# terms

id: PBO:0055350
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2779","termid":"PBO:0055350"}


id: PBO:0073912
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"solute carrier family 16 member 3","termid":"PBO:0073912"}


id: PATO:0002444
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A composition quality inhering in a bearer by virtue of the bearer's being composed of or possessing inorganic material.","definition_xrefs":["PATOC:WC"],"direct_ancestors":[{"relation_name":"is_a","term_name":"composition","termid":"PATO:0000025"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mineralized","termid":"PATO:0002444"}


id: FYPO:0002444
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype in which a protein that is normally localized to discrete regions in the cytoplasm, visible as foci or dots by microscopy, is abnormally localized such that dots cannot be observed.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mislocalized protein during vegetative growth","termid":"FYPO:0000782"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0000138"},{"rel_name":"output_of","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000002","FYPO:0001320","FYPO:0005447","FYPO:0000138"],"is_obsolete":false,"name":"loss of punctate cytoplasmic protein localization","synonyms":[{"name":"abolished punctate cytoplasmic protein localization","type":"exact"},{"name":"cytoplasmic dots absent","type":"related"},{"name":"loss of punctate cytoplasmic protein localisation","type":"exact"},{"name":"loss of punctate cytoplasmic protein localization during mitotic cell cycle","type":"related"},{"name":"loss of punctate cytoplasmic protein localization during vegetative growth","type":"exact"}],"termid":"FYPO:0002444"}


id: PBO:0055725
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"lamin tail domain containing 2","termid":"PBO:0055725"}


id: PBO:0038725
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"actin gamma 1 pseudogene 20","termid":"PBO:0038725"}


id: FYECO:0000183
data:
  {"annotation_feature_type":"gene","cv_name":"fission_yeast_phenotype_condition","definition":"An experimental condition in which alpha-tocopherol was added to the medium or assay buffer in excess compared to standard medium or assay buffers.","definition_xrefs":["PomBase:al"],"direct_ancestors":[{"relation_name":"is_a","term_name":"grouping excess","termid":"FYECO:0000109"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"+ alpha-tocopherol","synonyms":[{"name":"vitamin E added","type":"related"}],"termid":"FYECO:0000183"}


id: GO:1900889
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of pentadecane biosynthetic process.","definition_xrefs":["GOC:TermGenie","GOC:mengo_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of pentadecane biosynthetic process","termid":"GO:1900887"},{"relation_name":"is_a","term_name":"positive regulation of pentadecane metabolic process","termid":"GO:1900892"},{"relation_name":"is_a","term_name":"positive regulation of alkane biosynthetic process","termid":"GO:1901579"},{"relation_name":"positively_regulates","term_name":"pentadecane biosynthetic process","termid":"GO:1900634"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of pentadecane biosynthetic process","synonyms":[{"name":"activation of pentadecane anabolism","type":"narrow"},{"name":"activation of pentadecane biosynthesis","type":"narrow"},{"name":"activation of pentadecane biosynthetic process","type":"narrow"},{"name":"activation of pentadecane formation","type":"narrow"},{"name":"activation of pentadecane synthesis","type":"narrow"},{"name":"positive regulation of pentadecane anabolism","type":"related"},{"name":"positive regulation of pentadecane biosynthesis","type":"related"},{"name":"positive regulation of pentadecane formation","type":"related"},{"name":"positive regulation of pentadecane synthesis","type":"related"},{"name":"up regulation of pentadecane anabolism","type":"related"},{"name":"up regulation of pentadecane biosynthesis","type":"related"},{"name":"up regulation of pentadecane biosynthetic process","type":"exact"},{"name":"up regulation of pentadecane formation","type":"related"},{"name":"up regulation of pentadecane synthesis","type":"related"},{"name":"up-regulation of pentadecane anabolism","type":"related"},{"name":"up-regulation of pentadecane biosynthesis","type":"related"},{"name":"up-regulation of pentadecane biosynthetic process","type":"exact"},{"name":"up-regulation of pentadecane formation","type":"related"},{"name":"up-regulation of pentadecane synthesis","type":"related"},{"name":"upregulation of pentadecane anabolism","type":"related"},{"name":"upregulation of pentadecane biosynthesis","type":"related"},{"name":"upregulation of pentadecane biosynthetic process","type":"exact"},{"name":"upregulation of pentadecane formation","type":"related"},{"name":"upregulation of pentadecane synthesis","type":"related"}],"termid":"GO:1900889"}


id: PBO:0034366
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-in_in-paralogy_relationship_with","termid":"PBO:0034366"}


id: GO:0018974
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving 2,4,6-trinitrotoluene, 1-methyl-2,4,6-trinitrobenzene, a highly explosive pale yellow crystalline solid. It is prepared from toluene treated with concentrated sulfuric and nitric acids and is used in shells, bombs, and blasting explosives.","definition_xrefs":["ISBN:0333781767"],"direct_ancestors":[{"relation_name":"is_a","term_name":"trinitrotoluene metabolic process","termid":"GO:0018973"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"2,4,6-trinitrotoluene metabolic process","synonyms":[{"name":"2,4,6-trinitrotoluene metabolism","type":"exact"},{"name":"TNT metabolic process","type":"exact"},{"name":"TNT metabolism","type":"exact"}],"termid":"GO:0018974"}


id: GO:0090348
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the rate, frequency or extent of the chemical reactions and pathways involving organofluorine compounds, as carried out by individual cells.","definition_xrefs":["GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of cellular organohalogen metabolic process","termid":"GO:0090347"},{"relation_name":"regulates","term_name":"cellular organofluorine metabolic process","termid":"GO:0090346"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of cellular organofluorine metabolic process","termid":"GO:0090348"}


id: GO:0050067
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: L-lysine + O2 = 5-aminopentanamide + CO2 + H2O.","definition_xrefs":["RHEA:14601","EC:1.13.12.2"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of one atom of oxygen (internal monooxygenases or internal mixed function oxidases)","termid":"GO:0016703"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016491","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"lysine 2-monooxygenase activity","secondary_identifiers":["KEGG_REACTION:R00449","MetaCyc:LYSINE-2-MONOOXYGENASE-RXN"],"synonyms":[{"name":"L-lysine-2-monooxygenase activity","type":"related"},{"name":"L-lysine:oxygen 2-oxidoreductase (decarboxylating)","type":"related"},{"name":"lysine monooxygenase activity","type":"related"},{"name":"lysine oxygenase activity","type":"related"}],"termid":"GO:0050067"}


id: PBO:0075702
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SREK1IP1 pseudogene 2","termid":"PBO:0075702"}


id: PR:Q9USR5
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A THO complex subunit 5 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PANTHER:PTHR13375:SF3","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized THOC5 family protein (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC577.04","secondary_identifiers":["UniProtKB:Q9USR5"],"synonyms":[{"name":"Spom972h-THOC5","type":"exact"}],"termid":"PR:Q9USR5"}


id: PBO:0055909
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"leucine rich repeat containing 34","termid":"PBO:0055909"}


id: SO:0005836
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A region of sequence that is involved in the control of a biological process.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"gene_member_region","termid":"SO:0000831"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"regulatory_region","secondary_identifiers":["http://en.wikipedia.org/wiki/Regulatory_region"],"synonyms":[{"name":"INSDC_feature:regulatory","type":"broad"},{"name":"INSDC_qualifier:other","type":"exact"},{"name":"regulatory region","type":"exact"}],"termid":"SO:0005836"}


id: GO:0052586
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of an oxidation-reduction (redox) reaction in which a nitrogenous group, excluding NH and NH2 groups, acts as a hydrogen or electron donor and reduces a quinone or similar compound.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on other nitrogenous compounds as donors","termid":"GO:0016661"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003824","GO:0016491","GO:0003674"],"is_obsolete":false,"name":"oxidoreductase activity, acting on other nitrogenous compounds as donors, with a quinone or similar compound as acceptor","secondary_identifiers":["EC:1.7.5.-"],"termid":"GO:0052586"}


id: PBO:0000381
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"phospho-2-dehydro-3-deoxyheptonate aldolase (predicted)","termid":"PBO:0000381"}


id: PBO:0077789
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DNA topoisomerase III beta pseudogene 1","termid":"PBO:0077789"}


id: PBO:0088804
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cell wall and ascospore endo-1,3-beta-glucanase Eng2","termid":"PBO:0088804"}


id: PBO:0050069
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"histocompatibility minor 13","termid":"PBO:0050069"}


id: GO:0045758
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that activates or increases the frequency, rate or extent of actin polymerization and/or depolymerization.","definition_xrefs":["GOC:go_curators"],"gene_count":0,"genotype_count":0,"name":"obsolete positive regulation of actin polymerization and/or depolymerization (obsolete GO:0045758)","synonyms":[{"name":"positive regulation of actin polymerization and/or depolymerization","type":"exact"}],"termid":"GO:0045758"}


id: PBO:0050655
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"heat shock protein 90 alpha family class B member 5, pseudogene","termid":"PBO:0050655"}


id: PBO:0062968
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"poly(A) binding protein cytoplasmic 1 pseudogene 11","termid":"PBO:0062968"}


id: GO:0071931
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that activates or increases transcription as part of the G1/S transition of the mitotic cell cycle.","definition_xrefs":["GOC:mah","GOC:vw"],"gene_count":0,"genotype_count":0,"name":"obsolete positive regulation of transcription involved in G1/S transition of mitotic cell cycle (obsolete GO:0071931)","synonyms":[{"name":"positive regulation of transcription from RNA polymerase II promoter during G1/S phase of mitotic cell cycle","type":"related"},{"name":"positive regulation of transcription from RNA polymerase II promoter involved in G1/S transition of mitotic cell cycle","type":"exact"}],"termid":"GO:0071931"}


id: GO:0060614
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that decreases the rate or extent of mammary gland development in the male by an androgen binding to its receptor, causing a change in state or activity of a cell.","definition_xrefs":["GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"androgen receptor signaling pathway","termid":"GO:0030521"},{"relation_name":"is_a","term_name":"negative regulation of developmental process","termid":"GO:0051093"},{"relation_name":"is_a","term_name":"negative regulation of multicellular organismal process","termid":"GO:0051241"},{"relation_name":"is_a","term_name":"regulation of multicellular organismal development","termid":"GO:2000026"},{"relation_name":"negatively_regulates","term_name":"mammary gland development","termid":"GO:0030879"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"negative regulation of mammary gland development in males by androgen receptor signaling pathway","synonyms":[{"name":"negative regulation of mammary gland development in males by androgen receptor signalling pathway","type":"exact"}],"termid":"GO:0060614"}


id: GO:0034682
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"An integrin complex that comprises one alphav subunit and one beta1 subunit.","definition_xrefs":["PMID:12297042"],"direct_ancestors":[{"relation_name":"is_a","term_name":"integrin complex","termid":"GO:0008305"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005886"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0005575","GO:0032991","GO:0005886"],"is_obsolete":false,"name":"integrin alphav-beta1 complex","synonyms":[{"name":"ITGAV-ITGB1 complex","type":"narrow"},{"name":"alphav-beta1 integrin complex","type":"exact"}],"termid":"GO:0034682"}


id: PR:O14012
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPAC29A4.09 gene.","definition_xrefs":["PRO:DNx","UniProtKB:O14012"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal RNA-processing protein 17 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC29A4.09","synonyms":[{"name":"Spom972h-SPAC29A4.09","type":"exact"}],"termid":"PR:O14012"}


id: PATO:0025002
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A physical quality inhering in a bearer by virtue of the bearer being suitable for use as a safe means of hydration.","definition_xrefs":["Wikipedia:https://en.wikipedia.org/wiki/Drinking_water"],"direct_ancestors":[{"relation_name":"is_a","term_name":"potability","termid":"PATO:0025000"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"potable","synonyms":[{"name":"drinkable","type":"exact"}],"termid":"PATO:0025002"}


id: PBO:0081303
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ZNF84 divergent transcript","termid":"PBO:0081303"}


id: GO:0001090
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Binding to a basal RNA polymerase II transcription factor of the TFIIH class in order to modulate transcription. The transcription factor may or may not also interact selectively with DNA as well.","definition_xrefs":["GOC:txnOH"],"gene_count":0,"genotype_count":0,"name":"obsolete transcription factor activity, TFIIH-class binding (obsolete GO:0001090)","synonyms":[{"name":"TFIIH-class binding transcription factor activity","type":"exact"}],"termid":"GO:0001090"}


id: PBO:0086782
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Putative protein of unknown function; SWAT-GFP and seamless-GFP fusion proteins localize to the endoplasmic reticulum, while the mCherry fusion protein localizes to the vacuole","termid":"PBO:0086782"}


id: GO:1990523
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The regrowth of bone following its loss or destruction.","definition_xrefs":["PMID:25257467"],"direct_ancestors":[{"relation_name":"is_a","term_name":"tissue regeneration","termid":"GO:0042246"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"bone regeneration","termid":"GO:1990523"}


id: SO:0001364
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"5_methylaminomethyluridine is a modified uridine base feature.","direct_ancestors":[{"relation_name":"is_a","term_name":"modified_uridine","termid":"SO:0001277"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"five_methylaminomethyluridine","secondary_identifiers":["RNAMOD:072"],"synonyms":[{"name":"5-methylaminomethyluridine","type":"exact"},{"name":"five methylaminomethyluridine","type":"exact"},{"name":"mnm5U","type":"exact"}],"termid":"SO:0001364"}


id: GO:0015930
data:
  {"annotated_genes":["SJAG_04054"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[72050],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0016040"}]},"cv_name":"molecular_function","definition":"Catalysis of the formation of L-glutamine and 2-oxoglutarate from L-glutamate, using NADH, NADPH or ferredoxin as hydrogen acceptors.","definition_xrefs":["EC:1.4.-.-"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the CH-NH2 group of donors","termid":"GO:0016638"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04054":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016491"],"is_obsolete":false,"name":"glutamate synthase activity","references_by_uniquename":{"PMID:21873635":null},"termid":"GO:0015930","terms_by_termid":{"GO:0016040":null}}


id: PBO:0038959
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"adipose secreted signaling protein","termid":"PBO:0038959"}


id: FYPO:0000089
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A phenotype observed in the vegetative growth phase of the life cycle in which cells show increased sensitivity to methyl methanesulfonate. Cells stop growing (and may die) at a concentration of methyl methanesulfonate that allows wild type cells to grow.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"sensitive to DNA damaging agents","termid":"FYPO:0000266"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000139"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0002683"},{"rel_name":"is_a","termid":"FYPO:0000003"}],"interesting_parent_ids":["FYPO:0002683","FYPO:0000139","FYPO:0005447","FYPO:0001985","FYPO:0000003"],"is_obsolete":false,"name":"sensitive to methyl methanesulfonate","synonyms":[{"name":"hypersensitive to methyl methanesulfonate","type":"exact"},{"name":"sensitive to MMS","type":"exact"},{"name":"sensitive to methyl methanesulfonate during mitotic cell cycle","type":"related"},{"name":"sensitive to methyl methanesulfonate during vegetative growth","type":"exact"},{"name":"sensitive to methyl methanesulphonate","type":"exact"}],"termid":"FYPO:0000089"}


id: PBO:0059739
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MT-CO3 pseudogene 13","termid":"PBO:0059739"}


id: PBO:0051675
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"inhibitor of growth family member 5","termid":"PBO:0051675"}


id: GO:0032040
data:
  {"annotated_genes":["SJAG_00294","SJAG_02662","SJAG_02530","SJAG_04224","SJAG_00772","SJAG_02300","SJAG_03569","SJAG_04033","SJAG_02372","SJAG_05187","SJAG_03156","SJAG_00945","SJAG_01907","SJAG_03077","SJAG_03028","SJAG_03341","SJAG_02287","SJAG_00245","SJAG_02350","SJAG_04475","SJAG_01764","SJAG_02025","SJAG_02608","SJAG_00838","SJAG_00253","SJAG_00744","SJAG_02046","SJAG_00657","SJAG_00943","SJAG_02024","SJAG_04424","SJAG_02702","SJAG_03410","SJAG_00538","SJAG_03654","SJAG_02681","SJAG_00572","SJAG_00879","SJAG_05186","SJAG_03252","SJAG_04069","SJAG_04908","SJAG_02377"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[70726,71090,71102,71374,71535,71757,72433,72519,72621,73006,73069,73964,74672,74847,74868,75240,75284,75623,75823,76106,76620,77110,77227,77359,77563,77868,78136,78334,78347,78739,83511,84953,86875,87669,88241,94299,96871,101578,105481,105839,108743,110354,112505],"is_not":false,"summary":null,"term":"GO:0032040"}]},"cv_name":"cellular_component","definition":"A large ribonucleoprotein complex that is an early preribosomal complex. In S. cerevisiae, it has a size of 80S and consists of the 35S pre-rRNA, early-associating ribosomal proteins most of which are part of the small ribosomal subunit, the U3 snoRNA and associated proteins.","definition_xrefs":["PMID:12068309","PMID:15590835","GOC:krc","PMID:12957375","GOC:vw","PMID:15120992"],"direct_ancestors":[{"relation_name":"is_a","term_name":"preribosome","termid":"GO:0030684"}],"gene_count":43,"genes_by_uniquename":{"SJAG_00245":null,"SJAG_00253":null,"SJAG_00294":null,"SJAG_00538":null,"SJAG_00572":null,"SJAG_00657":null,"SJAG_00744":null,"SJAG_00772":null,"SJAG_00838":null,"SJAG_00879":null,"SJAG_00943":null,"SJAG_00945":null,"SJAG_01764":null,"SJAG_01907":null,"SJAG_02024":null,"SJAG_02025":null,"SJAG_02046":null,"SJAG_02287":null,"SJAG_02300":null,"SJAG_02350":null,"SJAG_02372":null,"SJAG_02377":null,"SJAG_02530":null,"SJAG_02608":null,"SJAG_02662":null,"SJAG_02681":null,"SJAG_02702":null,"SJAG_03028":null,"SJAG_03077":null,"SJAG_03156":null,"SJAG_03252":null,"SJAG_03341":null,"SJAG_03410":null,"SJAG_03569":null,"SJAG_03654":null,"SJAG_04033":null,"SJAG_04069":null,"SJAG_04224":null,"SJAG_04424":null,"SJAG_04475":null,"SJAG_04908":null,"SJAG_05186":null,"SJAG_05187":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0030684"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0005575","GO:0032991","GO:0030684"],"is_obsolete":false,"name":"small-subunit processome","references_by_uniquename":{"GO_REF:0000107":null,"PMID:21873635":null},"synonyms":[{"name":"SSU processome","type":"exact"},{"name":"small subunit processome","type":"exact"}],"termid":"GO:0032040","terms_by_termid":{"GO:0032040":null}}


id: PBO:0050035
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"major histocompatibility complex, class II, DR beta 3","termid":"PBO:0050035"}


id: FYPO:0000814
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which nucleolus organization is abnormal. Nucleolus organization results in the assembly, arrangement of constituent parts, or disassembly of the nucleolus.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal nucleus organization","termid":"FYPO:0000810"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0001320","FYPO:0005447","FYPO:0000002"],"is_obsolete":false,"name":"abnormal nucleolus organization","synonyms":[{"name":"abnormal nucleolus organisation","type":"exact"},{"name":"abnormal nucleolus organization during mitotic cell cycle","type":"related"},{"name":"abnormal nucleolus organization during vegetative growth","type":"exact"}],"termid":"FYPO:0000814"}


id: PBO:0091597
data:
  {"annotation_feature_type":"gene","cv_name":"warning","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"was previously incorrectly annotated as pex22","termid":"PBO:0091597"}


id: PBO:0086425
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Putative helicase with limited sequence similarity to human Rb protein; the authentic, non-tagged protein is detected in highly purified mitochondria in high-throughput studies; YLR419W is not an essential gene","termid":"PBO:0086425"}


id: PBO:0060277
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"myosin heavy chain 10","termid":"PBO:0060277"}


id: PBO:0005481
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"splicing factor Spf30 (predicted)","termid":"PBO:0005481"}


id: PR:O42862
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- atg14 gene.","definition_xrefs":["PRO:DNx","UniProtKB:O42862"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"autophagy-related protein 14 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC25A8.02","synonyms":[{"name":"Spom972h-atg14","type":"exact"}],"termid":"PR:O42862"}


id: PBO:0060386
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"myocardial zonula adherens protein","termid":"PBO:0060386"}


id: GO:0102249
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: a phosphatidylcholine + a 1,2-diacyl-sn-glycerol = a 1,2-diacyl-sn-glycerol + a phosphatidylcholine.","definition_xrefs":["EC:2.7.8.-","GOC:pz"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phosphotransferase activity, for other substituted phosphate groups","termid":"GO:0016780"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016780"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016740"}],"interesting_parent_ids":["GO:0003674","GO:0016780","GO:0016740","GO:0003824"],"is_obsolete":false,"name":"phosphatidylcholine:diacylglycerol cholinephosphotransferase activity","secondary_identifiers":["MetaCyc:RXN-12386"],"termid":"GO:0102249"}


id: PBO:0083705
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ER localized heme oxygenase; involved in heme degradation during iron starvation and in the oxidative stress response; expression is regulated by AFT1 and oxidative stress; relocates to the perinuclear region in the presence of oxidants","termid":"PBO:0083705"}


id: PBO:0110388
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MPPE1 pseudogene 2","termid":"PBO:0110388"}


id: PBO:0072170
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein S15 pseudogene 7","termid":"PBO:0072170"}


id: GO:0061801
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A laminin complex composed of alpha3B, beta3 and gamma2 polypeptide chains.","definition_xrefs":["GOC:dph","PMID:15979864"],"direct_ancestors":[{"relation_name":"is_a","term_name":"laminin complex","termid":"GO:0043256"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0005575","GO:0032991"],"is_obsolete":false,"name":"laminin-5B complex","synonyms":[{"name":"laminin 3B32 complex","type":"exact"}],"termid":"GO:0061801"}


id: PR:Q09781
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- rps101 gene.","definition_xrefs":["UniProtKB:Q09781","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"40S ribosomal protein S1-A (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC13G6.02c","synonyms":[{"name":"S3aE-A (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-rps101","type":"exact"}],"termid":"PR:Q09781"}


id: PBO:0074834
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nucleolar RNA, C/D box 29","termid":"PBO:0074834"}


id: PR:O74431
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A cation-transporting ATPase 13A3 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO04373","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cation-transporting ATPase C1672.11c (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC1672.11c","secondary_identifiers":["UniProtKB:O74431"],"synonyms":[{"name":"Spom972h-ATP13A3","type":"exact"}],"termid":"PR:O74431"}


id: GO:1900764
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving emericellin.","definition_xrefs":["GOC:TermGenie","GOC:di"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ether metabolic process","termid":"GO:0018904"},{"relation_name":"is_a","term_name":"phenol-containing compound metabolic process","termid":"GO:0018958"},{"relation_name":"is_a","term_name":"secondary metabolic process","termid":"GO:0019748"},{"relation_name":"is_a","term_name":"xanthone-containing compound metabolic process","termid":"GO:2001305"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0019748"}],"interesting_parent_ids":["GO:0019748","GO:0008150","GO:0044281"],"is_obsolete":false,"name":"emericellin metabolic process","synonyms":[{"name":"Variecoxanthone B metabolic process","type":"related"},{"name":"Variecoxanthone B metabolism","type":"related"},{"name":"emericellin metabolism","type":"exact"}],"termid":"GO:1900764"}


id: PBO:0043700
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cytochrome c oxidase subunit 5B pseudogene 6","termid":"PBO:0043700"}


id: GO:0045127
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: N-acetyl-D-glucosamine + ATP = N-acetyl-D-glucosamine 6-phosphate + ADP + 2 H+.","definition_xrefs":["RHEA:17417","EC:2.7.1.59"],"direct_ancestors":[{"relation_name":"is_a","term_name":"carbohydrate kinase activity","termid":"GO:0019200"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016301"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0016301","GO:0016740","GO:0003824"],"is_obsolete":false,"name":"N-acetylglucosamine kinase activity","secondary_identifiers":["KEGG_REACTION:R01201","MetaCyc:N-ACETYLGLUCOSAMINE-KINASE-RXN","Reactome:R-HSA-6803771"],"synonyms":[{"name":"2-acetylamino-2-deoxy-D-glucose kinase activity","type":"related"},{"name":"ATP:2-acetylamino-2-deoxy-D-glucose 6-phosphotransferase activity","type":"related"},{"name":"ATP:N-acetyl-D-glucosamine 6-phosphotransferase activity","type":"related"},{"name":"GlcNAc kinase activity","type":"related"},{"name":"acetylaminodeoxyglucokinase activity","type":"related"},{"name":"acetylglucosamine kinase (phosphorylating)","type":"related"}],"termid":"GO:0045127"}


id: PBO:0069779
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 1064, pseudogene","termid":"PBO:0069779"}


id: GO:0033485
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of cyanidin 3-O-glucoside, a basic anthocyanin responsible for red to magenta coloration of flowers and fruits.","definition_xrefs":["GOC:mah","MetaCyc:PWY-5125"],"direct_ancestors":[{"relation_name":"is_a","term_name":"flavonoid biosynthetic process","termid":"GO:0009813"},{"relation_name":"is_a","term_name":"cyanidin 3-O-glucoside metabolic process","termid":"GO:1901038"},{"relation_name":"is_a","term_name":"beta-glucoside biosynthetic process","termid":"GO:1901806"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cyanidin 3-O-glucoside biosynthetic process","synonyms":[{"name":"cyanidin 3-O-glucoside anabolism","type":"exact"},{"name":"cyanidin 3-O-glucoside biosynthesis","type":"exact"},{"name":"cyanidin 3-O-glucoside formation","type":"exact"},{"name":"cyanidin 3-O-glucoside synthesis","type":"exact"}],"termid":"GO:0033485"}


id: PBO:0081204
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger with KRAB and SCAN domains 5","termid":"PBO:0081204"}


id: PBO:0047011
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"family with sequence similarity 90 member A14","termid":"PBO:0047011"}


id: PBO:0046132
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"eukaryotic translation initiation factor 4H pseudogene 2","termid":"PBO:0046132"}


id: GO:0061502
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The directed movement of substances, in membrane-bounded vesicles, from the early sorting endosomes to the recycling endosomes.","definition_xrefs":["GOC:kmv","PMID:21474295","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"vesicle-mediated transport between endosomal compartments","termid":"GO:0098927"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0016192"},{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0051179"}],"interesting_parent_ids":["GO:0051179","GO:0016192","GO:0008150","GO:0006810"],"is_obsolete":false,"name":"early endosome to recycling endosome transport","termid":"GO:0061502"}


id: GO:1904925
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of autophagy of the mitochondrion in response to mitochondrial depolarization.","definition_xrefs":["PMID:22020285","GO_REF:0000058","GOC:pad","GOC:PARL","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of autophagy of mitochondrion in response to mitochondrial depolarization","termid":"GO:1904923"},{"relation_name":"positively_regulates","term_name":"autophagy of mitochondrion","termid":"GO:0000422"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"positively_regulates","termid":"GO:0007005"},{"rel_name":"regulates","termid":"GO:0007005"},{"rel_name":"positively_regulates","termid":"GO:0006914"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0006914"},{"rel_name":"positively_regulates","termid":"GO:0044248"},{"rel_name":"regulates","termid":"GO:0044248"}],"interesting_parent_ids":["GO:0007005","GO:0006914","GO:0044248","GO:0008150"],"is_obsolete":false,"name":"positive regulation of autophagy of mitochondrion in response to mitochondrial depolarization","synonyms":[{"name":"activation of mitophagy in response to mitochondrial depolarization","type":"narrow"},{"name":"up regulation of mitophagy in response to mitochondrial depolarization","type":"exact"},{"name":"up-regulation of mitophagy in response to mitochondrial depolarization","type":"exact"},{"name":"upregulation of mitophagy in response to mitochondrial depolarization","type":"exact"}],"termid":"GO:1904925"}


id: GO:0015164
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Enables the transfer of a glucuronosides from one side of a membrane to the other. Glucuronosides are any compound formed by combination of glycosidic linkage of a hydroxy compound (e.g. an alcohol or a saccharide) with the anomeric carbon atom of glucuronate.","definition_xrefs":["GOC:ai","GOC:mtg_transport","ISBN:0815340729"],"direct_ancestors":[{"relation_name":"is_a","term_name":"carbohydrate derivative transmembrane transporter activity","termid":"GO:1901505"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005215"}],"interesting_parent_ids":["GO:0005215","GO:0003674","GO:0022857"],"is_obsolete":false,"name":"glucuronoside transmembrane transporter activity","synonyms":[{"name":"glucuronide transporter activity","type":"exact"}],"termid":"GO:0015164"}


id: PBO:0087127
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA binding protein; part of U3 snoRNP involved in rRNA processing, part of U4/U6-U5 tri-snRNP involved in mRNA splicing, similar to human 15.5K protein","termid":"PBO:0087127"}


id: PBO:0034698
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"exon junction complex subunit, ATP-dependent RNA helicase Fal1","termid":"PBO:0034698"}


id: PBO:0056134
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"lysozyme like 4","termid":"PBO:0056134"}


id: PBO:0002144
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DUF654 family protein","termid":"PBO:0002144"}


id: FYPO:0001504
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype in which the amount of trehalose measured in a cell is lower than normal during sporulation.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased cellular trehalose level","termid":"FYPO:0001447"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001985"],"is_obsolete":false,"name":"decreased cellular trehalose level during sporulation","synonyms":[{"name":"decreased cellular trehalose accumulation during sporulation","type":"related"},{"name":"reduced cellular trehalose level during sporulation","type":"exact"}],"termid":"FYPO:0001504"}


id: SO:0001374
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"5_carboxymethyluridine is a modified uridine base feature.","direct_ancestors":[{"relation_name":"is_a","term_name":"modified_uridine","termid":"SO:0001277"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"five_carboxymethyluridine","secondary_identifiers":["RNAMOD:087"],"synonyms":[{"name":"5-carboxymethyluridine","type":"exact"},{"name":"cm5U","type":"exact"},{"name":"five carboxymethyluridine","type":"exact"}],"termid":"SO:0001374"}


id: PBO:0066244
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA binding motif single stranded interacting protein 1 pseudogene 1","termid":"PBO:0066244"}


id: GO:1900189
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of cell adhesion involved in single-species biofilm formation.","definition_xrefs":["GOC:di","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of cell-substrate adhesion","termid":"GO:0010811"},{"relation_name":"is_a","term_name":"regulation of cell adhesion involved in single-species biofilm formation","termid":"GO:1900187"},{"relation_name":"positively_regulates","term_name":"cell adhesion involved in single-species biofilm formation","termid":"GO:0043709"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0007155"},{"rel_name":"positively_regulates","termid":"GO:0007155"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0007155","GO:0008150"],"is_obsolete":false,"name":"positive regulation of cell adhesion involved in single-species biofilm formation","synonyms":[{"name":"activation of cell adhesion during single-species biofilm formation","type":"related"},{"name":"activation of cell adhesion involved in single-species biofilm formation","type":"narrow"},{"name":"positive regulation of cell adhesion during single-species biofilm formation","type":"related"},{"name":"up regulation of cell adhesion during single-species biofilm formation","type":"related"},{"name":"up regulation of cell adhesion involved in single-species biofilm formation","type":"exact"},{"name":"up-regulation of cell adhesion during single-species biofilm formation","type":"related"},{"name":"up-regulation of cell adhesion involved in single-species biofilm formation","type":"exact"},{"name":"upregulation of cell adhesion during single-species biofilm formation","type":"related"},{"name":"upregulation of cell adhesion involved in single-species biofilm formation","type":"exact"}],"termid":"GO:1900189"}


id: PBO:0054644
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2049","termid":"PBO:0054644"}


id: PBO:0000635
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"regulator of G-protein signaling (RGS) domain (predicted)","termid":"PBO:0000635"}


id: GO:0019811
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to cocaine (2-beta-carbomethoxy-3-beta-benzoxytropane), an alkaloid obtained from dried leaves of the South American shrub Erythroxylon coca or by chemical synthesis.","definition_xrefs":["GOC:jl","ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cation binding","termid":"GO:0043169"},{"relation_name":"is_a","term_name":"organic cyclic compound binding","termid":"GO:0097159"},{"relation_name":"is_a","term_name":"heterocyclic compound binding","termid":"GO:1901363"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005488"}],"interesting_parent_ids":["GO:0003674","GO:0005488"],"is_obsolete":false,"name":"cocaine binding","termid":"GO:0019811"}


id: GO:1900675
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of F-9775B biosynthetic process.","definition_xrefs":["GOC:TermGenie","GOC:di"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of polyketide biosynthetic process","termid":"GO:1900732"},{"relation_name":"regulates","term_name":"F-9775B biosynthetic process","termid":"GO:1900614"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0044281"},{"rel_name":"regulates","termid":"GO:0019748"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0019748","GO:0008150","GO:0044281"],"is_obsolete":false,"name":"regulation of F-9775B biosynthetic process","synonyms":[{"name":"regulation of F-9775B anabolism","type":"exact"},{"name":"regulation of F-9775B biosynthesis","type":"exact"},{"name":"regulation of F-9775B formation","type":"exact"},{"name":"regulation of F-9775B synthesis","type":"exact"}],"termid":"GO:1900675"}


id: PBO:0051380
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"immunoglobulin kappa variable 6D-21 (non-functional)","termid":"PBO:0051380"}


id: PATO:0001104
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0001104 strain value (obsolete PATO:0001104)","termid":"PATO:0001104"}


id: GO:0019287
data:
  {"annotated_genes":["SJAG_03715","SJAG_03349","SJAG_04865","SJAG_01187","SJAG_01474","SJAG_02380"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[73909,76112,78558,110077],"is_not":false,"summary":null,"term":"GO:0019287"},{"annotations":[110621,106619],"is_not":false,"rel_names":["negatively_regulates","regulates"],"summary":null,"term":"GO:2001211"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of isopentenyl diphosphate, via the intermediate mevalonate. This pathway converts acetate, in the form of acetyl-CoA, to isopentenyl diphosphate (IPP), the fundamental unit in isoprenoid biosynthesis, through a series of mevalonate intermediates.","definition_xrefs":["MetaCyc:PWY-922","GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"acetyl-CoA metabolic process","termid":"GO:0006084"},{"relation_name":"is_a","term_name":"isopentenyl diphosphate biosynthetic process","termid":"GO:0009240"}],"gene_count":6,"genes_by_uniquename":{"SJAG_01187":null,"SJAG_01474":null,"SJAG_02380":null,"SJAG_03349":null,"SJAG_03715":null,"SJAG_04865":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0006629"},{"rel_name":"is_a","termid":"GO:0006790"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0055086"},{"rel_name":"is_a","termid":"GO:0006629"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006629","GO:0006790","GO:0008150","GO:0055086","GO:0044281"],"is_obsolete":false,"name":"isopentenyl diphosphate biosynthetic process, mevalonate pathway","references_by_uniquename":{"GO_REF:0000107":null,"PMID:21873635":null},"synonyms":[{"name":"Ac-MVA pathway","type":"exact"},{"name":"acetate-mevalonate pathway","type":"exact"},{"name":"isopentenyl diphosphate anabolism, mevalonate pathway","type":"exact"},{"name":"isopentenyl diphosphate biosynthetic process via mevalonate","type":"exact"},{"name":"isopentenyl diphosphate formation, mevalonate pathway","type":"exact"},{"name":"isopentenyl diphosphate synthesis, mevalonate pathway","type":"exact"}],"termid":"GO:0019287","terms_by_termid":{"GO:0019287":null,"GO:2001211":null}}


id: PBO:0088252
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial mRNA processing protein Cox24/Pet20","termid":"PBO:0088252"}


id: SO:0000860
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"Attribute describing sequence regions occurring in same order on chromosome of different species.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"conserved","termid":"SO:0000856"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"syntenic","secondary_identifiers":["http://en.wikipedia.org/wiki/Syntenic"],"termid":"SO:0000860"}


id: PBO:0039546
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ANKRD42 divergent transcript","termid":"PBO:0039546"}


id: MOD:00411
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"modification from Unimod Isotopic label. OBSOLETE because Unimod:18 is now merged with entry 258 remap to MOD:00581 'single 018 label'","definition_xrefs":["PubMed:18688235"],"gene_count":0,"genotype_count":0,"name":"OBSOLETE MOD:00411 O18 label (obsolete MOD:00411)","termid":"MOD:00411"}


id: PBO:0073781
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"solute carrier family 5 member 3","termid":"PBO:0073781"}


id: MOD:00368
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-methionine residue to N-carboxy-L-methionine.","definition_xrefs":["PubMed:8312270","Unimod:299#M","PubMed:10368287","PubMed:12595263","PubMed:11120890","RESID:AA0363"],"direct_ancestors":[{"relation_name":"is_a","term_name":"modified L-methionine residue","termid":"MOD:00913"},{"relation_name":"is_a","term_name":"carboxylated residue","termid":"MOD:01152"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"N-carboxy-L-methionine","synonyms":[{"name":"(S)-2-carboxyamino-4-(methylsulfanyl)butanoic acid","type":"exact"},{"name":"2-carbamic-4-(methylsulfanyl)butanoic acid","type":"exact"},{"name":"2-carbamic-4-(methylthio)butanoic acid","type":"exact"},{"name":"Carboxy","type":"related"},{"name":"Carboxylation","type":"related"},{"name":"N-carboxy-L-methionine","type":"exact"},{"name":"N-carboxymethionine","type":"exact"}],"termid":"MOD:00368"}


id: PBO:0038487
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ABCB10 pseudogene 3","termid":"PBO:0038487"}


id: GO:0071828
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which chylomicron remnant-associated apolipoprotein E is internalized by endocytosis, localized to recycling endosomes and then secreted in association with a high-density lipoprotein particle.","definition_xrefs":["PMID:16373604","GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein transport","termid":"GO:0015031"},{"relation_name":"part_of","term_name":"high-density lipoprotein particle assembly","termid":"GO:0034380"},{"relation_name":"part_of","term_name":"chylomicron remnant clearance","termid":"GO:0034382"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0044085"},{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"part_of","termid":"GO:0065003"}],"interesting_parent_ids":["GO:0008150","GO:0051179","GO:0065003","GO:0006810","GO:0044085"],"is_obsolete":false,"name":"apolipoprotein E recycling","synonyms":[{"name":"APOE recycling","type":"exact"}],"termid":"GO:0071828"}


id: GO:0034173
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate, or extent of toll-like receptor 11 signaling pathway.","definition_xrefs":["GOC:add","PMID:16551253","PMID:17328678"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of toll-like receptor 11 signaling pathway","termid":"GO:0034171"},{"relation_name":"is_a","term_name":"positive regulation of pattern recognition receptor signaling pathway","termid":"GO:0062208"},{"relation_name":"positively_regulates","term_name":"toll-like receptor 11 signaling pathway","termid":"GO:0034170"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"positively_regulates","termid":"GO:0023052"},{"rel_name":"regulates","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"positive regulation of toll-like receptor 11 signaling pathway","synonyms":[{"name":"positive regulation of TLR11 signaling pathway","type":"exact"},{"name":"positive regulation of toll-like receptor 11 signalling pathway","type":"exact"}],"termid":"GO:0034173"}


id: PBO:0031322
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-sensitive_to_menadione","termid":"PBO:0031322"}


id: PBO:0052399
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Kin17 DNA and RNA binding protein","termid":"PBO:0052399"}


id: PATO:0000799
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0000799 muscle elevation value (obsolete PATO:0000799)","termid":"PATO:0000799"}


id: FYPO:0000825
data:
  {"alleles_by_uniquename":{"SJAG_02621:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_02621","name":"ago1delta","uniquename":"SJAG_02621:allele-1"},"SJAG_03118:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_03118","name":"leo1delta","uniquename":"SJAG_03118:allele-1"},"SJAG_03689:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_03689","name":"dcr1delta","uniquename":"SJAG_03689:allele-1"}},"annotation_feature_type":"genotype","cv_annotations":{"multi_locus_phenotype":[{"annotations":[114465,114463],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0004982"},{"annotations":[114466,114464],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0004573"}],"single_locus_phenotype":[{"annotations":[114451],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0004982"},{"annotations":[114450],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0004574"}]},"cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of RNA measured in a cell is higher than normal. Total RNA or a specific RNA, such as the mRNA transcribed from a gene of interest, may be affected.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"altered RNA level during vegetative growth","termid":"FYPO:0001326"},{"relation_name":"is_a","term_name":"increased level of substance in cell during vegetative growth","termid":"FYPO:0001330"},{"relation_name":"is_a","term_name":"increased RNA level","termid":"FYPO:0001890"}],"gene_count":3,"genes_by_uniquename":{"SJAG_02621":null,"SJAG_03118":null,"SJAG_03689":null},"genotype_count":3,"genotypes_by_uniquename":{"ago1delta__leo1delta":{"display_name":"ago1delta leo1delta","display_uniquename":"ago1delta__leo1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_02621:allele-1","expression":"Null"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_03118:allele-1","expression":"Null"}]}]},"dcr1delta":{"display_name":"dcr1delta","display_uniquename":"dcr1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03689:allele-1","expression":"Null"}]}]},"dcr1delta__leo1delta":{"display_name":"dcr1delta leo1delta","display_uniquename":"dcr1delta__leo1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03689:allele-1","expression":"Null"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_03118:allele-1","expression":"Null"}]}]}},"interesting_parent_details":[{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"output_of","termid":"FYPO:0006551"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0001985","FYPO:0005447","FYPO:0000002","FYPO:0006551"],"is_obsolete":false,"multi_locus_annotated_genes":["SJAG_03689","SJAG_02621","SJAG_03118"],"name":"increased RNA level during vegetative growth","references_by_uniquename":{"PMID:35226668":null},"secondary_identifiers":["FYPO:0002936","FYPO:0000910","FYPO:0001247"],"single_locus_annotated_genes":["SJAG_03689"],"single_locus_genotype_uniquenames":["dcr1delta"],"synonyms":[{"name":"RNA accumulation during vegetative growth","type":"related"},{"name":"RNA accumulation: increased during vegetative growth","type":"related"},{"name":"increased RNA accumulation during vegetative growth","type":"related"},{"name":"increased RNA level during mitotic cell cycle","type":"related"},{"name":"increased cellular RNA level during vegetative growth","type":"exact"},{"name":"increased cellular mRNA level during vegetative growth","type":"narrow"},{"name":"increased mRNA accumulation during vegetative growth","type":"related"},{"name":"increased mRNA level during mitotic cell cycle","type":"related"},{"name":"increased mRNA level during vegetative growth","type":"narrow"},{"name":"increased mRNA transcript level during vegetative growth","type":"narrow"},{"name":"increased messenger RNA level during vegetative growth","type":"narrow"},{"name":"increased transcript level during vegetative growth","type":"exact"}],"termid":"FYPO:0000825","terms_by_termid":{"FYECO:0000005":null,"FYECO:0000162":null,"FYPO:0004573":null,"FYPO:0004574":null,"FYPO:0004982":null}}


id: PBO:0039670
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"adaptor related protein complex 4 subunit beta 1","termid":"PBO:0039670"}


id: GO:0160071
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The regulation of double fertilization forming a zygote and endosperm process that ensures that only a single sperm cell fertilizes one egg cell and another single sperm cell fertilizes one central cell.","definition_xrefs":["PMID:27951463"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of double fertilization forming a zygote and endosperm","termid":"GO:0080155"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"prevention of polyspermy during double fertilization","termid":"GO:0160071"}


id: PBO:0084279
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Integral membrane protein of the endoplasmic reticulum; required for normal content of cell wall beta-1,6-glucan","termid":"PBO:0084279"}


id: SO:0001309
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"2_methylthio_N6_hydroxynorvalyl_carbamoyladenosine is a modified adenosine.","direct_ancestors":[{"relation_name":"is_a","term_name":"modified_adenosine","termid":"SO:0001273"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"two_methylthio_N6_hydroxynorvalyl_carbamoyladenosine","secondary_identifiers":["RNAMOD:015"],"synonyms":[{"name":"2-methylthio-N6-hydroxynorvalyl carbamoyladenosine","type":"exact"},{"name":"ms2hn6A","type":"exact"},{"name":"two methylthio N6 hydroxynorvalyl carbamoyladenosine","type":"exact"}],"termid":"SO:0001309"}


id: GO:1904062
data:
  {"annotated_genes":["SJAG_03631","SJAG_04551","SJAG_00296"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[86864,108571],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1905949"},{"annotations":[97585],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1905665"}]},"cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of cation transmembrane transport.","definition_xrefs":["GO_REF:0000058","GOC:TermGenie","PMID:15304482"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of monoatomic ion transmembrane transport","termid":"GO:0034765"},{"relation_name":"regulates","term_name":"monoatomic cation transmembrane transport","termid":"GO:0098655"}],"gene_count":3,"genes_by_uniquename":{"SJAG_00296":null,"SJAG_03631":null,"SJAG_04551":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0055085"}],"interesting_parent_ids":["GO:0006810","GO:0008150","GO:0055085"],"is_obsolete":false,"name":"regulation of monoatomic cation transmembrane transport","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"regulation of cation transmembrane transport","type":"broad"}],"termid":"GO:1904062","terms_by_termid":{"GO:1905665":null,"GO:1905949":null}}


id: GO:0070036
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: GTP + H2O = GDP + phosphate, to drive the unwinding of a DNA or RNA helix.","definition_xrefs":["GOC:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete GTP-dependent helicase activity (obsolete GO:0070036)","termid":"GO:0070036"}


id: PBO:0045681
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dynein light chain LC8-type 1 pseudogene 1","termid":"PBO:0045681"}


id: FYPO:0005459
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which double-strand break repair via nonhomologous end joining (NHEJ) does not occur.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abolished double-strand break repair","termid":"FYPO:0005436"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000293"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000298"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0000293","FYPO:0001320","FYPO:0005447","FYPO:0000298","FYPO:0001985","FYPO:0000002"],"is_obsolete":false,"name":"abolished double-strand break repair via nonhomologous end joining","synonyms":[{"name":"abolished double-strand break repair via NHEJ","type":"exact"},{"name":"abolished double-strand break repair via nonhomologous end joining during mitotic cell cycle","type":"related"},{"name":"abolished double-strand break repair via nonhomologous end joining during vegetative growth","type":"exact"},{"name":"double-strand break repair via nonhomologous end joining abolished","type":"exact"}],"termid":"FYPO:0005459"}


id: GO:0009902
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which chloroplasts in photosynthetic cells migrate toward illuminated sites to optimize photosynthesis and move away from excessively illuminated areas to protect the photosynthetic machinery.","definition_xrefs":["PMID:11309623"],"direct_ancestors":[{"relation_name":"is_a","term_name":"chloroplast organization","termid":"GO:0009658"},{"relation_name":"is_a","term_name":"chloroplast localization","termid":"GO:0019750"},{"relation_name":"is_a","term_name":"establishment of plastid localization","termid":"GO:0051667"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0051179"],"is_obsolete":false,"name":"chloroplast relocation","synonyms":[{"name":"chloroplast movement","type":"exact"}],"termid":"GO:0009902"}


id: PBO:0049185
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"grainyhead like transcription factor 2","termid":"PBO:0049185"}


id: PBO:0081288
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein 72A, pseudogene","termid":"PBO:0081288"}


id: GO:0033632
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate, or extent of cell-cell adhesion mediated by integrin.","definition_xrefs":["GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of cell-cell adhesion","termid":"GO:0022407"},{"relation_name":"is_a","term_name":"regulation of cell adhesion mediated by integrin","termid":"GO:0033628"},{"relation_name":"regulates","term_name":"cell-cell adhesion mediated by integrin","termid":"GO:0033631"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0007155"}],"interesting_parent_ids":["GO:0008150","GO:0007155"],"is_obsolete":false,"name":"regulation of cell-cell adhesion mediated by integrin","synonyms":[{"name":"regulation of cell-cell adhesion mediated by integrin complex","type":"exact"}],"termid":"GO:0033632"}


id: PBO:0045027
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DIS3 homolog, exosome endoribonuclease and 3'-5' exoribonuclease","termid":"PBO:0045027"}


id: FYPO:0004212
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype in which the localization of a protein to the kinetochore of a chromosome is decreased during the first meiotic nuclear division.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal protein localization to kinetochore during meiosis","termid":"FYPO:0004762"},{"relation_name":"is_a","term_name":"decreased protein localization to centromere","termid":"FYPO:0006238"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0000138","FYPO:0005447","FYPO:0001985"],"is_obsolete":false,"name":"decreased protein localization to kinetochore during meiosis I","synonyms":[{"name":"decreased protein localisation to kinetochore during meiosis I","type":"exact"},{"name":"decreased protein localization to kinetochore during first meiotic nuclear division","type":"exact"},{"name":"decreased protein localization to meiotic kinetochore during meiosis I","type":"exact"},{"name":"reduced protein localization to kinetochore during meiosis I","type":"exact"}],"termid":"FYPO:0004212"}


id: GO:0071598
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A ribonucleoprotein complex that is found in the cytoplasm of axons and dendrites, and transports translationally silenced mRNAs to dendritic synapses, where they are released and translated in response to specific exogenous stimuli.","definition_xrefs":["GOC:BHF","GOC:go_curators","GOC:mah","PMID:20368989","PMID:19015237"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cytoplasmic ribonucleoprotein granule","termid":"GO:0036464"},{"relation_name":"part_of","term_name":"neuron projection cytoplasm","termid":"GO:0120111"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005737"}],"interesting_parent_ids":["GO:0005575","GO:0005737"],"is_obsolete":false,"name":"neuronal ribonucleoprotein granule","synonyms":[{"name":"neuronal RNA granule","type":"narrow"},{"name":"neuronal RNP granule","type":"exact"}],"termid":"GO:0071598"}


id: PBO:0032736
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"post-Golgi vesicle-mediated transport protein Avl9 (predicted)","termid":"PBO:0032736"}


id: PBO:0004119
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"M-factor transporter Mam1","termid":"PBO:0004119"}


id: FYPO:0000049
data:
  {"alleles_by_uniquename":{"SJAG_00409:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_00409","name":"gpd1delta","uniquename":"SJAG_00409:allele-1"},"SJAG_00871:allele-1":{"allele_type":"amino_acid_mutation","description":"cut3-T19E","gene_uniquename":"SJAG_00871","name":"cut3-T19E","uniquename":"SJAG_00871:allele-1"},"SJAG_04332:allele-1":{"allele_type":"amino_acid_mutation","description":"I30T,T572P","gene_uniquename":"SJAG_04332","name":"cdc25-D9","uniquename":"SJAG_04332:allele-1"},"SJAG_04464:allele-1":{"allele_type":"amino_acid_mutation","description":"R152C","gene_uniquename":"SJAG_04464","name":"pim1-R152C","synonyms":[{"name":"Inferred CDK-phospho-mimic mutation","reference":"PMID:28954740","type":"exact"}],"uniquename":"SJAG_04464:allele-1"},"SJAG_04697:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_04697","name":"gms1delta","uniquename":"SJAG_04697:allele-1"}},"annotation_feature_type":"genotype","cv_annotations":{"multi_locus_phenotype":[{"annotations":[114478],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0001489"}],"single_locus_phenotype":[{"annotations":[114118],"is_not":false,"rel_names":["is_a","has_part"],"summary":null,"term":"FYPO:0008029"},{"annotations":[114389],"is_not":false,"rel_names":["is_a","has_part"],"summary":null,"term":"FYPO:0007701"},{"annotations":[114354],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0001489"},{"annotations":[114475],"is_not":false,"rel_names":["is_a","has_part"],"summary":null,"term":"FYPO:0003976"}]},"cv_name":"fission_yeast_phenotype","definition":"A viability phenotype in which a cell is unable to survive under conditions in which wild type cells survive.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell viability","termid":"FYPO:0000004"}],"gene_count":5,"genes_by_uniquename":{"SJAG_00409":null,"SJAG_00871":null,"SJAG_04332":null,"SJAG_04464":null,"SJAG_04697":null},"genotype_count":5,"genotypes_by_uniquename":{"cdc25-D9-I30T,T572P-amino_acid_mutation-expression-not_assayed_or_wild_type":{"display_name":"cdc25-D9(I30T,T572P aa)","display_uniquename":"cdc25-D9-I30T,T572P-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04332:allele-1","expression":"Not assayed or wild type"}]}]},"cut3-T19E-cut3-T19E-amino_acid_mutation-expression-not_assayed_or_wild_type__pim1-R152C-R152C-amino_acid_mutation-expression-not_assayed_or_wild_type":{"display_name":"cut3-T19E(aa) pim1-R152C(aa)","display_uniquename":"cut3-T19E-cut3-T19E-amino_acid_mutation-expression-not_assayed_or_wild_type__pim1-R152C-R152C-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_00871:allele-1","expression":"Not assayed or wild type"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_04464:allele-1","expression":"Not assayed or wild type"}]}]},"gms1delta":{"display_name":"gms1delta","display_uniquename":"gms1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04697:allele-1","expression":"Null"}]}]},"gpd1delta":{"display_name":"gpd1delta","display_uniquename":"gpd1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_00409:allele-1","expression":"Null"}]}]},"pim1-R152C-R152C-amino_acid_mutation-expression-not_assayed_or_wild_type":{"display_name":"pim1-R152C(aa)","display_uniquename":"pim1-R152C-R152C-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04464:allele-1","expression":"Not assayed or wild type"}]}]}},"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000004"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0000004"],"is_obsolete":false,"multi_locus_annotated_genes":["SJAG_04464","SJAG_00871"],"name":"inviable cell","references_by_uniquename":{"PMID:25866389":null,"PMID:28954740":null,"PMID:36058798":null,"PMID:37164017":null},"single_locus_annotated_genes":["SJAG_04464","SJAG_04697","SJAG_00409","SJAG_04332"],"single_locus_genotype_uniquenames":["gms1delta","pim1-R152C-R152C-amino_acid_mutation-expression-not_assayed_or_wild_type","gpd1delta","cdc25-D9-I30T,T572P-amino_acid_mutation-expression-not_assayed_or_wild_type"],"synonyms":[{"name":"lethal in cell","type":"exact"}],"termid":"FYPO:0000049","terms_by_termid":{"FYECO:0000004":null,"FYECO:0000005":null,"FYECO:0000126":null,"FYECO:0000137":null,"FYPO:0001489":null,"FYPO:0003976":null,"FYPO:0007701":null,"FYPO:0008029":null,"FYPO_EXT:0000001":null}}


id: PATO:0000196
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0000196 vocalization (obsolete PATO:0000196)","termid":"PATO:0000196"}


id: GO:0050844
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The modification of peptidyl-selenocysteine.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"peptidyl-amino acid modification","termid":"GO:0018193"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"peptidyl-selenocysteine modification","termid":"GO:0050844"}


id: PR:O14264
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- dfg10 gene.","definition_xrefs":["UniProtKB:O14264","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized protein C7D4.09c (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC7D4.09c","synonyms":[{"name":"Spom972h-dfg10","type":"exact"}],"termid":"PR:O14264"}


id: PBO:0068292
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Rho family GTPase 1","termid":"PBO:0068292"}


id: PBO:0003512
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"WD repeat protein, human WDR6 family, implicated in cell cycle","termid":"PBO:0003512"}


id: PBO:0030527
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abolished_protein_localization_to_chromatin","termid":"PBO:0030527"}


id: GO:1901030
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of mitochondrial outer membrane permeabilization involved in apoptotic signaling pathway.","definition_xrefs":["GOC:mtg_apoptosis","GOC:BHF","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of mitochondrion organization","termid":"GO:0010822"},{"relation_name":"is_a","term_name":"positive regulation of mitochondrial membrane permeability","termid":"GO:0035794"},{"relation_name":"is_a","term_name":"positive regulation of transport","termid":"GO:0051050"},{"relation_name":"is_a","term_name":"regulation of mitochondrial outer membrane permeabilization involved in apoptotic signaling pathway","termid":"GO:1901028"},{"relation_name":"positively_regulates","term_name":"mitochondrial outer membrane permeabilization","termid":"GO:0097345"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0061024"},{"rel_name":"positively_regulates","termid":"GO:0061024"},{"rel_name":"regulates","termid":"GO:0007005"},{"rel_name":"part_of","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0007005"},{"rel_name":"positively_regulates","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0061024"},{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"positively_regulates","termid":"GO:0007005"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0007005","GO:0006810","GO:0061024"],"is_obsolete":false,"name":"positive regulation of mitochondrial outer membrane permeabilization involved in apoptotic signaling pathway","synonyms":[{"name":"up regulation of MOMP","type":"exact"},{"name":"activation of MOMP","type":"narrow"},{"name":"activation of mitochondrial outer membrane permeabilization","type":"narrow"},{"name":"positive regulation of MOMP","type":"exact"},{"name":"positive regulation of mitochondrial outer membrane permeabilization","type":"broad"},{"name":"up regulation of mitochondrial outer membrane permeabilization","type":"exact"},{"name":"up-regulation of MOMP","type":"exact"},{"name":"up-regulation of mitochondrial outer membrane permeabilization","type":"exact"},{"name":"upregulation of MOMP","type":"exact"},{"name":"upregulation of mitochondrial outer membrane permeabilization","type":"exact"}],"termid":"GO:1901030"}


id: PBO:0087293
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Similar to 6-phosphofructo-2-kinase enzymes; mRNA expression is repressed by the Rfx1p-Tup1p-Ssn6p repressor complex; YLR345W is not an essential gene","termid":"PBO:0087293"}


id: GO:0035393
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The appearance of chemokine (C-X-C motif) ligand 9 due to biosynthesis or secretion following a cellular stimulus, resulting in an increase in its intracellular or extracellular levels.","definition_xrefs":["GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"chemokine production","termid":"GO:0032602"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0010467"],"is_obsolete":false,"name":"chemokine (C-X-C motif) ligand 9 production","synonyms":[{"name":"CXCL9 production","type":"exact"},{"name":"MIG production","type":"exact"},{"name":"Monokine induced by gamma interferon production","type":"exact"}],"termid":"GO:0035393"}


id: MOD:01291
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"OBSOLETE because redundant and identical to MOD:00464. Remap to MOD:00464.","definition_xrefs":["Unimod:425","PubMed:12686488","PubMed:9252331","PubMed:6273432","PubMed:12643539"],"gene_count":0,"genotype_count":0,"name":"OBSOLETE MOD:01291 dihydroxylated residue - site W (obsolete MOD:01291)","synonyms":[{"name":"Dioxidation","type":"related"},{"name":"dihydroxy","type":"related"}],"termid":"MOD:01291"}


id: PR:Q9P789
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- puf2 gene.","definition_xrefs":["UniProtKB:Q9P789","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pumilio domain-containing protein P35G2.14 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBP35G2.14","synonyms":[{"name":"Spom972h-puf2","type":"exact"}],"termid":"PR:Q9P789"}


id: GO:0070027
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to and responding, e.g. by conformational change, to changes in the cellular level of carbon monoxide (CO).","definition_xrefs":["GOC:ecd"],"direct_ancestors":[{"relation_name":"is_a","term_name":"small molecule sensor activity","termid":"GO:0140299"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0140299"}],"interesting_parent_ids":["GO:0003674","GO:0140299"],"is_obsolete":false,"name":"carbon monoxide sensor activity","synonyms":[{"name":"carbon monoxide sensing activity","type":"exact"}],"termid":"GO:0070027"}


id: PBO:0049688
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"heart and neural crest derivatives expressed 1","termid":"PBO:0049688"}


id: PBO:0083322
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Dubious open reading frame; unlikely to encode a functional protein, based on available experimental and comparative sequence data; overlaps ORF SAP1/YER047C","termid":"PBO:0083322"}


id: PBO:0012277
data:
  {"annotation_feature_type":"gene","cv_name":"name_description","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pombe methyltransferase","termid":"PBO:0012277"}


id: PBO:0000344
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SNARE Sft1 (predicted)","termid":"PBO:0000344"}


id: SO:0001457
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A region defined by a set of transcribed sequences from the same gene or expressed pseudogene.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"has_part","term_name":"reagent","termid":"SO:0000695"},{"relation_name":"is_a","term_name":"experimental_feature","termid":"SO:0001410"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transcribed_cluster","synonyms":[{"name":"transcribed cluster","type":"exact"},{"name":"unigene cluster","type":"related"}],"termid":"SO:0001457"}


id: GO:0009837
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A fruit ripening process that does not involve a respiratory burst.","definition_xrefs":["GOC:lr","ISBN:0521587840"],"direct_ancestors":[{"relation_name":"is_a","term_name":"fruit ripening","termid":"GO:0009835"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"fruit ripening, non-climacteric","termid":"GO:0009837"}


id: GO:0035003
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The most apical region of the lateral plasma membrane of an invertebrate epithelial cell. The subapical complex lies above the zonula adherens and the septate junction, and is comparable to the position of the tight junction of vertebrate cells.","definition_xrefs":["PMID:11752566","PMID:12500938"],"direct_ancestors":[{"relation_name":"is_a","term_name":"plasma membrane protein complex","termid":"GO:0098797"},{"relation_name":"part_of","term_name":"apical junction complex","termid":"GO:0043296"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005886"}],"interesting_parent_ids":["GO:0032991","GO:0005575","GO:0005886"],"is_obsolete":false,"name":"subapical complex","synonyms":[{"name":"SAC","type":"broad"}],"termid":"GO:0035003"}


id: PBO:0042230
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cyclin Y like 2 (pseudogene)","termid":"PBO:0042230"}


id: PBO:0058063
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 4283-1","termid":"PBO:0058063"}


id: GO:0102647
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: sedoheptulose 7-phosphate + D-ribose 5-phosphate = D-glycero-D-altro-octulose 8-phosphate + D-erythrose 4-phosphate.","definition_xrefs":["GOC:pz","EC:2.2.1.-"],"direct_ancestors":[{"relation_name":"is_a","term_name":"transketolase or transaldolase activity","termid":"GO:0016744"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016744"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003824","GO:0016740","GO:0016744","GO:0003674"],"is_obsolete":false,"name":"D-ribose 5-phosphate:D-sedoheptulose 7-phosphate transaldolase activity","secondary_identifiers":["MetaCyc:RXN-15789"],"termid":"GO:0102647"}


id: GO:0052011
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The chemical reactions and pathways performed by an organism resulting in the breakdown of pectin in the host cell wall. The host is defined as the larger of the organisms involved in a symbiotic interaction.","definition_xrefs":["ISBN:0198547684"],"gene_count":0,"genotype_count":0,"name":"obsolete catabolism by symbiont of host cell wall pectin (obsolete GO:0052011)","synonyms":[{"name":"catabolism by organism of host cell wall pectin","type":"exact"}],"termid":"GO:0052011"}


id: GO:0050441
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: butanoyl-CoA + glyoxylate + H2O = 3-ethylmalate + CoA + H+.","definition_xrefs":["RHEA:10500"],"direct_ancestors":[{"relation_name":"is_a","term_name":"acyltransferase activity, acyl groups converted into alkyl on transfer","termid":"GO:0046912"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016746"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003824","GO:0016746","GO:0016740","GO:0003674"],"is_obsolete":false,"name":"3-ethylmalate synthase activity","secondary_identifiers":["MetaCyc:3-ETHYLMALATE-SYNTHASE-RXN","KEGG_REACTION:R01180","EC:2.3.3.7"],"synonyms":[{"name":"2-ethyl-3-hydroxybutanedioate synthase activity","type":"related"},{"name":"3-ethylmalate glyoxylate-lyase (CoA-butanoylating) activity","type":"related"},{"name":"butanoyl-CoA:glyoxylate C-butanoyltransferase (thioester-hydrolysing, 1-carboxypropyl-forming)","type":"related"}],"termid":"GO:0050441"}


id: PBO:0027109
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_cellular_protein_aggregate_level_during_cellular_response_to_heat","termid":"PBO:0027109"}


id: PBO:0077331
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transmembrane protein 68","termid":"PBO:0077331"}


id: PBO:0029279
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_protein_localization_to_mitotic_spindle_pole_body_during_telophase","termid":"PBO:0029279"}


id: GO:0015772
data:
  {"annotated_genes":["SJAG_03960"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[91333],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0106081"},{"annotations":[91334],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0106082"}]},"cv_name":"biological_process","definition":"The directed movement of oligosaccharides into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Oligosaccharides are molecules with between two and (about) 20 monosaccharide residues connected by glycosidic linkages.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"carbohydrate transport","termid":"GO:0008643"}],"gene_count":1,"genes_by_uniquename":{"SJAG_03960":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0051179"}],"interesting_parent_ids":["GO:0008150","GO:0006810","GO:0051179"],"is_obsolete":false,"name":"oligosaccharide transport","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0015772","terms_by_termid":{"GO:0106081":null,"GO:0106082":null}}


id: PBO:0075321
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"superoxide dismutase 1 pseudogene 3","termid":"PBO:0075321"}


id: GO:0030677
data:
  {"annotated_genes":["SJAG_01623","SJAG_03234","SJAG_01369","SJAG_04916","SJAG_06613","SJAG_02553","SJAG_04582","SJAG_00955","SJAG_00306","SJAG_03796"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[113634,97490,71498,108690,94973,86742,71367,99948,100158,110455],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0005655"}]},"cv_name":"cellular_component","definition":"A ribonucleoprotein complex that catalyzes cleavage of the leader sequence of precursor tRNAs (pre-tRNAs), generating the mature 5' end of tRNAs.","definition_xrefs":["GOC:mah","PMID:12045094"],"direct_ancestors":[{"relation_name":"is_a","term_name":"endoribonuclease complex","termid":"GO:1902555"},{"relation_name":"is_a","term_name":"ribonucleoprotein complex","termid":"GO:1990904"}],"gene_count":10,"genes_by_uniquename":{"SJAG_00306":null,"SJAG_00955":null,"SJAG_01369":null,"SJAG_01623":null,"SJAG_02553":null,"SJAG_03234":null,"SJAG_03796":null,"SJAG_04582":null,"SJAG_04916":null,"SJAG_06613":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0032991","GO:0005575"],"is_obsolete":false,"name":"ribonuclease P complex","references_by_uniquename":{"GO_REF:0000107":null,"PMID:21873635":null},"synonyms":[{"name":"RNase P complex","type":"exact"}],"termid":"GO:0030677","terms_by_termid":{"GO:0005655":null}}


id: FYPO:0000143
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A gene expression phenotype that affects the regulation of DNA-dependent transcription.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"gene expression regulation phenotype","termid":"FYPO:0000288"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0000002"],"is_obsolete":false,"name":"transcription regulation phenotype","synonyms":[{"name":"fission yeast transcription regulation phenotype","type":"exact"},{"name":"gene-specific transcription regulation phenotype","type":"related"},{"name":"transcriptional control phenotype","type":"broad"}],"termid":"FYPO:0000143"}


id: PBO:0039789
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"A-Raf proto-oncogene, serine/threonine kinase","termid":"PBO:0039789"}


id: PBO:0086620
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm and colocalizes in a punctate pattern with the early golgi/COPI vesicles; YOL107W is not an essential protein","termid":"PBO:0086620"}


id: PBO:0078874
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transient receptor potential cation channel subfamily M member 8","termid":"PBO:0078874"}


id: PBO:0070732
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L10a pseudogene 2","termid":"PBO:0070732"}


id: PBO:0085875
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein of unknown function; identified by expression profiling and mass spectrometry","termid":"PBO:0085875"}


id: PBO:0073682
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sirtuin 4","termid":"PBO:0073682"}


id: PBO:0052749
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"keratin 18 pseudogene 41","termid":"PBO:0052749"}


id: FYPO:0004870
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell cycle checkpoint phenotype in which the duration of mitotic cell cycle arrest or delay due to regulation by the mitotic G2 DNA damage checkpoint is shorter than normal. The DNA replication checkpoint normally prevents the initiation of mitosis until DNA replication is complete.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal mitotic G2 DNA damage checkpoint","termid":"FYPO:0004373"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000298"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0001985","FYPO:0001320","FYPO:0000631","FYPO:0000002","FYPO:0000298"],"is_obsolete":false,"name":"decreased duration of mitotic G2 DNA damage checkpoint","synonyms":[{"name":"decreased duration of G2 DNA damage checkpoint during mitotic cell cycle","type":"exact"},{"name":"decreased duration of mitotic G2 DNA damage checkpoint activation","type":"exact"},{"name":"decreased duration of mitotic G2 DNA damage checkpoint during vegetative growth","type":"exact"},{"name":"decreased duration of mitotic cell cycle G2/M transition DNA damage checkpoint","type":"exact"},{"name":"reduced duration of mitotic G2 DNA damage checkpoint","type":"exact"}],"termid":"FYPO:0004870"}


id: PBO:0065888
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RAB35 antisense RNA 1","termid":"PBO:0065888"}


id: SO:0000049
data:
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id: PBO:0038671
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"acyl-CoA synthetase long chain family member 5","termid":"PBO:0038671"}


id: GO:0005783
data:
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id: GO:0015165
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id: GO:0046958
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id: FYPO:0003883
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id: GO:1902349
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id: PBO:0091140
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id: FYPO:0003382
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id: FYPO:0004386
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id: PBO:0074261
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id: PBO:0087314
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id: PBO:0041414
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id: GO:0031672
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id: PR:P87050
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id: FYPO:0001110
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A phenotype in which a spore germinates to produce a cell of normal morphology (i.e. size, shape, and structure) that undergoes two or more rounds of cell division, and then dies.","definition_xrefs":["PomBase:al","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"inviable after spore germination, multiple cell divisions","termid":"FYPO:0002430"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000004"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0000004","FYPO:0000002"],"is_obsolete":false,"name":"inviable after spore germination, multiple cell divisions, normal morphology","synonyms":[{"name":"inviable following spore germination, multiple cell divisions, normal morphology","type":"exact"},{"name":"inviable germinated spore, multiple cell divisions, normal morphology","type":"exact"},{"name":"lethal after spore germination, multiple cell divisions, normal morphology","type":"exact"}],"termid":"FYPO:0001110"}


id: GO:0006786
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of heme c, a derivative of heme found in cytochromes c, b4, and f.","definition_xrefs":["GOC:curators","PubChem_Compound:122208"],"direct_ancestors":[{"relation_name":"is_a","term_name":"heme biosynthetic process","termid":"GO:0006783"},{"relation_name":"is_a","term_name":"heme C metabolic process","termid":"GO:0046162"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0033013"}],"interesting_parent_ids":["GO:0008150","GO:0033013"],"is_obsolete":false,"name":"heme C biosynthetic process","synonyms":[{"name":"haem C biosynthesis","type":"exact"},{"name":"haem C biosynthetic process","type":"exact"},{"name":"heme C anabolism","type":"exact"},{"name":"heme C biosynthesis","type":"exact"},{"name":"heme C formation","type":"exact"},{"name":"heme C synthesis","type":"exact"}],"termid":"GO:0006786"}


id: GO:0010284
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: lariciresinol + NADPH + H+ = secoisolariciresinol + NADP+.","definition_xrefs":["PMID:10066819","PMID:7592828"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor","termid":"GO:0016628"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016491","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"lariciresinol reductase activity","secondary_identifiers":["MetaCyc:RXN-8679","MetaCyc:RXN-8684"],"termid":"GO:0010284"}


id: GO:1990134
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"An apoptotic process in a palatal shelf epithelial cell that contributes to the shaping of the palatal shelf.","definition_xrefs":["PMID:16607638","GOC:mtg_apoptosis","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"apoptotic process involved in morphogenesis","termid":"GO:0060561"},{"relation_name":"is_a","term_name":"epithelial cell apoptotic process","termid":"GO:1904019"},{"relation_name":"part_of","term_name":"secondary palate development","termid":"GO:0062009"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"epithelial cell apoptotic process involved in palatal shelf morphogenesis","termid":"GO:1990134"}


id: PBO:0039400
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ANAPC1 pseudogene 5","termid":"PBO:0039400"}


id: PBO:0017987
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Haemolysin-III family plasma membrane receptor implicated in zinc ion homeostasis Izh2 (predicted)","termid":"PBO:0017987"}


id: PATO:0002172
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A shape quality inhering in a bearer by virtue of the bearer's being split along the radial axis.","definition_xrefs":["PATOC:GVG"],"direct_ancestors":[{"relation_name":"is_a","term_name":"split","termid":"PATO:0001786"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"split radially","termid":"PATO:0002172"}


id: PBO:0016935
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sSchizosaccharomyces pombe specific protein Mug114","termid":"PBO:0016935"}


id: PBO:0072335
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein S26 pseudogene 21","termid":"PBO:0072335"}


id: GO:0019923
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The covalent linking of the alpha-1-microglobulin chromophore to the protein; the structure of the chromophore is not known. It is probably heterogeneous and involving two cysteines in thioether bonds.","definition_xrefs":["RESID:AA0224"],"gene_count":0,"genotype_count":0,"name":"obsolete alpha-1-microglobulin-chromophore linkage (obsolete GO:0019923)","termid":"GO:0019923"}


id: FYPO:0001714
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the import of malate into the cell occurs to a lower extent than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal malate import","termid":"FYPO:0001713"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000138","FYPO:0001320","FYPO:0000002","FYPO:0005447"],"is_obsolete":false,"name":"decreased malate import","synonyms":[{"name":"decreased malate import across plasma membrane","type":"exact"},{"name":"decreased malate import during mitotic cell cycle","type":"related"},{"name":"decreased malate import during vegetative growth","type":"exact"},{"name":"decreased malate import into cell","type":"exact"},{"name":"decreased malate uptake","type":"exact"},{"name":"decreased malic acid import","type":"related"},{"name":"reduced malate import","type":"exact"}],"termid":"FYPO:0001714"}


id: PBO:0005557
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"wtf element Wtf13","termid":"PBO:0005557"}


id: PBO:0088887
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial membrane protein,TMEM14 superfamily member Aim19","termid":"PBO:0088887"}


id: PBO:0091797
data:
  {"annotation_feature_type":"gene","cv_name":"warning","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"yeast hsp78 and hsp104 are related to human CLBP at the C-term but have different N-terminal doamins possibly due to some rearrangement in the metazoan lineage","termid":"PBO:0091797"}


id: GO:0006948
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process of syncytia-forming cell-cell fusion, caused by a virus.","definition_xrefs":["ISBN:0781718325"],"direct_ancestors":[{"relation_name":"is_a","term_name":"modulation by virus of host cellular process","termid":"GO:0019054"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"induction by virus of host cell-cell fusion","synonyms":[{"name":"induction by virus of cell-cell fusion in host","type":"exact"},{"name":"viral-induced cell-cell fusion","type":"exact"},{"name":"viral-induced host cell-cell fusion","type":"exact"},{"name":"viral-induced membrane fusion","type":"narrow"}],"termid":"GO:0006948"}


id: PBO:0004916
data:
  {"annotation_feature_type":"gene","cv_name":"name_description","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"O-Glycoside Mannosyltransferase","termid":"PBO:0004916"}


id: FYPO:0004336
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to the mitochondrion is abnormal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal protein localization during vegetative growth","termid":"FYPO:0000443"},{"relation_name":"is_a","term_name":"abnormal cellular process during vegetative growth","termid":"FYPO:0001362"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0000138","FYPO:0000002","FYPO:0001985","FYPO:0001320","FYPO:0005447"],"is_obsolete":false,"name":"abnormal protein localization to mitochondrion","synonyms":[{"name":"abnormal protein localisation to mitochondrion","type":"exact"},{"name":"abnormal protein localization to mitochondria","type":"exact"},{"name":"abnormal protein localization to mitochondrion during mitotic cell cycle","type":"related"},{"name":"abnormal protein localization to mitochondrion during vegetative growth","type":"exact"}],"termid":"FYPO:0004336"}


id: PBO:0089019
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nucleoporin, WD repeat Nup132","termid":"PBO:0089019"}


id: PBO:0000283
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"WD repeat protein Pfs2","termid":"PBO:0000283"}


id: GO:0061867
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The mitotic spindle organization process by which a mitotic spindle becomes asymmetric either in position or structure.","definition_xrefs":["PMID:26659188"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mitotic spindle organization","termid":"GO:0007052"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0007049"},{"rel_name":"is_a","termid":"GO:0007010"},{"rel_name":"is_a","termid":"GO:0000226"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0007049","GO:0008150","GO:0007010","GO:0000226"],"is_obsolete":false,"name":"establishment of mitotic spindle asymmetry","termid":"GO:0061867"}


id: GO:1901700
data:
  {"annotated_genes":["SJAG_01754","SJAG_06611","SJAG_01699","SJAG_04403","SJAG_01858","SJAG_02960","SJAG_03081","SJAG_02515","SJAG_04788","SJAG_03653","SJAG_00574","SJAG_00668","SJAG_01254","SJAG_02010","SJAG_01734","SJAG_04399","SJAG_04312","SJAG_05256","SJAG_01216","SJAG_01199","SJAG_04026","SJAG_04632","SJAG_01457","SJAG_03032","SJAG_01162","SJAG_00141","SJAG_02444","SJAG_04823","SJAG_03303","SJAG_00472","SJAG_04953","SJAG_05181"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[89816,97292,101267,111694,102202,101850,104321,110669,104821],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0010619"},{"annotations":[107947],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0110095"},{"annotations":[113338,95476,104146,100409,112465,90761],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0061692"},{"annotations":[100412],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0140041"},{"annotations":[76559],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0071244"},{"annotations":[100589],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0036245"},{"annotations":[77050,91099],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0046294"},{"annotations":[85118,94776,57890,105377,88737,84707,105422,69119,95633],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0019430"},{"annotations":[91277,89153],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0097466"}]},"cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an oxygen-containing compound stimulus.","definition_xrefs":["GOC:pr","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to chemical","termid":"GO:0042221"}],"gene_count":32,"genes_by_uniquename":{"SJAG_00141":null,"SJAG_00472":null,"SJAG_00574":null,"SJAG_00668":null,"SJAG_01162":null,"SJAG_01199":null,"SJAG_01216":null,"SJAG_01254":null,"SJAG_01457":null,"SJAG_01699":null,"SJAG_01734":null,"SJAG_01754":null,"SJAG_01858":null,"SJAG_02010":null,"SJAG_02444":null,"SJAG_02515":null,"SJAG_02960":null,"SJAG_03032":null,"SJAG_03081":null,"SJAG_03303":null,"SJAG_03653":null,"SJAG_04026":null,"SJAG_04312":null,"SJAG_04399":null,"SJAG_04403":null,"SJAG_04632":null,"SJAG_04788":null,"SJAG_04823":null,"SJAG_04953":null,"SJAG_05181":null,"SJAG_05256":null,"SJAG_06611":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"response to oxygen-containing compound","references_by_uniquename":{"GO_REF:0000104":null,"GO_REF:0000107":null,"GO_REF:0000108":null,"PMID:21873635":null},"synonyms":[{"name":"response to oxygen molecular entity","type":"exact"}],"termid":"GO:1901700","terms_by_termid":{"GO:0010619":null,"GO:0019430":null,"GO:0036245":null,"GO:0046294":null,"GO:0061692":null,"GO:0071244":null,"GO:0097466":null,"GO:0110095":null,"GO:0140041":null}}


id: PBO:0058117
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 4420","termid":"PBO:0058117"}


id: GO:0086005
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"An action potential that occurs in a ventricular cardiac muscle cell.","definition_xrefs":["GOC:BHF","GOC:mtg_cardiac_conduct_nov11"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cardiac muscle cell action potential involved in contraction","termid":"GO:0086002"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"ventricular cardiac muscle cell action potential","termid":"GO:0086005"}


id: PBO:0084074
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"GTP-binding protein; regulates nitrogen starvation response, sporulation, and filamentous growth; farnesylation and palmitoylation required for activity and localization to plasma membrane; activated by increased levels of glycolysis intermediate fructose-1,6-bisphosphate; homolog of mammalian Ras proto-oncogenes; RAS2 has a paralog, RAS1, that arose from the whole genome duplication","termid":"PBO:0084074"}


id: PBO:0060394
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitotic spindle organizing protein 2B","termid":"PBO:0060394"}


id: PBO:0003620
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"peroxisomal ubiquitin-protein ligase E3 (predicted)","termid":"PBO:0003620"}


id: GO:0061823
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A ring-like structure observed at the base of the ciliary cap of insect spermatids. This structure may anchor the axoneme to the ciliary cap membrane and/or act as a diffusion barrier, proposed to be analogous to the annulus of mammalian sperm flagellum.","definition_xrefs":["PMID:4903810","PMID:25447994"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular anatomical entity","termid":"GO:0110165"},{"relation_name":"part_of","term_name":"cilium","termid":"GO:0005929"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"ring centriole","termid":"GO:0061823"}


id: GO:0180030
data:
  {"annotated_genes":["SJAG_02321","SJAG_01148","SJAG_00244","SJAG_03409"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[71231],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0033857"},{"annotations":[71227,113854],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0000829"},{"annotations":[110226],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0052723"},{"annotations":[74778,71434],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0000828"},{"annotations":[74338],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0035299"},{"annotations":[74777],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0000824"},{"annotations":[113856],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0000827"},{"annotations":[74779],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0008440"},{"annotations":[94312],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0000823"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: inositol phosphate + ATP = inositol phosphate + ADP.","definition_xrefs":["PMID:35536002"],"direct_ancestors":[{"relation_name":"is_a","term_name":"kinase activity","termid":"GO:0016301"}],"gene_count":4,"genes_by_uniquename":{"SJAG_00244":null,"SJAG_01148":null,"SJAG_02321":null,"SJAG_03409":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016301"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016740","GO:0016301","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"inositol phosphate kinase activity","references_by_uniquename":{"GO_REF:0000107":null,"PMID:21873635":null},"termid":"GO:0180030","terms_by_termid":{"GO:0000823":null,"GO:0000824":null,"GO:0000827":null,"GO:0000828":null,"GO:0000829":null,"GO:0008440":null,"GO:0033857":null,"GO:0035299":null,"GO:0052723":null}}


id: GO:0032328
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The directed movement of alanine, 2-aminopropanoic acid, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"neutral amino acid transport","termid":"GO:0015804"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0051179"}],"interesting_parent_ids":["GO:0051179","GO:0008150","GO:0006810"],"is_obsolete":false,"name":"alanine transport","termid":"GO:0032328"}


id: PBO:0084818
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Mitochondrial protein of unknown function; similar to Ups1p and Ups2p which are involved in regulation of mitochondrial cardiolipin and phosphatidylethanolamine levels; null is viable but interacts synthetically with ups1 and ups2 mutations; UPS3 has a paralog, UPS2, that arose from the whole genome duplication","termid":"PBO:0084818"}


id: PBO:0078415
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-Gly (anticodon GCC) 1-1","termid":"PBO:0078415"}


id: GO:0046093
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of deoxycytidine, 2-deoxyribosylcytosine, one of the four major nucleosides of DNA.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"deoxycytidine metabolic process","termid":"GO:0046092"},{"relation_name":"is_a","term_name":"pyrimidine deoxyribonucleoside biosynthetic process","termid":"GO:0046126"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0055086"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0055086","GO:0008150","GO:0044281"],"is_obsolete":false,"name":"deoxycytidine biosynthetic process","synonyms":[{"name":"deoxycytidine anabolism","type":"exact"},{"name":"deoxycytidine biosynthesis","type":"exact"},{"name":"deoxycytidine formation","type":"exact"},{"name":"deoxycytidine synthesis","type":"exact"}],"termid":"GO:0046093"}


id: GO:1900588
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving violaceol I.","definition_xrefs":["GOC:TermGenie","GOC:di"],"direct_ancestors":[{"relation_name":"is_a","term_name":"catechol-containing compound metabolic process","termid":"GO:0009712"},{"relation_name":"is_a","term_name":"ether metabolic process","termid":"GO:0018904"},{"relation_name":"is_a","term_name":"secondary metabolic process","termid":"GO:0019748"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0019748"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0044281","GO:0019748","GO:0008150"],"is_obsolete":false,"name":"violaceol I metabolic process","synonyms":[{"name":"violaceol I metabolism","type":"exact"}],"termid":"GO:1900588"}


id: PBO:0087804
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Tail-anchored type II integral peroxisomal membrane protein; required for peroxisome biogenesis; cells lacking Pex15p mislocalize peroxisomal matrix proteins to cytosol; overexpression results in impaired peroxisome assembly","termid":"PBO:0087804"}


id: GO:0021723
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of the medullary reticular formation over time, from its formation to the mature structure. The medullary reticular formation is a series of brain nuclei located in the medulla oblongata.","definition_xrefs":["GOC:curators","GOC:dph","GO_REF:0000021","GOC:dgh","GOC:cjm","GOC:cls","GOC:jid","Wikipedia:Rhombencephalon"],"direct_ancestors":[{"relation_name":"is_a","term_name":"anatomical structure development","termid":"GO:0048856"},{"relation_name":"part_of","term_name":"medulla oblongata development","termid":"GO:0021550"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"medullary reticular formation development","synonyms":[{"name":"rhombencephalic reticular formation development","type":"broad"}],"termid":"GO:0021723"}


id: SO:0000760
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","gene_count":0,"genotype_count":0,"name":"OBSOLETE SO:0000760 YAC_clone (obsolete SO:0000760)","termid":"SO:0000760"}


id: PBO:0078659
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-Lys (anticodon CTT) 12-1","termid":"PBO:0078659"}


id: PR:Q8J1M8
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPAC1952.04c gene.","definition_xrefs":["UniProtKB:Q8J1M8","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"UPF0768 protein C1952.04c (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC1952.04c","synonyms":[{"name":"Spom972h-SPAC1952.04c","type":"exact"}],"termid":"PR:Q8J1M8"}


id: PBO:0004500
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"U4/U6 x U5 tri-snRNP complex Sm snRNP core protein Smg1","termid":"PBO:0004500"}


id: GO:0002411
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process of tolerance induction dependent on T cells which leads to immunological tolerance of a tumor.","definition_xrefs":["PMID:16730260","GOC:add","ISBN:0781735149"],"direct_ancestors":[{"relation_name":"is_a","term_name":"tolerance induction to tumor cell","termid":"GO:0002413"},{"relation_name":"is_a","term_name":"T cell mediated immune response to tumor cell","termid":"GO:0002424"},{"relation_name":"is_a","term_name":"peripheral T cell tolerance induction","termid":"GO:0002458"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"T cell tolerance induction to tumor cell","termid":"GO:0002411"}


id: GO:0071743
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A protein complex composed of two identical immunoglobulin heavy chains of the IgE isotype and two identical immunoglobulin light chains, held together by disulfide bonds, and present in the extracellular space, in mucosal areas or other tissues, or circulating in the blood or lymph.","definition_xrefs":["ISBN:0781765196","GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"immunoglobulin complex, circulating","termid":"GO:0042571"},{"relation_name":"is_a","term_name":"IgE immunoglobulin complex","termid":"GO:0071742"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005576"}],"interesting_parent_ids":["GO:0005576","GO:0005575","GO:0032991"],"is_obsolete":false,"name":"IgE immunoglobulin complex, circulating","synonyms":[{"name":"IgE antibody","type":"exact"}],"termid":"GO:0071743"}


id: PBO:0046238
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"elongin C pseudogene 32","termid":"PBO:0046238"}


id: GO:0015701
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The directed movement of bicarbonate into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.","definition_xrefs":["GOC:krc"],"direct_ancestors":[{"relation_name":"is_a","term_name":"organic anion transport","termid":"GO:0015711"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0051179","GO:0008150","GO:0006810"],"is_obsolete":false,"name":"bicarbonate transport","synonyms":[{"name":"hydrogencarbonate transport","type":"exact"}],"termid":"GO:0015701"}


id: PBO:0085506
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein component of the small (40S) ribosomal subunit; homologous to mammalian ribosomal protein S10, no bacterial homolog; RPS10A has a paralog, RPS10B, that arose from the whole genome duplication; mutations in the human homolog associated with Diamond-Blackfan anemia","termid":"PBO:0085506"}


id: GO:0042750
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process in which an organism enters and maintains a period of dormancy in which to pass the winter. It is characterized by narcosis and by sharp reduction in body temperature and metabolic activity and by a depression of vital signs.","definition_xrefs":["GOC:jl","PMID:1945046"],"direct_ancestors":[{"relation_name":"is_a","term_name":"dormancy process","termid":"GO:0022611"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"hibernation","secondary_identifiers":["Wikipedia:Hibernation"],"termid":"GO:0042750"}


id: PBO:0027569
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-inviable_after_spore_germination,_single_or_double_cell_division,_arrest_with_septated_mononucleate_cell","termid":"PBO:0027569"}


id: PBO:0079499
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"thioredoxin like 1 pseudogene 1","termid":"PBO:0079499"}


id: PBO:0088713
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"circularly permuted 1,3-beta-glucanase","termid":"PBO:0088713"}


id: GO:0044142
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that activates or increases the frequency, rate or extent of the symbiont's increase in size or mass on or near the cells or tissues of the host organism.","definition_xrefs":["GOC:pamgo_curators","GOC:jl"],"gene_count":0,"genotype_count":0,"name":"obsolete positive regulation of growth of symbiont on or near host surface (obsolete GO:0044142)","termid":"GO:0044142"}


id: GO:2000868
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of estrone secretion.","definition_xrefs":["GOC:sl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of steroid hormone secretion","termid":"GO:2000832"},{"relation_name":"is_a","term_name":"regulation of estrone secretion","termid":"GO:2000867"},{"relation_name":"negatively_regulates","term_name":"estrone secretion","termid":"GO:0035943"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0023052"},{"rel_name":"negatively_regulates","termid":"GO:0006810"},{"rel_name":"negatively_regulates","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0023052","GO:0008150","GO:0006810"],"is_obsolete":false,"name":"negative regulation of estrone secretion","synonyms":[{"name":"negative regulation of 3-hydroxy-1,3,5(10)-estratrien-17-one secretion","type":"exact"},{"name":"negative regulation of folliculin secretion","type":"exact"}],"termid":"GO:2000868"}


id: GO:0140777
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"A molecular function that involves direct binding to one of the subunits of a protein-containing complex, thus preventing an interaction with a factor that would promote dissociation of the complex.","definition_xrefs":["PMID:34040253"],"direct_ancestors":[{"relation_name":"is_a","term_name":"molecular_function","termid":"GO:0003674"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674"],"is_obsolete":false,"name":"protein-containing complex stabilizing activity","termid":"GO:0140777"}


id: FYECO:0000129
data:
  {"annotation_feature_type":"gene","cv_name":"fission_yeast_phenotype_condition","definition":"Any experimental condition where the pH of the medium or assay buffer is higher than the standard pombe growth medium of pH of ~5.6.","definition_xrefs":["PMID:10467002"],"direct_ancestors":[{"relation_name":"is_a","term_name":"grouping experimental environment","termid":"FYECO:0000132"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"high pH","secondary_identifiers":["FYECO:0000130"],"synonyms":[{"name":"pH 6.8","type":"narrow"}],"termid":"FYECO:0000129"}


id: PBO:0065110
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protein kinase C epsilon","termid":"PBO:0065110"}


id: PBO:0041159
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"basic transcription factor 3 pseudogene 14","termid":"PBO:0041159"}


id: GO:1900248
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of cytoplasmic translational elongation.","definition_xrefs":["GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of translational elongation","termid":"GO:0045900"},{"relation_name":"is_a","term_name":"regulation of cytoplasmic translational elongation","termid":"GO:1900247"},{"relation_name":"is_a","term_name":"negative regulation of cytoplasmic translation","termid":"GO:2000766"},{"relation_name":"negatively_regulates","term_name":"cytoplasmic translational elongation","termid":"GO:0002182"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0002181"},{"rel_name":"negatively_regulates","termid":"GO:0002181"},{"rel_name":"negatively_regulates","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0002181","GO:0008150","GO:0010467"],"is_obsolete":false,"name":"negative regulation of cytoplasmic translational elongation","synonyms":[{"name":"down regulation of cytoplasmic translational elongation","type":"exact"},{"name":"down-regulation of cytoplasmic translational elongation","type":"exact"},{"name":"downregulation of cytoplasmic translational elongation","type":"exact"},{"name":"inhibition of cytoplasmic translational elongation","type":"narrow"}],"termid":"GO:1900248"}


id: MOD:00948
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"modification from DeltaMass","definition_xrefs":["DeltaMass:0"],"direct_ancestors":[{"relation_name":"is_a","term_name":"DeltaMass","termid":"MOD:00947"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"5'-dephospho","termid":"MOD:00948"}


id: PBO:0041044
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"bromodomain containing 1","termid":"PBO:0041044"}


id: GO:0001658
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which the branching structure of the ureteric bud is generated and organized. The ureteric bud is an epithelial tube that grows out from the metanephric duct. The bud elongates and branches to give rise to the ureter and kidney collecting tubules.","definition_xrefs":["GOC:dph","PMID:16916378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"branching morphogenesis of an epithelial tube","termid":"GO:0048754"},{"relation_name":"part_of","term_name":"ureteric bud morphogenesis","termid":"GO:0060675"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"branching involved in ureteric bud morphogenesis","synonyms":[{"name":"ureteric bud branching","type":"exact"}],"termid":"GO:0001658"}


id: PBO:0075864
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SSX family pseudogene 4","termid":"PBO:0075864"}


id: GO:0010748
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that decreases the rate, frequency or extent of plasma membrane long-chain fatty acid transport. Plasma membrane long-chain fatty acid transport is the directed movement of long-chain fatty acids across the plasma membrane.","definition_xrefs":["GOC:BHF","GOC:dph","GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of long-chain fatty acid import across plasma membrane","termid":"GO:0010746"},{"relation_name":"is_a","term_name":"negative regulation of transmembrane transport","termid":"GO:0034763"},{"relation_name":"is_a","term_name":"negative regulation of long-chain fatty acid import into cell","termid":"GO:0140213"},{"relation_name":"negatively_regulates","term_name":"long-chain fatty acid import across plasma membrane","termid":"GO:0015911"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"negatively_regulates","termid":"GO:0055085"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"regulates","termid":"GO:0055085"},{"rel_name":"negatively_regulates","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0055085","GO:0006810","GO:0008150"],"is_obsolete":false,"name":"negative regulation of long-chain fatty acid import across plasma membrane","synonyms":[{"name":"negative regulation of plasma membrane long-chain fatty acid transport","type":"exact"}],"termid":"GO:0010748"}


id: PR:O94278
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- thi5 gene.","definition_xrefs":["UniProtKB:O94278","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"thiamine repressible genes regulatory protein thi5 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBP8B7.30c","synonyms":[{"name":"Spom972h-thi5","type":"exact"},{"name":"transcription factor ntf1 5 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:O94278"}


id: GO:0009462
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. A cytochrome in which the prosthetic group is a tetrapyrrolic chelate of iron in which the degree of conjugation of double bonds is less than in porphyrin. This definition would appear to include siroheme proteins (e.g. nitrite and sulfite reductases), but these are not cytochromes.","definition_xrefs":["GOC:kd","PMID:1655423"],"gene_count":0,"genotype_count":0,"name":"obsolete cytochrome d (obsolete GO:0009462)","synonyms":[{"name":"cytochrome d","type":"exact"}],"termid":"GO:0009462"}


id: PBO:0017664
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Schizosaccharomyces pombe specific protein Mug114","termid":"PBO:0017664"}


id: PBO:0058583
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 6716","termid":"PBO:0058583"}


id: PBO:0041362
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chromosome 4 open reading frame 3","termid":"PBO:0041362"}


id: GO:2000983
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of ATP citrate synthase activity.","definition_xrefs":["GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of transferase activity","termid":"GO:0051338"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of ATP citrate synthase activity","synonyms":[{"name":"regulation of ATP citrate (pro-S)-lyase activity","type":"exact"},{"name":"regulation of ATP-citrate (pro-S)-lyase activity","type":"exact"},{"name":"regulation of ATP-citrate (pro-S-)-lyase activity","type":"exact"},{"name":"regulation of ATP-citric lyase activity","type":"exact"},{"name":"regulation of ATP:citrate oxaloacetate-lyase ((pro-S)-CH(2)COO(-)->acetyl-CoA) (ATP- dephosphorylating) activity","type":"exact"},{"name":"regulation of ATP:citrate oxaloacetate-lyase [(pro-S)-CH2COO-rightacetyl-CoA] (ATP-dephosphorylating)","type":"related"},{"name":"regulation of acetyl-CoA:oxaloacetate C-acetyltransferase [(pro-S)-carboxymethyl-forming, ADP-phosphorylating]","type":"related"},{"name":"regulation of acetyl-CoA:oxaloacetate acetyltransferase (isomerizing; ADP- phosphorylating) activity","type":"exact"},{"name":"regulation of acetyl-CoA:oxaloacetate acetyltransferase (isomerizing; ADP-phosphorylating)","type":"exact"},{"name":"regulation of adenosine triphosphate citrate lyase activity","type":"exact"},{"name":"regulation of citrate cleavage enzyme activity","type":"related"},{"name":"regulation of citrate-ATP lyase activity","type":"exact"},{"name":"regulation of citric cleavage enzyme activity","type":"related"}],"termid":"GO:2000983"}


id: PBO:0057976
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 3691","termid":"PBO:0057976"}


id: PBO:0072036
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein S10 pseudogene 6","termid":"PBO:0072036"}


id: PBO:0040345
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ATP synthase membrane subunit f pseudogene 2","termid":"PBO:0040345"}


id: PBO:0051152
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"immunoglobulin heavy variable 3-32 (pseudogene)","termid":"PBO:0051152"}


id: PBO:0069330
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 589, pseudogene","termid":"PBO:0069330"}


id: PBO:0046585
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"endogenous retrovirus group K member 27","termid":"PBO:0046585"}


id: MOD:01134
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"modification from DeltaMass","definition_xrefs":["DeltaMass:306"],"direct_ancestors":[{"relation_name":"is_a","term_name":"DeltaMass","termid":"MOD:00947"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"fluorescein labelling of peptide N-terminal using NHS ester","termid":"MOD:01134"}


id: GO:1901803
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of 1,5-anhydro-D-fructose.","definition_xrefs":["GOC:TermGenie","UniPathway:UPA00738","GOC:yaf","MetaCyc:PWY-6992","PMID:15716041"],"direct_ancestors":[{"relation_name":"is_a","term_name":"heterocycle biosynthetic process","termid":"GO:0018130"},{"relation_name":"is_a","term_name":"ketone biosynthetic process","termid":"GO:0042181"},{"relation_name":"is_a","term_name":"polyol biosynthetic process","termid":"GO:0046173"},{"relation_name":"is_a","term_name":"monosaccharide biosynthetic process","termid":"GO:0046364"},{"relation_name":"is_a","term_name":"organic cyclic compound biosynthetic process","termid":"GO:1901362"},{"relation_name":"is_a","term_name":"ether biosynthetic process","termid":"GO:1901503"},{"relation_name":"is_a","term_name":"1,5-anhydro-D-fructose metabolic process","termid":"GO:1901801"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0005975"}],"interesting_parent_ids":["GO:0005975","GO:0044281","GO:0008150"],"is_obsolete":false,"name":"1,5-anhydro-D-fructose biosynthetic process","synonyms":[{"name":"1,5-anhydro-D-fructose anabolism","type":"exact"},{"name":"1,5-anhydro-D-fructose biosynthesis","type":"exact"},{"name":"1,5-anhydro-D-fructose formation","type":"exact"},{"name":"1,5-anhydro-D-fructose synthesis","type":"exact"}],"termid":"GO:1901803"}


id: GO:0043430
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: 2-decaprenyl-6-methoxy-1,4-benzoquinone + S-adenosyl-L-methionine = 2-decaprenyl-3-methyl-6-methoxy-1,4-benzoquinone + S-adenosyl-L-homocysteine.","definition_xrefs":["PMID:11583838","GOC:jl"],"gene_count":0,"genotype_count":0,"name":"obsolete 2-decaprenyl-6-methoxy-1,4-benzoquinone methyltransferase activity (obsolete GO:0043430)","synonyms":[{"name":"2-decaprenyl-6-methoxy-1,4-benzoquinone methylase activity","type":"exact"}],"termid":"GO:0043430"}


id: GO:0045296
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to cadherin, a type I membrane protein involved in cell adhesion.","definition_xrefs":["GOC:bf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell adhesion molecule binding","termid":"GO:0050839"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005515"},{"rel_name":"is_a","termid":"GO:0005488"}],"interesting_parent_ids":["GO:0005515","GO:0005488","GO:0003674"],"is_obsolete":false,"name":"cadherin binding","termid":"GO:0045296"}


id: GO:0018420
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The formation of isopeptide bonds by ligation of peptidyl-lysine and peptidyl-asparagine residues.","definition_xrefs":["RESID:AA0294"],"gene_count":0,"genotype_count":0,"name":"obsolete peptide cross-linking via N6-(L-isoaspartyl)-L-lysine (obsolete GO:0018420)","termid":"GO:0018420"}


id: PBO:0008894
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"60S ribosomal protein L4 (predicted)","termid":"PBO:0008894"}


id: GO:0010713
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that decreases the frequency, rate or extent of the chemical reactions and pathways resulting in the metabolism of collagen, any of a group of fibrous proteins of very high tensile strength that form the main component of connective tissue in animals.","definition_xrefs":["GOC:tb","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of metabolic process","termid":"GO:0009892"},{"relation_name":"is_a","term_name":"regulation of collagen metabolic process","termid":"GO:0010712"},{"relation_name":"negatively_regulates","term_name":"collagen metabolic process","termid":"GO:0032963"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of collagen metabolic process","termid":"GO:0010713"}


id: PBO:0066712
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RN7SK pseudogene 9","termid":"PBO:0066712"}


id: GO:0047561
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 3-hydroxyanthranilate + O2 = 6-imino-5-oxocyclohexa-1,3-dienecarboxylate + H2O2.","definition_xrefs":["EC:1.10.3.5","RHEA:17245"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor","termid":"GO:0016682"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003824","GO:0016491","GO:0003674"],"is_obsolete":false,"name":"3-hydroxyanthranilate oxidase activity","secondary_identifiers":["MetaCyc:3-HYDROXYANTHRANILATE-OXIDASE-RXN","KEGG_REACTION:R02666"],"synonyms":[{"name":"3-hydroxyanthranilate:oxygen oxidoreductase activity","type":"related"},{"name":"3-hydroxyanthranilic acid oxidase activity","type":"related"}],"termid":"GO:0047561"}


id: GO:0008265
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the sulfurylation of the desulfo form of molybdenum cofactor (MoCo), a cofactor required for the activity of some enzymes, such as aldehyde oxidase.","definition_xrefs":["GOC:mah","PMID:11549764"],"direct_ancestors":[{"relation_name":"is_a","term_name":"sulfurtransferase activity","termid":"GO:0016783"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016782"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016740"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016740","GO:0016782"],"is_obsolete":false,"name":"Mo-molybdopterin cofactor sulfurase activity","secondary_identifiers":["EC:2.8.1.9","Reactome:R-HSA-947499"],"synonyms":[{"name":"Mo-molybdopterin cofactor sulphurase activity","type":"exact"},{"name":"molybdopterin cofactor sulfurase activity","type":"exact"},{"name":"molybdopterin synthase sulfurylase activity","type":"exact"}],"termid":"GO:0008265"}


id: FYPO:0006180
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which microtubule polymerization, i.e. the addition of tubulin dimers, occurs to a greater extent than normal.","definition_xrefs":["GO:0046785","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal microtubule polymerization during vegetative growth","termid":"FYPO:0004614"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000054"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001320","FYPO:0001985","FYPO:0000054","FYPO:0005447"],"is_obsolete":false,"name":"increased microtubule polymerization","synonyms":[{"name":"increased microtubule growth","type":"exact"},{"name":"increased microtubule polymerisation","type":"exact"},{"name":"increased microtubule polymerization","type":"related"},{"name":"increased microtubule polymerization during mitotic cell cycle","type":"related"},{"name":"increased microtubule polymerization during vegetative growth","type":"exact"}],"termid":"FYPO:0006180"}


id: PBO:0068258
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 45S pre-ribosomal 5","termid":"PBO:0068258"}


id: PBO:0049613
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"H3 histone pseudogene 16","termid":"PBO:0049613"}


id: GO:0010405
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving a cell wall arabinogalactan II glycoprotein, which is composed of a group of core protein of highly varying length and domain complexity. These are O-glycosylated at one or more hydroxyproline residues by arabinogalactan (AG) type II groups, which consist of (1->3)-beta-galactan and (1->6)-beta-linked galactan chains connected to each other by (1->3,1->6)-linked branch points, O-3 and O-6 positions substituted with terminal arabinosyl residues. Also, rhamnose, fucose, glucuronic and galacturonic acid can be present in the glycan structures.","definition_xrefs":["GOC:tair_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell wall hydroxyproline-rich glycoprotein metabolic process","termid":"GO:0010404"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0071554"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0071554","GO:0008150"],"is_obsolete":false,"name":"arabinogalactan protein metabolic process","synonyms":[{"name":"arabinogalactan protein metabolism","type":"exact"}],"termid":"GO:0010405"}


id: GO:1904628
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a phorbol 13-acetate 12-myristate stimulus.","definition_xrefs":["GO_REF:0000071","PMID:2200903","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular response to lipid","termid":"GO:0071396"},{"relation_name":"is_a","term_name":"cellular response to alcohol","termid":"GO:0097306"},{"relation_name":"is_a","term_name":"cellular response to ketone","termid":"GO:1901655"},{"relation_name":"is_a","term_name":"response to phorbol 13-acetate 12-myristate","termid":"GO:1904627"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cellular response to phorbol 13-acetate 12-myristate","synonyms":[{"name":"cellular response to TPA","type":"exact"},{"name":"cellular response to phorbol 12-tetradecanoate 13-acetate","type":"exact"},{"name":"cellular response to response to PMA","type":"exact"},{"name":"cellular response to tetradecanoylphorbol acetate","type":"exact"}],"termid":"GO:1904628"}


id: GO:0009628
data:
  {"annotated_genes":["SJAG_01084","SJAG_01150","SJAG_00661","SJAG_02818","SJAG_04190","SJAG_00729","SJAG_00208","SJAG_04055","SJAG_00272","SJAG_02334","SJAG_01186","SJAG_04726","SJAG_00409","SJAG_02860","SJAG_04791","SJAG_04388","SJAG_01010","SJAG_04150","SJAG_02342","SJAG_01262","SJAG_00642","SJAG_03527","SJAG_00814","SJAG_03185","SJAG_02199","SJAG_05242","SJAG_04187","SJAG_04018","SJAG_00596","SJAG_03893","SJAG_04205","SJAG_02258","SJAG_04567","SJAG_02091","SJAG_02381","SJAG_02883","SJAG_04877","SJAG_01648","SJAG_02592","SJAG_04668","SJAG_00436","SJAG_03815","SJAG_02200","SJAG_03898","SJAG_05197","SJAG_00221","SJAG_00863","SJAG_02182"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[66547],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0009785"},{"annotations":[77759,99725],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0070370"},{"annotations":[88019],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0071474"},{"annotations":[114201,114200],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0071483"},{"annotations":[85214],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0071473"},{"annotations":[110637,100362,110638,105289,91259,105290],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0034605"},{"annotations":[112100,96687,105141,106954],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0071456"},{"annotations":[112187,87521,105615,91534,99930,89954,109652,98216,101856,111424],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0071470"},{"annotations":[95647],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0071472"},{"annotations":[86478],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0071502"},{"annotations":[103773],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0050982"},{"annotations":[90801,98250,104417,75978],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:1904161"},{"annotations":[76895],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0009314"},{"annotations":[92668,89565,99639,101306,108047,85281,89264,90632,70206,91581,83768,102341,107507,90836],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0070914"}]},"cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an abiotic (not derived from living organisms) stimulus.","definition_xrefs":["GOC:hb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to stimulus","termid":"GO:0050896"}],"gene_count":48,"genes_by_uniquename":{"SJAG_00208":null,"SJAG_00221":null,"SJAG_00272":null,"SJAG_00409":null,"SJAG_00436":null,"SJAG_00596":null,"SJAG_00642":null,"SJAG_00661":null,"SJAG_00729":null,"SJAG_00814":null,"SJAG_00863":null,"SJAG_01010":null,"SJAG_01084":null,"SJAG_01150":null,"SJAG_01186":null,"SJAG_01262":null,"SJAG_01648":null,"SJAG_02091":null,"SJAG_02182":null,"SJAG_02199":null,"SJAG_02200":null,"SJAG_02258":null,"SJAG_02334":null,"SJAG_02342":null,"SJAG_02381":null,"SJAG_02592":null,"SJAG_02818":null,"SJAG_02860":null,"SJAG_02883":null,"SJAG_03185":null,"SJAG_03527":null,"SJAG_03815":null,"SJAG_03893":null,"SJAG_03898":null,"SJAG_04018":null,"SJAG_04055":null,"SJAG_04150":null,"SJAG_04187":null,"SJAG_04190":null,"SJAG_04205":null,"SJAG_04388":null,"SJAG_04567":null,"SJAG_04668":null,"SJAG_04726":null,"SJAG_04791":null,"SJAG_04877":null,"SJAG_05197":null,"SJAG_05242":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"response to abiotic stimulus","references_by_uniquename":{"GO_REF:0000107":null,"GO_REF:0000108":null,"PMID:21873635":null,"PMID:23873862":null},"synonyms":[{"name":"response to abiotic stress","type":"narrow"}],"termid":"GO:0009628","terms_by_termid":{"GO:0009314":null,"GO:0009785":null,"GO:0034605":null,"GO:0050982":null,"GO:0070370":null,"GO:0070914":null,"GO:0071456":null,"GO:0071470":null,"GO:0071472":null,"GO:0071473":null,"GO:0071474":null,"GO:0071483":null,"GO:0071502":null,"GO:1904161":null}}


id: PBO:0029404
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_chromosome_morphology","termid":"PBO:0029404"}


id: PR:O94646
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- med8 gene.","definition_xrefs":["UniProtKB:O94646","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mediator of RNA polymerase II transcription subunit 8 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC21.04","synonyms":[{"name":"Spom972h-med8","type":"exact"},{"name":"cell separation protein sep15 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"mediator complex subunit 8 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:O94646"}


id: GO:0016816
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the hydrolysis of any non-peptide carbon-nitrogen bond in substances other than amides, amidines and nitriles.","definition_xrefs":["GOC:ai"],"gene_count":0,"genotype_count":0,"name":"obsolete hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in other compounds (obsolete GO:0016816)","synonyms":[{"name":"hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in other compounds","type":"exact"}],"termid":"GO:0016816"}


id: GO:0033904
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the endohydrolysis of 1,6-alpha-D-glucosidic linkages in dextran.","definition_xrefs":["EC:3.2.1.11"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hydrolase activity, hydrolyzing O-glycosyl compounds","termid":"GO:0004553"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016798"}],"interesting_parent_ids":["GO:0016787","GO:0003824","GO:0016798","GO:0003674"],"is_obsolete":false,"name":"dextranase activity","secondary_identifiers":["MetaCyc:3.2.1.11-RXN"],"synonyms":[{"name":"1,6-alpha-D-glucan 6-glucanohydrolase activity","type":"related"},{"name":"DL 2","type":"related"},{"name":"alpha-1,6-glucan-6-glucanohydrolase activity","type":"related"},{"name":"alpha-D-1,6-glucan-6-glucanohydrolase activity","type":"related"},{"name":"dextran hydrolase activity","type":"related"},{"name":"dextranase DL 2 activity","type":"narrow"},{"name":"endo-dextranase activity","type":"related"},{"name":"endodextranase activity","type":"related"}],"termid":"GO:0033904"}


id: GO:0004536
data:
  {"annotated_genes":["SJAG_01648","SJAG_02908","SJAG_01948","SJAG_02031","SJAG_05237","SJAG_04183","SJAG_02556","SJAG_03994","SJAG_02828","SJAG_01163","SJAG_02818","SJAG_01262","SJAG_03675","SJAG_04752","SJAG_02708","SJAG_01173","SJAG_04410","SJAG_02298","SJAG_05280","SJAG_01832","SJAG_05373","SJAG_00623","SJAG_01044"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[113803],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1990599"},{"annotations":[74575,74924],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0008296"},{"annotations":[73884],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0048257"},{"annotations":[101307],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1990043"},{"annotations":[99570],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1990601"},{"annotations":[84142],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0035312"},{"annotations":[76507,74770,77216,92670],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0017108"},{"annotations":[59322,77346,76508,90316,73878,77888],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0008821"},{"annotations":[110821],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0033699"},{"annotations":[72949,84291],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0008311"},{"annotations":[103106,92672],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0051908"},{"annotations":[96642],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0106332"},{"annotations":[84294,73671],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0008310"},{"annotations":[92674,72496],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0045145"},{"annotations":[72063,105321,106088,78069],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0000014"}]},"cv_name":"molecular_function","definition":"Catalysis of the hydrolysis of ester linkages within deoxyribonucleic acid.","definition_xrefs":["ISBN:0198547684","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nuclease activity","termid":"GO:0004518"},{"relation_name":"is_a","term_name":"catalytic activity, acting on DNA","termid":"GO:0140097"}],"gene_count":23,"genes_by_uniquename":{"SJAG_00623":null,"SJAG_01044":null,"SJAG_01163":null,"SJAG_01173":null,"SJAG_01262":null,"SJAG_01648":null,"SJAG_01832":null,"SJAG_01948":null,"SJAG_02031":null,"SJAG_02298":null,"SJAG_02556":null,"SJAG_02708":null,"SJAG_02818":null,"SJAG_02828":null,"SJAG_02908":null,"SJAG_03675":null,"SJAG_03994":null,"SJAG_04183":null,"SJAG_04410":null,"SJAG_04752":null,"SJAG_05237":null,"SJAG_05280":null,"SJAG_05373":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016788"},{"rel_name":"is_a","termid":"GO:0140097"},{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016787","GO:0003824","GO:0003674","GO:0140097","GO:0016788"],"is_obsolete":false,"name":"DNA nuclease activity","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000107":null,"PMID:21873635":null},"secondary_identifiers":["Reactome:R-HSA-5685994","Reactome:R-HSA-211247","GO:0004537","Reactome:R-HSA-6785986"],"synonyms":[{"name":"caspase-activated deoxyribonuclease activity","type":"narrow"},{"name":"deoxyribonuclease activity","type":"exact"}],"termid":"GO:0004536","terms_by_termid":{"GO:0000014":null,"GO:0008296":null,"GO:0008310":null,"GO:0008311":null,"GO:0008821":null,"GO:0017108":null,"GO:0033699":null,"GO:0035312":null,"GO:0045145":null,"GO:0048257":null,"GO:0051908":null,"GO:0106332":null,"GO:1990043":null,"GO:1990599":null,"GO:1990601":null}}


id: GO:0031982
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id: FYPO:0007643
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id: PBO:0039041
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id: GO:1901390
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id: PBO:0070870
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id: FYPO:0001101
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id: PBO:0060017
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id: GO:0032137
data:
  {"annotated_genes":["SJAG_02748","SJAG_02226"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[101439,111579],"is_not":false,"summary":null,"term":"GO:0032137"}]},"cv_name":"molecular_function","definition":"Binding to a double-stranded DNA region containing a G/T mispair.","definition_xrefs":["GOC:vk"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mismatched DNA binding","termid":"GO:0030983"}],"gene_count":2,"genes_by_uniquename":{"SJAG_02226":null,"SJAG_02748":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003677"},{"rel_name":"is_a","termid":"GO:0005488"}],"interesting_parent_ids":["GO:0003674","GO:0003677","GO:0005488"],"is_obsolete":false,"name":"guanine/thymine mispair binding","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"G/T mispair binding","type":"exact"},{"name":"T/G mispair binding","type":"exact"},{"name":"thymine/guanine mispair binding","type":"exact"}],"termid":"GO:0032137","terms_by_termid":{"GO:0032137":null}}


id: SO:0000917
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"An edit to insert a U.","definition_xrefs":["SO:ke"],"gene_count":0,"genotype_count":0,"name":"OBSOLETE SO:0000917 insert_U (obsolete SO:0000917)","synonyms":[{"name":"insert U","type":"exact"}],"termid":"SO:0000917"}


id: PBO:0046986
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"family with sequence similarity 86 member K, pseudogene","termid":"PBO:0046986"}


id: PBO:0084680
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Mitochondrial beta-keto-acyl synthase; possible role in fatty acid synthesis; required for mitochondrial respiration; human homolog OXSM can complement yeast cem1 null mutant","termid":"PBO:0084680"}


id: GO:0031880
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a type 3 somatostatin receptor.","definition_xrefs":["GOC:mah","GOC:nln"],"direct_ancestors":[{"relation_name":"is_a","term_name":"somatostatin receptor binding","termid":"GO:0031877"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005515"},{"rel_name":"is_a","termid":"GO:0005488"}],"interesting_parent_ids":["GO:0003674","GO:0005488","GO:0005515"],"is_obsolete":false,"name":"type 3 somatostatin receptor binding","synonyms":[{"name":"type 3 somatostatin receptor ligand","type":"narrow"}],"termid":"GO:0031880"}


id: PBO:0039238
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"albumin","termid":"PBO:0039238"}


id: FYPO:0001584
data:
  {"alleles_by_uniquename":{"SJAG_01143:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_01143","name":"mid1delta","uniquename":"SJAG_01143:allele-1"},"SJAG_02392:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_02392","name":"pom1delta","uniquename":"SJAG_02392:allele-1"},"SJAG_04280:allele-2":{"allele_type":"amino_acid_mutation","description":"T582G","gene_uniquename":"SJAG_04280","name":"wee1-as8","uniquename":"SJAG_04280:allele-2"}},"annotation_feature_type":"genotype","cv_annotations":{"multi_locus_phenotype":[{"annotations":[114396],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0005503"}],"single_locus_phenotype":[{"annotations":[114637,114390,114634,114635],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0005503"},{"annotations":[114636],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0002870"}]},"cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to the cell tip is abnormal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal protein localization during vegetative growth","termid":"FYPO:0000443"},{"relation_name":"is_a","term_name":"abnormal cellular process during vegetative growth","termid":"FYPO:0001362"},{"relation_name":"is_a","term_name":"abnormal protein localization to cell tip","termid":"FYPO:0005987"}],"gene_count":3,"genes_by_uniquename":{"SJAG_00030":null,"SJAG_01143":null,"SJAG_01794":null,"SJAG_02392":null,"SJAG_03581":null,"SJAG_03596":null,"SJAG_04280":null,"SJAG_04522":null},"genotype_count":3,"genotypes_by_uniquename":{"mid1delta__pom1delta":{"display_name":"mid1delta pom1delta","display_uniquename":"mid1delta__pom1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01143:allele-1","expression":"Null"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_02392:allele-1","expression":"Null"}]}]},"pom1delta":{"display_name":"pom1delta","display_uniquename":"pom1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_02392:allele-1","expression":"Null"}]}]},"wee1-as8-T582G-amino_acid_mutation-expression-not_assayed_or_wild_type":{"display_name":"wee1-as8(T582G aa)","display_uniquename":"wee1-as8-T582G-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04280:allele-2","expression":"Not assayed or wild type"}]}]}},"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0000002","FYPO:0000138","FYPO:0005447","FYPO:0001985"],"is_obsolete":false,"multi_locus_annotated_genes":["SJAG_02392","SJAG_01143"],"name":"abnormal protein localization to cell tip during vegetative growth","references_by_uniquename":{"PMID:25866389":null,"PMID:30664646":null},"single_locus_annotated_genes":["SJAG_02392","SJAG_04280"],"single_locus_genotype_uniquenames":["pom1delta","wee1-as8-T582G-amino_acid_mutation-expression-not_assayed_or_wild_type"],"synonyms":[{"name":"abnormal protein localisation to cell tip during vegetative growth","type":"exact"},{"name":"abnormal protein localization to cell end during vegetative growth","type":"exact"},{"name":"abnormal protein localization to cell tip during mitotic cell cycle","type":"related"}],"termid":"FYPO:0001584","terms_by_termid":{"FYECO:0000005":null,"FYECO:0000137":null,"FYECO:0000338":null,"FYPO:0002870":null,"FYPO:0005503":null}}


id: PBO:0026807
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_protein_localization_to_linear_element","termid":"PBO:0026807"}


id: PBO:0084980
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NADH-dependent aldehyde reductase; reduces many aldehyde compounds including glycolaldehyde, formaldehyde and furfural; transcription unregulated by furfural, 5-hydroxymethylfurfural (HMF) and the mycotoxin patulin; expression increased by multidrug resistance transcription factors Yrm1p and Yrr1p; member of atypical subgroup 7 of the short-chain dehydrogenase/reductase (SDR) family; localizes to the cytoplasm; SWAT-GFP and mCherry fusion proteins localize to the ER and vacuole respectively","termid":"PBO:0084980"}


id: FYPO:0003391
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which occurrence of ubiquinone binding by a gene product (usually a protein) in a mutant is abnormal. The affected gene product may be encoded by the mutated gene, or by a different gene.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal molecular function","termid":"FYPO:0000707"},{"relation_name":"is_a","term_name":"binding phenotype","termid":"FYPO:0001092"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0000707"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0000652","FYPO:0001985","FYPO:0000707"],"is_obsolete":false,"name":"abnormal ubiquinone binding","synonyms":[{"name":"abnormal coenzyme Q binding","type":"exact"}],"termid":"FYPO:0003391"}


id: SO:1001277
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"The recoding stimulatory signal located downstream of the recoding site.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"recoding_stimulatory_region","termid":"SO:1001268"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"three_prime_recoding_site","synonyms":[{"name":"three prime recoding site","type":"exact"}],"termid":"SO:1001277"}


id: PBO:0065076
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"prickle planar cell polarity protein 3","termid":"PBO:0065076"}


id: GO:0060904
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the rate, frequency or extent of the protein folding process that takes place in the endoplasmic reticulum (ER). Secreted, plasma membrane and organelle proteins are folded in the ER, assisted by chaperones and foldases (protein disulphide isomerases), and additional factors required for optimal folding (ATP, Ca2+ and an oxidizing environment to allow disulfide bond formation).","definition_xrefs":["GOC:dph","GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of protein folding","termid":"GO:1903332"},{"relation_name":"regulates","term_name":"protein folding in endoplasmic reticulum","termid":"GO:0034975"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0006457"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0006457"],"is_obsolete":false,"name":"regulation of protein folding in endoplasmic reticulum","termid":"GO:0060904"}


id: PR:O14138
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPAC25A8.03c gene.","definition_xrefs":["PRO:DNx","UniProtKB:O14138"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NADH dehydrogenase [ubiquinone] complex I, assembly factor 7 homolog (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC25A8.03c","synonyms":[{"name":"Spom972h-SPAC25A8.03c","type":"exact"},{"name":"protein midA homolog (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:O14138"}


id: SO:0001161
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A sequence element characteristic of some RNA polymerase II promoters, usually located between -60 and -45 relative to the TSS. Consensus sequence is MKSYGGCARCGSYSS. Tends to co-occur with DMv3 (SO:0001160). Tends to not occur with DPE motif (SO:0000015) or MTE (SO:0001162).","definition_xrefs":["PMID:12537576:16827941"],"direct_ancestors":[{"relation_name":"is_a","term_name":"promoter_element","termid":"SO:0001659"},{"relation_name":"part_of","term_name":"RNApol_II_promoter","termid":"SO:0000170"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DMv2_motif","synonyms":[{"name":"DMv2","type":"exact"},{"name":"DMv2 motif","type":"exact"},{"name":"MKSYGGCARCGSYSS","type":"narrow"},{"name":"directional motif v2","type":"exact"},{"name":"promoter motif 8","type":"exact"}],"termid":"SO:0001161"}


id: PBO:0005286
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"rRNA processing protein Ipi1 (predicted)","termid":"PBO:0005286"}


id: PATO:0000034
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0000034 protein concentration (obsolete PATO:0000034)","termid":"PATO:0000034"}


id: PBO:0071526
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L34 pseudogene 29","termid":"PBO:0071526"}


id: MOD:02060
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that contains an D-asparagine residue crosslinked to one or more amino acid residues.","definition_xrefs":["PubMed:18688235"],"direct_ancestors":[{"relation_name":"is_a","term_name":"D-asparagine","termid":"MOD:00203"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"crosslinked D-asparagine residue","synonyms":[{"name":"XlnkDAsn","type":"exact"}],"termid":"MOD:02060"}


id: PBO:0067974
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 5S ribosomal pseudogene 276","termid":"PBO:0067974"}


id: PBO:0080672
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"wolframin ER transmembrane glycoprotein","termid":"PBO:0080672"}


id: GO:1990437
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The posttranscriptional addition of a methyl group to the 2' oxygen atom of a nucleotide residue in an snRNA molecule.","definition_xrefs":["PMID:11842100","PMID:9844635"],"direct_ancestors":[{"relation_name":"is_a","term_name":"snRNA methylation","termid":"GO:0106349"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016073"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0016073","GO:0008150"],"is_obsolete":false,"name":"snRNA 2'-O-methylation","termid":"GO:1990437"}


id: GO:1900167
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of glial cell-derived neurotrophic factor production.","definition_xrefs":["GOC:TermGenie","GOC:yaf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of cytokine production","termid":"GO:0001818"},{"relation_name":"is_a","term_name":"regulation of glial cell-derived neurotrophic factor production","termid":"GO:1900166"},{"relation_name":"negatively_regulates","term_name":"glial cell-derived neurotrophic factor production","termid":"GO:0044467"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0010467"},{"rel_name":"negatively_regulates","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0010467","GO:0008150"],"is_obsolete":false,"name":"negative regulation of glial cell-derived neurotrophic factor production","synonyms":[{"name":"inhibition of GDNF secretion","type":"narrow"},{"name":"inhibition of glial cell line-derived neurotrophic factor secretion","type":"narrow"},{"name":"negative regulation of GDNF secretion","type":"exact"},{"name":"negative regulation of glial cell line-derived neurotrophic factor secretion","type":"related"},{"name":"negative regulation of glial cell-derived neurotrophic factor secretion","type":"narrow"}],"termid":"GO:1900167"}


id: GO:0060908
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The maintenance of the number of copies of extrachromosomal plasmid DNA.","definition_xrefs":["GOC:dph","GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"plasmid maintenance","termid":"GO:0006276"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"plasmid copy number maintenance","termid":"GO:0060908"}


id: GO:0038023
data:
  {"annotated_genes":["SJAG_01345","SJAG_02080","SJAG_01978","SJAG_02258","SJAG_02847","SJAG_02823","SJAG_01699","SJAG_02860"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[72678,73865,100899],"is_not":false,"summary":null,"term":"GO:0038023"},{"annotations":[114199],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0009882"},{"annotations":[110671],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1990576"},{"annotations":[92591],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004932"},{"annotations":[83898],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0036320"},{"annotations":[103776],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0140897"}]},"cv_name":"molecular_function","definition":"Receiving a signal and transmitting it in the cell to initiate a change in cell activity. A signal is a physical entity or change in state that is used to transfer information in order to trigger a response.","definition_xrefs":["GOC:signaling","GOC:bf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"molecular transducer activity","termid":"GO:0060089"}],"gene_count":8,"genes_by_uniquename":{"SJAG_01345":null,"SJAG_01699":null,"SJAG_01978":null,"SJAG_02080":null,"SJAG_02258":null,"SJAG_02823":null,"SJAG_02847":null,"SJAG_02860":null},"genotype_count":0,"in_subsets":["mf_goslim_japonicus"],"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674"],"is_obsolete":false,"name":"signaling receptor activity","references_by_uniquename":{"GO_REF:0000107":null,"PMID:21873635":null,"PMID:23873862":null},"secondary_identifiers":["GO:0004872","GO:0019041"],"synonyms":[{"name":"receptor activity","type":"broad"},{"name":"receptor activity involved in signal transduction","type":"exact"},{"name":"signalling receptor activity","type":"exact"}],"termid":"GO:0038023","terms_by_termid":{"GO:0004932":null,"GO:0009882":null,"GO:0036320":null,"GO:0038023":null,"GO:0140897":null,"GO:1990576":null}}


id: PBO:0058711
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 6839","termid":"PBO:0058711"}


id: PBO:0036231
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cell surface glycoprotein, flocculin Pfl8","termid":"PBO:0036231"}


id: PBO:0053949
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1254","termid":"PBO:0053949"}


id: PBO:0110262
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mRNA cleavage factor and polyadenylation specificity factor complex RNA-binding protein Rna15","termid":"PBO:0110262"}


id: GO:0043918
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: S-adenosylmethioninamine + cadaverine = 5'-methylthioadenosine + N-(3-aminopropyl)cadaverine.","definition_xrefs":["GOC:jl","PMID:17545282"],"direct_ancestors":[{"relation_name":"is_a","term_name":"transferase activity, transferring alkyl or aryl (other than methyl) groups","termid":"GO:0016765"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016765"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016740"}],"interesting_parent_ids":["GO:0016765","GO:0003824","GO:0003674","GO:0016740"],"is_obsolete":false,"name":"cadaverine aminopropyltransferase activity","secondary_identifiers":["EC:2.5.1.104"],"synonyms":[{"name":"cadaverine aminopropyl transferase activity","type":"exact"}],"termid":"GO:0043918"}


id: PBO:0045045
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dickkopf like acrosomal protein 1","termid":"PBO:0045045"}


id: GO:0099545
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Cell-cell signaling between presynapse and postsynapse mediated by a trans-synaptic protein complex.","definition_xrefs":["GOC:dos"],"direct_ancestors":[{"relation_name":"is_a","term_name":"trans-synaptic signaling","termid":"GO:0099537"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"trans-synaptic signaling by trans-synaptic complex","termid":"GO:0099545"}


id: GO:0061565
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process of introducing a phosphate group into dAMP, deoxyadenosine monophosphate, to produce dADP. Addition of two phosphate groups produces dATP.","definition_xrefs":["GOC:dph","PMID:23416111"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nucleoside monophosphate phosphorylation","termid":"GO:0046940"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0055086"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0008150","GO:0055086","GO:0044281"],"is_obsolete":false,"name":"dAMP phosphorylation","termid":"GO:0061565"}


id: PBO:0080300
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"vomeronasal 1 receptor 64 pseudogene","termid":"PBO:0080300"}


id: PBO:0030617
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-sensitive_to_Calcofluor_White","termid":"PBO:0030617"}


id: FYPO:0009050
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"An increased chemical resistance phenotype observed in the vegetative growth phase of the life cycle in which cells grow in the presence of higher concentrations of hydroxyurea and methyl methanesulfonate than normal.","definition_xrefs":["PomBase:mlr"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased resistance to chemical during vegetative growth","termid":"FYPO:0000126"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0002682"},{"rel_name":"is_a","termid":"FYPO:0000139"},{"rel_name":"is_a","termid":"FYPO:0000003"}],"interesting_parent_ids":["FYPO:0000139","FYPO:0000003","FYPO:0002682","FYPO:0005447","FYPO:0001985"],"is_obsolete":false,"name":"resistance to hydroxyurea and methyl methanesulfonate","synonyms":[{"name":"resistance to hydroxyurea and methyl methanesulfonate during mitotic cell cycle","type":"related"},{"name":"resistance to hydroxyurea and methyl methanesulfonate during vegetative growth","type":"exact"},{"name":"resistance to hydroxyurea and methyl methanesulfonate in combination","type":"exact"},{"name":"resistant to hydroxyurea and methyl methanesulfonate","type":"exact"}],"termid":"FYPO:0009050"}


id: PATO:0000413
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A shape quality inhering in a bearer by virtue of the bearer's having an equal-sided rectangular form.","definition_xrefs":["answers.com:answers.com"],"direct_ancestors":[{"relation_name":"is_a","term_name":"parallelogram","termid":"PATO:0002317"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"square","termid":"PATO:0000413"}


id: PBO:0045779
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"epithelial cell transforming 2 like","termid":"PBO:0045779"}


id: GO:0060306
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the establishment or extent of a membrane potential in the polarizing direction towards the resting potential, usually from positive to negative.","definition_xrefs":["GOC:dph","GOC:mtg_cardiac_conduct_nov11","GOC:tb","GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of membrane potential","termid":"GO:0042391"},{"relation_name":"is_a","term_name":"regulation of biological process","termid":"GO:0050789"},{"relation_name":"regulates","term_name":"membrane repolarization","termid":"GO:0086009"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of membrane repolarization","termid":"GO:0060306"}


id: PBO:0048019
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ferric chelate reductase 1","termid":"PBO:0048019"}


id: PBO:0017067
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Schizosaccharomyces specific protein Mug123","termid":"PBO:0017067"}


id: PBO:0035704
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-sensitive_to_Zeocin","termid":"PBO:0035704"}


id: PBO:0001822
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"40S ribosomal protein S11 (predicted)","termid":"PBO:0001822"}


id: PBO:0083227
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Dubious open reading frame; unlikely to encode a functional protein, based on available experimental and comparative sequence data; completely overlaps with YCR045C; identified by gene-trapping, microarray expression analysis, and genome-wide homology searching","termid":"PBO:0083227"}


id: PBO:0046030
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"eukaryotic translation initiation factor 2D","termid":"PBO:0046030"}


id: PBO:0048752
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glycine-N-acyltransferase like 3","termid":"PBO:0048752"}


id: GO:0036321
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The regulated release of ghrelin from a cell. Ghrelin is a 28 amino acid hunger-stimulating peptide hormone.","definition_xrefs":["PMID:14610293","Wikipedia:Ghrelin","GOC:cjm"],"direct_ancestors":[{"relation_name":"is_a","term_name":"peptide hormone secretion","termid":"GO:0030072"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"part_of","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0051179"}],"interesting_parent_ids":["GO:0051179","GO:0006810","GO:0008150","GO:0023052"],"is_obsolete":false,"name":"ghrelin secretion","synonyms":[{"name":"pancreatic ghrelin secretion","type":"narrow"}],"termid":"GO:0036321"}


id: PBO:0004636
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"alkB homolog/2-OG-Fe(II) oxygenase family (predicted)","termid":"PBO:0004636"}


id: FYPO:0002215
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell morphology phenotype in which a vegetatively growing cell is viable, is elongated, and is curved along the long axis. In a curved cell, the long axis follows a smooth bend rather than a straight line.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"viable elongated vegetative cell","termid":"FYPO:0001492"},{"relation_name":"is_a","term_name":"viable curved vegetative cell","termid":"FYPO:0002112"},{"relation_name":"is_a","term_name":"curved elongated vegetative cell","termid":"FYPO:0005103"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"has_part","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"has_part","termid":"FYPO:0000005"},{"rel_name":"has_part","termid":"FYPO:0000004"},{"rel_name":"is_a","termid":"FYPO:0000005"},{"rel_name":"has_part","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000004"}],"interesting_parent_ids":["FYPO:0000005","FYPO:0000002","FYPO:0001320","FYPO:0000004","FYPO:0001985"],"is_obsolete":false,"name":"viable curved elongated vegetative cell","synonyms":[{"name":"curved elongated viable cell","type":"exact"},{"name":"viable curved elongated cell","type":"exact"},{"name":"viable curved elongated cell during vegetative growth","type":"exact"},{"name":"viable curved elongated vegetative cell during mitotic cell cycle","type":"related"}],"termid":"FYPO:0002215"}


id: PBO:0044516
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"D-2-hydroxyglutarate dehydrogenase","termid":"PBO:0044516"}


id: PR:O94492
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A glutamate-1-semialdehyde 2,1-aminomutase that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO04783","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized aminotransferase C417.11c (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC417.11c","secondary_identifiers":["UniProtKB:O94492"],"synonyms":[{"name":"Spom972h-hemL","type":"exact"}],"termid":"PR:O94492"}


id: GO:0018065
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The covalent attachment of a cofactor to a protein.","definition_xrefs":["GOC:ai"],"gene_count":0,"genotype_count":0,"name":"obsolete protein-cofactor linkage (obsolete GO:0018065)","termid":"GO:0018065"}


id: PBO:0028398
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_35S_rRNA_precursor_level","termid":"PBO:0028398"}


id: PBO:0074031
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"solute carrier family 25 member 18 pseudogene 1","termid":"PBO:0074031"}


id: GO:0034830
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: (2Z)-2,4-dihydroxydec-2-enedioate = pyruvate + 7-oxoheptanoate.","definition_xrefs":["UM-BBD_reactionID:r1174"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxo-acid-lyase activity","termid":"GO:0016833"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016829"}],"interesting_parent_ids":["GO:0016829","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"(2Z)-2,4-dihydroxydec-2-enedioate aldolase activity","secondary_identifiers":["EC:4.1.3.-"],"termid":"GO:0034830"}


id: GO:0035550
data:
  {"annotated_genes":["SJAG_02766"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[87087],"is_not":false,"summary":null,"term":"GO:0035550"}]},"cv_name":"cellular_component","definition":"A multiprotein nickel-containing complex that possesses urease activity (catalysis of the hydrolysis of urea to ammonia and carbon dioxide).","definition_xrefs":["InterPro:IPR008221","PMID:2651866"],"direct_ancestors":[{"relation_name":"is_a","term_name":"catalytic complex","termid":"GO:1902494"},{"relation_name":"part_of","term_name":"cytoplasm","termid":"GO:0005737"}],"gene_count":1,"genes_by_uniquename":{"SJAG_02766":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575","GO:0032991","GO:0005737"],"is_obsolete":false,"name":"urease complex","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0035550","terms_by_termid":{"GO:0035550":null}}


id: GO:0009094
data:
  {"annotated_genes":["SJAG_03124","SJAG_00518"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[76862,85533],"is_not":false,"summary":null,"term":"GO:0009094"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of L-phenylalanine, the L-enantiomer of 2-amino-3-phenylpropanoic acid, i.e. (2S)-2-amino-3-phenylpropanoic acid.","definition_xrefs":["GOC:jsg","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"L-phenylalanine metabolic process","termid":"GO:0006558"},{"relation_name":"is_a","term_name":"aromatic amino acid family biosynthetic process, prephenate pathway","termid":"GO:0009095"},{"relation_name":"is_a","term_name":"erythrose 4-phosphate/phosphoenolpyruvate family amino acid biosynthetic process","termid":"GO:1902223"}],"gene_count":2,"genes_by_uniquename":{"SJAG_00518":null,"SJAG_03124":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006520"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0008150","GO:0006520","GO:0044281"],"is_obsolete":false,"name":"L-phenylalanine biosynthetic process","references_by_uniquename":{"GO_REF:0000107":null,"PMID:21873635":null},"secondary_identifiers":["GO:0019274","GO:0019275"],"synonyms":[{"name":"L-phenylalanine anabolism","type":"exact"},{"name":"L-phenylalanine biosynthesis","type":"exact"},{"name":"L-phenylalanine formation","type":"exact"},{"name":"L-phenylalanine synthesis","type":"exact"},{"name":"phenylalanine biosynthesis","type":"broad"},{"name":"phenylalanine biosynthetic process","type":"broad"},{"name":"phenylalanine biosynthetic process, prephenate pathway","type":"related"},{"name":"phenylalanine biosynthetic process, shikimate pathway","type":"related"}],"termid":"GO:0009094","terms_by_termid":{"GO:0009094":null}}


id: GO:0047560
data:
  {"annotated_genes":["SJAG_02488"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[72736],"is_not":false,"summary":null,"term":"GO:0047560"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: NADP+ + sphinganine = 3-dehydrosphinganine + H+ + NADPH.","definition_xrefs":["EC:1.1.1.102","RHEA:22640"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor","termid":"GO:0016616"}],"gene_count":1,"genes_by_uniquename":{"SJAG_02488":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016491"],"is_obsolete":false,"name":"3-dehydrosphinganine reductase activity","references_by_uniquename":{"PMID:21873635":null},"secondary_identifiers":["MetaCyc:3-DEHYDROSPHINGANINE-REDUCTASE-RXN","KEGG_REACTION:R02978","Reactome:R-HSA-428123"],"synonyms":[{"name":"3-ketosphinganine reductase activity","type":"related"},{"name":"3-oxosphinganine reductase activity","type":"related"},{"name":"3-oxosphinganine:NADPH oxidoreductase activity","type":"related"},{"name":"D-3-dehydrosphinganine reductase activity","type":"related"},{"name":"D-3-oxosphinganine reductase activity","type":"related"},{"name":"D-3-oxosphinganine:B-NADPH oxidoreductase activity","type":"related"},{"name":"D-erythro-dihydrosphingosine:NADP+ 3-oxidoreductase activity","type":"related"},{"name":"DSR activity","type":"related"},{"name":"KTS reductase activity","type":"related"}],"termid":"GO:0047560","terms_by_termid":{"GO:0047560":null}}


id: GO:0141000
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the transfer of a ubiquitin molecule to histone 4 at the lysine-91 residue.","definition_xrefs":["PMID:19818714"],"direct_ancestors":[{"relation_name":"is_a","term_name":"histone H4 ubiquitin ligase activity","termid":"GO:0141056"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0019787"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0016746"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0004842"},{"rel_name":"is_a","termid":"GO:0140096"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003824","GO:0019787","GO:0016740","GO:0003674","GO:0016746","GO:0004842","GO:0140096"],"is_obsolete":false,"name":"histone H4K91 ubiquitin ligase activity","synonyms":[{"name":"histone H4-K91 ubiquitin ligase activity","type":"exact"},{"name":"histone ubiquitin ligase activity (H4-K91 specific)","type":"exact"}],"termid":"GO:0141000"}


id: RO:0002408
data:
  {"annotation_feature_type":"gene","cv_name":"relationship","direct_ancestors":[{"relation_name":"is_a","term_name":"directly_negatively_regulates","termid":"RO:0002630"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"directly_inhibits","termid":"RO:0002408"}


id: PBO:0069451
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 716, pseudogene","termid":"PBO:0069451"}


id: PBO:0029193
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-split_kinetochore","termid":"PBO:0029193"}


id: SO:0002104
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A pseudogenic joining region which closely resembles a known functional T receptor (TR) joining gene but in which the coding region has stop codons, frameshift mutations or a mutation that effects the initiation codon that rearranges at the DNA level and codes the joining region of the variable domain of an immunoglobulin chain.","definition_xrefs":["GENCODE:http://www.gencodegenes.org/gencode_biotypes.html","IGMT:http://www.imgt.org/IMGTScientificChart/SequenceDescription/Keywords.php"],"direct_ancestors":[{"relation_name":"is_a","term_name":"T_cell_receptor_pseudogene","termid":"SO:0002099"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TR_J_pseudogene","synonyms":[{"name":"T cell receptor J pseudogene","type":"exact"},{"name":"T cell receptor Joining pseudogene","type":"exact"},{"name":"TR J pseudogene","type":"exact"},{"name":"T_cell_receptor_J_pseudogene","type":"exact"},{"name":"T_cell_receptor_Joining_pseudogene","type":"exact"}],"termid":"SO:0002104"}


id: GO:0003864
data:
  {"annotated_genes":["SJAG_05200"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[76499],"is_not":false,"summary":null,"term":"GO:0003864"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: 5,10-methylenetetrahydrofolate + 3-methyl-2-oxobutanoate = tetrahydrofolate + 2-dehydropantoate.","definition_xrefs":["EC:2.1.2.11"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hydroxymethyl-, formyl- and related transferase activity","termid":"GO:0016742"}],"gene_count":1,"genes_by_uniquename":{"SJAG_05200":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016741"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016740"}],"interesting_parent_ids":["GO:0003824","GO:0016740","GO:0016741","GO:0003674"],"is_obsolete":false,"name":"3-methyl-2-oxobutanoate hydroxymethyltransferase activity","references_by_uniquename":{"PMID:21873635":null},"secondary_identifiers":["MetaCyc:3-CH3-2-OXOBUTANOATE-OH-CH3-XFER-RXN","RHEA:11824"],"synonyms":[{"name":"5,10-methylene tetrahydrofolate:alpha-ketoisovalerate hydroxymethyltransferase activity","type":"related"},{"name":"5,10-methylenetetrahydrofolate:3-methyl-2-oxobutanoate hydroxymethyltransferase activity","type":"related"},{"name":"alpha-ketoisovalerate hydroxymethyltransferase activity","type":"related"},{"name":"dehydropantoate hydroxymethyltransferase activity","type":"related"},{"name":"ketopantoate hydroxymethyltransferase activity","type":"related"},{"name":"oxopantoate hydroxymethyltransferase activity","type":"related"}],"termid":"GO:0003864","terms_by_termid":{"GO:0003864":null}}


id: PBO:0090224
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RhoGEF for Cdc42 (Gef1)","termid":"PBO:0090224"}


id: PBO:0089222
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"EST1 family nonsense-mediated mRNA decay (NMD) pathway protein Ebs1","termid":"PBO:0089222"}


id: GO:0015665
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Enables the transfer of an alcohol from one side of a membrane to the other. An alcohol is any carbon compound that contains a hydroxyl group.","definition_xrefs":["ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"organic hydroxy compound transmembrane transporter activity","termid":"GO:1901618"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0005215","GO:0003674","GO:0022857"],"is_obsolete":false,"name":"alcohol transmembrane transporter activity","termid":"GO:0015665"}


id: PBO:0051128
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"immunoglobulin heavy variable 2-5","termid":"PBO:0051128"}


id: GO:0050406
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: [acetyl-CoA carboxylase]-phosphate + H2O = [acetyl-CoA carboxylase] + phosphate.","definition_xrefs":["MetaCyc:ACETYL-COA-CARBOXYLASE-PHOSPHATASE-RXN","EC:3.1.3.44"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phosphoprotein phosphatase activity","termid":"GO:0004721"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0140096"},{"rel_name":"is_a","termid":"GO:0004721"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0016788"}],"interesting_parent_ids":["GO:0016787","GO:0016788","GO:0003824","GO:0140096","GO:0004721","GO:0003674"],"is_obsolete":false,"name":"[acetyl-CoA carboxylase]-phosphatase activity","secondary_identifiers":["RHEA:17125"],"synonyms":[{"name":"acetyl-CoA carboxylase-phosphatase activity","type":"related"},{"name":"acetyl-CoA:carbon-dioxide ligase (ADP-forming)-phosphate phosphohydrolase activity","type":"related"}],"termid":"GO:0050406"}


id: PBO:0064098
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"paired like homeodomain 3","termid":"PBO:0064098"}


id: PBO:0059259
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MRPL23 antisense RNA 1","termid":"PBO:0059259"}


id: PBO:0066148
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RBBP4 pseudogene 4","termid":"PBO:0066148"}


id: PBO:0063355
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"prostate and testis expressed opposite C1QTNF9B and MIPEP","termid":"PBO:0063355"}


id: GO:0018168
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The linkage of the chromophore phycoerythrobilin to phycoerythrocyanin via S-phycoerythrobilin-L-cysteine.","definition_xrefs":["RESID:AA0132"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein-phycoerythrobilin linkage","termid":"GO:0017011"},{"relation_name":"is_a","term_name":"peptidyl-cysteine modification","termid":"GO:0018198"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"protein-phycoerythrobilin linkage via S-phycoerythrobilin-L-cysteine","termid":"GO:0018168"}


id: MOD:00188
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-tryptophan residue to 6'-bromo-L-tryptophan.","definition_xrefs":["PubMed:9033387","PubMed:9434739","Unimod:340#W","RESID:AA0179","PubMed:12118011","PubMed:9030520"],"direct_ancestors":[{"relation_name":"is_a","term_name":"halogenated tryptophan","termid":"MOD:01068"},{"relation_name":"is_a","term_name":"monobrominated residue","termid":"MOD:01912"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"6'-bromo-L-tryptophan","synonyms":[{"name":"(2S)-2-amino-3-(6-bromo-1H-indol-3-yl)propanoic acid","type":"exact"},{"name":"6'-BrTrp","type":"exact"},{"name":"6'-bromo-L-tryptophan","type":"exact"},{"name":"Bromo","type":"related"},{"name":"MOD_RES 6'-bromotryptophan","type":"exact"},{"name":"bromination","type":"related"}],"termid":"MOD:00188"}


id: PBO:0088704
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Arf GEF","termid":"PBO:0088704"}


id: FYPO:0006316
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A physical cellular phenotype in which cells contain more spindle pole bodies (SPBs) than normal during the second meiotic nuclear division.","definition_xrefs":["PMID:29259000","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"spindle pole bodies present in increased numbers during meiosis","termid":"FYPO:0004609"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"output_of","termid":"FYPO:0000054"},{"rel_name":"output_of","termid":"FYPO:0000631"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000002","FYPO:0000054","FYPO:0000631","FYPO:0005447"],"is_obsolete":false,"name":"spindle pole bodies present in increased numbers during meiosis II","synonyms":[{"name":"SPBs present in increased numbers during meiosis II","type":"exact"},{"name":"excess meiotic spindle pole bodies present during meiosis II","type":"exact"},{"name":"excess spindle pole bodies present during meiosis II","type":"exact"},{"name":"extra spindle pole bodies present during meiosis II","type":"exact"},{"name":"spindle pole bodies present in greater numbers during meiosis II","type":"exact"},{"name":"spindle pole bodies present in increased numbers during second meiotic nuclear division","type":"exact"}],"termid":"FYPO:0006316"}


id: PBO:0050838
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"IARS2 pseudogene 1","termid":"PBO:0050838"}


id: PATO:0001855
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A positional quality inhering in a bearer by virtue of the bearer's being in the plane of the horizon.","definition_xrefs":["thefreedictionary.com:thefreedictionary.com"],"direct_ancestors":[{"relation_name":"is_a","term_name":"position","termid":"PATO:0000140"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"horizontal","termid":"PATO:0001855"}


id: PBO:0044490
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cytochrome P450 family 46 subfamily A member 4, pseudogene","termid":"PBO:0044490"}


id: PBO:0052321
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"KIAA1217","termid":"PBO:0052321"}


id: GO:1904144
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A protein complex which is capable of phosphatidylinositol phosphate phosphatase activity.","definition_xrefs":["GOC:bhm","PMID:12525165","GO_REF:0000088","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phosphatase complex","termid":"GO:1903293"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0005575","GO:0032991"],"is_obsolete":false,"name":"phosphatidylinositol phosphate phosphatase complex","synonyms":[{"name":"prostatic acid phosphatase complex","type":"narrow"}],"termid":"GO:1904144"}


id: PBO:0028331
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_protein_localization_during_mitosis","termid":"PBO:0028331"}


id: GO:1904542
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of free ubiquitin chain polymerization.","definition_xrefs":["GOC:pad","GOC:PARL","GO_REF:0000058","GOC:TermGenie","PMID:24660806"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of protein polymerization","termid":"GO:0032271"},{"relation_name":"regulates","term_name":"free ubiquitin chain polymerization","termid":"GO:0010994"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0065003"},{"rel_name":"regulates","termid":"GO:0044085"}],"interesting_parent_ids":["GO:0008150","GO:0065003","GO:0044085"],"is_obsolete":false,"name":"regulation of free ubiquitin chain polymerization","termid":"GO:1904542"}


id: PBO:0005380
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial metallopeptidase involved in genome maintenance Pgp1","termid":"PBO:0005380"}


id: FYPO:0005877
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"Auxotrophy in which a cell is unable to synthesize glutamate, and therefore requires glutamate in the medium for vegetative cell growth.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"auxotrophy","termid":"FYPO:0000128"},{"relation_name":"is_a","term_name":"abnormal cellular physical quality phenotype","termid":"FYPO:0004638"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000002"],"is_obsolete":false,"name":"growth auxotrophic for glutamate","synonyms":[{"name":"glutamate auxotrophy","type":"exact"},{"name":"growth auxotrophic for glutamate during mitotic cell cycle","type":"related"},{"name":"growth auxotrophic for glutamate during vegetative growth","type":"exact"},{"name":"growth auxotrophic for glutamic acid","type":"exact"}],"termid":"FYPO:0005877"}


id: GO:0031754
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to an Edg-1 sphingosine 1-phosphate receptor.","definition_xrefs":["GOC:nln","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"endothelial differentiation G protein-coupled receptor binding","termid":"GO:0031753"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0005515"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0005488","GO:0005515"],"is_obsolete":false,"name":"Edg-1 sphingosine 1-phosphate receptor binding","synonyms":[{"name":"Edg-1 sphingosine 1-phosphate receptor ligand","type":"narrow"}],"termid":"GO:0031754"}


id: GO:0150139
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of interleukin-37 production.","definition_xrefs":["GOC:aruk"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of cytokine production","termid":"GO:0001819"},{"relation_name":"is_a","term_name":"regulation of interleukin-37 production","termid":"GO:0150136"},{"relation_name":"positively_regulates","term_name":"interleukin-37 production","termid":"GO:0150137"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"positively_regulates","termid":"GO:0010467"},{"rel_name":"regulates","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0010467"],"is_obsolete":false,"name":"positive regulation of interleukin-37 production","synonyms":[{"name":"positive regulation of interleukin-37 biosynthetic process","type":"narrow"}],"termid":"GO:0150139"}


id: PBO:0086071
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein of unknown function that may interact with ribosomes; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm and to COPI-coated vesicles (early Golgi); mtc1 is synthetically lethal with cdc13-1","termid":"PBO:0086071"}


id: FYPO:0003244
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which mRNA splicing via the spliceosome takes place normally for some, but is decreased for other, specific introns.","definition_xrefs":["PMID:23754748"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased mRNA splicing, via spliceosome","termid":"FYPO:0003029"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0006551"},{"rel_name":"is_a","termid":"FYPO:0000294"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000002","FYPO:0005447","FYPO:0000294","FYPO:0006551"],"is_obsolete":false,"name":"decreased mRNA splicing, via spliceosome, intron-specific","synonyms":[{"name":"differential pre-mRNA splicing defects","type":"exact"},{"name":"intron-specific abnormal mRNA splicing, via spliceosome during mitotic cell cycle","type":"related"},{"name":"intron-specific abnormal mRNA splicing, via spliceosome during vegetative growth","type":"exact"},{"name":"intron-specific abnormal nuclear mRNA splicing, via spliceosome","type":"exact"},{"name":"intron-specific mRNA splicing defects","type":"exact"}],"termid":"FYPO:0003244"}


id: PBO:0083299
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Dubious open reading frame; unlikely to encode a functional protein, based on available experimental and comparative sequence data; overlaps 3' end of ORF ASI1/YMR119W","termid":"PBO:0083299"}


id: PBO:0064911
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protein phosphatase 4 regulatory subunit 2","termid":"PBO:0064911"}


id: PBO:0078197
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"T cell receptor beta variable 5-7 (non-functional)","termid":"PBO:0078197"}


id: PBO:0076898
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"testis expressed 52","termid":"PBO:0076898"}


id: PBO:0086009
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein of unknown function; SWAT-GFP and mCherry fusion proteins localize to the cytosol; identified by gene-trapping, microarray-based expression analysis, and genome-wide homology searching","termid":"PBO:0086009"}


id: PBO:0034100
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-genetically_interacts_with","termid":"PBO:0034100"}


id: PBO:0051804
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"IQ motif and Sec7 domain ArfGEF 3","termid":"PBO:0051804"}


id: PBO:0047408
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"F-box protein 46","termid":"PBO:0047408"}


id: PR:O13714
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPAC14C4.07 gene.","definition_xrefs":["UniProtKB:O13714","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized membrane protein C14C4.07 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC14C4.07","synonyms":[{"name":"Spom972h-SPAC14C4.07","type":"exact"}],"termid":"PR:O13714"}


id: PR:000027610
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A mediator of replication checkpoint protein 1 phosphorylated 1 in Schizosaccharomyces pombe. Phosphorylated at least on the last Thr residue within the TQxSQx(6)TQ motif. Phosphorylated by Rad3 and Tel1. UniProtKB:Q9P7T4-1, Thr-645, MOD:00047.","definition_xrefs":["PomBase:MAH","PMID:14585996"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mediator of replication checkpoint protein 1","termid":"PR:000027605"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mediator of replication checkpoint protein 1 phosphorylated 1 (Schizosaccharomyces pombe)","pombase_gene_id":"SPAC694.06c","synonyms":[{"name":"Spom-mrc1/Phos:1","type":"exact"}],"termid":"PR:000027610"}


id: PBO:0087133
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA binding protein involved in synthesis of 18S and 5.8S rRNAs; component of ribosomal small subunit (SSU) processome and 90S preribosome; required for pre-rRNA packaging and compaction of processome into dense terminal balls; part of Mak21p-Noc2p-Rrp5p module that associates with nascent pre-rRNA during transcription with role in biogenesis of large ribosomal subunit; binds single stranded tracts of U's; relocalizes from nucleolus to nucleus upon DNA replication stress","termid":"PBO:0087133"}


id: PBO:0108578
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosome large subunit export factor","termid":"PBO:0108578"}


id: GO:0047206
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-L-lysyl-D-alanyl-D-alanine + L-alanyl-tRNA(Ala) = UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-N6-(L-alanyl)-L-lysyl-D-alanyl-D-alanine + tRNA(Ala).","definition_xrefs":["EC:2.3.2.10"],"direct_ancestors":[{"relation_name":"is_a","term_name":"aminoacyltransferase activity","termid":"GO:0016755"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0016746"}],"interesting_parent_ids":["GO:0016740","GO:0016746","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"UDP-N-acetylmuramoylpentapeptide-lysine N6-alanyltransferase activity","secondary_identifiers":["MetaCyc:2.3.2.10-RXN","RHEA:12432"],"synonyms":[{"name":"UDP-N-acetylmuramoylpentapeptide lysine N(6)-alanyltransferase activity","type":"exact"},{"name":"UDP-N-acetylmuramoylpentapeptide lysine N6-alanyltransferase activity","type":"exact"},{"name":"alanyl-transfer ribonucleate-uridine diphosphoacetylmuramoylpentapeptide transferase activity","type":"exact"},{"name":"uridine diphosphoacetylmuramoylpentapeptide lysine N(6)-alanyltransferase activity","type":"exact"},{"name":"uridine diphosphoacetylmuramoylpentapeptide lysine N6-alanyltransferase activity","type":"exact"}],"termid":"GO:0047206"}


id: PBO:0036186
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_histone_H3-K4_dimethylation_at_centromere_outer_repeat_during_vegetative_growth","termid":"PBO:0036186"}


id: PBO:0088853
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"plasma membrane TRP-like calcium ion channel Trp1322","termid":"PBO:0088853"}


id: GO:0043578
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of the nuclear matrix, the dense fibrillar network lying on the inner side of the nuclear membrane.","definition_xrefs":["GOC:dph","GOC:mah","GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nucleus organization","termid":"GO:0006997"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"nuclear matrix organization","synonyms":[{"name":"nuclear matrix organisation","type":"exact"},{"name":"nuclear matrix organization and biogenesis","type":"related"},{"name":"nucleoskeleton organization","type":"exact"}],"termid":"GO:0043578"}


id: FYPO:0007442
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to the endoplasmic reticulum membrane is normal (i.e. indistinguishable from wild type).","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal protein localization to endoplasmic reticulum during vegetative growth","termid":"FYPO:0006378"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001312"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0000257"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0000257","FYPO:0000002","FYPO:0001312","FYPO:0000138"],"is_obsolete":false,"name":"normal protein localization to endoplasmic reticulum membrane","synonyms":[{"name":"normal protein localization to ER membrane","type":"exact"},{"name":"normal protein localization to endoplasmic reticulum membrane during mitotic cell cycle","type":"related"},{"name":"normal protein localization to endoplasmic reticulum membrane during vegetative growth","type":"exact"}],"termid":"FYPO:0007442"}


id: PBO:0071168
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L23a pseudogene 7","termid":"PBO:0071168"}


id: GO:0010701
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that increases the frequency, rate or extent of the regulated release of norepinephrine.","definition_xrefs":["GOC:tb","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of norepinephrine secretion","termid":"GO:0014061"},{"relation_name":"is_a","term_name":"positive regulation of catecholamine secretion","termid":"GO:0033605"},{"relation_name":"positively_regulates","term_name":"norepinephrine secretion","termid":"GO:0048243"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"positively_regulates","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0006810","GO:0008150"],"is_obsolete":false,"name":"positive regulation of norepinephrine secretion","termid":"GO:0010701"}


id: PBO:0085727
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein involved in the nonsense-mediated mRNA decay (NMD) pathway; interacts with Nam7p and Upf3p; involved in telomere maintenance","termid":"PBO:0085727"}


id: GO:0071537
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. A process of protein complex assembly in which the arrangement and bonding together of the set of components that form the protein complex is mediated by a C3HC4-type RING finger domain interaction.","definition_xrefs":["InterPro:IPR018957","GOC:amm"],"gene_count":0,"genotype_count":0,"name":"obsolete C3HC4-type RING finger domain-mediated complex assembly (obsolete GO:0071537)","synonyms":[{"name":"zinc finger C3HC4 type domain-mediated complex assembly","type":"exact"}],"termid":"GO:0071537"}


id: PBO:0042376
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CD200R1 pseudogene 1","termid":"PBO:0042376"}


id: MOD:00819
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-glutamic acid residue to L-2-aminobutanoic acid.","definition_xrefs":["ChEBI:35619","DeltaMass:0","RESID:AA0409","PubMed:11740505"],"direct_ancestors":[{"relation_name":"is_a","term_name":"modified L-glutamic acid residue","termid":"MOD:00906"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"L-2-aminobutanoic acid (Glu)","synonyms":[{"name":"(S)-2-aminobutanoic acid","type":"exact"},{"name":"Abu","type":"exact"},{"name":"L-2-amino-n-butyric acid","type":"exact"},{"name":"L-2-aminobutanoic acid","type":"exact"},{"name":"L-2-aminobutyric acid","type":"exact"},{"name":"L-alpha-amino-n-butyric acid","type":"exact"},{"name":"L-alpha-aminobutyric acid","type":"exact"},{"name":"L-butyrine","type":"exact"},{"name":"alpha-amino-n-butyric acid","type":"exact"},{"name":"alpha-aminobutyric acid","type":"exact"},{"name":"butyrine","type":"exact"},{"name":"dCbxGlu","type":"exact"}],"termid":"MOD:00819"}


id: GO:0004473
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: (S)-malate + NADP+ = pyruvate + CO2 + NADPH + H+.","definition_xrefs":["EC:1.1.1.40"],"direct_ancestors":[{"relation_name":"is_a","term_name":"malic enzyme activity","termid":"GO:0004470"},{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor","termid":"GO:0016616"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016491"],"is_obsolete":false,"name":"malate dehydrogenase (decarboxylating) (NADP+) activity","secondary_identifiers":["KEGG_REACTION:R00216","RHEA:18253","Reactome:R-HSA-9012036","MetaCyc:MALIC-NADP-RXN","Reactome:R-HSA-9012349"],"synonyms":[{"name":"malate dehydrogenase (NADP, decarboxylating)","type":"related"},{"name":"'malic' enzyme","type":"related"},{"name":"(S)-malate:NADP+ oxidoreductase (oxaloacetate-decarboxylating)","type":"related"},{"name":"L-malate:NADP oxidoreductase activity","type":"related"},{"name":"NADP-linked decarboxylating malic enzyme","type":"related"},{"name":"NADP-malic enzyme activity","type":"related"},{"name":"NADP-specific malate dehydrogenase activity","type":"related"},{"name":"NADP-specific malic enzyme","type":"related"},{"name":"malate dehydrogenase (decarboxylating, NADP)","type":"related"}],"termid":"GO:0004473"}


id: GO:0070461
data:
  {"annotated_genes":["SJAG_04274","SJAG_03752","SJAG_03599","SJAG_03668","SJAG_00087","SJAG_01658","SJAG_02773","SJAG_02066","SJAG_04205","SJAG_02458","SJAG_01711","SJAG_00184","SJAG_03776","SJAG_00641","SJAG_00584","SJAG_04613","SJAG_02927","SJAG_02541","SJAG_01475"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[84232,73453,84996,94018,102256,112652,106988,76199,93349,102673,110530,73541,103032,112698,73086,87048,98770,111423,84089],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0000124"},{"annotations":[57991,62780,57657],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0046695"}]},"cv_name":"cellular_component","definition":"A histone acetyltransferase complex that acetylates nucleosomal histones H2B, H3, or H4 and is required for the expression of a subset of Pol II-transcribed genes. This complex includes the acetyltransferases GCN5/KAT2A or PCAF/KAT2B, several proteins of the ADA, SGF and SPT families, and several TBP-associate proteins (TAFs).","definition_xrefs":["GOC:mah","PMID:10637607","PMID:17337012"],"direct_ancestors":[{"relation_name":"is_a","term_name":"histone acetyltransferase complex","termid":"GO:0000123"}],"gene_count":19,"genes_by_uniquename":{"SJAG_00087":null,"SJAG_00184":null,"SJAG_00584":null,"SJAG_00641":null,"SJAG_01475":null,"SJAG_01658":null,"SJAG_01711":null,"SJAG_02066":null,"SJAG_02458":null,"SJAG_02541":null,"SJAG_02773":null,"SJAG_02927":null,"SJAG_03599":null,"SJAG_03668":null,"SJAG_03752":null,"SJAG_03776":null,"SJAG_04205":null,"SJAG_04274":null,"SJAG_04613":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0005694"}],"interesting_parent_ids":["GO:0032991","GO:0005575","GO:0005694"],"is_obsolete":false,"name":"SAGA-type complex","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000107":null,"PMID:21873635":null},"synonyms":[{"name":"SAGA family complex","type":"exact"}],"termid":"GO:0070461","terms_by_termid":{"GO:0000124":null,"GO:0046695":null}}


id: PBO:0089667
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CP2 mannose-ethanolamine phosphotransferase GPI anchor biosynthesis protein Gpi7","termid":"PBO:0089667"}


id: PBO:0028271
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_malate_dehydrogenase_(decarboxylating)_(NAD+)_activity","termid":"PBO:0028271"}


id: GO:0044175
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The lipid bilayer surrounding a host cell endosome.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"host cell membrane","termid":"GO:0033644"},{"relation_name":"part_of","term_name":"host cell endosome","termid":"GO:0044174"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"host cell endosome membrane","synonyms":[{"name":"host endosome membrane","type":"exact"}],"termid":"GO:0044175"}


id: PBO:0057448
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 568","termid":"PBO:0057448"}


id: MOD:00095
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-glutamine residue to L-glutamine amide.","definition_xrefs":["PubMed:9048550","PubMed:7673220","RESID:AA0086"],"direct_ancestors":[{"relation_name":"is_a","term_name":"C1-amidated residue","termid":"MOD:00883"},{"relation_name":"is_a","term_name":"modified L-glutamine residue","termid":"MOD:00907"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"L-glutamine amide","synonyms":[{"name":"(2S)-2-aminopentanediamide","type":"exact"},{"name":"GlnN","type":"exact"},{"name":"L-glutamine amide","type":"exact"},{"name":"MOD_RES Glutamine amide","type":"exact"},{"name":"amidated L-glutamine","type":"exact"},{"name":"glutaminamide","type":"exact"}],"termid":"MOD:00095"}


id: PBO:0042082
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"coiled-coil domain containing 149","termid":"PBO:0042082"}


id: GO:1903598
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of gap junction assembly.","definition_xrefs":["GOC:BHF","GOC:rl","GO_REF:0000058","GOC:mtg_cardiac_conduct_nov11","GOC:TermGenie","PMID:25017399"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of cell junction assembly","termid":"GO:1901890"},{"relation_name":"is_a","term_name":"regulation of gap junction assembly","termid":"GO:1903596"},{"relation_name":"positively_regulates","term_name":"gap junction assembly","termid":"GO:0016264"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0044085"},{"rel_name":"positively_regulates","termid":"GO:0044085"}],"interesting_parent_ids":["GO:0044085","GO:0008150"],"is_obsolete":false,"name":"positive regulation of gap junction assembly","synonyms":[{"name":"activation of gap junction assembly","type":"narrow"},{"name":"up regulation of gap junction assembly","type":"exact"},{"name":"up-regulation of gap junction assembly","type":"exact"},{"name":"upregulation of gap junction assembly","type":"exact"}],"termid":"GO:1903598"}


id: GO:0005745
data:
  {"annotated_genes":["SJAG_01179"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[106249],"is_not":false,"summary":null,"term":"GO:0005745"}]},"cv_name":"cellular_component","definition":"Protease complex of the mitochondrial inner membrane that is involved in mitochondrial protein turnover and in processing of proteins imported into mitochondria.","definition_xrefs":["GOC:mcc","PMID:21147776","PMID:12417197"],"direct_ancestors":[{"relation_name":"is_a","term_name":"inner mitochondrial membrane protein complex","termid":"GO:0098800"},{"relation_name":"is_a","term_name":"peptidase complex","termid":"GO:1905368"}],"gene_count":1,"genes_by_uniquename":{"SJAG_01179":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005739"},{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0005575","GO:0032991","GO:0005739","GO:0005737"],"is_obsolete":false,"name":"m-AAA complex","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0005745","terms_by_termid":{"GO:0005745":null}}


id: MOD:00105
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-serine residue to L-serine amide.","definition_xrefs":["PubMed:743209","RESID:AA0096"],"direct_ancestors":[{"relation_name":"is_a","term_name":"C1-amidated residue","termid":"MOD:00883"},{"relation_name":"is_a","term_name":"modified L-serine residue","termid":"MOD:00916"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"L-serine amide","synonyms":[{"name":"(2S)-2-amino-3-hydroxypropanamide","type":"exact"},{"name":"L-serine amide","type":"exact"},{"name":"MOD_RES Serine amide","type":"exact"},{"name":"SerN","type":"exact"},{"name":"amidated L-serine","type":"exact"},{"name":"serinamide","type":"exact"}],"termid":"MOD:00105"}


id: GO:0003780
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Interacting selectively with two actin filaments to anchor them together.","definition_xrefs":["GOC:jid"],"gene_count":0,"genotype_count":0,"name":"obsolete actin cross-linking activity (obsolete GO:0003780)","synonyms":[{"name":"actin cross-linking activity","type":"exact"}],"termid":"GO:0003780"}


id: PBO:0027004
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-fragmented_DNA_during_meiotic_cell_cycle","termid":"PBO:0027004"}


id: PBO:0084208
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Homeodomain-containing protein and putative transcription factor; found associated with chromatin; target of SBF transcription factor; induced during meiosis and under cell-damaging conditions; TOS8 has a paralog, CUP9, that arose from the whole genome duplication","termid":"PBO:0084208"}


id: GO:0004226
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: peptidyl-Gly-Xaa + H2O = peptidyl-Gly + Xaa.","definition_xrefs":["EC:3.4.17.4"],"gene_count":0,"genotype_count":0,"name":"obsolete Gly-X carboxypeptidase activity (obsolete GO:0004226)","synonyms":[{"name":"Gly-X carboxypeptidase activity","type":"exact"},{"name":"Gly-Xaa carboxypeptidase activity","type":"related"},{"name":"carboxypeptidase S activity","type":"related"},{"name":"carboxypeptidase a","type":"related"},{"name":"glycine carboxypeptidase activity","type":"related"},{"name":"peptidase alpha","type":"related"},{"name":"yeast carboxypeptidase activity","type":"related"}],"termid":"GO:0004226"}


id: SO:0000671
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A sequence eliminated from the genome of ciliates during nuclear differentiation.","definition_xrefs":["SO:ma"],"direct_ancestors":[{"relation_name":"is_a","term_name":"sequence_rearrangement_feature","termid":"SO:0000669"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"internal_eliminated_sequence","synonyms":[{"name":"internal eliminated sequence","type":"exact"}],"termid":"SO:0000671"}


id: GO:2000066
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of cortisol biosynthetic process.","definition_xrefs":["GOC:obol","GOC:yaf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of glucocorticoid biosynthetic process","termid":"GO:0031948"},{"relation_name":"is_a","term_name":"positive regulation of alcohol biosynthetic process","termid":"GO:1902932"},{"relation_name":"is_a","term_name":"regulation of cortisol biosynthetic process","termid":"GO:2000064"},{"relation_name":"positively_regulates","term_name":"cortisol biosynthetic process","termid":"GO:0034651"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"positively_regulates","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"positively_regulates","termid":"GO:0006629"},{"rel_name":"regulates","termid":"GO:0044281"},{"rel_name":"regulates","termid":"GO:0006629"}],"interesting_parent_ids":["GO:0044281","GO:0008150","GO:0006629"],"is_obsolete":false,"name":"positive regulation of cortisol biosynthetic process","synonyms":[{"name":"positive regulation of cortisol anabolism","type":"related"},{"name":"positive regulation of cortisol biosynthesis","type":"exact"},{"name":"positive regulation of cortisol formation","type":"exact"},{"name":"positive regulation of cortisol synthesis","type":"exact"}],"termid":"GO:2000066"}


id: PBO:0004097
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"exonuclease I Exo1","termid":"PBO:0004097"}


id: PBO:0043443
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"calponin 2 pseudogene 3","termid":"PBO:0043443"}


id: PR:O94520
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- emc4 gene.","definition_xrefs":["PRO:DNx","UniProtKB:O94520"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ER membrane protein complex subunit 4 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC1281.03c","synonyms":[{"name":"Spom972h-emc4","type":"exact"}],"termid":"PR:O94520"}


id: PBO:0030459
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abolished_biotin_import","termid":"PBO:0030459"}


id: GO:0008982
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the PEP-dependent, phosphoryl transfer-driven transport of substances across a membrane. The transport happens by catalysis of the reaction: protein N-phosphohistidine + sugar(out) = protein histidine + sugar phosphate(in). This differs from primary and secondary active transport in that the solute is modified during transport.","definition_xrefs":["GOC:mtg_transport","ISBN:0815340729"],"direct_ancestors":[{"relation_name":"is_a","term_name":"carbohydrate transmembrane transporter activity","termid":"GO:0015144"},{"relation_name":"is_a","term_name":"phosphotransferase activity, alcohol group as acceptor","termid":"GO:0016773"},{"relation_name":"is_a","term_name":"active transmembrane transporter activity","termid":"GO:0022804"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0005215","GO:0016740","GO:0022857","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"protein-N(PI)-phosphohistidine-sugar phosphotransferase activity","secondary_identifiers":["GO:0015456","GO:0015455","TC:4.A"],"synonyms":[{"name":"PEP--sugar phosphotransferase enzyme II activity","type":"exact"},{"name":"PEP-dependent phosphotransferase enzyme II","type":"related"},{"name":"PTS permease activity","type":"related"},{"name":"PTS transporter","type":"related"},{"name":"enzyme II of the phosphotransferase system","type":"related"},{"name":"phosphoenolpyruvate-sugar phosphotransferase enzyme II","type":"related"},{"name":"phosphohistidinoprotein-hexose phosphotransferase activity","type":"related"},{"name":"phosphoprotein factor-hexose phosophotransferase activity","type":"related"},{"name":"phosphotransfer-driven group translocator","type":"broad"},{"name":"protein-Np-phosphohistidine-sugar phosphotransferase activity","type":"exact"}],"termid":"GO:0008982"}


id: GO:0106339
data:
  {"annotated_genes":["SJAG_01269"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[93380],"is_not":false,"summary":null,"term":"GO:0106339"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: S-adenosyl-L-methionine + cytosine32 in tRNA= S-adenosyl-L-homocysteine + 2'-O-methylcytidine32 in tRNA.","definition_xrefs":["PMID:25404562"],"direct_ancestors":[{"relation_name":"is_a","term_name":"tRNA (cytidine) methyltransferase activity","termid":"GO:0016427"}],"gene_count":1,"genes_by_uniquename":{"SJAG_01269":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016741"},{"rel_name":"is_a","termid":"GO:0140101"},{"rel_name":"is_a","termid":"GO:0140098"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016741","GO:0016740","GO:0140098","GO:0003674","GO:0140101","GO:0003824"],"is_obsolete":false,"name":"tRNA (cytidine(32)-2'-O)-methyltransferase activity","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["MetaCyc:RXN-11866","RHEA:42396","EC:2.1.1.205"],"synonyms":[{"name":"tRNA (cytidine 32-2'-O)-methyltransferase activity","type":"exact"}],"termid":"GO:0106339","terms_by_termid":{"GO:0106339":null}}


id: PBO:0030212
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_RNA_level_during_cellular_response_to_salt_stress","termid":"PBO:0030212"}


id: PBO:0041548
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chromosome 18 open reading frame 32","termid":"PBO:0041548"}


id: PR:O94606
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- jmj4 gene.","definition_xrefs":["UniProtKB:O94606","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"JmjC domain-containing protein 4 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC622.19","synonyms":[{"name":"Spom972h-jmj4","type":"exact"},{"name":"jumonji domain-containing protein 4 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"meiotically up-regulated gene 149 protein (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:O94606"}


id: PBO:0040422
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ATPase H+ transporting V0 subunit d2","termid":"PBO:0040422"}


id: PBO:0074485
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SMYD3 antisense RNA 1","termid":"PBO:0074485"}


id: GO:0046930
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A protein complex providing a discrete opening in a membrane that allows the passage of gases and/or liquids.","definition_xrefs":["ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"membrane protein complex","termid":"GO:0098796"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0032991","GO:0005575"],"is_obsolete":false,"name":"pore complex","synonyms":[{"name":"channel-forming toxin activity","type":"related"},{"name":"pore","type":"exact"},{"name":"pore-forming toxin activity","type":"related"}],"termid":"GO:0046930"}


id: PBO:0056893
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitotic deacetylase associated SANT domain protein","termid":"PBO:0056893"}


id: PBO:0028359
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_ATPase_activity","termid":"PBO:0028359"}


id: GO:1900130
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of lipid binding.","definition_xrefs":["GOC:TermGenie","GOC:pm"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of binding","termid":"GO:0051098"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of lipid binding","termid":"GO:1900130"}


id: PBO:0068080
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 5S ribosomal pseudogene 386","termid":"PBO:0068080"}


id: PBO:0047982
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"FSHD region gene 1 family member J, pseudogene","termid":"PBO:0047982"}


id: PBO:0088891
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TatD homolog","termid":"PBO:0088891"}


id: GO:0061415
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A transcription regulation process in which the presence of a nonfermentable carbon source leads to a decrease of the frequency, rate, or extent of transcription, from an RNA polymerase II promoter, of specific genes involved in the metabolism of other carbon sources.","definition_xrefs":["PMID:19686338","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"carbon catabolite repression of transcription from RNA polymerase II promoter","termid":"GO:0000437"},{"relation_name":"is_a","term_name":"regulation of transcription from RNA polymerase II promoter by a nonfermentable carbon source","termid":"GO:0061413"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"negatively_regulates","termid":"GO:0006351"},{"rel_name":"regulates","termid":"GO:0006351"},{"rel_name":"regulates","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0006355"}],"interesting_parent_ids":["GO:0006351","GO:0008150","GO:0010467","GO:0006355"],"is_obsolete":false,"name":"negative regulation of transcription from RNA polymerase II promoter by a nonfermentable carbon source","termid":"GO:0061415"}


id: PBO:0058829
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 8059","termid":"PBO:0058829"}


id: PBO:0017468
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-formed_as_result_of","termid":"PBO:0017468"}


id: GO:0017176
data:
  {"annotated_genes":["SJAG_03066","SJAG_04881","SJAG_02913","SJAG_02804","SJAG_04119"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[76335,88690,103906,106847,112334],"is_not":false,"summary":null,"term":"GO:0017176"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: UDP-N-acetyl-D-glucosamine + phosphatidylinositol = UDP + N-acetyl-D-glucosaminylphosphatidylinositol.","definition_xrefs":["EC:2.4.1.198"],"direct_ancestors":[{"relation_name":"is_a","term_name":"acetylglucosaminyltransferase activity","termid":"GO:0008375"}],"gene_count":5,"genes_by_uniquename":{"SJAG_02804":null,"SJAG_02913":null,"SJAG_03066":null,"SJAG_04119":null,"SJAG_04881":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016757"}],"interesting_parent_ids":["GO:0016740","GO:0016757","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"phosphatidylinositol N-acetylglucosaminyltransferase activity","references_by_uniquename":{"GO_REF:0000107":null,"PMID:21873635":null},"secondary_identifiers":["RHEA:14789","MetaCyc:2.4.1.198-RXN"],"synonyms":[{"name":"UDP-N-acetyl-D-glucosamine:1-phosphatidyl-1D-myo-inositol 6-(N-acetyl-alpha-D-glucosaminyl)transferase activity","type":"related"},{"name":"UDP-N-acetyl-D-glucosamine:phosphatidylinositol N-acetyl-D-glucosaminyltransferase activity","type":"related"},{"name":"uridine diphosphoacetylglucosamine alpha-1,6-acetyl-D-glucosaminyltransferase activity","type":"related"},{"name":"uridine diphosphoacetylglucosamine alpha1,6-acetyl-D-glucosaminyltransferase activity","type":"related"}],"termid":"GO:0017176","terms_by_termid":{"GO:0017176":null}}


id: PBO:0053897
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1182","termid":"PBO:0053897"}


id: FYPO:0006007
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the duration of localization of a protein to the site of cell division is normal (i.e. indistinguishable from wild type).","definition_xrefs":["PomBase:mah","PMID:26941334"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal protein localization to cell division site","termid":"FYPO:0002442"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0001312"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0000257","FYPO:0001320","FYPO:0001312","FYPO:0000138"],"is_obsolete":false,"name":"normal duration of protein localization to cell division site","synonyms":[{"name":"normal duration of protein localisation to cell division site","type":"exact"},{"name":"normal duration of protein localization to cell division site during mitotic cell cycle","type":"related"},{"name":"normal duration of protein localization to cell division site during vegetative growth","type":"exact"},{"name":"normal duration of protein recruitment to cell division site","type":"related"}],"termid":"FYPO:0006007"}


id: FYPO:0004994
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which the first meiotic nuclear division begins later than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"delayed onset of meiosis","termid":"FYPO:0000477"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0000631","FYPO:0005447","FYPO:0001985"],"is_obsolete":false,"name":"delayed onset of meiosis I","synonyms":[{"name":"delayed meiosis I","type":"exact"},{"name":"delayed onset of first meiotic nuclear division","type":"exact"}],"termid":"FYPO:0004994"}


id: PBO:0027012
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_regulation_of_catalytic_activity","termid":"PBO:0027012"}


id: GO:0003413
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which a chondroblast acquires specialized structural and/or functional features of a chondrocyte that will contribute to the development of a bone. A chondrocyte is a polymorphic cell that forms cartilage.","definition_xrefs":["GOC:dph","GOC:ascb_2009","GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"chondrocyte differentiation","termid":"GO:0002062"},{"relation_name":"part_of","term_name":"cartilage development involved in endochondral bone morphogenesis","termid":"GO:0060351"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"chondrocyte differentiation involved in endochondral bone morphogenesis","termid":"GO:0003413"}


id: GO:0034351
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate, or extent of glial cell apoptotic process.","definition_xrefs":["GOC:mah","GOC:mtg_apoptosis"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of glial cell apoptotic process","termid":"GO:0034350"},{"relation_name":"is_a","term_name":"negative regulation of apoptotic process","termid":"GO:0043066"},{"relation_name":"negatively_regulates","term_name":"glial cell apoptotic process","termid":"GO:0034349"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of glial cell apoptotic process","synonyms":[{"name":"down regulation of glial cell apoptosis","type":"exact"},{"name":"down-regulation of glial cell apoptosis","type":"exact"},{"name":"downregulation of glial cell apoptosis","type":"exact"},{"name":"inhibition of glial cell apoptosis","type":"narrow"},{"name":"negative regulation of glial cell apoptosis","type":"narrow"}],"termid":"GO:0034351"}


id: PBO:0044709
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DEAD-box helicase 10","termid":"PBO:0044709"}


id: GO:0033039
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Enables the transmembrane transfer of an ion by a channel that opens when a soluble salty compound has been bound by the channel complex or one of its constituent parts.","definition_xrefs":["PMID:36332657","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ionotropic taste receptor activity","termid":"GO:0170021"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0038023"},{"rel_name":"is_a","termid":"GO:0005215"}],"interesting_parent_ids":["GO:0038023","GO:0003674","GO:0005215","GO:0022857"],"is_obsolete":false,"name":"ionotropic salty taste receptor activity","termid":"GO:0033039"}


id: PBO:0080491
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"von Willebrand factor A domain containing 8 pseudogene 1","termid":"PBO:0080491"}


id: PBO:0042716
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"centrosomal AT-AC splicing factor","termid":"PBO:0042716"}


id: FYPO:0000685
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"OBSOLETE. A cellular response phenotype in which pheromone-responsive positive regulation of transcription from an RNA polymerase II promoter occurs at a lower level of pheromone than normal.","definition_xrefs":["PomBase:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete transcriptional response to pheromone at decreased pheromone level (obsolete FYPO:0000685)","synonyms":[{"name":"increased sensitivity of positive regulation of transcription from RNA polymerase II promoter by pheromones to pheromone","type":"related"},{"name":"increased transcriptional response to pheromone","type":"related"},{"name":"positive regulation of transcription from RNA polymerase II promoter by pheromones at decreased pheromone level","type":"exact"},{"name":"sensitive to pheromone","type":"related"}],"termid":"FYPO:0000685"}


id: PBO:0057529
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 646","termid":"PBO:0057529"}


id: PATO:0001687
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A positional quality inhering in a bearer by virtue of the bearer's vertical distance of a point above or below a reference surface.","definition_xrefs":["Trailillustrated:Trailillustrated"],"direct_ancestors":[{"relation_name":"is_a","term_name":"position","termid":"PATO:0000140"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"elevation","termid":"PATO:0001687"}


id: PBO:0045816
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"eukaryotic translation elongation factor 1 alpha 1 pseudogene 6","termid":"PBO:0045816"}


id: GO:0051781
data:
  {"annotated_genes":["SJAG_03936","SJAG_04666","SJAG_01114","SJAG_02838","SJAG_04776","SJAG_02392","SJAG_04597","SJAG_01805","SJAG_03704","SJAG_03581","SJAG_00845","SJAG_05290","SJAG_03342","SJAG_01787","SJAG_01188","SJAG_04468","SJAG_03631","SJAG_00514","SJAG_00082"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[90001,85694],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1903501"},{"annotations":[90002,90170,83297,105795,108572],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1903473"},{"annotations":[99111,86442,114402,106034],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1903617"},{"annotations":[102399,100546,101747,89408,112971,110612,108573,76868,85566,88034],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0140281"},{"annotations":[88035,90005,83298],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1905758"}]},"cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of cell division.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of cellular process","termid":"GO:0048522"},{"relation_name":"is_a","term_name":"regulation of cell division","termid":"GO:0051302"},{"relation_name":"positively_regulates","term_name":"cell division","termid":"GO:0051301"}],"gene_count":19,"genes_by_uniquename":{"SJAG_00082":null,"SJAG_00514":null,"SJAG_00845":null,"SJAG_01114":null,"SJAG_01188":null,"SJAG_01787":null,"SJAG_01805":null,"SJAG_02392":null,"SJAG_02838":null,"SJAG_03342":null,"SJAG_03581":null,"SJAG_03631":null,"SJAG_03704":null,"SJAG_03936":null,"SJAG_04468":null,"SJAG_04597":null,"SJAG_04666":null,"SJAG_04776":null,"SJAG_05290":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of cell division","references_by_uniquename":{"GO_REF:0000107":null,"PMID:21873635":null,"PMID:25866389":null},"synonyms":[{"name":"activation of cell division","type":"narrow"},{"name":"stimulation of cell division","type":"narrow"},{"name":"up regulation of cell division","type":"exact"},{"name":"up-regulation of cell division","type":"exact"},{"name":"upregulation of cell division","type":"exact"}],"termid":"GO:0051781","terms_by_termid":{"GO:0140281":null,"GO:1903473":null,"GO:1903501":null,"GO:1903617":null,"GO:1905758":null}}


id: FYPO:0007340
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which a protein localizes to a larger portion of the chromosome than normal in the euchromatic regions.","definition_xrefs":["PMID:18957202","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"altered spatial extent of protein localization to chromatin","termid":"FYPO:0007465"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000138"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0000002","FYPO:0000138","FYPO:0001985","FYPO:0005447"],"is_obsolete":false,"name":"increased spatial extent of protein localization to euchromatin","synonyms":[{"name":"increased spatial extent of protein localisation to euchromatin","type":"exact"},{"name":"increased spatial extent of protein localization to euchromatin during mitotic cell cycle","type":"related"},{"name":"increased spatial extent of protein localization to euchromatin during vegetative growth","type":"exact"}],"termid":"FYPO:0007340"}


id: GO:0006258
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of UDP-glucose, uridinediphosphoglucose, a substance composed of glucose in glycosidic linkage with uridine diphosphate.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"UDP-glucose metabolic process","termid":"GO:0006011"},{"relation_name":"is_a","term_name":"nucleotide-sugar catabolic process","termid":"GO:0009227"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0055086"},{"rel_name":"is_a","termid":"GO:0044248"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0044248","GO:0055086","GO:0044281","GO:0008150"],"is_obsolete":false,"name":"UDP-glucose catabolic process","secondary_identifiers":["GO:0019691"],"synonyms":[{"name":"UDP-glucose degradation","type":"exact"},{"name":"UDP-glucose breakdown","type":"exact"},{"name":"UDP-glucose catabolism","type":"exact"},{"name":"UDP-glucose conversion","type":"related"}],"termid":"GO:0006258"}


id: PBO:0082374
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Basic leucine zipper (bZIP) transcription factor (ATF/CREB1 homolog); regulates the unfolded protein response, via UPRE binding, and membrane biogenesis; ER stress-induced splicing pathway triggers efficient Hac1p translation; two functional forms of Hac1p are produced; translation initiation is repressed under non-stress conditions; protein abundance increases in response to DNA replication stress","termid":"PBO:0082374"}


id: PBO:0068520
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U1 small nuclear 115, pseudogene","termid":"PBO:0068520"}


id: PBO:0087778
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Subunit VIa of cytochrome c oxidase; present in a subclass of cytochrome c oxidase complexes that may have a role in mimimizing generation of reactive oxygen species; not essential for cytochrome c oxidase activity but may modulate activity in response to ATP; required for assembly of Rcf2p into cytochrome c oxidase - cytochrome bc1 supercomplexes","termid":"PBO:0087778"}


id: PR:Q10103
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- chp1 gene.","definition_xrefs":["UniProtKB:Q10103","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chromo domain-containing protein 1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC18G6.02c","synonyms":[{"name":"Spom972h-chp1","type":"exact"}],"termid":"PR:Q10103"}


id: PBO:0003133
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"argininosuccinate lyase","termid":"PBO:0003133"}


id: PBO:0066059
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Rap guanine nucleotide exchange factor 4","termid":"PBO:0066059"}


id: PBO:0013474
data:
  {"annotation_feature_type":"gene","cv_name":"misc","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"trichostatin A partially suppresses wee1delta sensitivity to UV and hydroxyurea","termid":"PBO:0013474"}


id: PBO:0027441
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_minichromosome_loss_during_vegetative_growth","termid":"PBO:0027441"}


id: FYPO:0004712
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of one or more nucleotide metabolism RNAs measured in a cell is lower than normal (i.e. lower than observed in wild-type cells). Nucleotide metabolism RNAs are transcribed from genes whose products are involved in any nucleotide metabolic process.","definition_xrefs":["PMID:18203864","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased RNA level during vegetative growth","termid":"FYPO:0001117"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"output_of","termid":"FYPO:0006551"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0006551","FYPO:0000002","FYPO:0001320","FYPO:0001985","FYPO:0005447"],"is_obsolete":false,"name":"decreased level of nucleotide metabolism gene mRNA during vegetative growth","synonyms":[{"name":"decreased level of nucleotide metabolism gene RNA during vegetative growth","type":"exact"},{"name":"decreased level of nucleotide metabolism gene mRNA during mitotic cell cycle","type":"related"},{"name":"decreased level of nucleotide metabolism gene transcripts during vegetative growth","type":"exact"},{"name":"decreased nucleotide metabolism gene mRNA accumulation during vegetative growth","type":"related"},{"name":"reduced level of nucleotide metabolism gene mRNA during vegetative growth","type":"exact"}],"termid":"FYPO:0004712"}


id: PBO:0068198
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 5S ribosomal pseudogene 505","termid":"PBO:0068198"}


id: PBO:0090587
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TAP42 family TORC1 signalling protein Tap42","termid":"PBO:0090587"}


id: GO:0047002
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: L-arabinitol + NAD+ = L-ribulose + H+ + NADH.","definition_xrefs":["RHEA:21356","EC:1.1.1.13"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor","termid":"GO:0016616"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016491","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"L-arabinitol 2-dehydrogenase activity","secondary_identifiers":["MetaCyc:1.1.1.13-RXN","KEGG_REACTION:R02441"],"synonyms":[{"name":"L-arabinitol 2-dehydrogenase (ribulose forming) activity","type":"exact"}],"termid":"GO:0047002"}


id: PBO:0074301
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SLX1A-SULT1A3 readthrough (NMD candidate)","termid":"PBO:0074301"}


id: FYPO:0008158
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which phosphorylation of serine at position 10 of histone H3 is increased at the silent mating-type locus.","direct_ancestors":[{"relation_name":"is_a","term_name":"increased histone H3-S10 phosphorylation during vegetative growth","termid":"FYPO:0004080"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0002494"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0002274"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0002494","FYPO:0005447","FYPO:0001985","FYPO:0002274","FYPO:0001320"],"is_obsolete":false,"name":"increased histone H3-S10 phosphorylation at the silent mating-type locus during vegetative growth","termid":"FYPO:0008158"}


id: GO:0015288
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Enables the transfer of substances, sized less than 1000 Da, from one side of a membrane to the other. The transmembrane portions of porins consist exclusively of beta-strands which form a beta-barrel. They are found in the outer membranes of Gram-negative bacteria, mitochondria, plastids and possibly acid-fast Gram-positive bacteria.","definition_xrefs":["PMID:10839820","GOC:mtg_transport","TC:1.B.1.-.-","ISBN:0815340729"],"direct_ancestors":[{"relation_name":"is_a","term_name":"wide pore channel activity","termid":"GO:0022829"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0005215","GO:0022857"],"is_obsolete":false,"name":"porin activity","secondary_identifiers":["Wikipedia:Porin_(protein)"],"synonyms":[{"name":"outer membrane exporter porin","type":"narrow"},{"name":"porin","type":"exact"}],"termid":"GO:0015288"}


id: PBO:0063804
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PHKA2 antisense RNA 1","termid":"PBO:0063804"}


id: PBO:0039117
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"axin interactor, dorsalization associated","termid":"PBO:0039117"}


id: GO:0004181
data:
  {"annotated_genes":["SJAG_03586","SJAG_00451"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[62078,90059],"is_not":false,"summary":null,"term":"GO:0004181"}]},"cv_name":"molecular_function","definition":"Catalysis of the hydrolysis of a single C-terminal amino acid residue from a polypeptide chain by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions.","direct_ancestors":[{"relation_name":"is_a","term_name":"carboxypeptidase activity","termid":"GO:0004180"},{"relation_name":"is_a","term_name":"metalloexopeptidase activity","termid":"GO:0008235"}],"gene_count":2,"genes_by_uniquename":{"SJAG_00451":null,"SJAG_03586":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0008233"},{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0140096"}],"interesting_parent_ids":["GO:0140096","GO:0003824","GO:0016787","GO:0008233","GO:0003674"],"is_obsolete":false,"name":"metallocarboxypeptidase activity","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000107":null},"secondary_identifiers":["Reactome:R-HSA-9023159","Reactome:R-HSA-8955712","Reactome:R-HSA-2022379","EC:3.4.17.-","Reactome:R-HSA-8866105","Reactome:R-HSA-9023163","Reactome:R-HSA-2028294","Reactome:R-HSA-2022378","Reactome:R-HSA-8852809"],"termid":"GO:0004181","terms_by_termid":{"GO:0004181":null}}


id: PBO:0031422
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-cell_viability","termid":"PBO:0031422"}


id: GO:0046927
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The racemization of peptidyl-L-threo-threonine at the alpha-carbon to form D-allo-threonine. This is coupled with the formation of the cross-link 2-(S-L-cysteinyl)-D-allo-threonine.","definition_xrefs":["PMID:12696888"],"direct_ancestors":[{"relation_name":"is_a","term_name":"peptidyl-L-amino acid racemization","termid":"GO:0018085"},{"relation_name":"is_a","term_name":"peptidyl-threonine modification","termid":"GO:0018210"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006520"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006520","GO:0008150"],"is_obsolete":false,"name":"peptidyl-threonine racemization","termid":"GO:0046927"}


id: GO:0140592
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: S-adenosyl-L-methionine + (histone H3)-arginine (position 8) = S-adenosyl-L-homocysteine + (histone H3-N-methyl-arginine (position 8). This reaction is the addition of a methyl group to the arginine residue at position 8 of histone H3.","definition_xrefs":["PMID:31533925","PMID:20708585"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein-arginine N-methyltransferase activity","termid":"GO:0016274"},{"relation_name":"is_a","term_name":"histone H3 methyltransferase activity","termid":"GO:0140938"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016741"},{"rel_name":"is_a","termid":"GO:0008276"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0140096"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0008276","GO:0003824","GO:0003674","GO:0016741","GO:0140096","GO:0016740"],"is_obsolete":false,"name":"histone H3R8 methyltransferase activity","synonyms":[{"name":"histone H3R8 arginine methylase activity","type":"exact"},{"name":"histone H3R8 arginine methyltransferase activity","type":"exact"},{"name":"histone methyltransferase activity (H3-R8 specific)","type":"exact"},{"name":"histone-H3R8 methyltransferase activity","type":"exact"}],"termid":"GO:0140592"}


id: SO:0000299
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A location where recombination or occurs during mitosis or meiosis.","direct_ancestors":[{"relation_name":"is_a","term_name":"sequence_rearrangement_feature","termid":"SO:0000669"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"specific_recombination_site","synonyms":[{"name":"specific recombination site","type":"exact"}],"termid":"SO:0000299"}


id: GO:0005957
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"OBSOLETE. (Was not defined before being made obsolete).","definition_xrefs":["GOC:jl"],"gene_count":0,"genotype_count":0,"name":"obsolete debranching enzyme (obsolete GO:0005957)","synonyms":[{"name":"debranching enzyme","type":"exact"}],"termid":"GO:0005957"}


id: PBO:0068856
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 95, pseudogene","termid":"PBO:0068856"}


id: PBO:0000814
data:
  {"annotation_feature_type":"gene","cv_name":"EC numbers","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"2.7.8.-","termid":"PBO:0000814"}


id: PBO:0045640
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"double homeobox 4 like 52 (pseudogene)","termid":"PBO:0045640"}


id: GO:0004450
data:
  {"annotated_genes":["SJAG_04362"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[73416],"is_not":false,"summary":null,"term":"GO:0004450"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: isocitrate + NADP+ = 2-oxoglutarate + CO2 + NADPH.","definition_xrefs":["RHEA:19629"],"direct_ancestors":[{"relation_name":"is_a","term_name":"isocitrate dehydrogenase [NAD(P)+] activity","termid":"GO:0004448"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04362":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016491","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"isocitrate dehydrogenase (NADP+) activity","references_by_uniquename":{"PMID:21873635":null},"secondary_identifiers":["Reactome:R-HSA-389550","EC:1.1.1.42","Reactome:R-HSA-450984","MetaCyc:ISOCITDEH-RXN","Reactome:R-HSA-389540"],"synonyms":[{"name":"NADP isocitric dehydrogenase activity","type":"exact"},{"name":"NADP(+)-ICDH activity","type":"related"},{"name":"NADP(+)-IDH activity","type":"related"},{"name":"NADP(+)-linked isocitrate dehydrogenase activity","type":"exact"},{"name":"NADP-dependent isocitrate dehydrogenase activity","type":"exact"},{"name":"NADP-dependent isocitric dehydrogenase activity","type":"exact"},{"name":"NADP-linked isocitrate dehydrogenase activity","type":"exact"},{"name":"NADP-specific isocitrate dehydrogenase activity","type":"exact"},{"name":"dual-cofactor-specific isocitrate dehydrogenase activity","type":"related"},{"name":"isocitrate (NADP) dehydrogenase activity","type":"exact"},{"name":"isocitrate (nicotinamide adenine dinucleotide phosphate) dehydrogenase activity","type":"exact"},{"name":"isocitrate dehydrogenase (NADP) activity","type":"exact"},{"name":"isocitrate dehydrogenase (NADP-dependent) activity","type":"exact"},{"name":"isocitrate:NADP+ oxidoreductase (decarboxylating)","type":"exact"},{"name":"triphosphopyridine nucleotide-linked isocitrate dehydrogenase activity","type":"exact"}],"termid":"GO:0004450","terms_by_termid":{"GO:0004450":null}}


id: PBO:0063649
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"phosphoglycerate mutase 1 pseudogene 6","termid":"PBO:0063649"}


id: GO:0030073
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The regulated release of proinsulin from secretory granules accompanied by cleavage of proinsulin to form mature insulin. In vertebrates, insulin is secreted from B granules in the B cells of the vertebrate pancreas and from insulin-producing cells in insects.","definition_xrefs":["ISBN:0198506732","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein secretion","termid":"GO:0009306"},{"relation_name":"is_a","term_name":"peptide hormone secretion","termid":"GO:0030072"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"part_of","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0023052","GO:0008150","GO:0051179","GO:0006810"],"is_obsolete":false,"name":"insulin secretion","termid":"GO:0030073"}


id: PR:O74747
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- rhp18 gene.","definition_xrefs":["PRO:DNx","UniProtKB:O74747"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"postreplication repair E3 ubiquitin-protein ligase rad18 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC1734.06","synonyms":[{"name":"RAD18 homolog (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-rhp18","type":"exact"}],"termid":"PR:O74747"}


id: PBO:0016973
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"box H/ACA small nucleolar RNA snR90","termid":"PBO:0016973"}


id: PBO:0036508
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"COP II adaptor Erv29 (predicted)","termid":"PBO:0036508"}


id: GO:1990411
data:
  {"annotated_genes":["SJAG_03856"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[106786],"is_not":false,"summary":null,"term":"GO:1990411"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: hercynylcysteine sulfoxide + 2H+ = ergothioneine + pyruvate + ammonium.","definition_xrefs":["PMID:24828577"],"direct_ancestors":[{"relation_name":"is_a","term_name":"carbon-sulfur lyase activity","termid":"GO:0016846"}],"gene_count":1,"genes_by_uniquename":{"SJAG_03856":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016829"}],"interesting_parent_ids":["GO:0003824","GO:0016829","GO:0003674"],"is_obsolete":false,"name":"hercynylcysteine sulfoxide lyase activity (ergothioneine-forming)","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["MetaCyc:RXN-14428","RHEA:42688"],"termid":"GO:1990411","terms_by_termid":{"GO:1990411":null}}


id: PBO:0042694
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chymotrypsin like elastase 1","termid":"PBO:0042694"}


id: PBO:0048770
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"GEM interacting protein","termid":"PBO:0048770"}


id: GO:2000740
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of mesenchymal stem cell differentiation.","definition_xrefs":["GOC:obol"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of stem cell differentiation","termid":"GO:2000737"},{"relation_name":"is_a","term_name":"regulation of mesenchymal stem cell differentiation","termid":"GO:2000739"},{"relation_name":"negatively_regulates","term_name":"mesenchymal stem cell differentiation","termid":"GO:0072497"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of mesenchymal stem cell differentiation","termid":"GO:2000740"}


id: GO:0035853
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A cellular protein complex localization that acts on a chromosome passenger complex; as a result, the complex is transported to, or maintained in, a specific location at the spindle midzone. A chromosome passenger complex is a protein complex that contains the BIR-domain-containing protein Survivin, Aurora B kinase, INCENP and Borealin, and coordinates various events based on its location to different structures during the course of mitosis. The spindle midzone is the area in the center of the spindle where the spindle microtubules from opposite poles overlap.","definition_xrefs":["PMID:15296749","GOC:mah","GOC:vw"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein-containing complex localization","termid":"GO:0031503"},{"relation_name":"is_a","term_name":"protein localization to cytoskeleton","termid":"GO:0044380"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0051179"],"is_obsolete":false,"name":"chromosome passenger complex localization to spindle midzone","synonyms":[{"name":"CPC complex localization to spindle midzone","type":"exact"},{"name":"CPC localization to spindle midzone","type":"exact"},{"name":"chromosomal passenger complex localization to spindle midzone","type":"exact"},{"name":"chromosome passenger complex localisation to spindle midzone","type":"exact"},{"name":"chromosome passenger complex localization to central spindle","type":"exact"},{"name":"chromosome passenger complex localization to spindle equator","type":"exact"}],"termid":"GO:0035853"}


id: PBO:0070259
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U11 small nuclear 4, pseudogene","termid":"PBO:0070259"}


id: GO:0006601
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of creatine, N-[amino(imino)methyl]-N-methylglycine. Creatine is formed by a process beginning with amidino group transfer from L-arginine to glycine to form guanidinoacetate, followed by methyl group transfer from S-adenosyl-L-methionine to guanidinoacetate; it is then is phosphorylated to form a pool that stores high energy phosphate for the replenishment of ATP during periods of high, or fluctuating energy demand. In animals, most creatine is transported to and used in muscle.","definition_xrefs":["GOC:mah","MetaCyc:GLYCGREAT-PWY","MetaCyc:PWY-6158"],"direct_ancestors":[{"relation_name":"is_a","term_name":"creatine metabolic process","termid":"GO:0006600"},{"relation_name":"is_a","term_name":"cellular modified amino acid biosynthetic process","termid":"GO:0042398"},{"relation_name":"is_a","term_name":"monocarboxylic acid biosynthetic process","termid":"GO:0072330"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0044281"],"is_obsolete":false,"name":"creatine biosynthetic process","synonyms":[{"name":"creatine anabolism","type":"exact"},{"name":"creatine biosynthesis","type":"exact"},{"name":"creatine formation","type":"exact"},{"name":"creatine synthesis","type":"exact"}],"termid":"GO:0006601"}


id: PBO:0052858
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"keratin associated protein 5-1","termid":"PBO:0052858"}


id: PBO:0043881
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CREB/ATF bZIP transcription factor","termid":"PBO:0043881"}


id: PBO:0001484
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"argonaute binding protein 2","termid":"PBO:0001484"}


id: PBO:0056582
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial calcium uniporter","termid":"PBO:0056582"}


id: GO:0106310
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reactions: ATP + protein serine = ADP + protein serine phosphate.","definition_xrefs":["RHEA:17989"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein kinase activity","termid":"GO:0004672"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0140096"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016301"},{"rel_name":"is_a","termid":"GO:0004672"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0004672","GO:0016740","GO:0016301","GO:0003674","GO:0140096","GO:0003824"],"is_obsolete":false,"name":"protein serine kinase activity","secondary_identifiers":["Reactome:R-HSA-9821967","Reactome:R-HSA-9821982","Reactome:R-HSA-9729330"],"synonyms":[{"name":"protein-serine kinase activity","type":"exact"}],"termid":"GO:0106310"}


id: PBO:0003588
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial membrane protein complex assembly protein (predicted)","termid":"PBO:0003588"}


id: PBO:0043284
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"C-type lectin domain family 4 member G pseudogene 1","termid":"PBO:0043284"}


id: GO:0016203
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The developmental process in which a skeletal muscle attaches to its target (such as bone or body wall).","definition_xrefs":["GOC:isa_complete","GOC:sart"],"direct_ancestors":[{"relation_name":"is_a","term_name":"multicellular organismal process","termid":"GO:0032501"},{"relation_name":"part_of","term_name":"skeletal muscle organ development","termid":"GO:0060538"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"muscle attachment","termid":"GO:0016203"}


id: PBO:0077604
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transmembrane serine protease 11F","termid":"PBO:0077604"}


id: PBO:0039551
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ankyrin repeat domain 45","termid":"PBO:0039551"}


id: PBO:0091981
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"meiotic spindle pole body protein Dms1","termid":"PBO:0091981"}


id: PBO:0086241
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein that localizes to the endoplasmic reticulum; also associates with the nuclear pore complex; deletion extends chronological lifespan; highly conserved across species, orthologous to human TMEM33 and paralogous to Pom33p; protein abundance increases in response to DNA replication stress","termid":"PBO:0086241"}


id: PBO:0080912
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"YWHAQ pseudogene 1","termid":"PBO:0080912"}


id: PBO:0076624
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tubulin folding cofactor E like","termid":"PBO:0076624"}


id: GO:0046948
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of hydroxylysine (5-hydroxy-2,6-diaminohexanoic acid), a chiral alpha-amino acid.","definition_xrefs":["ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"aspartate family amino acid catabolic process","termid":"GO:0009068"},{"relation_name":"is_a","term_name":"cellular modified amino acid catabolic process","termid":"GO:0042219"},{"relation_name":"is_a","term_name":"hydroxylysine metabolic process","termid":"GO:0046946"},{"relation_name":"is_a","term_name":"non-proteinogenic amino acid catabolic process","termid":"GO:0170044"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006520"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044248"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0044281","GO:0006520","GO:0008150","GO:0044248"],"is_obsolete":false,"name":"hydroxylysine catabolic process","synonyms":[{"name":"hydroxylysine breakdown","type":"exact"},{"name":"hydroxylysine catabolism","type":"exact"},{"name":"hydroxylysine degradation","type":"exact"}],"termid":"GO:0046948"}


id: PBO:0063561
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PELO antisense RNA 1","termid":"PBO:0063561"}


id: PBO:0017778
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"anaphase-promoting complex TPR lobe subcomplex subunit Apc3","termid":"PBO:0017778"}


id: PBO:0067171
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 225, pseudogene","termid":"PBO:0067171"}


id: PBO:0034677
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abolished_protein_localization_to_nuclear_envelope_during_vegetative_growth","termid":"PBO:0034677"}


id: FYPO:0003024
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which homologous chromosome pairing during meiosis (synapsis) is abnormal. Synapsis is the process in which the side by side pairing and physical juxtaposition of homologous chromosomes is established and maintained. Pairing may be assayed globally or at one or more specific loci.","definition_xrefs":["GO:0007129","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal homologous chromosome segregation","termid":"FYPO:0004159"},{"relation_name":"is_a","term_name":"abnormal meiotic chromosome organization","termid":"FYPO:0006759"},{"relation_name":"is_a","term_name":"abnormal cellular process during meiotic cell cycle","termid":"FYPO:0007260"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"part_of","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000641"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000631"},{"rel_name":"part_of","termid":"FYPO:0001985"},{"rel_name":"part_of","termid":"FYPO:0000631"}],"interesting_parent_ids":["FYPO:0000631","FYPO:0005447","FYPO:0001985","FYPO:0000002","FYPO:0000641"],"is_obsolete":false,"name":"abnormal homologous chromosome pairing","synonyms":[{"name":"abnormal homologous chromosome pairing at meiosis","type":"exact"},{"name":"abnormal synapsis","type":"exact"}],"termid":"FYPO:0003024"}


id: PBO:0036472
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"leucine-rich repeat protein Sog2","termid":"PBO:0036472"}


id: PBO:0063601
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"peroxisomal biogenesis factor 13","termid":"PBO:0063601"}


id: PBO:0066841
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RN7SK pseudogene 141","termid":"PBO:0066841"}


id: PBO:0040905
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"BMS1 pseudogene 9","termid":"PBO:0040905"}


id: GO:0008625
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The series of molecular signals in which a signal is conveyed from the cell surface to trigger the apoptotic death of a cell. The pathway starts with a ligand binding to a death domain receptor on the cell surface, and ends when the execution phase of apoptosis is triggered.","definition_xrefs":["GOC:mah","GOC:mtg_apoptosis"],"direct_ancestors":[{"relation_name":"is_a","term_name":"extrinsic apoptotic signaling pathway","termid":"GO:0097191"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"extrinsic apoptotic signaling pathway via death domain receptors","synonyms":[{"name":"death receptor-mediated apoptosis","type":"narrow"},{"name":"induction of apoptosis via death domain receptors","type":"related"},{"name":"induction of apoptosis via death receptors","type":"exact"}],"termid":"GO:0008625"}


id: FYPO:0006870
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which histone methylation is abnormal. All histone methylation may be affected, or methylation of specific sites on specific histones may be altered.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal histone modification","termid":"FYPO:0006458"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0002494"},{"rel_name":"is_a","termid":"FYPO:0002274"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0002274","FYPO:0001985","FYPO:0002494","FYPO:0000002","FYPO:0005447"],"is_obsolete":false,"name":"abnormal histone methylation","termid":"FYPO:0006870"}


id: PBO:0031311
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_spindle_assembly","termid":"PBO:0031311"}


id: GO:0048328
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of axial mesoderm cell fate specification.","definition_xrefs":["GOC:dgh"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of mesodermal cell fate specification","termid":"GO:0042661"},{"relation_name":"regulates","term_name":"axial mesodermal cell fate specification","termid":"GO:0048327"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of axial mesodermal cell fate specification","termid":"GO:0048328"}


id: PBO:0046634
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"endogenous retrovirus group W member 15","termid":"PBO:0046634"}


id: GO:0002515
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process contributing to anergy in B cells, a state of functional inactivation which is part of B cell tolerance induction.","definition_xrefs":["GOC:jal","ISBN:0781735149"],"direct_ancestors":[{"relation_name":"is_a","term_name":"lymphocyte anergy","termid":"GO:0002249"},{"relation_name":"is_a","term_name":"B cell tolerance induction","termid":"GO:0002514"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"B cell anergy","synonyms":[{"name":"B lymphocyte anergy","type":"exact"},{"name":"B-cell anergy","type":"exact"},{"name":"B-lymphocyte anergy","type":"exact"}],"termid":"GO:0002515"}


id: GO:0061314
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The series of molecular signals initiated by binding of an extracellular ligand to a Notch receptor on the surface of the target cell and contributing to the progression of the heart over time.","definition_xrefs":["GOC:mtg_heart"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Notch signaling pathway","termid":"GO:0007219"},{"relation_name":"is_a","term_name":"cell surface receptor signaling pathway involved in heart development","termid":"GO:0061311"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"Notch signaling involved in heart development","synonyms":[{"name":"Notch signalling involved in heart development","type":"exact"}],"termid":"GO:0061314"}


id: GO:0043265
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"OBSOLETE. Granule free cytoplasm, lying immediately below the plasma membrane.","definition_xrefs":["PMID:12211103","GOC:curators"],"gene_count":0,"genotype_count":0,"name":"obsolete ectoplasm (obsolete GO:0043265)","termid":"GO:0043265"}


id: PBO:0026931
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-elongated_vegetative_cell_with_oscillating_nucleus","termid":"PBO:0026931"}


id: PBO:0089459
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"U2 snRNP-associated protein, WD repeat protein Sap130","termid":"PBO:0089459"}


id: GO:0008538
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the activation of the proteasome, a large multisubunit complex which performs regulated ubiquitin-dependent cytosolic and nuclear proteolysis.","definition_xrefs":["GOC:rn","PMID:10428771"],"gene_count":0,"genotype_count":0,"name":"obsolete proteasome activator activity (obsolete GO:0008538)","synonyms":[{"name":"PA28","type":"narrow"},{"name":"proteasome activator activity","type":"exact"}],"termid":"GO:0008538"}


id: PBO:0031901
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"GRIP domain protein Grp2 (predicted)","termid":"PBO:0031901"}


id: PBO:0044365
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CYCS pseudogene 55","termid":"PBO:0044365"}


id: GO:0032471
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that decreases the concentration of calcium ions in the endoplasmic reticulum.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"endoplasmic reticulum calcium ion homeostasis","termid":"GO:0032469"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0098771"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0098771","GO:0008150"],"is_obsolete":false,"name":"negative regulation of endoplasmic reticulum calcium ion concentration","synonyms":[{"name":"ER calcium ion concentration reduction","type":"exact"},{"name":"endoplasmic reticulum calcium ion concentration reduction","type":"exact"},{"name":"reduction of ER calcium ion concentration","type":"exact"},{"name":"reduction of calcium ion concentration in ER","type":"exact"},{"name":"reduction of calcium ion concentration in endoplasmic reticulum","type":"exact"},{"name":"reduction of endoplasmic reticulum calcium ion concentration","type":"exact"}],"termid":"GO:0032471"}


id: PBO:0078966
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-Ser (AGA) 5-1","termid":"PBO:0078966"}


id: PBO:0056019
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"LSM family member 14B","termid":"PBO:0056019"}


id: PATO:0002141
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A density quality which lacks pattern.","definition_xrefs":["PATOC:GVG"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mass density","termid":"PATO:0001019"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"irregular density","termid":"PATO:0002141"}


id: PBO:0040288
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ATPase Na+/K+ transporting subunit beta 3","termid":"PBO:0040288"}


id: PBO:0088201
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Zinc-regulated transcription factor; binds to zinc-responsive promoters to induce transcription of certain genes in presence of zinc, represses other genes in low zinc; regulates its own transcription; contains seven zinc-finger domains","termid":"PBO:0088201"}


id: PBO:0080018
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ubiquitin specific peptidase 17 like family member 4","termid":"PBO:0080018"}


id: PBO:0017571
data:
  {"annotation_feature_type":"gene","cv_name":"EC numbers","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"3.1.3.96","termid":"PBO:0017571"}


id: PBO:0078299
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-Asp (anticodon GTC) 2-4","termid":"PBO:0078299"}


id: GO:0070769
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A protein complex that consists of an alphaIIb-beta3 integrin complex bound to CIB, a protein that binds calcium as well as the alphaIIb-beta3 integrin.","definition_xrefs":["PMID:9030514"],"direct_ancestors":[{"relation_name":"is_a","term_name":"plasma membrane protein complex","termid":"GO:0098797"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005886"},{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575","GO:0032991","GO:0005886"],"is_obsolete":false,"name":"alphaIIb-beta3 integrin-CIB complex","synonyms":[{"name":"ITGA2B-ITGB3-CIB1 complex","type":"narrow"}],"termid":"GO:0070769"}


id: PBO:0084549
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Member of the REF (RNA and export factor binding proteins) family; when overexpressed, can substitute for the function of Yra1p in export of poly(A)+ mRNA from the nucleus","termid":"PBO:0084549"}


id: GO:0140300
data:
  {"annotated_genes":["SJAG_04588"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[86297],"is_not":false,"summary":null,"term":"GO:0140300"}]},"cv_name":"biological_process","definition":"The process in which serine is transported from the cytosol into the mitochondrial matrix.","definition_xrefs":["PMID:30442778"],"direct_ancestors":[{"relation_name":"is_a","term_name":"amino acid transmembrane transport","termid":"GO:0003333"},{"relation_name":"is_a","term_name":"serine transport","termid":"GO:0032329"},{"relation_name":"is_a","term_name":"import into the mitochondrion","termid":"GO:0170036"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04588":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0055085"}],"interesting_parent_ids":["GO:0006810","GO:0051179","GO:0055085","GO:0008150"],"is_obsolete":false,"name":"serine import into mitochondrion","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0140300","terms_by_termid":{"GO:0140300":null}}


id: PBO:0068531
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U1 small nuclear 132, pseudogene","termid":"PBO:0068531"}


id: PBO:0070112
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U7 small nuclear 26 pseudogene","termid":"PBO:0070112"}


id: GO:0001874
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Combining with (1->3)-beta-D-glucans to initiate an innate immune response.","definition_xrefs":["PMID:14707091"],"direct_ancestors":[{"relation_name":"is_a","term_name":"polysaccharide immune receptor activity","termid":"GO:0001873"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0038023"}],"interesting_parent_ids":["GO:0038023","GO:0003674"],"is_obsolete":false,"name":"(1->3)-beta-D-glucan immune receptor activity","synonyms":[{"name":"(1,3)-beta-D-glucan receptor activity","type":"exact"},{"name":"(1->3)-beta-D-glucan receptor activity","type":"broad"},{"name":"1,3-beta-D-glucan receptor activity","type":"exact"},{"name":"beta-1,3-D-glucan receptor activity","type":"exact"},{"name":"zymosan receptor activity","type":"narrow"}],"termid":"GO:0001874"}


id: GO:0140547
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The acquisition of seed longevity is the ordered series of events during seed development, that prevent embryo deterioration and ROS damage and thus contribute to seed viability over time or in response to adverse environmental conditions. These events include protective (e.g. production of glassy cytoplasm ) and repair (e.g. oxidative stress responses) processes.","definition_xrefs":["PMID:26637538"],"direct_ancestors":[{"relation_name":"is_a","term_name":"reproductive process","termid":"GO:0022414"},{"relation_name":"is_a","term_name":"multicellular organismal process","termid":"GO:0032501"},{"relation_name":"part_of","term_name":"seed development","termid":"GO:0048316"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"acquisition of seed longevity","termid":"GO:0140547"}


id: PATO:0002155
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A rotation quality inhering in a bearer by virtue of being rotated towards the middle of an organism.","definition_xrefs":["PATOC:GVG"],"direct_ancestors":[{"relation_name":"is_a","term_name":"rotated","termid":"PATO:0001599"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"medially rotated","synonyms":[{"name":"internally rotated","type":"exact"}],"termid":"PATO:0002155"}


id: PBO:0065201
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pre-mRNA processing factor 31","termid":"PBO:0065201"}


id: PBO:0005788
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pseudogene wtf element Wtf24","termid":"PBO:0005788"}


id: PBO:0091853
data:
  {"annotation_feature_type":"gene","cv_name":"warning","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"equivalent function in S. cerevisiae is performed by STE12, but this is STE-like, not HMG","termid":"PBO:0091853"}


id: FYPO:0000698
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which the observed rate of DNA-7-methylguanine glycosylase activity is decreased.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased catalytic activity","termid":"FYPO:0000663"},{"relation_name":"is_a","term_name":"abnormal DNA-7-methylguanine glycosylase activity","termid":"FYPO:0000697"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000661"},{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000654"},{"rel_name":"is_a","termid":"FYPO:0000707"}],"interesting_parent_ids":["FYPO:0000652","FYPO:0001985","FYPO:0000707","FYPO:0000661","FYPO:0000654"],"is_obsolete":false,"name":"decreased DNA-7-methylguanine glycosylase activity","synonyms":[{"name":"reduced DNA-7-methylguanine glycosylase activity","type":"exact"}],"termid":"FYPO:0000698"}


id: GO:0097096
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which any suture between facial bones is generated and organized.","definition_xrefs":["Wikipedia:Cranial_sutures","GOC:pr","GOC:sl","Wikipedia:Head_and_neck_anatomy#Musculoskeletal_system"],"direct_ancestors":[{"relation_name":"is_a","term_name":"craniofacial suture morphogenesis","termid":"GO:0097094"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"facial suture morphogenesis","termid":"GO:0097096"}


id: GO:0002315
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which a B cell in the spleen acquires the specialized features of a marginal zone B cell. Marginal zone B cells are localized in a distinct anatomical region of the spleen that represents the major antigen-filtering and scavenging area (by specialized macrophages resident there). It appears that they are preselected to express a BCR repertoire similar to B-1 B cells, biased toward bacterial cell wall constituents and senescent self-components (such as oxidized LDL).","definition_xrefs":["GOC:jal","ISBN:0781735149"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mature B cell differentiation involved in immune response","termid":"GO:0002313"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"marginal zone B cell differentiation","synonyms":[{"name":"marginal zone B cell development","type":"related"},{"name":"marginal zone B lymphocyte differentiation","type":"exact"},{"name":"marginal zone B-cell differentiation","type":"exact"},{"name":"marginal zone B-lymphocyte differentiation","type":"exact"}],"termid":"GO:0002315"}


id: GO:0034597
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate + H2O = 1-phosphatidyl-1D-myo-inositol 3-phosphate + phosphate.","definition_xrefs":["RHEA:25674","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phosphatidylinositol phosphate 4-phosphatase activity","termid":"GO:0034596"},{"relation_name":"is_a","term_name":"phosphatidylinositol-4,5-bisphosphate phosphatase activity","termid":"GO:0106019"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016788"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016787"}],"interesting_parent_ids":["GO:0003674","GO:0016788","GO:0003824","GO:0016787"],"is_obsolete":false,"name":"phosphatidylinositol-4,5-bisphosphate 4-phosphatase activity","secondary_identifiers":["Reactome:R-HSA-6810410","EC:3.1.3.78"],"synonyms":[{"name":"1-phosphatidyl-1D-myo-inositol-4,5-bisphosphate 4-phosphohydrolase activity","type":"exact"},{"name":"phosphatidyl-myo-inositol-4,5-bisphosphate 4-phosphohydrolase activity","type":"exact"}],"termid":"GO:0034597"}


id: GO:0120248
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of an acetylenic compound, any compound which contains a carbon-carbon triple bond (aka C#C).","definition_xrefs":["GOC:krc","DOI:10.1007/978-1-4615-4913-0_3"],"direct_ancestors":[{"relation_name":"is_a","term_name":"acetylenic compound metabolic process","termid":"GO:0120246"},{"relation_name":"is_a","term_name":"organic substance catabolic process","termid":"GO:1901575"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"acetylenic compound catabolic process","synonyms":[{"name":"alkyne substituted compound breakdown","type":"exact"},{"name":"alkyne substituted compound catabolic process","type":"exact"},{"name":"alkyne substituted compound catabolism","type":"exact"},{"name":"alkyne substituted compound degradation","type":"exact"}],"termid":"GO:0120248"}


id: PBO:0071760
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein lateral stalk subunit P1 pseudogene 7","termid":"PBO:0071760"}


id: PBO:0074736
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nucleolar RNA, H/ACA box 94","termid":"PBO:0074736"}


id: GO:0140844
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the transfer of ADP-ribose groups to the glutamate-2 residue of the N-terminal tail of histone H2B (or an equivalent residue).","definition_xrefs":["PMID:27530147"],"direct_ancestors":[{"relation_name":"is_a","term_name":"NAD+-protein-glutamate ADP-ribosyltransferase activity","termid":"GO:0140807"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0140096"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016757"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016740"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016740","GO:0140096","GO:0016757"],"is_obsolete":false,"name":"NAD+-histone H2BE2 glutamate ADP-ribosyltransferase activity","synonyms":[{"name":"NAD+-histone H2B-E2 glutamate ADP-ribosyltransferase activity","type":"exact"},{"name":"NAD+-histone-glutamate ADP-ribosyltransferase activity (H2B-E2 specific)","type":"exact"}],"termid":"GO:0140844"}


id: GO:0060489
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which a lung bud bifurcates parallel to the plane of the previous bud.","definition_xrefs":["GOC:mtg_lung","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"dichotomous subdivision of terminal units involved in lung branching","termid":"GO:0060448"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"planar dichotomous subdivision of terminal units involved in lung branching morphogenesis","termid":"GO:0060489"}


id: GO:0030971
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a receptor that possesses protein tyrosine kinase activity.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"signaling receptor binding","termid":"GO:0005102"},{"relation_name":"is_a","term_name":"protein tyrosine kinase binding","termid":"GO:1990782"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005515"},{"rel_name":"is_a","termid":"GO:0005488"}],"interesting_parent_ids":["GO:0005488","GO:0003674","GO:0005515"],"is_obsolete":false,"name":"receptor tyrosine kinase binding","synonyms":[{"name":"transmembrane receptor protein tyrosine kinase ligand binding","type":"related"}],"termid":"GO:0030971"}


id: PATO:0001014
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0001014 absolute occurence (obsolete PATO:0001014)","termid":"PATO:0001014"}


id: GO:0010460
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency or rate of heart contraction.","definition_xrefs":["GOC:tb","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of heart rate","termid":"GO:0002027"},{"relation_name":"is_a","term_name":"positive regulation of heart contraction","termid":"GO:0045823"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of heart rate","termid":"GO:0010460"}


id: GO:0070582
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A DNA-dependent DNA replication process in which a double-stranded DNA molecule is synthesized from a circular duplex template.","definition_xrefs":["GOC:cb","GOC:mah","ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"DNA-templated DNA replication","termid":"GO:0006261"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006259"},{"rel_name":"is_a","termid":"GO:0006260"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006259","GO:0006260","GO:0008150"],"is_obsolete":false,"name":"theta DNA replication","synonyms":[{"name":"theta replication","type":"exact"}],"termid":"GO:0070582"}


id: PBO:0082029
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"1,3-beta-glucanosyltransferase; involved with Gas4p in spore wall assembly; has similarity to Gas1p","termid":"PBO:0082029"}


id: FYPO:0007384
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the distribution of a protein localized to chromatin along the length of genes that can be transcribed by RNA polymerase II is normal (i.e. indistinguishable from wild type) during a cellular response to oxidative stress.","definition_xrefs":["PMID:28652406","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal protein distribution along RNA polymerase II-transcribed genes","termid":"FYPO:0006021"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0001312"},{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0001312","FYPO:0000002","FYPO:0001320","FYPO:0000257","FYPO:0000138"],"is_obsolete":false,"name":"normal protein distribution along RNA polymerase II-transcribed genes during cellular response to oxidative stress","synonyms":[{"name":"normal protein distribution across RNA polymerase II-transcribed genes during cellular response to oxidative stress","type":"exact"},{"name":"normal protein distribution along RNA polymerase II-regulated genes during cellular response to oxidative stress","type":"exact"},{"name":"normal protein distribution along RNA polymerase II-transcribed genes during cellular response to oxidative stress during mitotic cell cycle","type":"related"},{"name":"normal protein distribution along RNA polymerase II-transcribed genes during cellular response to oxidative stress during vegetative growth","type":"exact"},{"name":"normal protein distribution in chromatin along RNA polymerase II-transcribed genes during cellular response to oxidative stress","type":"exact"},{"name":"normal protein localization to chromatin along RNA polymerase II-transcribed genes during cellular response to oxidative stress","type":"exact"}],"termid":"FYPO:0007384"}


id: PBO:0078656
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-Lys (anticodon CTT) 9-1","termid":"PBO:0078656"}


id: PBO:0086825
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Putative protein of unknown function; YNL050c is not an essential gene","termid":"PBO:0086825"}


id: PBO:0062100
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 4 subfamily A member 50 pseudogene","termid":"PBO:0062100"}


id: GO:0098917
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Cell-cell signaling from post to pre-synapse, across the synaptic cleft.","definition_xrefs":["GOC:dos"],"direct_ancestors":[{"relation_name":"is_a","term_name":"trans-synaptic signaling","termid":"GO:0099537"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"retrograde trans-synaptic signaling","termid":"GO:0098917"}


id: PBO:0086556
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Putative protein of unknown function; conserved among S. cerevisiae strains; YHL005C is not an essential gene","termid":"PBO:0086556"}


id: PR:G2TRJ8
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- cmc4 gene.","definition_xrefs":["PRO:DNx","UniProtKB:G2TRJ8"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Cx9C motif-containing protein 4, mitochondrial (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC4F10.22","synonyms":[{"name":"Spom972h-cmc4","type":"exact"},{"name":"transcripts altered in meiosis protein 2 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:G2TRJ8"}


id: PBO:0050328
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"heterogeneous nuclear ribonucleoprotein A1 pseudogene 30","termid":"PBO:0050328"}


id: GO:0009348
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"OBSOLETE. A homotrimeric protein complex that catalyzes the transfer of a carbamoyl group to ornithine, forming citrulline.","definition_xrefs":["EC:2.1.3.3","GOC:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete ornithine carbamoyltransferase complex (obsolete GO:0009348)","termid":"GO:0009348"}


id: GO:0044520
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process that begins with venom being forced into an organism by the bite or sting of another organism, and ends with the resultant positive regulation of the activity of a vasoactive intestinal polypeptide receptor in the bitten organism.","definition_xrefs":["GOC:jl","GOC:fj"],"direct_ancestors":[{"relation_name":"is_a","term_name":"envenomation resulting in modulation of vasoactive intestinal polypeptide receptor activity in another organism","termid":"GO:0044519"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"envenomation resulting in positive regulation of vasoactive intestinal polypeptide receptor activity in another organism","synonyms":[{"name":"envenomation resulting in positive regulation of VIP receptor activity in other organism","type":"exact"},{"name":"envenomation resulting in positive regulation of vasoactive intestinal polypeptide receptor activity in other organism","type":"exact"}],"termid":"GO:0044520"}


id: PBO:0031868
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mannose-ethanolamine phosphate phosphodiesterase (predicted)","termid":"PBO:0031868"}


id: GO:0042579
data:
  {"annotated_genes":["SJAG_00947","SJAG_02619","SJAG_00891","SJAG_01685","SJAG_01474","SJAG_02848","SJAG_04763","SJAG_00326","SJAG_04315","SJAG_01165","SJAG_03091","SJAG_04299","SJAG_02997","SJAG_00114","SJAG_02630","SJAG_04467","SJAG_04823","SJAG_02384","SJAG_03166","SJAG_00974","SJAG_03493","SJAG_03715","SJAG_00702","SJAG_00706","SJAG_03781","SJAG_02247","SJAG_03324","SJAG_02693","SJAG_04146","SJAG_03440","SJAG_02496","SJAG_01854","SJAG_03671"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[113337,100669,107093,107075,110896,70903],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0005782"},{"annotations":[92500,73278,83959,110897,74783,71690,106486,113226,76936,70930,63523,102047,90991,86107,96772,100606,73114,112353],"is_not":false,"rel_names":["part_of","is_a"],"summary":null,"term":"GO:0005778"},{"annotations":[75671,70417,73226,73910,109141,72229,78384,109919,95320,71387,104915],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0005777"}]},"cv_name":"cellular_component","definition":"Cytoplasmic organelles, spherical or oval in shape, that are bounded by a single membrane and contain oxidative enzymes, especially those utilizing hydrogen peroxide (H2O2).","definition_xrefs":["ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"intracellular membrane-bounded organelle","termid":"GO:0043231"},{"relation_name":"part_of","term_name":"cytoplasm","termid":"GO:0005737"}],"gene_count":33,"genes_by_uniquename":{"SJAG_00114":null,"SJAG_00326":null,"SJAG_00702":null,"SJAG_00706":null,"SJAG_00891":null,"SJAG_00947":null,"SJAG_00974":null,"SJAG_01165":null,"SJAG_01474":null,"SJAG_01685":null,"SJAG_01854":null,"SJAG_02247":null,"SJAG_02384":null,"SJAG_02496":null,"SJAG_02619":null,"SJAG_02630":null,"SJAG_02693":null,"SJAG_02848":null,"SJAG_02997":null,"SJAG_03091":null,"SJAG_03166":null,"SJAG_03324":null,"SJAG_03440":null,"SJAG_03493":null,"SJAG_03671":null,"SJAG_03715":null,"SJAG_03781":null,"SJAG_04146":null,"SJAG_04299":null,"SJAG_04315":null,"SJAG_04467":null,"SJAG_04763":null,"SJAG_04823":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575","GO:0005737"],"is_obsolete":false,"name":"microbody","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000107":null,"PMID:21873635":null},"secondary_identifiers":["Wikipedia:Microbody"],"termid":"GO:0042579","terms_by_termid":{"GO:0005777":null,"GO:0005778":null,"GO:0005782":null}}


id: PBO:0089973
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA polymerase II associated Paf1 complex subunit Leo1","termid":"PBO:0089973"}


id: SO:0000592
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A pseudoknot which contains two stems and at least two loops.","direct_ancestors":[{"relation_name":"is_a","term_name":"pseudoknot","termid":"SO:0000591"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"H_pseudoknot","synonyms":[{"name":"H pseudoknot","type":"exact"},{"name":"H-pseudoknot","type":"exact"},{"name":"H-type pseudoknot","type":"exact"},{"name":"classical pseudoknot","type":"exact"},{"name":"hairpin-type pseudoknot","type":"exact"}],"termid":"SO:0000592"}


id: PBO:0081066
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger DBF-type containing 2","termid":"PBO:0081066"}


id: GO:0010656
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that decreases the rate or frequency of muscle cell apoptotic process, a form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases whose actions dismantle a muscle cell and result in its death.","definition_xrefs":["GOC:dph","GOC:tb","GOC:mtg_apoptosis"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of muscle cell apoptotic process","termid":"GO:0010660"},{"relation_name":"is_a","term_name":"negative regulation of apoptotic process","termid":"GO:0043066"},{"relation_name":"negatively_regulates","term_name":"muscle cell apoptotic process","termid":"GO:0010657"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of muscle cell apoptotic process","synonyms":[{"name":"negative regulation of muscle cell apoptosis","type":"narrow"}],"termid":"GO:0010656"}


id: GO:0034562
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 2,2-bis(4-hydroxyphenyl)-1-propanol + NADH + H+ + O2 = 2,3-bis(4-hydroxyphenyl)-1,2-propanediol + NAD+ + H2O.","definition_xrefs":["UM-BBD_reactionID:r0864"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen","termid":"GO:0016705"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016491","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"2,2-bis(4-hydroxyphenyl)-1-propanol hydroxylase activity","termid":"GO:0034562"}


id: FYPO:0006011
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which mating projection assembly occurs along the lateral portion of the long axis of the cell instead of at one cell end.","definition_xrefs":["PMID:28410370","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal shmoo formation","termid":"FYPO:0000568"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000301"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0005447","FYPO:0000002","FYPO:0000301"],"is_obsolete":false,"name":"shmoo formation at cell side","synonyms":[{"name":"lateral shmoo formation","type":"exact"},{"name":"mating projection assembly at cell side","type":"exact"},{"name":"shmoo formation on cell side","type":"exact"}],"termid":"FYPO:0006011"}


