetative growth phase of the life cycle in which cells show increased sensitivity to ethyl N-phenylcarbamate (EPC). Cells stop growing (and may die) at a concentration of EPC that allows wild type cells to grow.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased sensitivity to chemical during vegetative growth","termid":"FYPO:0000127"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0002683"},{"rel_name":"is_a","termid":"FYPO:0000139"},{"rel_name":"is_a","termid":"FYPO:0000003"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0000139","FYPO:0005447","FYPO:0002683","FYPO:0000003","FYPO:0001985"],"is_obsolete":false,"name":"sensitive to EPC","synonyms":[{"name":"hypersensitive to EPC","type":"exact"},{"name":"sensitive to EPC during mitotic cell cycle","type":"related"},{"name":"sensitive to EPC during vegetative growth","type":"exact"},{"name":"sensitive to ethyl N-phenylcarbamate","type":"exact"}],"termid":"FYPO:0003021"}


id: PBO:0005440
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"3'-5' exonuclease for RNA 3' ss-tail","termid":"PBO:0005440"}


id: PBO:0089018
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"serine/threonine protein kinase (CK1 family) Cki3","termid":"PBO:0089018"}


id: PR:P0C5Y7
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- ten1 gene.","definition_xrefs":["PRO:DNx","UniProtKB:P0C5Y7"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protein ten1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC1393.14","synonyms":[{"name":"Spom972h-ten1","type":"exact"}],"termid":"PR:P0C5Y7"}


id: GO:0042205
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of chlorinated hydrocarbons, compounds derived from hydrocarbons by replacing one or more hydrogen atoms with chlorine atoms.","definition_xrefs":["GOC:krc","GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"chlorinated hydrocarbon metabolic process","termid":"GO:0042196"},{"relation_name":"is_a","term_name":"halogenated hydrocarbon catabolic process","termid":"GO:0042206"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044248"}],"interesting_parent_ids":["GO:0008150","GO:0044248"],"is_obsolete":false,"name":"chlorinated hydrocarbon catabolic process","synonyms":[{"name":"chlorinated hydrocarbon breakdown","type":"exact"},{"name":"chlorinated hydrocarbon catabolism","type":"exact"},{"name":"chlorinated hydrocarbon degradation","type":"exact"}],"termid":"GO:0042205"}


id: GO:0046911
data:
  {"annotated_genes":["SJAG_00988"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[88907],"is_not":false,"summary":null,"term":"GO:0046911"}]},"cv_name":"molecular_function","definition":"The formation of bonds from two or more atoms within the same ligand to a metal atom in complexes in which the metal is part of a ring.","definition_xrefs":["ISBN:0716731363","ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"metal ion binding","termid":"GO:0046872"}],"gene_count":1,"genes_by_uniquename":{"SJAG_00988":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0046872"},{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0046872","GO:0003674","GO:0005488"],"is_obsolete":false,"name":"metal chelating activity","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"heavy metal chelation","type":"narrow"},{"name":"metal chelation","type":"exact"}],"termid":"GO:0046911","terms_by_termid":{"GO:0046911":null}}


id: PBO:0079497
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"thioredoxin interacting protein","termid":"PBO:0079497"}


id: SO:0000367
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A region within an integron, adjacent to an integrase, at which site specific recombination involving an attC_site takes place.","definition_xrefs":["SO:as"],"direct_ancestors":[{"relation_name":"is_a","term_name":"integration_excision_site","termid":"SO:0000946"},{"relation_name":"part_of","term_name":"integron","termid":"SO:0000365"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"attI_site","synonyms":[{"name":"attI site","type":"exact"}],"termid":"SO:0000367"}


id: PR:P10989
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- act1 gene.","definition_xrefs":["PRO:DNx","UniProtKB:P10989"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"actin (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC32H8.12c","synonyms":[{"name":"Spom972h-act1","type":"exact"}],"termid":"PR:P10989"}


id: GO:0071498
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a fluid shear stress stimulus. Fluid shear stress is the force acting on an object in a system where the fluid is moving across a solid surface.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular response to stress","termid":"GO:0033554"},{"relation_name":"is_a","term_name":"response to fluid shear stress","termid":"GO:0034405"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cellular response to fluid shear stress","termid":"GO:0071498"}


id: PBO:0073201
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"semaphorin 3B","termid":"PBO:0073201"}


id: GO:1901211
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of cardiac chamber formation.","definition_xrefs":["GOC:BHF","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of developmental process","termid":"GO:0051093"},{"relation_name":"is_a","term_name":"regulation of cardiac chamber formation","termid":"GO:1901210"},{"relation_name":"negatively_regulates","term_name":"cardiac chamber formation","termid":"GO:0003207"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of cardiac chamber formation","synonyms":[{"name":"down regulation of cardiac chamber formation","type":"exact"},{"name":"down regulation of heart chamber formation","type":"exact"},{"name":"down-regulation of cardiac chamber formation","type":"exact"},{"name":"down-regulation of heart chamber formation","type":"exact"},{"name":"downregulation of cardiac chamber formation","type":"exact"},{"name":"downregulation of heart chamber formation","type":"exact"},{"name":"inhibition of cardiac chamber formation","type":"narrow"},{"name":"inhibition of heart chamber formation","type":"exact"},{"name":"negative regulation of heart chamber formation","type":"exact"}],"termid":"GO:1901211"}


id: PBO:0063103
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"poly(ADP-ribose) glycohydrolase pseudogene 1","termid":"PBO:0063103"}


id: PBO:0011170
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PXA domain protein","termid":"PBO:0011170"}


id: PBO:0054037
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1372","termid":"PBO:0054037"}


id: GO:0032433
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The end of a filopodium distal to the body of the cell.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular anatomical entity","termid":"GO:0110165"},{"relation_name":"part_of","term_name":"filopodium","termid":"GO:0030175"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"filopodium tip","termid":"GO:0032433"}


id: PBO:0005278
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"kinetochore protein Spc7","termid":"PBO:0005278"}


id: GO:0021741
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of the spinal trigeminal nucleus over time, from its formation to the mature structure.","definition_xrefs":["GOC:jid","GO_REF:0000021","GOC:curators","GOC:cls","GOC:dgh","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"trigeminal sensory nucleus development","termid":"GO:0021730"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"spinal trigeminal nucleus development","termid":"GO:0021741"}


id: SO:0001707
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A kind of histone modification site, whereby the 9th residue (a lysine), from the start of the H3 histone protein is tri-methylated.","direct_ancestors":[{"relation_name":"is_a","term_name":"H3K9_methylation_site","termid":"SO:0001736"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"SO:0000839"}],"interesting_parent_ids":["SO:0000839"],"is_obsolete":false,"name":"H3K9_trimethylation_site","synonyms":[{"name":"H3K9 tri-methylation site","type":"exact"},{"name":"H3K9Me3","type":"related"}],"termid":"SO:0001707"}


id: GO:0045722
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of gluconeogenesis.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of gluconeogenesis","termid":"GO:0006111"},{"relation_name":"is_a","term_name":"positive regulation of glucose metabolic process","termid":"GO:0010907"},{"relation_name":"is_a","term_name":"positive regulation of cellular biosynthetic process","termid":"GO:0031328"},{"relation_name":"positively_regulates","term_name":"gluconeogenesis","termid":"GO:0006094"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0044281"},{"rel_name":"positively_regulates","termid":"GO:0044281"},{"rel_name":"regulates","termid":"GO:0005975"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"positively_regulates","termid":"GO:0005975"}],"interesting_parent_ids":["GO:0044281","GO:0005975","GO:0008150"],"is_obsolete":false,"name":"positive regulation of gluconeogenesis","synonyms":[{"name":"activation of gluconeogenesis","type":"narrow"},{"name":"stimulation of gluconeogenesis","type":"narrow"},{"name":"up regulation of gluconeogenesis","type":"exact"},{"name":"up-regulation of gluconeogenesis","type":"exact"},{"name":"upregulation of gluconeogenesis","type":"exact"}],"termid":"GO:0045722"}


id: GO:0004512
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: D-glucose 6-phosphate = 1D-myo-inositol 3-phosphate. This reaction requires NAD, which dehydrogenates the CHOH group to CO at C-5 of the glucose 6-phosphate, making C-6 into an active methylene, able to condense with the aldehyde at C-1. Finally, the enzyme-bound NADH reconverts C-5 into the CHOH form.","definition_xrefs":["RHEA:10716","EC:5.5.1.4"],"direct_ancestors":[{"relation_name":"is_a","term_name":"intramolecular lyase activity","termid":"GO:0016872"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016853"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016853","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"inositol-3-phosphate synthase activity","secondary_identifiers":["MetaCyc:MYO-INOSITOL-1-PHOSPHATE-SYNTHASE-RXN","Reactome:R-HSA-1855178","KEGG_REACTION:R07324"],"synonyms":[{"name":"1L-myo-inositol-1-phosphate lyase (isomerizing)","type":"related"},{"name":"D-glucose 6-phosphate cycloaldolase activity","type":"related"},{"name":"glucocycloaldolase activity","type":"related"},{"name":"glucose 6-phosphate cyclase activity","type":"related"},{"name":"glucose-6-phosphate inositol monophosphate cycloaldolase activity","type":"related"},{"name":"inositol 1-phosphate synthatase activity","type":"related"},{"name":"inositol 1-phosphate synthetase activity","type":"related"}],"termid":"GO:0004512"}


id: PBO:0078090
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"trafficking protein particle complex 2 pseudogene 7","termid":"PBO:0078090"}


id: GO:1905385
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of protein localization to presynapse.","definition_xrefs":["GO_REF:0000058","GOC:bf","GOC:TermGenie","GOC:PARL","PMID:24449494"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of protein localization","termid":"GO:1903828"},{"relation_name":"is_a","term_name":"regulation of protein localization to presynapse","termid":"GO:1905384"},{"relation_name":"negatively_regulates","term_name":"protein localization to presynapse","termid":"GO:1905383"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of protein localization to presynapse","synonyms":[{"name":"down regulation of protein localisation in presynapse","type":"exact"},{"name":"down regulation of protein localisation to presynapse","type":"exact"},{"name":"down regulation of protein localization in presynapse","type":"exact"},{"name":"down regulation of protein localization to presynapse","type":"exact"},{"name":"down regulation of recruitment of presynaptic proteins","type":"exact"},{"name":"down-regulation of protein localisation in presynapse","type":"exact"},{"name":"down-regulation of protein localisation to presynapse","type":"exact"},{"name":"down-regulation of protein localization in presynapse","type":"exact"},{"name":"down-regulation of protein localization to presynapse","type":"exact"},{"name":"down-regulation of recruitment of presynaptic proteins","type":"exact"},{"name":"downregulation of protein localisation in presynapse","type":"exact"},{"name":"downregulation of protein localisation to presynapse","type":"exact"},{"name":"downregulation of protein localization in presynapse","type":"exact"},{"name":"downregulation of protein localization to presynapse","type":"exact"},{"name":"downregulation of recruitment of presynaptic proteins","type":"exact"},{"name":"inhibition of protein localisation in presynapse","type":"narrow"},{"name":"inhibition of protein localisation to presynapse","type":"narrow"},{"name":"inhibition of protein localization in presynapse","type":"narrow"},{"name":"inhibition of protein localization to presynapse","type":"narrow"},{"name":"inhibition of recruitment of presynaptic proteins","type":"narrow"},{"name":"negative regulation of protein localisation in presynapse","type":"exact"},{"name":"negative regulation of protein localisation to presynapse","type":"exact"},{"name":"negative regulation of protein localization in presynapse","type":"exact"},{"name":"negative regulation of recruitment of presynaptic proteins","type":"exact"}],"termid":"GO:1905385"}


id: PBO:0053545
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 551","termid":"PBO:0053545"}


id: GO:0035384
data:
  {"annotated_genes":["SJAG_01139","SJAG_02741","SJAG_01402","SJAG_02158","SJAG_03290","SJAG_03064","SJAG_04007","SJAG_03313","SJAG_00866","SJAG_03731","SJAG_00982","SJAG_02006"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[93889,88851],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006085"},{"annotations":[111222],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0019427"},{"annotations":[112145],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1990181"},{"annotations":[73149,74153,77801,83195,72445,94534],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006086"},{"annotations":[102806],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0035338"},{"annotations":[93869],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:2001295"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of a thioester, a compound of general formula RC(=O)SR' in which the linking oxygen in an ester is replaced by a sulfur atom. They are the product of esterification between a carboxylic acid and a thiol.","definition_xrefs":["GOC:bf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"thioester metabolic process","termid":"GO:0035383"},{"relation_name":"is_a","term_name":"sulfur compound biosynthetic process","termid":"GO:0044272"},{"relation_name":"is_a","term_name":"organic substance biosynthetic process","termid":"GO:1901576"}],"gene_count":12,"genes_by_uniquename":{"SJAG_00866":null,"SJAG_00982":null,"SJAG_01139":null,"SJAG_01402":null,"SJAG_02006":null,"SJAG_02158":null,"SJAG_02741":null,"SJAG_03064":null,"SJAG_03290":null,"SJAG_03313":null,"SJAG_03731":null,"SJAG_04007":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006790"}],"interesting_parent_ids":["GO:0008150","GO:0006790"],"is_obsolete":false,"name":"thioester biosynthetic process","references_by_uniquename":{"GO_REF:0000107":null,"PMID:21873635":null},"synonyms":[{"name":"thioester anabolism","type":"exact"},{"name":"thioester biosynthesis","type":"exact"},{"name":"thioester formation","type":"exact"},{"name":"thioester synthesis","type":"exact"}],"termid":"GO:0035384","terms_by_termid":{"GO:0006085":null,"GO:0006086":null,"GO:0019427":null,"GO:0035338":null,"GO:1990181":null,"GO:2001295":null}}


id: PR:O74455
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A 6-phosphogluconolactonase that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PANTHER:PTHR11054:SF0","PRO:DNx","OMA:SCHPO04412"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"6-phosphogluconolactonase (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC16C4.10","secondary_identifiers":["UniProtKB:O74455"],"synonyms":[{"name":"6PGL (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-PGLS","type":"exact"}],"termid":"PR:O74455"}


id: PBO:0070052
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6atac small nuclear 9, pseudogene","termid":"PBO:0070052"}


id: FYPO:0000333
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell cycle phenotype in which the G1/S transition of the mitotic cell cycle begins later than normal. The duration of G1 phase is thus longer than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal mitotic G1/S phase transition","termid":"FYPO:0000394"},{"relation_name":"is_a","term_name":"delayed cell cycle phase transition","termid":"FYPO:0000409"},{"relation_name":"is_a","term_name":"abnormal mitotic G1 phase progression","termid":"FYPO:0000602"},{"relation_name":"is_a","term_name":"increased duration of mitotic cell cycle phase","termid":"FYPO:0001069"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0000631","FYPO:0005447","FYPO:0000002","FYPO:0001320","FYPO:0001985"],"is_obsolete":false,"name":"mitotic G1/S phase transition delay","secondary_identifiers":["FYPO:0000396","FYPO:0000480","FYPO:0000543"],"synonyms":[{"name":"G1/S transition delay during mitotic cell cycle","type":"related"},{"name":"cell cycle progression through the G1/S phase transition: delayed","type":"related"},{"name":"delayed cell cycle progression through mitotic G1/S phase transition","type":"exact"},{"name":"delayed mitotic G1 phase progression","type":"related"},{"name":"increased duration of mitotic G1 phase","type":"related"},{"name":"increased duration of mitotic G1 phase during vegetative growth","type":"related"},{"name":"increased duration of mitotic G1 phase progression","type":"related"},{"name":"mitotic G1/S phase transition delay during vegetative growth","type":"exact"},{"name":"mitotic G1/S transition delay","type":"exact"},{"name":"mitotic cell cycle delay at G1/S transition","type":"exact"},{"name":"mitotic cell cycle delay in G1","type":"related"},{"name":"mitotic cell cycle progression in G1 phase: delayed","type":"related"},{"name":"mitotic cell cycle progression in G1 phase: increased duration","type":"related"},{"name":"transient cell cycle arrest in mitotic G1 phase","type":"exact"}],"termid":"FYPO:0000333"}


id: FYPO:0006745
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A physical cellular phenotype observed in the vegetative growth phase of the life cycle in which the thickness of the cell wall is abnormal. The wall may be uniformly thicker or thinner than normal, or thickness may be irregular.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal cell wall morphology during vegetative growth","termid":"FYPO:0000351"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0002946"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001320","FYPO:0002946","FYPO:0001985"],"is_obsolete":false,"name":"abnormal cell wall thickness during vegetative growth","synonyms":[{"name":"abnormal cell wall thickness during mitotic cell cycle","type":"related"}],"termid":"FYPO:0006745"}


id: PBO:0083954
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Gamma-tubulin small complex (gamma-TuSC) receptor; recruits the gamma-TuSC complex to the cytoplasmic side of the SPB, connecting nuclear microtubules to the SPB; involved in astral microtubule formation, stabilization, and with Stu2p, anchoring astral MTs at the cytoplasmic face of the SPB, and regulating plus-end MT dynamics; regulated by Cdc5 kinase","termid":"PBO:0083954"}


id: GO:1901101
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The chemical reactions and pathways involving gramicidin S.","definition_xrefs":["GOC:TermGenie","GOC:yaf","UniPathway:UPA00102"],"gene_count":0,"genotype_count":0,"name":"obsolete gramicidin S metabolic process (obsolete GO:1901101)","synonyms":[{"name":"gramicidin S metabolism","type":"exact"}],"termid":"GO:1901101"}


id: GO:0046465
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving dolichyl diphosphate, a diphosphorylated dolichol derivative. In eukaryotes, these function as carriers of mono- and oligosaccharide residues in the glycosylation of lipids and proteins within intracellular membranes.","definition_xrefs":["ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phospholipid metabolic process","termid":"GO:0006644"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006629"}],"interesting_parent_ids":["GO:0006629","GO:0008150"],"is_obsolete":false,"name":"dolichyl diphosphate metabolic process","synonyms":[{"name":"dolichyl diphosphate metabolism","type":"exact"}],"termid":"GO:0046465"}


id: PBO:0053229
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"leucine rich repeat containing G protein-coupled receptor 5","termid":"PBO:0053229"}


id: GO:0004897
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Combining with ciliary neurotrophic factor (CNTF) and transmitting the signal from one side of the membrane to the other to initiate a change in cell activity.","definition_xrefs":["GOC:signaling","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cytokine receptor activity","termid":"GO:0004896"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0038023"}],"interesting_parent_ids":["GO:0003674","GO:0038023"],"is_obsolete":false,"name":"ciliary neurotrophic factor receptor activity","synonyms":[{"name":"CNTF receptor activity","type":"exact"},{"name":"gp130","type":"related"}],"termid":"GO:0004897"}


id: PBO:0039991
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ADP ribosylation factor like GTPase 6 interacting protein 5","termid":"PBO:0039991"}


id: PBO:0018136
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"phosphoprotein phosphatase involved in unfolded protein response (predicted)","termid":"PBO:0018136"}


id: PBO:0089485
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protein-DNA covalent cross-linking repair","termid":"PBO:0089485"}


id: GO:0019441
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of tryptophan into other compounds, including kynurenine.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"tryptophan catabolic process","termid":"GO:0006569"},{"relation_name":"is_a","term_name":"kynurenine metabolic process","termid":"GO:0070189"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0044248"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006520"}],"interesting_parent_ids":["GO:0006520","GO:0044248","GO:0044281","GO:0008150"],"is_obsolete":false,"name":"tryptophan catabolic process to kynurenine","secondary_identifiers":["MetaCyc:TRPKYNCAT-PWY"],"synonyms":[{"name":"tryptophan breakdown to kynurenine","type":"exact"},{"name":"tryptophan degradation to kynurenine","type":"exact"}],"termid":"GO:0019441"}


id: GO:0097007
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: (EE)-geranyllinalool + NADPH + O2 = 4,8,12-trimethyl-1,3,7,11-tridecatetraene + NADP+ + 2 H2O. It is unknown whether this reaction proceeds by the direct release of the 4-carbon compound but-1-en-3-one, or whether the substrate is first degraded to C18-farnesylacetone and then cleaved to produce 4,8,12-trimethyl-1,3,7,11-tridecatetraene (TMTT) and acetone.","definition_xrefs":["GOC:kad","MetaCyc:RXN-8620","PMID:21088219"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen","termid":"GO:0016709"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003824","GO:0016491","GO:0003674"],"is_obsolete":false,"name":"4,8,12-trimethyltrideca-1,3,7,11-tetraene synthase activity","secondary_identifiers":["RHEA:13545"],"synonyms":[{"name":"4,8,12-trimethyl-1,3,7,11-tridecatetraene synthase activity","type":"exact"},{"name":"TMTT synthase activity","type":"exact"}],"termid":"GO:0097007"}


id: GO:1905359
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process in which a protein is transported to, or maintained in, a location within a meiotic spindle.","definition_xrefs":["GO_REF:0000087","GOC:TermGenie","PMID:26696398"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein localization to microtubule cytoskeleton","termid":"GO:0072698"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0051179"],"is_obsolete":false,"name":"protein localization to meiotic spindle","synonyms":[{"name":"protein localisation to meiotic spindle","type":"exact"}],"termid":"GO:1905359"}


id: GO:0008233
data:
  {"annotated_genes":["SJAG_00720","SJAG_01528","SJAG_02033","SJAG_02341","SJAG_04215","SJAG_02502","SJAG_00479","SJAG_04514","SJAG_04497","SJAG_03258","SJAG_04969","SJAG_03420","SJAG_00784","SJAG_00644","SJAG_03396","SJAG_00969","SJAG_03393","SJAG_02565","SJAG_01838","SJAG_04641","SJAG_00737","SJAG_01312","SJAG_02900","SJAG_00125","SJAG_00181","SJAG_03009","SJAG_00254","SJAG_02117","SJAG_00778","SJAG_02562","SJAG_04583","SJAG_00128","SJAG_04229","SJAG_04858","SJAG_02432","SJAG_03744","SJAG_00730","SJAG_01014","SJAG_05351","SJAG_02542","SJAG_03292","SJAG_01542","SJAG_03648","SJAG_04994","SJAG_02809","SJAG_01136","SJAG_04533","SJAG_03686","SJAG_03121","SJAG_01481","SJAG_00546","SJAG_00109","SJAG_04888","SJAG_05316","SJAG_00984","SJAG_04651","SJAG_00776","SJAG_04103","SJAG_00135","SJAG_01004","SJAG_16454","SJAG_02419","SJAG_03752","SJAG_03316","SJAG_02774","SJAG_04398","SJAG_02776","SJAG_00662","SJAG_00966","SJAG_06636","SJAG_01968","SJAG_04357","SJAG_04928","SJAG_02214","SJAG_05286","SJAG_01283","SJAG_00451","SJAG_01768","SJAG_00762","SJAG_03151","SJAG_00573","SJAG_01868","SJAG_03407","SJAG_00742","SJAG_02244","SJAG_03586","SJAG_03261","SJAG_00846","SJAG_02397","SJAG_05977","SJAG_00406","SJAG_01285","SJAG_00975","SJAG_02503","SJAG_00795","SJAG_03910","SJAG_03147","SJAG_01816","SJAG_00087","SJAG_04541","SJAG_01612","SJAG_01321","SJAG_03429","SJAG_05278","SJAG_04306","SJAG_02260","SJAG_03299","SJAG_01088","SJAG_00764","SJAG_04538","SJAG_03022","SJAG_03763","SJAG_01896","SJAG_03672","SJAG_00808","SJAG_01430","SJAG_04785","SJAG_04819","SJAG_01179","SJAG_01281"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[84741,94906],"is_not":false,"summary":null,"term":"GO:0008233"},{"annotations":[90296],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0042500"},{"annotations":[93915,60089,70232,71800,72912,78480,75219],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004190"},{"annotations":[72286,77095,106243],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004176"},{"annotations":[73932],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0008798"},{"annotations":[72782],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004180"},{"annotations":[89728,73880,84239,100005,84116,100997,106934,93539,75551,76408,106993,89009,75928,109970,106377,110314,108810,77082,101161,111079,109484,75597,110382],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004843"},{"annotations":[73654,112650,87256],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004197"},{"annotations":[100651,104297],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0008234"},{"annotations":[71223,75357,105599,77710,90860],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0019784"},{"annotations":[85959,70173],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0016929"},{"annotations":[105961,71495,95569],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0101005"},{"annotations":[70381],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0008239"},{"annotations":[110693,109804,111080,88950,91778,95223,84260,106393,106995,97326,112903,92008,106633],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004175"},{"annotations":[93883,94699],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0036374"},{"annotations":[87842,83210,87036,99112,109133],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0003923"},{"annotations":[98689,105318],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004239"},{"annotations":[84117,106935],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1990380"},{"annotations":[77864,92087],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0061578"},{"annotations":[84240,111081,95339,101162,92088,110316,109971,87276,100006,106996,108811,89729,90861,110383,100998,105600,91944],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0140492"},{"annotations":[84247,83999,93365,72755,73866,98691,88994,109622],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0070006"},{"annotations":[62078,90054],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004181"},{"annotations":[92286,97687],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0070573"},{"annotations":[77025,103403,93824,111767,76480,100946,113759,70148,70240,75826,74310,76366,75098,104490,92863,77099],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004222"},{"annotations":[109385,111324],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0008235"},{"annotations":[93540,105962,75356,102320,110305,95570,109810,94314],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0008237"},{"annotations":[75613,74901,78061],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004185"},{"annotations":[74881,89749,104491,73913,74356,76386,99228,78191,88870,99222,75354,103404,96754,87243,113473],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004252"},{"annotations":[84863],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0008236"},{"annotations":[74251,101488],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0070139"},{"annotations":[105980,89595,73935,93229],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004298"},{"annotations":[73627],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0008240"}]},"cv_name":"molecular_function","definition":"Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid.","definition_xrefs":["GOC:jl","ISBN:0815332181"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hydrolase activity","termid":"GO:0016787"},{"relation_name":"is_a","term_name":"catalytic activity, acting on a protein","termid":"GO:0140096"}],"gene_count":120,"genes_by_uniquename":{"SJAG_00087":null,"SJAG_00109":null,"SJAG_00125":null,"SJAG_00128":null,"SJAG_00135":null,"SJAG_00181":null,"SJAG_00254":null,"SJAG_00406":null,"SJAG_00451":null,"SJAG_00479":null,"SJAG_00546":null,"SJAG_00573":null,"SJAG_00644":null,"SJAG_00662":null,"SJAG_00720":null,"SJAG_00730":null,"SJAG_00737":null,"SJAG_00742":null,"SJAG_00762":null,"SJAG_00764":null,"SJAG_00776":null,"SJAG_00778":null,"SJAG_00784":null,"SJAG_00795":null,"SJAG_00808":null,"SJAG_00846":null,"SJAG_00966":null,"SJAG_00969":null,"SJAG_00975":null,"SJAG_00984":null,"SJAG_01004":null,"SJAG_01014":null,"SJAG_01088":null,"SJAG_01136":null,"SJAG_01179":null,"SJAG_01281":null,"SJAG_01283":null,"SJAG_01285":null,"SJAG_01312":null,"SJAG_01321":null,"SJAG_01430":null,"SJAG_01481":null,"SJAG_01528":null,"SJAG_01542":null,"SJAG_01612":null,"SJAG_01768":null,"SJAG_01816":null,"SJAG_01838":null,"SJAG_01868":null,"SJAG_01896":null,"SJAG_01968":null,"SJAG_02033":null,"SJAG_02117":null,"SJAG_02214":null,"SJAG_02244":null,"SJAG_02260":null,"SJAG_02341":null,"SJAG_02397":null,"SJAG_02419":null,"SJAG_02432":null,"SJAG_02502":null,"SJAG_02503":null,"SJAG_02542":null,"SJAG_02562":null,"SJAG_02565":null,"SJAG_02774":null,"SJAG_02776":null,"SJAG_02809":null,"SJAG_02900":null,"SJAG_03009":null,"SJAG_03022":null,"SJAG_03121":null,"SJAG_03147":null,"SJAG_03151":null,"SJAG_03258":null,"SJAG_03261":null,"SJAG_03292":null,"SJAG_03299":null,"SJAG_03316":null,"SJAG_03393":null,"SJAG_03396":null,"SJAG_03407":null,"SJAG_03420":null,"SJAG_03429":null,"SJAG_03586":null,"SJAG_03648":null,"SJAG_03672":null,"SJAG_03686":null,"SJAG_03744":null,"SJAG_03752":null,"SJAG_03763":null,"SJAG_03910":null,"SJAG_04103":null,"SJAG_04215":null,"SJAG_04229":null,"SJAG_04306":null,"SJAG_04357":null,"SJAG_04398":null,"SJAG_04497":null,"SJAG_04514":null,"SJAG_04533":null,"SJAG_04538":null,"SJAG_04541":null,"SJAG_04583":null,"SJAG_04641":null,"SJAG_04651":null,"SJAG_04785":null,"SJAG_04819":null,"SJAG_04858":null,"SJAG_04888":null,"SJAG_04928":null,"SJAG_04969":null,"SJAG_04994":null,"SJAG_05278":null,"SJAG_05286":null,"SJAG_05316":null,"SJAG_05351":null,"SJAG_05977":null,"SJAG_06636":null,"SJAG_16454":null},"genotype_count":0,"in_subsets":["mf_goslim_japonicus"],"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0140096"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0140096","GO:0016787"],"is_obsolete":false,"name":"peptidase activity","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000043":null,"GO_REF:0000107":null,"PMID:21873635":null},"secondary_identifiers":["Reactome:R-HSA-5655483","GO:0070011","Reactome:R-HSA-3139027","Reactome:R-HSA-4167501","Reactome:R-HSA-5685902","Reactome:R-HSA-6803060","GO:0070010","Reactome:R-HSA-3000243","Reactome:R-HSA-3065959","Reactome:R-HSA-205112","Reactome:R-HSA-5684864","Reactome:R-HSA-3000263","EC:3.4.-.-","Reactome:R-HSA-376149","Reactome:R-HSA-448678","Reactome:R-HSA-3065958"],"synonyms":[{"name":"hydrolase, acting on peptide bonds","type":"exact"},{"name":"peptidase activity, acting on D-amino acid peptides","type":"narrow"},{"name":"peptidase activity, acting on L-amino acid peptides","type":"narrow"},{"name":"peptide hydrolase activity","type":"exact"},{"name":"protease activity","type":"exact"},{"name":"proteinase activity","type":"narrow"}],"termid":"GO:0008233","terms_by_termid":{"GO:0003923":null,"GO:0004175":null,"GO:0004176":null,"GO:0004180":null,"GO:0004181":null,"GO:0004185":null,"GO:0004190":null,"GO:0004197":null,"GO:0004222":null,"GO:0004239":null,"GO:0004252":null,"GO:0004298":null,"GO:0004843":null,"GO:0008233":null,"GO:0008234":null,"GO:0008235":null,"GO:0008236":null,"GO:0008237":null,"GO:0008239":null,"GO:0008240":null,"GO:0008798":null,"GO:0016929":null,"GO:0019784":null,"GO:0036374":null,"GO:0042500":null,"GO:0061578":null,"GO:0070006":null,"GO:0070139":null,"GO:0070573":null,"GO:0101005":null,"GO:0140492":null,"GO:1990380":null}}


id: PBO:0030817
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_citrate_(Si)-synthase_activity","termid":"PBO:0030817"}


id: GO:0016929
data:
  {"annotated_genes":["SJAG_02214","SJAG_16454"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[70173,85959],"is_not":false,"summary":null,"term":"GO:0016929"}]},"cv_name":"molecular_function","definition":"An thiol-dependent isopeptidase activity that cleaves SUMO from a target protein to which it is conjugated.","definition_xrefs":["PMID:10094048","PMID:11265250","PMID:23746258","GOC:rn","PMID:11031248"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cysteine-type peptidase activity","termid":"GO:0008234"},{"relation_name":"is_a","term_name":"ubiquitin-like protein peptidase activity","termid":"GO:0019783"}],"gene_count":2,"genes_by_uniquename":{"SJAG_02214":null,"SJAG_16454":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0140096"},{"rel_name":"is_a","termid":"GO:0008233"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016787"}],"interesting_parent_ids":["GO:0008233","GO:0140096","GO:0003674","GO:0003824","GO:0016787"],"is_obsolete":false,"name":"deSUMOylase activity","references_by_uniquename":{"GO_REF:0000107":null,"PMID:21873635":null},"secondary_identifiers":["GO:0070140"],"synonyms":[{"name":"SUMO-specific isopeptidase activity","type":"exact"},{"name":"SUMO-specific protease activity","type":"exact"},{"name":"SUSP","type":"narrow"},{"name":"ULP","type":"narrow"}],"termid":"GO:0016929","terms_by_termid":{"GO:0016929":null}}


id: PATO:0002236
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"Shape quality inhering in a bearer by virtue of the bearer's being shaped like a wing.","direct_ancestors":[{"relation_name":"is_a","term_name":"2-D shape","termid":"PATO:0002006"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"aliform","synonyms":[{"name":"wing-shaped","type":"exact"}],"termid":"PATO:0002236"}


id: PR:O74783
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"An F-box/LRR-repeat protein 14 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO03350","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SCF E3 ubiquitin ligase complex F-box protein pof2 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC25B2.11","secondary_identifiers":["UniProtKB:O74783"],"synonyms":[{"name":"F-box and leucine-rich repeat protein pof2 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"F-box protein pof2 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"F-box/LRR-repeat protein pof2 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-FBXL14","type":"exact"}],"termid":"PR:O74783"}


id: GO:0016357
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. (Was not defined before being made obsolete).","definition_xrefs":["GOC:go_curators"],"gene_count":0,"genotype_count":0,"name":"obsolete pyrethroid susceptibility/resistance (obsolete GO:0016357)","synonyms":[{"name":"pyrethroid susceptibility/resistance","type":"exact"}],"termid":"GO:0016357"}


id: PR:Q11119
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A ubiquitin carboxyl-terminal hydrolase 5 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ubiquitin carboxyl-terminal hydrolase 14 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC6B1.06c","secondary_identifiers":["UniProtKB:Q11119"],"synonyms":[{"name":"SPBC6B1.06c","type":"related"},{"name":"Spom972h-USP5","type":"exact"},{"name":"UBA domain-containing protein 2 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"deubiquitinating enzyme 14 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"ubiquitin thioesterase 14 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"ubiquitin-specific-processing protease 14 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"ucp2","type":"related"}],"termid":"PR:Q11119"}


id: GO:0140751
data:
  {"annotated_genes":["SJAG_04755","SJAG_05313","SJAG_03982"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[83922,110166],"is_not":false,"summary":null,"term":"GO:0140751"},{"annotations":[108490],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0140750"}]},"cv_name":"molecular_function","definition":"A chromatin remodeler activity that slides core histone octamers along chromosomal DNA.","definition_xrefs":["PMID:10466730"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ATP-dependent chromatin remodeler activity","termid":"GO:0140658"}],"gene_count":3,"genes_by_uniquename":{"SJAG_03982":null,"SJAG_04755":null,"SJAG_05313":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0140097"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0140097","GO:0003824"],"is_obsolete":false,"name":"histone octamer slider activity","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"histone octamer sliding activity","type":"exact"}],"termid":"GO:0140751","terms_by_termid":{"GO:0140750":null,"GO:0140751":null}}


id: _global:affected_by
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD_extension_relations","definition":"Identifies a gene product that influences the modification, where the experiment does not distinguish between direct action (e.g. adds or removes a modification) and indirect effects.","definition_xrefs":["PomBase:mah"],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"affected_by","termid":"_global:affected_by"}


id: PBO:0048139
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"FXYD domain containing ion transport regulator 3","termid":"PBO:0048139"}


id: PBO:0028764
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abolished_protein_localization_to_nuclear_periphery_during_cellular_response_to_heat","termid":"PBO:0028764"}


id: MOD:00748
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively results from forming an adduct with a compound containing a pterin group.","definition_xrefs":["PubMed:18688235"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein modification categorized by chemical process","termid":"MOD:01156"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pterin modified residue","synonyms":[{"name":"PterRes","type":"exact"}],"termid":"MOD:00748"}


id: CHEBI:23414
data:
  {"annotation_feature_type":"gene","cv_name":"chebi_ontology","definition":"A metal sulfate compound having copper(2+) as the counterion.","direct_ancestors":[{"relation_name":"is_a","term_name":"chemical entity","termid":"CHEBI:24431"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"copper(2+) sulfate","termid":"CHEBI:23414"}


id: PBO:0001702
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"F-box protein Pof5","termid":"PBO:0001702"}


id: GO:0033535
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving ajugose, the hexasaccharide beta-D-fructofuranosyl alpha-D-galactopyranosyl-(1->6)-alpha-D-galactopyranosyl-(1->6)-alpha-D-galactopyranosyl-(1->6)-alpha-D-galactopyranosyl-(1->6)-alpha-D-glucopyranoside.","definition_xrefs":["GOC:mah","MetaCyc:CPD-8066"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oligosaccharide metabolic process","termid":"GO:0009311"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005975"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0005975","GO:0008150"],"is_obsolete":false,"name":"ajugose metabolic process","synonyms":[{"name":"ajugose metabolism","type":"exact"}],"termid":"GO:0033535"}


id: GO:0090112
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which COPII vesicle coat proteins are disassembled, and released.","definition_xrefs":["GOC:ascb_2009","GOC:dph","GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"vesicle uncoating","termid":"GO:0072319"},{"relation_name":"part_of","term_name":"endoplasmic reticulum to Golgi vesicle-mediated transport","termid":"GO:0006888"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0006810"},{"rel_name":"part_of","termid":"GO:0016192"}],"interesting_parent_ids":["GO:0016192","GO:0006810","GO:0008150"],"is_obsolete":false,"name":"COPII vesicle uncoating","termid":"GO:0090112"}


id: PBO:0072400
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein S27 pseudogene 5","termid":"PBO:0072400"}


id: FYPO:0001437
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A phenotype in which vegetative cell population growth is normal (i.e. indistinguishable from wild type) in a medium containing antimycin A.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal vegetative cell population growth","termid":"FYPO:0001357"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0002060"},{"rel_name":"is_a","termid":"FYPO:0000139"},{"rel_name":"is_a","termid":"FYPO:0002057"},{"rel_name":"is_a","termid":"FYPO:0002058"},{"rel_name":"is_a","termid":"FYPO:0000003"},{"rel_name":"is_a","termid":"FYPO:0000257"}],"interesting_parent_ids":["FYPO:0000139","FYPO:0002058","FYPO:0000257","FYPO:0002060","FYPO:0000003","FYPO:0002057"],"is_obsolete":false,"name":"normal growth on antimycin A","synonyms":[{"name":"normal cell population growth in presence of antimycin A","type":"exact"},{"name":"normal cell population growth on antimycin A","type":"exact"},{"name":"normal cellular response to antimycin A","type":"related"},{"name":"normal vegetative cell population growth on antimycin A","type":"exact"}],"termid":"FYPO:0001437"}


id: PBO:0039827
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"arginase 1","termid":"PBO:0039827"}


id: PBO:0051721
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"INSM transcriptional repressor 2","termid":"PBO:0051721"}


id: PBO:0078658
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-Lys (anticodon CTT) 11-1","termid":"PBO:0078658"}


id: PATO:0002053
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A quality inhering in a bearer by virtue of the bearer's being flattened along dorso-ventral axis.","definition_xrefs":["PATOC:MSP"],"direct_ancestors":[{"relation_name":"is_a","term_name":"flattened","termid":"PATO:0002254"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dorso-ventrally flattened","termid":"PATO:0002053"}


id: MOD:00468
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"modification from Unimod Isotopic label","definition_xrefs":["Unimod:90"],"direct_ancestors":[{"relation_name":"is_a","term_name":"isotope tagged reagent derivatized residue","termid":"MOD:01426"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ESP-Tag light d0","synonyms":[{"name":"ESP","type":"related"},{"name":"ESP-Tag light d0","type":"related"}],"termid":"MOD:00468"}


id: PBO:0054107
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1472","termid":"PBO:0054107"}


id: PR:O13742
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- vph1 gene.","definition_xrefs":["PRO:DNx","UniProtKB:O13742"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"V-type proton ATPase subunit a (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC16E8.07c","synonyms":[{"name":"Spom972h-vph1","type":"exact"},{"name":"V-ATPase a subunit (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"vacuolar ATPase 91 kDa subunit (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"vacuolar proton pump a subunit (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"vacuolar proton translocating ATPase subunit a (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:O13742"}


id: PBO:0073687
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SIVA1 apoptosis inducing factor","termid":"PBO:0073687"}


id: MOD:01343
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"OBSOLETE because redundant and identical to MOD:00686. Remap to MOD:00686.","definition_xrefs":["PubMed:12148805","Unimod:162"],"gene_count":0,"genotype_count":0,"name":"OBSOLETE MOD:01343 selenium substitution for sulfur - site C (obsolete MOD:01343)","synonyms":[{"name":"Delta:S(-1)Se(1)","type":"related"},{"name":"Selenium replaces sulphur","type":"related"}],"termid":"MOD:01343"}


id: GO:0090168
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The reformation of the Golgi following its breakdown and partitioning contributing to Golgi inheritance.","definition_xrefs":["GOC:tb","GOC:dph","GOC:ascb_2009"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Golgi organization","termid":"GO:0007030"},{"relation_name":"is_a","term_name":"cellular component assembly","termid":"GO:0022607"},{"relation_name":"part_of","term_name":"Golgi inheritance","termid":"GO:0048313"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0044085"}],"interesting_parent_ids":["GO:0008150","GO:0044085"],"is_obsolete":false,"name":"Golgi reassembly","synonyms":[{"name":"Golgi apparatus reassembly","type":"exact"}],"termid":"GO:0090168"}


id: PR:O74409
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A uricase that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO04855","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uricase (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC1223.09","secondary_identifiers":["UniProtKB:O74409"],"synonyms":[{"name":"Spom972h-Uox","type":"exact"},{"name":"urate oxidase (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:O74409"}


id: PBO:0029012
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_protein_localization_to_chromosome_during_vegetative_growth","termid":"PBO:0029012"}


id: GO:0019794
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The chemical reactions and pathways involving any amino acid not found, or rarely found, in peptide linkage in proteins.","definition_xrefs":["GOC:jl","ISBN:0198506732"],"gene_count":0,"genotype_count":0,"name":"obsolete nonprotein amino acid metabolic process (obsolete GO:0019794)","synonyms":[{"name":"nonprotein amino acid metabolic process","type":"exact"},{"name":"nonprotein amino acid metabolism","type":"exact"}],"termid":"GO:0019794"}


id: PBO:0081112
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger AN1-type containing 2B","termid":"PBO:0081112"}


id: PBO:0048958
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glycoprotein Ib platelet subunit beta","termid":"PBO:0048958"}


id: PBO:0057605
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 941-2","termid":"PBO:0057605"}


id: GO:1990323
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A collagen homotrimer of alpha1(XXIV) chains; type XXIV collagen triple helices may participate in regulating type I collagen fibrillogenesis at specific anatomical locations during fetal development.","definition_xrefs":["GOC:bhm","PMID:17876790"],"direct_ancestors":[{"relation_name":"is_a","term_name":"fibrillar collagen trimer","termid":"GO:0005583"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0005575","GO:0032991"],"is_obsolete":false,"name":"collagen type XXIV trimer","termid":"GO:1990323"}


id: GO:0005624
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"OBSOLETE. That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes.","definition_xrefs":["GOC:ma"],"gene_count":0,"genotype_count":0,"name":"obsolete membrane fraction (obsolete GO:0005624)","synonyms":[{"name":"membrane fraction","type":"exact"}],"termid":"GO:0005624"}


id: PBO:0063884
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"phosphatidylinositol glycan anchor biosynthesis class N","termid":"PBO:0063884"}


id: GO:2000325
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that modulates the frequency, rate or extent of ligand-dependent nuclear receptor transcription coactivator activity.","definition_xrefs":["GOC:BHF"],"gene_count":0,"genotype_count":0,"name":"obsolete regulation of nuclear receptor coactivator activity (obsolete GO:2000325)","synonyms":[{"name":"regulation of ligand-dependent nuclear receptor transcription co-activator activity","type":"exact"},{"name":"regulation of ligand-dependent nuclear receptor transcription coactivator activity","type":"exact"},{"name":"regulation of nuclear receptor transcription coactivator activity","type":"exact"}],"termid":"GO:2000325"}


id: GO:0006696
data:
  {"annotated_genes":["SJAG_04059","SJAG_00453","SJAG_03024","SJAG_02068","SJAG_03509","SJAG_00770","SJAG_03715","SJAG_04018","SJAG_03352","SJAG_03531","SJAG_02982","SJAG_02719","SJAG_01474","SJAG_00717","SJAG_03018","SJAG_00624","SJAG_03349","SJAG_00413","SJAG_03249","SJAG_03929","SJAG_03750","SJAG_04217","SJAG_04790","SJAG_04049","SJAG_02044","SJAG_04499","SJAG_01307","SJAG_02855","SJAG_04270","SJAG_04810","SJAG_00580","SJAG_02104","SJAG_00158","SJAG_04865","SJAG_03598","SJAG_03235","SJAG_00370"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[70290,71112,71692,72924,73710,73918,75350,75420,75543,76234,78565,78697,78758,78824,84223,84499,85366,87127,90028,90215,95065,98755,99400,102868,103048,103177,104536,104769,105357,110226,110374,111658,113891],"is_not":false,"summary":null,"term":"GO:0006696"},{"annotations":[89479],"is_not":false,"rel_names":["negatively_regulates","regulates"],"summary":null,"term":"GO:0010895"},{"annotations":[105132],"is_not":false,"rel_names":["regulates","positively_regulates"],"summary":null,"term":"GO:0070452"},{"annotations":[84308,101196],"is_not":false,"rel_names":["regulates"],"summary":null,"term":"GO:0032443"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of ergosterol, (22E)-ergosta-5,7,22-trien-3-beta-ol, a sterol found in ergot, yeast and moulds.","definition_xrefs":["ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ergosterol metabolic process","termid":"GO:0008204"},{"relation_name":"is_a","term_name":"sterol biosynthetic process","termid":"GO:0016126"},{"relation_name":"is_a","term_name":"phytosteroid biosynthetic process","termid":"GO:0016129"},{"relation_name":"is_a","term_name":"cellular lipid biosynthetic process","termid":"GO:0097384"},{"relation_name":"is_a","term_name":"secondary alcohol biosynthetic process","termid":"GO:1902653"}],"gene_count":37,"genes_by_uniquename":{"SJAG_00158":null,"SJAG_00370":null,"SJAG_00413":null,"SJAG_00453":null,"SJAG_00580":null,"SJAG_00624":null,"SJAG_00717":null,"SJAG_00770":null,"SJAG_01307":null,"SJAG_01474":null,"SJAG_02044":null,"SJAG_02068":null,"SJAG_02104":null,"SJAG_02719":null,"SJAG_02855":null,"SJAG_02982":null,"SJAG_03018":null,"SJAG_03024":null,"SJAG_03235":null,"SJAG_03249":null,"SJAG_03349":null,"SJAG_03352":null,"SJAG_03509":null,"SJAG_03531":null,"SJAG_03598":null,"SJAG_03715":null,"SJAG_03750":null,"SJAG_03929":null,"SJAG_04018":null,"SJAG_04049":null,"SJAG_04059":null,"SJAG_04217":null,"SJAG_04270":null,"SJAG_04499":null,"SJAG_04790":null,"SJAG_04810":null,"SJAG_04865":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006629"}],"interesting_parent_ids":["GO:0006629","GO:0044281","GO:0008150"],"is_obsolete":false,"name":"ergosterol biosynthetic process","references_by_uniquename":{"GO_REF:0000107":null,"PMID:21873635":null},"synonyms":[{"name":"ergosterol anabolism","type":"exact"},{"name":"ergosterol biosynthesis","type":"exact"},{"name":"ergosterol formation","type":"exact"},{"name":"ergosterol synthesis","type":"exact"}],"termid":"GO:0006696","terms_by_termid":{"GO:0006696":null,"GO:0010895":null,"GO:0032443":null,"GO:0070452":null}}


id: SO:0002346
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"Plastid rRNA is an RNA component of the small or large subunits of plastid (such as chloroplast) ribosomes.","definition_xrefs":["PMID:3044395"],"direct_ancestors":[{"relation_name":"is_a","term_name":"rRNA","termid":"SO:0000252"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"plastid_rRNA","synonyms":[{"name":"plastid rRNA","type":"exact"}],"termid":"SO:0002346"}


id: SO:0001921
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A contig of mitochondria derived sequences.","definition_xrefs":["GMOD:ea"],"direct_ancestors":[{"relation_name":"has_origin","term_name":"mitochondrial_sequence","termid":"SO:0000737"},{"relation_name":"is_a","term_name":"contig","termid":"SO:0000149"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial_contig","synonyms":[{"name":"mitochondrial contig","type":"exact"}],"termid":"SO:0001921"}


id: GO:0002890
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate, or extent of an immunoglobulin mediated immune response.","definition_xrefs":["GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of B cell mediated immunity","termid":"GO:0002713"},{"relation_name":"is_a","term_name":"regulation of immunoglobulin mediated immune response","termid":"GO:0002889"},{"relation_name":"negatively_regulates","term_name":"immunoglobulin mediated immune response","termid":"GO:0016064"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of immunoglobulin mediated immune response","synonyms":[{"name":"down regulation of immunoglobulin mediated immune response","type":"exact"},{"name":"down-regulation of immunoglobulin mediated immune response","type":"exact"},{"name":"downregulation of immunoglobulin mediated immune response","type":"exact"},{"name":"inhibition of immunoglobulin mediated immune response","type":"narrow"}],"termid":"GO:0002890"}


id: PBO:0067267
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 341, pseudogene","termid":"PBO:0067267"}


id: PBO:0031842
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_endoplasmic_reticulum_morphology","termid":"PBO:0031842"}


id: PBO:0083147
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Dubious open reading frame; unlikely to encode a functional protein, based on available experimental and comparative sequence data; almost completely overlaps ORF GND1/YHR183W","termid":"PBO:0083147"}


id: PBO:0004423
data:
  {"annotation_feature_type":"gene","cv_name":"gene_ex","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transcriptionally regulates ace2 target genes","termid":"PBO:0004423"}


id: GO:0009745
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The series of molecular signals mediated by the detection of sucrose.","definition_xrefs":["GOC:sm"],"direct_ancestors":[{"relation_name":"is_a","term_name":"sugar mediated signaling pathway","termid":"GO:0010182"},{"relation_name":"part_of","term_name":"cellular response to sucrose stimulus","termid":"GO:0071329"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"sucrose mediated signaling","synonyms":[{"name":"sucrose mediated signalling","type":"exact"}],"termid":"GO:0009745"}


id: GO:0070631
data:
  {"annotated_genes":["SJAG_01422","SJAG_03200","SJAG_01460","SJAG_04558","SJAG_02332","SJAG_05196"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[96057,85827,98237,106669,108045,98856],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0140480"}]},"cv_name":"biological_process","definition":"Any process in which a spindle pole body is transported to, or maintained in, a specific location. A spindle pole body is a type of microtubule organizing center found in fungal cells.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular localization","termid":"GO:0051641"},{"relation_name":"is_a","term_name":"microtubule organizing center localization","termid":"GO:0061842"}],"gene_count":6,"genes_by_uniquename":{"SJAG_01422":null,"SJAG_01460":null,"SJAG_02332":null,"SJAG_03200":null,"SJAG_04558":null,"SJAG_05196":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0051179"}],"interesting_parent_ids":["GO:0051179","GO:0008150"],"is_obsolete":false,"name":"spindle pole body localization","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["GO:0071790","GO:1990944"],"synonyms":[{"name":"maintenance of spindle pole body localization","type":"narrow"},{"name":"spindle pole body localisation","type":"exact"}],"termid":"GO:0070631","terms_by_termid":{"GO:0140480":null}}


id: GO:0004783
data:
  {"annotated_genes":["SJAG_01693","SJAG_05027"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[77152,83542],"is_not":false,"summary":null,"term":"GO:0004783"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: hydrogen sulfide + 3 NADP+ + 3 H2O = sulfite + 3 NADPH + 3 H+.","definition_xrefs":["RHEA:13801"],"direct_ancestors":[{"relation_name":"is_a","term_name":"sulfite reductase activity","termid":"GO:0016002"},{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on a sulfur group of donors, NAD(P) as acceptor","termid":"GO:0016668"}],"gene_count":2,"genes_by_uniquename":{"SJAG_01693":null,"SJAG_05027":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0003674","GO:0016491","GO:0003824"],"is_obsolete":false,"name":"sulfite reductase (NADPH) activity","references_by_uniquename":{"GO_REF:0000107":null,"PMID:21873635":null},"secondary_identifiers":["EC:1.8.1.2","MetaCyc:SULFITE-REDUCT-RXN"],"synonyms":[{"name":"H2S-NADP oxidoreductase activity","type":"related"},{"name":"NADPH-dependent sulfite reductase activity","type":"related"},{"name":"NADPH-sulfite reductase activity","type":"related"},{"name":"NADPH:sulfite reductase flavoprotein","type":"related"},{"name":"hydrogen-sulfide:NADP+ oxidoreductase activity","type":"related"},{"name":"sulfite (reduced nicotinamide adenine dinucleotide phosphate) reductase activity","type":"related"},{"name":"sulphite reductase (NADPH) activity","type":"exact"}],"termid":"GO:0004783","terms_by_termid":{"GO:0004783":null}}


id: PBO:0058285
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 4661","termid":"PBO:0058285"}


id: MOD:02010
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively replaces a residue amino group with a stearoylamino group.","direct_ancestors":[{"relation_name":"is_a","term_name":"N-acylated residue","termid":"MOD:00670"},{"relation_name":"is_a","term_name":"stearoylated residue","termid":"MOD:02001"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:00649"}],"interesting_parent_ids":["MOD:00649"],"is_obsolete":false,"name":"N-stearoylated residue","termid":"MOD:02010"}


id: PBO:0085301
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Pheromone-responsive MAPK scaffold protein; couples activation of the G-protein-coupled pheromone receptor to MAPK activation; intramolecular interaction of PH and VWA domains blocks activation of assembled signaling cascade components (Ste11p, Ste7p and Fus3p) under basal conditions; Gbeta-gamma (Ste4p-Ste18p)-dependent docking at the plasma membrane and binding of PI(4,5)P2 by the PH domain relieves autoinhibition, resulting in pheromone-dependent pathway activation","termid":"PBO:0085301"}


id: PBO:0004509
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"YjgF family protein Mmf1","termid":"PBO:0004509"}


id: PBO:0058950
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MKKS centrosomal shuttling protein","termid":"PBO:0058950"}


id: PBO:0039420
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"angiopoietin 4","termid":"PBO:0039420"}


id: PBO:0085393
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Plasma membrane multidrug transporter; member of the major facilitator superfamily; acts as an extrusion permease; partial multicopy suppressor of gal11 mutations","termid":"PBO:0085393"}


id: PBO:0042825
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"carboxylesterase 4A","termid":"PBO:0042825"}


id: PBO:0052610
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"KRAB box domain containing 1","termid":"PBO:0052610"}


id: PBO:0000279
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA pseudouridylate synthase (predicted)","termid":"PBO:0000279"}


id: PBO:0046135
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"eukaryotic translation initiation factor 5A","termid":"PBO:0046135"}


id: PBO:0058398
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 4770","termid":"PBO:0058398"}


id: GO:0060877
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The pattern specification process that results in the subdivision of the otic epithelium in space to define an area or volume in which cells will differentiate to give rise to the semicircular canals.","definition_xrefs":["GOC:dph","GOC:tb","GOC:sdb_2009"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regionalization","termid":"GO:0003002"},{"relation_name":"part_of","term_name":"semicircular canal formation","termid":"GO:0060876"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regionalization involved in semicircular canal formation","termid":"GO:0060877"}


id: PBO:0040441
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ATPase phospholipid transporting 8B2","termid":"PBO:0040441"}


id: GO:0001689
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"OBSOLETE. (Was not defined before being made obsolete).","definition_xrefs":["GOC:jl"],"gene_count":0,"genotype_count":0,"name":"obsolete cytoplasmic dynein intermediate light chain (obsolete GO:0001689)","synonyms":[{"name":"cytoplasmic dynein intermediate light chain","type":"exact"}],"termid":"GO:0001689"}


id: PBO:0040605
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"BAGE family member 3","termid":"PBO:0040605"}


id: SO:0000802
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A multi-chromosome deficiency aberration generated by reassortment of other aberration components.","definition_xrefs":["FB:gm"],"direct_ancestors":[{"relation_name":"is_a","term_name":"assortment_derived_variation","termid":"SO:0001504"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"assortment_derived_deficiency","synonyms":[{"name":"assortment-derived deficiency","type":"exact"}],"termid":"SO:0000802"}


id: GO:0033893
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the endonucleolytic cleavage of poly(A) to fragments terminated by 3'-hydroxy and 5'-phosphate groups.","definition_xrefs":["EC:3.1.26.6"],"direct_ancestors":[{"relation_name":"is_a","term_name":"RNA endonuclease activity, producing 5'-phosphomonoesters","termid":"GO:0016891"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016788"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0140098"},{"rel_name":"is_a","termid":"GO:0016787"}],"interesting_parent_ids":["GO:0016787","GO:0016788","GO:0140098","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"ribonuclease IV activity","secondary_identifiers":["MetaCyc:3.1.26.6-RXN"],"synonyms":[{"name":"endoribonuclease IV activity","type":"related"}],"termid":"GO:0033893"}


id: GO:0004064
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: a phenyl acetate + H2O = a phenol + acetate.","definition_xrefs":["EC:3.1.1.2"],"direct_ancestors":[{"relation_name":"is_a","term_name":"carboxylic ester hydrolase activity","termid":"GO:0052689"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016788"},{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016788","GO:0016787","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"arylesterase activity","secondary_identifiers":["MetaCyc:ARYLESTERASE-RXN","UM-BBD_reactionID:r0757","RHEA:17309"],"synonyms":[{"name":"A-esterase activity","type":"broad"},{"name":"aromatic esterase","type":"narrow"},{"name":"aryl-ester hydrolase","type":"narrow"},{"name":"paraoxonase activity","type":"broad"}],"termid":"GO:0004064"}


id: PBO:0044791
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"defensin alpha 4","termid":"PBO:0044791"}


id: PBO:0054155
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1522","termid":"PBO:0054155"}


id: PBO:0086034
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein of unknown function, essential for stationary phase survival; not required for growth on nonfermentable carbon sources; possibly linked with vacuolar transport","termid":"PBO:0086034"}


id: MOD:01418
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-threonine residue to a methylated threonine, such as O-methyl-L-threonine.","definition_xrefs":["PubMed:18688235"],"direct_ancestors":[{"relation_name":"is_a","term_name":"methylated residue","termid":"MOD:00427"},{"relation_name":"is_a","term_name":"modified L-threonine residue","termid":"MOD:00917"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:00427"}],"interesting_parent_ids":["MOD:00427"],"is_obsolete":false,"name":"methylated threonine","synonyms":[{"name":"MeThr","type":"exact"}],"termid":"MOD:01418"}


id: GO:0052879
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: (8R,9Z,12Z)-8-hydroperoxyoctadeca-9,12-dienoate = (7S,8S,9Z,12Z)-7,8-dihydroxyoctadeca-9,12-dienoate.","definition_xrefs":["RHEA:25399"],"direct_ancestors":[{"relation_name":"is_a","term_name":"intramolecular hydroxytransferase activity","termid":"GO:0050486"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016853"}],"interesting_parent_ids":["GO:0003674","GO:0016853","GO:0003824"],"is_obsolete":false,"name":"9,12-octadecadienoate 8-hydroperoxide 8S-isomerase activity","secondary_identifiers":["EC:5.4.4.6","KEGG_REACTION:R07062","MetaCyc:RXN-12758"],"synonyms":[{"name":"(8R,9Z,12Z)-8-hydroperoxy-9,12-octadecadienoate mutase ((7S,8S,9Z,12Z)-5,8-dihydroxy-9,12-octadecadienoate-forming) activity","type":"related"},{"name":"8-hydroperoxide isomerase activity","type":"broad"},{"name":"linoleate diol synthase activity","type":"related"}],"termid":"GO:0052879"}


id: PBO:0089235
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial nuclease Lcl3, implicated in DNA repair","termid":"PBO:0089235"}


id: GO:0061377
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The progression of the mammary gland lobule over time, from its formation to the mature structure. A mammary gland lobule is a small rounded projection of the mammary gland.","definition_xrefs":["GOC:dph","GOC:yaf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"anatomical structure development","termid":"GO:0048856"},{"relation_name":"part_of","term_name":"mammary gland development","termid":"GO:0030879"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"mammary gland lobule development","termid":"GO:0061377"}


id: GO:1904443
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of thyroid gland epithelial cell proliferation.","definition_xrefs":["GO_REF:0000058","GOC:TermGenie","PMID:17646383"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of epithelial cell proliferation","termid":"GO:0050679"},{"relation_name":"is_a","term_name":"positive regulation of developmental process","termid":"GO:0051094"},{"relation_name":"is_a","term_name":"positive regulation of multicellular organismal process","termid":"GO:0051240"},{"relation_name":"is_a","term_name":"regulation of thyroid gland epithelial cell proliferation","termid":"GO:1904441"},{"relation_name":"positively_regulates","term_name":"thyroid gland epithelial cell proliferation","termid":"GO:1990789"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of thyroid gland epithelial cell proliferation","synonyms":[{"name":"activation of Hurthle cell proliferation","type":"narrow"},{"name":"activation of thyroid follicular cell proliferation","type":"narrow"},{"name":"activation of thyroid gland epithelial cell proliferation","type":"narrow"},{"name":"positive regulation of Hurthle cell proliferation","type":"narrow"},{"name":"positive regulation of thyroid follicular cell proliferation","type":"narrow"},{"name":"up regulation of Hurthle cell proliferation","type":"narrow"},{"name":"up regulation of thyroid follicular cell proliferation","type":"narrow"},{"name":"up regulation of thyroid gland epithelial cell proliferation","type":"exact"},{"name":"up-regulation of Hurthle cell proliferation","type":"narrow"},{"name":"up-regulation of thyroid follicular cell proliferation","type":"narrow"},{"name":"up-regulation of thyroid gland epithelial cell proliferation","type":"exact"},{"name":"upregulation of Hurthle cell proliferation","type":"narrow"},{"name":"upregulation of thyroid follicular cell proliferation","type":"narrow"},{"name":"upregulation of thyroid gland epithelial cell proliferation","type":"exact"}],"termid":"GO:1904443"}


id: PBO:0042028
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  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"coiled-coil domain containing 85C","termid":"PBO:0042028"}


id: PBO:0080173
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  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"voltage dependent anion channel 1 pseudogene 8","termid":"PBO:0080173"}


id: PBO:0005684
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  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"histone lysine methyltransferase Set7 (predicted)","termid":"PBO:0005684"}


id: GO:0102180
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id: GO:0050904
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  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The passage of a leukocyte between the tight junctions of endothelial cells lining blood vessels, typically the fourth and final step of cellular extravasation.","definition_xrefs":["PMID:8600538","PMID:7507411","PMID:14680625","ISBN:0781735149","PMID:14708592"],"direct_ancestors":[{"relation_name":"is_a","term_name":"leukocyte migration","termid":"GO:0050900"},{"relation_name":"part_of","term_name":"cellular extravasation","termid":"GO:0045123"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"diapedesis","termid":"GO:0050904"}


id: PBO:0083854
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  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Exosome non-catalytic core component; involved in 3'-5' RNA processing and degradation in both the nucleus and the cytoplasm; predicted to contain RNA binding domains; mutations in the human ortholog, EXOSC2, cause SHRF (Short stature, Hearing loss, Retinitis pigmentosa and distinctive Facies) syndrome, an RNA exosomopathy","termid":"PBO:0083854"}


id: PBO:0085790
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  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein of unknown function; associates with meiosis-specific protein Spo1p","termid":"PBO:0085790"}


id: GO:0008743
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  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: L-threonine + NAD+ = L-2-amino-3-oxobutanoate + CO2 + NADH.","definition_xrefs":["EC:1.1.1.103","RHEA:13161"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor","termid":"GO:0016616"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0016491","GO:0003824"],"is_obsolete":false,"name":"L-threonine 3-dehydrogenase activity","secondary_identifiers":["MetaCyc:THREODEHYD-RXN","Reactome:R-HSA-6798667","KEGG_REACTION:R01465"],"synonyms":[{"name":"L-threonine dehydrogenase activity","type":"related"},{"name":"L-threonine:NAD+ oxidoreductase activity","type":"related"},{"name":"threonine 3-dehydrogenase activity","type":"broad"},{"name":"threonine dehydrogenase activity","type":"related"}],"termid":"GO:0008743"}


id: GO:0045281
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id: FYPO:0001629
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id: PBO:0056344
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  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitogen-activated protein kinase kinase kinase kinase 3","termid":"PBO:0056344"}


id: PBO:0005148
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  {"annotation_feature_type":"gene","cv_name":"EC numbers","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"3.6.1.17","termid":"PBO:0005148"}


id: PBO:0067249
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  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 322, pseudogene","termid":"PBO:0067249"}


id: GO:0002900
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id: GO:0150056
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id: GO:0045786
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regulation of cell cycle","references_by_uniquename":{"GO_REF:0000107":null,"PMID:21873635":null},"synonyms":[{"name":"down regulation of progression through cell cycle","type":"exact"},{"name":"down-regulation of progression through cell cycle","type":"exact"},{"name":"downregulation of progression through cell cycle","type":"exact"},{"name":"inhibition of progression through cell cycle","type":"narrow"},{"name":"negative regulation of cell cycle progression","type":"exact"},{"name":"negative regulation of progression through cell cycle","type":"exact"}],"termid":"GO:0045786","terms_by_termid":{"GO:0001100":null,"GO:0007094":null,"GO:0007095":null,"GO:0010972":null,"GO:0031030":null,"GO:0031568":null,"GO:0031569":null,"GO:0031571":null,"GO:0031573":null,"GO:0033314":null,"GO:0033315":null,"GO:0033316":null,"GO:0044773":null,"GO:0044778":null,"GO:0044878":null,"GO:0045128":null,"GO:0045875":null,"GO:0051447":null,"GO:0051598":null,"GO:0051728":null,"GO:0070317":null,"GO:0075297":null,"GO:0090267":null,"GO:0110031":null,"GO:0110044":null,"GO:0110045":null,"GO:0110046":null,"GO:0140499":null,"GO:0140648":null,"GO:1902103":null,"GO:1902413":null,"GO:1902424":null,"GO:1902426":null,"GO:1902845":null,"GO:1903464":null,"GO:1903467":null,"GO:1903472":null,"GO:1903500":null,"GO:1905318":null,"GO:1905325":null,"GO:1905326":null,"GO:1905412":null,"GO:1905757":null,"GO:2000134":null,"GO:2000816":null}}


id: PBO:0045327
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dedicator of cytokinesis 6","termid":"PBO:0045327"}


id: CHEBI:3259
data:
  {"annotation_feature_type":"gene","cv_name":"chebi_ontology","direct_ancestors":[{"relation_name":"is_a","term_name":"chemical entity","termid":"CHEBI:24431"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CCCP","termid":"CHEBI:3259"}


id: PBO:0000676
data:
  {"annotation_feature_type":"gene","cv_name":"EC numbers","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"5.4.2.1","termid":"PBO:0000676"}


id: PBO:0054318
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1710","termid":"PBO:0054318"}


id: PBO:0005716
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"riboflavin kinase Fmn1","termid":"PBO:0005716"}


id: PBO:0055421
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2851","termid":"PBO:0055421"}


id: GO:0009048
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Compensating for the two-fold variation in X-chromosome:autosome ratios between sexes by heterochromatin formation leading to a global inactivation of all, or most of, the genes on one of the X-chromosomes in the XX sex.","definition_xrefs":["GOC:pr","PMID:11498577","PMID:20622855","GOC:jl","Wikipedia:XY_sex-determination_system","GOC:mr"],"direct_ancestors":[{"relation_name":"is_a","term_name":"sex-chromosome dosage compensation","termid":"GO:0007549"},{"relation_name":"is_a","term_name":"heterochromatin formation","termid":"GO:0031507"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006325"},{"rel_name":"negatively_regulates","termid":"GO:0010467"},{"rel_name":"regulates","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0010467","GO:0008150","GO:0006325"],"is_obsolete":false,"name":"dosage compensation by inactivation of X chromosome","secondary_identifiers":["Wikipedia:X-inactivation"],"synonyms":[{"name":"Barr body formation","type":"related"},{"name":"X chromosome inactivation","type":"exact"},{"name":"chromosome inactivation","type":"broad"}],"termid":"GO:0009048"}


id: PBO:0058906
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 12124","termid":"PBO:0058906"}


id: GO:0140855
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: histone H3-serine (position 57) + ATP = histone H3-phosphoserine (position 57) + ADP. This reaction is the addition of a phosphate group to the serine residue at position 57 of histone H3.","definition_xrefs":["PMID:24820035"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein serine/threonine kinase activity","termid":"GO:0004674"},{"relation_name":"is_a","term_name":"histone H3 kinase activity","termid":"GO:0140996"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0004672"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0140096"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0016301"}],"interesting_parent_ids":["GO:0003674","GO:0016740","GO:0004672","GO:0016301","GO:0003824","GO:0140096"],"is_obsolete":false,"name":"histone H3S57 kinase activity","synonyms":[{"name":"histone kinase activity (H3-S57 specific)","type":"exact"},{"name":"histone serine kinase activity (H3-S57 specific)","type":"exact"},{"name":"histone-serine kinase activity (H3-S57 specific)","type":"exact"}],"termid":"GO:0140855"}


id: PBO:0057207
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 376a-2","termid":"PBO:0057207"}


id: GO:0098880
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process which maintains the organization and the arrangement of proteins in the presynaptic specialization.","definition_xrefs":["GOC:dos"],"direct_ancestors":[{"relation_name":"is_a","term_name":"postsynaptic density organization","termid":"GO:0097106"},{"relation_name":"is_a","term_name":"maintenance of synapse structure","termid":"GO:0099558"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"maintenance of postsynaptic specialization structure","termid":"GO:0098880"}


id: GO:0035776
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The progression of the pronephric proximal tubule over time, from its formation to the mature structure. A pronephric nephron tubule is an epithelial tube that is part of the pronephros.","definition_xrefs":["GOC:mtg_kidney_jan10","PMID:18787069","GOC:yaf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pronephric nephron tubule development","termid":"GO:0039020"},{"relation_name":"is_a","term_name":"proximal tubule development","termid":"GO:0072014"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"pronephric proximal tubule development","termid":"GO:0035776"}


id: PBO:0074892
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nucleolar RNA, C/D box 67","termid":"PBO:0074892"}


id: PBO:0044798
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"defensin alpha 11, pseudogene","termid":"PBO:0044798"}


id: PBO:0031305
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-resistance_to_amiloride","termid":"PBO:0031305"}


id: PBO:0071853
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein S2 pseudogene 48","termid":"PBO:0071853"}


id: PBO:0062015
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 2 subfamily L member 5","termid":"PBO:0062015"}


id: GO:0046336
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of ethanolamine (2-aminoethanol), an important water-soluble base of phospholipid (phosphatidylethanolamine).","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ethanolamine metabolic process","termid":"GO:0006580"},{"relation_name":"is_a","term_name":"primary alcohol catabolic process","termid":"GO:0034310"},{"relation_name":"is_a","term_name":"cellular biogenic amine catabolic process","termid":"GO:0042402"},{"relation_name":"is_a","term_name":"primary amino compound catabolic process","termid":"GO:1901161"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0044281","GO:0008150"],"is_obsolete":false,"name":"ethanolamine catabolic process","synonyms":[{"name":"ethanolamine breakdown","type":"exact"},{"name":"ethanolamine catabolism","type":"exact"},{"name":"ethanolamine degradation","type":"exact"}],"termid":"GO:0046336"}


id: PBO:0072535
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein SA pseudogene 65","termid":"PBO:0072535"}


id: PBO:0031737
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_mating_type_switching","termid":"PBO:0031737"}


id: PBO:0067864
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 5S ribosomal pseudogene 166","termid":"PBO:0067864"}


id: GO:0062081
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Combining with a MHC class Ib protein complex to mediate signaling that activates a lymphocyte.","definition_xrefs":["DOI:10.1002/9780470015902.a0024246"],"direct_ancestors":[{"relation_name":"is_a","term_name":"MHC class Ib receptor activity","termid":"GO:0032394"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0038023"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0038023"],"is_obsolete":false,"name":"activating MHC class Ib receptor activity","termid":"GO:0062081"}


id: PBO:0029439
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_protein_degradation","termid":"PBO:0029439"}


id: GO:0061899
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 11-cis-retinal + 2 H+ + O2 + 2 reduced [adrenodoxin] = 11-cis-3,4-didehydro-retinal + 2 H2O + 2 oxidized [adrenodoxin].","definition_xrefs":["PMID:27059013"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen","termid":"GO:0016705"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016491","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"11-cis-retinal 3,4-desaturase activity","termid":"GO:0061899"}


id: PBO:0011438
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"bifunctional thiamine-phosphate dipyrophosphorylase/hydroxyethylthiazole kinase","termid":"PBO:0011438"}


id: PBO:0036547
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"succinate-CoA ligase beta subunit Lsc2 (predicted)","termid":"PBO:0036547"}


id: PBO:0054960
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2374","termid":"PBO:0054960"}


id: PBO:0076490
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TARDBP pseudogene 5","termid":"PBO:0076490"}


id: GO:0002681
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which T cell receptor genes are formed through recombination of the germline genetic elements, also known as T cell receptor gene segments.","definition_xrefs":["GOC:add","ISBN:0781735149"],"direct_ancestors":[{"relation_name":"is_a","term_name":"somatic diversification of immune receptors via germline recombination within a single locus","termid":"GO:0002562"},{"relation_name":"is_a","term_name":"somatic diversification of T cell receptor genes","termid":"GO:0002568"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006310"},{"rel_name":"is_a","termid":"GO:0006259"}],"interesting_parent_ids":["GO:0008150","GO:0006259","GO:0006310"],"is_obsolete":false,"name":"somatic recombination of T cell receptor gene segments","synonyms":[{"name":"somatic recombination of TCR gene segments","type":"exact"}],"termid":"GO:0002681"}


id: GO:0001518
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A sodium channel in a cell membrane whose opening is governed by the membrane potential.","definition_xrefs":["ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"sodium channel complex","termid":"GO:0034706"},{"relation_name":"is_a","term_name":"plasma membrane protein complex","termid":"GO:0098797"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005886"},{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575","GO:0005886","GO:0032991"],"is_obsolete":false,"name":"voltage-gated sodium channel complex","secondary_identifiers":["NIF_Subcellular:sao785001660"],"synonyms":[{"name":"voltage gated sodium channel complex","type":"exact"},{"name":"voltage-dependent sodium channel complex","type":"exact"},{"name":"voltage-sensitive sodium channel complex","type":"exact"}],"termid":"GO:0001518"}


id: PBO:0049458
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glycogenin 1 pseudogene 3","termid":"PBO:0049458"}


id: PBO:0109641
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"retinoic acid early transcript 1M (pseudogene)","termid":"PBO:0109641"}


id: PBO:0059955
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MT-ND2 pseudogene 41","termid":"PBO:0059955"}


id: GO:0032468
data:
  {"annotated_genes":["SJAG_04096"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[70832],"is_not":false,"summary":null,"term":"GO:0032468"}]},"cv_name":"biological_process","definition":"Any process involved in the maintenance of an internal steady state of calcium ions within the Golgi apparatus of a cell or between the Golgi and its surroundings.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"intracellular calcium ion homeostasis","termid":"GO:0006874"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04096":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0098771"}],"interesting_parent_ids":["GO:0008150","GO:0098771"],"is_obsolete":false,"name":"Golgi calcium ion homeostasis","references_by_uniquename":{"PMID:21873635":null},"synonyms":[{"name":"Golgi calcium ion concentration regulation","type":"exact"},{"name":"calcium ion homeostasis in Golgi","type":"exact"},{"name":"regulation of Golgi calcium ion concentration","type":"exact"},{"name":"regulation of calcium ion concentration in Golgi","type":"exact"}],"termid":"GO:0032468","terms_by_termid":{"GO:0032468":null}}


id: GO:0120224
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The biological process whose specific outcome is the progression of a larynx from an initial condition to its mature state. This process begins with the formation of the larynx and ends with the mature structure. A larynx is a continuation of the pharynx that is involved in breathing, sound production, and protecting the trachea against food aspiration.","definition_xrefs":["GOC:krc","PMID:28177282"],"direct_ancestors":[{"relation_name":"is_a","term_name":"animal organ development","termid":"GO:0048513"},{"relation_name":"part_of","term_name":"respiratory system development","termid":"GO:0060541"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"larynx development","termid":"GO:0120224"}


id: GO:0071886
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to the amine 1-(4-iodo-2,5-dimethoxyphenyl)propan-2-amine, a serotonin receptor agonist that can act as a psychedelic drug.","definition_xrefs":["PMID:19057895","GOC:yaf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"amine binding","termid":"GO:0043176"},{"relation_name":"is_a","term_name":"organic cyclic compound binding","termid":"GO:0097159"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005488"}],"interesting_parent_ids":["GO:0003674","GO:0005488"],"is_obsolete":false,"name":"1-(4-iodo-2,5-dimethoxyphenyl)propan-2-amine binding","synonyms":[{"name":"(+/-)2-(4-iodo-2,5-dimethoxy-phenyl)-1-methyl-ethylamine binding","type":"exact"},{"name":"1-(4-iodo-2,5-dimethoxyphenyl)-2-aminopropane binding","type":"exact"},{"name":"4-iodo-2,5-dimethoxyphenylisopropylamine binding","type":"exact"}],"termid":"GO:0071886"}


id: PBO:0074604
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nucleolar RNA, H/ACA box 11E","termid":"PBO:0074604"}


id: GO:0052505
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process by which an organism activates, maintains or increases the frequency, rate or extent of the deposition of callose by the symbiont in its cell walls, occurring as part of the defense response of the symbiont organism. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction.","definition_xrefs":["GOC:mtg_pamgo"],"gene_count":0,"genotype_count":0,"name":"obsolete positive regulation by organism of defense-related symbiont cell wall callose deposition (obsolete GO:0052505)","synonyms":[{"name":"induction by organism of defense-related symbiont cell wall callose deposition","type":"narrow"},{"name":"positive regulation by organism of defense-related symbiont cell wall callose deposition","type":"exact"}],"termid":"GO:0052505"}


id: PR:000024854
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- map2 gene or a 1:1 ortholog thereof. In Schizosaccharomyces pombe, proteolytic processing yeilds four peptides - two copies of P-factor 1 and one each of P-factor 2 and P-factor 3.","definition_xrefs":["PRO:MSY","PMID:8314086"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein","termid":"PR:000000001"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"P-factor precursor","pombase_gene_id":"SPCC1795.06","synonyms":[{"name":"map2","type":"exact"}],"termid":"PR:000024854"}


id: PBO:0028613
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abolished_cell_wall_biogenesis","termid":"PBO:0028613"}


id: PBO:0004210
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DASH complex subunit Duo1","termid":"PBO:0004210"}


id: PBO:0036266
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"HECT-type ubiquitin-protein ligase E3 involved in ER-associated protein catabolic process (predicted)","termid":"PBO:0036266"}


id: PBO:0030132
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_cellular_copper_level","termid":"PBO:0030132"}


id: PBO:0029494
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_duration_of_meiotic_anaphase_II","termid":"PBO:0029494"}


id: GO:0046375
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving K antigen, a capsular polysaccharide antigen carried on the surface of bacterial capsules that masks somatic (O) antigens.","definition_xrefs":["ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"polysaccharide metabolic process","termid":"GO:0005976"},{"relation_name":"is_a","term_name":"carbohydrate derivative metabolic process","termid":"GO:1901135"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005975"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0005975","GO:0008150"],"is_obsolete":false,"name":"K antigen metabolic process","synonyms":[{"name":"K antigen metabolism","type":"exact"}],"termid":"GO:0046375"}


id: PR:Q9Y7M7
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"An ATP-binding cassette sub-family B member 10, mitochondrial that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO03018","PRO:DNx","PANTHER:PTHR24221:SF76"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ATP-dependent permease MDL1, mitochondrial (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC9B6.09c","secondary_identifiers":["UniProtKB:Q9Y7M7"],"synonyms":[{"name":"ABC transporter mdl1 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-ABCB10","type":"exact"}],"termid":"PR:Q9Y7M7"}


id: FYPO:0005128
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of RNA transcribed from middle meiotic genes measured in a cell is higher than normal (i.e. higher than observed in wild-type cells during vegetative growth). Middle meiotic genes are normally transcribed during meiotic nuclear division.","definition_xrefs":["PMID:17927811","PomBase:al","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased level of meiotic gene mRNA during vegetative growth","termid":"FYPO:0002173"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0006551"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0001985","FYPO:0000002","FYPO:0001320","FYPO:0006551"],"is_obsolete":false,"name":"increased level of middle meiotic gene mRNA during vegetative growth","synonyms":[{"name":"increased level of middle meiosis gene mRNA during vegetative growth","type":"exact"},{"name":"increased level of middle meiotic gene RNA during vegetative growth","type":"exact"},{"name":"increased level of middle meiotic gene mRNA during vegetative growth during mitotic cell cycle","type":"related"},{"name":"increased level of middle meiotic gene transcripts during vegetative growth","type":"exact"}],"termid":"FYPO:0005128"}


id: PBO:0079357
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tubulin alpha 3c","termid":"PBO:0079357"}


id: GO:1902818
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving ethyl acetate.","definition_xrefs":["GOC:TermGenie","GOC:mengo_curators","GO_REF:0000068","PMID:16013377"],"direct_ancestors":[{"relation_name":"is_a","term_name":"acetate ester metabolic process","termid":"GO:1900619"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"ethyl acetate metabolic process","synonyms":[{"name":"ethyl acetate metabolism","type":"exact"},{"name":"ethyl ethanoate metabolic process","type":"exact"}],"termid":"GO:1902818"}


id: GO:0006843
data:
  {"annotated_genes":["SJAG_00275","SJAG_01872"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[71612,72428],"is_not":false,"summary":null,"term":"GO:0006843"}]},"cv_name":"biological_process","definition":"The directed movement of citrate, 2-hydroxy-1,2,3-propanetricarboyxlate, into or out of a mitochondrial matrix.","definition_xrefs":["GOC:ai","PMID:20371607"],"direct_ancestors":[{"relation_name":"is_a","term_name":"citrate transport","termid":"GO:0015746"},{"relation_name":"is_a","term_name":"mitochondrial tricarboxylic acid transmembrane transport","termid":"GO:1990546"}],"gene_count":2,"genes_by_uniquename":{"SJAG_00275":null,"SJAG_01872":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0055085"},{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0055085","GO:0006810","GO:0051179"],"is_obsolete":false,"name":"mitochondrial citrate transmembrane transport","references_by_uniquename":{"PMID:21873635":null},"secondary_identifiers":["GO:1990541"],"synonyms":[{"name":"mitochondrial citrate transport","type":"related"}],"termid":"GO:0006843","terms_by_termid":{"GO:0006843":null}}


id: FYPO:0003865
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype in which the amount of protein measured in a cell is lower than normal when the cell is in G0 phase. Total protein or a specific protein may be affected.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased protein level","termid":"FYPO:0000835"},{"relation_name":"is_a","term_name":"decreased level of substance in cell during G0","termid":"FYPO:0003864"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"output_of","termid":"FYPO:0006551"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0006551","FYPO:0001985","FYPO:0005447"],"is_obsolete":false,"name":"decreased protein level during G0","synonyms":[{"name":"decreased protein accumulation during G0","type":"related"},{"name":"decreased protein level during cell quiescence","type":"exact"},{"name":"decreased protein level during quiescence","type":"exact"},{"name":"reduced protein level during G0","type":"exact"}],"termid":"FYPO:0003865"}


id: GO:0009359
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A protein complex that functions as an endonuclease to cleave DNA at or near a specific recognition site, when that site is unmethylated. These complexes may be dimers or tetramers; it is also possible for the endonuclease to be in a complex with the corresponding methyltransferase that methylates the recognition site. DNA restriction systems such as this are used by bacteria to defend against phage and other foreign DNA that may enter a cell.","definition_xrefs":["PMID:12654995"],"direct_ancestors":[{"relation_name":"is_a","term_name":"endodeoxyribonuclease complex","termid":"GO:1905347"},{"relation_name":"part_of","term_name":"cytoplasm","termid":"GO:0005737"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0005575","GO:0005737","GO:0032991"],"is_obsolete":false,"name":"type II site-specific deoxyribonuclease complex","synonyms":[{"name":"type II restriction enzyme complex","type":"exact"}],"termid":"GO:0009359"}


id: PBO:0058727
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 6855","termid":"PBO:0058727"}


id: PBO:0078390
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-Phe (anticodon GAA) 1-5","termid":"PBO:0078390"}


id: PBO:0042092
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"coiled-coil domain containing 162, pseudogene","termid":"PBO:0042092"}


id: PBO:0069482
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 749, pseudogene","termid":"PBO:0069482"}


id: FYPO:0005065
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which methylation of lysine at position 9 of histone H3 at the mating type locus occurs to a greater extent than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased histone H3-K9 methylation during vegetative growth","termid":"FYPO:0000871"},{"relation_name":"is_a","term_name":"abnormal histone methylation at silent mating-type cassette during vegetative growth","termid":"FYPO:0007373"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0002494"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0002274"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0001320","FYPO:0000002","FYPO:0001985","FYPO:0002274","FYPO:0002494"],"is_obsolete":false,"name":"increased histone H3-K9 methylation at mating type locus during vegetative growth","synonyms":[{"name":"increased histone H3 K9 methylation at mating type locus during vegetative growth","type":"exact"},{"name":"increased histone H3-K9 methylation at mating type locus during mitotic cell cycle","type":"related"},{"name":"increased histone H3K9 methylation at mating type locus during vegetative growth","type":"exact"},{"name":"increased histone H3K9me at mating type locus during vegetative growth","type":"exact"},{"name":"increased histone lysine H3 K9 methylation at mating type locus during vegetative growth","type":"exact"}],"termid":"FYPO:0005065"}


id: PBO:0068735
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U5A small nuclear 6, pseudogene","termid":"PBO:0068735"}


id: GO:0032246
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of the directed movement of a pyrimidine nucleoside into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of nucleoside transport","termid":"GO:0032242"},{"relation_name":"regulates","term_name":"pyrimidine nucleoside transport","termid":"GO:0015864"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0006810"],"is_obsolete":false,"name":"regulation of pyrimidine nucleoside transport","termid":"GO:0032246"}


id: PR:000027621
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A transcription factor zip1 ubiquitinated form in Schizosaccharomyces pombe. Ubiquitinated by SCF(Pof1). Example: UniProtKB:Q10424-1, MOD:01148.","definition_xrefs":["PMID:15660136","PomBase:MAH"],"direct_ancestors":[{"relation_name":"is_a","term_name":"transcription factor zip1","termid":"PR:000027614"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transcription factor zip1 ubiquitinated form (Schizosaccharomyces pombe)","pombase_gene_id":"SPAC25G10.03","synonyms":[{"name":"Spom-zip1/UbiqLys+","type":"exact"}],"termid":"PR:000027621"}


id: PBO:0089547
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tail anchored plasma membrane protein Uvi15","termid":"PBO:0089547"}


id: PBO:0073893
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"solute carrier family 12 member 9","termid":"PBO:0073893"}


id: SO:0001145
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"The peptide twists in an clockwise, right handed manner. The dihedral angles for this turn are: Residue(i): -140 degrees < chi(1) -120 degrees < -20 degrees, +80 degrees psi +120 degrees < +180 degrees, residue(i+1): +20 degrees < phi < +140 degrees, -40 < psi < +90 degrees.","definition_xrefs":["EBIBS:GAR"],"direct_ancestors":[{"relation_name":"is_a","term_name":"serine_threonine_turn","termid":"SO:0001141"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"SO:0000839"}],"interesting_parent_ids":["SO:0000839"],"is_obsolete":false,"name":"st_turn_right_handed_type_two","secondary_identifiers":["BS:00233"],"synonyms":[{"name":"st turn right handed type two","type":"exact"},{"name":"st_turn_iir","type":"exact"}],"termid":"SO:0001145"}


id: PBO:0055390
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2820","termid":"PBO:0055390"}


id: PBO:0027268
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_RNA_level_during_cellular_response_to_copper_ion","termid":"PBO:0027268"}


id: FYPO:0002450
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A phenotype in which a spore germinates to produce a cell that is septated and has abnormal morphology (i.e. size, shape, or structure), and that undergoes two or more rounds of cell division and then dies.","definition_xrefs":["PomBase:mah","PomBase:al"],"direct_ancestors":[{"relation_name":"is_a","term_name":"inviable after spore germination, multiple cell divisions, abnormal morphology","termid":"FYPO:0002148"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"has_part","termid":"FYPO:0001320"},{"rel_name":"has_part","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000004"},{"rel_name":"is_a","termid":"FYPO:0000005"},{"rel_name":"has_part","termid":"FYPO:0000005"}],"interesting_parent_ids":["FYPO:0000005","FYPO:0000002","FYPO:0001320","FYPO:0000004","FYPO:0001985"],"is_obsolete":false,"name":"inviable after spore germination, multiple cell divisions, septated cell with abnormal morphology","synonyms":[{"name":"inviable following spore germination, multiple cell divisions, septated cell with abnormal morphology","type":"exact"},{"name":"inviable germinated spore, multiple cell divisions, septated cell with abnormal morphology","type":"exact"},{"name":"lethal after spore germination, multiple cell divisions, septated cell with abnormal morphology","type":"exact"}],"termid":"FYPO:0002450"}


id: MOD:01087
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively substitutes a 2,4,5-trichlorophenyl group for a hydrogen atom.","definition_xrefs":["DeltaMass:0"],"direct_ancestors":[{"relation_name":"is_a","term_name":"reagent derivatized residue","termid":"MOD:00848"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"2,4,5-trichlorophenyl modified residue","termid":"MOD:01087"}


id: PBO:0069379
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 639, pseudogene","termid":"PBO:0069379"}


id: PBO:0005419
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"vigilin (predicted)","termid":"PBO:0005419"}


id: CHEBI:32599
data:
  {"annotation_feature_type":"gene","cv_name":"chebi_ontology","definition":"A magnesium salt having sulfate as the counterion.","direct_ancestors":[{"relation_name":"is_a","term_name":"chemical entity","termid":"CHEBI:24431"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"magnesium sulfate","termid":"CHEBI:32599"}


id: GO:0019145
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 4-aminobutanal + NAD+ + H2O = 4-aminobutanoate + NADH + 2 H+.","definition_xrefs":["EC:1.2.1.19"],"direct_ancestors":[{"relation_name":"is_a","term_name":"aldehyde dehydrogenase (NAD+) activity","termid":"GO:0004029"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003824","GO:0016491","GO:0003674"],"is_obsolete":false,"name":"aminobutyraldehyde dehydrogenase activity","secondary_identifiers":["RHEA:19105","MetaCyc:AMINOBUTDEHYDROG-RXN"],"synonyms":[{"name":"4-aminobutanal dehydrogenase activity","type":"related"},{"name":"4-aminobutanal:NAD+ 1-oxidoreductase activity","type":"related"},{"name":"4-aminobutyraldehyde dehydrogenase activity","type":"related"},{"name":"ABAL dehydrogenase activity","type":"related"},{"name":"gamma-aminobutyraldehyde dehydroganase activity","type":"related"}],"termid":"GO:0019145"}


id: GO:0018581
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: benzene-1,2,4-triol + O2 = 3-hydroxy-cis,cis-muconate + 2 H(+).","definition_xrefs":["RHEA:19441"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen","termid":"GO:0016702"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0016491","GO:0003824"],"is_obsolete":false,"name":"hydroxyquinol 1,2-dioxygenase activity","secondary_identifiers":["UM-BBD_reactionID:r0232","MetaCyc:RXN-17556","EC:1.13.11.37"],"termid":"GO:0018581"}


id: GO:0141063
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The establishment of epigenetic modifications (imprints) in a plant central cell, leading to an asymmetry between the two maternal alleles and the paternal allele, and differential expression of the corresponding alleles in the developing endosperm. This can happen through heterochromatin formation or differential chromatin loop formation.","definition_xrefs":["PMID:28118754"],"direct_ancestors":[{"relation_name":"is_a","term_name":"genomic imprinting","termid":"GO:0071514"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006325"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0006325","GO:0008150","GO:0010467"],"is_obsolete":false,"name":"epigenetic programming in the central cell","termid":"GO:0141063"}


id: FYPO:0003517
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of L-selenoneine measured in a cell is higher than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased level of substance in cell during vegetative growth","termid":"FYPO:0001330"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000002","FYPO:0001320"],"is_obsolete":false,"name":"increased cellular L-selenoneine level during vegetative growth","synonyms":[{"name":"increased L-selenoneine level during vegetative growth","type":"exact"},{"name":"increased cellular L-selenoneine level during mitotic cell cycle","type":"related"}],"termid":"FYPO:0003517"}


id: GO:0021513
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process that regulates the coordinated growth and differentiation that establishes the non-random dorsal-ventral spatial arrangement of the spinal cord.","definition_xrefs":["GOC:dgh","GO_REF:0000021","GOC:dph","GOC:jid","GOC:cls"],"direct_ancestors":[{"relation_name":"is_a","term_name":"dorsal/ventral pattern formation","termid":"GO:0009953"},{"relation_name":"part_of","term_name":"spinal cord patterning","termid":"GO:0021511"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"spinal cord dorsal/ventral patterning","synonyms":[{"name":"spinal cord dorsal-ventral patterning","type":"exact"},{"name":"spinal cord dorsoventral patterning","type":"exact"}],"termid":"GO:0021513"}


id: PBO:0091136
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial complex assembly factor, LYR family Fmc1","termid":"PBO:0091136"}


id: PBO:0080462
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"visual system homeobox 1","termid":"PBO:0080462"}


id: GO:0090515
data:
  {"annotated_genes":["SJAG_03256"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[99239],"is_not":false,"summary":null,"term":"GO:0090515"}]},"cv_name":"biological_process","definition":"The directed movement of L-glutamate into the vacuole across the vacuolar membrane.","definition_xrefs":["GOC:al"],"direct_ancestors":[{"relation_name":"is_a","term_name":"L-glutamate transmembrane transport","termid":"GO:0015813"},{"relation_name":"is_a","term_name":"glutamate transmembrane import into vacuole","termid":"GO:0090454"}],"gene_count":1,"genes_by_uniquename":{"SJAG_03256":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0055085"},{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0006810","GO:0055085","GO:0051179"],"is_obsolete":false,"name":"L-glutamate transmembrane import into vacuole","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0090515","terms_by_termid":{"GO:0090515":null}}


id: PBO:0046660
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"espin","termid":"PBO:0046660"}


id: PBO:0061175
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nuclear-encoded mitochondrial tRNA-Gln (TTG) 5-1","termid":"PBO:0061175"}


id: PBO:0061188
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nuclear-encoded mitochondrial tRNA-Ser (TGA) 3-1","termid":"PBO:0061188"}


id: GO:0090126
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The aggregation, arrangement and bonding together of a set of components to form a protein complex that contributes to synapse maturation.","definition_xrefs":["GOC:tb","GOC:ascb_2009","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein-containing complex assembly","termid":"GO:0065003"},{"relation_name":"part_of","term_name":"synapse maturation","termid":"GO:0060074"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0044085"},{"rel_name":"is_a","termid":"GO:0065003"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0065003","GO:0008150","GO:0044085"],"is_obsolete":false,"name":"protein-containing complex assembly involved in synapse maturation","synonyms":[{"name":"protein complex assembly involved in synapse maturation","type":"related"}],"termid":"GO:0090126"}


id: PBO:0017614
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"GTP cyclohydrolase Fol2 (predicted)","termid":"PBO:0017614"}


id: PBO:0088241
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial ribosomal protein subunit S41","termid":"PBO:0088241"}


id: GO:0046408
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: chlorophyllide a + 2 H+ + phytyl diphosphate = chlorophyll a + diphosphate.","definition_xrefs":["RHEA:17317","EC:2.5.1.62"],"direct_ancestors":[{"relation_name":"is_a","term_name":"prenyltransferase activity","termid":"GO:0004659"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0016765"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016740","GO:0016765"],"is_obsolete":false,"name":"chlorophyll synthetase activity","secondary_identifiers":["KEGG_REACTION:R06284","GO:0043787","MetaCyc:RXN1F-66"],"synonyms":[{"name":"chlorophyll synthase activity","type":"exact"},{"name":"chlorophyllide-a:phytyl-diphosphate phytyltransferase activity","type":"exact"}],"termid":"GO:0046408"}


id: GO:0034495
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The volume enclosed by the protein storage vacuole membrane.","definition_xrefs":["GOC:rph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"plant-type vacuole lumen","termid":"GO:0000330"},{"relation_name":"part_of","term_name":"protein storage vacuole","termid":"GO:0000326"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005773"},{"rel_name":"part_of","termid":"GO:0005737"}],"interesting_parent_ids":["GO:0005575","GO:0005773","GO:0005737"],"is_obsolete":false,"name":"protein storage vacuole lumen","termid":"GO:0034495"}


id: GO:0060370
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process of causing a cell to become susceptible to T cell mediated cytotoxicity.","definition_xrefs":["GOC:tb","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of T cell mediated cytotoxicity","termid":"GO:0001916"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"susceptibility to T cell mediated cytotoxicity","termid":"GO:0060370"}


id: PBO:0069391
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 651, pseudogene","termid":"PBO:0069391"}


id: GO:0043489
data:
  {"annotated_genes":["SJAG_03283","SJAG_03696","SJAG_04586","SJAG_02573","SJAG_04825","SJAG_04946"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[85889,77702,77407,95558],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0070935"},{"annotations":[85198],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0048255"},{"annotations":[86317],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0090669"}]},"cv_name":"biological_process","definition":"Prevention of degradation of RNA molecules.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of RNA stability","termid":"GO:0043487"},{"relation_name":"is_a","term_name":"negative regulation of RNA catabolic process","termid":"GO:1902369"}],"gene_count":6,"genes_by_uniquename":{"SJAG_02573":null,"SJAG_03283":null,"SJAG_03696":null,"SJAG_04586":null,"SJAG_04825":null,"SJAG_04946":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0044248"},{"rel_name":"regulates","termid":"GO:0010467"},{"rel_name":"negatively_regulates","termid":"GO:0044248"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0010467","GO:0008150","GO:0044248"],"is_obsolete":false,"name":"RNA stabilization","references_by_uniquename":{"GO_REF:0000107":null,"PMID:21873635":null},"termid":"GO:0043489","terms_by_termid":{"GO:0048255":null,"GO:0070935":null,"GO:0090669":null}}


id: GO:0061509
data:
  {"annotated_genes":["SJAG_01790","SJAG_06270","SJAG_02514","SJAG_04455","SJAG_03508","SJAG_00229"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[74162,91201,96732,100397,102878,105445],"is_not":false,"summary":null,"term":"GO:0061509"}]},"cv_name":"biological_process","definition":"Any process in which a protein is transported to, or maintained to the old mitotic spindle pole body resulting in its being distributed asymmetrically.","definition_xrefs":["GOC:vw","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"asymmetric protein localization to old or new spindle pole body","termid":"GO:0061492"},{"relation_name":"is_a","term_name":"protein localization to mitotic spindle pole body","termid":"GO:1902440"}],"gene_count":6,"genes_by_uniquename":{"SJAG_00229":null,"SJAG_01790":null,"SJAG_02514":null,"SJAG_03508":null,"SJAG_04455":null,"SJAG_06270":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0051179"}],"interesting_parent_ids":["GO:0051179","GO:0008150"],"is_obsolete":false,"name":"asymmetric protein localization to old mitotic spindle pole body","references_by_uniquename":{"GO_REF:0000107":null,"PMID:21873635":null},"termid":"GO:0061509","terms_by_termid":{"GO:0061509":null}}


id: FYPO:0005548
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the phosphorylation of one or more specific proteins, or of specific protein sites, occurs to a greater extent than normal during a cellular response to brefeldin A.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased protein phosphorylation during vegetative growth","termid":"FYPO:0001038"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0002274"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0002494"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0002274","FYPO:0005447","FYPO:0001320","FYPO:0001985","FYPO:0002494","FYPO:0000002"],"is_obsolete":false,"name":"increased protein phosphorylation during cellular response to brefeldin A","synonyms":[{"name":"increased protein phosphorylation during cellular response to brefeldin A during mitotic cell cycle","type":"related"},{"name":"increased protein phosphorylation during cellular response to brefeldin A during vegetative growth","type":"exact"}],"termid":"FYPO:0005548"}


id: PBO:0084279
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Integral membrane protein of the endoplasmic reticulum; required for normal content of cell wall beta-1,6-glucan","termid":"PBO:0084279"}


id: GO:1900551
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of N',N'',N'''-triacetylfusarinine C.","definition_xrefs":["GOC:di","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"secondary metabolite biosynthetic process","termid":"GO:0044550"},{"relation_name":"is_a","term_name":"N',N'',N'''-triacetylfusarinine C metabolic process","termid":"GO:1900549"},{"relation_name":"is_a","term_name":"organonitrogen compound biosynthetic process","termid":"GO:1901566"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0019748"}],"interesting_parent_ids":["GO:0008150","GO:0019748"],"is_obsolete":false,"name":"N',N'',N'''-triacetylfusarinine C biosynthetic process","synonyms":[{"name":"N',N'',N'''-triacetylfusarinine C anabolism","type":"exact"},{"name":"N',N'',N'''-triacetylfusarinine C biosynthesis","type":"exact"},{"name":"N',N'',N'''-triacetylfusarinine C formation","type":"exact"},{"name":"N',N'',N'''-triacetylfusarinine C synthesis","type":"exact"}],"termid":"GO:1900551"}


id: PBO:0074343
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 pseudogene 2","termid":"PBO:0074343"}


id: PBO:0031603
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_duration_of_mitotic_S_phase","termid":"PBO:0031603"}


id: PBO:0064683
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"peptidylprolyl isomerase A pseudogene 19","termid":"PBO:0064683"}


id: PBO:0053597
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 624","termid":"PBO:0053597"}


id: PBO:0059680
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MT-CO1 pseudogene 46","termid":"PBO:0059680"}


id: PBO:0108991
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"stabilizer of axonemal microtubules 3","termid":"PBO:0108991"}


id: SO:0001239
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A tanscription start site that is not the most frequently used for transcription of a gene.","direct_ancestors":[{"relation_name":"is_a","term_name":"TSS","termid":"SO:0000315"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"minor_TSS","synonyms":[{"name":"minor TSS","type":"exact"}],"termid":"SO:0001239"}


id: PBO:0061142
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NME/NM23 family member 5","termid":"PBO:0061142"}


id: SO:0000764
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","gene_count":0,"genotype_count":0,"name":"OBSOLETE SO:0000764 BAC_clone (obsolete SO:0000764)","termid":"SO:0000764"}


id: PBO:0079865
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uracil-DNA glycosylase pseudogene 2","termid":"PBO:0079865"}


id: GO:0032450
data:
  {"annotated_genes":["SJAG_02131","SJAG_03824"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[97056,97057],"is_not":false,"summary":null,"term":"GO:0032450"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: alpha-maltose + H2O = 2 alpha-D-glucose.","definition_xrefs":["MetaCyc:RXN-2141"],"direct_ancestors":[{"relation_name":"is_a","term_name":"alpha-1,4-glucosidase activity","termid":"GO:0004558"}],"gene_count":2,"genes_by_uniquename":{"SJAG_02131":null,"SJAG_03824":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016798"},{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003824","GO:0016798","GO:0016787","GO:0003674"],"is_obsolete":false,"name":"maltose alpha-glucosidase activity","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["MetaCyc:RXN-15910","EC:3.2.1.20"],"synonyms":[{"name":"maltase activity","type":"exact"}],"termid":"GO:0032450","terms_by_termid":{"GO:0032450":null}}


id: GO:0141128
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process by which a symbiont superantigen elicits a strong immune response by activating a large number of T cells in a non-specific manner. Unlike conventional antigens, which activate T cells by interacting with specific receptors on the surface of these cells, superantigens can stimulate T cells by binding to regions outside the antigen-binding site. Superantigens can activate a large proportion of T cells, leading to an exaggerated immune response. This excessive activation can result in the release of a large amount of cytokines such as tumor necrosis factor and interleukin-2. The massive cytokine release can lead to an acute toxic shock, causing symptoms such as fever and organ damage.","definition_xrefs":["PMID:28880920","PMID:17427250","PMID:12679262"],"direct_ancestors":[{"relation_name":"is_a","term_name":"symbiont-mediated perturbation of host immune response","termid":"GO:0052553"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"symbiont-mediated non-specific activation of host T-cells","synonyms":[{"name":"symbiont-mediated non-specific T-cell activation in host","type":"exact"},{"name":"symbiont-mediated nonspecific activation of host T-cells","type":"exact"}],"termid":"GO:0141128"}


id: PBO:0080807
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"X-ray repair cross complementing 3","termid":"PBO:0080807"}


id: PBO:0075356
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SOWAHC pseudogene 4","termid":"PBO:0075356"}


id: GO:0042878
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Enables the transfer of D-glucarate, the D-enantiomer of glucarate, from one side of a membrane to the other.","definition_xrefs":["GOC:jl","ISBN:0815340729","GOC:jsg","GOC:mah","ISBN:0198506732","GOC:mtg_transport"],"direct_ancestors":[{"relation_name":"is_a","term_name":"dicarboxylic acid transmembrane transporter activity","termid":"GO:0005310"},{"relation_name":"is_a","term_name":"carbohydrate transmembrane transporter activity","termid":"GO:0015144"},{"relation_name":"is_a","term_name":"aldarate transmembrane transporter activity","termid":"GO:0042876"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0022857","GO:0005215","GO:0003674"],"is_obsolete":false,"name":"D-glucarate transmembrane transporter activity","termid":"GO:0042878"}


id: PBO:0028945
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_glutathione_synthase_activity","termid":"PBO:0028945"}


id: GO:0018537
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 5-methyltetrahydromethanopterin + coenzyme F420 + H+ = 5,10-methylenetetrahydromethanopterin + reduced coenzyme F420.","definition_xrefs":["EC:1.5.98.2","RHEA:21144"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the CH-NH group of donors","termid":"GO:0016645"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0016491","GO:0003824"],"is_obsolete":false,"name":"coenzyme F420-dependent N5,N10-methenyltetrahydromethanopterin reductase activity","secondary_identifiers":["MetaCyc:METHELENE-THMPT-OXI-RXN","KEGG_REACTION:R04464","UM-BBD_reactionID:r0354"],"synonyms":[{"name":"5,10-methylenetetrahydromethanopterin cyclohydrolase activity","type":"related"},{"name":"5,10-methylenetetrahydromethanopterin reductase activity","type":"related"},{"name":"5-methyltetrahydromethanopterin:coenzyme-F420 oxidoreductase activity","type":"related"},{"name":"N(5),N(10)-methylenetetrahydromethanopterin reductase activity","type":"related"},{"name":"N(5),N(10)-methylenetetrahydromethanopterin:coenzyme-F420 oxidoreductase activity","type":"related"},{"name":"N5,N10-methylenetetrahydromethanopterin reductase activity","type":"related"},{"name":"N5,N10-methylenetetrahydromethanopterin:coenzyme-F420 oxidoreductase activity","type":"related"},{"name":"coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase activity","type":"related"},{"name":"methylene-H(4)MPT reductase activity","type":"related"},{"name":"methylene-H4MPT reductase activity","type":"related"},{"name":"methylenetetrahydromethanopterin reductase activity","type":"exact"}],"termid":"GO:0018537"}


id: GO:0060243
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The negative regulation of cell growth in response to increased cell density.","definition_xrefs":["GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of cell growth","termid":"GO:0030308"},{"relation_name":"part_of","term_name":"contact inhibition","termid":"GO:0060242"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of cell growth involved in contact inhibition","termid":"GO:0060243"}


id: PBO:0075778
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"serine and arginine rich splicing factor 4","termid":"PBO:0075778"}


id: PBO:0051368
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"immunoglobulin kappa variable 3D-11","termid":"PBO:0051368"}


id: PBO:0017846
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"urea transmembrane transporter (predicted)","termid":"PBO:0017846"}


id: PBO:0089147
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial ribosomal protein subunit L17","termid":"PBO:0089147"}


id: PBO:0079746
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ubiquitin C-terminal hydrolase L1","termid":"PBO:0079746"}


id: PR:Q9Y7Z1
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- nop16 gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q9Y7Z1"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nucleolar protein 16 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC1539.10","synonyms":[{"name":"Spom972h-nop16","type":"exact"}],"termid":"PR:Q9Y7Z1"}


id: GO:0048752
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which the anatomical structures of the semicircular canals are generated and organized.","definition_xrefs":["GOC:jid","GOC:dgh","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"tube morphogenesis","termid":"GO:0035239"},{"relation_name":"is_a","term_name":"embryonic morphogenesis","termid":"GO:0048598"},{"relation_name":"part_of","term_name":"inner ear morphogenesis","termid":"GO:0042472"},{"relation_name":"part_of","term_name":"semicircular canal development","termid":"GO:0060872"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"semicircular canal morphogenesis","synonyms":[{"name":"embryonic semicircular canal morphogenesis","type":"exact"}],"termid":"GO:0048752"}


id: PBO:0044685
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dendrin","termid":"PBO:0044685"}


id: PBO:0084900
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Mitochondrial transporter repressible by thiamine; THI74 has a paralog, YML018C, that arose from the whole genome duplication; shows sequence homology to human gene SLC35F3, a thiamine transporter implicated in hypertension","termid":"PBO:0084900"}


id: PBO:0055150
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2569","termid":"PBO:0055150"}


id: PBO:0065528
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"patched domain containing 3 (gene/pseudogene)","termid":"PBO:0065528"}


id: GO:0006059
data:
  {"annotated_genes":["SJAG_00237"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[72835],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006062"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways involving hexitols, any alditol with a chain of six carbon atoms in the molecule.","definition_xrefs":["ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"alditol metabolic process","termid":"GO:0019400"}],"gene_count":1,"genes_by_uniquename":{"SJAG_00237":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0005975"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0044281","GO:0008150","GO:0005975"],"is_obsolete":false,"name":"hexitol metabolic process","references_by_uniquename":{"PMID:21873635":null},"synonyms":[{"name":"hexitol metabolism","type":"exact"},{"name":"sugar alcohol (hexitol) metabolic process","type":"exact"},{"name":"sugar alcohol (hexitol) metabolism","type":"exact"}],"termid":"GO:0006059","terms_by_termid":{"GO:0006062":null}}


id: GO:0031119
data:
  {"annotated_genes":["SJAG_03572","SJAG_00319","SJAG_01172","SJAG_04065","SJAG_02978","SJAG_00088","SJAG_01054"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[72694,75054,77323,86857,97915,101585,112255],"is_not":false,"summary":null,"term":"GO:0031119"}]},"cv_name":"biological_process","definition":"The intramolecular conversion of uridine to pseudouridine in a tRNA molecule.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pseudouridine synthesis","termid":"GO:0001522"},{"relation_name":"is_a","term_name":"tRNA modification","termid":"GO:0006400"}],"gene_count":7,"genes_by_uniquename":{"SJAG_00088":null,"SJAG_00319":null,"SJAG_01054":null,"SJAG_01172":null,"SJAG_02978":null,"SJAG_03572":null,"SJAG_04065":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006399"}],"interesting_parent_ids":["GO:0008150","GO:0010467","GO:0006399"],"is_obsolete":false,"name":"tRNA pseudouridine synthesis","references_by_uniquename":{"GO_REF:0000107":null,"PMID:21873635":null},"termid":"GO:0031119","terms_by_termid":{"GO:0031119":null}}


id: PBO:0062767
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 52 subfamily U member 1 pseudogene","termid":"PBO:0062767"}


id: FYPO:0006552
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to the cytoplasm is increased.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal protein localization to cytoplasm","termid":"FYPO:0006098"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000138"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0005447","FYPO:0001320","FYPO:0001985","FYPO:0000138"],"is_obsolete":false,"name":"increased protein localization to cytoplasm","synonyms":[{"name":"increased protein localisation to cytoplasm","type":"exact"},{"name":"increased protein localization to cytoplasm during mitotic cell cycle","type":"related"},{"name":"increased protein localization to cytoplasm during vegetative growth","type":"exact"}],"termid":"FYPO:0006552"}


id: GO:0001082
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Binding to an RNA polymerase I transcription factor, which may be a single protein or a complex, in order to modulate transcription. A protein binding transcription factor may or may not also interact with the template nucleic acid (either DNA or RNA) as well.","definition_xrefs":["GOC:txnOH"],"gene_count":0,"genotype_count":0,"name":"obsolete transcription factor activity, RNA polymerase I transcription factor binding (obsolete GO:0001082)","synonyms":[{"name":"RNA polymerase I transcription factor binding transcription factor activity","type":"exact"}],"termid":"GO:0001082"}


id: PBO:0017588
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial electron transfer flavoprotein-ubiquinone oxidoreductase Cir2 (predicted)","termid":"PBO:0017588"}


id: GO:0018675
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: (-)-limonene + NADPH + H+ + O2 = (-)-trans-carveol + NADP+ + H2O.","definition_xrefs":["EC:1.14.14.51"],"direct_ancestors":[{"relation_name":"is_a","term_name":"limonene monooxygenase activity","termid":"GO:0019113"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0016491","GO:0003824"],"is_obsolete":false,"name":"(S)-limonene 6-monooxygenase activity","secondary_identifiers":["RHEA:17945","MetaCyc:--LIMONENE-6-MONOOXYGENASE-RXN","UM-BBD_reactionID:r0713"],"synonyms":[{"name":"(-)-limonene 6-hydroxylase activity","type":"related"},{"name":"(-)-limonene 6-monooxygenase activity","type":"exact"},{"name":"(-)-limonene,NADPH:oxygen oxidoreductase (6-hydroxylating) activity","type":"related"},{"name":"(S)-limonene,NADPH:oxygen oxidoreductase (6-hydroxylating)","type":"related"},{"name":"limonene 6-hydroxylase activity","type":"exact"}],"termid":"GO:0018675"}


id: PBO:0030032
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_negative_regulation_of_transcription_by_glucose","termid":"PBO:0030032"}


id: GO:0033228
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The directed movement of cysteine from inside of a cell, across the plasma membrane and into the extracellular region.","definition_xrefs":["GOC:mlg"],"direct_ancestors":[{"relation_name":"is_a","term_name":"amino acid export across plasma membrane","termid":"GO:0032973"},{"relation_name":"is_a","term_name":"cysteine transmembrane transport","termid":"GO:1903712"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0055085"}],"interesting_parent_ids":["GO:0006810","GO:0055085","GO:0008150","GO:0051179"],"is_obsolete":false,"name":"cysteine export across plasma membrane","synonyms":[{"name":"cysteine export","type":"broad"}],"termid":"GO:0033228"}


id: GO:0090524
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: NADH + H+ + 2 ferricytochrome b(5) = NAD+ + 2 ferrocytochrome b(5).","definition_xrefs":["GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cytochrome-b5 reductase activity, acting on NAD(P)H","termid":"GO:0004128"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016491"],"is_obsolete":false,"name":"cytochrome-b5 reductase activity, acting on NADH","synonyms":[{"name":"cytochrome b5 reductase activity","type":"broad"}],"termid":"GO:0090524"}


id: FYPO:0003661
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the occurrence of double-strand break repair via nonhomologous end joining (NHEJ) is abnormal. NHEJ is the repair of double-strand breaks in DNA in which the two broken ends are rejoined with little or no sequence complementarity.","definition_xrefs":["GO:0006303","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal double-strand break repair during vegetative growth","termid":"FYPO:0000777"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000293"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000298"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0000298","FYPO:0005447","FYPO:0001985","FYPO:0000002","FYPO:0000293"],"is_obsolete":false,"name":"abnormal double-strand break repair via nonhomologous end joining","synonyms":[{"name":"abnormal NHEJ","type":"exact"},{"name":"abnormal double-strand break repair via nonhomologous end joining during mitotic cell cycle","type":"related"},{"name":"abnormal double-strand break repair via nonhomologous end joining during vegetative growth","type":"exact"},{"name":"abnormal nonhomologous end joining","type":"exact"}],"termid":"FYPO:0003661"}


id: PR:G2TRL5
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- new2 gene.","definition_xrefs":["PRO:DNx","UniProtKB:G2TRL5"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized protein new2 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC1805.18","synonyms":[{"name":"Spom972h-new2","type":"exact"}],"termid":"PR:G2TRL5"}


id: PATO:0002077
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A spatial quality inhering in a bearer by virtue of the bearer's being positioned with multiple entities of the same type above and below.","definition_xrefs":["PATOC:CJM"],"direct_ancestors":[{"relation_name":"is_a","term_name":"position","termid":"PATO:0000140"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"stacked","termid":"PATO:0002077"}


id: GO:1904425
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of GTP binding.","definition_xrefs":["PMID:21454546","GO_REF:0000059","GOC:TermGenie","PMID:19066305"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of binding","termid":"GO:0051100"},{"relation_name":"is_a","term_name":"regulation of GTP binding","termid":"GO:1904424"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of GTP binding","synonyms":[{"name":"down regulation of GTP binding","type":"exact"},{"name":"down-regulation of GTP binding","type":"exact"},{"name":"downregulation of GTP binding","type":"exact"},{"name":"inhibition of GTP binding","type":"narrow"}],"termid":"GO:1904425"}


id: GO:0018607
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 1-indanone + NADPH + 1/2 O2 = NADP+ + 3,4-dihydrocoumarin.","definition_xrefs":["UM-BBD_reactionID:r0417"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of two atoms of oxygen into one donor","termid":"GO:0016708"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016491"],"is_obsolete":false,"name":"1-indanone monooxygenase activity","secondary_identifiers":["EC:1.14.12.-"],"termid":"GO:0018607"}


id: PBO:0075836
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"somatostatin receptor 4","termid":"PBO:0075836"}


id: PR:O94691
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- jmj3 gene.","definition_xrefs":["UniProtKB:O94691","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"lid2 complex component jmj3 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC83.07","synonyms":[{"name":"Lid2C component jmj3 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-jmj3","type":"exact"}],"termid":"PR:O94691"}


id: FYPO:0002305
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of RNA measured in a cell during a cellular response to non-ionic osmotic stress is lower than normal. Total RNA or a specific RNA may be affected.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased RNA level during cellular response to osmotic stress","termid":"FYPO:0002286"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"output_of","termid":"FYPO:0006551"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000002","FYPO:0005447","FYPO:0001320","FYPO:0006551"],"is_obsolete":false,"name":"decreased RNA level during cellular response to non-ionic osmotic stress","synonyms":[{"name":"decreased RNA level during cellular response to non-ionic osmotic stress during mitotic cell cycle","type":"related"},{"name":"decreased RNA level during cellular response to non-ionic osmotic stress during vegetative growth","type":"exact"},{"name":"decreased mRNA level during cellular response to non-ionic osmotic stress","type":"narrow"},{"name":"decreased transcript level during cellular response to non-ionic osmotic stress","type":"exact"},{"name":"reduced RNA level during cellular response to non-ionic osmotic stress","type":"exact"}],"termid":"FYPO:0002305"}


id: PBO:0039468
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ankyrin repeat domain 16","termid":"PBO:0039468"}


id: PBO:0038435
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"arylacetamide deacetylase like 2","termid":"PBO:0038435"}


id: PBO:0038812
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ADAM metallopeptidase domain 19","termid":"PBO:0038812"}


id: GO:0033000
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A protein complex composed of an Fc-gamma RI alpha chain and an Fc-epsilon RI gamma chain dimer with or without additional signaling components. The complex functions primarily as an activating receptor for IgG.","definition_xrefs":["GOC:add","PMID:11244038","ISBN:0781735149","PMID:12413532"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Fc receptor complex","termid":"GO:0032997"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0005886"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0032991","GO:0005886","GO:0005575"],"is_obsolete":false,"name":"Fc-gamma receptor I complex","synonyms":[{"name":"FcgRI complex","type":"exact"},{"name":"IgG receptor complex","type":"broad"},{"name":"immunoglobulin G receptor complex","type":"broad"}],"termid":"GO:0033000"}


id: GO:1902958
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of mitochondrial electron transport, NADH to ubiquinone.","definition_xrefs":["GO_REF:0000058","PMID:23530063","GOC:dph","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of cellular respiration","termid":"GO:1901857"},{"relation_name":"is_a","term_name":"regulation of mitochondrial electron transport, NADH to ubiquinone","termid":"GO:1902956"},{"relation_name":"positively_regulates","term_name":"mitochondrial electron transport, NADH to ubiquinone","termid":"GO:0006120"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0006091"},{"rel_name":"positively_regulates","termid":"GO:0006091"}],"interesting_parent_ids":["GO:0008150","GO:0006091"],"is_obsolete":false,"name":"positive regulation of mitochondrial electron transport, NADH to ubiquinone","synonyms":[{"name":"activation of complex I (NADH to ubiquinone)","type":"related"},{"name":"activation of mitochondrial electron transport, NADH to ubiquinone","type":"narrow"},{"name":"activation of oxidative phosphorylation, NADH to ubiquinone","type":"narrow"},{"name":"positive regulation of complex I (NADH to ubiquinone)","type":"related"},{"name":"positive regulation of oxidative phosphorylation, NADH to ubiquinone","type":"exact"},{"name":"up regulation of complex I (NADH to ubiquinone)","type":"related"},{"name":"up regulation of mitochondrial electron transport, NADH to ubiquinone","type":"exact"},{"name":"up regulation of oxidative phosphorylation, NADH to ubiquinone","type":"exact"},{"name":"up-regulation of complex I (NADH to ubiquinone)","type":"related"},{"name":"up-regulation of mitochondrial electron transport, NADH to ubiquinone","type":"exact"},{"name":"up-regulation of oxidative phosphorylation, NADH to ubiquinone","type":"exact"},{"name":"upregulation of complex I (NADH to ubiquinone)","type":"related"},{"name":"upregulation of mitochondrial electron transport, NADH to ubiquinone","type":"exact"},{"name":"upregulation of oxidative phosphorylation, NADH to ubiquinone","type":"exact"}],"termid":"GO:1902958"}


id: GO:0035493
data:
  {"annotated_genes":["SJAG_03403"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[75065],"is_not":false,"summary":null,"term":"GO:0035493"}]},"cv_name":"biological_process","definition":"The aggregation, arrangement and bonding together of a set of components to form a SNARE complex, a protein complex involved in membrane fusion; a stable ternary complex consisting of a four-helix bundle, usually formed from one R-SNARE and three Q-SNAREs with an ionic layer sandwiched between hydrophobic layers.","definition_xrefs":["GOC:rb","PMID:10872468"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein-containing complex assembly","termid":"GO:0065003"},{"relation_name":"part_of","term_name":"vesicle fusion","termid":"GO:0006906"}],"gene_count":1,"genes_by_uniquename":{"SJAG_03403":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0065003"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0016192"},{"rel_name":"part_of","termid":"GO:0044085"},{"rel_name":"part_of","termid":"GO:0061024"},{"rel_name":"part_of","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0016192","GO:0065003","GO:0008150","GO:0044085","GO:0006810","GO:0061024"],"is_obsolete":false,"name":"SNARE complex assembly","references_by_uniquename":{"PMID:21873635":null},"termid":"GO:0035493","terms_by_termid":{"GO:0035493":null}}


id: PATO:0002269
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A structural quality of the collection or massing of one physical object within another physical object.","definition_xrefs":["PATOC:CVC"],"direct_ancestors":[{"relation_name":"is_a","term_name":"structure","termid":"PATO:0000141"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"accumulation","synonyms":[{"name":"pooled","type":"related"}],"termid":"PATO:0002269"}


id: FYPO:0001031
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the number of sites of single-strand breaks in DNA is greater than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal cellular physical quality phenotype during vegetative growth","termid":"FYPO:0004639"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0001985","FYPO:0000002"],"is_obsolete":false,"name":"accumulation of single-strand break sites","synonyms":[{"name":"accumulation of single-strand break sites during mitotic cell cycle","type":"related"},{"name":"accumulation of single-strand break sites during vegetative growth","type":"exact"},{"name":"increased number of single-strand break sites during vegetative growth","type":"exact"}],"termid":"FYPO:0001031"}


id: GO:0004711
data:
  {"annotated_genes":["SJAG_01047"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[112218],"is_not":false,"summary":null,"term":"GO:0004711"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: ribosomal protein S6 + ATP = ribosomal protein S6 phosphate + ATP.","definition_xrefs":["GOC:mah","PMID:9822608"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein serine/threonine kinase activity","termid":"GO:0004674"}],"gene_count":1,"genes_by_uniquename":{"SJAG_01047":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0140096"},{"rel_name":"is_a","termid":"GO:0016301"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0004672"}],"interesting_parent_ids":["GO:0003824","GO:0016740","GO:0016301","GO:0140096","GO:0003674","GO:0004672"],"is_obsolete":false,"name":"ribosomal protein S6 kinase activity","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0004711","terms_by_termid":{"GO:0004711":null}}


id: GO:0031204
data:
  {"annotated_genes":["SJAG_02208","SJAG_02330","SJAG_03396","SJAG_02354","SJAG_00959","SJAG_02588","SJAG_00064"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[72936,72983,73388,78827,92871,93572,103622],"is_not":false,"summary":null,"term":"GO:0031204"}]},"cv_name":"biological_process","definition":"The process in which a protein translocates through the ER membrane posttranslationally.","definition_xrefs":["PMID:12518317","PMID:8707814"],"direct_ancestors":[{"relation_name":"is_a","term_name":"intracellular protein transmembrane transport","termid":"GO:0065002"},{"relation_name":"part_of","term_name":"post-translational protein targeting to endoplasmic reticulum membrane","termid":"GO:0006620"}],"gene_count":7,"genes_by_uniquename":{"SJAG_00064":null,"SJAG_00959":null,"SJAG_02208":null,"SJAG_02330":null,"SJAG_02354":null,"SJAG_02588":null,"SJAG_03396":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0006605"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0055085"},{"rel_name":"is_a","termid":"GO:0051179"}],"interesting_parent_ids":["GO:0051179","GO:0006605","GO:0006810","GO:0008150","GO:0055085"],"is_obsolete":false,"name":"post-translational protein targeting to membrane, translocation","references_by_uniquename":{"GO_REF:0000107":null,"PMID:21873635":null},"synonyms":[{"name":"posttranslational protein membrane targeting, translocation","type":"exact"},{"name":"posttranslational protein targeting to membrane, translocation","type":"exact"},{"name":"protein translocation during posttranslational protein targeting to membrane","type":"exact"}],"termid":"GO:0031204","terms_by_termid":{"GO:0031204":null}}


id: PATO:0000631
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A positional quality inhering in a bearer by virtue of the bearer's being stretched out and lying at full length along the ground.","definition_xrefs":["thefreedictionary.com:thefreedictionary.com"],"direct_ancestors":[{"relation_name":"is_a","term_name":"position","termid":"PATO:0000140"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"prostrate","termid":"PATO:0000631"}


id: GO:0009093
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of cysteine, 2-amino-3-mercaptopropanoic acid.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"sulfur amino acid catabolic process","termid":"GO:0000098"},{"relation_name":"is_a","term_name":"cysteine metabolic process","termid":"GO:0006534"},{"relation_name":"is_a","term_name":"amino acid catabolic process","termid":"GO:0009063"},{"relation_name":"is_a","term_name":"alpha-amino acid catabolic process","termid":"GO:1901606"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006790"},{"rel_name":"is_a","termid":"GO:0044248"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0006520"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0044248","GO:0044281","GO:0006790","GO:0006520"],"is_obsolete":false,"name":"cysteine catabolic process","secondary_identifiers":["Wikipedia:Cysteine"],"synonyms":[{"name":"cysteine breakdown","type":"exact"},{"name":"cysteine catabolism","type":"exact"},{"name":"cysteine degradation","type":"exact"}],"termid":"GO:0009093"}


id: FYPO:0007555
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A phenotype observed in the vegetative growth phase of the life cycle in which cells show increased sensitivity to econazole. Cells stop growing (and may die) at a concentration of econazole that allows wild type cells to grow.","definition_xrefs":["PomBase:mah","PMID:33223513"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased sensitivity to chemical during vegetative growth","termid":"FYPO:0000127"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0002683"},{"rel_name":"is_a","termid":"FYPO:0000139"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000003"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0002683","FYPO:0000139","FYPO:0005447","FYPO:0001985","FYPO:0000003"],"is_obsolete":false,"name":"sensitive to econazole","synonyms":[{"name":"hypersensitive to econazole","type":"exact"},{"name":"sensitive to ECZ","type":"exact"},{"name":"sensitive to econazole during mitotic cell cycle","type":"related"},{"name":"sensitive to econazole during vegetative growth","type":"exact"}],"termid":"FYPO:0007555"}


id: GO:0070313
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A protein complex formed by the association of RGS6, a negative regulator of heterotrimeric G protein signaling, with the DMAP1-Dnmt1 transcriptional repressor complex; in the complex, RGS6 inhibits the transcriptional repressor activity of DMAP1.","definition_xrefs":["GOC:mah","PMID:14734556"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nuclear protein-containing complex","termid":"GO:0140513"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0005634"}],"interesting_parent_ids":["GO:0005575","GO:0005634","GO:0032991"],"is_obsolete":false,"name":"RGS6-DNMT1-DMAP1 complex","termid":"GO:0070313"}


id: PBO:0000770
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"60S ribosomal protein L38 (predicted)","termid":"PBO:0000770"}


id: PBO:0036523
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cell surface glycoprotein, galactose-specific flocculin Gsf2","termid":"PBO:0036523"}


id: PBO:0048955
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"GOT2 pseudogene 6","termid":"PBO:0048955"}


id: GO:0019198
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Combining with a signal and transmitting the signal from one side of the membrane to the other to initiate a change in cell activity by catalysis of the reaction: a phosphoprotein + H2O = a protein + phosphate.","definition_xrefs":["GOC:hjd"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phosphoprotein phosphatase activity","termid":"GO:0004721"},{"relation_name":"is_a","term_name":"transmembrane signaling receptor activity","termid":"GO:0004888"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0004721"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0038023"},{"rel_name":"is_a","termid":"GO:0140096"},{"rel_name":"is_a","termid":"GO:0016788"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016787"}],"interesting_parent_ids":["GO:0004721","GO:0038023","GO:0016788","GO:0003674","GO:0140096","GO:0003824","GO:0016787"],"is_obsolete":false,"name":"transmembrane receptor protein phosphatase activity","termid":"GO:0019198"}


id: PBO:0064598
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"POU class 2 homeobox 1","termid":"PBO:0064598"}


id: GO:0070771
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A protein complex that consists of an alphaIIb-beta3 integrin complex bound to the cell surface antigen CD47 and the kinase c-Src.","definition_xrefs":["PMID:9169439"],"direct_ancestors":[{"relation_name":"is_a","term_name":"plasma membrane protein complex","termid":"GO:0098797"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005886"},{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0032991","GO:0005886","GO:0005575"],"is_obsolete":false,"name":"alphaIIb-beta3 integrin-CD47-Src complex","synonyms":[{"name":"ITGA2b-ITGB3-CD47-SRC complex","type":"narrow"}],"termid":"GO:0070771"}


id: GO:0047627
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 5'-adenylyl sulfate + H2O = AMP + 2 H+ + sulfate.","definition_xrefs":["EC:3.6.2.1","RHEA:17041"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hydrolase activity, acting on acid anhydrides, in sulfonyl-containing anhydrides","termid":"GO:0016819"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016787"}],"interesting_parent_ids":["GO:0003824","GO:0016787","GO:0003674"],"is_obsolete":false,"name":"adenylylsulfatase activity","secondary_identifiers":["KEGG_REACTION:R00531","MetaCyc:ADENYLYLSULFATASE-RXN"],"synonyms":[{"name":"adenosine 5-phosphosulfate sulfohydrolase activity","type":"related"},{"name":"adenylylsulfate sulfohydrolase activity","type":"related"},{"name":"adenylylsulphatase activity","type":"exact"}],"termid":"GO:0047627"}


id: PBO:0109610
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glycolysis associated regulator of LDHA post-transcriptional modification 1","termid":"PBO:0109610"}


id: GO:0070746
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to interleukin-35.","definition_xrefs":["GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cytokine binding","termid":"GO:0019955"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0005515"}],"interesting_parent_ids":["GO:0005515","GO:0005488","GO:0003674"],"is_obsolete":false,"name":"interleukin-35 binding","synonyms":[{"name":"IL-35 binding","type":"exact"}],"termid":"GO:0070746"}


id: PBO:0030961
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_histone_H3-K9_trimethylation_at_centromere_inner_repeat","termid":"PBO:0030961"}


id: GO:0061642
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which a neuron growth cone is directed to a specific target site in response to an attractive chemical signal.","definition_xrefs":["GOC:dph","GOC:krc"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive chemotaxis","termid":"GO:0050918"},{"relation_name":"part_of","term_name":"axon guidance","termid":"GO:0007411"},{"relation_name":"part_of","term_name":"cellular response to chemical stimulus","termid":"GO:0070887"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"chemoattraction of axon","termid":"GO:0061642"}


id: FYPO:0007079
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which the initial release of duplicated spindle pole bodies that occurs as part of the second meiotic nuclear division, is normal (i.e. indistinguishable from wild type).","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal cellular component organization","termid":"FYPO:0006003"},{"relation_name":"is_a","term_name":"normal meiotic cell cycle process","termid":"FYPO:0007078"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000257"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0000257"],"is_obsolete":false,"name":"normal initial meiotic spindle pole body separation in meiosis II","synonyms":[{"name":"normal initial meiotic spindle pole body separation in second meiotic nuclear division","type":"exact"},{"name":"normal initial mitotic SPB separation in meiosis II","type":"exact"},{"name":"normal initial spindle pole body separation at meiosis II","type":"exact"}],"termid":"FYPO:0007079"}


id: GO:0014711
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of branchiomeric skeletal muscle development. Branchiomeric skeletal muscle development is the process whose specific outcome is the progression of the branchiomeric skeletal muscle over time, from its formation to the mature structure.","definition_xrefs":["GOC:mtg_muscle"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of muscle organ development","termid":"GO:0048634"},{"relation_name":"is_a","term_name":"regulation of skeletal muscle tissue development","termid":"GO:0048641"},{"relation_name":"regulates","term_name":"branchiomeric skeletal muscle development","termid":"GO:0014707"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of branchiomeric skeletal muscle development","termid":"GO:0014711"}


id: PBO:0077241
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transmembrane and coiled-coil domains 2","termid":"PBO:0077241"}


id: PBO:0073141
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SEC22 homolog B4, pseudogene","termid":"PBO:0073141"}


id: FYPO:0005452
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which one of two different alleles of a gene is lost more frequently than normal after a double-strand break forms nearby.","definition_xrefs":["PomBase:mah","PMID:17724078"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal vegetative cell phenotype","termid":"FYPO:0003755"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0001985","FYPO:0000002"],"is_obsolete":false,"name":"increased break-induced loss of heterozygosity","synonyms":[{"name":"increased break-induced loss of heterozygosity during mitotic cell cycle","type":"related"},{"name":"increased break-induced loss of heterozygosity during vegetative growth","type":"exact"}],"termid":"FYPO:0005452"}


id: PBO:0045606
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"double homeobox 4 like 17 (pseudogene)","termid":"PBO:0045606"}


id: GO:0044416
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The activation by an organism of the defense response of the host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction.","definition_xrefs":["GOC:cc"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of defense response","termid":"GO:0031349"},{"relation_name":"is_a","term_name":"symbiont-mediated perturbation of host defense response","termid":"GO:0052031"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"induction by symbiont of host defense response","secondary_identifiers":["GO:0052509","GO:0052510","GO:0052251"],"synonyms":[{"name":"activation by symbiont of host defense response","type":"exact"},{"name":"activation of host defense response","type":"exact"},{"name":"induction by organism of defense response of other organism involved in symbiotic interaction","type":"broad"},{"name":"positive regulation by organism of defense response of other organism involved in symbiotic interaction","type":"broad"},{"name":"positive regulation by symbiont of host defense response","type":"related"},{"name":"stimulation by symbiont of host defense response","type":"related"},{"name":"up regulation by symbiont of host defense response","type":"related"},{"name":"up-regulation by symbiont of host defense response","type":"related"},{"name":"upregulation by symbiont of host defense response","type":"related"}],"termid":"GO:0044416"}


id: FYPO:0000730
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A spindle phenotype in which the spindle is longer than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal spindle morphology","termid":"FYPO:0003607"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000120"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0002399"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"output_of","termid":"FYPO:0000054"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000002","FYPO:0005447","FYPO:0000054","FYPO:0000120","FYPO:0002399"],"is_obsolete":false,"name":"long spindle","synonyms":[{"name":"elongated spindle","type":"exact"},{"name":"increased spindle length","type":"exact"},{"name":"long spindles","type":"exact"}],"termid":"FYPO:0000730"}


id: GO:0006328
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. (Was not defined before being made obsolete).","definition_xrefs":["GOC:go_curators"],"gene_count":0,"genotype_count":0,"name":"obsolete AT binding (obsolete GO:0006328)","synonyms":[{"name":"AT binding","type":"exact"}],"termid":"GO:0006328"}


id: GO:0035863
data:
  {"annotated_genes":["SJAG_04487"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[94491],"is_not":false,"summary":null,"term":"GO:0035863"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of dITP, a deoxyinosine phosphate compound having a triphosphate group at the 5'-position.","definition_xrefs":["GOC:dgf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"purine deoxyribonucleotide catabolic process","termid":"GO:0009155"},{"relation_name":"is_a","term_name":"purine deoxyribonucleoside triphosphate catabolic process","termid":"GO:0009217"},{"relation_name":"is_a","term_name":"dITP metabolic process","termid":"GO:0035862"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04487":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0055086"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044248"}],"interesting_parent_ids":["GO:0044248","GO:0044281","GO:0055086","GO:0008150"],"is_obsolete":false,"name":"dITP catabolic process","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"2'-Deoxyinosine 5'-triphosphate catabolic process","type":"exact"},{"name":"2'-Deoxyinosine-5'-triphosphate catabolic process","type":"exact"},{"name":"dITP breakdown","type":"exact"},{"name":"dITP catabolism","type":"exact"},{"name":"dITP degradation","type":"exact"},{"name":"deoxyinosine 5'-triphosphate catabolic process","type":"exact"},{"name":"deoxyinosine triphosphate (2'-deoxyinosine 5'-triphosphate) catabolic process","type":"exact"}],"termid":"GO:0035863","terms_by_termid":{"GO:0035863":null}}


id: RO:0002162
data:
  {"annotation_feature_type":"gene","cv_name":"relationship","definition":"x is in taxon y if an only if y is an organism, and the relationship between x and y is one of: part of (reflexive), developmentally preceded by, derives from, secreted by, expressed.","direct_ancestors":[{"relation_name":"is_a","term_name":"evolutionarily_related_to","termid":"RO:0002320"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"in_taxon","termid":"RO:0002162"}


id: PATO:0000343
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0000343 gametophyte incompatible value (obsolete PATO:0000343)","termid":"PATO:0000343"}


id: PBO:0072460
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein S29 pseudogene 24","termid":"PBO:0072460"}


id: PBO:0048681
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"golgi glycoprotein 1","termid":"PBO:0048681"}


id: FYPO:0006139
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of 2-myristoylglycerophosphocholine measured in a cell is higher than normal.","definition_xrefs":["PomBase:mah","PMID:28667014"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased phospholipid level","termid":"FYPO:0001288"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0000002","FYPO:0001985"],"is_obsolete":false,"name":"increased cellular 2-myristoylglycerophosphocholine level","synonyms":[{"name":"increased 2-myristoylglycerophosphocholine accumulation","type":"related"},{"name":"increased cellular 2-myristoylglycerophosphocholine level during mitotic cell cycle","type":"related"},{"name":"increased cellular 2-myristoylglycerophosphocholine level during vegetative growth","type":"exact"},{"name":"increased cellular 2-tetradecanoyl-sn-glycero-3-phosphocholine level","type":"exact"}],"termid":"FYPO:0006139"}


id: PBO:0049973
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"HIG1 hypoxia inducible domain family member 1B","termid":"PBO:0049973"}


id: MOD:01199
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-arginine residue to an N-heptosyl-L-arginine.","definition_xrefs":["Unimod:490#R"],"direct_ancestors":[{"relation_name":"is_a","term_name":"heptosylated residue","termid":"MOD:00925"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:00693"}],"interesting_parent_ids":["MOD:00693"],"is_obsolete":false,"name":"N-heptosyl-L-arginine","synonyms":[{"name":"Hep","type":"related"},{"name":"Heptose","type":"related"}],"termid":"MOD:01199"}


id: PBO:0050262
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"high mobility group nucleosomal binding domain 2 pseudogene 40","termid":"PBO:0050262"}


id: PBO:0013748
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"C-4 methylsterol oxidase Erg25 (predicted)","termid":"PBO:0013748"}


id: GO:0098780
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) in response to the depolarization of one or more mitochondria.","definition_xrefs":["GOC:dos"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular response to stress","termid":"GO:0033554"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"response to mitochondrial depolarisation","termid":"GO:0098780"}


id: FYPO:0003808
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A physical cellular phenotype observed in the vegetative growth phase of the life cycle in which the movement of mitochondria is normal (i.e. indistinguishable from wild type). Mitochondria normally form tips that grow and shrink stochastically.","definition_xrefs":["PMID:19373772","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal mitochondrion","termid":"FYPO:0006034"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000257"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0000257","FYPO:0000002"],"is_obsolete":false,"name":"normal mitochondrial motility","synonyms":[{"name":"normal mitochondrial dynamics","type":"exact"},{"name":"normal mitochondrial mobility","type":"exact"},{"name":"normal mitochondrial motility during mitotic cell cycle","type":"exact"},{"name":"normal mitochondrial motility during vegetative growth","type":"exact"},{"name":"normal nuclear membrane morphology","type":"narrow"}],"termid":"FYPO:0003808"}


id: PBO:0069669
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 946, pseudogene","termid":"PBO:0069669"}


id: PBO:0070668
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L7 pseudogene 39","termid":"PBO:0070668"}


id: GO:1904915
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of establishment of the localization of a protein-containing macromolecular complex to a telomere.","definition_xrefs":["GOC:BHF_telomere","GOC:TermGenie","GOC:rph","PMID:26586433","GO_REF:0000058","GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of biological process","termid":"GO:0048518"},{"relation_name":"is_a","term_name":"regulation of establishment of protein-containing complex localization to telomere","termid":"GO:1904913"},{"relation_name":"positively_regulates","term_name":"establishment of protein-containing complex localization to telomere","termid":"GO:0097695"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of establishment of protein-containing complex localization to telomere","synonyms":[{"name":"activation of establishment of macromolecular complex localisation to telomere","type":"narrow"},{"name":"activation of establishment of macromolecular complex localization to telomere","type":"narrow"},{"name":"positive regulation of establishment of macromolecular complex localisation to telomere","type":"exact"},{"name":"positive regulation of establishment of macromolecular complex localization to telomere","type":"related"},{"name":"up regulation of establishment of macromolecular complex localisation to telomere","type":"exact"},{"name":"up regulation of establishment of macromolecular complex localization to telomere","type":"exact"},{"name":"up-regulation of establishment of macromolecular complex localisation to telomere","type":"exact"},{"name":"up-regulation of establishment of macromolecular complex localization to telomere","type":"exact"},{"name":"upregulation of establishment of macromolecular complex localisation to telomere","type":"exact"},{"name":"upregulation of establishment of macromolecular complex localization to telomere","type":"exact"}],"termid":"GO:1904915"}


id: GO:0071486
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a high light intensity stimulus.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to high light intensity","termid":"GO:0009644"},{"relation_name":"is_a","term_name":"cellular response to light intensity","termid":"GO:0071484"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cellular response to high light intensity","termid":"GO:0071486"}


id: GO:1903117
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that modulates the frequency, rate or extent of actin filament organization involved in cytokinetic actomyosin contractile ring assembly.","definition_xrefs":["GO_REF:0000058","PMID:24798735","GOC:TermGenie"],"gene_count":0,"genotype_count":0,"name":"obsolete regulation of actin filament organization involved in cytokinetic actomyosin contractile ring assembly (obsolete GO:1903117)","synonyms":[{"name":"regulation of actin filament organisation of constriction ring assembly","type":"related"},{"name":"regulation of actin filament organisation of contractile ring assembly","type":"exact"},{"name":"regulation of actin filament organisation of cytokinesis, actomyosin contractile ring assembly","type":"exact"},{"name":"regulation of actin filament organisation of cytokinesis, actomyosin contractile ring formation","type":"related"},{"name":"regulation of actin filament organisation of cytokinesis, actomyosin ring biosynthesis","type":"related"},{"name":"regulation of actin filament organisation of cytokinesis, actomyosin ring formation","type":"related"},{"name":"regulation of actin filament organisation of cytokinesis, contractile ring assembly","type":"related"},{"name":"regulation of actin filament organization of constriction ring assembly","type":"related"},{"name":"regulation of actin filament organization of contractile ring assembly","type":"exact"},{"name":"regulation of actin filament organization of cytokinesis, actomyosin contractile ring assembly","type":"exact"},{"name":"regulation of actin filament organization of cytokinesis, actomyosin contractile ring formation","type":"related"},{"name":"regulation of actin filament organization of cytokinesis, actomyosin ring biosynthesis","type":"related"},{"name":"regulation of actin filament organization of cytokinesis, actomyosin ring formation","type":"related"},{"name":"regulation of actin filament organization of cytokinesis, contractile ring assembly","type":"related"},{"name":"regulation of regulation of actin filament localization of constriction ring assembly","type":"related"},{"name":"regulation of regulation of actin filament localization of contractile ring assembly","type":"related"},{"name":"regulation of regulation of actin filament localization of cytokinesis, actomyosin contractile ring assembly","type":"related"},{"name":"regulation of regulation of actin filament localization of cytokinesis, actomyosin contractile ring formation","type":"related"},{"name":"regulation of regulation of actin filament localization of cytokinesis, actomyosin ring biosynthesis","type":"related"},{"name":"regulation of regulation of actin filament localization of cytokinesis, actomyosin ring formation","type":"related"},{"name":"regulation of regulation of actin filament localization of cytokinesis, contractile ring assembly","type":"related"}],"termid":"GO:1903117"}


id: GO:0100006
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any transcription from RNA polymerase II promoter process that positively regulates sulfite transport.","definition_xrefs":["GOC:obol","GOC:cjm"],"gene_count":0,"genotype_count":0,"name":"obsolete positive regulation of sulfite transport by transcription from RNA polymerase II promoter (obsolete GO:0100006)","termid":"GO:0100006"}


id: PR:O94688
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- apc15 gene.","definition_xrefs":["UniProtKB:O94688","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"anaphase-promoting complex subunit 15 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC83.04","synonyms":[{"name":"20S cyclosome/APC complex protein apc15 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-apc15","type":"exact"}],"termid":"PR:O94688"}


id: PR:O13685
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A ubiquitin-conjugating enzyme E2 N that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO02194","PANTHER:PTHR24067:SF30","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ubiquitin-conjugating enzyme E2 13 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC11E3.04c","secondary_identifiers":["UniProtKB:O13685"],"synonyms":[{"name":"E2 ubiquitin-conjugating enzyme 13 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-UBE2N","type":"exact"},{"name":"ubiquitin carrier protein 13 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"ubiquitin-protein ligase 13 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:O13685"}


id: PBO:0088024
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"U1 snRNP protein involved in splicing; required for U1 snRNP biogenesis; contains multiple tetriatricopeptide repeats","termid":"PBO:0088024"}


id: PBO:0042443
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CDC42 effector protein 3","termid":"PBO:0042443"}


id: GO:0050587
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: chloride + O2 = chlorite.","definition_xrefs":["RHEA:21404","EC:1.13.11.49"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen","termid":"GO:0016702"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003824","GO:0016491","GO:0003674"],"is_obsolete":false,"name":"chlorite O2-lyase activity","secondary_identifiers":["GO:0030065","MetaCyc:1.13.11.49-RXN","KEGG_REACTION:R05721","UM-BBD_reactionID:r0982"],"synonyms":[{"name":"chloride:oxygen oxidoreductase activity","type":"related"},{"name":"chlorite dismutase activity","type":"related"}],"termid":"GO:0050587"}


id: GO:0003801
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. (Was not defined before being made obsolete).","definition_xrefs":["GOC:ai"],"gene_count":0,"genotype_count":0,"name":"obsolete blood coagulation factor activity (obsolete GO:0003801)","synonyms":[{"name":"blood coagulation factor activity","type":"exact"}],"termid":"GO:0003801"}


id: PBO:0005723
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nucleoporin Nup186","termid":"PBO:0005723"}


id: PBO:0043121
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cytokine induced apoptosis inhibitor 1 pseudogene","termid":"PBO:0043121"}


id: PBO:0004686
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"C2 domain protein Git1","termid":"PBO:0004686"}


id: GO:1905722
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of trypanothione biosynthetic process.","definition_xrefs":["GO_REF:0000058","PMID:18949025","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of cellular biosynthetic process","termid":"GO:0031326"},{"relation_name":"is_a","term_name":"regulation of sulfur metabolic process","termid":"GO:0042762"},{"relation_name":"is_a","term_name":"regulation of nitrogen compound metabolic process","termid":"GO:0051171"},{"relation_name":"regulates","term_name":"trypanothione biosynthetic process","termid":"GO:0019342"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0006790"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006790","GO:0008150"],"is_obsolete":false,"name":"regulation of trypanothione biosynthetic process","synonyms":[{"name":"regulation of trypanothione anabolism","type":"exact"},{"name":"regulation of trypanothione biosynthesis","type":"exact"},{"name":"regulation of trypanothione formation","type":"exact"},{"name":"regulation of trypanothione synthesis","type":"exact"}],"termid":"GO:1905722"}


id: PBO:0084118
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Heme A:farnesyltransferase; catalyzes first step in conversion of protoheme to heme A prosthetic group required for cytochrome c oxidase activity; human ortholog COX10 can complement yeast cox10 null mutant; human ortholog COX10 is associated with mitochondrial disorders","termid":"PBO:0084118"}


id: PATO:0005001
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A variability quality inhering in the bearer by virtue of the bearer having a variable number or count of an entity.","definition_xrefs":["PATOC:WD"],"direct_ancestors":[{"relation_name":"is_a","term_name":"variability","termid":"PATO:0001303"},{"relation_name":"towards","term_name":"amount","termid":"PATO:0000070"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"variability of count","synonyms":[{"name":"variable number","type":"related"}],"termid":"PATO:0005001"}


id: PBO:0003438
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"complexed with Cdc5 protein Cwf15","termid":"PBO:0003438"}


id: GO:1903585
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that stops, prevents or reduces the frequency, rate or extent of histone deubiquitination.","definition_xrefs":["GOC:TermGenie","PMID:24526689","GO_REF:0000058"],"gene_count":0,"genotype_count":0,"name":"obsolete negative regulation of histone deubiquitination (obsolete GO:1903585)","synonyms":[{"name":"down regulation of histone deubiquitination","type":"exact"},{"name":"down regulation of histone deubiquitinylation","type":"exact"},{"name":"down regulation of histone deubiquitylation","type":"exact"},{"name":"down-regulation of histone deubiquitination","type":"exact"},{"name":"down-regulation of histone deubiquitinylation","type":"exact"},{"name":"down-regulation of histone deubiquitylation","type":"exact"},{"name":"downregulation of histone deubiquitination","type":"exact"},{"name":"downregulation of histone deubiquitinylation","type":"exact"},{"name":"downregulation of histone deubiquitylation","type":"exact"},{"name":"inhibition of histone deubiquitination","type":"narrow"},{"name":"inhibition of histone deubiquitinylation","type":"narrow"},{"name":"inhibition of histone deubiquitylation","type":"narrow"},{"name":"negative regulation of histone deubiquitinylation","type":"exact"},{"name":"negative regulation of histone deubiquitylation","type":"exact"}],"termid":"GO:1903585"}


id: PBO:0087865
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Transcriptional activator of the basic leucine zipper (bZIP) family; required for transcription of genes involved in resistance to arsenic compounds; directly binds trivalent arsenic (As(III)) as does K. lactis ortholog, KIYAP8","termid":"PBO:0087865"}


id: GO:0021568
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of rhombomere 2 over time, from its formation to the mature structure. Rhombomeres are transverse segments of the developing rhombencephalon. Rhombomeres are lineage restricted, express different genes from one another, and adopt different developmental fates. Rhombomeres are numbered in anterior to posterior order.","definition_xrefs":["GOC:jid","GOC:curators","GOC:dgh","GOC:dph","GO_REF:0000021","GOC:cls"],"direct_ancestors":[{"relation_name":"is_a","term_name":"rhombomere development","termid":"GO:0021546"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"rhombomere 2 development","termid":"GO:0021568"}


id: PBO:0062446
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 7 subfamily E member 111F pseudogene","termid":"PBO:0062446"}


id: PR:Q9UUA2-2
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"An ATP-dependent DNA helicase pfh1 (Schizosaccharomyces pombe 972h-) that is a translation product of some mRNA giving rise to a protein with the amino acid sequence represented by UniProtKB:Q9UUA2-2.","definition_xrefs":["PRO:DNx","UniProtKB:Q9UUA2"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ATP-dependent DNA helicase pfh1 (Schizosaccharomyces pombe 972h-)","termid":"PR:Q9UUA2"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ATP-dependent DNA helicase pfh1 isoform Nuclear (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC1002.01","secondary_identifiers":["UniProtKB:Q9UUA2-2"],"synonyms":[{"name":"Spom972h-PIF1/iso:Nuclear","type":"exact"}],"termid":"PR:Q9UUA2-2"}


id: GO:0030319
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process involved in the maintenance of an internal steady state of divalent or trivalent inorganic anions at the level of a cell.","definition_xrefs":["GOC:mah","GOC:ai"],"gene_count":0,"genotype_count":0,"name":"obsolete cellular di-, tri-valent inorganic anion homeostasis (obsolete GO:0030319)","synonyms":[{"name":"cellular di-, tri-valent inorganic anion homeostasis","type":"exact"}],"termid":"GO:0030319"}


id: GO:0007399
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of nervous tissue over time, from its formation to its mature state.","definition_xrefs":["GOC:dgh"],"direct_ancestors":[{"relation_name":"is_a","term_name":"system development","termid":"GO:0048731"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"nervous system development","synonyms":[{"name":"pan-neural process","type":"related"}],"termid":"GO:0007399"}


id: GO:0031605
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"OBSOLETE. The subunits forming the outer ring of the core complex of a proteasome located in the endoplasmic reticulum of a cell.","definition_xrefs":["GOC:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete ER proteasome core complex, alpha-subunit complex (obsolete GO:0031605)","termid":"GO:0031605"}


id: PBO:0083002
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Damaged-DNA binding subunit of Nuclear Excision Repair Factor 2; recognizes and binds damaged DNA with Rad23p during nucleotide excision repair (NER); also involved with Rad23p in turnover of ubiquitylated proteins; Rad4p-Rad23p heterodimer binds to promoters of DNA damage response genes to repress their transcription in the absence of DNA damage; RAD4 and RAD51 pathways confer resistance to benzo[a]pyrene dihydrodiol","termid":"PBO:0083002"}


id: GO:0048084
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of establishment of the adult pattern of pigmentation in the cuticle of an organism.","definition_xrefs":["GOC:jid","GOC:mtg_sensu"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of chitin-based cuticle tanning","termid":"GO:0045801"},{"relation_name":"is_a","term_name":"positive regulation of cuticle pigmentation","termid":"GO:0048081"},{"relation_name":"is_a","term_name":"regulation of adult chitin-containing cuticle pigmentation","termid":"GO:0048082"},{"relation_name":"positively_regulates","term_name":"adult chitin-containing cuticle pigmentation","termid":"GO:0048085"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of adult chitin-containing cuticle pigmentation","synonyms":[{"name":"activation of adult chitin-containing cuticle pigmentation","type":"narrow"},{"name":"stimulation of adult chitin-containing cuticle pigmentation","type":"narrow"},{"name":"up regulation of adult chitin-containing cuticle pigmentation","type":"exact"},{"name":"up-regulation of adult chitin-containing cuticle pigmentation","type":"exact"},{"name":"upregulation of adult chitin-containing cuticle pigmentation","type":"exact"}],"termid":"GO:0048084"}


id: GO:0106003
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"Protein complex involved in modulation of signaling and synaptic function in the brain, predominantly in the cerebral cortex and hippocampus. Forms dimers and multimers of amyloid beta peptide 40 and peptide 42 (proteolytic cleavage products of amyloid beta A4 protein, also known as amyloid beta precursor protein). Mostly found in the extracellular space with a proportion occurring as membrane-bound species. Influences synaptic plasticity through various receptors, mediates dendritic spine loss leading to decreased synapse density, inhibits long-term potentiation (LTP) and enhances long-term depression (LTD). Soluble multimeric form is the main pathogenic species linked to Alzheimer's disease.","definition_xrefs":["GOC:bhm","PMID:18568035"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein-containing complex","termid":"GO:0032991"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0005575","GO:0032991"],"is_obsolete":false,"name":"amyloid-beta complex","synonyms":[{"name":"ADDL complex","type":"narrow"},{"name":"Abeta complex","type":"exact"},{"name":"Abeta-derived diffusible ligand complex","type":"narrow"},{"name":"amyloid beta complex","type":"exact"},{"name":"amyloid beta dimer","type":"narrow"},{"name":"amyloid beta heterodimer","type":"narrow"},{"name":"amyloid beta heterooligomer","type":"narrow"},{"name":"amyloid beta heterotrimer","type":"narrow"},{"name":"amyloid beta homodimer","type":"narrow"},{"name":"amyloid beta homooligomer","type":"narrow"},{"name":"amyloid beta homotrimer","type":"narrow"},{"name":"amyloid beta oligomer","type":"narrow"},{"name":"amyloid beta trimer","type":"narrow"},{"name":"amyloid-beta protein 40 complex","type":"narrow"},{"name":"amyloid-beta protein 40/42 complex","type":"narrow"},{"name":"amyloid-beta protein 42 complex","type":"narrow"},{"name":"beta amyloid complex","type":"exact"},{"name":"beta-amyloid complex","type":"exact"},{"name":"betaA complex","type":"exact"},{"name":"heterodimer of amyloid beta protein","type":"narrow"},{"name":"heterooligomer of amyloid beta protein","type":"narrow"},{"name":"heterotrimer of amyloid beta protein","type":"narrow"},{"name":"homodimer of amyloid beta protein","type":"narrow"},{"name":"homooligomer of amyloid beta protein","type":"narrow"},{"name":"homotrimer of amyloid beta protein","type":"narrow"}],"termid":"GO:0106003"}


id: GO:0018694
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: p-cymene + NADH + O2 = NAD+ + OH- + p-cumic alcohol.","definition_xrefs":["RHEA:51604"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on CH or CH2 groups","termid":"GO:0016725"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016491","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"p-cymene methyl hydroxylase activity","secondary_identifiers":["UM-BBD_reactionID:r0392","EC:1.14.15.25","MetaCyc:RXN-661"],"termid":"GO:0018694"}


id: FYPO:0002069
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A physical cellular phenotype in which a cell has a nucleus in an abnormal location. The normal location is at the midpoint of the long axis of the cell.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular physical quality phenotype","termid":"FYPO:0000136"},{"relation_name":"output_of","term_name":"abnormal nucleus positioning","termid":"FYPO:0000517"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"output_of","termid":"FYPO:0000138"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0000138","FYPO:0001985","FYPO:0000002","FYPO:0005447"],"is_obsolete":false,"name":"mislocalized nucleus","synonyms":[{"name":"abnormal nucleus location","type":"exact"},{"name":"abnormal nucleus position","type":"exact"},{"name":"displaced nucleus","type":"exact"},{"name":"mislocalised nucleus","type":"exact"},{"name":"misplaced nuclei","type":"exact"},{"name":"misplaced nucleus","type":"exact"},{"name":"nuclear displacement","type":"exact"},{"name":"nuclear position: abnormal","type":"related"}],"termid":"FYPO:0002069"}


id: PBO:0014235
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Cullin-associated NEDD8-dissociated protein Knd1 (predicted)","termid":"PBO:0014235"}


id: GO:0006703
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of estrogens, C18 steroid hormones that can stimulate the development of female sexual characteristics. Also found in plants.","definition_xrefs":["ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"estrogen metabolic process","termid":"GO:0008210"},{"relation_name":"is_a","term_name":"hormone biosynthetic process","termid":"GO:0042446"},{"relation_name":"is_a","term_name":"steroid hormone biosynthetic process","termid":"GO:0120178"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006629"}],"interesting_parent_ids":["GO:0006629","GO:0008150"],"is_obsolete":false,"name":"estrogen biosynthetic process","synonyms":[{"name":"estrogen anabolism","type":"exact"},{"name":"estrogen biosynthesis","type":"exact"},{"name":"estrogen formation","type":"exact"},{"name":"estrogen synthesis","type":"exact"},{"name":"oestrogen biosynthesis","type":"exact"},{"name":"oestrogen biosynthetic process","type":"exact"}],"termid":"GO:0006703"}


id: PBO:0084074
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"GTP-binding protein; regulates nitrogen starvation response, sporulation, and filamentous growth; farnesylation and palmitoylation required for activity and localization to plasma membrane; activated by increased levels of glycolysis intermediate fructose-1,6-bisphosphate; homolog of mammalian Ras proto-oncogenes; RAS2 has a paralog, RAS1, that arose from the whole genome duplication","termid":"PBO:0084074"}


id: PBO:0002386
data:
  {"annotation_feature_type":"gene","cv_name":"EC numbers","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"3.2.1.58","termid":"PBO:0002386"}


id: PBO:0050731
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"heat shock protein family D (Hsp60) member 1 pseudogene 17","termid":"PBO:0050731"}


id: FYPO:0001601
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of a specific substance measured in the vacuole differs from normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"altered level of substance in cell during vegetative growth","termid":"FYPO:0001323"},{"relation_name":"is_a","term_name":"abnormal vacuole","termid":"FYPO:0002794"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0000002","FYPO:0001985"],"is_obsolete":false,"name":"altered level of substance in vacuole","synonyms":[{"name":"abnormal level of substance in vacuole","type":"exact"},{"name":"abnormal level of substance in vacuole during vegetative growth","type":"exact"},{"name":"abnormal vacuolar level of substance","type":"exact"},{"name":"altered level of substance in vacuole during mitotic cell cycle","type":"related"},{"name":"altered vacuolar level of substance","type":"exact"}],"termid":"FYPO:0001601"}


id: PBO:0030453
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_homocitrate_synthase_activity","termid":"PBO:0030453"}


id: PBO:0056837
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase B","termid":"PBO:0056837"}


id: PBO:0089432
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SNARE Bet1","termid":"PBO:0089432"}


id: PBO:0070135
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U7 small nuclear 49 pseudogene","termid":"PBO:0070135"}


id: GO:0047049
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: (R)-2-hydroxystearate + NAD+ = 2-oxostearate + H+ + NADH.","definition_xrefs":["EC:1.1.1.98","RHEA:15949"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor","termid":"GO:0016616"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016491"],"is_obsolete":false,"name":"(R)-2-hydroxy-fatty acid dehydrogenase activity","secondary_identifiers":["MetaCyc:1.1.1.98-RXN","KEGG_REACTION:R03021"],"synonyms":[{"name":"(R)-2-hydroxy-fatty-acid dehydrogenase activity","type":"exact"},{"name":"(R)-2-hydroxystearate:NAD+ oxidoreductase activity","type":"related"},{"name":"2-hydroxy fatty acid oxidase","type":"broad"},{"name":"D-2-hydroxy fatty acid dehydrogenase activity","type":"related"}],"termid":"GO:0047049"}


id: GO:1901778
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving pentalenolactone.","definition_xrefs":["GOC:TermGenie","PMID:17178094","GOC:yaf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"sesquiterpenoid metabolic process","termid":"GO:0006714"},{"relation_name":"is_a","term_name":"monocarboxylic acid metabolic process","termid":"GO:0032787"},{"relation_name":"is_a","term_name":"epoxide metabolic process","termid":"GO:0097176"},{"relation_name":"is_a","term_name":"lactone metabolic process","termid":"GO:1901334"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0006629"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006629","GO:0008150","GO:0044281"],"is_obsolete":false,"name":"pentalenolactone metabolic process","synonyms":[{"name":"pentalenolactone metabolism","type":"exact"}],"termid":"GO:1901778"}


id: PBO:0049260
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"GSC divergent transcript","termid":"PBO:0049260"}


id: GO:0045040
data:
  {"annotated_genes":["SJAG_03502","SJAG_01780","SJAG_03710","SJAG_02361","SJAG_02034","SJAG_01951","SJAG_00569","SJAG_04370","SJAG_03416","SJAG_02797","SJAG_02355"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[70251,75737,93747,94088,102861,102908,102992,105323,105662,105672,107026],"is_not":false,"summary":null,"term":"GO:0045040"}]},"cv_name":"biological_process","definition":"The process comprising the insertion of proteins from outside the organelle into the mitochondrial outer membrane, mediated by large outer membrane translocase complexes.","definition_xrefs":["PMID:18672008","GOC:vw","GOC:mcc"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mitochondrial transport","termid":"GO:0006839"},{"relation_name":"is_a","term_name":"intracellular protein transport","termid":"GO:0006886"},{"relation_name":"is_a","term_name":"outer mitochondrial membrane organization","termid":"GO:0007008"},{"relation_name":"is_a","term_name":"establishment of protein localization to mitochondrial membrane","termid":"GO:0090151"},{"relation_name":"part_of","term_name":"protein targeting to mitochondrion","termid":"GO:0006626"}],"gene_count":11,"genes_by_uniquename":{"SJAG_00569":null,"SJAG_01780":null,"SJAG_01951":null,"SJAG_02034":null,"SJAG_02355":null,"SJAG_02361":null,"SJAG_02797":null,"SJAG_03416":null,"SJAG_03502":null,"SJAG_03710":null,"SJAG_04370":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0006605"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0061024"},{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0007005"}],"interesting_parent_ids":["GO:0051179","GO:0007005","GO:0006605","GO:0006810","GO:0008150","GO:0061024"],"is_obsolete":false,"name":"protein insertion into mitochondrial outer membrane","references_by_uniquename":{"GO_REF:0000107":null,"PMID:21873635":null},"synonyms":[{"name":"mitochondrial outer membrane protein import","type":"exact"},{"name":"protein import into mitochondrial outer membrane","type":"exact"},{"name":"protein transport into mitochondrial outer membrane","type":"exact"}],"termid":"GO:0045040","terms_by_termid":{"GO:0045040":null}}


id: PBO:0056033
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"lymphotoxin beta","termid":"PBO:0056033"}


id: PBO:0041273
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"C1q and TNF related 1","termid":"PBO:0041273"}


id: GO:0035124
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process, occurring in the embryo, by which the anatomical structures of the caudal fin are generated and organized. The caudal fin is an unpaired medial fin mounted at the caudal end of the fish and is the main fin used for propulsion.","definition_xrefs":["GOC:dgh"],"direct_ancestors":[{"relation_name":"is_a","term_name":"embryonic medial fin morphogenesis","termid":"GO:0035122"},{"relation_name":"is_a","term_name":"caudal fin morphogenesis","termid":"GO:0035143"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"embryonic caudal fin morphogenesis","termid":"GO:0035124"}


id: PBO:0049238
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"GRM7 antisense RNA 2","termid":"PBO:0049238"}


id: GO:0046965
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a nuclear retinoid X receptor.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nuclear retinoic acid receptor binding","termid":"GO:0042974"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0005515"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0005515","GO:0003674","GO:0005488"],"is_obsolete":false,"name":"nuclear retinoid X receptor binding","synonyms":[{"name":"RXR binding","type":"exact"},{"name":"retinoid X receptor binding","type":"broad"}],"termid":"GO:0046965"}


id: PATO:0001676
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"An efficiency which is relatively high.","definition_xrefs":["PATOC:GVG"],"direct_ancestors":[{"relation_name":"increased_in_magnitude_relative_to","term_name":"normal","termid":"PATO:0000461"},{"relation_name":"is_a","term_name":"efficient","termid":"PATO:0001678"},{"relation_name":"is_a","term_name":"increased object quality","termid":"PATO:0002305"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"increased efficiency","synonyms":[{"name":"high efficiency","type":"exact"}],"termid":"PATO:0001676"}


id: PBO:0090432
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial NADH kinase Pos5","termid":"PBO:0090432"}


id: PBO:0074761
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nucleolar RNA, H/ACA box 120","termid":"PBO:0074761"}


id: PBO:0089268
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pumilio family RNA-binding protein Puf6","termid":"PBO:0089268"}


id: GO:0102703
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: geranyl diphosphate = (-)-camphene + diphosphoric acid.","definition_xrefs":["EC:4.2.3.117","GOC:pz"],"direct_ancestors":[{"relation_name":"is_a","term_name":"carbon-oxygen lyase activity, acting on phosphates","termid":"GO:0016838"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016829"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016829"],"is_obsolete":false,"name":"camphene synthase activity","secondary_identifiers":["RHEA:25484","MetaCyc:RXN-5142"],"termid":"GO:0102703"}


id: PBO:0084413
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MADS-box transcription factor involved in osmotic stress response; SMP1 has a paralog, RLM1, that arose from the whole genome duplication","termid":"PBO:0084413"}


id: PBO:0086105
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein required for assembly of respiratory complex III; mitochondrial inner membrane protein; required for an early step in assembly of respiratory complex III (cytochrome bc1 complex); mRNA is targeted to mitochondria","termid":"PBO:0086105"}


id: PBO:0016904
data:
  {"annotation_feature_type":"gene","cv_name":"misc","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"U3 RNA is transcribed with a 3' extension that is removed by post-transcriptional RNA processing","termid":"PBO:0016904"}


id: GO:0010299
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that reduces or removes the toxicity of cobalt ion. These include transport of cobalt away from sensitive areas and to compartments or complexes whose purpose is sequestration of cobalt ion.","definition_xrefs":["GOC:tair_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"detoxification of inorganic compound","termid":"GO:0061687"},{"relation_name":"part_of","term_name":"response to cobalt ion","termid":"GO:0032025"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0098754"}],"interesting_parent_ids":["GO:0098754","GO:0008150"],"is_obsolete":false,"name":"detoxification of cobalt ion","termid":"GO:0010299"}


id: PBO:0071299
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L26 pseudogene 22","termid":"PBO:0071299"}


id: PBO:0089923
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DUF2011 family conserved fungal protein","termid":"PBO:0089923"}


id: PBO:0048498
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ganglioside induced differentiation associated protein 1 like 1","termid":"PBO:0048498"}


id: PBO:0090731
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"GATOR2-SEACAT complex WD repeat subunit Sea2","termid":"PBO:0090731"}


id: PBO:0111056
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"HLA complex group 22 (non-protein coding)","termid":"PBO:0111056"}


id: PBO:0061152
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NMNAT1 pseudogene 4","termid":"PBO:0061152"}


id: GO:0009990
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Cell recognition involving the deposition of specific pathways in the extracellular matrix that guide migrating cells.","definition_xrefs":["ISBN:0824072820"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell-matrix recognition","termid":"GO:0009989"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"contact guidance","termid":"GO:0009990"}


id: FYPO:0001470
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A phenotype in which vegetative cell population growth is normal (i.e. indistinguishable from wild type) in a medium containing tacrolimus.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal vegetative cell population growth","termid":"FYPO:0001357"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0002057"},{"rel_name":"is_a","termid":"FYPO:0002060"},{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0000003"},{"rel_name":"is_a","termid":"FYPO:0002058"},{"rel_name":"is_a","termid":"FYPO:0000139"}],"interesting_parent_ids":["FYPO:0002057","FYPO:0000003","FYPO:0002060","FYPO:0000257","FYPO:0002058","FYPO:0000139"],"is_obsolete":false,"name":"normal growth on tacrolimus","synonyms":[{"name":"normal cell population growth in presence of tacrolimus","type":"exact"},{"name":"normal cell population growth on tacrolimus","type":"exact"},{"name":"normal cellular response to FK506","type":"exact"},{"name":"normal cellular response to tacrolimus","type":"related"},{"name":"normal vegetative cell population growth on tacrolimus","type":"exact"}],"termid":"FYPO:0001470"}


id: PBO:0085460
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Predicted malonyl-CoA:ACP transferase; putative component of a type-II mitochondrial fatty acid synthase that produces intermediates for phospholipid remodeling","termid":"PBO:0085460"}


id: PBO:0052457
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"KLF7 intronic transcript 1","termid":"PBO:0052457"}


id: PR:Q10273
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPAC13G7.09c gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q10273"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized protein C13G7.09c (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC13G7.09c","synonyms":[{"name":"Spom972h-SPAC13G7.09c","type":"exact"}],"termid":"PR:Q10273"}


id: GO:1901835
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of deadenylation-independent decapping of nuclear-transcribed mRNA.","definition_xrefs":["GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of mRNA catabolic process","termid":"GO:0061014"},{"relation_name":"is_a","term_name":"regulation of deadenylation-independent decapping of nuclear-transcribed mRNA","termid":"GO:1901834"},{"relation_name":"positively_regulates","term_name":"deadenylation-independent decapping of nuclear-transcribed mRNA","termid":"GO:0031087"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0016071"},{"rel_name":"positively_regulates","termid":"GO:0044248"},{"rel_name":"regulates","termid":"GO:0010467"},{"rel_name":"regulates","termid":"GO:0044248"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"positively_regulates","termid":"GO:0016071"}],"interesting_parent_ids":["GO:0010467","GO:0016071","GO:0008150","GO:0044248"],"is_obsolete":false,"name":"positive regulation of deadenylation-independent decapping of nuclear-transcribed mRNA","synonyms":[{"name":"activation of deadenylation-independent decapping of nuclear mRNA","type":"related"},{"name":"activation of deadenylation-independent decapping of nuclear-transcribed mRNA","type":"narrow"},{"name":"activation of deadenylylation-independent decapping","type":"exact"},{"name":"positive regulation of deadenylation-independent decapping of nuclear mRNA","type":"related"},{"name":"positive regulation of deadenylylation-independent decapping","type":"exact"},{"name":"up regulation of deadenylation-independent decapping of nuclear mRNA","type":"related"},{"name":"up regulation of deadenylation-independent decapping of nuclear-transcribed mRNA","type":"exact"},{"name":"up regulation of deadenylylation-independent decapping","type":"exact"},{"name":"up-regulation of deadenylation-independent decapping of nuclear mRNA","type":"related"},{"name":"up-regulation of deadenylation-independent decapping of nuclear-transcribed mRNA","type":"exact"},{"name":"up-regulation of deadenylylation-independent decapping","type":"exact"},{"name":"upregulation of deadenylation-independent decapping of nuclear mRNA","type":"related"},{"name":"upregulation of deadenylation-independent decapping of nuclear-transcribed mRNA","type":"exact"},{"name":"upregulation of deadenylylation-independent decapping","type":"exact"}],"termid":"GO:1901835"}


id: PBO:0067577
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 734, pseudogene","termid":"PBO:0067577"}


id: GO:1902898
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving fatty acid methyl ester.","definition_xrefs":["GOC:TermGenie","PMID:16570218","GO_REF:0000068","GOC:mengo_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"fatty acid derivative metabolic process","termid":"GO:1901568"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006629"}],"interesting_parent_ids":["GO:0008150","GO:0006629"],"is_obsolete":false,"name":"fatty acid methyl ester metabolic process","synonyms":[{"name":"FAME metabolic process","type":"exact"},{"name":"fatty acid methyl ester metabolism","type":"exact"}],"termid":"GO:1902898"}


id: MOD:00572
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"modification from Unimod Chemical derivative","definition_xrefs":["Unimod:343","PubMed:15828771","PubMed:15174056"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Unimod","termid":"MOD:00003"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"oxidized arginine biotinylated with biotin hydrazide","synonyms":[{"name":"Argbiotinhydrazide","type":"related"},{"name":"oxidized Arginine biotinylated with biotin hydrazide","type":"related"}],"termid":"MOD:00572"}


id: GO:0015558
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Enables the transfer of p-aminobenzoyl-glutamate from one side of a membrane to the other, up its concentration gradient. The transporter binds the solute and undergoes a series of conformational changes. Transport works equally well in either direction and is driven by a chemiosmotic source of energy. Secondary active transporters include symporters and antiporters. p-aminobenzoyl-glutamate is the anion of p-aminobenzoyl-glutamic acid.","definition_xrefs":["GOC:ai","RHEA:35043"],"direct_ancestors":[{"relation_name":"is_a","term_name":"dicarboxylic acid transmembrane transporter activity","termid":"GO:0005310"},{"relation_name":"is_a","term_name":"secondary active transmembrane transporter activity","termid":"GO:0015291"},{"relation_name":"is_a","term_name":"dipeptide transmembrane transporter activity","termid":"GO:0071916"},{"relation_name":"is_a","term_name":"modified amino acid transmembrane transporter activity","termid":"GO:0072349"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0022857"}],"interesting_parent_ids":["GO:0005215","GO:0022857","GO:0003674"],"is_obsolete":false,"name":"secondary active p-aminobenzoyl-glutamate transmembrane transporter activity","secondary_identifiers":["GO:0015569"],"synonyms":[{"name":"p-aminobenzoyl-glutamate transmembrane transporter activity","type":"narrow"},{"name":"p-aminobenzoyl-glutamate transporter activity","type":"related"},{"name":"p-aminobenzoyl-glutamate uptake permease activity","type":"related"},{"name":"p-aminobenzoyl-glutamate uptake transmembrane transporter activity","type":"related"}],"termid":"GO:0015558"}


id: PBO:0087146
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA-binding subunit of the TRAMP nuclear RNA surveillance complex; involved in nuclear RNA processing and degradation; involved in TRAMP complex assembly as a bridge between Mtr4p and Trf4p; stimulates the poly(A) polymerase activity of Pap2p in vitro; has 5 zinc knuckle motifs; AIR2 has a paralog, AIR1, that arose from the whole genome duplication; Air2p and Air1p have nonredundant roles in regulation of substrate specificity of the exosome","termid":"PBO:0087146"}


id: GO:0000350
data:
  {"annotated_genes":["SJAG_02455","SJAG_01214","SJAG_01152","SJAG_01200"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[72891,76459,100225,104837],"is_not":false,"summary":null,"term":"GO:0000350"}]},"cv_name":"biological_process","definition":"Conformational rearrangement of the spliceosomal complex containing the RNA products from the 1st step of splicing to form the catalytic site for the second step of splicing.","definition_xrefs":["ISBN:0879695897","GOC:krc"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein-RNA complex assembly","termid":"GO:0022618"},{"relation_name":"part_of","term_name":"spliceosomal conformational changes to generate catalytic conformation","termid":"GO:0000393"}],"gene_count":4,"genes_by_uniquename":{"SJAG_01152":null,"SJAG_01200":null,"SJAG_01214":null,"SJAG_02455":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0065003"},{"rel_name":"part_of","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0065003"},{"rel_name":"part_of","termid":"GO:0016071"},{"rel_name":"part_of","termid":"GO:0044085"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0065003","GO:0008150","GO:0016071","GO:0044085","GO:0010467"],"is_obsolete":false,"name":"generation of catalytic spliceosome for second transesterification step","references_by_uniquename":{"GO_REF:0000107":null,"PMID:21873635":null},"secondary_identifiers":["GO:0000358","GO:0000359"],"synonyms":[{"name":"catalytic spliceosome assembly for second transesterification step","type":"related"},{"name":"formation of catalytic U12-type spliceosome for second transesterification step","type":"narrow"},{"name":"formation of catalytic U2-type spliceosome for second transesterification step","type":"narrow"},{"name":"formation of catalytic spliceosome for second transesterification step","type":"exact"},{"name":"formation of spliceosomal A2-2 complex","type":"narrow"},{"name":"formation of spliceosomal C1 complex","type":"narrow"},{"name":"lariat formation, 5'-splice site cleavage","type":"related"},{"name":"spliceosomal A2-3 complex biosynthesis","type":"narrow"},{"name":"spliceosomal A2-3 complex formation","type":"narrow"},{"name":"spliceosomal C2 complex biosynthesis","type":"narrow"},{"name":"spliceosomal C2 complex formation","type":"narrow"}],"termid":"GO:0000350","terms_by_termid":{"GO:0000350":null}}


id: PBO:0059656
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MT-CO1 pseudogene 22","termid":"PBO:0059656"}


id: GO:2000301
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of synaptic vesicle exocytosis.","definition_xrefs":["GOC:obol"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of regulated secretory pathway","termid":"GO:1903306"},{"relation_name":"is_a","term_name":"regulation of synaptic vesicle exocytosis","termid":"GO:2000300"},{"relation_name":"negatively_regulates","term_name":"synaptic vesicle exocytosis","termid":"GO:0016079"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"negatively_regulates","termid":"GO:0016192"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0023052"},{"rel_name":"negatively_regulates","termid":"GO:0006810"},{"rel_name":"regulates","termid":"GO:0016192"},{"rel_name":"regulates","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0006810","GO:0023052","GO:0016192","GO:0008150"],"is_obsolete":false,"name":"negative regulation of synaptic vesicle exocytosis","termid":"GO:2000301"}


id: PATO:0002372
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A viviparous organism that has given birth five or more times.","definition_xrefs":["wiki:http://en.wikipedia.org/wiki/Parity_(biology)"],"direct_ancestors":[{"relation_name":"is_a","term_name":"multiparous","termid":"PATO:0002369"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"grand multi[arous","termid":"PATO:0002372"}


id: PBO:0091977
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"wtf meiotic drive antidote Wtf19","termid":"PBO:0091977"}


id: PBO:0066335
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"regulator of chromosome condensation 1","termid":"PBO:0066335"}


id: PBO:0077583
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tropomodulin 2","termid":"PBO:0077583"}


id: PBO:0072158
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein S15a pseudogene 35","termid":"PBO:0072158"}


id: _global:absent_during
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD_extension_relations","definition":"Identifies a biological phase or process during which the modification is not observed, where it is not known whether the modification was removed during the indicated phase or process (if this is known use the removed_during relation), or during a preceding phase or process.","definition_xrefs":["PomBase:al"],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"absent_during","termid":"_global:absent_during"}


id: GO:1990255
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a subsynaptic reticulum. A subsynaptic reticulum is an elaborate tubulolamellar membrane system that underlies the postsynaptic cell membrane.","definition_xrefs":["PMID:21041451"],"direct_ancestors":[{"relation_name":"is_a","term_name":"organelle organization","termid":"GO:0006996"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"subsynaptic reticulum organization","termid":"GO:1990255"}


id: PBO:0057996
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 3920","termid":"PBO:0057996"}


id: GO:0046219
data:
  {"annotated_genes":["SJAG_02408","SJAG_05007","SJAG_02505","SJAG_03167","SJAG_01346","SJAG_01455"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[76223,71310,78107,72846,73237,73694],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0000162"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of indolalkylamines, indole or indole derivatives containing a primary, secondary, or tertiary amine group.","definition_xrefs":["GOC:curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"indolalkylamine metabolic process","termid":"GO:0006586"},{"relation_name":"is_a","term_name":"biogenic amine biosynthetic process","termid":"GO:0042401"},{"relation_name":"is_a","term_name":"indole-containing compound biosynthetic process","termid":"GO:0042435"}],"gene_count":6,"genes_by_uniquename":{"SJAG_01346":null,"SJAG_01455":null,"SJAG_02408":null,"SJAG_02505":null,"SJAG_03167":null,"SJAG_05007":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"indolalkylamine biosynthetic process","references_by_uniquename":{"PMID:21873635":null},"synonyms":[{"name":"indolalkylamine anabolism","type":"exact"},{"name":"indolalkylamine biosynthesis","type":"exact"},{"name":"indolalkylamine formation","type":"exact"},{"name":"indolalkylamine synthesis","type":"exact"}],"termid":"GO:0046219","terms_by_termid":{"GO:0000162":null}}


id: PBO:0081534
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein 444","termid":"PBO:0081534"}


id: MOD:01345
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-threonine residue to 2-amino-3-oxobutanoic acid.","definition_xrefs":["PubMed:9252331","Unimod:401#T","OMSSA:23","PubMed:12716131"],"direct_ancestors":[{"relation_name":"is_a","term_name":"modified L-threonine residue","termid":"MOD:00917"},{"relation_name":"is_a","term_name":"didehydrogenated residue","termid":"MOD:01888"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"2-amino-3-oxobutanoic acid","synonyms":[{"name":"2-amino-3-ketobutyric acid","type":"exact"},{"name":"2-amino-3-oxo-butanoic_acid","type":"related"},{"name":"3-ketobutyrine","type":"exact"},{"name":"Didehydro","type":"related"},{"name":"twoamino3oxobutanoicacid","type":"exact"}],"termid":"MOD:01345"}


id: GO:0110031
data:
  {"annotated_genes":["SJAG_00364","SJAG_04287","SJAG_03854","SJAG_04280","SJAG_02771"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[70777,77384],"is_not":false,"summary":null,"term":"GO:0110031"},{"annotations":[101965,111184,87068],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0033315"}]},"cv_name":"biological_process","definition":"Any signaling pathway that decreases or inhibits the activity of a cell cycle cyclin-dependent protein kinase to modulate the switch from G2 phase to MI phase of the meiotic cell cycle.","definition_xrefs":["GOC:vw","PMID:25492408"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of G2/MI transition of meiotic cell cycle","termid":"GO:0110030"},{"relation_name":"is_a","term_name":"negative regulation of meiotic cell cycle phase transition","termid":"GO:1901994"},{"relation_name":"is_a","term_name":"negative regulation of cell cycle G2/M phase transition","termid":"GO:1902750"},{"relation_name":"negatively_regulates","term_name":"G2/MI transition of meiotic cell cycle","termid":"GO:0008315"}],"gene_count":5,"genes_by_uniquename":{"SJAG_00364":null,"SJAG_02771":null,"SJAG_03854":null,"SJAG_04280":null,"SJAG_04287":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"negatively_regulates","termid":"GO:0007049"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0007049"}],"interesting_parent_ids":["GO:0007049","GO:0008150"],"is_obsolete":false,"name":"negative regulation of G2/MI transition of meiotic cell cycle","references_by_uniquename":{"GO_REF:0000107":null,"PMID:21873635":null},"termid":"GO:0110031","terms_by_termid":{"GO:0033315":null,"GO:0110031":null}}


id: PBO:0034684
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_duration_of_Ssb1_focus_presence_during_cellular_response_to_ionizing_radiation","termid":"PBO:0034684"}


id: GO:0033178
data:
  {"annotated_genes":["SJAG_00915","SJAG_00136","SJAG_01397","SJAG_01817","SJAG_02598","SJAG_01471","SJAG_00438","SJAG_04955","SJAG_00212","SJAG_02564","SJAG_04015","SJAG_00133","SJAG_03114","SJAG_01447"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[72608,88458],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0005754"},{"annotations":[98439,100365,104090],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0005756"},{"annotations":[77931],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0045261"},{"annotations":[113747,98084,94417,92155,95482,105151,83795,71311],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0000221"}]},"cv_name":"cellular_component","definition":"A protein complex that forms part of a proton-transporting two-sector ATPase complex and catalyzes ATP hydrolysis or synthesis. The catalytic domain (F1, V1, or A1) comprises a hexameric catalytic core and a central stalk, and is peripherally associated with the membrane when the two-sector ATPase is assembled.","definition_xrefs":["GOC:mah","PMID:10838056"],"direct_ancestors":[{"relation_name":"is_a","term_name":"membrane protein complex","termid":"GO:0098796"},{"relation_name":"part_of","term_name":"proton-transporting two-sector ATPase complex","termid":"GO:0016469"}],"gene_count":14,"genes_by_uniquename":{"SJAG_00133":null,"SJAG_00136":null,"SJAG_00212":null,"SJAG_00438":null,"SJAG_00915":null,"SJAG_01397":null,"SJAG_01447":null,"SJAG_01471":null,"SJAG_01817":null,"SJAG_02564":null,"SJAG_02598":null,"SJAG_03114":null,"SJAG_04015":null,"SJAG_04955":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0032991","GO:0005575"],"is_obsolete":false,"name":"proton-transporting two-sector ATPase complex, catalytic domain","references_by_uniquename":{"GO_REF:0000107":null,"PMID:21873635":null},"termid":"GO:0033178","terms_by_termid":{"GO:0000221":null,"GO:0005754":null,"GO:0005756":null,"GO:0045261":null}}


id: FYPO:0001756
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which the observed rate of protein phosphatase activity is abnormal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal phosphatase activity","termid":"FYPO:0004302"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000661"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0000654"},{"rel_name":"is_a","termid":"FYPO:0000707"}],"interesting_parent_ids":["FYPO:0000654","FYPO:0000707","FYPO:0001985","FYPO:0000661","FYPO:0000652"],"is_obsolete":false,"name":"abnormal protein phosphatase activity","synonyms":[{"name":"abnormal phosphoprotein phosphatase activity","type":"exact"}],"termid":"FYPO:0001756"}


id: GO:0030409
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 5-formimidoyltetrahydrofolate + L-glutamate = tetrahydrofolate + N-formimidoyl-L-glutamate.","definition_xrefs":["RHEA:15097"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hydroxymethyl-, formyl- and related transferase activity","termid":"GO:0016742"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016741"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016741","GO:0003824","GO:0016740","GO:0003674"],"is_obsolete":false,"name":"glutamate formimidoyltransferase activity","secondary_identifiers":["GO:0030407","EC:2.1.2.5","MetaCyc:GLUTAMATE-FORMIMINOTRANSFERASE-RXN"],"synonyms":[{"name":"5-formimidoyltetrahydrofolate:L-glutamate N-formimidoyltransferase activity","type":"related"},{"name":"formimidoyltransferase activity","type":"broad"},{"name":"formiminoglutamic acid transferase activity","type":"related"},{"name":"formiminoglutamic formiminotransferase activity","type":"related"},{"name":"formiminotransferase activity","type":"broad"},{"name":"glutamate formiminotransferase activity","type":"exact"},{"name":"glutamate formyltransferase activity","type":"related"}],"termid":"GO:0030409"}


id: GO:0002645
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate, or extent of tolerance induction.","definition_xrefs":["GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of tolerance induction","termid":"GO:0002643"},{"relation_name":"is_a","term_name":"positive regulation of immune system process","termid":"GO:0002684"},{"relation_name":"is_a","term_name":"positive regulation of multicellular organismal process","termid":"GO:0051240"},{"relation_name":"positively_regulates","term_name":"tolerance induction","termid":"GO:0002507"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of tolerance induction","synonyms":[{"name":"activation of tolerance induction","type":"narrow"},{"name":"stimulation of tolerance induction","type":"narrow"},{"name":"up regulation of tolerance induction","type":"exact"},{"name":"up-regulation of tolerance induction","type":"exact"},{"name":"upregulation of tolerance induction","type":"exact"}],"termid":"GO:0002645"}


id: PBO:0086664
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Putative protein of unknown function; identified by expression profiling and mass spectrometry","termid":"PBO:0086664"}


id: _global:capable_of_positively_regulating
data:
  {"annotation_feature_type":"gene","cv_name":"external","definition":"Holds between c and p if and only if c is capable of some activity a, and a positively regulates p.","direct_ancestors":[{"relation_name":"is_a","term_name":"capable_of_regulating","termid":"_global:capable_of_regulating"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"capable_of_positively_regulating","secondary_identifiers":["RO:0002598"],"termid":"_global:capable_of_positively_regulating"}


id: FYPO:0006676
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which transcription occurs to a lower extent than normal during a cellular response to hydroxyurea. All genes, or a specific subset of genes, may be affected.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased transcription during vegetative growth","termid":"FYPO:0000781"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0006551"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000294"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0000002","FYPO:0006551","FYPO:0000294","FYPO:0001985","FYPO:0001320"],"is_obsolete":false,"name":"decreased transcription during cellular response to hydroxyurea","synonyms":[{"name":"decreased transcription during cellular response to HU","type":"exact"},{"name":"decreased transcription during cellular response to hydroxyurea during mitotic cell cycle","type":"related"},{"name":"decreased transcription during cellular response to hydroxyurea during vegetative growth","type":"exact"},{"name":"decreased transcription in response to HU","type":"exact"},{"name":"decreased transcription in response to hydroxyurea","type":"exact"},{"name":"reduced transcription during cellular response to hydroxyurea","type":"exact"}],"termid":"FYPO:0006676"}


id: PBO:0029265
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_RNA_level_during_cellular_response_to_methyl_methanesulfonate","termid":"PBO:0029265"}


id: PBO:0056472
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"methionine adenosyltransferase 2A","termid":"PBO:0056472"}


id: GO:0070231
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any apoptotic process in a T cell, a type of lymphocyte whose defining characteristic is the expression of a T cell receptor complex.","definition_xrefs":["GOC:add","GOC:mtg_apoptosis","CL:0000084","ISBN:0781765196"],"direct_ancestors":[{"relation_name":"is_a","term_name":"lymphocyte apoptotic process","termid":"GO:0070227"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"T cell apoptotic process","synonyms":[{"name":"T cell apoptosis","type":"narrow"},{"name":"T lymphocyte apoptosis","type":"exact"},{"name":"T-cell apoptosis","type":"exact"},{"name":"T-lymphocyte apoptosis","type":"exact"},{"name":"programmed cell death of T cells by apoptosis","type":"exact"}],"termid":"GO:0070231"}


id: GO:0099005
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The component of the postsynaptic recycling endosome membrane consisting of gene products and protein complexes that are loosely bound to one of its surfaces, but not integrated into the hydrophobic region.","definition_xrefs":["GOC:autophagy","GOC:mf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"extrinsic component of postsynaptic endosome membrane","termid":"GO:0098999"},{"relation_name":"part_of","term_name":"postsynaptic recycling endosome membrane","termid":"GO:0098944"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005768"},{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0031410"}],"interesting_parent_ids":["GO:0005768","GO:0031410","GO:0005737","GO:0005575"],"is_obsolete":false,"name":"extrinsic component of postsynaptic recycling endosome membrane","termid":"GO:0099005"}


id: PBO:0030966
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_histone_H3-K9_trimethylation","termid":"PBO:0030966"}


id: PBO:0066317
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RBPMS2 pseudogene 1","termid":"PBO:0066317"}


id: PBO:0072054
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein S10 pseudogene 24","termid":"PBO:0072054"}


id: GO:0005030
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Combining with a neurotrophin, any of a family of growth factors that prevent apoptosis in neurons and promote nerve growth, and transmitting the signal to initiate a change in cell activity.","definition_xrefs":["GOC:jl","GOC:signaling"],"direct_ancestors":[{"relation_name":"is_a","term_name":"signaling receptor activity","termid":"GO:0038023"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0038023"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0038023","GO:0003674"],"is_obsolete":false,"name":"neurotrophin receptor activity","termid":"GO:0005030"}


id: GO:0000215
data:
  {"annotated_genes":["SJAG_03913"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[73375],"is_not":false,"summary":null,"term":"GO:0000215"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: 2'-phospho-[ligated tRNA] + NAD+ = mature tRNA + ADP ribose 1'',2''-phosphate + nicotinamide + H2O. This reaction is the transfer of the splice junction 2-phosphate from ligated tRNA to NAD+ to produce ADP-ribose 1'-2' cyclic phosphate.","definition_xrefs":["EC:2.7.1.160","PMID:9148937"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phosphotransferase activity, alcohol group as acceptor","termid":"GO:0016773"},{"relation_name":"is_a","term_name":"catalytic activity, acting on a tRNA","termid":"GO:0140101"}],"gene_count":1,"genes_by_uniquename":{"SJAG_03913":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0140101"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0140098"}],"interesting_parent_ids":["GO:0140101","GO:0003674","GO:0016740","GO:0003824","GO:0140098"],"is_obsolete":false,"name":"tRNA 2'-phosphotransferase activity","references_by_uniquename":{"PMID:21873635":null},"secondary_identifiers":["MetaCyc:2.7.1.160-RXN","GO:0008665","RHEA:23324"],"synonyms":[{"name":"2'-phospho-[ligated tRNA]:NAD+ phosphotransferase activity","type":"related"},{"name":"2'-phospho-tRNA:NAD+ phosphotransferase activity","type":"related"},{"name":"2'-phosphotransferase activity","type":"broad"},{"name":"Tpt1","type":"related"},{"name":"Tpt1p","type":"related"},{"name":"yeast 2'-phosphotransferase activity","type":"narrow"}],"termid":"GO:0000215","terms_by_termid":{"GO:0000215":null}}


id: GO:0110058
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of blood vessel endothelial cell differentiation.","definition_xrefs":["GOC:BHF","PMID:23072816","GOC:BHF_miRNA","GOC:rph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of endothelial cell differentiation","termid":"GO:0045603"},{"relation_name":"is_a","term_name":"regulation of blood vessel endothelial cell differentiation","termid":"GO:0110057"},{"relation_name":"positively_regulates","term_name":"blood vessel endothelial cell differentiation","termid":"GO:0060837"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of blood vessel endothelial cell differentiation","termid":"GO:0110058"}


id: PBO:0089295
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"alpha mannosidase Mnl1","termid":"PBO:0089295"}


id: GO:0042868
data:
  {"annotated_genes":["SJAG_04574","SJAG_03047","SJAG_00266","SJAG_03745","SJAG_03680","SJAG_01176","SJAG_01717","SJAG_02621"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[101620],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0071041"},{"annotations":[103297],"is_not":false,"rel_names":["regulates","negatively_regulates"],"summary":null,"term":"GO:0060195"},{"annotations":[70867,84125,105747,97835,109175,113138],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0071040"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways involving antisense RNA, an RNA molecule complementary in sequence to another RNA or DNA molecule, which, by binding the latter, acts to inhibit its function and/or completion of synthesis.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ncRNA metabolic process","termid":"GO:0034660"}],"gene_count":8,"genes_by_uniquename":{"SJAG_00266":null,"SJAG_01176":null,"SJAG_01717":null,"SJAG_02621":null,"SJAG_03047":null,"SJAG_03680":null,"SJAG_03745":null,"SJAG_04574":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"antisense RNA metabolic process","references_by_uniquename":{"GO_REF:0000107":null,"PMID:21873635":null},"synonyms":[{"name":"antisense RNA metabolism","type":"exact"}],"termid":"GO:0042868","terms_by_termid":{"GO:0060195":null,"GO:0071040":null,"GO:0071041":null}}


id: PBO:0030178
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abolished_3'-5'-exoribonuclease_activity","termid":"PBO:0030178"}


id: PBO:0071196
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L23a pseudogene 37","termid":"PBO:0071196"}


id: GO:0031201
data:
  {"annotated_genes":["SJAG_03536","SJAG_04513","SJAG_00826","SJAG_02586","SJAG_03848","SJAG_02204","SJAG_00171","SJAG_04701","SJAG_04023","SJAG_01324","SJAG_03552","SJAG_04909","SJAG_04978","SJAG_03347","SJAG_02241","SJAG_00557"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[72021,72047,73524,75401,75567,75712,76579,77003,86251,89237,94987,96543,103989,104940,107884,112619],"is_not":false,"summary":null,"term":"GO:0031201"}]},"cv_name":"cellular_component","definition":"A protein complex involved in membrane fusion; a stable ternary complex consisting of a four-helix bundle, usually formed from one R-SNARE and three Q-SNAREs with an ionic layer sandwiched between hydrophobic layers. One well-characterized example is the neuronal SNARE complex formed of synaptobrevin 2, syntaxin 1a, and SNAP-25.","definition_xrefs":["PMID:10872468","PMID:19450911","GOC:pr","GOC:bhm"],"direct_ancestors":[{"relation_name":"is_a","term_name":"membrane protein complex","termid":"GO:0098796"},{"relation_name":"part_of","term_name":"cytoplasm","termid":"GO:0005737"}],"gene_count":16,"genes_by_uniquename":{"SJAG_00171":null,"SJAG_00557":null,"SJAG_00826":null,"SJAG_01324":null,"SJAG_02204":null,"SJAG_02241":null,"SJAG_02586":null,"SJAG_03347":null,"SJAG_03536":null,"SJAG_03552":null,"SJAG_03848":null,"SJAG_04023":null,"SJAG_04513":null,"SJAG_04701":null,"SJAG_04909":null,"SJAG_04978":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005737"}],"interesting_parent_ids":["GO:0005575","GO:0032991","GO:0005737"],"is_obsolete":false,"name":"SNARE complex","references_by_uniquename":{"GO_REF:0000107":null,"PMID:21873635":null},"termid":"GO:0031201","terms_by_termid":{"GO:0031201":null}}


id: GO:0018561
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 2'-aminobiphenyl-2,3-diol + O2 = H+ + 2-hydroxy-6-oxo-(2'-aminophenyl)-hexa-2,4-dienoate.","definition_xrefs":["UM-BBD_reactionID:r0457"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen","termid":"GO:0016702"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016491"],"is_obsolete":false,"name":"2'-aminobiphenyl-2,3-diol 1,2-dioxygenase activity","secondary_identifiers":["EC:1.13.11.-"],"termid":"GO:0018561"}


id: PBO:0083200
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Dubious open reading frame; unlikely to encode a functional protein, based on available experimental and comparative sequence data; completely overlaps the verified gene PHO23/YNL097C","termid":"PBO:0083200"}


id: PBO:0058481
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 5588","termid":"PBO:0058481"}


id: GO:1990372
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. A response that results in a state of tolerance to organic acid.","definition_xrefs":["PMID:23356676","GOC:mengo_curators"],"gene_count":0,"genotype_count":0,"name":"obsolete process resulting in tolerance to organic acid (obsolete GO:1990372)","termid":"GO:1990372"}


id: PBO:0055158
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2577","termid":"PBO:0055158"}


id: GO:0061635
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that affects the structure and integrity of a protein complex by altering the likelihood of its assembly or disassembly.","definition_xrefs":["GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of biological quality","termid":"GO:0065008"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of protein complex stability","termid":"GO:0061635"}


id: PBO:0053538
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 540","termid":"PBO:0053538"}


id: GO:0102325
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: biphenyl-2,2',3-triol + O2 + NADH + H+ = 2,2',3,3'-tetrahydroxybiphenyl + NAD + H2O.","definition_xrefs":["GOC:pz","RHEA:63516"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen","termid":"GO:0016709"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0016491","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"2,2',3-trihydroxybiphenyl monooxygenase activity","secondary_identifiers":["MetaCyc:RXN-13169"],"termid":"GO:0102325"}


id: CHEBI:16467
data:
  {"annotation_feature_type":"gene","cv_name":"chebi_ontology","definition":"An L-alpha-amino acid that is the L-isomer of arginine.","direct_ancestors":[{"relation_name":"is_a","term_name":"chemical entity","termid":"CHEBI:24431"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"L-arginine","termid":"CHEBI:16467"}


id: PBO:0068401
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNF217 antisense RNA 1 (head to head)","termid":"PBO:0068401"}


id: PBO:0043546
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"COL1A2 antisense RNA 1","termid":"PBO:0043546"}


id: PATO:0002112
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A structural quality inhering in a bearer by virtue of the bearer's having a hole or holes, especially a row or array of small holes.","definition_xrefs":["answers.com:answers.com"],"direct_ancestors":[{"relation_name":"is_a","term_name":"structure, cavities","termid":"PATO:0002014"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"perforate","secondary_identifiers":["PATO:0000649"],"synonyms":[{"name":"permeable","type":"related"},{"name":"pierced","type":"related"}],"termid":"PATO:0002112"}


id: PR:Q9HGP7
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPAC212.08c gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q9HGP7"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized GPI-anchored protein C212.08c (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC212.08c","synonyms":[{"name":"Spom972h-SPAC212.08c","type":"exact"}],"termid":"PR:Q9HGP7"}


id: PATO:0001942
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A color consisting of brown and green hues.","definition_xrefs":["PATOC:GVG"],"direct_ancestors":[{"relation_name":"is_a","term_name":"green","termid":"PATO:0000320"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"brown green","synonyms":[{"name":"olive green","type":"exact"}],"termid":"PATO:0001942"}


id: SO:0000619
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A variably distant linear promoter region recognized by TFIIIC, with consensus sequence TGGCnnAGTGG.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"core_eukaryotic_promoter_element","termid":"SO:0001660"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"A_box","secondary_identifiers":["http://en.wikipedia.org/wiki/A-box"],"synonyms":[{"name":"A-box","type":"exact"}],"termid":"SO:0000619"}


id: GO:0030768
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: (3R)-3-hydroxy-16-methoxy-2,3-dihydrotabersonine + S-adenosyl-L-methionine = S-adenosyl-L-homocysteine + deacetoxyvindoline + H+.","definition_xrefs":["RHEA:11336","EC:2.1.1.99"],"direct_ancestors":[{"relation_name":"is_a","term_name":"S-adenosylmethionine-dependent methyltransferase activity","termid":"GO:0008757"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016741"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016741","GO:0016740"],"is_obsolete":false,"name":"16-methoxy-2,3-dihydro-3-hydroxytabersonine N-methyltransferase activity","secondary_identifiers":["KEGG_REACTION:R04013","MetaCyc:2.1.1.99-RXN"],"synonyms":[{"name":"16-methoxy-2,3-dihydro-3-hydroxytabersonine methyltransferase activity","type":"related"},{"name":"3-hydroxy-16-methoxy-2,3-dihydrotabersonine N-methyltransferase activity","type":"related"},{"name":"NMT activity","type":"related"},{"name":"S-adenosyl-L-methionine:16-methoxy-2,3-dihydro-3-hydroxytabersonine N-methyltransferase activity","type":"related"},{"name":"S-adenosyl-L-methionine:3-hydroxy-16-methoxy-2,3-dihydrotabersonine N-methyltransferase activity","type":"related"}],"termid":"GO:0030768"}


id: PBO:0056712
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MEMO1 pseudogene 4","termid":"PBO:0056712"}


id: PBO:0036375
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial PPR repeat protein Ppr10","termid":"PBO:0036375"}


id: FYPO:0004450
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the phosphorylation of one or more specific proteins is normal (i.e. indistinguishable from wild type) during a cellular response to calcium ions.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal protein phosphorylation during vegetative growth","termid":"FYPO:0000776"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0001312"}],"interesting_parent_ids":["FYPO:0000257","FYPO:0000002","FYPO:0001320","FYPO:0001312"],"is_obsolete":false,"name":"normal protein phosphorylation during cellular response to calcium ion","synonyms":[{"name":"normal protein phosphorylation during cellular response to calcium","type":"exact"},{"name":"normal protein phosphorylation during cellular response to calcium ion during mitotic cell cycle","type":"related"},{"name":"normal protein phosphorylation during cellular response to calcium ion during vegetative growth","type":"exact"}],"termid":"FYPO:0004450"}


id: PR:O59738
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPBC530.02 gene.","definition_xrefs":["UniProtKB:O59738","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized transporter C530.02 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC530.02","synonyms":[{"name":"Spom972h-SPBC530.02","type":"exact"}],"termid":"PR:O59738"}


id: GO:0008506
data:
  {"annotated_genes":["SJAG_03960"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[75038],"is_not":false,"summary":null,"term":"GO:0008506"}]},"cv_name":"molecular_function","definition":"Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: sucrose(out) + H+(out) = sucrose(in) + H+(in).","definition_xrefs":["TC:2.A.1.5.3"],"direct_ancestors":[{"relation_name":"is_a","term_name":"carbohydrate:proton symporter activity","termid":"GO:0005351"},{"relation_name":"is_a","term_name":"sucrose:monoatomic cation symporter activity","termid":"GO:0009669"}],"gene_count":1,"genes_by_uniquename":{"SJAG_03960":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0022857","GO:0005215","GO:0003674"],"is_obsolete":false,"name":"sucrose:proton symporter activity","references_by_uniquename":{"PMID:21873635":null},"synonyms":[{"name":"hydrogen/sucrose transporter activity","type":"broad"},{"name":"sucrose:hydrogen symporter activity","type":"exact"}],"termid":"GO:0008506","terms_by_termid":{"GO:0008506":null}}


id: GO:0045690
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of antipodal cell differentiation.","definition_xrefs":["GOC:mtg_plant","GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of cell differentiation","termid":"GO:0045597"},{"relation_name":"is_a","term_name":"regulation of antipodal cell differentiation","termid":"GO:0045688"},{"relation_name":"is_a","term_name":"positive regulation of multicellular organismal process","termid":"GO:0051240"},{"relation_name":"positively_regulates","term_name":"antipodal cell differentiation","termid":"GO:0009557"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of antipodal cell differentiation","synonyms":[{"name":"activation of antipodal cell differentiation","type":"narrow"},{"name":"stimulation of antipodal cell differentiation","type":"narrow"},{"name":"up regulation of antipodal cell differentiation","type":"exact"},{"name":"up-regulation of antipodal cell differentiation","type":"exact"},{"name":"upregulation of antipodal cell differentiation","type":"exact"}],"termid":"GO:0045690"}


id: GO:0002021
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The physiological process in which dietary excess is sensed by the central nervous system, resulting in a reduction in food intake and increased energy expenditure.","definition_xrefs":["GOC:pg","PMID:12161655","GOC:pr"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to nutrient levels","termid":"GO:0031667"},{"relation_name":"is_a","term_name":"energy homeostasis","termid":"GO:0097009"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"response to dietary excess","termid":"GO:0002021"}


id: GO:0016915
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. A nonsteroidal regulator, composed of two covalently linked beta subunits, that is synthesized in the pituitary gland and gonads and stimulates the secretion of follicle-stimulating hormone.","definition_xrefs":["ISBN:0198506732","ISBN:0721662544"],"gene_count":0,"genotype_count":0,"name":"obsolete activin (obsolete GO:0016915)","synonyms":[{"name":"activin","type":"exact"}],"termid":"GO:0016915"}


id: GO:0043027
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binds to and stops, prevents or reduces the activity of a cysteine-type endopeptidase involved in the apoptotic process.","definition_xrefs":["Wikipedia:Caspase","GOC:jl","PMID:14744432","GOC:mtg_apoptosis"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cysteine-type endopeptidase regulator activity involved in apoptotic process","termid":"GO:0043028"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0098772"},{"rel_name":"is_a","termid":"GO:0030234"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0030234","GO:0098772"],"is_obsolete":false,"name":"cysteine-type endopeptidase inhibitor activity involved in apoptotic process","synonyms":[{"name":"caspase inhibitor activity","type":"broad"}],"termid":"GO:0043027"}


id: PBO:0043434
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cornichon family AMPA receptor auxiliary protein 4","termid":"PBO:0043434"}


id: PBO:0075110
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nucleolar RNA, C/D box 159","termid":"PBO:0075110"}


id: PBO:0048479
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glucosaminyl (N-acetyl) transferase 2 (I blood group)","termid":"PBO:0048479"}


id: PBO:0087377
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"STE20-family GCKIII protein kinase; required for prospore membrane closure, efficient spore packaging, and localization of enzymes involved in spore wall synthesis; component of a non-canonical Hippo pathway with Cdc15p involved in spindle disassembly and sustained release of Cdc14p during anaphase II; forms a complex with Cdc15p;  phosphorylation requires Cdc15p; required for Ssp1p phosphorylation and turnover; interacts with 14-3-3 proteins; expressed in late meiosis; nuclear and cytoplasmic","termid":"PBO:0087377"}


id: PBO:0082105
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"AAA-peroxin; heterodimerizes with AAA-peroxin Pex6p and participates in the recycling of peroxisomal signal receptor Pex5p from the peroxisomal membrane to the cystosol; induced by oleic acid and upregulated during anaerobiosis; mutations in human PEX1 can lead to severe peroxisomal disorders and early death","termid":"PBO:0082105"}


id: PBO:0076818
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"teneurin transmembrane protein 4","termid":"PBO:0076818"}


id: PBO:0089035
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Niemann-Pick disease type C2 protein hE1 homolog Npc2","termid":"PBO:0089035"}


id: PBO:0065293
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PRRX2 antisense RNA 1","termid":"PBO:0065293"}


id: GO:0060895
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The series of molecular signals generated as a consequence of a retinoic acid receptor binding to one of its physiological ligands that contributes to the dorsal ventral patterning of the spinal cord.","definition_xrefs":["GOC:sdb_2009","GOC:dph","GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"retinoic acid receptor signaling pathway","termid":"GO:0048384"},{"relation_name":"part_of","term_name":"spinal cord dorsal/ventral patterning","termid":"GO:0021513"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"retinoic acid receptor signaling pathway involved in spinal cord dorsal/ventral patterning","synonyms":[{"name":"retinoic acid receptor signalling pathway involved in spinal cord dorsal/ventral patterning","type":"exact"}],"termid":"GO:0060895"}


id: PBO:0085126
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Nucleolar protein; specifically associated with the U3 snoRNA, part of the large ribonucleoprotein complex known as the small subunit (SSU) processome, required for 18S rRNA biogenesis, part of the active pre-rRNA processing complex","termid":"PBO:0085126"}


id: GO:0004864
data:
  {"annotated_genes":["SJAG_02380","SJAG_04627","SJAG_03272","SJAG_04999","SJAG_03309"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[70380,85100],"is_not":false,"summary":null,"term":"GO:0004864"},{"annotations":[74268,83622,75254],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004865"}]},"cv_name":"molecular_function","definition":"Binds to and stops, prevents or reduces the activity of a protein phosphatase.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phosphatase inhibitor activity","termid":"GO:0019212"},{"relation_name":"is_a","term_name":"protein phosphatase regulator activity","termid":"GO:0019888"}],"gene_count":5,"genes_by_uniquename":{"SJAG_02380":null,"SJAG_03272":null,"SJAG_03309":null,"SJAG_04627":null,"SJAG_04999":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0098772"},{"rel_name":"is_a","termid":"GO:0004857"},{"rel_name":"is_a","termid":"GO:0140678"},{"rel_name":"is_a","termid":"GO:0030234"}],"interesting_parent_ids":["GO:0030234","GO:0004857","GO:0140678","GO:0003674","GO:0098772"],"is_obsolete":false,"name":"protein phosphatase inhibitor activity","references_by_uniquename":{"GO_REF:0000107":null,"PMID:21873635":null},"secondary_identifiers":["GO:1990681"],"synonyms":[{"name":"phosphoprotein phosphatase inhibitor activity","type":"exact"},{"name":"protein phosphatase 2 inhibitor activity","type":"narrow"},{"name":"protein phosphatase type 2A inhibitor activity","type":"narrow"}],"termid":"GO:0004864","terms_by_termid":{"GO:0004864":null,"GO:0004865":null}}


id: PR:P50524
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- rpn12 gene.","definition_xrefs":["UniProtKB:P50524","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"26S proteasome regulatory subunit rpn12 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC16G5.01","synonyms":[{"name":"Spom972h-rpn12","type":"exact"}],"termid":"PR:P50524"}


id: SO:0000149
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A contiguous sequence derived from sequence assembly. Has no gaps, but may contain N's from unavailable bases.","definition_xrefs":["SO:ls"],"direct_ancestors":[{"relation_name":"is_a","term_name":"assembly_component","termid":"SO:0000143"},{"relation_name":"is_a","term_name":"sequence_assembly","termid":"SO:0000353"},{"relation_name":"part_of","term_name":"supercontig","termid":"SO:0000148"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"contig","secondary_identifiers":["http://en.wikipedia.org/wiki/Contig"],"termid":"SO:0000149"}


id: PBO:0088438
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Schizosaccharomyces specific protein Tam13/Mug147, tandem fusion","termid":"PBO:0088438"}


id: PR:Q9UTQ6
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- rps1502 gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q9UTQ6"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"40S ribosomal protein S15-B (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC1071.07c","synonyms":[{"name":"Spom972h-rps1502","type":"exact"}],"termid":"PR:Q9UTQ6"}


id: GO:0030379
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Combining with neurotensin, a neuropeptide active in the central and peripheral nervous system in mammals, and transmitting the signal from one side of the membrane to the other by a mechanism independent of coupling to G proteins.","definition_xrefs":["GOC:signaling","PMID:9756851","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"transmembrane signaling receptor activity","termid":"GO:0004888"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0038023"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0038023","GO:0003674"],"is_obsolete":false,"name":"neurotensin receptor activity, non-G protein-coupled","synonyms":[{"name":"neurotensin receptor activity, non G protein coupled","type":"exact"},{"name":"neurotensin receptor activity, non-G-protein coupled","type":"exact"},{"name":"non G protein coupled neurotensin receptor activity","type":"exact"},{"name":"non-G-protein coupled neurotensin receptor activity","type":"exact"},{"name":"non-G-protein-coupled neurotensin receptor activity","type":"exact"}],"termid":"GO:0030379"}


id: FYPO:0002749
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of L-asparagine measured in the cell is lower than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased cellular amino acid level","termid":"FYPO:0003985"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0000002","FYPO:0001985"],"is_obsolete":false,"name":"decreased cellular asparagine level","synonyms":[{"name":"decreased cellular L-asparagine level","type":"exact"},{"name":"decreased cellular asparagine level during mitotic cell cycle","type":"related"},{"name":"decreased cellular asparagine level during vegetative growth","type":"exact"},{"name":"decreased level of asparagine in cell","type":"exact"},{"name":"reduced cellular asparagine level","type":"exact"},{"name":"reduced level of asparagine in cell","type":"exact"}],"termid":"FYPO:0002749"}


id: PBO:0048168
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"G2/M-phase specific E3 ubiquitin protein ligase","termid":"PBO:0048168"}


id: PBO:0056535
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial coiled-coil domain 1","termid":"PBO:0056535"}


id: PBO:0076800
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tektin 1","termid":"PBO:0076800"}


id: FYPO:0000508
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the occurrence of nuclear export is decreased. Nuclear export is the directed movement of any substance out of the nucleus; export of all substances or a specific substance may be affected.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased intracellular transport","termid":"FYPO:0000464"},{"relation_name":"is_a","term_name":"abnormal nuclear export","termid":"FYPO:0000506"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000138","FYPO:0001320","FYPO:0000002","FYPO:0005447"],"is_obsolete":false,"name":"decreased nuclear export","synonyms":[{"name":"decreased nuclear export during mitotic cell cycle","type":"related"},{"name":"decreased nuclear export during vegetative growth","type":"exact"},{"name":"nuclear export: decreased","type":"related"},{"name":"reduced nuclear export","type":"exact"}],"termid":"FYPO:0000508"}


id: PBO:0067845
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 5S ribosomal pseudogene 147","termid":"PBO:0067845"}


id: PATO:0000590
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0000590 relative thickness value (obsolete PATO:0000590)","termid":"PATO:0000590"}


id: PBO:0068750
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U5E small nuclear 5, pseudogene","termid":"PBO:0068750"}


id: PBO:0057101
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 194-2","termid":"PBO:0057101"}


id: PBO:0067960
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 5S ribosomal pseudogene 262","termid":"PBO:0067960"}


id: PBO:0072566
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RRBP1 pseudogene 1","termid":"PBO:0072566"}


id: PBO:0043613
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"COMM domain containing 4 pseudogene 1","termid":"PBO:0043613"}


id: FYPO:0003477
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the phosphorylation of one or more specific proteins, or of specific protein sites, does not occur during a cellular response to an arsenic-containing substance such as arsenate.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abolished protein phosphorylation during vegetative growth","termid":"FYPO:0002033"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0002274"},{"rel_name":"is_a","termid":"FYPO:0002494"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0002494","FYPO:0001985","FYPO:0005447","FYPO:0000002","FYPO:0001320","FYPO:0002274"],"is_obsolete":false,"name":"abolished protein phosphorylation during cellular response to arsenic-containing substance","synonyms":[{"name":"abolished protein phosphorylation during cellular response to arsenate","type":"narrow"},{"name":"abolished protein phosphorylation during cellular response to arsenic-containing substance during mitotic cell cycle","type":"related"},{"name":"abolished protein phosphorylation during cellular response to arsenic-containing substance during vegetative growth","type":"exact"},{"name":"protein phosphorylation abolished during cellular response to arsenic-containing substance","type":"exact"}],"termid":"FYPO:0003477"}


id: PBO:0040377
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ATP synthase peripheral stalk subunit F6","termid":"PBO:0040377"}


id: MOD:00294
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts two L-cysteine residues, an L-histidine residues, an L-serine residue and a four-iron four-sulfur cluster to bis-L-cysteinyl L-N3'-histidino L-serinyl tetrairon tetrasulfide.","definition_xrefs":["RESID:AA0289"],"direct_ancestors":[{"relation_name":"is_a","term_name":"iron-sulfur cluster containing modification","termid":"MOD:00739"},{"relation_name":"is_a","term_name":"metal or metal cluster coordinated L-cysteine residue","termid":"MOD:02067"},{"relation_name":"is_a","term_name":"metal or metal cluster coordinated L-histidine residue","termid":"MOD:02070"},{"relation_name":"is_a","term_name":"metal or metal cluster coordinated L-serine residue","termid":"MOD:02072"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"bis-L-cysteinyl L-N3'-histidino L-serinyl tetrairon tetrasulfide","synonyms":[{"name":"METAL Iron-sulfur (4Fe-4S)","type":"exact"},{"name":"METAL Iron-sulfur (4Fe-4S); via pros nitrogen","type":"exact"},{"name":"bis-L-cysteinyl L-N3'-histidino L-serinyl tetrairon tetrasulfide","type":"exact"},{"name":"tetra-mu3-sulfidobis(S-cysteinyliron)(N3'-histidinoiron)(O3-serinyliron)","type":"exact"}],"termid":"MOD:00294"}


id: PBO:0089989
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"COPII cargo receptor subunit Sec23b","termid":"PBO:0089989"}


id: MOD:00589
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-phenylalanine residue to (13)C,(15)N labeled L-phenylalanine.","definition_xrefs":["PubMed:12771378","Unimod:269"],"direct_ancestors":[{"relation_name":"is_a","term_name":"(13)C labeled residue","termid":"MOD:00842"},{"relation_name":"is_a","term_name":"(15)N labeled residue","termid":"MOD:00843"},{"relation_name":"is_a","term_name":"modified L-phenylalanine residue","termid":"MOD:00914"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"1x(13)C,1x(15)N labeled L-phenylalanine","synonyms":[{"name":"13C(9) 15N(1) Silac label","type":"related"},{"name":"Label:13C(9)15N(1)","type":"related"}],"termid":"MOD:00589"}


id: FYPO:0007594
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which mitophagy, i.e. autophagic degradation of the mitochondria, does not occur when the cell is subject to nitrogen starvation.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abolished mitophagy","termid":"FYPO:0000499"},{"relation_name":"is_a","term_name":"abnormal mitophagy during nitrogen starvation","termid":"FYPO:0007593"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0000002","FYPO:0001985"],"is_obsolete":false,"name":"abolished mitophagy during nitrogen starvation","synonyms":[{"name":"abolished autophagy of mitochondrion during nitrogen depletion","type":"exact"},{"name":"abolished autophagy of mitochondrion during nitrogen deprivation","type":"exact"},{"name":"abolished autophagy of mitochondrion during nitrogen starvation","type":"exact"},{"name":"autophagy of mitochondrion abolished during nitrogen starvation","type":"exact"}],"termid":"FYPO:0007594"}


id: PBO:0005343
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"urease accessory protein UREG (predicted)","termid":"PBO:0005343"}


id: PBO:0081973
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ZRSR2 pseudogene 1","termid":"PBO:0081973"}


id: PBO:0016891
data:
  {"annotation_feature_type":"gene","cv_name":"misc","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"longer transcript expressed during cold shock due to altered 3'-end processing","termid":"PBO:0016891"}


id: PBO:0039652
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"AP1M2 pseudogene 1","termid":"PBO:0039652"}


id: PBO:0059875
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"myotubularin related protein 12","termid":"PBO:0059875"}


id: PBO:0003253
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tip elongation aberrant protein Tea4","termid":"PBO:0003253"}


id: GO:0035986
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The assembly of chromatin into senescence-associated heterochromatin foci (SAHF), transcriptionally-silent heterochromatin structures present in senescent cells, containing the condensed chromatin of one chromosome, and enriched for histone modifications. Formation of these chromatin structures is thought to repress expression of proliferation-promoting genes.","definition_xrefs":["PMID:21248468","GOC:yaf","PMID:15621527"],"gene_count":0,"genotype_count":0,"name":"obsolete senescence-associated heterochromatin focus assembly (obsolete GO:0035986)","synonyms":[{"name":"SAHF formation","type":"exact"},{"name":"senescence-associated heterochromatin foci formation","type":"exact"},{"name":"senescence-associated heterochromatin focus formation","type":"exact"}],"termid":"GO:0035986"}


id: GO:0032138
data:
  {"annotated_genes":["SJAG_02226","SJAG_00634"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[101434],"is_not":false,"summary":null,"term":"GO:0032138"},{"annotations":[93696],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0032141"}]},"cv_name":"molecular_function","definition":"Binding to a double-stranded DNA region containing a single base insertion or deletion.","definition_xrefs":["GOC:vk"],"direct_ancestors":[{"relation_name":"is_a","term_name":"DNA insertion or deletion binding","termid":"GO:0032135"}],"gene_count":2,"genes_by_uniquename":{"SJAG_00634":null,"SJAG_02226":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003677"},{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0005488","GO:0003677"],"is_obsolete":false,"name":"single base insertion or deletion binding","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"single base insertion binding","type":"narrow"}],"termid":"GO:0032138","terms_by_termid":{"GO:0032138":null,"GO:0032141":null}}


id: GO:0031731
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a CCR6 chemokine receptor.","definition_xrefs":["GOC:nln","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"CCR chemokine receptor binding","termid":"GO:0048020"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005515"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005488"}],"interesting_parent_ids":["GO:0003674","GO:0005515","GO:0005488"],"is_obsolete":false,"name":"CCR6 chemokine receptor binding","synonyms":[{"name":"CCR6 chemokine receptor ligand","type":"narrow"},{"name":"LARC receptor binding","type":"exact"}],"termid":"GO:0031731"}


id: PBO:0053526
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 523","termid":"PBO:0053526"}


id: FYPO:0006132
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of mevalonate measured in a cell is higher than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased level of substance in cell during vegetative growth","termid":"FYPO:0001330"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000002","FYPO:0001320"],"is_obsolete":false,"name":"increased cellular mevalonate level","synonyms":[{"name":"increased cellular mevalonate level during mitotic cell cycle","type":"related"},{"name":"increased cellular mevalonate level during vegetative growth","type":"exact"},{"name":"increased mevalonate accumulation","type":"related"}],"termid":"FYPO:0006132"}


id: PBO:0079007
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-Thr (anticodon TGT) 1-1","termid":"PBO:0079007"}


id: GO:0021888
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of a hypothalamus gonadotrophin-releasing hormone neuron over time, from initial commitment of its fate, to the fully functional differentiated cell.","definition_xrefs":["PMID:12626695","GOC:dgh","GOC:jid","GO_REF:0000021","GOC:cls","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"forebrain neuron development","termid":"GO:0021884"},{"relation_name":"part_of","term_name":"hypothalamus gonadotrophin-releasing hormone neuron differentiation","termid":"GO:0021886"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"hypothalamus gonadotrophin-releasing hormone neuron development","synonyms":[{"name":"hypothalamus gonadotropin-releasing hormone neuron development","type":"related"}],"termid":"GO:0021888"}


id: PBO:0041345
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chromosome 3 open reading frame 62","termid":"PBO:0041345"}


id: GO:0005415
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: nucleoside(out) + Na+(out) = nucleoside(in) + Na+(in).","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nucleoside transmembrane transporter activity","termid":"GO:0005337"},{"relation_name":"is_a","term_name":"solute:sodium symporter activity","termid":"GO:0015370"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0022857"}],"interesting_parent_ids":["GO:0005215","GO:0022857","GO:0003674"],"is_obsolete":false,"name":"nucleoside:sodium symporter activity","secondary_identifiers":["Reactome:R-HSA-109530","Reactome:R-HSA-109538","Reactome:R-HSA-9751037","Reactome:R-HSA-109539","GO:0008522","Reactome:R-HSA-9754934"],"synonyms":[{"name":"nucleoside-sodium cotransporter activity","type":"broad"},{"name":"sodium-dependent nucleoside transporter activity","type":"broad"}],"termid":"GO:0005415"}


id: GO:0021582
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A developmental process, independent of morphogenetic (shape) change, that is required for the medulla oblongata to attain its fully functional state. The medulla oblongata lies directly above the spinal cord and controls vital autonomic functions such as digestion, breathing and the control of heart rate.","definition_xrefs":["GOC:dph","GOC:cls","GO_REF:0000021","GOC:dgh","GOC:jid","ISBN:0838580343"],"direct_ancestors":[{"relation_name":"is_a","term_name":"anatomical structure maturation","termid":"GO:0071695"},{"relation_name":"part_of","term_name":"medulla oblongata development","termid":"GO:0021550"},{"relation_name":"part_of","term_name":"hindbrain maturation","termid":"GO:0021578"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"medulla oblongata maturation","synonyms":[{"name":"myelencephalon maturation","type":"related"},{"name":"medulla maturation","type":"related"}],"termid":"GO:0021582"}


