# refs

id: PMID:31380845
data:
  {"abstract":"Lipid metabolism and its regulation are of interest to both basic and applied life sciences and biotechnology. In this regard, various yeast species are used as models in lipid metabolic research or for industrial lipid production. Lipid droplets are highly dynamic storage bodies and their cellular content represents a convenient readout of the lipid metabolic state. Fluorescence microscopy is a method of choice for quantitative analysis of cellular lipid droplets, as it relies on widely available equipment and allows analysis of individual lipid droplets. Furthermore, microscopic image analysis can be automated, greatly increasing overall analysis throughput. Here, we describe an experimental and analytical workflow for automated detection and quantitative description of individual lipid droplets in three different model yeast species: the fission yeasts Schizosaccharomyces pombe and Schizosaccharomyces japonicus, and the budding yeast Saccharomyces cerevisiae. Lipid droplets are visualized with BODIPY 493/503, and cell-impermeable fluorescent dextran is added to the culture media to help identify cell boundaries. Cells are subjected to 3D epifluorescence microscopy in green and blue channels and the resulting z-stack images are processed automatically by a MATLAB pipeline. The procedure outputs rich quantitative data on cellular lipid droplet content and individual lipid droplet characteristics in a tabular format suitable for downstream analyses in major spreadsheet or statistical packages. We provide example analyses of lipid droplet content under various conditions that affect cellular lipid metabolism.","alleles_by_uniquename":{},"annotation_curators":[],"annotation_details":{},"annotation_file_curators":[],"authors":"Princová J, Schätz M, Ťupa O, Převorovský M","authors_abbrev":"Princová J et al.","canto_added_date":"2021-05-10 08:46:37","canto_curator_role":"JaponicusDB","canto_triage_status":"Method or reagent","citation":"J Vis Exp 2019 07 17;(149)","cv_annotations":{},"doi":"10.3791/59889","gene_count":0,"genes_by_uniquename":{},"genotypes_by_uniquename":{},"ltp_gene_count":0,"ortholog_annotations":[],"paralog_annotations":[],"physical_interactions":[],"publication_year":"2019","pubmed_entrez_date":"2019-08-06","pubmed_publication_date":"17 07 2019","terms_by_termid":{},"title":"Analysis of Lipid Droplet Content in Fission and Budding Yeasts using Automated Image Processing.","uniquename":"PMID:31380845"}


id: PMID:25361970
data:
  {"abstract":"PomBase (http://www.pombase.org) is the model organism database for the fission yeast Schizosaccharomyces pombe. PomBase provides a central hub for the fission yeast community, supporting both exploratory and hypothesis-driven research. It provides users easy access to data ranging from the sequence level, to molecular and phenotypic annotations, through to the display of genome-wide high-throughput studies. Recent improvements to the site extend annotation specificity, improve usability and allow for monthly data updates. Both in-house curators and community researchers provide manually curated data to PomBase. The genome browser provides access to published high-throughput data sets and the genomes of three additional Schizosaccharomyces species (Schizosaccharomyces cryophilus, Schizosaccharomyces japonicus and Schizosaccharomyces octosporus). ","alleles_by_uniquename":{},"annotation_curators":[],"annotation_details":{},"annotation_file_curators":[],"authors":"McDowall MD, Harris MA, Lock A, Rutherford K, Staines DM, Bähler J, Kersey PJ, Oliver SG, Wood V","authors_abbrev":"McDowall MD et al.","canto_added_date":"2021-05-10 08:46:37","canto_curator_role":"JaponicusDB","canto_triage_status":"Database","citation":"Nucleic Acids Res 2015 Jan;43(Database issue):D656-61","cv_annotations":{},"doi":"10.1093/nar/gku1040","gene_count":0,"genes_by_uniquename":{},"genotypes_by_uniquename":{},"ltp_gene_count":0,"ortholog_annotations":[],"paralog_annotations":[],"physical_interactions":[],"publication_year":"2015","pubmed_entrez_date":"2014-11-02","pubmed_publication_date":"Jan 2015","terms_by_termid":{},"title":"PomBase 2015: updates to the fission yeast database.","uniquename":"PMID:25361970"}


id: PMID:23873862
data:
  {"abstract":"Many fungi respond to light and regulate fungal development and behavior. A blue light-activated complex has been identified in Neurospora crassa as the product of the wc-1 and wc-2 genes. Orthologs of WC-1 and WC-2 have hitherto been found only in filamentous fungi and not in yeast, with the exception of the basidiomycete pathogenic yeast Cryptococcus. Here, we report that the fission yeast Schizosaccharomyces japonicus responds to blue light depending on Wcs1 and Wcs2, orthologs of components of the WC complex. Surprisingly, those of ascomycete S. japonicus are more closely related to those of the basidiomycete. S. japonicus reversibly changes from yeast to hyphae in response to environmental stresses. After incubation at 30°C, a colony of yeast was formed, and then hyphal cells extended from the periphery of the colony. When light cycles were applied, distinct dark- and bright-colored hyphal cell stripes were formed because the growing hyphal cells had synchronously activated cytokinesis. In addition, temperature cycles of 30°C for 12 h and 35°C for 12 h or of 25°C for 12 h and 30°C for 12 h during incubation in the dark induced a response in the hyphal cells similar to that of light. The stripe formation of the temperature cycles was independent of the wcs genes. Both light and temperature, which are daily external cues, have the same effect on growing hyphal cells. A dual sensing mechanism of external cues allows organisms to adapt to daily changes of environmental alteration. ","alleles_by_uniquename":{"SJAG_02860:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_02860","name":"wcs1delta","uniquename":"SJAG_02860:allele-1"},"SJAG_05242:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_05242","name":"wcs2delta","uniquename":"SJAG_05242:allele-1"}},"annotation_curators":[{"annotation_count":7,"community_curator":true,"file_name":null,"file_type":null,"name":"Sho Okamoto","orcid":null}],"annotation_details":{},"annotation_file_curators":[],"approved_date":"2022-12-01","authors":"Okamoto S, Furuya K, Nozaki S, Aoki K, Niki H","authors_abbrev":"Okamoto S et al.","canto_added_date":"2021-05-10 08:46:37","canto_annotation_status":"APPROVED","canto_approved_date":"2022-12-01 10:29:08","canto_curator_name":"Sho Okamoto","canto_curator_role":"community","canto_first_approved_date":"2022-12-01 10:29:08","canto_session_key":"0e71b7054e7d7754","canto_session_submitted_date":"2022-12-01 10:28:58","canto_triage_status":"Curatable","citation":"Eukaryot Cell 2013 Sep;12(9):1235-43","cv_annotations":{"biological_process":[{"annotations":[114385,114386],"is_not":false,"summary":null,"term":"GO:0071483"}],"molecular_function":[{"annotations":[114384],"is_not":false,"summary":null,"term":"GO:0009882"}],"single_locus_phenotype":[{"annotations":[114387,114388],"is_not":false,"summary":null,"term":"FYPO:0008031"},{"annotations":[114389,114390],"is_not":false,"summary":null,"term":"FYPO:0008046"}]},"doi":"10.1128/EC.00109-13","gene_count":2,"genes_by_uniquename":{"SJAG_02860":null,"SJAG_05242":null},"genotypes_by_uniquename":{"wcs1delta":{"display_name":"wcs1delta","display_uniquename":"wcs1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_02860:allele-1","expression":"Null"}]}]},"wcs2delta":{"display_name":"wcs2delta","display_uniquename":"wcs2delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_05242:allele-1","expression":"Null"}]}]}},"ltp_gene_count":2,"ortholog_annotations":[],"paralog_annotations":[],"physical_interactions":[],"publication_year":"2013","pubmed_entrez_date":"2013-07-23","pubmed_publication_date":"Sep 2013","terms_by_termid":{"FYECO:0000005":null,"FYECO:0000126":null,"FYPO:0008031":null,"FYPO:0008046":null,"FYPO_EXT:0000001":null,"GO:0009882":null,"GO:0071483":null},"title":"Synchronous activation of cell division by light or temperature stimuli in the dimorphic yeast Schizosaccharomyces japonicus.","uniquename":"PMID:23873862"}


id: PMID:29173643
data:
  {"abstract":"In the beverage fermentation industry, especially at the craft or micro level, there is a movement to incorporate as many local ingredients as possible to both capture terroir and stimulate local economies. In the case of craft beer, this has traditionally only encompassed locally sourced barley, hops, and other agricultural adjuncts. The identification and use of novel yeasts in brewing lags behind. We sought to bridge this gap by bio-prospecting for wild yeasts, with a focus on the American Midwest. We isolated 284 different strains from 54 species of yeast and have begun to determine their fermentation characteristics. During this work, we found several isolates of five species that produce lactic acid and ethanol during wort fermentation: Hanseniaspora vineae, Lachancea fermentati, Lachancea thermotolerans, Schizosaccharomyces japonicus, and Wickerhamomyces anomalus. Tested representatives of these species yielded excellent attenuation, lactic acid production, and sensory characteristics, positioning them as viable alternatives to lactic acid bacteria (LAB) for the production of sour beers. Indeed, we suggest a new LAB-free paradigm for sour beer production that we term \"primary souring\" because the lactic acid production and resultant pH decrease occurs during primary fermentation, as opposed to kettle souring or souring via mixed culture fermentation.","alleles_by_uniquename":{},"annotation_curators":[],"annotation_details":{},"annotation_file_curators":[],"authors":"Osburn K, Amaral J, Metcalf SR, Nickens DM, Rogers CM, Sausen C, Caputo R, Miller J, Li H, Tennessen JM, Bochman ML","authors_abbrev":"Osburn K et al.","canto_added_date":"2021-05-10 08:46:37","canto_curator_role":"JaponicusDB","canto_triage_status":"Biotech","citation":"Food Microbiol 2018 Apr;70:76-84","cv_annotations":{},"doi":"10.1016/j.fm.2017.09.007","gene_count":0,"genes_by_uniquename":{},"genotypes_by_uniquename":{},"ltp_gene_count":0,"ortholog_annotations":[],"paralog_annotations":[],"physical_interactions":[],"publication_year":"2018","pubmed_entrez_date":"2017-11-28","pubmed_publication_date":"Apr 2018","terms_by_termid":{},"title":"Primary souring: A novel bacteria-free method for sour beer production.","uniquename":"PMID:29173643"}


id: PMID:34353908
data:
  {"abstract":"Biosynthesis of sterols, which are key constituents of canonical eukaryotic membranes, requires molecular oxygen. Anaerobic protists and deep-branching anaerobic fungi are the only eukaryotes in which a mechanism for sterol-independent growth has been elucidated. In these organisms, tetrahymanol, formed through oxygen-independent cyclization of squalene by a squalene-tetrahymanol cyclase, acts as a sterol surrogate. This study confirms an early report [C. J. E. A. Bulder,  Antonie Van Leeuwenhoek , 37, 353-358 (1971)] that  Schizosaccharomyces japonicus  is exceptional among yeasts in growing anaerobically on synthetic media lacking sterols and unsaturated fatty acids. Mass spectrometry of lipid fractions of anaerobically grown  Sch. japonicus  showed the presence of hopanoids, a class of cyclic triterpenoids not previously detected in yeasts, including hop-22(29)-ene, hop-17(21)-ene, hop-21(22)-ene, and hopan-22-ol. A putative gene in  Sch. japonicus  showed high similarity to bacterial squalene-hopene cyclase (SHC) genes and in particular to those of  Acetobacter  species. No orthologs of the putative  Sch. japonicus  SHC were found in other yeast species. Expression of the  Sch. japonicus  SHC gene ( Sjshc1 ) in  Saccharomyces cerevisiae  enabled hopanoid synthesis and stimulated anaerobic growth in sterol-free media, thus indicating that one or more of the hopanoids produced by SjShc1 could at least partially replace sterols. Use of hopanoids as sterol surrogates represents a previously unknown adaptation of eukaryotic cells to anaerobic growth. The fast anaerobic growth of  Sch. japonicus  in sterol-free media is an interesting trait for developing robust fungal cell factories for application in anaerobic industrial processes.","alleles_by_uniquename":{},"annotation_curators":[],"annotation_details":{},"annotation_file_curators":[],"authors":"Bouwknegt J, Wiersma SJ, Ortiz-Merino RA, Doornenbal ESR, Buitenhuis P, Giera M, Müller C, Pronk JT","authors_abbrev":"Bouwknegt J et al.","canto_added_date":"2023-05-04 00:40:04","canto_curator_role":"JaponicusDB","canto_triage_status":"Cell composition or WT feature","citation":"Proc Natl Acad Sci U S A 2021 Aug 10;118(32)","cv_annotations":{},"doi":"10.1073/pnas.2105225118","gene_count":0,"genes_by_uniquename":{},"genotypes_by_uniquename":{},"ltp_gene_count":0,"ortholog_annotations":[],"paralog_annotations":[],"physical_interactions":[],"publication_year":"2021","pubmed_entrez_date":"2021-08-06","pubmed_publication_date":"10 Aug 2021","terms_by_termid":{},"title":"A squalene-hopene cyclase in  Schizosaccharomyces japonicus  represents a eukaryotic adaptation to sterol-limited anaerobic environments.","uniquename":"PMID:34353908"}


id: PMID:32243490
data:
  {"abstract":"The nuclear envelope (NE) undergoes dynamic remodeling to maintain NE integrity, a process involving the inner nuclear membrane protein LEM2 recruiting CHMP7/Cmp7 and then ESCRT-III. However, prior work has hinted at CHMP7/ESCRT-independent mechanisms. To identify such mechanisms, we studied NE assembly in Schizosaccharomyces japonicus, a fission yeast that undergoes partial mitotic NE breakdown and reassembly. S. japonicus cells lacking Cmp7 have compromised NE sealing after mitosis but are viable. A genetic screen identified mutations that promote NE integrity in cmp7Δ cells. Unexpectedly, loss of Lem2 or its interacting partner Nur1 suppressed cmp7Δ defects. In the absence of Cmp7, Lem2 formed aggregates that appear to interfere with ESCRT-independent NE sealing. A gain-of-function mutation implicated a membrane and ESCRT-III regulator, Alx1, in this alternate pathway. Additional results suggest a potentially general role for unsaturated fatty acids in NE integrity. These findings establish the existence of mechanisms for NE sealing independent of the canonical ESCRT pathway.","alleles_by_uniquename":{"SJAG_01242:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_01242","name":"vps32delta","uniquename":"SJAG_01242:allele-1"},"SJAG_01745:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_01745","name":"lem2delta","uniquename":"SJAG_01745:allele-1"},"SJAG_03891:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_03891","name":"alx1delta","uniquename":"SJAG_03891:allele-1"},"SJAG_05207:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_05207","name":"cmp7delta","uniquename":"SJAG_05207:allele-1"}},"annotation_curators":[{"annotation_count":21,"community_curator":false,"file_name":null,"file_type":null,"name":"Snezhana Oliferenko","orcid":"0000-0002-8138-6851"},{"annotation_count":4,"community_curator":false,"file_name":null,"file_type":null,"name":"Val Wood","orcid":"0000-0001-6330-7526"}],"annotation_details":{},"annotation_file_curators":[],"approved_date":"2021-07-09","authors":"Lee IJ, Stokasimov E, Dempsey N, Varberg JM, Jacob E, Jaspersen SL, Pellman D","authors_abbrev":"Lee IJ et al.","canto_added_date":"2021-05-10 08:46:37","canto_annotation_status":"APPROVED","canto_approved_date":"2021-07-14 11:10:55","canto_curator_name":"Snezhana Oliferenko","canto_curator_role":"JaponicusDB","canto_first_approved_date":"2021-07-09 15:55:25","canto_session_key":"e134ba05c345c3f5","canto_session_submitted_date":"2021-07-09 15:55:19","canto_triage_status":"Curatable","citation":"J Cell Biol 2020 06 01;219(6)","cv_annotations":{"biological_process":[{"annotations":[114552,114553,114554,114555],"is_not":false,"summary":null,"term":"GO:0007084"}],"cellular_component":[{"annotations":[114551],"is_not":false,"summary":null,"term":"GO:0005783"},{"annotations":[114537,114539,114549],"is_not":false,"summary":null,"term":"GO:0044732"},{"annotations":[114538,114540,114548],"is_not":false,"summary":null,"term":"GO:0005635"}],"single_locus_phenotype":[{"annotations":[114541],"is_not":false,"summary":null,"term":"FYPO:0001375"},{"annotations":[114546],"is_not":false,"summary":null,"term":"FYPO:0000080"},{"annotations":[114542,114543,114550],"is_not":false,"summary":null,"term":"FYPO:0007772"},{"annotations":[114547],"is_not":false,"summary":null,"term":"FYPO:0000714"},{"annotations":[114544,114545],"is_not":false,"summary":null,"term":"FYPO:0001234"}]},"doi":"10.1083/jcb.201908232","gene_count":6,"genes_by_uniquename":{"SJAG_01050":null,"SJAG_01242":null,"SJAG_01745":null,"SJAG_03891":null,"SJAG_03943":null,"SJAG_05207":null},"genetic_interactions":[[{"gene_a_uniquename":"SJAG_01242","gene_b_uniquename":"SJAG_01745","interaction_type":"Phenotypic Suppression"},[{"reference_uniquename":"PMID:32243490","throughput":"low"}]],[{"gene_a_uniquename":"SJAG_05207","gene_b_uniquename":"SJAG_01745","interaction_type":"Phenotypic Suppression"},[{"reference_uniquename":"PMID:32243490","throughput":"low"}]],[{"gene_a_uniquename":"SJAG_01242","gene_b_uniquename":"SJAG_03891","interaction_type":"Phenotypic Enhancement"},[{"reference_uniquename":"PMID:32243490","throughput":"low"}]],[{"gene_a_uniquename":"SJAG_01242","gene_b_uniquename":"SJAG_01050","interaction_type":"Phenotypic Suppression"},[{"reference_uniquename":"PMID:32243490","throughput":"low"}]],[{"gene_a_uniquename":"SJAG_01745","gene_b_uniquename":"SJAG_01050","interaction_type":"Phenotypic Suppression"},[{"reference_uniquename":"PMID:32243490","throughput":"low"}]],[{"gene_a_uniquename":"SJAG_05207","gene_b_uniquename":"SJAG_03943","interaction_type":"Dosage Rescue"},[{"reference_uniquename":"PMID:32243490","throughput":"low"}]]],"genotypes_by_uniquename":{"alx1delta":{"display_name":"alx1delta","display_uniquename":"alx1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03891:allele-1","expression":"Null"}]}]},"cmp7delta":{"display_name":"cmp7delta","display_uniquename":"cmp7delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_05207:allele-1","expression":"Null"}]}]},"lem2delta":{"display_name":"lem2delta","display_uniquename":"lem2delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01745:allele-1","expression":"Null"}]}]},"vps32delta":{"display_name":"vps32delta","display_uniquename":"vps32delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01242:allele-1","expression":"Null"}]}]}},"ltp_gene_count":6,"ortholog_annotations":[],"paralog_annotations":[],"physical_interactions":[],"publication_year":"2020","pubmed_entrez_date":"2020-04-04","pubmed_publication_date":"01 06 2020","terms_by_termid":{"FYECO:0000006":null,"FYPO:0000080":null,"FYPO:0000714":null,"FYPO:0001234":null,"FYPO:0001375":null,"FYPO:0007772":null,"FYPO_EXT:0000001":null,"FYPO_EXT:0000003":null,"GO:0005635":null,"GO:0005783":null,"GO:0007084":null,"GO:0044732":null},"title":"Factors promoting nuclear envelope assembly independent of the canonical ESCRT pathway.","uniquename":"PMID:32243490"}


id: PMID:1093
data:
  {"abstract":"(11 Cell extracts and extracellular culture fluids of species of the yeast genus Schizosaccharomyces exhibited exo-beta-(1 leads to 3)- and exo-beta-(1 leads to 6)-glucanase (EC 3.2.1.-) activities. (2) Using a combination of Sephadex G-100 and DEAE-cellulose chromatography, the exo-beta-(1 leads to 3)-glucanases from the cell extracts and culture fluid of Schizosaccharomyces japonicus var. versatilis were purified extensively. The enzymes from either location exhibited similar purification and other properties. (3) The purified enzymes hydrolysed the beta-(1 leads to 6)-glucosidic linkage in addition to the beta-(1 leads to 3) linkage. Heat denaturation, inhibition and electrophoretic studies indicated that both hydrolytic activities were properties of a single protein. Laminarin and pustulan hydrolysis followed Michaelis-Menten kinetics. The Km and V for laminarin hydrolysis were 6.25 mg/ml and 350 mumol of glucose released/min/mg protein, and for pustulan they were 166 mg/ml and 52 mumol of glucose released/min/mg protein. (4) The exo-beta-glucanase was assigned a molecular weight of 43 000. (5) the purified enzyme failed to hydrolyse isolated cell walls from either baker's yeast or Schizosaccharomyces pombe or to induce protoplast formation from intact cells of S. japonicus var. versatilis or Saccharomyces cerevisiae.","alleles_by_uniquename":{},"annotation_curators":[],"annotation_details":{},"annotation_file_curators":[],"authors":"Fleet GH, Phaff HJ","authors_abbrev":"Fleet GH et al.","canto_added_date":"2021-05-10 08:46:37","canto_curator_role":"JaponicusDB","canto_triage_status":"Cell composition or WT feature","citation":"Biochim Biophys Acta 1975 Dec 18;410(2):318-32","cv_annotations":{},"gene_count":0,"genes_by_uniquename":{},"genotypes_by_uniquename":{},"ltp_gene_count":0,"ortholog_annotations":[],"paralog_annotations":[],"physical_interactions":[],"publication_year":"1975","pubmed_entrez_date":"1975-12-18","pubmed_publication_date":"18 Dec 1975","terms_by_termid":{},"title":"Glucanases in Schizosaccharomyces. Isolation and properties of an exo-beta-glucanase from the cell extracts and culture fluid of Schizosaccharomyces japonicus var. versatilis.","uniquename":"PMID:1093"}


id: PMID:22531001
data:
  {"abstract":"DNA replication initiates at distinct origins in eukaryotic genomes, but the genomic features that define these sites are not well understood.\nWe have taken a combined experimental and bioinformatic approach to identify and characterize origins of replication in three distantly related fission yeasts: Schizosaccharomyces pombe, Schizosaccharomyces octosporus and Schizosaccharomyces japonicus. Using single-molecule deep sequencing to construct amplification-free high-resolution replication profiles, we located origins and identified sequence motifs that predict origin function. We then mapped nucleosome occupancy by deep sequencing of mononucleosomal DNA from the corresponding species, finding that origins tend to occupy nucleosome-depleted regions.\nThe sequences that specify origins are evolutionarily plastic, with low complexity nucleosome-excluding sequences functioning in S. pombe and S. octosporus, and binding sites for trans-acting nucleosome-excluding proteins functioning in S. japonicus. Furthermore, chromosome-scale variation in replication timing is conserved independently of origin location and via a mechanism distinct from known heterochromatic effects on origin function. These results are consistent with a model in which origins are simply the nucleosome-depleted regions of the genome with the highest affinity for the origin recognition complex. This approach provides a general strategy for understanding the mechanisms that define DNA replication origins in eukaryotes.","alleles_by_uniquename":{},"annotation_curators":[],"annotation_details":{},"annotation_file_curators":[],"authors":"Xu J, Yanagisawa Y, Tsankov AM, Hart C, Aoki K, Kommajosyula N, Steinmann KE, Bochicchio J, Russ C, Regev A, Rando OJ, Nusbaum C, Niki H, Milos P, Weng Z, Rhind N","authors_abbrev":"Xu J et al.","canto_added_date":"2021-05-10 08:46:37","canto_curator_role":"JaponicusDB","canto_triage_status":"Sequence feature or region","citation":"Genome Biol 2012 Apr 24;13(4):R27","cv_annotations":{},"doi":"10.1186/gb-2012-13-4-r27","gene_count":0,"genes_by_uniquename":{},"genotypes_by_uniquename":{},"ltp_gene_count":0,"ortholog_annotations":[],"paralog_annotations":[],"physical_interactions":[],"publication_year":"2012","pubmed_entrez_date":"2012-04-26","pubmed_publication_date":"24 Apr 2012","terms_by_termid":{},"title":"Genome-wide identification and characterization of replication origins by deep sequencing.","uniquename":"PMID:22531001"}


id: PMID:22300943
data:
  {"abstract":"The fission yeasts (Schizosaccharomyces) representing a highly divergent phylogenetic branch of Fungi evolved from filamentous ancestors by gradual transition from mycelial growth to yeast morphology. For the transition, a mechanism had been developed that separates the sister cells after the completion of cytokinesis. Numerous components of the separation mechanism have been characterised in Schizosaccharomycespombe, including the zinc-finger transcription factor Ace2p and the fork-head transcription factor Sep1p. Here we show that both regulators have regions conserved within the genus. The most conserved parts contain the DNA-binding domains whose amino-acid sequences perfectly reflect the phylogenetic positions of the species. The less conserved parts of the proteins contain sequence blocks specific for the whole genus or only for the species propagating predominantly or exclusively as yeasts. Inactivation of either gene in the dimorphic species Schizosaccharomycesjaponicus abolished cell separation in the yeast phase conferring hypha-like morphology but did not change the growth pattern to unipolar and did not cause extensive polar vacuolation characteristic of the true mycelium. Neither mutation affected the mycelial phase, but both mutations hampered the hyphal fragmentation at the mycelium-to-yeast transition. Ace2p(Sj) acts downstream of Sep1p(Sj) and regulates the orthologues of the Ace2p-dependent S.pombe genes agn1(+) (1,3-alpha-glucanase) and eng1(+) (1,3-beta-glucanase) but does not regulate the orthologue of cfh4(+) (chitin synthase regulatory factor). These results and the complementation of the cell separation defects of the ace2(-) and sep1(-) mutations of S.pombe by heterologously expressed ace2(Sj) and sep1(Sj) indicate that the cell separation mechanism is conserved in the Schizosaccharomyces genus.","alleles_by_uniquename":{"SJAG_02252:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_02252","name":"ace2delta","uniquename":"SJAG_02252:allele-1"},"SJAG_03143:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_03143","name":"sep1delta","uniquename":"SJAG_03143:allele-1"}},"annotation_curators":[{"annotation_count":7,"community_curator":false,"file_name":null,"file_type":null,"name":"Snezhana Oliferenko","orcid":null}],"annotation_details":{},"annotation_file_curators":[],"approved_date":"2022-12-09","authors":"Balazs A, Batta G, Miklos I, Acs-Szabo L, Vazquez de Aldana CR, Sipiczki M","authors_abbrev":"Balazs A et al.","canto_added_date":"2022-12-09 17:19:01","canto_annotation_status":"APPROVED","canto_approved_date":"2022-12-09 17:39:12","canto_curator_name":"Snezhana Oliferenko","canto_curator_role":"JaponicusDB","canto_first_approved_date":"2022-12-09 17:39:12","canto_session_key":"f106e12e6366fbad","canto_session_submitted_date":"2022-12-09 17:38:34","canto_triage_status":"Curatable","citation":"Fungal Genet Biol 2012 Mar;49(3):235-49","cv_annotations":{"single_locus_phenotype":[{"annotations":[114529,114530],"is_not":false,"summary":null,"term":"FYPO:0006557"}]},"doi":"10.1016/j.fgb.2012.01.003","gene_count":2,"genes_by_uniquename":{"SJAG_02252":null,"SJAG_03143":null},"genotypes_by_uniquename":{"ace2delta":{"display_name":"ace2delta","display_uniquename":"ace2delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_02252:allele-1","expression":"Null"}]}]},"sep1delta":{"display_name":"sep1delta","display_uniquename":"sep1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03143:allele-1","expression":"Null"}]}]}},"ltp_gene_count":2,"ortholog_annotations":[],"paralog_annotations":[],"physical_interactions":[],"publication_year":"2012","pubmed_entrez_date":"2012-02-04","pubmed_publication_date":"Mar 2012","terms_by_termid":{"FYECO:0000137":null,"FYPO:0006557":null,"FYPO_EXT:0000001":null,"FYPO_EXT:0000002":null},"title":"Conserved regulators of the cell separation process in Schizosaccharomyces.","uniquename":"PMID:22300943"}


id: PMID:28655757
data:
  {"abstract":"Cytokinesis in many eukaryotes involves a tension-generating actomyosin-based contractile ring. Many components of actomyosin rings turn over during contraction, although the significance of this turnover has remained enigmatic. Here, using  Schizosaccharomyces japonicus , we investigate the role of turnover of actin and myosin II in its contraction. Actomyosin ring components self-organize into ∼1-µm-spaced clusters instead of undergoing full-ring contraction in the absence of continuous actin polymerization. This effect is reversed when actin filaments are stabilized. We tested the idea that the function of turnover is to ensure actin filament homeostasis in a synthetic system, in which we abolished turnover by fixing rings in cell ghosts with formaldehyde. We found that these rings contracted fully upon exogenous addition of a vertebrate myosin. We conclude that actin turnover is required to maintain actin filament homeostasis during ring contraction and that the requirement for turnover can be bypassed if homeostasis is achieved artificially.","alleles_by_uniquename":{},"annotation_curators":[{"annotation_count":5,"community_curator":false,"file_name":null,"file_type":null,"name":"Snezhana Oliferenko","orcid":"0000-0002-8138-6851"}],"annotation_details":{},"annotation_file_curators":[],"approved_date":"2021-07-09","authors":"Chew TG, Huang J, Palani S, Sommese R, Kamnev A, Hatano T, Gu Y, Oliferenko S, Sivaramakrishnan S, Balasubramanian MK","authors_abbrev":"Chew TG et al.","canto_added_date":"2021-05-10 08:46:37","canto_annotation_status":"APPROVED","canto_approved_date":"2021-07-09 13:45:34","canto_curator_name":"Snezhana Oliferenko","canto_curator_role":"JaponicusDB","canto_first_approved_date":"2021-07-09 13:45:34","canto_session_key":"5ead7a365a97d8ab","canto_session_submitted_date":"2021-07-09 13:45:28","canto_triage_status":"Curatable","citation":"J Cell Biol 2017 09 04;216(9):2657-2667","cv_annotations":{"cellular_component":[{"annotations":[114379,114380,114381,114382,114383],"is_not":false,"summary":null,"term":"GO:0005826"}]},"doi":"10.1083/jcb.201701104","gene_count":5,"genes_by_uniquename":{"SJAG_01665":null,"SJAG_02431":null,"SJAG_03596":null,"SJAG_03703":null,"SJAG_04498":null},"genotypes_by_uniquename":{},"ltp_gene_count":5,"ortholog_annotations":[],"paralog_annotations":[],"physical_interactions":[],"publication_year":"2017","pubmed_entrez_date":"2017-06-29","pubmed_publication_date":"04 09 2017","terms_by_termid":{"GO:0005826":null},"title":"Actin turnover maintains actin filament homeostasis during cytokinetic ring contraction.","uniquename":"PMID:28655757"}


id: PMID:37279666
data:
  {"abstract":"A new study finds that Schizosaccharomyces japonicus, a eukaryote that lost the ability to respire, modified its central carbon metabolism to maintain efficient ATP production, cofactor regeneration, and amino-acid production. This remarkable metabolic flexibility opens new avenues towards applications.","alleles_by_uniquename":{},"annotation_curators":[],"annotation_details":{},"annotation_file_curators":[],"authors":"Cool L, Hanon S, Verstrepen KJ","authors_abbrev":"Cool L et al.","canto_added_date":"2023-06-08 00:40:04","canto_curator_role":"JaponicusDB","canto_triage_status":"Review or comment","citation":"Curr Biol 2023 Jun 05;33(11):R444-R447","cv_annotations":{},"doi":"10.1016/j.cub.2023.05.002","gene_count":0,"genes_by_uniquename":{},"genotypes_by_uniquename":{},"ltp_gene_count":0,"ortholog_annotations":[],"paralog_annotations":[],"physical_interactions":[],"publication_year":"2023","pubmed_entrez_date":"2023-06-06","pubmed_publication_date":"05 Jun 2023","terms_by_termid":{},"title":"Metabolism: How a eukaryote adapted to life without respiration.","uniquename":"PMID:37279666"}


id: PMID:33495454
data:
  {"abstract":"The endoplasmic reticulum (ER) network consists of tubules with high membrane curvature in cross-section, generated by the reticulons and REEPs. These proteins have two pairs of trans-membrane (TM) segments, followed by an amphipathic helix (APH), but how they induce curvature is poorly understood. Here, we show that REEPs form homodimers by interaction within the membrane. When overexpressed or reconstituted at high concentrations with phospholipids, REEPs cause extreme curvature through their TMs, generating lipoprotein particles instead of vesicles. The APH facilitates curvature generation, as its mutation prevents ER network formation of reconstituted proteoliposomes, and synthetic L- or D-amino acid peptides abolish ER network formation in Xenopus egg extracts. In Schizosaccharomyces japonicus, the APH is required for reticulon's exclusive ER-tubule localization and restricted mobility. Thus, the TMs and APH cooperate to generate high membrane curvature. We propose that the formation of splayed REEP/reticulon dimers is responsible for ER tubule formation.","alleles_by_uniquename":{"SJAG_01374:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_01374","name":"nup132delta","uniquename":"SJAG_01374:allele-1"}},"annotation_curators":[{"annotation_count":8,"community_curator":false,"file_name":null,"file_type":null,"name":"Snezhana Oliferenko","orcid":"0000-0002-8138-6851"}],"annotation_details":{},"annotation_file_curators":[],"approved_date":"2021-07-09","authors":"Wang N, Clark LD, Gao Y, Kozlov MM, Shemesh T, Rapoport TA","authors_abbrev":"Wang N et al.","canto_added_date":"2021-05-10 08:46:37","canto_annotation_status":"APPROVED","canto_approved_date":"2021-07-09 16:24:24","canto_curator_name":"Snezhana Oliferenko","canto_curator_role":"JaponicusDB","canto_first_approved_date":"2021-07-09 16:24:24","canto_session_key":"23c6ae79d435aba5","canto_session_submitted_date":"2021-07-09 16:24:16","canto_triage_status":"Curatable","citation":"Nat Commun 2021 01 25;12(1):568","cv_annotations":{"biological_process":[{"annotations":[114391,114397],"is_not":false,"summary":null,"term":"GO:0097753"}],"cellular_component":[{"annotations":[114392,114393],"is_not":false,"summary":null,"term":"GO:0032541"},{"annotations":[114394,114395],"is_not":false,"summary":null,"term":"GO:0005643"}],"single_locus_phenotype":[{"annotations":[114396],"is_not":false,"summary":null,"term":"FYPO:0003973"}]},"doi":"10.1038/s41467-020-20625-y","gene_count":4,"genes_by_uniquename":{"SJAG_01374":null,"SJAG_01834":null,"SJAG_01848":null,"SJAG_03795":null},"genotypes_by_uniquename":{"nup132delta":{"display_name":"nup132delta","display_uniquename":"nup132delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01374:allele-1","expression":"Null"}]}]}},"ltp_gene_count":4,"ortholog_annotations":[],"paralog_annotations":[],"physical_interactions":[{"evidence":"Reconstituted Complex","gene_uniquename":"SJAG_03795","interactor_uniquename":"SJAG_03795","reference_uniquename":"PMID:33495454","throughput":"low"}],"publication_year":"2021","pubmed_entrez_date":"2021-01-26","pubmed_publication_date":"25 01 2021","terms_by_termid":{"FYPO:0003973":null,"GO:0005643":null,"GO:0032541":null,"GO:0097753":null},"title":"Mechanism of membrane-curvature generation by ER-tubule shaping proteins.","uniquename":"PMID:33495454"}


# genotypes

id: scd1delta
data:
  {"alleles_by_uniquename":{"SJAG_00514:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_00514","name":"scd1delta","uniquename":"SJAG_00514:allele-1"}},"annotation_count":6,"annotation_details":{},"comment":null,"cv_annotations":{"single_locus_phenotype":[{"annotations":[114177],"is_not":false,"summary":null,"term":"FYPO:0007789"},{"annotations":[114280],"is_not":false,"summary":null,"term":"FYPO:0004105"},{"annotations":[114179],"is_not":false,"summary":null,"term":"FYPO:0001355"},{"annotations":[114281],"is_not":false,"summary":null,"term":"FYPO:0001234"},{"annotations":[114180],"is_not":false,"summary":null,"term":"FYPO:0000280"},{"annotations":[114178],"is_not":false,"summary":null,"term":"FYPO:0002380"}]},"display_name":"scd1delta","display_uniquename":"scd1delta","genes_by_uniquename":{"SJAG_00514":null},"genotypes_by_uniquename":{"scd1delta":{"display_name":"scd1delta","display_uniquename":"scd1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_00514:allele-1","expression":"Null"}]}]}},"loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_00514:allele-1","expression":"Null"}]}],"ploidiness":"haploid","references_by_uniquename":{"PMID:29566183":null,"PMID:30664646":null},"taxonid":4897,"terms_by_termid":{"FYECO:0000005":null,"FYECO:0000103":null,"FYECO:0000137":null,"FYPO:0000280":null,"FYPO:0001234":null,"FYPO:0001355":null,"FYPO:0002380":null,"FYPO:0004105":null,"FYPO:0007789":null,"FYPO_EXT:0000001":null}}


id: leo1delta
data:
  {"alleles_by_uniquename":{},"annotation_count":0,"annotation_details":{},"comment":null,"cv_annotations":{},"display_name":"leo1delta","display_uniquename":"leo1delta","genes_by_uniquename":{},"genotypes_by_uniquename":{},"loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03118:allele-1","expression":"Null"}]}],"ploidiness":"haploid","references_by_uniquename":{},"taxonid":4897,"terms_by_termid":{}}


id: nem1delta
data:
  {"alleles_by_uniquename":{"SJAG_01906:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_01906","name":"nem1delta","uniquename":"SJAG_01906:allele-1"}},"annotation_count":2,"annotation_details":{},"comment":null,"cv_annotations":{"single_locus_phenotype":[{"annotations":[114224],"is_not":false,"summary":null,"term":"FYPO:0001784"},{"annotations":[114223],"is_not":false,"summary":null,"term":"FYPO:0001556"}]},"display_name":"nem1delta","display_uniquename":"nem1delta","genes_by_uniquename":{"SJAG_01906":null},"genotypes_by_uniquename":{"nem1delta":{"display_name":"nem1delta","display_uniquename":"nem1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01906:allele-1","expression":"Null"}]}]}},"loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01906:allele-1","expression":"Null"}]}],"ploidiness":"haploid","references_by_uniquename":{"PMID:26774782":null},"taxonid":4897,"terms_by_termid":{"FYPO:0001556":null,"FYPO:0001784":null,"FYPO_EXT:0000001":null}}


id: mid2delta
data:
  {"alleles_by_uniquename":{"SJAG_00118:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_00118","name":"mid2delta","uniquename":"SJAG_00118:allele-1"}},"annotation_count":1,"annotation_details":{},"comment":null,"cv_annotations":{"single_locus_phenotype":[{"annotations":[114559],"is_not":false,"summary":null,"term":"FYPO:0000118"}]},"display_name":"mid2delta","display_uniquename":"mid2delta","genes_by_uniquename":{"SJAG_00118":null},"genotypes_by_uniquename":{"mid2delta":{"display_name":"mid2delta","display_uniquename":"mid2delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_00118:allele-1","expression":"Null"}]}]}},"loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_00118:allele-1","expression":"Null"}]}],"ploidiness":"haploid","references_by_uniquename":{"PMID:25866389":null},"taxonid":4897,"terms_by_termid":{"FYECO:0000005":null,"FYECO:0000137":null,"FYPO:0000118":null}}


id: spk1delta
data:
  {"alleles_by_uniquename":{"SJAG_02923:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_02923","name":"spk1delta","uniquename":"SJAG_02923:allele-1"}},"annotation_count":3,"annotation_details":{},"comment":null,"cv_annotations":{"single_locus_phenotype":[{"annotations":[114193],"is_not":false,"summary":null,"term":"FYPO:0007773"},{"annotations":[114191],"is_not":false,"summary":null,"term":"FYPO:0000280"},{"annotations":[114192],"is_not":false,"summary":null,"term":"FYPO:0000124"}]},"display_name":"spk1delta","display_uniquename":"spk1delta","genes_by_uniquename":{"SJAG_02923":null},"genotypes_by_uniquename":{"spk1delta":{"display_name":"spk1delta","display_uniquename":"spk1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_02923:allele-1","expression":"Null"}]}]}},"loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_02923:allele-1","expression":"Null"}]}],"ploidiness":"haploid","references_by_uniquename":{"PMID:29566183":null},"taxonid":4897,"terms_by_termid":{"FYECO:0000137":null,"FYPO:0000124":null,"FYPO:0000280":null,"FYPO:0007773":null,"FYPO_EXT:0000001":null,"FYPO_EXT:0000002":null}}


id: rga4delta__wee1-as8-T582G-amino_acid_mutation-expression-not_assayed_or_wild_type
data:
  {"alleles_by_uniquename":{"SJAG_04280:allele-1":{"allele_type":"amino_acid_mutation","description":"T582G","gene_uniquename":"SJAG_04280","name":"wee1-as8","uniquename":"SJAG_04280:allele-1"},"SJAG_04522:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_04522","name":"rga4delta","uniquename":"SJAG_04522:allele-1"}},"annotation_count":2,"annotation_details":{},"comment":null,"cv_annotations":{"multi_locus_phenotype":[{"annotations":[114285],"is_not":false,"summary":null,"term":"FYPO:0007783"},{"annotations":[114287],"is_not":false,"summary":null,"term":"FYPO:0001369"}]},"display_name":"rga4delta wee1-as8(T582G aa)","display_uniquename":"rga4delta__wee1-as8-T582G-amino_acid_mutation-expression-not_assayed_or_wild_type","genes_by_uniquename":{"SJAG_04280":null,"SJAG_04522":null},"genotypes_by_uniquename":{"rga4delta__wee1-as8-T582G-amino_acid_mutation-expression-not_assayed_or_wild_type":{"display_name":"rga4delta wee1-as8(T582G aa)","display_uniquename":"rga4delta__wee1-as8-T582G-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04522:allele-1","expression":"Null"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_04280:allele-1","expression":"Not assayed or wild type"}]}]}},"loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04522:allele-1","expression":"Null"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_04280:allele-1","expression":"Not assayed or wild type"}]}],"ploidiness":"haploid","references_by_uniquename":{"PMID:30664646":null},"taxonid":4897,"terms_by_termid":{"FYECO:0000005":null,"FYECO:0000137":null,"FYECO:0000338":null,"FYPO:0001369":null,"FYPO:0007783":null,"FYPO_EXT:0000001":null}}


id: ade6delta
data:
  {"alleles_by_uniquename":{"SJAG_01081:allele-3":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_01081","name":"ade6delta","uniquename":"SJAG_01081:allele-3"}},"annotation_count":1,"annotation_details":{},"comment":null,"cv_annotations":{"single_locus_phenotype":[{"annotations":[114557],"is_not":false,"summary":null,"term":"FYPO:0000747"}]},"display_name":"ade6delta","display_uniquename":"ade6delta","genes_by_uniquename":{"SJAG_01081":null},"genotypes_by_uniquename":{"ade6delta":{"display_name":"ade6delta","display_uniquename":"ade6delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01081:allele-3","expression":"Null"}]}]}},"loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01081:allele-3","expression":"Null"}]}],"ploidiness":"haploid","references_by_uniquename":{"PMID:21905090":null},"taxonid":4897,"terms_by_termid":{"FYPO:0000747":null}}


id: chk1-P470L-P470L-amino_acid_mutation-expression-not_assayed_or_wild_type__rad24delta
data:
  {"alleles_by_uniquename":{"SJAG_01680:allele-2":{"allele_type":"amino_acid_mutation","description":"P470L","gene_uniquename":"SJAG_01680","name":"chk1-P470L","synonyms":[{"name":"chk1- hyperactive (chk1-hyp)","reference":"PMID:23090706","type":"exact"},{"name":"chk1-hyperactive (chk1-hyp)","reference":"PMID:20368354","type":"exact"}],"uniquename":"SJAG_01680:allele-2"},"SJAG_02266:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_02266","name":"rad24delta","uniquename":"SJAG_02266:allele-1"}},"annotation_count":1,"annotation_details":{},"comment":null,"cv_annotations":{"multi_locus_phenotype":[{"annotations":[114608],"is_not":false,"summary":null,"term":"FYPO:0007790"}]},"display_name":"chk1-P470L(aa) rad24delta","display_uniquename":"chk1-P470L-P470L-amino_acid_mutation-expression-not_assayed_or_wild_type__rad24delta","genes_by_uniquename":{"SJAG_01680":null,"SJAG_02266":null},"genotypes_by_uniquename":{"chk1-P470L-P470L-amino_acid_mutation-expression-not_assayed_or_wild_type__rad24delta":{"display_name":"chk1-P470L(aa) rad24delta","display_uniquename":"chk1-P470L-P470L-amino_acid_mutation-expression-not_assayed_or_wild_type__rad24delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01680:allele-2","expression":"Not assayed or wild type"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_02266:allele-1","expression":"Null"}]}]}},"loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01680:allele-2","expression":"Not assayed or wild type"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_02266:allele-1","expression":"Null"}]}],"ploidiness":"haploid","references_by_uniquename":{"PMID:20368354":null,"PMID:23090706":null},"taxonid":4897,"terms_by_termid":{"FYECO:0000005":null,"FYECO:0000137":null,"FYPO:0007790":null}}


id: ned1delta
data:
  {"alleles_by_uniquename":{"SJAG_02763:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_02763","name":"ned1delta","uniquename":"SJAG_02763:allele-1"}},"annotation_count":3,"annotation_details":{},"comment":null,"cv_annotations":{"single_locus_phenotype":[{"annotations":[114225],"is_not":false,"summary":null,"term":"FYPO:0001784"},{"annotations":[114222],"is_not":false,"summary":null,"term":"FYPO:0001556"},{"annotations":[114229],"is_not":false,"summary":null,"term":"FYPO:0001234"}]},"display_name":"ned1delta","display_uniquename":"ned1delta","genes_by_uniquename":{"SJAG_02763":null},"genotypes_by_uniquename":{"ned1delta":{"display_name":"ned1delta","display_uniquename":"ned1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_02763:allele-1","expression":"Null"}]}]}},"loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_02763:allele-1","expression":"Null"}]}],"ploidiness":"haploid","references_by_uniquename":{"PMID:26774782":null},"taxonid":4897,"terms_by_termid":{"FYECO:0000005":null,"FYECO:0000162":null,"FYPO:0001234":null,"FYPO:0001556":null,"FYPO:0001784":null,"FYPO_EXT:0000001":null}}


id: frameshift-aa61->stop-nonsense_mutation-expression-not_assayed_or_wild_type
data:
  {"alleles_by_uniquename":{},"annotation_count":0,"annotation_details":{},"comment":null,"cv_annotations":{},"display_name":"frameshift(aa61->stop)","display_uniquename":"frameshift-aa61->stop-nonsense_mutation-expression-not_assayed_or_wild_type","genes_by_uniquename":{},"genotypes_by_uniquename":{},"loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03118:allele-2","expression":"Not assayed or wild type"}]}],"ploidiness":"haploid","references_by_uniquename":{},"taxonid":4897,"terms_by_termid":{}}


id: clr4delta__leo1delta
data:
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id: apc2-361-E548K_ts-amino_acid_mutation-expression-not_assayed_or_wild_type__cem1delta
data:
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id: arb2delta
data:
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id: pek1delta
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id: Man1DHEH-man1DHEH-partial_amino_acid_deletion-expression-not_assayed_or_wild_type
data:
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id: did4delta
data:
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id: clr4delta
data:
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id: byr1delta
data:
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id: wee1-G788E-G788E-amino_acid_mutation-expression-not_assayed_or_wild_type
data:
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id: rga4delta__rga6delta
data:
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id: SJAG_00124delta__sty1delta
data:
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id: mid1delta__pom1delta
data:
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id: man1-1-488-man1-1-488-amino_acid_insertion_and_deletion-expression-not_assayed_or_wild_type
data:
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id: ned1S235A_S651-S235A__S651-amino_acid_mutation-expression-not_assayed_or_wild_type
data:
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id: wis1delta
data:
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id: ned1S235E_S651E-S235E__S651E-amino_acid_mutation-expression-not_assayed_or_wild_type
data:
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id: atf1delta
data:
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id: mad2delta
data:
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id: cds1delta
data:
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id: tel1delta
data:
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id: byr2delta
data:
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id: wee1delta
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id: mpe1-R77W-R77W-amino_acid_mutation-expression-not_assayed_or_wild_type
data:
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id: pmk1delta
data:
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id: pck1delta__pmk1delta
data:
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id: cdc2-1w-G146D-amino_acid_mutation-expression-not_assayed_or_wild_type
data:
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id: rad9delta
data:
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id: cmp7delta__vps4-ts-I307T_L327S-amino_acid_mutation-expression-not_assayed_or_wild_type
data:
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id: acb1delta
data:
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id:
  cut3-T19E-cut3-T19E-amino_acid_mutation-expression-not_assayed_or_wild_type__pim1-R152C-R152C-amino_acid_mutation-expression-not_assayed_or_wild_type

data:
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id: gms1delta
data:
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id: gap1delta
data:
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id:
  Pmk1Sp(delta82-105)-Pmk1_from_S._pombe_with_deleted_residues_82-105-partial_amino_acid_deletion-expression-not_assayed_or_wild_type

data:
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id: cox6delta
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id: Pmk1Sp-Pmk1_from_S._pombe-other-expression-not_assayed_or_wild_type
data:
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id: scd2delta
data:
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id: gef1delta
data:
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id: man1delta
data:
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id: sep1delta
data:
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id: rip1delta
data:
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id: nem2delta
data:
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id: ade6-domK-Q262A-amino_acid_mutation-expression-not_assayed_or_wild_type
data:
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id: ste6delta
data:
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id: efc25delta
data:
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id: arb1delta
data:
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id: pim1-R152C-R152C-amino_acid_mutation-expression-not_assayed_or_wild_type
data:
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id: ace2delta
data:
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id: crb2delta
data:
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id: ndi1delta
data:
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id: rad51delta
data:
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id: Vps4-EQ-E233Q-amino_acid_mutation-expression-not_assayed_or_wild_type
data:
  {"alleles_by_uniquename":{"SJAG_03892:allele-2":{"allele_type":"amino_acid_mutation","description":"E233Q","gene_uniquename":"SJAG_03892","name":"Vps4-EQ","uniquename":"SJAG_03892:allele-2"}},"annotation_count":1,"annotation_details":{},"comment":null,"cv_annotations":{"single_locus_phenotype":[{"annotations":[114438],"is_not":false,"summary":null,"term":"FYPO:0007771"}]},"display_name":"Vps4-EQ(E233Q aa)","display_uniquename":"Vps4-EQ-E233Q-amino_acid_mutation-expression-not_assayed_or_wild_type","genes_by_uniquename":{"SJAG_01745":null,"SJAG_03892":null},"genotypes_by_uniquename":{"Vps4-EQ-E233Q-amino_acid_mutation-expression-not_assayed_or_wild_type":{"display_name":"Vps4-EQ(E233Q aa)","display_uniquename":"Vps4-EQ-E233Q-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03892:allele-2","expression":"Not assayed or wild type"}]}]}},"loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03892:allele-2","expression":"Not assayed or wild type"}]}],"ploidiness":"haploid","references_by_uniquename":{"PMID:32109380":null},"taxonid":4897,"terms_by_termid":{"FYPO:0007771":null}}


id: gpd1delta
data:
  {"alleles_by_uniquename":{"SJAG_00409:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_00409","name":"gpd1delta","uniquename":"SJAG_00409:allele-1"}},"annotation_count":3,"annotation_details":{},"comment":null,"cv_annotations":{"single_locus_phenotype":[{"annotations":[114522],"is_not":false,"summary":null,"term":"FYPO:0000026"},{"annotations":[114521],"is_not":false,"summary":null,"term":"FYPO:0001355"},{"annotations":[114523],"is_not":false,"summary":null,"term":"FYPO:0001489"}]},"display_name":"gpd1delta","display_uniquename":"gpd1delta","genes_by_uniquename":{"SJAG_00409":null},"genotypes_by_uniquename":{"gpd1delta":{"display_name":"gpd1delta","display_uniquename":"gpd1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_00409:allele-1","expression":"Null"}]}]}},"loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_00409:allele-1","expression":"Null"}]}],"ploidiness":"haploid","references_by_uniquename":{"PMID:37164017":null},"taxonid":4897,"terms_by_termid":{"FYECO:0000005":null,"FYECO:0000126":null,"FYECO:0000137":null,"FYPO:0000026":null,"FYPO:0001355":null,"FYPO:0001489":null,"FYPO_EXT:0000001":null}}


id: ned1-5A-S499A__S538A__T620A__T638A__S651A-amino_acid_mutation-expression-not_assayed_or_wild_type
data:
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id: sdh3delta
data:
  {"alleles_by_uniquename":{"SJAG_03920:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_03920","name":"sdh3delta","uniquename":"SJAG_03920:allele-1"}},"annotation_count":1,"annotation_details":{},"comment":null,"cv_annotations":{"single_locus_phenotype":[{"annotations":[114527],"is_not":false,"summary":null,"term":"FYPO:0002058"}]},"display_name":"sdh3delta","display_uniquename":"sdh3delta","genes_by_uniquename":{"SJAG_03920":null},"genotypes_by_uniquename":{"sdh3delta":{"display_name":"sdh3delta","display_uniquename":"sdh3delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03920:allele-1","expression":"Null"}]}]}},"loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03920:allele-1","expression":"Null"}]}],"ploidiness":"haploid","references_by_uniquename":{"PMID:37164017":null},"taxonid":4897,"terms_by_termid":{"FYECO:0000005":null,"FYECO:0000126":null,"FYECO:0000137":null,"FYPO:0002058":null}}


id: oar2delta
data:
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id: win1delta
data:
  {"alleles_by_uniquename":{"SJAG_04777:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_04777","name":"win1delta","uniquename":"SJAG_04777:allele-1"}},"annotation_count":1,"annotation_details":{},"comment":null,"cv_annotations":{"single_locus_phenotype":[{"annotations":[114196],"is_not":false,"summary":null,"term":"FYPO:0000124"}]},"display_name":"win1delta","display_uniquename":"win1delta","genes_by_uniquename":{"SJAG_04777":null},"genotypes_by_uniquename":{"win1delta":{"display_name":"win1delta","display_uniquename":"win1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04777:allele-1","expression":"Null"}]}]}},"loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04777:allele-1","expression":"Null"}]}],"ploidiness":"haploid","references_by_uniquename":{"PMID:29566183":null},"taxonid":4897,"terms_by_termid":{"FYECO:0000137":null,"FYPO:0000124":null}}


id: SJAG_00124delta
data:
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id: chp1delta
data:
  {"alleles_by_uniquename":{"SJAG_03916:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_03916","name":"chp1delta","uniquename":"SJAG_03916:allele-1"}},"annotation_count":1,"annotation_details":{},"comment":null,"cv_annotations":{"single_locus_phenotype":[{"annotations":[114249],"is_not":false,"summary":null,"term":"FYPO:0002061"}]},"display_name":"chp1delta","display_uniquename":"chp1delta","genes_by_uniquename":{"SJAG_03916":null},"genotypes_by_uniquename":{"chp1delta":{"display_name":"chp1delta","display_uniquename":"chp1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03916:allele-1","expression":"Null"}]}]}},"loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03916:allele-1","expression":"Null"}]}],"ploidiness":"haploid","references_by_uniquename":{"PMID:35226668":null},"taxonid":4897,"terms_by_termid":{"FYECO:0000005":null,"FYECO:0000162":null,"FYPO:0002061":null}}


id: oar2-dm12-R72A,L75A,R106A,L109A-amino_acid_mutation-expression-overexpression
data:
  {"alleles_by_uniquename":{"SJAG_03198:allele-3":{"allele_type":"amino_acid_mutation","description":"R72A,L75A,R106A,L109A","gene_uniquename":"SJAG_03198","name":"oar2-dm12","synonyms":[{"name":"destruction box mutations","reference":"PMID:23786411","type":"exact"}],"uniquename":"SJAG_03198:allele-3"}},"annotation_count":1,"annotation_details":{},"comment":null,"cv_annotations":{"single_locus_phenotype":[{"annotations":[114114],"is_not":false,"summary":null,"term":"FYPO:0000080"}]},"display_name":"oar2-dm12(R72A,L75A,R106A,L109A aa)[Overexpression]","display_uniquename":"oar2-dm12-R72A,L75A,R106A,L109A-amino_acid_mutation-expression-overexpression","genes_by_uniquename":{"SJAG_03198":null},"genotypes_by_uniquename":{"oar2-dm12-R72A,L75A,R106A,L109A-amino_acid_mutation-expression-overexpression":{"display_name":"oar2-dm12(R72A,L75A,R106A,L109A aa)[Overexpression]","display_uniquename":"oar2-dm12-R72A,L75A,R106A,L109A-amino_acid_mutation-expression-overexpression","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03198:allele-3","expression":"Overexpression"}]}]}},"loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03198:allele-3","expression":"Overexpression"}]}],"ploidiness":"haploid","references_by_uniquename":{"PMID:23786411":null},"taxonid":4897,"terms_by_termid":{"FYECO:0000006":null,"FYECO:0000137":null,"FYPO:0000080":null,"FYPO_EXT:0000001":null}}


id: nde1delta
data:
  {"alleles_by_uniquename":{},"annotation_count":0,"annotation_details":{},"comment":null,"cv_annotations":{},"display_name":"nde1delta","display_uniquename":"nde1delta","genes_by_uniquename":{},"genotypes_by_uniquename":{},"loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01539:allele-1","expression":"Null"}]}],"ploidiness":"haploid","references_by_uniquename":{},"taxonid":4897,"terms_by_termid":{}}


id: rad26delta
data:
  {"alleles_by_uniquename":{"SJAG_00429:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_00429","name":"rad26delta","uniquename":"SJAG_00429:allele-1"}},"annotation_count":3,"annotation_details":{},"comment":null,"cv_annotations":{"single_locus_phenotype":[{"annotations":[114600],"is_not":false,"summary":null,"term":"FYPO:0007782"},{"annotations":[114620],"is_not":false,"summary":null,"term":"FYPO:0000085"},{"annotations":[114622],"is_not":false,"summary":null,"term":"FYPO:0001234"}]},"display_name":"rad26delta","display_uniquename":"rad26delta","genes_by_uniquename":{"SJAG_00429":null},"genotypes_by_uniquename":{"rad26delta":{"display_name":"rad26delta","display_uniquename":"rad26delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_00429:allele-1","expression":"Null"}]}]}},"loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_00429:allele-1","expression":"Null"}]}],"ploidiness":"haploid","references_by_uniquename":{"PMID:23090706":null},"taxonid":4897,"terms_by_termid":{"FYECO:0000005":null,"FYECO:0000137":null,"FYECO:0000314":null,"FYPO:0000085":null,"FYPO:0001234":null,"FYPO:0007782":null,"FYPO_EXT:0000001":null,"FYPO_EXT:0000002":null}}


id: rga4delta__wee1-G788E-G788E-amino_acid_mutation-expression-not_assayed_or_wild_type
data:
  {"alleles_by_uniquename":{"SJAG_04280:allele-2":{"allele_type":"amino_acid_mutation","description":"G788E","gene_uniquename":"SJAG_04280","name":"wee1-G788E","uniquename":"SJAG_04280:allele-2"},"SJAG_04522:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_04522","name":"rga4delta","uniquename":"SJAG_04522:allele-1"}},"annotation_count":1,"annotation_details":{},"comment":null,"cv_annotations":{"multi_locus_phenotype":[{"annotations":[114289],"is_not":false,"summary":null,"term":"FYPO:0004293"}]},"display_name":"rga4delta wee1-G788E(aa)","display_uniquename":"rga4delta__wee1-G788E-G788E-amino_acid_mutation-expression-not_assayed_or_wild_type","genes_by_uniquename":{"SJAG_04280":null,"SJAG_04522":null},"genotypes_by_uniquename":{"rga4delta__wee1-G788E-G788E-amino_acid_mutation-expression-not_assayed_or_wild_type":{"display_name":"rga4delta wee1-G788E(aa)","display_uniquename":"rga4delta__wee1-G788E-G788E-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04522:allele-1","expression":"Null"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_04280:allele-2","expression":"Not assayed or wild type"}]}]}},"loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04522:allele-1","expression":"Null"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_04280:allele-2","expression":"Not assayed or wild type"}]}],"ploidiness":"haploid","references_by_uniquename":{"PMID:30664646":null},"taxonid":4897,"terms_by_termid":{"FYECO:0000005":null,"FYECO:0000137":null,"FYPO:0004293":null,"FYPO_EXT:0000001":null}}


id: cdc15-A-L264P,P442T-amino_acid_mutation-expression-not_assayed_or_wild_type
data:
  {"alleles_by_uniquename":{"SJAG_03596:allele-1":{"allele_type":"amino_acid_mutation","description":"L264P,P442T","gene_uniquename":"SJAG_03596","name":"cdc15-A","uniquename":"SJAG_03596:allele-1"}},"annotation_count":1,"annotation_details":{},"comment":null,"cv_annotations":{"single_locus_phenotype":[{"annotations":[114562],"is_not":false,"summary":null,"term":"FYPO:0000231"}]},"display_name":"cdc15-A(L264P,P442T aa)","display_uniquename":"cdc15-A-L264P,P442T-amino_acid_mutation-expression-not_assayed_or_wild_type","genes_by_uniquename":{"SJAG_03596":null},"genotypes_by_uniquename":{"cdc15-A-L264P,P442T-amino_acid_mutation-expression-not_assayed_or_wild_type":{"display_name":"cdc15-A(L264P,P442T aa)","display_uniquename":"cdc15-A-L264P,P442T-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03596:allele-1","expression":"Not assayed or wild type"}]}]}},"loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03596:allele-1","expression":"Not assayed or wild type"}]}],"ploidiness":"haploid","references_by_uniquename":{"PMID:25866389":null},"taxonid":4897,"terms_by_termid":{"FYECO:0000004":null,"FYECO:0000137":null,"FYPO:0000231":null,"FYPO_EXT:0000001":null}}


id: vps28delta
data:
  {"alleles_by_uniquename":{"SJAG_04349:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_04349","name":"vps28delta","uniquename":"SJAG_04349:allele-1"}},"annotation_count":1,"annotation_details":{},"comment":null,"cv_annotations":{"single_locus_phenotype":[{"annotations":[114450],"is_not":false,"summary":null,"term":"FYPO:0001440"}]},"display_name":"vps28delta","display_uniquename":"vps28delta","genes_by_uniquename":{"SJAG_04349":null},"genotypes_by_uniquename":{"vps28delta":{"display_name":"vps28delta","display_uniquename":"vps28delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04349:allele-1","expression":"Null"}]}]}},"loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04349:allele-1","expression":"Null"}]}],"ploidiness":"haploid","references_by_uniquename":{"PMID:32109380":null},"taxonid":4897,"terms_by_termid":{"FYPO:0001440":null,"FYPO_EXT:0000001":null,"GO:0000815":null}}


id: mid1delta__mid2delta
data:
  {"alleles_by_uniquename":{"SJAG_00118:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_00118","name":"mid2delta","uniquename":"SJAG_00118:allele-1"},"SJAG_01143:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_01143","name":"mid1delta","uniquename":"SJAG_01143:allele-1"}},"annotation_count":1,"annotation_details":{},"comment":null,"cv_annotations":{"multi_locus_phenotype":[{"annotations":[114570],"is_not":false,"summary":null,"term":"FYPO:0000118"}]},"display_name":"mid1delta mid2delta","display_uniquename":"mid1delta__mid2delta","genes_by_uniquename":{"SJAG_00118":null,"SJAG_01143":null},"genotypes_by_uniquename":{"mid1delta__mid2delta":{"display_name":"mid1delta mid2delta","display_uniquename":"mid1delta__mid2delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01143:allele-1","expression":"Null"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_00118:allele-1","expression":"Null"}]}]}},"loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01143:allele-1","expression":"Null"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_00118:allele-1","expression":"Null"}]}],"ploidiness":"haploid","references_by_uniquename":{"PMID:25866389":null},"taxonid":4897,"terms_by_termid":{"FYECO:0000005":null,"FYECO:0000137":null,"FYPO:0000118":null}}


id: nur1delta
data:
  {"alleles_by_uniquename":{"SJAG_01050:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_01050","name":"nur1delta","uniquename":"SJAG_01050:allele-1"}},"annotation_count":1,"annotation_details":{},"comment":null,"cv_annotations":{"single_locus_phenotype":[{"annotations":[114432],"is_not":false,"summary":null,"term":"FYPO:0007073"}]},"display_name":"nur1delta","display_uniquename":"nur1delta","genes_by_uniquename":{"SJAG_01050":null,"SJAG_01745":null},"genotypes_by_uniquename":{"nur1delta":{"display_name":"nur1delta","display_uniquename":"nur1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01050:allele-1","expression":"Null"}]}]}},"loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01050:allele-1","expression":"Null"}]}],"ploidiness":"haploid","references_by_uniquename":{"PMID:32109380":null},"taxonid":4897,"terms_by_termid":{"FYECO:0000137":null,"FYPO:0007073":null,"FYPO_EXT:0000001":null,"FYPO_EXT:0000002":null}}


id: ned1cat-D422E,D424E-amino_acid_mutation-expression-not_assayed_or_wild_type
data:
  {"alleles_by_uniquename":{"SJAG_02763:allele-2":{"allele_type":"amino_acid_mutation","description":"D422E,D424E","gene_uniquename":"SJAG_02763","name":"ned1cat","synonyms":[{"name":"Catalytic mutant","reference":"PMID:26774782","type":"exact"}],"uniquename":"SJAG_02763:allele-2"}},"annotation_count":1,"annotation_details":{},"comment":null,"cv_annotations":{"single_locus_phenotype":[{"annotations":[114230],"is_not":false,"summary":null,"term":"FYPO:0001556"}]},"display_name":"ned1cat(D422E,D424E aa)","display_uniquename":"ned1cat-D422E,D424E-amino_acid_mutation-expression-not_assayed_or_wild_type","genes_by_uniquename":{"SJAG_02763":null},"genotypes_by_uniquename":{"ned1cat-D422E,D424E-amino_acid_mutation-expression-not_assayed_or_wild_type":{"display_name":"ned1cat(D422E,D424E aa)","display_uniquename":"ned1cat-D422E,D424E-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_02763:allele-2","expression":"Not assayed or wild type"}]}]}},"loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_02763:allele-2","expression":"Not assayed or wild type"}]}],"ploidiness":"haploid","references_by_uniquename":{"PMID:26774782":null},"taxonid":4897,"terms_by_termid":{"FYPO:0001556":null,"FYPO_EXT:0000001":null}}


id: rga6delta
data:
  {"alleles_by_uniquename":{"SJAG_00028:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_00028","name":"rga6delta","uniquename":"SJAG_00028:allele-1"}},"annotation_count":1,"annotation_details":{},"comment":null,"cv_annotations":{"single_locus_phenotype":[{"annotations":[114283],"is_not":false,"summary":null,"term":"FYPO:0006616"}]},"display_name":"rga6delta","display_uniquename":"rga6delta","genes_by_uniquename":{"SJAG_00028":null},"genotypes_by_uniquename":{"rga6delta":{"display_name":"rga6delta","display_uniquename":"rga6delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_00028:allele-1","expression":"Null"}]}]}},"loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_00028:allele-1","expression":"Null"}]}],"ploidiness":"haploid","references_by_uniquename":{"PMID:30664646":null},"taxonid":4897,"terms_by_termid":{"FYECO:0000005":null,"FYECO:0000137":null,"FYPO:0006616":null,"FYPO_EXT:0000002":null}}


id: rad24delta
data:
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id: rad3delta
data:
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id: cut23-415-A186T_ts-amino_acid_mutation-expression-not_assayed_or_wild_type
data:
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id: agn1delta
data:
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id: mkh1delta
data:
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id: pck1delta
data:
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id: chk1delta
data:
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id: ago1delta__leo1delta
data:
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id: chk1-P470L-P470L-amino_acid_mutation-expression-not_assayed_or_wild_type
data:
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id: ura4delta
data:
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id: vps24delta
data:
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id: apc2-361-E548K_ts-amino_acid_mutation-expression-not_assayed_or_wild_type
data:
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id: wis4delta
data:
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id: rim20E308V-E308V-amino_acid_mutation-expression-not_assayed_or_wild_type
data:
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id: apc2-361-E548K_ts-amino_acid_mutation-expression-not_assayed_or_wild_type__oar2delta
data:
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id: rga6delta__wee1-as8-T582G-amino_acid_mutation-expression-not_assayed_or_wild_type
data:
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id: vps25delta
data:
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id: cdc15-A-L264P,P442T-amino_acid_mutation-expression-not_assayed_or_wild_type__mid1delta
data:
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id: mdh1delta
data:
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id: dcr1delta__leo1delta
data:
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id: nup61delta
data:
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id: stc1delta
data:
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id: dcr1delta__frameshift-aa61->stop-nonsense_mutation-expression-not_assayed_or_wild_type
data:
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id: wee1-as8-T582G-amino_acid_mutation-expression-not_assayed_or_wild_type
data:
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id: pyk1-A343T-A343T-amino_acid_mutation-expression-not_assayed_or_wild_type
data:
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id: nuc2-1051-E405K_ts-amino_acid_mutation-expression-not_assayed_or_wild_type
data:
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id: fum1delta
data:
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id: chk1delta__crb2delta
data:
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id: ago1delta
data:
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id: cdc25-D9-I30T,T572P-amino_acid_mutation-expression-not_assayed_or_wild_type
data:
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id: rad1delta
data:
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id: wcs2delta
data:
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id: pka1delta
data:
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id: mid1-delta(711-723_a.a.)-711-723-partial_amino_acid_deletion-expression-not_assayed_or_wild_type
data:
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id: for3delta
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id: sst4delta
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id: rad25delta
data:
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id: cem1delta
data:
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id: tip1delta
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id: sty1delta
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id: dcr1delta
data:
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id: ned1-5E-S499E__S538E__T620E__T638E__S651E-amino_acid_mutation-expression-not_assayed_or_wild_type
data:
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id: mid1delta
data:
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id: nur1delta__vps4delta
data:
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id: cut3-T19E-cut3-T19E-amino_acid_mutation-expression-not_assayed_or_wild_type
data:
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id: pom1delta
data:
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id:
  apc2-361-E548K_ts-amino_acid_mutation-expression-not_assayed_or_wild_type__oar2-dm12-R72A,L75A,R106A,L109A-amino_acid_mutation-expression-overexpression

data:
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id: nup132delta
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id: ste11delta
data:
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id: vps4delta
data:
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id: pom152delta
data:
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id: rga4delta
data:
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id: ptp4delta
data:
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id: lem2delta
data:
  {"alleles_by_uniquename":{"SJAG_01745:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_01745","name":"lem2delta","uniquename":"SJAG_01745:allele-1"}},"annotation_count":5,"annotation_details":{},"comment":null,"cv_annotations":{"single_locus_phenotype":[{"annotations":[114489],"is_not":false,"summary":null,"term":"FYPO:0003779"},{"annotations":[114541],"is_not":false,"summary":null,"term":"FYPO:0001375"},{"annotations":[114426,114490],"is_not":false,"summary":null,"term":"FYPO:0007772"},{"annotations":[114431],"is_not":false,"summary":null,"term":"FYPO:0003657"}]},"display_name":"lem2delta","display_uniquename":"lem2delta","genes_by_uniquename":{"SJAG_01050":null,"SJAG_01745":null,"SJAG_05207":null},"genotypes_by_uniquename":{"lem2delta":{"display_name":"lem2delta","display_uniquename":"lem2delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01745:allele-1","expression":"Null"}]}]}},"loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01745:allele-1","expression":"Null"}]}],"ploidiness":"haploid","references_by_uniquename":{"PMID:21802294":null,"PMID:32109380":null,"PMID:32243490":null},"taxonid":4897,"terms_by_termid":{"FYECO:0000137":null,"FYECO:0000162":null,"FYPO:0001375":null,"FYPO:0003657":null,"FYPO:0003779":null,"FYPO:0007772":null,"FYPO_EXT:0000001":null,"FYPO_EXT:0000002":null}}


id: dcr1delta__mpe1-R77W-R77W-amino_acid_mutation-expression-not_assayed_or_wild_type
data:
  {"alleles_by_uniquename":{"SJAG_02668:allele-1":{"allele_type":"amino_acid_mutation","description":"R77W","gene_uniquename":"SJAG_02668","name":"mpe1-R77W","uniquename":"SJAG_02668:allele-1"},"SJAG_03689:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_03689","name":"dcr1delta","uniquename":"SJAG_03689:allele-1"}},"annotation_count":1,"annotation_details":{},"comment":null,"cv_annotations":{"multi_locus_phenotype":[{"annotations":[114259],"is_not":false,"summary":null,"term":"FYPO:0002058"}]},"display_name":"dcr1delta mpe1-R77W(aa)","display_uniquename":"dcr1delta__mpe1-R77W-R77W-amino_acid_mutation-expression-not_assayed_or_wild_type","genes_by_uniquename":{"SJAG_02668":null,"SJAG_03689":null},"genotypes_by_uniquename":{"dcr1delta__mpe1-R77W-R77W-amino_acid_mutation-expression-not_assayed_or_wild_type":{"display_name":"dcr1delta mpe1-R77W(aa)","display_uniquename":"dcr1delta__mpe1-R77W-R77W-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03689:allele-1","expression":"Null"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_02668:allele-1","expression":"Not assayed or wild type"}]}]}},"loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03689:allele-1","expression":"Null"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_02668:allele-1","expression":"Not assayed or wild type"}]}],"ploidiness":"haploid","references_by_uniquename":{"PMID:35226668":null},"taxonid":4897,"terms_by_termid":{"FYECO:0000005":null,"FYECO:0000162":null,"FYPO:0002058":null}}


id: pck2delta
data:
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id: vps32delta
data:
  {"alleles_by_uniquename":{"SJAG_01242:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_01242","name":"vps32delta","uniquename":"SJAG_01242:allele-1"}},"annotation_count":4,"annotation_details":{},"comment":null,"cv_annotations":{"single_locus_phenotype":[{"annotations":[114433,114543],"is_not":false,"summary":null,"term":"FYPO:0007772"},{"annotations":[114466,114545],"is_not":false,"summary":null,"term":"FYPO:0001234"}]},"display_name":"vps32delta","display_uniquename":"vps32delta","genes_by_uniquename":{"SJAG_01242":null},"genotypes_by_uniquename":{"vps32delta":{"display_name":"vps32delta","display_uniquename":"vps32delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01242:allele-1","expression":"Null"}]}]}},"loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01242:allele-1","expression":"Null"}]}],"ploidiness":"haploid","references_by_uniquename":{"PMID:32109380":null,"PMID:32243490":null},"taxonid":4897,"terms_by_termid":{"FYPO:0001234":null,"FYPO:0007772":null,"FYPO_EXT:0000001":null}}


id: oar2-51-Y189D_cold_sensitive-amino_acid_mutation-expression-overexpression
data:
  {"alleles_by_uniquename":{"SJAG_03198:allele-2":{"allele_type":"amino_acid_mutation","description":"Y189D cold sensitive","gene_uniquename":"SJAG_03198","name":"oar2-51","uniquename":"SJAG_03198:allele-2"}},"annotation_count":1,"annotation_details":{},"comment":null,"cv_annotations":{"single_locus_phenotype":[{"annotations":[114100],"is_not":false,"summary":null,"term":"FYPO:0000080"}]},"display_name":"oar2-51(Y189D cold sensitive)[Overexpression]","display_uniquename":"oar2-51-Y189D_cold_sensitive-amino_acid_mutation-expression-overexpression","genes_by_uniquename":{"SJAG_03198":null},"genotypes_by_uniquename":{"oar2-51-Y189D_cold_sensitive-amino_acid_mutation-expression-overexpression":{"display_name":"oar2-51(Y189D cold sensitive)[Overexpression]","display_uniquename":"oar2-51-Y189D_cold_sensitive-amino_acid_mutation-expression-overexpression","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03198:allele-2","expression":"Overexpression"}]}]}},"loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03198:allele-2","expression":"Overexpression"}]}],"ploidiness":"haploid","references_by_uniquename":{"PMID:23786411":null},"taxonid":4897,"terms_by_termid":{"FYECO:0000006":null,"FYECO:0000137":null,"FYPO:0000080":null,"FYPO_EXT:0000001":null}}


id: pyp1delta
data:
  {"alleles_by_uniquename":{"SJAG_02013:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_02013","name":"pyp1delta","uniquename":"SJAG_02013:allele-1"}},"annotation_count":4,"annotation_details":{},"comment":null,"cv_annotations":{"single_locus_phenotype":[{"annotations":[114366],"is_not":false,"summary":null,"term":"FYPO:0007778"},{"annotations":[114365],"is_not":false,"summary":null,"term":"FYPO:0007776"},{"annotations":[114367],"is_not":false,"summary":null,"term":"FYPO:0007780"},{"annotations":[114357],"is_not":false,"summary":null,"term":"FYPO:0000648"}]},"display_name":"pyp1delta","display_uniquename":"pyp1delta","genes_by_uniquename":{"SJAG_02013":null},"genotypes_by_uniquename":{"pyp1delta":{"display_name":"pyp1delta","display_uniquename":"pyp1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_02013:allele-1","expression":"Null"}]}]}},"loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_02013:allele-1","expression":"Null"}]}],"ploidiness":"haploid","references_by_uniquename":{"PMID:31150379":null},"taxonid":4897,"terms_by_termid":{"FYECO:0000137":null,"FYECO:0000314":null,"FYPO:0000648":null,"FYPO:0007776":null,"FYPO:0007778":null,"FYPO:0007780":null,"FYPO_EXT:0000001":null}}


id:
  apc2-361-E548K_ts-amino_acid_mutation-expression-not_assayed_or_wild_type__oar2-51-Y189D_cold_sensitive-amino_acid_mutation-expression-not_assayed_or_wild_type

data:
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id: alx1delta
data:
  {"alleles_by_uniquename":{"SJAG_03891:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_03891","name":"alx1delta","uniquename":"SJAG_03891:allele-1"}},"annotation_count":1,"annotation_details":{},"comment":null,"cv_annotations":{"single_locus_phenotype":[{"annotations":[114550],"is_not":false,"summary":null,"term":"FYPO:0007772"}]},"display_name":"alx1delta","display_uniquename":"alx1delta","genes_by_uniquename":{"SJAG_03891":null},"genotypes_by_uniquename":{"alx1delta":{"display_name":"alx1delta","display_uniquename":"alx1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03891:allele-1","expression":"Null"}]}]}},"loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03891:allele-1","expression":"Null"}]}],"ploidiness":"haploid","references_by_uniquename":{"PMID:32243490":null},"taxonid":4897,"terms_by_termid":{"FYPO:0007772":null,"FYPO_EXT:0000003":null}}


id: vps4-ts-I307T_L327S-amino_acid_mutation-expression-not_assayed_or_wild_type
data:
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id:
  lig4::KanMX6-RNA_sequencing_revealed_that_only_the_5'_end_of_the_disrupted_allele_showed_low_RNA_expression_and_coverage-disruption-expression-knockdown

data:
  {"alleles_by_uniquename":{"SJAG_02527:allele-1":{"allele_type":"disruption","description":"RNA sequencing revealed that only the 5' end of the disrupted allele showed low RNA expression and coverage","gene_uniquename":"SJAG_02527","name":"lig4::KanMX6","uniquename":"SJAG_02527:allele-1"}},"annotation_count":7,"annotation_details":{},"comment":null,"cv_annotations":{"single_locus_phenotype":[{"annotations":[114499],"is_not":false,"summary":null,"term":"FYPO:0007776"},{"annotations":[114501],"is_not":false,"summary":null,"term":"FYPO:0009111"},{"annotations":[114498],"is_not":false,"summary":null,"term":"FYPO:0000588"},{"annotations":[114504],"is_not":false,"summary":null,"term":"FYPO:0005705"},{"annotations":[114502],"is_not":false,"summary":null,"term":"FYPO:0005231"},{"annotations":[114500],"is_not":false,"summary":null,"term":"FYPO:0000097"},{"annotations":[114503],"is_not":false,"summary":null,"term":"FYPO:0001408"}]},"display_name":"lig4::KanMX6(RNA sequencing revealed that only the 5' end of the disrupted allele showed low RNA expression and coverage)[Knockdown]","display_uniquename":"lig4::KanMX6-RNA_sequencing_revealed_that_only_the_5'_end_of_the_disrupted_allele_showed_low_RNA_expression_and_coverage-disruption-expression-knockdown","genes_by_uniquename":{"SJAG_02527":null},"genotypes_by_uniquename":{"lig4::KanMX6-RNA_sequencing_revealed_that_only_the_5'_end_of_the_disrupted_allele_showed_low_RNA_expression_and_coverage-disruption-expression-knockdown":{"display_name":"lig4::KanMX6(RNA sequencing revealed that only the 5' end of the disrupted allele showed low RNA expression and coverage)[Knockdown]","display_uniquename":"lig4::KanMX6-RNA_sequencing_revealed_that_only_the_5'_end_of_the_disrupted_allele_showed_low_RNA_expression_and_coverage-disruption-expression-knockdown","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_02527:allele-1","expression":"Knockdown"}]}]}},"loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_02527:allele-1","expression":"Knockdown"}]}],"ploidiness":"haploid","references_by_uniquename":{"PMID:37233261":null},"taxonid":4897,"terms_by_termid":{"FYECO:0000005":null,"FYECO:0000081":null,"FYECO:0000117":null,"FYECO:0000126":null,"FYECO:0000137":null,"FYECO:0000315":null,"FYPO:0000097":null,"FYPO:0000588":null,"FYPO:0001408":null,"FYPO:0005231":null,"FYPO:0005705":null,"FYPO:0007776":null,"FYPO:0009111":null}}


id: ras1delta
data:
  {"alleles_by_uniquename":{"SJAG_03453:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_03453","name":"ras1delta","uniquename":"SJAG_03453:allele-1"}},"annotation_count":4,"annotation_details":{},"comment":null,"cv_annotations":{"single_locus_phenotype":[{"annotations":[114186],"is_not":false,"summary":null,"term":"FYPO:0007789"},{"annotations":[114183],"is_not":false,"summary":null,"term":"FYPO:0001355"},{"annotations":[114185],"is_not":false,"summary":null,"term":"FYPO:0000280"},{"annotations":[114184],"is_not":false,"summary":null,"term":"FYPO:0002380"}]},"display_name":"ras1delta","display_uniquename":"ras1delta","genes_by_uniquename":{"SJAG_03453":null},"genotypes_by_uniquename":{"ras1delta":{"display_name":"ras1delta","display_uniquename":"ras1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03453:allele-1","expression":"Null"}]}]}},"loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03453:allele-1","expression":"Null"}]}],"ploidiness":"haploid","references_by_uniquename":{"PMID:29566183":null},"taxonid":4897,"terms_by_termid":{"FYECO:0000137":null,"FYPO:0000280":null,"FYPO:0001355":null,"FYPO:0002380":null,"FYPO:0007789":null}}


id: ade6-domE-S427>stop-nonsense_mutation-expression-not_assayed_or_wild_type
data:
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id:
  Pmk1Sj(ins82-105)-82-NITCIYDLDIIINPYNFNEVYIYEE-105-amino_acid_insertion-expression-not_assayed_or_wild_type

data:
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id: cmp7delta
data:
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id: etr1delta
data:
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id: rdp1delta
data:
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id: bbl1-P363S-P363S-amino_acid_mutation-expression-not_assayed_or_wild_type
data:
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id: wcs1delta
data:
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id: mat-Pc-R47K-R47K-amino_acid_mutation-expression-not_assayed_or_wild_type
data:
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id: mrc1delta
data:
  {"alleles_by_uniquename":{"SJAG_04671:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_04671","name":"mrc1delta","uniquename":"SJAG_04671:allele-1"}},"annotation_count":3,"annotation_details":{},"comment":null,"cv_annotations":{"single_locus_phenotype":[{"annotations":[114598],"is_not":false,"summary":null,"term":"FYPO:0007790"},{"annotations":[114618],"is_not":false,"summary":null,"term":"FYPO:0000085"},{"annotations":[114615],"is_not":false,"summary":null,"term":"FYPO:0000088"}]},"display_name":"mrc1delta","display_uniquename":"mrc1delta","genes_by_uniquename":{"SJAG_04671":null},"genotypes_by_uniquename":{"mrc1delta":{"display_name":"mrc1delta","display_uniquename":"mrc1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04671:allele-1","expression":"Null"}]}]}},"loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04671:allele-1","expression":"Null"}]}],"ploidiness":"haploid","references_by_uniquename":{"PMID:23090706":null},"taxonid":4897,"terms_by_termid":{"FYECO:0000005":null,"FYECO:0000137":null,"FYPO:0000085":null,"FYPO:0000088":null,"FYPO:0007790":null,"FYPO_EXT:0000001":null,"FYPO_EXT:0000002":null}}


