# terms

id: PBO:0031428
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_glycerol_dehydrogenase_activity","termid":"PBO:0031428"}


id: GO:0090650
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of the deprivation of oxygen and glucose.","definition_xrefs":["GOC:sl","PMID:21525936"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular response to nutrient levels","termid":"GO:0031669"},{"relation_name":"is_a","term_name":"cellular response to decreased oxygen levels","termid":"GO:0036294"},{"relation_name":"is_a","term_name":"response to oxygen-glucose deprivation","termid":"GO:0090649"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cellular response to oxygen-glucose deprivation","synonyms":[{"name":"cellular response to OGD","type":"exact"}],"termid":"GO:0090650"}


id: PBO:0031593
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_premeiotic_DNA_replication","termid":"PBO:0031593"}


id: PBO:0060476
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NANOGNB pseudogene 1","termid":"PBO:0060476"}


id: PBO:0073270
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"septin 7 pseudogene 14","termid":"PBO:0073270"}


id: PBO:0000010
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-localization_dependency","termid":"PBO:0000010"}


id: PBO:0048341
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glyceraldehyde 3 phosphate dehydrogenase pseudogene 52","termid":"PBO:0048341"}


id: PBO:0084018
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Glycosylated integral ER membrane protein of unknown function; forms an ER-membrane associated protein complex with Emp65p; member of the SUN-like family of proteins; genetic interactions suggest a role in folding of ER membrane proteins; required for nuclear envelope localization of Mps3p","termid":"PBO:0084018"}


id: GO:0008141
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. A glue which attaches the pupae to the substrate during metamorphosis, as in, but not restricted to, the true flies (Diptera, ncbi_taxonomy_id:7147).","definition_xrefs":["PMID:825230"],"gene_count":0,"genotype_count":0,"name":"obsolete puparial glue (sensu Diptera) (obsolete GO:0008141)","synonyms":[{"name":"puparial glue (sensu Diptera)","type":"exact"}],"termid":"GO:0008141"}


id: GO:0035919
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process in which an organism stops, prevents or reduces the frequency, rate or extent of the activity of a low voltage-gated calcium channel in another organism. A low voltage-gated channel is a channel whose open state is dependent on low voltage across the membrane in which it is embedded.","definition_xrefs":["ISBN:0815340729","GOC:fj","PMID:20920515","GOC:bf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of voltage-gated calcium channel activity in another organism","termid":"GO:0035918"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of low voltage-gated calcium channel activity in another organism","synonyms":[{"name":"down-regulation of low voltage-gated calcium channel activity in other organism","type":"exact"},{"name":"downregulation of low voltage-gated calcium channel activity in other organism","type":"exact"},{"name":"inhibition of low voltage-gated calcium channel activity in other organism","type":"narrow"},{"name":"negative regulation of low voltage gated calcium channel activity in other organism","type":"exact"},{"name":"negative regulation of low voltage-dependent calcium channel activity in other organism","type":"exact"},{"name":"negative regulation of low voltage-gated calcium channel activity in other organism","type":"exact"}],"termid":"GO:0035919"}


id: PBO:0091587
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glyoxylase III Sdj1","termid":"PBO:0091587"}


id: GO:0140938
data:
  {"annotated_genes":["SJAG_02873","SJAG_00769","SJAG_04574","SJAG_03487"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[91050],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0140955"},{"annotations":[111631],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0062122"},{"annotations":[111673],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0140999"},{"annotations":[105764],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0140948"},{"annotations":[105765],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0140949"},{"annotations":[105766],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0140947"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: S-adenosyl-L-methionine + a histone H3 = S-adenosyl-L-homocysteine + a methylated histone H3. Histone methylation generally occurs on either an arginine or a lysine residue.","definition_xrefs":["PMID:28450737"],"direct_ancestors":[{"relation_name":"is_a","term_name":"histone methyltransferase activity","termid":"GO:0042054"}],"gene_count":4,"genes_by_uniquename":{"SJAG_00769":null,"SJAG_02873":null,"SJAG_03487":null,"SJAG_04574":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008276"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0016741"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0140096"}],"interesting_parent_ids":["GO:0140096","GO:0016740","GO:0016741","GO:0003674","GO:0003824","GO:0008276"],"is_obsolete":false,"name":"histone H3 methyltransferase activity","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["Reactome:R-HSA-3788745","Reactome:R-HSA-5649799","Reactome:R-HSA-5649801","Reactome:R-HSA-5634802","Reactome:R-HSA-5159245","Reactome:R-HSA-5205799","Reactome:R-HSA-5244692","Reactome:R-HSA-5638157","Reactome:R-HSA-8937022","Reactome:R-HSA-5649802","Reactome:R-HSA-3788748","Reactome:R-HSA-5634750","Reactome:R-HSA-5649764","Reactome:R-HSA-4827382","Reactome:R-HSA-5637686","Reactome:R-HSA-5649800","Reactome:R-HSA-8936608","Reactome:R-HSA-8937113","Reactome:R-HSA-5638333","Reactome:R-HSA-5638332","Reactome:R-HSA-5634729","Reactome:R-HSA-5661117","Reactome:R-HSA-8936584","Reactome:R-HSA-5638141","Reactome:R-HSA-4827383"],"synonyms":[{"name":"histone H3 methylase activity","type":"exact"},{"name":"histone H3 methylation","type":"related"}],"termid":"GO:0140938","terms_by_termid":{"GO:0062122":null,"GO:0140947":null,"GO:0140948":null,"GO:0140949":null,"GO:0140955":null,"GO:0140999":null}}


id: FYECO:0000379
data:
  {"annotation_feature_type":"gene","cv_name":"fission_yeast_phenotype_condition","definition":"An experimental condition in which diuron was added to the medium or assay buffer in excess compared to standard medium or assay buffers.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"grouping excess","termid":"FYECO:0000109"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"+ diuron","synonyms":[{"name":"+ 3-(3,4-dichlorophenyl)-1,1-dimethylurea","type":"exact"},{"name":"+ DCMU","type":"exact"},{"name":"+ respiratory chain inhibitor","type":"related"}],"termid":"FYECO:0000379"}


id: GO:1900264
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of DNA-directed DNA polymerase activity.","definition_xrefs":["GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of transferase activity","termid":"GO:0051347"},{"relation_name":"is_a","term_name":"regulation of DNA-directed DNA polymerase activity","termid":"GO:1900262"},{"relation_name":"is_a","term_name":"positive regulation of DNA biosynthetic process","termid":"GO:2000573"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0006260"},{"rel_name":"positively_regulates","termid":"GO:0006259"},{"rel_name":"regulates","termid":"GO:0006259"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006260","GO:0008150","GO:0006259"],"is_obsolete":false,"name":"positive regulation of DNA-directed DNA polymerase activity","synonyms":[{"name":"up regulation of sequenase","type":"related"},{"name":"activation of DNA duplicase activity","type":"exact"},{"name":"activation of DNA nucleotidyltransferase (DNA-directed) activity","type":"exact"},{"name":"activation of DNA polymerase I","type":"narrow"},{"name":"activation of DNA polymerase II","type":"narrow"},{"name":"activation of DNA polymerase III","type":"narrow"},{"name":"activation of DNA polymerase V activity","type":"narrow"},{"name":"activation of DNA polymerase alpha","type":"narrow"},{"name":"activation of DNA polymerase beta","type":"narrow"},{"name":"activation of DNA polymerase gamma","type":"narrow"},{"name":"activation of DNA replicase activity","type":"exact"},{"name":"activation of DNA-dependent DNA polymerase activity","type":"exact"},{"name":"activation of DNA-directed DNA polymerase activity","type":"narrow"},{"name":"activation of Klenow fragment","type":"narrow"},{"name":"activation of Taq DNA polymerase","type":"narrow"},{"name":"activation of Taq Pol I","type":"narrow"},{"name":"activation of Tca DNA polymerase","type":"narrow"},{"name":"activation of alpha DNA polymerase activity","type":"narrow"},{"name":"activation of beta DNA polymerase activity","type":"narrow"},{"name":"activation of delta DNA polymerase activity","type":"narrow"},{"name":"activation of deoxynucleoside-triphosphate:DNA deoxynucleotidyltransferase (DNA-directed) activity","type":"exact"},{"name":"activation of deoxyribonucleic acid duplicase activity","type":"exact"},{"name":"activation of deoxyribonucleic duplicase activity","type":"exact"},{"name":"activation of deoxyribonucleic polymerase I","type":"narrow"},{"name":"activation of duplicase","type":"broad"},{"name":"activation of epsilon DNA polymerase activity","type":"narrow"},{"name":"activation of eta DNA polymerase activity","type":"narrow"},{"name":"activation of gamma DNA-directed DNA polymerase activity","type":"narrow"},{"name":"activation of iota DNA polymerase activity","type":"narrow"},{"name":"activation of kappa DNA polymerase activity","type":"narrow"},{"name":"activation of lambda DNA polymerase activity","type":"narrow"},{"name":"activation of mu DNA polymerase activity","type":"narrow"},{"name":"activation of nu DNA polymerase activity","type":"narrow"},{"name":"activation of sequenase","type":"related"},{"name":"activation of sigma DNA polymerase activity","type":"narrow"},{"name":"activation of theta DNA polymerase activity","type":"narrow"},{"name":"activation of zeta DNA polymerase activity","type":"narrow"},{"name":"positive regulation of DNA duplicase activity","type":"exact"},{"name":"positive regulation of DNA nucleotidyltransferase (DNA-directed) activity","type":"exact"},{"name":"positive regulation of DNA polymerase I","type":"narrow"},{"name":"positive regulation of DNA polymerase II","type":"narrow"},{"name":"positive regulation of DNA polymerase III","type":"narrow"},{"name":"positive regulation of DNA polymerase V activity","type":"narrow"},{"name":"positive regulation of DNA polymerase alpha","type":"narrow"},{"name":"positive regulation of DNA polymerase beta","type":"narrow"},{"name":"positive regulation of DNA polymerase gamma","type":"narrow"},{"name":"positive regulation of DNA replicase activity","type":"exact"},{"name":"positive regulation of DNA-dependent DNA polymerase activity","type":"exact"},{"name":"positive regulation of Klenow fragment","type":"narrow"},{"name":"positive regulation of Taq DNA polymerase","type":"narrow"},{"name":"positive regulation of Taq Pol I","type":"narrow"},{"name":"positive regulation of Tca DNA polymerase","type":"narrow"},{"name":"positive regulation of alpha DNA polymerase activity","type":"narrow"},{"name":"positive regulation of beta DNA polymerase activity","type":"narrow"},{"name":"positive regulation of delta DNA polymerase activity","type":"narrow"},{"name":"positive regulation of deoxynucleoside-triphosphate:DNA deoxynucleotidyltransferase (DNA-directed) activity","type":"exact"},{"name":"positive regulation of deoxyribonucleic acid duplicase activity","type":"exact"},{"name":"positive regulation of deoxyribonucleic duplicase activity","type":"exact"},{"name":"positive regulation of deoxyribonucleic polymerase I","type":"narrow"},{"name":"positive regulation of duplicase","type":"broad"},{"name":"positive regulation of epsilon DNA polymerase activity","type":"narrow"},{"name":"positive regulation of eta DNA polymerase activity","type":"narrow"},{"name":"positive regulation of gamma DNA-directed DNA polymerase activity","type":"narrow"},{"name":"positive regulation of iota DNA polymerase activity","type":"narrow"},{"name":"positive regulation of kappa DNA polymerase activity","type":"narrow"},{"name":"positive regulation of lambda DNA polymerase activity","type":"narrow"},{"name":"positive regulation of mu DNA polymerase activity","type":"narrow"},{"name":"positive regulation of nu DNA polymerase activity","type":"narrow"},{"name":"positive regulation of sequenase","type":"related"},{"name":"positive regulation of sigma DNA polymerase activity","type":"narrow"},{"name":"positive regulation of theta DNA polymerase activity","type":"narrow"},{"name":"positive regulation of zeta DNA polymerase activity","type":"narrow"},{"name":"up regulation of DNA duplicase activity","type":"exact"},{"name":"up regulation of DNA nucleotidyltransferase (DNA-directed) activity","type":"exact"},{"name":"up regulation of DNA polymerase I","type":"narrow"},{"name":"up regulation of DNA polymerase II","type":"narrow"},{"name":"up regulation of DNA polymerase III","type":"narrow"},{"name":"up regulation of DNA polymerase V activity","type":"narrow"},{"name":"up regulation of DNA polymerase alpha","type":"narrow"},{"name":"up regulation of DNA polymerase beta","type":"narrow"},{"name":"up regulation of DNA polymerase gamma","type":"narrow"},{"name":"up regulation of DNA replicase activity","type":"exact"},{"name":"up regulation of DNA-dependent DNA polymerase activity","type":"exact"},{"name":"up regulation of DNA-directed DNA polymerase activity","type":"exact"},{"name":"up regulation of Klenow fragment","type":"narrow"},{"name":"up regulation of Taq DNA polymerase","type":"narrow"},{"name":"up regulation of Taq Pol I","type":"narrow"},{"name":"up regulation of Tca DNA polymerase","type":"narrow"},{"name":"up regulation of alpha DNA polymerase activity","type":"narrow"},{"name":"up regulation of beta DNA polymerase activity","type":"narrow"},{"name":"up regulation of delta DNA polymerase activity","type":"narrow"},{"name":"up regulation of deoxynucleoside-triphosphate:DNA deoxynucleotidyltransferase (DNA-directed) activity","type":"exact"},{"name":"up regulation of deoxyribonucleic acid duplicase activity","type":"exact"},{"name":"up regulation of deoxyribonucleic duplicase activity","type":"exact"},{"name":"up regulation of deoxyribonucleic polymerase I","type":"narrow"},{"name":"up regulation of duplicase","type":"broad"},{"name":"up regulation of epsilon DNA polymerase activity","type":"narrow"},{"name":"up regulation of eta DNA polymerase activity","type":"narrow"},{"name":"up regulation of gamma DNA-directed DNA polymerase activity","type":"narrow"},{"name":"up regulation of iota DNA polymerase activity","type":"narrow"},{"name":"up regulation of kappa DNA polymerase activity","type":"narrow"},{"name":"up regulation of lambda DNA polymerase activity","type":"narrow"},{"name":"up regulation of mu DNA polymerase activity","type":"narrow"},{"name":"up regulation of nu DNA polymerase activity","type":"narrow"},{"name":"up regulation of sigma DNA polymerase activity","type":"narrow"},{"name":"up regulation of theta DNA polymerase activity","type":"narrow"},{"name":"up regulation of zeta DNA polymerase activity","type":"narrow"},{"name":"up-regulation of DNA duplicase activity","type":"exact"},{"name":"up-regulation of DNA nucleotidyltransferase (DNA-directed) activity","type":"exact"},{"name":"up-regulation of DNA polymerase I","type":"narrow"},{"name":"up-regulation of DNA polymerase II","type":"narrow"},{"name":"up-regulation of DNA polymerase III","type":"narrow"},{"name":"up-regulation of DNA polymerase V activity","type":"narrow"},{"name":"up-regulation of DNA polymerase alpha","type":"narrow"},{"name":"up-regulation of DNA polymerase beta","type":"narrow"},{"name":"up-regulation of DNA polymerase gamma","type":"narrow"},{"name":"up-regulation of DNA replicase activity","type":"exact"},{"name":"up-regulation of DNA-dependent DNA polymerase activity","type":"exact"},{"name":"up-regulation of DNA-directed DNA polymerase activity","type":"exact"},{"name":"up-regulation of Klenow fragment","type":"narrow"},{"name":"up-regulation of Taq DNA polymerase","type":"narrow"},{"name":"up-regulation of Taq Pol I","type":"narrow"},{"name":"up-regulation of Tca DNA polymerase","type":"narrow"},{"name":"up-regulation of alpha DNA polymerase activity","type":"narrow"},{"name":"up-regulation of beta DNA polymerase activity","type":"narrow"},{"name":"up-regulation of delta DNA polymerase activity","type":"narrow"},{"name":"up-regulation of deoxynucleoside-triphosphate:DNA deoxynucleotidyltransferase (DNA-directed) activity","type":"exact"},{"name":"up-regulation of deoxyribonucleic acid duplicase activity","type":"exact"},{"name":"up-regulation of deoxyribonucleic duplicase activity","type":"exact"},{"name":"up-regulation of deoxyribonucleic polymerase I","type":"narrow"},{"name":"up-regulation of duplicase","type":"broad"},{"name":"up-regulation of epsilon DNA polymerase activity","type":"narrow"},{"name":"up-regulation of eta DNA polymerase activity","type":"narrow"},{"name":"up-regulation of gamma DNA-directed DNA polymerase activity","type":"narrow"},{"name":"up-regulation of iota DNA polymerase activity","type":"narrow"},{"name":"up-regulation of kappa DNA polymerase activity","type":"narrow"},{"name":"up-regulation of lambda DNA polymerase activity","type":"narrow"},{"name":"up-regulation of mu DNA polymerase activity","type":"narrow"},{"name":"up-regulation of nu DNA polymerase activity","type":"narrow"},{"name":"up-regulation of sequenase","type":"related"},{"name":"up-regulation of sigma DNA polymerase activity","type":"narrow"},{"name":"up-regulation of theta DNA polymerase activity","type":"narrow"},{"name":"up-regulation of zeta DNA polymerase activity","type":"narrow"},{"name":"upregulation of DNA duplicase activity","type":"exact"},{"name":"upregulation of DNA nucleotidyltransferase (DNA-directed) activity","type":"exact"},{"name":"upregulation of DNA polymerase I","type":"narrow"},{"name":"upregulation of DNA polymerase II","type":"narrow"},{"name":"upregulation of DNA polymerase III","type":"narrow"},{"name":"upregulation of DNA polymerase V activity","type":"narrow"},{"name":"upregulation of DNA polymerase alpha","type":"narrow"},{"name":"upregulation of DNA polymerase beta","type":"narrow"},{"name":"upregulation of DNA polymerase gamma","type":"narrow"},{"name":"upregulation of DNA replicase activity","type":"exact"},{"name":"upregulation of DNA-dependent DNA polymerase activity","type":"exact"},{"name":"upregulation of DNA-directed DNA polymerase activity","type":"exact"},{"name":"upregulation of Klenow fragment","type":"narrow"},{"name":"upregulation of Taq DNA polymerase","type":"narrow"},{"name":"upregulation of Taq Pol I","type":"narrow"},{"name":"upregulation of Tca DNA polymerase","type":"narrow"},{"name":"upregulation of alpha DNA polymerase activity","type":"narrow"},{"name":"upregulation of beta DNA polymerase activity","type":"narrow"},{"name":"upregulation of delta DNA polymerase activity","type":"narrow"},{"name":"upregulation of deoxynucleoside-triphosphate:DNA deoxynucleotidyltransferase (DNA-directed) activity","type":"exact"},{"name":"upregulation of deoxyribonucleic acid duplicase activity","type":"exact"},{"name":"upregulation of deoxyribonucleic duplicase activity","type":"exact"},{"name":"upregulation of deoxyribonucleic polymerase I","type":"narrow"},{"name":"upregulation of duplicase","type":"broad"},{"name":"upregulation of epsilon DNA polymerase activity","type":"narrow"},{"name":"upregulation of eta DNA polymerase activity","type":"narrow"},{"name":"upregulation of gamma DNA-directed DNA polymerase activity","type":"narrow"},{"name":"upregulation of iota DNA polymerase activity","type":"narrow"},{"name":"upregulation of kappa DNA polymerase activity","type":"narrow"},{"name":"upregulation of lambda DNA polymerase activity","type":"narrow"},{"name":"upregulation of mu DNA polymerase activity","type":"narrow"},{"name":"upregulation of nu DNA polymerase activity","type":"narrow"},{"name":"upregulation of sequenase","type":"related"},{"name":"upregulation of sigma DNA polymerase activity","type":"narrow"},{"name":"upregulation of theta DNA polymerase activity","type":"narrow"},{"name":"upregulation of zeta DNA polymerase activity","type":"narrow"}],"termid":"GO:1900264"}


id: PATO:0000297
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A quality of a process which ends earlier than the natural end time or reference process.","definition_xrefs":["PATOC:LC"],"direct_ancestors":[{"relation_name":"decreased_in_magnitude_relative_to","term_name":"normal","termid":"PATO:0000461"},{"relation_name":"is_a","term_name":"decreased occurrence","termid":"PATO:0002052"},{"relation_name":"is_a","term_name":"offset quality","termid":"PATO:0002324"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"arrested","secondary_identifiers":["PATO:0001508"],"synonyms":[{"name":"abolished","type":"exact"},{"name":"incomplete","type":"related"}],"termid":"PATO:0000297"}


id: SO:0002292
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"An mRNA that is generated by backsplicing of exons or introns, resulting in a covalently closed loop without a 5’ cap or 3’ polyA tail.","definition_xrefs":["PMID:29182528","PMID:29576969","PMID:29086764"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mRNA","termid":"SO:0000234"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"circular_mRNA","synonyms":[{"name":"circular mRNA","type":"exact"},{"name":"coding circRNA","type":"exact"}],"termid":"SO:0002292"}


id: MOD:01625
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts a glycine residue to 1-thioglycine.","definition_xrefs":["PubMed:9367957","PubMed:11463785","RESID:AA0265"],"direct_ancestors":[{"relation_name":"is_a","term_name":"sulfur substitution for oxygen","termid":"MOD:00749"},{"relation_name":"is_a","term_name":"modified glycine residue","termid":"MOD:00908"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"1-thioglycine","synonyms":[{"name":"1-thioglycine","type":"exact"},{"name":"2-amino-1-sulfanylethanone","type":"exact"},{"name":"Carboxy->Thiocarboxy","type":"related"},{"name":"MOD_RES 1-thioglycine","type":"exact"},{"name":"S(O)Gly","type":"exact"},{"name":"aminoethanethioic acid","type":"exact"},{"name":"aminothioacetic acid","type":"exact"},{"name":"thiocarboxylic acid","type":"related"}],"termid":"MOD:01625"}


id: GO:0010249
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving auxin conjugates, a bound form of auxin.","definition_xrefs":["GOC:sm"],"direct_ancestors":[{"relation_name":"is_a","term_name":"auxin metabolic process","termid":"GO:0009850"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"auxin conjugate metabolic process","synonyms":[{"name":"auxin conjugate metabolism","type":"exact"}],"termid":"GO:0010249"}


id: SO:0000231
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A primary transcript encoding a small nuclear RNA (SO:0000274).","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nc_primary_transcript","termid":"SO:0000483"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"snRNA_primary_transcript","synonyms":[{"name":"snRNA primary transcript","type":"exact"}],"termid":"SO:0000231"}


id: PBO:0072146
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein S15a pseudogene 23","termid":"PBO:0072146"}


id: PBO:0002236
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cytidylyltransferase (predicted)","termid":"PBO:0002236"}


id: GO:0032434
data:
  {"annotated_genes":["SJAG_01533","SJAG_03699","SJAG_02723","SJAG_00052","SJAG_01210","SJAG_00071","SJAG_03048","SJAG_00642","SJAG_02485","SJAG_00475"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[109807],"is_not":false,"summary":null,"term":"GO:0032434"},{"annotations":[97796],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1905785"},{"annotations":[76293,102305],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0032435"},{"annotations":[84671],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1905786"},{"annotations":[104205,106956,112182,97817,76630,102016],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0032436"}]},"cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of ubiquitin, and mediated by the proteasome.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of proteasomal protein catabolic process","termid":"GO:0061136"},{"relation_name":"is_a","term_name":"regulation of ubiquitin-dependent protein catabolic process","termid":"GO:2000058"},{"relation_name":"regulates","term_name":"proteasome-mediated ubiquitin-dependent protein catabolic process","termid":"GO:0043161"}],"gene_count":10,"genes_by_uniquename":{"SJAG_00052":null,"SJAG_00071":null,"SJAG_00475":null,"SJAG_00642":null,"SJAG_01210":null,"SJAG_01533":null,"SJAG_02485":null,"SJAG_02723":null,"SJAG_03048":null,"SJAG_03699":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0030163"}],"interesting_parent_ids":["GO:0008150","GO:0030163"],"is_obsolete":false,"name":"regulation of proteasomal ubiquitin-dependent protein catabolic process","references_by_uniquename":{"GO_REF:0000107":null,"PMID:21873635":null},"termid":"GO:0032434","terms_by_termid":{"GO:0032434":null,"GO:0032435":null,"GO:0032436":null,"GO:1905785":null,"GO:1905786":null}}


id: GO:0102800
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: anthocyanidin 3,5-di-O-beta-D-glucoside + caffeoyl-CoA = pelargonidin 3-O-(6-O-caffeoyl-beta-D-glucoside) 5-O-beta-D-glucoside + coenzyme A.","definition_xrefs":["EC:2.3.1.-","GOC:pz"],"direct_ancestors":[{"relation_name":"is_a","term_name":"acyltransferase activity, transferring groups other than amino-acyl groups","termid":"GO:0016747"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0016746"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016746","GO:0003824","GO:0003674","GO:0016740"],"is_obsolete":false,"name":"caffeoyl-CoA:pelargonidin-3,5-diglucoside-6''-O-acyltransferase activity","secondary_identifiers":["MetaCyc:RXN-8138"],"termid":"GO:0102800"}


id: GO:0097678
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a member of the suppressor of cytokine signaling (SOCS) family of proteins. SOCS represent an important mechanism to extinguish cytokine and growth factor receptor signaling. Individual SOCS proteins are typically induced by specific cytokines and growth factors, thereby generating a negative feedback loop. SOCS proteins have important functions in development and homeostasis, and in disease, particularly tumor suppression and anti-inflammatory functions.","definition_xrefs":["InterPro:IPR028413","PMID:23885323","GOC:mr","PMID:24705897"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein binding","termid":"GO:0005515"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005515"},{"rel_name":"is_a","termid":"GO:0005488"}],"interesting_parent_ids":["GO:0005515","GO:0003674","GO:0005488"],"is_obsolete":false,"name":"SOCS family protein binding","synonyms":[{"name":"suppressor of cytokine signaling family protein binding","type":"exact"}],"termid":"GO:0097678"}


id: PBO:0043448
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"calponin 2 pseudogene 9","termid":"PBO:0043448"}


id: FYPO:0001282
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which any process of chromatin organization is abnormal when the cell is subject to nitrogen starvation. Chromatin organization results in the specification, formation or maintenance of the physical structure of eukaryotic chromatin.","definition_xrefs":["PomBase:mah","GO:0006325"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal chromatin organization","termid":"FYPO:0000642"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000641"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000002","FYPO:0005447","FYPO:0000641"],"is_obsolete":false,"name":"abnormal chromatin organization during nitrogen starvation","synonyms":[{"name":"abnormal chromatin organisation during nitrogen starvation","type":"exact"},{"name":"abnormal chromatin organization during nitrogen depletion","type":"exact"},{"name":"abnormal chromatin organization during nitrogen deprivation","type":"exact"}],"termid":"FYPO:0001282"}


id: PBO:0017922
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CorA family magnesium ion transmembrane transporter (predicted)","termid":"PBO:0017922"}


id: PBO:0081662
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein 585A","termid":"PBO:0081662"}


id: SO:0001759
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A pseudogene, deactivated from original state by mutation, fixed in a population,where the ortholog in a reference species such as mouse remains functional.","definition_xrefs":["GENCODE:http://www.gencodegenes.org/gencode_biotypes.html","SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"non_processed_pseudogene","termid":"SO:0001760"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"unitary_pseudogene","synonyms":[{"name":"INSDC_feature:gene","type":"broad"},{"name":"INSDC_qualifier:unitary","type":"exact"},{"name":"disabled gene","type":"related"},{"name":"unitary pseudogene","type":"related"}],"termid":"SO:0001759"}


id: PBO:0076363
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SZT2 antisense RNA 1","termid":"PBO:0076363"}


id: PBO:0071713
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L39 pseudogene 11","termid":"PBO:0071713"}


id: GO:0047841
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 2-dehydro-D-gluconate + ATP = 6-phospho-2-dehydro-D-gluconate + ADP + 2 H+.","definition_xrefs":["EC:2.7.1.13","RHEA:10788"],"direct_ancestors":[{"relation_name":"is_a","term_name":"kinase activity","termid":"GO:0016301"},{"relation_name":"is_a","term_name":"phosphotransferase activity, alcohol group as acceptor","termid":"GO:0016773"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016301"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016740"}],"interesting_parent_ids":["GO:0016740","GO:0003824","GO:0016301","GO:0003674"],"is_obsolete":false,"name":"dehydrogluconokinase activity","secondary_identifiers":["KEGG_REACTION:R02658","MetaCyc:DEHYDOGLUCONOKINASE-RXN"],"synonyms":[{"name":"2-ketogluconate kinase activity","type":"related"},{"name":"2-ketogluconokinase activity","type":"related"},{"name":"ATP:2-dehydro-D-gluconate 6-phosphotransferase activity","type":"related"},{"name":"dehydogluconokinase activity","type":"exact"},{"name":"ketogluconokinase (phosphorylating)","type":"related"},{"name":"ketogluconokinase activity","type":"related"}],"termid":"GO:0047841"}


id: PBO:0042675
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CEA cell adhesion molecule pseudogene 9","termid":"PBO:0042675"}


id: PBO:0039171
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"A-kinase anchoring protein 3","termid":"PBO:0039171"}


id: PBO:0040031
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ARMCX5-GPRASP2 readthrough","termid":"PBO:0040031"}


id: FYPO:0001769
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the posttranscriptional addition of methyl groups to the C38 residue in a tRNA-Asp molecule, occurs to a greater extent than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal tRNA methylation","termid":"FYPO:0001766"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000294"},{"rel_name":"is_a","termid":"FYPO:0006551"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0001985","FYPO:0001320","FYPO:0000294","FYPO:0006551","FYPO:0000002"],"is_obsolete":false,"name":"increased tRNA-Asp C38 methylation","synonyms":[{"name":"increased tRNA-Asp C38 methylation during mitotic cell cycle","type":"related"},{"name":"increased tRNA-Asp C38 methylation during vegetative growth","type":"exact"},{"name":"increased tRNA-Asp methylation on C38","type":"exact"}],"termid":"FYPO:0001769"}


id: SO:0000257
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A tRNA sequence that has an aspartic acid anticodon, and a 3' aspartic acid binding region.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"derives_from","term_name":"aspartic_acid_tRNA_primary_transcript","termid":"SO:0000214"},{"relation_name":"is_a","term_name":"tRNA","termid":"SO:0000253"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"aspartyl_tRNA","synonyms":[{"name":"aspartyl tRNA","type":"exact"},{"name":"aspartyl-transfer RNA","type":"exact"},{"name":"aspartyl-transfer ribonucleic acid","type":"exact"}],"termid":"SO:0000257"}


id: PBO:0066012
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA guanine-7 methyltransferase activating subunit","termid":"PBO:0066012"}


id: GO:0045302
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 3-alpha,7-alpha,12-alpha-trihydroxy-5-beta-cholan-24-oylglycine + H2O = 3-alpha,7-alpha,12-alpha-trihydroxy-5-beta-cholanate + glycine.","definition_xrefs":["EC:3.5.1.24"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides","termid":"GO:0016811"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016810"},{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016810","GO:0003674","GO:0016787","GO:0003824"],"is_obsolete":false,"name":"choloylglycine hydrolase activity","secondary_identifiers":["MetaCyc:CHOLOYLGLYCINE-HYDROLASE-RXN","RHEA:19353"],"synonyms":[{"name":"3alpha,7alpha,12alpha-trihydroxy-5beta-cholan-24-oylglycine amidohydrolase activity","type":"related"},{"name":"bile salt hydrolase activity","type":"related"},{"name":"choloyltaurine hydrolase activity","type":"related"},{"name":"glycocholase activity","type":"related"}],"termid":"GO:0045302"}


id: PBO:0070841
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L13a pseudogene 20","termid":"PBO:0070841"}


id: PR:O13716
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- agn1 gene.","definition_xrefs":["UniProtKB:O13716","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glucan endo-1,3-alpha-glucosidase agn1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC14C4.09","synonyms":[{"name":"Spom972h-agn1","type":"exact"},{"name":"endo-1,3-alpha-glucanase agn1 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:O13716"}


id: PBO:0082314
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Assembly factor for the F0 sector of mitochondrial F1F0 ATP synthase; mitochondrial inner membrane protein; interacts genetically with ATP6","termid":"PBO:0082314"}


id: PBO:0062181
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 4 subfamily N member 2","termid":"PBO:0062181"}


id: PR:O74352
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A bridging integrator 2 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx","OMA:SCHPO03271"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protein hob1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC21D10.12","secondary_identifiers":["UniProtKB:O74352"],"synonyms":[{"name":"Spom972h-BIN2","type":"exact"},{"name":"homolog of Bin1 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:O74352"}


id: FYPO:0002510
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the palmitoylation of one or more specific proteins, or of specific protein sites, occurs to a greater extent than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased protein modification during vegetative growth","termid":"FYPO:0000547"},{"relation_name":"is_a","term_name":"abnormal protein palmitoylation during vegetative growth","termid":"FYPO:0002506"},{"relation_name":"is_a","term_name":"increased protein palmitoylation","termid":"FYPO:0002509"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0002494"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0002274"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0001320","FYPO:0005447","FYPO:0002274","FYPO:0002494","FYPO:0000002"],"is_obsolete":false,"name":"increased protein palmitoylation during vegetative growth","synonyms":[{"name":"increased protein palmitoylation during mitotic cell cycle","type":"related"}],"termid":"FYPO:0002510"}


id: FYPO:0004730
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which a protein that is not normally found at the lateral cell cortex is observed there. The lateral cell cortex is the region directly beneath the plasma membrane of the lateral portion of the cell.","definition_xrefs":["GO:0097575","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein mislocalized to cytoplasm during vegetative growth","termid":"FYPO:0000783"},{"relation_name":"output_of","term_name":"abnormal protein localization to lateral cell cortex","termid":"FYPO:0007869"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"output_of","termid":"FYPO:0000138"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0000138","FYPO:0000002","FYPO:0005447","FYPO:0001985","FYPO:0001320"],"is_obsolete":false,"name":"protein mislocalized to lateral cell cortex","synonyms":[{"name":"ectopic protein localization to lateral cell cortex","type":"exact"},{"name":"protein mislocalised to lateral cell cortex","type":"exact"},{"name":"protein mislocalised to lateral cell cortex during vegetative growth","type":"exact"},{"name":"protein mislocalized to cell side during vegetative growth","type":"related"},{"name":"protein mislocalized to lateral cell cortex during mitotic cell cycle","type":"related"},{"name":"protein mislocalized to lateral cell cortex during vegetative growth","type":"exact"},{"name":"protein mislocalized to lateral cortex","type":"exact"}],"termid":"FYPO:0004730"}


id: PBO:0000568
data:
  {"annotation_feature_type":"gene","cv_name":"EC numbers","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"2.1.3.2","termid":"PBO:0000568"}


id: GO:0030202
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving heparin, any member of a group of glycosaminoglycans found mainly as an intracellular component of mast cells. They are similar to heparan sulfates but are of somewhat higher average Mr (6000-20000) and contain fewer N-acetyl groups and more N-sulfate and O-sulfate groups; they may be attached in the same manner to protein, forming proteoglycans. They consist predominantly of alternating alpha-(1->4)-linked D-galactose and N-acetyl-D-glucosamine-6-sulfate residues.","definition_xrefs":["ISBN:0198506732","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"sulfur compound metabolic process","termid":"GO:0006790"},{"relation_name":"is_a","term_name":"mucopolysaccharide metabolic process","termid":"GO:1903510"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006790"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006790","GO:0008150"],"is_obsolete":false,"name":"heparin metabolic process","synonyms":[{"name":"heparan sulfate metabolic process","type":"related"},{"name":"heparin metabolism","type":"exact"}],"termid":"GO:0030202"}


id: PATO:0001255
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A color consisting of orange hue and high brightness.","definition_xrefs":["PATOC:GVG"],"direct_ancestors":[{"relation_name":"is_a","term_name":"orange","termid":"PATO:0000953"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"light orange","termid":"PATO:0001255"}


id: GO:1903241
data:
  {"annotated_genes":["SJAG_00313","SJAG_02558","SJAG_00498"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[102120,107678,109060],"is_not":false,"summary":null,"term":"GO:1903241"}]},"cv_name":"biological_process","definition":"The aggregation, arrangement and bonding together of a set of components to form an U2-type prespliceosome.","definition_xrefs":["GO_REF:0000079","GOC:TermGenie","PMID:12374752"],"direct_ancestors":[{"relation_name":"is_a","term_name":"spliceosomal complex assembly","termid":"GO:0000245"}],"gene_count":3,"genes_by_uniquename":{"SJAG_00313":null,"SJAG_00498":null,"SJAG_02558":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0065003"},{"rel_name":"part_of","termid":"GO:0010467"},{"rel_name":"part_of","termid":"GO:0044085"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0016071"}],"interesting_parent_ids":["GO:0008150","GO:0065003","GO:0044085","GO:0016071","GO:0010467"],"is_obsolete":false,"name":"U2-type prespliceosome assembly","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"GT-AG prespliceosome assembly","type":"narrow"},{"name":"GT-AG prespliceosome formation","type":"narrow"},{"name":"U2-type prespliceosome formation","type":"exact"},{"name":"major prespliceosome assembly","type":"exact"},{"name":"major prespliceosome formation","type":"exact"},{"name":"mammalian U2-type spliceosomal complex A assembly","type":"narrow"},{"name":"mammalian U2-type spliceosomal complex A formation","type":"narrow"},{"name":"yeast U2-type spliceosomal complex B assembly","type":"narrow"},{"name":"yeast U2-type spliceosomal complex B formation","type":"narrow"}],"termid":"GO:1903241","terms_by_termid":{"GO:1903241":null}}


id: PBO:0085986
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein of unknown function; required for efficient 5' processing of mitochondrial tRNAs, for respiratory growth and mitochondrial genome maintenance; required for vacuolar acidification; localizes to the matrix side of the inner mitochondrial membrane","termid":"PBO:0085986"}


id: MOD:01637
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively removes or replaces an L-glutamine.","definition_xrefs":["PubMed:18688235"],"direct_ancestors":[{"relation_name":"is_a","term_name":"modified L-glutamine residue","termid":"MOD:00907"},{"relation_name":"is_a","term_name":"natural, standard, encoded residue removal","termid":"MOD:01651"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"L-glutamine removal","termid":"MOD:01637"}


id: PBO:0041927
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chromobox 1 pseudogene 2","termid":"PBO:0041927"}


id: PBO:0054080
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1430","termid":"PBO:0054080"}


id: FYPO:0001616
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of L-valine measured in the cell is lower than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased cellular amino acid level","termid":"FYPO:0003985"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001320","FYPO:0001985"],"is_obsolete":false,"name":"decreased cellular valine level","synonyms":[{"name":"decreased cellular L-valine level","type":"exact"},{"name":"decreased cellular valine level during mitotic cell cycle","type":"related"},{"name":"decreased cellular valine level during vegetative growth","type":"exact"},{"name":"decreased level of valine in cell","type":"exact"},{"name":"reduced cellular valine level","type":"exact"},{"name":"reduced level of valine in cell","type":"exact"}],"termid":"FYPO:0001616"}


id: PBO:0069927
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 1219, pseudogene","termid":"PBO:0069927"}


id: SO:0000306
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A nucleotide modified by methylation.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"modified_DNA_base","termid":"SO:0000305"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"methylated_DNA_base_feature","synonyms":[{"name":"methylated base feature","type":"exact"}],"termid":"SO:0000306"}


id: PBO:0031166
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_glutamate_import_during_vegetative_growth","termid":"PBO:0031166"}


id: PBO:0066988
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RN7SK pseudogene 291","termid":"PBO:0066988"}


id: PBO:0052890
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"keratin associated protein 10-1","termid":"PBO:0052890"}


id: GO:0015713
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which phosphoglycerate is transported across a lipid bilayer, from one side of a membrane to the other.","definition_xrefs":["GOC:krc"],"direct_ancestors":[{"relation_name":"is_a","term_name":"aldonate transmembrane transport","termid":"GO:0042873"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0055085"}],"interesting_parent_ids":["GO:0055085","GO:0051179","GO:0008150","GO:0006810"],"is_obsolete":false,"name":"phosphoglycerate transmembrane transport","synonyms":[{"name":"phosphoglycerate transport","type":"related"}],"termid":"GO:0015713"}


id: GO:1901312
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that stops, prevents or reduces the frequency, rate or extent of gene expression involved in extracellular matrix organization.","definition_xrefs":["GOC:TermGenie","GOC:BHF"],"gene_count":0,"genotype_count":0,"name":"obsolete negative regulation of gene expression involved in extracellular matrix organization (obsolete GO:1901312)","synonyms":[{"name":"down regulation of expression of extracellular matrix proteins","type":"exact"},{"name":"down regulation of extracellular matrix protein production","type":"related"},{"name":"down regulation of gene expression involved in extracellular matrix organization","type":"exact"},{"name":"down-regulation of expression of extracellular matrix proteins","type":"exact"},{"name":"down-regulation of extracellular matrix protein production","type":"related"},{"name":"down-regulation of gene expression involved in extracellular matrix organization","type":"exact"},{"name":"downregulation of expression of extracellular matrix proteins","type":"exact"},{"name":"downregulation of extracellular matrix protein production","type":"related"},{"name":"downregulation of gene expression involved in extracellular matrix organization","type":"exact"},{"name":"inhibition of expression of extracellular matrix proteins","type":"exact"},{"name":"inhibition of extracellular matrix protein production","type":"related"},{"name":"inhibition of gene expression involved in extracellular matrix organization","type":"narrow"},{"name":"negative regulation of expression of extracellular matrix proteins","type":"exact"},{"name":"negative regulation of extracellular matrix protein production","type":"related"}],"termid":"GO:1901312"}


id: MOD:00924
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively crosslinks an L-lysine residue and an L-threonine residue by an isopeptide bond to form N6-(L-threonyl)-L-lysine.","definition_xrefs":["RESID:AA0440","PubMed:18063774"],"direct_ancestors":[{"relation_name":"is_a","term_name":"isopeptide crosslinked residues","termid":"MOD:00688"},{"relation_name":"is_a","term_name":"crosslinked residues with loss of water","termid":"MOD:00954"},{"relation_name":"is_a","term_name":"N6-acylated L-lysine","termid":"MOD:01875"},{"relation_name":"is_a","term_name":"crosslinked L-lysine residue","termid":"MOD:02051"},{"relation_name":"is_a","term_name":"crosslinked L-threonine residue","termid":"MOD:02056"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:00649"}],"interesting_parent_ids":["MOD:00649"],"is_obsolete":false,"name":"N6-(L-threonyl)-L-lysine","synonyms":[{"name":"(2S)-2-amino-6-([(2S,3R)-2-amino-3-hydroxybutanoyl]amino)hexanoic acid","type":"exact"},{"name":"N6-(L-threonyl)-L-lysine","type":"exact"},{"name":"N6-threonyl-lysine","type":"exact"}],"termid":"MOD:00924"}


id: PBO:0040376
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ATP synthase peripheral stalk subunit d pseudogene 4","termid":"PBO:0040376"}


id: GO:0014856
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The multiplication or reproduction of skeletal muscle cells, resulting in the expansion of a cell population.","definition_xrefs":["GOC:mtg_muscle","CL:0000188","GOC:ef"],"direct_ancestors":[{"relation_name":"is_a","term_name":"striated muscle cell proliferation","termid":"GO:0014855"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"skeletal muscle cell proliferation","termid":"GO:0014856"}


id: PBO:0088984
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DNA-binding transcription factor, sterol regulatory element binding protein Sre1","termid":"PBO:0088984"}


id: GO:0072334
data:
  {"annotated_genes":["SJAG_04162","SJAG_01177","SJAG_04697"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[75253],"is_not":false,"summary":null,"term":"GO:0072334"},{"annotations":[110703,84115],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0097624"}]},"cv_name":"biological_process","definition":"The process in which UDP-galactose is transported across a membrane.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"organic anion transport","termid":"GO:0015711"},{"relation_name":"is_a","term_name":"pyrimidine nucleotide-sugar transmembrane transport","termid":"GO:0090481"}],"gene_count":3,"genes_by_uniquename":{"SJAG_01177":null,"SJAG_04162":null,"SJAG_04697":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0055085"},{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0051179","GO:0008150","GO:0055085","GO:0006810"],"is_obsolete":false,"name":"UDP-galactose transmembrane transport","references_by_uniquename":{"GO_REF:0000107":null,"PMID:21873635":null},"secondary_identifiers":["GO:0015785"],"synonyms":[{"name":"UDP-galactose membrane transport","type":"exact"},{"name":"UDP-galactose transport","type":"related"}],"termid":"GO:0072334","terms_by_termid":{"GO:0072334":null,"GO:0097624":null}}


id: GO:1905884
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of triglyceride transport.","definition_xrefs":["GO_REF:0000058","PMID:25849533","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of acylglycerol transport","termid":"GO:1901507"},{"relation_name":"is_a","term_name":"regulation of triglyceride transport","termid":"GO:1905883"},{"relation_name":"negatively_regulates","term_name":"triglyceride transport","termid":"GO:0034197"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"negatively_regulates","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006810","GO:0008150"],"is_obsolete":false,"name":"negative regulation of triglyceride transport","synonyms":[{"name":"down regulation of triacylglycerol transport","type":"exact"},{"name":"down regulation of triglyceride transport","type":"exact"},{"name":"down-regulation of triacylglycerol transport","type":"exact"},{"name":"down-regulation of triglyceride transport","type":"exact"},{"name":"downregulation of triacylglycerol transport","type":"exact"},{"name":"downregulation of triglyceride transport","type":"exact"},{"name":"inhibition of triacylglycerol transport","type":"narrow"},{"name":"inhibition of triglyceride transport","type":"narrow"},{"name":"negative regulation of triacylglycerol transport","type":"exact"}],"termid":"GO:1905884"}


id: GO:0035895
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process in which an organism modulates the frequency, rate or extent of blood mast cell degranulation in another organism. Mast cell degranulation is the regulated exocytosis of secretory granules containing preformed mediators such as histamine, serotonin, and neutral proteases by a mast cell.","definition_xrefs":["GOC:fj","PMID:21549739","GOC:bf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"modulation of process of another organism","termid":"GO:0035821"},{"relation_name":"is_a","term_name":"regulation of mast cell degranulation","termid":"GO:0043304"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0016192"}],"interesting_parent_ids":["GO:0008150","GO:0006810","GO:0016192"],"is_obsolete":false,"name":"modulation of mast cell degranulation in another organism","synonyms":[{"name":"modulation of mast cell degranulation in other organism","type":"exact"},{"name":"regulation of mast cell degranulation in other organism","type":"exact"}],"termid":"GO:0035895"}


id: GO:0010862
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that increases the rate, frequency or extent of pathway-restricted SMAD protein phosphorylation. Pathway-restricted SMAD proteins and common-partner SMAD proteins are involved in the transforming growth factor beta receptor signaling pathways.","definition_xrefs":["GOC:tb","GOC:dph"],"gene_count":0,"genotype_count":0,"name":"obsolete positive regulation of pathway-restricted SMAD protein phosphorylation (obsolete GO:0010862)","termid":"GO:0010862"}


id: PATO:0001482
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A quality inhering in a bearer by virtue of the bearer's standing out or projecting beyond a surface or line.","definition_xrefs":["Dictionary.com:Dictionary.com"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protruding","termid":"PATO:0001598"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"prominent","termid":"PATO:0001482"}


id: PBO:0055223
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2649","termid":"PBO:0055223"}


id: PBO:0083435
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Dubious open reading frame; unlikely to encode a functional protein, based on available experimental and comparative sequence data; partially overlaps the uncharacterized ORF YLR040C","termid":"PBO:0083435"}


id: GO:0061103
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which a relatively unspecialized cell acquires specialized structural and/or functional features of a glomus cell of the carotid body. The carotid body is a specialized chemosensory organ that helps respond to hypoxia.","definition_xrefs":["PMID:6243386","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"neuroendocrine cell differentiation","termid":"GO:0061101"},{"relation_name":"part_of","term_name":"animal organ development","termid":"GO:0048513"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"carotid body glomus cell differentiation","termid":"GO:0061103"}


id: PBO:0045074
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DLG associated protein 2","termid":"PBO:0045074"}


id: PBO:0034084
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-expressed_in","termid":"PBO:0034084"}


id: PBO:0063707
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"phosphoglucomutase 2","termid":"PBO:0063707"}


id: GO:0072019
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of the proximal convoluted tubule over time, from its formation to the mature structure. The proximal convoluted tubule is the most proximal portion of the proximal tubule and extends from the glomerular capsule to the proximal straight tubule.","definition_xrefs":["GOC:mtg_kidney_jan10"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nephron tubule development","termid":"GO:0072080"},{"relation_name":"part_of","term_name":"proximal tubule development","termid":"GO:0072014"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"proximal convoluted tubule development","termid":"GO:0072019"}


id: PATO:0000671
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0000671 water value (obsolete PATO:0000671)","termid":"PATO:0000671"}


id: GO:2000084
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of mesenchymal to epithelial transition involved in mesonephros morphogenesis.","definition_xrefs":["GOC:mtg_kidney_jan10"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of epithelial cell differentiation involved in kidney development","termid":"GO:2000696"},{"relation_name":"regulates","term_name":"mesenchymal to epithelial transition involved in mesonephros morphogenesis","termid":"GO:0061261"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of mesenchymal to epithelial transition involved in mesonephros morphogenesis","synonyms":[{"name":"regulation of mesonephric mesenchyme to epithelial transition","type":"related"}],"termid":"GO:2000084"}


id: GO:0046554
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: (S)-malate + NADP+ = oxaloacetate + NADPH + H+.","definition_xrefs":["EC:1.1.1.82"],"direct_ancestors":[{"relation_name":"is_a","term_name":"malate dehydrogenase activity","termid":"GO:0016615"},{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor","termid":"GO:0016616"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016491"],"is_obsolete":false,"name":"malate dehydrogenase (NADP+) activity","secondary_identifiers":["KEGG_REACTION:R00343","MetaCyc:MALATE-DEHYDROGENASE-NADP+-RXN","RHEA:10824"],"synonyms":[{"name":"(S)-malate:NADP+ oxidoreductase activity","type":"related"},{"name":"NADP malate dehydrogenase activity","type":"related"},{"name":"NADP-linked malate dehydrogenase activity","type":"related"},{"name":"NADP-malate dehydrogenase activity","type":"related"},{"name":"malate NADP dehydrogenase activity","type":"related"},{"name":"malic dehydrogenase (nicotinamide adenine dinucleotide phosphate)","type":"related"}],"termid":"GO:0046554"}


id: PBO:0052239
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"potassium channel tetramerization domain containing 10","termid":"PBO:0052239"}


id: GO:0039584
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process in which a virus stops, prevents, or reduces the frequency, rate or extent of host protein kinase activity.","definition_xrefs":["GOC:bf"],"gene_count":0,"genotype_count":0,"name":"obsolete suppression by virus of host protein kinase activity (obsolete GO:0039584)","termid":"GO:0039584"}


id: GO:0016525
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of angiogenesis.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of angiogenesis","termid":"GO:0045765"},{"relation_name":"is_a","term_name":"negative regulation of blood vessel morphogenesis","termid":"GO:2000181"},{"relation_name":"negatively_regulates","term_name":"angiogenesis","termid":"GO:0001525"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of angiogenesis","synonyms":[{"name":"down regulation of angiogenesis","type":"exact"},{"name":"down-regulation of angiogenesis","type":"exact"},{"name":"downregulation of angiogenesis","type":"exact"},{"name":"inhibition of angiogenesis","type":"narrow"}],"termid":"GO:0016525"}


id: PBO:0065661
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protein tyrosine phosphatase receptor type K","termid":"PBO:0065661"}


id: GO:0010279
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: indole-3-acetic acid + an amino acid = an indole-3-acetic acid amide conjugate.","definition_xrefs":["PMID:15659623"],"direct_ancestors":[{"relation_name":"is_a","term_name":"acid-amino acid ligase activity","termid":"GO:0016881"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016874"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0016874","GO:0003824"],"is_obsolete":false,"name":"indole-3-acetic acid amido synthetase activity","synonyms":[{"name":"IAA amido synthetase activity","type":"exact"},{"name":"IAA amino acid conjugate synthetase activity","type":"exact"},{"name":"IAA amino acid synthetase activity","type":"exact"}],"termid":"GO:0010279"}


id: PBO:0083549
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Dubious open reading frame; unlikely to encode a functional protein, based on available experimental and comparative sequence data; partially overlaps uncharacterized ORF YER067W","termid":"PBO:0083549"}


id: GO:0002020
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a protease or a peptidase.","definition_xrefs":["GOC:hjd"],"direct_ancestors":[{"relation_name":"is_a","term_name":"enzyme binding","termid":"GO:0019899"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005515"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005488"}],"interesting_parent_ids":["GO:0003674","GO:0005488","GO:0005515"],"is_obsolete":false,"name":"protease binding","secondary_identifiers":["Reactome:R-HSA-1297354"],"termid":"GO:0002020"}


id: PBO:0054146
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1513","termid":"PBO:0054146"}


id: FYPO:0000134
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell morphology phenotype observed in the vegetative growth phase of the life cycle in which a cell forms one or more branches near a septum, is elongated, and has more than one septum.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"elongated multiseptate vegetative cell","termid":"FYPO:0000223"},{"relation_name":"is_a","term_name":"branched, elongated, septated cell","termid":"FYPO:0004594"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000005"},{"rel_name":"output_of","termid":"FYPO:0001320"},{"rel_name":"has_part","termid":"FYPO:0000005"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"output_of","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"has_part","termid":"FYPO:0001985"},{"rel_name":"has_part","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0000032"}],"interesting_parent_ids":["FYPO:0000005","FYPO:0000032","FYPO:0000002","FYPO:0001320","FYPO:0000631","FYPO:0001985","FYPO:0005447"],"is_obsolete":false,"name":"branched, elongated, multiseptate cell","synonyms":[{"name":"branched, elongated, multiseptate cell during mitotic cell cycle","type":"related"},{"name":"branched, elongated, multiseptate cell during vegetative growth","type":"exact"},{"name":"branched, long, multiseptate cell","type":"exact"}],"termid":"FYPO:0000134"}


id: GO:0010728
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the rate, frequency or extent of hydrogen peroxide biosynthesis. The chemical reactions and pathways resulting in the formation of hydrogen peroxide (H2O2), a potentially harmful byproduct of aerobic cellular respiration which can cause damage to DNA.","definition_xrefs":["GOC:hjd","GOC:dph","GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of hydrogen peroxide metabolic process","termid":"GO:0010310"},{"relation_name":"is_a","term_name":"regulation of cellular biosynthetic process","termid":"GO:0031326"},{"relation_name":"is_a","term_name":"regulation of reactive oxygen species biosynthetic process","termid":"GO:1903426"},{"relation_name":"regulates","term_name":"hydrogen peroxide biosynthetic process","termid":"GO:0050665"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of hydrogen peroxide biosynthetic process","synonyms":[{"name":"regulation of hydrogen peroxide biosynthesis","type":"exact"}],"termid":"GO:0010728"}


id: PBO:0011431
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"methyltransferase, human Fam119 ortholog (predicted)","termid":"PBO:0011431"}


id: GO:0050115
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: myosin light-chain phosphate + H2O = myosin light chain + phosphate.","definition_xrefs":["EC:3.1.3.53","MetaCyc:MYOSIN-LIGHT-CHAIN-PHOSPHATASE-RXN"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phosphoprotein phosphatase activity","termid":"GO:0004721"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016788"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0140096"},{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0004721"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0004721","GO:0140096","GO:0003824","GO:0003674","GO:0016788","GO:0016787"],"is_obsolete":false,"name":"myosin-light-chain-phosphatase activity","secondary_identifiers":["Reactome:R-HSA-419232"],"synonyms":[{"name":"[Myosin light-chain]-phosphatase activity","type":"exact"},{"name":"myosin light chain kinase phosphatase activity","type":"related"},{"name":"myosin light-chain kinase phosphatase activity","type":"related"},{"name":"myosin-light-chain phosphatase activity","type":"related"},{"name":"myosin-light-chain-phosphate phosphohydrolase activity","type":"related"},{"name":"protein phosphatase 2A","type":"related"}],"termid":"GO:0050115"}


id: GO:0048203
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which vesicles are directed to specific destination membranes during transport from the trans-Golgi to the endosome.","definition_xrefs":["ISBN:0716731363","PMID:10219233","GOC:jid","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"vesicle targeting, to, from or within Golgi","termid":"GO:0048199"},{"relation_name":"part_of","term_name":"Golgi to endosome transport","termid":"GO:0006895"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0006810"},{"rel_name":"part_of","termid":"GO:0016192"}],"interesting_parent_ids":["GO:0006810","GO:0008150","GO:0016192"],"is_obsolete":false,"name":"vesicle targeting, trans-Golgi to endosome","synonyms":[{"name":"trans-Golgi to endosome targeting","type":"exact"}],"termid":"GO:0048203"}


id: GO:0044807
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The appearance of macrophage migration inhibitory factor due to biosynthesis or secretion following a cellular stimulus, resulting in an increase in its intracellular or extracellular levels.","definition_xrefs":["GOC:rv"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cytokine production","termid":"GO:0001816"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0010467","GO:0008150"],"is_obsolete":false,"name":"macrophage migration inhibitory factor production","synonyms":[{"name":"MIF production","type":"exact"}],"termid":"GO:0044807"}


id: GO:0045107
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Assembly of intermediate filaments by the addition of component monomers to a filament. Polymerization of intermediate filament proteins results from interactions among several distinct binding sites on the constituent proteins. Nuclear lamin head-to-tail polymers arise from one such interaction. Deletion analysis localized the binding sites to the ends of the rod domain that are highly conserved among all intermediate filament proteins. Data indicate that one type of interaction in intermediate filament protein polymerization is the longitudinal binding of dimers via the conserved end segments of the coiled-coil rod domain.","definition_xrefs":["GOC:mah","PMID:8776884"],"direct_ancestors":[{"relation_name":"is_a","term_name":"intermediate filament polymerization or depolymerization","termid":"GO:0045105"},{"relation_name":"is_a","term_name":"protein polymerization","termid":"GO:0051258"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0065003"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0044085"},{"rel_name":"part_of","termid":"GO:0007010"}],"interesting_parent_ids":["GO:0007010","GO:0008150","GO:0044085","GO:0065003"],"is_obsolete":false,"name":"intermediate filament polymerization","termid":"GO:0045107"}


id: PBO:0080904
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein epsilon pseudogene 4","termid":"PBO:0080904"}


id: GO:0010215
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a cellulose microfibril, any of the cellulose structures laid down in orthogonal layers in a plant cell wall.","definition_xrefs":["GOC:mah","PMID:12468730"],"direct_ancestors":[{"relation_name":"is_a","term_name":"extracellular matrix organization","termid":"GO:0030198"},{"relation_name":"part_of","term_name":"plant-type cell wall assembly","termid":"GO:0071668"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0044085"},{"rel_name":"part_of","termid":"GO:0071554"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0044085","GO:0071554","GO:0008150"],"is_obsolete":false,"name":"cellulose microfibril organization","synonyms":[{"name":"cellulose microfibril organisation","type":"exact"}],"termid":"GO:0010215"}


id: FYPO:0006674
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype in which the localization of a protein to the nucleus is abolished during conjugation.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abolished protein localization to nucleus","termid":"FYPO:0003450"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0000138","FYPO:0001985","FYPO:0005447","FYPO:0000002"],"is_obsolete":false,"name":"abolished protein localization to nucleus during mating","synonyms":[{"name":"abolished protein localisation to nucleus during mating","type":"exact"},{"name":"abolished protein localization to nucleus during conjugation","type":"exact"},{"name":"nuclear exclusion during mating","type":"related"},{"name":"nuclear protein exclusion during mating","type":"related"},{"name":"protein localization to nucleus abolished during mating","type":"exact"}],"termid":"FYPO:0006674"}


id: PBO:0080411
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"VPS39 subunit of HOPS complex","termid":"PBO:0080411"}


id: PBO:0058542
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 6088","termid":"PBO:0058542"}


id: FYPO:0001919
data:
  {"alleles_by_uniquename":{"SJAG_04464:allele-1":{"allele_type":"amino_acid_mutation","description":"R152C","gene_uniquename":"SJAG_04464","name":"pim1-R152C","synonyms":[{"name":"Inferred CDK-phospho-mimic mutation","reference":"PMID:28954740","type":"exact"}],"uniquename":"SJAG_04464:allele-1"}},"annotation_feature_type":"genotype","cv_annotations":{"single_locus_phenotype":[{"annotations":[114475],"is_not":false,"rel_names":["has_part","is_a"],"summary":null,"term":"FYPO:0003976"}]},"cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the nucleus is broken into multiple small fragments that are smaller than a normal nucleus.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal nuclear morphology during vegetative growth","termid":"FYPO:0000062"},{"relation_name":"is_a","term_name":"fragmented nucleus","termid":"FYPO:0006661"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04464":null},"genotype_count":1,"genotypes_by_uniquename":{"pim1-R152C-R152C-amino_acid_mutation-expression-not_assayed_or_wild_type":{"display_name":"pim1-R152C(aa)","display_uniquename":"pim1-R152C-R152C-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04464:allele-1","expression":"Not assayed or wild type"}]}]}},"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0002403"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"output_of","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0001320","FYPO:0001985","FYPO:0000002","FYPO:0002403"],"is_obsolete":false,"name":"fragmented nucleus during vegetative growth","references_by_uniquename":{"PMID:28954740":null},"single_locus_annotated_genes":["SJAG_04464"],"single_locus_genotype_uniquenames":["pim1-R152C-R152C-amino_acid_mutation-expression-not_assayed_or_wild_type"],"synonyms":[{"name":"fragmented nuclear DNA during vegetative growth","type":"related"},{"name":"fragmented nucleus during mitotic cell cycle","type":"related"},{"name":"loss of nuclear integrity during vegetative growth","type":"related"}],"termid":"FYPO:0001919","terms_by_termid":{"FYECO:0000004":null,"FYPO:0003976":null}}


id: PBO:0054566
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1968","termid":"PBO:0054566"}


id: PBO:0087548
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Subunit of RNA polymerase III transcription initiation factor complex; one of six subunits of RNA polymerase III transcription initiation factor complex (TFIIIC); part of the TauA domain of TFIIIC that binds BoxA DNA promoter sites of tRNA and similar genes; has TPR motifs; human homolog is TFIIIC-102","termid":"PBO:0087548"}


id: PBO:0079271
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TTC39C antisense RNA 1","termid":"PBO:0079271"}


id: PBO:0068696
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U4 small nuclear 77, pseudogene","termid":"PBO:0068696"}


id: SO:0001657
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A binding site that, in the molecule, interacts selectively and non-covalently with a small molecule such as a drug, or hormone.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"binding_site","termid":"SO:0000409"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ligand_binding_site","synonyms":[{"name":"ligand binding site","type":"exact"}],"termid":"SO:0001657"}


id: PBO:0008885
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase family or domain","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mating-type m-specific polypeptide matMc","termid":"PBO:0008885"}


id: SO:0000145
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A codon that has been redefined at translation. The redefinition may be as a result of translational bypass, translational frameshifting or stop codon readthrough.","definition_xrefs":["SO:xp"],"direct_ancestors":[{"relation_name":"is_a","term_name":"codon","termid":"SO:0000360"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"recoded_codon","synonyms":[{"name":"recoded codon","type":"exact"}],"termid":"SO:0000145"}


id: GO:0102700
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: geranyl diphosphate(3-) = alpha-thujene + diphosphoric acid.","definition_xrefs":["EC:4.2.3.-","GOC:pz"],"direct_ancestors":[{"relation_name":"is_a","term_name":"carbon-oxygen lyase activity, acting on phosphates","termid":"GO:0016838"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016829"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016829"],"is_obsolete":false,"name":"alpha-thujene synthase activity","secondary_identifiers":["MetaCyc:RXN-5105"],"termid":"GO:0102700"}


id: PBO:0044624
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"doublecortin domain containing 2B","termid":"PBO:0044624"}


id: GO:0008389
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: coumarin + O2 + NADPH + H+ = hydroxycoumarin + H2O + NADP+.","definition_xrefs":["Reactome:163103"],"direct_ancestors":[{"relation_name":"is_a","term_name":"monooxygenase activity","termid":"GO:0004497"},{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen","termid":"GO:0016705"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016491"],"is_obsolete":false,"name":"coumarin 7-hydroxylase activity","secondary_identifiers":["Reactome:R-HSA-211881","Reactome:R-HSA-76453"],"synonyms":[{"name":"cytochrome P450 CYP2A5","type":"narrow"}],"termid":"GO:0008389"}


id: GO:0086040
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Enables the transfer of a solute or solutes from one side of a cardiac muscle cell membrane to the other according to the reaction: Na+(out) + H+(in) = Na+(in) + H+(out). This transfer contributes to the regulation of the cardiac muscle cell plasma membrane potential.","definition_xrefs":["GOC:BHF","GOC:mtg_cardiac_conduct_nov11"],"direct_ancestors":[{"relation_name":"is_a","term_name":"sodium:proton antiporter activity","termid":"GO:0015385"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0022857"}],"interesting_parent_ids":["GO:0003674","GO:0022857","GO:0005215"],"is_obsolete":false,"name":"sodium:proton antiporter activity involved in regulation of cardiac muscle cell membrane potential","synonyms":[{"name":"sodium:hydrogen antiporter activity involved in regulation of cardiac muscle cell membrane potential","type":"exact"}],"termid":"GO:0086040"}


id: GO:0000054
data:
  {"annotated_genes":["SJAG_04148","SJAG_03658","SJAG_01013","SJAG_01065","SJAG_01449","SJAG_03593","SJAG_01391","SJAG_00753","SJAG_01358","SJAG_03729","SJAG_02274","SJAG_00178","SJAG_02250","SJAG_03299","SJAG_04379","SJAG_02210","SJAG_04940","SJAG_04308","SJAG_03882","SJAG_02757","SJAG_03719","SJAG_04721","SJAG_01338","SJAG_01339","SJAG_00471","SJAG_03012"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[71507,75506,76730,78162,84733,87355,89591,90548,91686,95890,96858,99357,100752,101522,105702,106688],"is_not":false,"summary":null,"term":"GO:0000054"},{"annotations":[76063,75767,112761,111372,95119,78600,101112,75300],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0000055"},{"annotations":[70169,70585,75301,78601],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0000056"}]},"cv_name":"biological_process","definition":"The directed movement of a ribosomal subunit from the nucleus into the cytoplasm.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein-containing complex localization","termid":"GO:0031503"},{"relation_name":"is_a","term_name":"ribosome localization","termid":"GO:0033750"},{"relation_name":"is_a","term_name":"nuclear export","termid":"GO:0051168"},{"relation_name":"is_a","term_name":"establishment of organelle localization","termid":"GO:0051656"},{"relation_name":"part_of","term_name":"ribosome biogenesis","termid":"GO:0042254"}],"gene_count":26,"genes_by_uniquename":{"SJAG_00178":null,"SJAG_00471":null,"SJAG_00753":null,"SJAG_01013":null,"SJAG_01065":null,"SJAG_01338":null,"SJAG_01339":null,"SJAG_01358":null,"SJAG_01391":null,"SJAG_01449":null,"SJAG_02210":null,"SJAG_02250":null,"SJAG_02274":null,"SJAG_02757":null,"SJAG_03012":null,"SJAG_03299":null,"SJAG_03593":null,"SJAG_03658":null,"SJAG_03719":null,"SJAG_03729":null,"SJAG_03882":null,"SJAG_04148":null,"SJAG_04308":null,"SJAG_04379":null,"SJAG_04721":null,"SJAG_04940":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0006913"},{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"part_of","termid":"GO:0044085"},{"rel_name":"part_of","termid":"GO:0042254"}],"interesting_parent_ids":["GO:0006810","GO:0042254","GO:0051179","GO:0006913","GO:0008150","GO:0044085"],"is_obsolete":false,"name":"ribosomal subunit export from nucleus","references_by_uniquename":{"GO_REF:0000107":null,"PMID:21873635":null},"synonyms":[{"name":"ribosomal subunit export from cell nucleus","type":"exact"},{"name":"ribosomal subunit export out of nucleus","type":"exact"},{"name":"ribosomal subunit transport from nucleus to cytoplasm","type":"exact"},{"name":"ribosomal subunit-nucleus export","type":"exact"},{"name":"ribosome export from nucleus","type":"related"}],"termid":"GO:0000054","terms_by_termid":{"GO:0000054":null,"GO:0000055":null,"GO:0000056":null}}


id: PBO:0065285
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"proline rich transmembrane protein 1","termid":"PBO:0065285"}


id: PBO:0028560
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_protein_localization_to_cytoskeleton_during_vegetative_growth","termid":"PBO:0028560"}


id: PBO:0080791
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"XPA, DNA damage recognition and repair factor","termid":"PBO:0080791"}


id: GO:0051763
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of sesquiterpenes, any of a class of terpenes of the formula C15H24 or a derivative of such a terpene.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"terpene catabolic process","termid":"GO:0046247"},{"relation_name":"is_a","term_name":"sesquiterpene metabolic process","termid":"GO:0051761"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044248"},{"rel_name":"is_a","termid":"GO:0006629"}],"interesting_parent_ids":["GO:0008150","GO:0044248","GO:0006629"],"is_obsolete":false,"name":"sesquiterpene catabolic process","termid":"GO:0051763"}


id: PBO:0043461
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CCR4-NOT transcription complex subunit 2","termid":"PBO:0043461"}


id: PBO:0090548
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"40S ribosomal protein S17","termid":"PBO:0090548"}


id: PBO:0075815
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"scavenger receptor cysteine rich family member with 4 domains","termid":"PBO:0075815"}


id: PR:000028934
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A peroxiredoxin tpx1 reduced form in Schizosaccharomyces pombe.","definition_xrefs":["PRO:CNA","PMID:22245228"],"direct_ancestors":[{"relation_name":"is_a","term_name":"peroxiredoxin tpx1","termid":"PR:000028932"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tpx1/Red+","pombase_gene_id":"SPCC576.03c","synonyms":[{"name":"Spom-tpx1/Red+","type":"exact"},{"name":"tpx1/Red+","type":"exact"}],"termid":"PR:000028934"}


id: PBO:0047610
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"formin homology 2 domain containing 1","termid":"PBO:0047610"}


id: GO:0035283
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Division of the central nervous system into a series of semi-repetitive parts or segments.","definition_xrefs":["GOC:bf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"segmentation","termid":"GO:0035282"},{"relation_name":"part_of","term_name":"central nervous system development","termid":"GO:0007417"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"central nervous system segmentation","termid":"GO:0035283"}


id: MOD:01590
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-tryptophan residue to 3'-farnesyl-2',3'-dihydro-2',N2-cyclo-L-tryptophan.","definition_xrefs":["RESID:AA0500","ChEBI:52950","PubMed:18323630"],"direct_ancestors":[{"relation_name":"is_a","term_name":"farnesylated residue","termid":"MOD:00437"},{"relation_name":"is_a","term_name":"cyclized residue","termid":"MOD:00601"},{"relation_name":"is_a","term_name":"isoprenylated tryptophan","termid":"MOD:01115"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"3'-farnesyl-2',3'-dihydro-2',N2-cyclo-L-tryptophan","synonyms":[{"name":"(2S,3aR,8aS)-3a-[(2E,6E)-3,7,11-trimethyldodeca-2,6,10-trien-1-yl]-1,2,3,3a,8,8a-hexahydropyrrolo[2,3-b]indole-2-carboxylic acid","type":"exact"},{"name":"3'-farnesyl-2',3'-dihydro-2',N2-cyclo-L-tryptophan","type":"exact"},{"name":"LIPID 3'-farnesyl-2',N2-cyclotryptophan","type":"exact"}],"termid":"MOD:01590"}


id: PBO:0090002
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial ribosomal protein subunit L13","termid":"PBO:0090002"}


id: PBO:0108959
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase allele types","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nucleotide_deletion_and_mutation","termid":"PBO:0108959"}


id: GO:1905488
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of anterior/posterior axon guidance.","definition_xrefs":["PMID:16516839","GOC:TermGenie","GO_REF:0000058"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of axon guidance","termid":"GO:1902669"},{"relation_name":"is_a","term_name":"regulation of anterior/posterior axon guidance","termid":"GO:1905486"},{"relation_name":"positively_regulates","term_name":"anterior/posterior axon guidance","termid":"GO:0033564"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of anterior/posterior axon guidance","synonyms":[{"name":"activation of anterior-posterior axon guidance","type":"narrow"},{"name":"activation of anterior/posterior axon guidance","type":"narrow"},{"name":"activation of anterior/posterior axon pathfinding","type":"narrow"},{"name":"positive regulation of anterior-posterior axon guidance","type":"exact"},{"name":"positive regulation of anterior/posterior axon pathfinding","type":"exact"},{"name":"up regulation of anterior-posterior axon guidance","type":"exact"},{"name":"up regulation of anterior/posterior axon guidance","type":"exact"},{"name":"up regulation of anterior/posterior axon pathfinding","type":"exact"},{"name":"up-regulation of anterior-posterior axon guidance","type":"exact"},{"name":"up-regulation of anterior/posterior axon guidance","type":"exact"},{"name":"up-regulation of anterior/posterior axon pathfinding","type":"exact"},{"name":"upregulation of anterior-posterior axon guidance","type":"exact"},{"name":"upregulation of anterior/posterior axon guidance","type":"exact"},{"name":"upregulation of anterior/posterior axon pathfinding","type":"exact"}],"termid":"GO:1905488"}


id: PBO:0034488
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_protein_localization_to_chromatin_at_boundary_element_IRC1L","termid":"PBO:0034488"}


id: PBO:0079316
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"testis-specific transcript, Y-linked 8","termid":"PBO:0079316"}


id: PBO:0059539
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrially encoded transcription factor binding site Y","termid":"PBO:0059539"}


id: GO:0016402
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: pristanoyl-CoA + O2 = trans-2,3-dehydropristanoyl-CoA + hydrogen peroxide.","definition_xrefs":["GOC:jsg","RHEA:40459"],"direct_ancestors":[{"relation_name":"is_a","term_name":"acyl-CoA oxidase activity","termid":"GO:0003997"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003824","GO:0016491","GO:0003674"],"is_obsolete":false,"name":"pristanoyl-CoA oxidase activity","secondary_identifiers":["Reactome:R-HSA-389889","Reactome:R-HSA-389891"],"termid":"GO:0016402"}


id: PBO:0055235
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2662","termid":"PBO:0055235"}


id: MOD:01304
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-lysine residue to an N4-hexosaminyl-L-lysine, as a synthetic peptide protectting group.","definition_xrefs":["Unimod:454#K"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hexosaminylated residue","termid":"MOD:00876"},{"relation_name":"is_a","term_name":"modified L-lysine residue","termid":"MOD:00912"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:00693"}],"interesting_parent_ids":["MOD:00693"],"is_obsolete":false,"name":"N6-hexosaminylated lysine","synonyms":[{"name":"HexN","type":"related"},{"name":"Hexosamine","type":"related"}],"termid":"MOD:01304"}


id: PBO:0000310
data:
  {"annotation_feature_type":"gene","cv_name":"name_description","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Meiotically Upregulated Gene","termid":"PBO:0000310"}


id: GO:0007533
data:
  {"annotated_genes":["SJAG_01410","SJAG_03221","SJAG_02226","SJAG_01419","SJAG_01677","SJAG_00998","SJAG_02828","SJAG_05239","SJAG_01076","SJAG_02079","SJAG_03097","SJAG_02724","SJAG_02556","SJAG_00247","SJAG_00073","SJAG_01601","SJAG_03997","SJAG_01495"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[94570],"is_not":false,"summary":null,"term":"GO:0007533"},{"annotations":[101431,103836,105574,101993,106085,96047,92962,111925,113797,94631,83691,91730,110190,84885],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0007534"},{"annotations":[103837,98636],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0071515"},{"annotations":[77416,88957],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0071171"}]},"cv_name":"biological_process","definition":"The conversion of a single-cell organism from one mating type to another by the precise replacement of a DNA sequence at the expressed mating type locus with a copy of a sequence from a donor locus.","definition_xrefs":["PMID:9928492"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mating type determination","termid":"GO:0007531"},{"relation_name":"is_a","term_name":"reproductive process in single-celled organism","termid":"GO:0022413"}],"gene_count":18,"genes_by_uniquename":{"SJAG_00073":null,"SJAG_00247":null,"SJAG_00998":null,"SJAG_01076":null,"SJAG_01410":null,"SJAG_01419":null,"SJAG_01495":null,"SJAG_01601":null,"SJAG_01677":null,"SJAG_02079":null,"SJAG_02226":null,"SJAG_02556":null,"SJAG_02724":null,"SJAG_02828":null,"SJAG_03097":null,"SJAG_03221":null,"SJAG_03997":null,"SJAG_05239":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"mating type switching","references_by_uniquename":{"GO_REF:0000107":null,"PMID:21873635":null},"synonyms":[{"name":"mating type switching and recombination","type":"related"}],"termid":"GO:0007533","terms_by_termid":{"GO:0007533":null,"GO:0007534":null,"GO:0071171":null,"GO:0071515":null}}


id: GO:0099180
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The directed movement of Zn2+ ions from the cytoplasm into the lumen of a cytoplasmic vesicle.","definition_xrefs":["PMID:9990090"],"direct_ancestors":[{"relation_name":"is_a","term_name":"zinc ion import into organelle","termid":"GO:0062111"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0055085"},{"rel_name":"is_a","termid":"GO:0051179"}],"interesting_parent_ids":["GO:0006810","GO:0008150","GO:0055085","GO:0051179"],"is_obsolete":false,"name":"zinc ion import into synaptic vesicle","synonyms":[{"name":"Zn2+ import into synaptic vesicle","type":"exact"},{"name":"zinc import into synaptic vesicle","type":"exact"}],"termid":"GO:0099180"}


id: GO:0098594
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A secretory granule that contains mucin.","definition_xrefs":["PMID:16377632"],"direct_ancestors":[{"relation_name":"is_a","term_name":"secretory granule","termid":"GO:0030141"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"is_a","termid":"GO:0031410"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0031410","GO:0005575","GO:0005737"],"is_obsolete":false,"name":"mucin granule","termid":"GO:0098594"}


id: PATO:0000713
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0000713 relative time value (obsolete PATO:0000713)","termid":"PATO:0000713"}


id: GO:0031890
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a vasoactive intestinal polypeptide receptor.","definition_xrefs":["GOC:nln","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"neuropeptide receptor binding","termid":"GO:0071855"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005515"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005488"}],"interesting_parent_ids":["GO:0003674","GO:0005488","GO:0005515"],"is_obsolete":false,"name":"vasoactive intestinal polypeptide receptor binding","synonyms":[{"name":"VIP receptor binding","type":"exact"},{"name":"vasoactive intestinal polypeptide receptor ligand","type":"narrow"}],"termid":"GO:0031890"}


id: PBO:0069287
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 543, pseudogene","termid":"PBO:0069287"}


id: PBO:0080353
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"vomeronasal 2 receptor 7 pseudogene","termid":"PBO:0080353"}


id: GO:0075232
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that activates, maintains or increases the frequency, rate or extent of spore movement on or near its host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction.","definition_xrefs":["GOC:pamgo_curators"],"gene_count":0,"genotype_count":0,"name":"obsolete positive regulation of spore movement on or near host (obsolete GO:0075232)","termid":"GO:0075232"}


id: PBO:0052974
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"L3MBTL histone methyl-lysine binding protein 4","termid":"PBO:0052974"}


id: SO:0002266
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"LTR retrotransposons in the Bel-Pao superfamily are similar to LTRs in the Gypsy and Retrovirus superfamilies. Mainly described in metazoan genomes, this superfamily contain elements coding for specific proteins in this order: GAG, AP, RT, RH and INT. GAG is a structural protein for virus-like particles. AP is aspartic proteinase. INT is a DDE integrase. RT is a reverse transcriptase. RH is RNAse H.","definition_xrefs":["PMID:17984973"],"direct_ancestors":[{"relation_name":"is_a","term_name":"LTR_retrotransposon","termid":"SO:0000186"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Bel_Pao_LTR_retrotransposon","synonyms":[{"name":"Bel Pao LTR retrotransposon","type":"exact"},{"name":"Bel-Pao LTR retrotransposon","type":"exact"},{"name":"RLB retrotransposon","type":"exact"}],"termid":"SO:0002266"}


id: PBO:0086066
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein of unknown function that interacts with Sec72p and Hrr25p","termid":"PBO:0086066"}


id: PBO:0089391
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"translation initiation regulator, HEAT repeat protein Gcn1","termid":"PBO:0089391"}


id: PBO:0042039
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"coiled-coil domain containing 91","termid":"PBO:0042039"}


id: GO:0010097
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which a floral organ primordium acquires stamen or staminode identity. Identity is considered to be the aggregate of characteristics by which a structure is recognized.","definition_xrefs":["GOC:tair_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"specification of floral organ identity","termid":"GO:0010093"},{"relation_name":"part_of","term_name":"stamen formation","termid":"GO:0048455"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"specification of stamen identity","termid":"GO:0010097"}


id: PBO:0077585
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tropomodulin 4","termid":"PBO:0077585"}


id: MOD:01894
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively replaces a hydrogen atom with an propanoyl group.","definition_xrefs":["PubMed:11999733","PubMed:11857757","Unimod:58","PubMed:12175151"],"direct_ancestors":[{"relation_name":"is_a","term_name":"acylated residue","termid":"MOD:00649"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:00649"}],"interesting_parent_ids":["MOD:00649"],"is_obsolete":false,"name":"propanoylated residue","synonyms":[{"name":"Propionate labeling reagent light form (N-term & K)","type":"related"},{"name":"Propionyl","type":"related"}],"termid":"MOD:01894"}


id: GO:0019209
data:
  {"annotated_genes":["SJAG_03936","SJAG_02785","SJAG_00318","SJAG_04200","SJAG_00142","SJAG_02332","SJAG_03695","SJAG_04140","SJAG_00296","SJAG_02026","SJAG_01411","SJAG_00333","SJAG_04509","SJAG_00457","SJAG_03453","SJAG_04502","SJAG_01213","SJAG_04020","SJAG_00236","SJAG_04614","SJAG_03371","SJAG_02057","SJAG_01401","SJAG_05017","SJAG_03699","SJAG_02605","SJAG_01605","SJAG_00439","SJAG_03618","SJAG_02232","SJAG_03340","SJAG_03090"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[86866],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0098744"},{"annotations":[107329,78400,106453,70609,108186,73749,112184,97091],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0061575"},{"annotations":[72154,70621,86952,72738,106683,107710,70420,102492,111462,94697,77263,84936],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0030295"},{"annotations":[105819,86523,113417,86836,83669,95463,74939,104571,74725,84951,100492],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0043539"}]},"cv_name":"molecular_function","definition":"Binds to and increases the activity of a kinase, an enzyme which catalyzes of the transfer of a phosphate group, usually from ATP, to a substrate molecule.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"enzyme activator activity","termid":"GO:0008047"},{"relation_name":"is_a","term_name":"kinase regulator activity","termid":"GO:0019207"}],"gene_count":32,"genes_by_uniquename":{"SJAG_00142":null,"SJAG_00236":null,"SJAG_00296":null,"SJAG_00318":null,"SJAG_00333":null,"SJAG_00439":null,"SJAG_00457":null,"SJAG_01213":null,"SJAG_01401":null,"SJAG_01411":null,"SJAG_01605":null,"SJAG_02026":null,"SJAG_02057":null,"SJAG_02232":null,"SJAG_02332":null,"SJAG_02605":null,"SJAG_02785":null,"SJAG_03090":null,"SJAG_03340":null,"SJAG_03371":null,"SJAG_03453":null,"SJAG_03618":null,"SJAG_03695":null,"SJAG_03699":null,"SJAG_03936":null,"SJAG_04020":null,"SJAG_04140":null,"SJAG_04200":null,"SJAG_04502":null,"SJAG_04509":null,"SJAG_04614":null,"SJAG_05017":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0140677"},{"rel_name":"is_a","termid":"GO:0030234"},{"rel_name":"is_a","termid":"GO:0098772"}],"interesting_parent_ids":["GO:0140677","GO:0030234","GO:0003674","GO:0098772"],"is_obsolete":false,"name":"kinase activator activity","references_by_uniquename":{"GO_REF:0000107":null,"PMID:21873635":null},"termid":"GO:0019209","terms_by_termid":{"GO:0030295":null,"GO:0043539":null,"GO:0061575":null,"GO:0098744":null}}


id: PBO:0088016
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Type I membrane protein with a J domain; required to preserve the folding capacity of the endoplasmic reticulum; loss of the non-essential ERJ5 gene leads to a constitutively induced unfolded protein response","termid":"PBO:0088016"}


id: PBO:0083100
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DNA-dependent ATPase that stimulates strand exchange; modifies the topology of double-stranded DNA; involved in the recombinational repair of double-strand breaks in DNA during vegetative growth and meiosis; member of the SWI/SNF family of DNA translocases; forms nuclear foci upon DNA replication stress","termid":"PBO:0083100"}


id: PBO:0004598
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase family or domain","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zf-MYND type","termid":"PBO:0004598"}


id: GO:2000653
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that modulates the frequency, rate or extent of genetic imprinting.","definition_xrefs":["GOC:BHF"],"gene_count":0,"genotype_count":0,"name":"obsolete regulation of genetic imprinting (obsolete GO:2000653)","synonyms":[{"name":"regulation of DNA imprinting","type":"exact"}],"termid":"GO:2000653"}


id: PBO:0043354
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"clarin 1","termid":"PBO:0043354"}


id: GO:0047801
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: L-cysteine + 2-oxoglutarate = mercaptopyruvate + L-glutamate.","definition_xrefs":["RHEA:17441"],"direct_ancestors":[{"relation_name":"is_a","term_name":"transaminase activity","termid":"GO:0008483"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016769"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0016740","GO:0016769","GO:0003824"],"is_obsolete":false,"name":"L-cysteine transaminase activity","secondary_identifiers":["MetaCyc:CYSTEINE-AMINOTRANSFERASE-RXN","EC:2.6.1.3","Reactome:R-HSA-9012597"],"synonyms":[{"name":"L-cysteine:2-oxoglutarate aminotransferase activity","type":"exact"},{"name":"cysteine aminotransferase activity","type":"broad"},{"name":"cysteine transaminase activity","type":"exact"}],"termid":"GO:0047801"}


id: GO:0103023
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: ITP + H2O = IDP + H+ + phosphate.","definition_xrefs":["RHEA:28330","GOC:pz","PMID:16216582"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ribonucleoside triphosphate phosphatase activity","termid":"GO:0017111"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016787","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"ITPase activity","secondary_identifiers":["MetaCyc:RXN0-5073","EC:3.6.1.73"],"termid":"GO:0103023"}


id: PBO:0072004
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein S7 pseudogene 6","termid":"PBO:0072004"}


id: PBO:0056782
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mex-3 RNA binding family member D","termid":"PBO:0056782"}


id: GO:0030515
data:
  {"annotated_genes":["SJAG_05186","SJAG_02300","SJAG_05187","SJAG_00572","SJAG_00344","SJAG_03028","SJAG_03846","SJAG_02530","SJAG_02662","SJAG_03341","SJAG_02377","SJAG_02702","SJAG_04069","SJAG_04908","SJAG_04224","SJAG_00945","SJAG_01764","SJAG_03569","SJAG_00566","SJAG_02025","SJAG_03252","SJAG_00559","SJAG_01907","SJAG_03654","SJAG_02608","SJAG_04754","SJAG_03156","SJAG_04339","SJAG_03125","SJAG_00897","SJAG_02372","SJAG_00879","SJAG_00744","SJAG_04424","SJAG_01234","SJAG_00083"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[71091,73008,74848,75242,75286,78093,78349,78741,84956,86959,87674,88244,94038,96226,97034,101345,101580,103374,103927,105019,105384,105843,106313,107021,107243,108746,109113],"is_not":false,"summary":null,"term":"GO:0030515"},{"annotations":[74044,96632,85711,90919],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0034513"},{"annotations":[76885,73843,91294,75110,77113],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0034511"}]},"cv_name":"molecular_function","definition":"Binding to a small nucleolar RNA.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"RNA binding","termid":"GO:0003723"}],"gene_count":36,"genes_by_uniquename":{"SJAG_00083":null,"SJAG_00344":null,"SJAG_00559":null,"SJAG_00566":null,"SJAG_00572":null,"SJAG_00744":null,"SJAG_00879":null,"SJAG_00897":null,"SJAG_00945":null,"SJAG_01234":null,"SJAG_01764":null,"SJAG_01907":null,"SJAG_02025":null,"SJAG_02300":null,"SJAG_02372":null,"SJAG_02377":null,"SJAG_02530":null,"SJAG_02608":null,"SJAG_02662":null,"SJAG_02702":null,"SJAG_03028":null,"SJAG_03125":null,"SJAG_03156":null,"SJAG_03252":null,"SJAG_03341":null,"SJAG_03569":null,"SJAG_03654":null,"SJAG_03846":null,"SJAG_04069":null,"SJAG_04224":null,"SJAG_04339":null,"SJAG_04424":null,"SJAG_04754":null,"SJAG_04908":null,"SJAG_05186":null,"SJAG_05187":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003723"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0005488","GO:0003674","GO:0003723"],"is_obsolete":false,"name":"snoRNA binding","references_by_uniquename":{"GO_REF:0000107":null,"PMID:21873635":null},"termid":"GO:0030515","terms_by_termid":{"GO:0030515":null,"GO:0034511":null,"GO:0034513":null}}


id: GO:0120086
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 2-trans,6-trans-farnesyl diphosphate = diphosphate + (3S)-(+)-asterisca-2(9),6-diene.","definition_xrefs":["PMID:27862766"],"direct_ancestors":[{"relation_name":"is_a","term_name":"sesquiterpene synthase activity","termid":"GO:0010334"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016829"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0016829","GO:0003824"],"is_obsolete":false,"name":"(3S)-(+)-asterisca-2(9),6-diene synthase activity","synonyms":[{"name":"asterisca-2(9),6-diene synthase activity","type":"broad"}],"termid":"GO:0120086"}


id: SO:0001684
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"An attribute of an experimentally derived feature.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"feature_attribute","termid":"SO:0000733"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"experimental_feature_attribute","synonyms":[{"name":"experimental feature attribute","type":"related"}],"termid":"SO:0001684"}


id: GO:1902661
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of glucose mediated signaling pathway.","definition_xrefs":["GO_REF:0000058","GOC:di","GOC:TermGenie","PMID:24277933"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of signal transduction","termid":"GO:0009967"},{"relation_name":"is_a","term_name":"regulation of glucose mediated signaling pathway","termid":"GO:1902659"},{"relation_name":"positively_regulates","term_name":"glucose mediated signaling pathway","termid":"GO:0010255"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"positively_regulates","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"positive regulation of glucose mediated signaling pathway","synonyms":[{"name":"activation of glucose mediated signaling pathway","type":"narrow"},{"name":"activation of glucose mediated signalling","type":"narrow"},{"name":"positive regulation of glucose mediated signalling","type":"exact"},{"name":"up regulation of glucose mediated signaling pathway","type":"exact"},{"name":"up regulation of glucose mediated signalling","type":"exact"},{"name":"up-regulation of glucose mediated signaling pathway","type":"exact"},{"name":"up-regulation of glucose mediated signalling","type":"exact"},{"name":"upregulation of glucose mediated signaling pathway","type":"exact"},{"name":"upregulation of glucose mediated signalling","type":"exact"}],"termid":"GO:1902661"}


id: PBO:0078719
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-Leu (anticodon TAA) 4-1","termid":"PBO:0078719"}


id: GO:0050560
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: tRNA(Asx) + L-aspartate + ATP = aspartyl-tRNA(Asx) + diphosphate + AMP.","definition_xrefs":["EC:6.1.1.23","MetaCyc:6.1.1.23-RXN"],"direct_ancestors":[{"relation_name":"is_a","term_name":"aminoacyl-tRNA ligase activity","termid":"GO:0004812"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0140098"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016874"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0140101"}],"interesting_parent_ids":["GO:0003824","GO:0016874","GO:0003674","GO:0140101","GO:0140098"],"is_obsolete":false,"name":"aspartate-tRNA(Asn) ligase activity","secondary_identifiers":["RHEA:18349"],"synonyms":[{"name":"L-aspartate:tRNAAsx ligase (AMP-forming)","type":"related"},{"name":"aspartate-tRNAAsn ligase activity","type":"exact"},{"name":"nondiscriminating aspartyl-tRNA synthetase activity","type":"related"}],"termid":"GO:0050560"}


id: PATO:0000423
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A nutritional quality inhering in a bearer by virtue of the bearer's ability to synthesize a particular organic compound required for its growth.","definition_xrefs":["Wikipedia:http://en.wikipedia.org/wiki/Prototrophic"],"direct_ancestors":[{"relation_name":"is_a","term_name":"trophic quality","termid":"PATO:0000056"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"prototrophic","termid":"PATO:0000423"}


id: GO:0019348
data:
  {"annotated_genes":["SJAG_00437","SJAG_04952","SJAG_03056","SJAG_03774","SJAG_03656","SJAG_03764","SJAG_00747","SJAG_02163","SJAG_04954","SJAG_00924","SJAG_00394","SJAG_04821","SJAG_03311","SJAG_04770","SJAG_00554","SJAG_02102","SJAG_02903","SJAG_05219","SJAG_00334"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[102078],"is_not":false,"summary":null,"term":"GO:0019348"},{"annotations":[71939,73991,95485],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0019408"},{"annotations":[97731,86781,71318,93913,95486,83266,98975,89499,100370,93861,104593,111865,95469,106339,107780,74445],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006488"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways involving dolichols, any 2,3-dihydropolyprenol derived from four or more linked isoprene units.","definition_xrefs":["ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"polyprenol metabolic process","termid":"GO:0016093"}],"gene_count":19,"genes_by_uniquename":{"SJAG_00334":null,"SJAG_00394":null,"SJAG_00437":null,"SJAG_00554":null,"SJAG_00747":null,"SJAG_00924":null,"SJAG_02102":null,"SJAG_02163":null,"SJAG_02903":null,"SJAG_03056":null,"SJAG_03311":null,"SJAG_03656":null,"SJAG_03764":null,"SJAG_03774":null,"SJAG_04770":null,"SJAG_04821":null,"SJAG_04952":null,"SJAG_04954":null,"SJAG_05219":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006629"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0006629","GO:0044281","GO:0008150"],"is_obsolete":false,"name":"dolichol metabolic process","references_by_uniquename":{"GO_REF:0000107":null,"PMID:21873635":null},"synonyms":[{"name":"dolichol metabolism","type":"exact"}],"termid":"GO:0019348","terms_by_termid":{"GO:0006488":null,"GO:0019348":null,"GO:0019408":null}}


id: GO:0072529
data:
  {"annotated_genes":["SJAG_01673","SJAG_00957","SJAG_03676","SJAG_04487"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[70138],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0009972"},{"annotations":[77974],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0046081"},{"annotations":[86332],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0046135"},{"annotations":[75494],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006256"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of a pyrimidine-containing compound, i.e. any compound that contains pyrimidine or a formal derivative thereof.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular nitrogen compound catabolic process","termid":"GO:0044270"},{"relation_name":"is_a","term_name":"heterocycle catabolic process","termid":"GO:0046700"},{"relation_name":"is_a","term_name":"pyrimidine-containing compound metabolic process","termid":"GO:0072527"},{"relation_name":"is_a","term_name":"organic cyclic compound catabolic process","termid":"GO:1901361"},{"relation_name":"is_a","term_name":"organonitrogen compound catabolic process","termid":"GO:1901565"}],"gene_count":4,"genes_by_uniquename":{"SJAG_00957":null,"SJAG_01673":null,"SJAG_03676":null,"SJAG_04487":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044248"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0044248"],"is_obsolete":false,"name":"pyrimidine-containing compound catabolic process","references_by_uniquename":{"GO_REF:0000107":null,"PMID:21873635":null},"synonyms":[{"name":"pyrimidine and derivative catabolic process","type":"exact"},{"name":"pyrimidine-containing compound breakdown","type":"exact"},{"name":"pyrimidine-containing compound catabolism","type":"exact"},{"name":"pyrimidine-containing compound degradation","type":"exact"}],"termid":"GO:0072529","terms_by_termid":{"GO:0006256":null,"GO:0009972":null,"GO:0046081":null,"GO:0046135":null}}


id: PBO:0065413
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"proteasome 20S subunit beta 2","termid":"PBO:0065413"}


id: PBO:0069863
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 1150, pseudogene","termid":"PBO:0069863"}


id: PBO:0017687
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cytochrome c1 heme lyase Cyt2 (predicted)","termid":"PBO:0017687"}


id: GO:0018158
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The modification of a protein amino acid by oxidation.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein modification process","termid":"GO:0036211"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"protein oxidation","synonyms":[{"name":"protein amino acid oxidation","type":"exact"}],"termid":"GO:0018158"}


id: PBO:0083454
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Dubious open reading frame; unlikely to encode a functional protein, based on available experimental and comparative sequence data; partially overlaps the verified gene DAL80","termid":"PBO:0083454"}


id: PBO:0052342
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"kinesin family member 1C","termid":"PBO:0052342"}


id: PBO:0002346
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"decaprenyl diphosphate synthase subunit 2 Dlp1","termid":"PBO:0002346"}


id: PBO:0034524
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_microtubule_bundle_during_G0_to_G1_transition","termid":"PBO:0034524"}


id: GO:0072745
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an antimycin A stimulus.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular response to organic cyclic compound","termid":"GO:0071407"},{"relation_name":"is_a","term_name":"cellular response to organonitrogen compound","termid":"GO:0071417"},{"relation_name":"is_a","term_name":"response to antimycin A","termid":"GO:1901325"},{"relation_name":"is_a","term_name":"cellular response to oxygen-containing compound","termid":"GO:1901701"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cellular response to antimycin A","termid":"GO:0072745"}


id: GO:0050194
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: H2O + phosphonoacetaldehyde = acetaldehyde + H+ + phosphate.","definition_xrefs":["RHEA:18905","EC:3.11.1.1"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hydrolase activity, acting on acid carbon-phosphorus bonds","termid":"GO:0016827"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016787"}],"interesting_parent_ids":["GO:0016787","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"phosphonoacetaldehyde hydrolase activity","secondary_identifiers":["MetaCyc:PHOSPHONOACETALDEHYDE-HYDROLASE-RXN","KEGG_REACTION:R00747"],"synonyms":[{"name":"2-oxoethylphosphonate phosphonohydrolase activity","type":"related"},{"name":"2-phosphonoacetylaldehyde phosphonohydrolase activity","type":"related"},{"name":"phosphonatase activity","type":"related"},{"name":"phosphonoacetylaldehyde phosphonohydrolase activity","type":"related"}],"termid":"GO:0050194"}


id: PBO:0036047
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_histone_H3-K14_acetylation_at_centromere_outer_repeat_during_vegetative_growth","termid":"PBO:0036047"}


id: GO:0033705
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: GDP-6-deoxy-D-mannose + NAD(P)+ = GDP-4-dehydro-6-deoxy-D-mannose + NAD(P)H + H+.","definition_xrefs":["EC:1.1.1.281"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor","termid":"GO:0016616"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016491"],"is_obsolete":false,"name":"GDP-4-dehydro-6-deoxy-D-mannose reductase activity","secondary_identifiers":["MetaCyc:GDP-4-DEHYDRO-D-RHAMNOSE-REDUCTASE-RXN"],"synonyms":[{"name":"GDP-4-keto-6-deoxy-D-mannose reductase activity","type":"broad"},{"name":"GDP-6-deoxy-D-lyxo-4-hexulose reductase activity","type":"related"},{"name":"GDP-6-deoxy-D-mannose:NAD(P)+ 4-oxidoreductase (D-rhamnose-forming) activity","type":"related"},{"name":"Rmd","type":"related"}],"termid":"GO:0033705"}


id: GO:0052858
data:
  {"annotated_genes":["SJAG_04791"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[99404],"is_not":false,"summary":null,"term":"GO:0052858"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: acetyl phosphate + peptidyl-L-lysine = phosphate + peptidyl-N6-acetyl-L-lysine.","definition_xrefs":["GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"N-acetyltransferase activity","termid":"GO:0008080"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04791":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016746"},{"rel_name":"is_a","termid":"GO:0016740"}],"interesting_parent_ids":["GO:0016740","GO:0003824","GO:0003674","GO:0016746"],"is_obsolete":false,"name":"peptidyl-lysine acetyltransferase activity","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"acetyl-phosphate:peptidyl-L-lysine 6-N-acetyltransferase activity","type":"exact"},{"name":"acetyl-phosphate:peptidyl-L-lysine N6-acetyltransferase activity","type":"exact"},{"name":"peptidyl-lysine N(6)-acetyltransferase activity","type":"exact"},{"name":"peptidyl-lysine N-acetyltransferase activity, acting on acetyl phosphate as donor","type":"exact"},{"name":"peptidyl-lysine N6-acetyltransferase activity","type":"exact"}],"termid":"GO:0052858","terms_by_termid":{"GO:0052858":null}}


id: PBO:0044917
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DiGeorge syndrome chromosome region","termid":"PBO:0044917"}


id: GO:0016139
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of glycosides, compounds in which a glycosyl group is substituted into a hydroxyl, thiol or selenol group in another compound.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"glycoside metabolic process","termid":"GO:0016137"},{"relation_name":"is_a","term_name":"glycosyl compound catabolic process","termid":"GO:1901658"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"glycoside catabolic process","secondary_identifiers":["GO:0016142"],"synonyms":[{"name":"O-glycoside breakdown","type":"exact"},{"name":"O-glycoside catabolic process","type":"exact"},{"name":"O-glycoside catabolism","type":"exact"},{"name":"O-glycoside degradation","type":"exact"},{"name":"glycoside breakdown","type":"exact"},{"name":"glycoside catabolism","type":"exact"},{"name":"glycoside degradation","type":"exact"}],"termid":"GO:0016139"}


id: PBO:0059628
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial carrier 2","termid":"PBO:0059628"}


id: GO:0050097
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: threo-3-methyl-L-aspartate = L-glutamate.","definition_xrefs":["EC:5.4.99.1","RHEA:12857"],"direct_ancestors":[{"relation_name":"is_a","term_name":"intramolecular transferase activity","termid":"GO:0016866"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016853"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016853"],"is_obsolete":false,"name":"methylaspartate mutase activity","secondary_identifiers":["KEGG_REACTION:R00262","MetaCyc:METHYLASPARTATE-MUTASE-RXN"],"synonyms":[{"name":"L-threo-3-methylaspartate carboxy-aminomethylmutase activity","type":"related"},{"name":"b-methylaspartate-glutamate mutase activity","type":"related"},{"name":"beta-methylaspartate-glutamate mutase activity","type":"related"},{"name":"glutamate isomerase activity","type":"related"},{"name":"glutamate mutase activity","type":"related"},{"name":"glutamic acid isomerase activity","type":"related"},{"name":"glutamic acid mutase activity","type":"related"},{"name":"glutamic isomerase activity","type":"related"},{"name":"glutamic mutase activity","type":"related"},{"name":"methylaspartic acid mutase activity","type":"related"}],"termid":"GO:0050097"}


id: GO:1990904
data:
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id: GO:0042195
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of gallate, the anion of gallic acid, in the presence of oxygen.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"gallate catabolic process","termid":"GO:0019396"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0044248"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0044281","GO:0044248","GO:0008150"],"is_obsolete":false,"name":"aerobic gallate catabolic process","synonyms":[{"name":"aerobic gallate breakdown","type":"exact"},{"name":"aerobic gallate catabolism","type":"exact"},{"name":"aerobic gallate degradation","type":"exact"},{"name":"aerobic gallic acid catabolic process","type":"exact"},{"name":"aerobic gallic acid catabolism","type":"exact"}],"termid":"GO:0042195"}


id: PBO:0077783
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DNA topoisomerase I pseudogene 1","termid":"PBO:0077783"}


id: PBO:0090532
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NLI interacting factor family phosphatase","termid":"PBO:0090532"}


id: PBO:0000527
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"regulator of G-protein signaling Rgs1","termid":"PBO:0000527"}


id: GO:0033195
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an alkyl hydroperoxide stimulus. Alkyl hydroperoxides are monosubstitution products of hydrogen peroxide, HOOH, where the substituent is an alkyl group.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to organic substance","termid":"GO:0010033"},{"relation_name":"is_a","term_name":"response to hydroperoxide","termid":"GO:0033194"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"response to alkyl hydroperoxide","termid":"GO:0033195"}


id: PBO:0064815
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protein phosphatase 1 regulatory inhibitor subunit 2 pseudogene 6","termid":"PBO:0064815"}


id: GO:0008521
data:
  {"annotated_genes":["SJAG_04325"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[102061],"is_not":false,"summary":null,"term":"GO:0008521"}]},"cv_name":"molecular_function","definition":"Enables the transfer of acetyl-CoA from one side of a membrane to the other. Acetyl-CoA is a derivative of coenzyme A in which the sulfhydryl group is acetylated; it is a metabolite derived from several pathways (e.g. glycolysis, fatty acid oxidation, amino-acid catabolism) and is further metabolized by the tricarboxylic acid cycle. It is a key intermediate in lipid and terpenoid biosynthesis.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"organic anion transmembrane transporter activity","termid":"GO:0008514"},{"relation_name":"is_a","term_name":"amide transmembrane transporter activity","termid":"GO:0042887"},{"relation_name":"is_a","term_name":"adenosine 3',5'-bisphosphate transmembrane transporter activity","termid":"GO:0071077"},{"relation_name":"is_a","term_name":"sulfur compound transmembrane transporter activity","termid":"GO:1901682"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04325":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0005215","GO:0022857"],"is_obsolete":false,"name":"acetyl-CoA transmembrane transporter activity","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["Reactome:R-HSA-727759","Reactome:R-HSA-5649742"],"synonyms":[{"name":"acetyl-CoA transporter activity","type":"related"}],"termid":"GO:0008521","terms_by_termid":{"GO:0008521":null}}


id: GO:0050468
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: (S)-reticuline + O2 = (S)-scoulerine + H2O2 + H+.","definition_xrefs":["RHEA:19885"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with oxygen as acceptor","termid":"GO:0046993"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003824","GO:0016491","GO:0003674"],"is_obsolete":false,"name":"reticuline oxidase activity","secondary_identifiers":["MetaCyc:RETICULINE-OXIDASE-RXN","KEGG_REACTION:R03831","EC:1.21.3.3"],"synonyms":[{"name":"(S)-reticuline:oxygen oxidoreductase (methylene-bridge-forming)","type":"related"},{"name":"BBE","type":"related"},{"name":"berberine bridge enzyme activity","type":"related"},{"name":"berberine-bridge-forming enzyme activity","type":"related"},{"name":"tetrahydroprotoberberine synthase activity","type":"related"}],"termid":"GO:0050468"}


id: PBO:0063416
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PDE2A antisense RNA 1","termid":"PBO:0063416"}


id: PBO:0043506
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CNTNAP3 pseudogene 1","termid":"PBO:0043506"}


id: GO:0043096
data:
  {"annotated_genes":["SJAG_01859"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[73564],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006168"}]},"cv_name":"biological_process","definition":"Any process that generates purine nucleobases, one of the two classes of nitrogen-containing ring compounds found in DNA and RNA, from derivatives of them without de novo synthesis.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"purine nucleobase biosynthetic process","termid":"GO:0009113"},{"relation_name":"is_a","term_name":"purine-containing compound salvage","termid":"GO:0043101"}],"gene_count":1,"genes_by_uniquename":{"SJAG_01859":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0055086"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0008150","GO:0055086","GO:0044281"],"is_obsolete":false,"name":"purine nucleobase salvage","references_by_uniquename":{"PMID:21873635":null},"synonyms":[{"name":"purine base salvage","type":"exact"}],"termid":"GO:0043096","terms_by_termid":{"GO:0006168":null}}


id: GO:0000828
data:
  {"annotated_genes":["SJAG_02321","SJAG_00244","SJAG_03409"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[71434,74778],"is_not":false,"summary":null,"term":"GO:0000828"},{"annotations":[110226],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0052723"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: ATP + 1D-myo-inositol 1,2,3,4,5,6-hexakisphosphate = ADP + diphospho-1D-myo-inositol-pentakisphosphate. The isomeric configuration of diphospho-1D-myo-inositol-pentakisphosphate (PP-IP5) is unknown.","definition_xrefs":["PMID:16429326","GOC:elh","GOC:vw"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phosphotransferase activity, phosphate group as acceptor","termid":"GO:0016776"},{"relation_name":"is_a","term_name":"inositol phosphate kinase activity","termid":"GO:0180030"}],"gene_count":3,"genes_by_uniquename":{"SJAG_00244":null,"SJAG_02321":null,"SJAG_03409":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016301"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0016740","GO:0016301","GO:0003824"],"is_obsolete":false,"name":"inositol hexakisphosphate kinase activity","references_by_uniquename":{"GO_REF:0000107":null,"PMID:21873635":null},"secondary_identifiers":["Reactome:R-HSA-1855207","Reactome:R-HSA-1855216","Reactome:R-HSA-1855227"],"synonyms":[{"name":"IP6 kinase","type":"exact"}],"termid":"GO:0000828","terms_by_termid":{"GO:0000828":null,"GO:0052723":null}}


id: PBO:0069152
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 403, pseudogene","termid":"PBO:0069152"}


id: PR:Q9UUA9
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A pre-rRNA-processing protein TSR2 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PANTHER:PTHR21250:SF0","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pre-rRNA-processing protein tsr2 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC409.15","secondary_identifiers":["UniProtKB:Q9UUA9"],"synonyms":[{"name":"SPBC409.15","type":"related"},{"name":"Spom972h-TSR2","type":"exact"}],"termid":"PR:Q9UUA9"}


id: GO:0050814
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of epothilone, a drug obtained from the myxobacteria Sporangium cellulosum that interferes with cell division. Some epothilones are being studied as treatments for cancer.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"aromatic compound biosynthetic process","termid":"GO:0019438"},{"relation_name":"is_a","term_name":"macrolide biosynthetic process","termid":"GO:0033068"},{"relation_name":"is_a","term_name":"ketone biosynthetic process","termid":"GO:0042181"},{"relation_name":"is_a","term_name":"sulfur compound biosynthetic process","termid":"GO:0044272"},{"relation_name":"is_a","term_name":"epothilone metabolic process","termid":"GO:0050813"},{"relation_name":"is_a","term_name":"organonitrogen compound biosynthetic process","termid":"GO:1901566"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006790"},{"rel_name":"is_a","termid":"GO:0019748"}],"interesting_parent_ids":["GO:0008150","GO:0006790","GO:0044281","GO:0019748"],"is_obsolete":false,"name":"epothilone biosynthetic process","synonyms":[{"name":"epothilone anabolism","type":"exact"},{"name":"epothilone biosynthesis","type":"exact"},{"name":"epothilone formation","type":"exact"},{"name":"epothilone synthesis","type":"exact"}],"termid":"GO:0050814"}


id: GO:0023018
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The process in which signal transmission via a diffusible molecule is initiated by a T cell.","definition_xrefs":["GOC:mtg_signal"],"gene_count":0,"genotype_count":0,"name":"obsolete T cell activation of signal transmission via diffusible molecule (obsolete GO:0023018)","synonyms":[{"name":"T cell activation of signal transmission via diffusible molecule","type":"exact"}],"termid":"GO:0023018"}


id: GO:0050683
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to an AF-1 protein domain, a ligand-independent transactivation domain which is required for the full transcriptional activity of the receptor.","definition_xrefs":["PMID:9682036"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein domain specific binding","termid":"GO:0019904"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005515"},{"rel_name":"is_a","termid":"GO:0005488"}],"interesting_parent_ids":["GO:0005488","GO:0005515","GO:0003674"],"is_obsolete":false,"name":"AF-1 domain binding","termid":"GO:0050683"}


id: PBO:0085156
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Nucleosome spacing factor; subunit of complex containing actin and actin-related proteins that has chromatin remodeling activity and 3' to 5' DNA helicase activity; involved in positioning and spacing of nucleosomes over most genes independently of transcription; promotes nucleosome shifts in the 3' direction; has a role in modulating stress gene transcription","termid":"PBO:0085156"}


id: GO:0032197
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A type of transposition in which a transposable element (transposon) copies and pastes itself into a different genomic location by transcription and convertsion of the transcribed RNA back into DNA through reverse transcription.","definition_xrefs":["PMID:30416149","PMID:26912865","ISBN:1555812090","PMID:32588192","PMID:30958115"],"direct_ancestors":[{"relation_name":"is_a","term_name":"transposition","termid":"GO:0032196"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"retrotransposition","secondary_identifiers":["GO:0006320","GO:0006319","GO:0006321","GO:0006322","Wikipedia:Transposon##Class_I\\:_Retrotransposons"],"synonyms":[{"name":"Class I transposition","type":"exact"},{"name":"RNA-mediated transposition","type":"exact"},{"name":"Tf transposition","type":"narrow"},{"name":"Ty element transposition","type":"narrow"},{"name":"Ty1 element transposition","type":"narrow"},{"name":"Ty2 element transposition","type":"narrow"},{"name":"Ty3 element transposition","type":"narrow"},{"name":"retrotransposon transposition","type":"exact"},{"name":"transposition via RNA intermediate","type":"exact"},{"name":"transposition, RNA-mediated","type":"exact"}],"termid":"GO:0032197"}


id: GO:1900187
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of cell adhesion involved in single-species biofilm formation.","definition_xrefs":["GOC:di","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of cell-substrate adhesion","termid":"GO:0010810"},{"relation_name":"regulates","term_name":"cell adhesion involved in single-species biofilm formation","termid":"GO:0043709"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0007155"}],"interesting_parent_ids":["GO:0007155","GO:0008150"],"is_obsolete":false,"name":"regulation of cell adhesion involved in single-species biofilm formation","synonyms":[{"name":"regulation of cell adhesion during single-species biofilm formation","type":"related"}],"termid":"GO:1900187"}


id: PBO:0074852
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nucleolar RNA, C/D box 41","termid":"PBO:0074852"}


id: GO:0019895
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. The activity of linking kinesins, cytoplasmic proteins responsible for moving vesicles and organelles towards the distal end of microtubules, to mitochondria.","definition_xrefs":["PMID:12495622"],"gene_count":0,"genotype_count":0,"name":"obsolete kinesin-associated mitochondrial adaptor activity (obsolete GO:0019895)","termid":"GO:0019895"}


id: GO:0061108
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The progression of the seminal vesicle epithelium over time, from its formation to the mature structure.","definition_xrefs":["GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"developmental process involved in reproduction","termid":"GO:0003006"},{"relation_name":"is_a","term_name":"tube development","termid":"GO:0035295"},{"relation_name":"is_a","term_name":"epithelium development","termid":"GO:0060429"},{"relation_name":"part_of","term_name":"seminal vesicle development","termid":"GO:0061107"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"seminal vesicle epithelium development","termid":"GO:0061108"}


id: PBO:0078574
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tripartite motif-containing 51H, pseudogene","termid":"PBO:0078574"}


id: GO:0043895
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the cyclization of part of a 1,4-alpha-D-glucan chain by formation of a 1,4-alpha-D-glucosidic bond.","definition_xrefs":["EC:2.4.1.19"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hexosyltransferase activity","termid":"GO:0016758"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016757"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0016757","GO:0016740","GO:0003824"],"is_obsolete":false,"name":"cyclomaltodextrin glucanotransferase activity","secondary_identifiers":["MetaCyc:2.4.1.19-RXN"],"synonyms":[{"name":"1,4-alpha-D-glucan 4-alpha-D-(1,4-alpha-D-glucano)-transferase (cyclizing)","type":"exact"},{"name":"BMA","type":"related"},{"name":"Bacillus macerans amylase","type":"related"},{"name":"CGTase","type":"related"},{"name":"alpha-1,4-glucan 4-glycosyltransferase, cyclizing","type":"related"},{"name":"alpha-cyclodextrin glucanotransferase","type":"related"},{"name":"alpha-cyclodextrin glycosyltransferase","type":"related"},{"name":"beta-cyclodextrin glucanotransferase","type":"related"},{"name":"beta-cyclodextrin glycosyltransferase","type":"related"},{"name":"cyclodextrin glucanotransferase","type":"broad"},{"name":"cyclodextrin glycosyltransferase","type":"related"},{"name":"cyclomaltodextrin glucotransferase","type":"related"},{"name":"cyclomaltodextrin glycosyltransferase","type":"related"},{"name":"gamma-cyclodextrin glycosyltransferase","type":"related"},{"name":"konchizaimu","type":"related"},{"name":"neutral-cyclodextrin glycosyltransferase","type":"related"}],"termid":"GO:0043895"}


id: PBO:0062849
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ornithine transcarbamylase","termid":"PBO:0062849"}


id: GO:0047019
data:
  {"annotated_genes":["SJAG_01869"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[87448],"is_not":false,"summary":null,"term":"GO:0047019"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: indole-3-ethanol + NADP+ = (indol-3-yl)acetaldehyde + H+ + NADPH.","definition_xrefs":["EC:1.1.1.191","RHEA:17037"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor","termid":"GO:0016616"}],"gene_count":1,"genes_by_uniquename":{"SJAG_01869":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016491","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"indole-3-acetaldehyde reductase (NADPH) activity","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["KEGG_REACTION:R02680","MetaCyc:1.1.1.191-RXN"],"synonyms":[{"name":"(indol-3-yl)ethanol:NADP+ oxidoreductase activity","type":"related"},{"name":"indole-3-ethanol:NADP+ oxidoreductase activity","type":"related"},{"name":"indoleacetaldehyde (reduced nicotinamide adenine dinucleotide phosphate) reductase activity","type":"related"}],"termid":"GO:0047019","terms_by_termid":{"GO:0047019":null}}


id: GO:0002204
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which immunoglobulin genes are formed through recombination of the germline genetic elements, also known as immunoglobulin gene segments, within a single locus following the induction of and contributing to an immune response.","definition_xrefs":["ISBN:0781735149","GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"somatic diversification of immunoglobulins involved in immune response","termid":"GO:0002208"},{"relation_name":"is_a","term_name":"somatic recombination of immunoglobulin gene segments","termid":"GO:0016447"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006259"},{"rel_name":"is_a","termid":"GO:0006310"},{"rel_name":"part_of","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0008150","GO:0006310","GO:0010467","GO:0006259"],"is_obsolete":false,"name":"somatic recombination of immunoglobulin genes involved in immune response","synonyms":[{"name":"somatic recombination of antibody genes during immune response","type":"related"},{"name":"somatic recombination of immunoglobulin genes during immune response","type":"related"}],"termid":"GO:0002204"}


id: FYPO:0000644
data:
  {"alleles_by_uniquename":{"SJAG_01143:allele-2":{"allele_type":"partial_amino_acid_deletion","description":"711-723","gene_uniquename":"SJAG_01143","name":"mid1-delta(711-723 a.a.)","uniquename":"SJAG_01143:allele-2"}},"annotation_feature_type":"genotype","cv_annotations":{"single_locus_phenotype":[{"annotations":[114391],"is_not":false,"summary":null,"term":"FYPO:0000644"}]},"cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which cellular protein localization is normal (i.e. indistinguishable from wild type).","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal cellular process during vegetative growth","termid":"FYPO:0001319"},{"relation_name":"is_a","term_name":"localization phenotype during vegetative growth","termid":"FYPO:0001337"},{"relation_name":"is_a","term_name":"normal protein localization","termid":"FYPO:0003627"}],"gene_count":1,"genes_by_uniquename":{"SJAG_01143":null},"genotype_count":1,"genotypes_by_uniquename":{"mid1-delta(711-723_a.a.)-711-723-partial_amino_acid_deletion-expression-not_assayed_or_wild_type":{"display_name":"mid1-delta(711-723 a.a.)(aa)","display_uniquename":"mid1-delta(711-723_a.a.)-711-723-partial_amino_acid_deletion-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01143:allele-2","expression":"Not assayed or wild type"}]}]}},"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0001312"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0000138","FYPO:0001320","FYPO:0000002","FYPO:0000257","FYPO:0001312"],"is_obsolete":false,"name":"normal protein localization during vegetative growth","references_by_uniquename":{"PMID:25866389":null},"single_locus_annotated_genes":["SJAG_01143"],"single_locus_genotype_uniquenames":["mid1-delta(711-723_a.a.)-711-723-partial_amino_acid_deletion-expression-not_assayed_or_wild_type"],"synonyms":[{"name":"normal cellular protein localization during vegetative growth","type":"exact"},{"name":"normal protein localisation during vegetative growth","type":"exact"},{"name":"normal protein localization during mitotic cell cycle","type":"related"}],"termid":"FYPO:0000644","terms_by_termid":{"FYECO:0000137":null,"FYPO:0000644":null}}


id: GO:0032566
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to dGDP, deoxyguanosine diphosphate.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"guanyl deoxyribonucleotide binding","termid":"GO:0032560"},{"relation_name":"is_a","term_name":"anion binding","termid":"GO:0043168"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0005488","GO:0003674"],"is_obsolete":false,"name":"dGDP binding","termid":"GO:0032566"}


id: GO:0070813
data:
  {"annotated_genes":["SJAG_01693","SJAG_00084","SJAG_04060","SJAG_03475","SJAG_05027"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[112571,83533,84500,85715,102857],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0070814"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways involving hydrogen sulfide, H2S.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"sulfur compound metabolic process","termid":"GO:0006790"}],"gene_count":5,"genes_by_uniquename":{"SJAG_00084":null,"SJAG_01693":null,"SJAG_03475":null,"SJAG_04060":null,"SJAG_05027":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006790"}],"interesting_parent_ids":["GO:0008150","GO:0006790"],"is_obsolete":false,"name":"hydrogen sulfide metabolic process","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"hydrogen sulfide metabolism","type":"exact"},{"name":"hydrogen sulphide metabolic process","type":"exact"},{"name":"hydrogen sulphide metabolism","type":"exact"}],"termid":"GO:0070813","terms_by_termid":{"GO:0070814":null}}


id: PBO:0081028
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger CCCH-type containing 10","termid":"PBO:0081028"}


id: GO:2000554
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of T-helper 1 cell cytokine production.","definition_xrefs":["GOC:obol"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of T cell cytokine production","termid":"GO:0002724"},{"relation_name":"is_a","term_name":"regulation of T-helper 1 type immune response","termid":"GO:0002825"},{"relation_name":"regulates","term_name":"T-helper 1 cell cytokine production","termid":"GO:0035744"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0010467","GO:0008150"],"is_obsolete":false,"name":"regulation of T-helper 1 cell cytokine production","synonyms":[{"name":"regulation of Th1 cell cytokine production","type":"exact"}],"termid":"GO:2000554"}


id: PBO:0059662
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MT-CO1 pseudogene 28","termid":"PBO:0059662"}


id: PBO:0005684
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"histone lysine methyltransferase Set7 (predicted)","termid":"PBO:0005684"}


id: PBO:0051650
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"inosine monophosphate dehydrogenase 1 pseudogene 5","termid":"PBO:0051650"}


id: GO:0046529
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The joining of the parts of the wing imaginal discs, giving rise to the adult thorax.","direct_ancestors":[{"relation_name":"is_a","term_name":"post-embryonic animal morphogenesis","termid":"GO:0009886"},{"relation_name":"part_of","term_name":"imaginal disc fusion","termid":"GO:0046528"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"imaginal disc fusion, thorax closure","termid":"GO:0046529"}


id: PBO:0110308
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mRNA cleavage and polyadenylation specificity factor complex associated protein (PNUTS)","termid":"PBO:0110308"}


id: PBO:0091642
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"fatty acid amide hydrolase Fah1","termid":"PBO:0091642"}


id: SO:0002035
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A primary transcript encoding a lncRNA.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nc_primary_transcript","termid":"SO:0000483"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"lncRNA_primary_transcript","synonyms":[{"name":"lncRNA primary transcript","type":"exact"}],"termid":"SO:0002035"}


id: PBO:0053260
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"LIF antisense RNA 1","termid":"PBO:0053260"}


id: GO:0060291
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process that modulates synaptic plasticity such that synapses are changed resulting in the increase in the rate, or frequency of synaptic transmission at the synapse.","definition_xrefs":["GOC:dph","GOC:dgh"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of synaptic plasticity","termid":"GO:0048167"},{"relation_name":"is_a","term_name":"positive regulation of synaptic transmission","termid":"GO:0050806"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0023052"},{"rel_name":"positively_regulates","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"long-term synaptic potentiation","synonyms":[{"name":"LTP","type":"related"},{"name":"long-term potentiation","type":"broad"}],"termid":"GO:0060291"}


id: PBO:0050811
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"HUS1 checkpoint clamp component B","termid":"PBO:0050811"}


id: PBO:0072690
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RUNX1 partner transcriptional co-repressor 1","termid":"PBO:0072690"}


id: GO:0009972
data:
  {"annotated_genes":["SJAG_01673"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[70138],"is_not":false,"summary":null,"term":"GO:0009972"}]},"cv_name":"biological_process","definition":"The removal of amino group in the presence of water.","definition_xrefs":["GOC:sm"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cytidine catabolic process","termid":"GO:0006216"}],"gene_count":1,"genes_by_uniquename":{"SJAG_01673":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0055086"},{"rel_name":"is_a","termid":"GO:0044248"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0055086","GO:0044281","GO:0044248"],"is_obsolete":false,"name":"cytidine deamination","references_by_uniquename":{"PMID:21873635":null},"termid":"GO:0009972","terms_by_termid":{"GO:0009972":null}}


id: GO:0009380
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"Any of the protein complexes formed by the UvrABC excinuclease system, which carries out nucleotide excision repair. Three different complexes are formed by the 3 proteins as they proceed through the excision repair process. First a complex consisting of two A subunits and two B subunits bind DNA and unwind it around the damaged site. Then, the A subunits disassociate leaving behind a stable complex between B subunits and DNA. Now, subunit C binds to this B+DNA complex and causes subunit B to nick the DNA on one side of the complex while subunit C nicks the DNA on the other side of the complex. DNA polymerase I and DNA ligase can then repair the resulting gap.","definition_xrefs":["PMID:12145219","GOC:mlg","PMID:15192705","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"endodeoxyribonuclease complex","termid":"GO:1905347"},{"relation_name":"is_a","term_name":"DNA repair complex","termid":"GO:1990391"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0032991","GO:0005575"],"is_obsolete":false,"name":"excinuclease repair complex","synonyms":[{"name":"UvrABC excinuclease complex","type":"exact"},{"name":"excinuclease ABC complex","type":"exact"}],"termid":"GO:0009380"}


id: GO:0042867
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of pyruvate, 2-oxopropanoate.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pyruvate metabolic process","termid":"GO:0006090"},{"relation_name":"is_a","term_name":"monocarboxylic acid catabolic process","termid":"GO:0072329"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044248"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0008150","GO:0044248","GO:0044281"],"is_obsolete":false,"name":"pyruvate catabolic process","synonyms":[{"name":"pyruvate breakdown","type":"exact"},{"name":"pyruvate catabolism","type":"exact"},{"name":"pyruvate degradation","type":"exact"}],"termid":"GO:0042867"}


id: PR:000045540
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A cyclin-dependent kinase 1 (Schizosaccharomyces pombe) that has been phosphorylated on a Thr residue (Thr-167) within the T-Loop, and not phosphorylated on the ATP binding region (Thr-14 or Tyr-15). UniProtKB:P04551, Thr-14/Tyr-15, PR:000026291|Thr-167, MOD:00047.","definition_xrefs":["PRO:CNA","PomBase:MAH","PMID:26131711"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cyclin-dependent kinase 1 (Schizosaccharomyces pombe)","termid":"PR:000036301"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cdc2/Phos:(T167)UnMod:(T14,Y15)","pombase_gene_id":"SPBC11B10.09","synonyms":[{"name":"Cdc2 phosphorylated 1","type":"related"},{"name":"Cdc2-Hc","type":"narrow"},{"name":"Cdc2-Hd","type":"narrow"},{"name":"Spom-cdc2/Phos:1","type":"exact"},{"name":"UniProtKB:P04551, Thr-14/Tyr-15, PR:000026291|Thr-167, MOD:00047","type":"exact"},{"name":"cdc2/Phos:(T167)UnMod:(T14,Y15)","type":"exact"}],"termid":"PR:000045540"}


id: FYPO:0005886
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which transcription from a promoter that contains one or more heat shock elements (HSEs) occurs to a greater extent than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased transcription during vegetative growth","termid":"FYPO:0000780"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0006551"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000294"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0000294","FYPO:0005447","FYPO:0001985","FYPO:0000002","FYPO:0006551"],"is_obsolete":false,"name":"increased transcription from HSE promoter","synonyms":[{"name":"expression of Hsf1 target genes increased","type":"related"},{"name":"increased transcription from HSE promoter during mitotic cell cycle","type":"related"},{"name":"increased transcription from HSE promoter during vegetative growth","type":"exact"}],"termid":"FYPO:0005886"}


id: GO:0010355
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: homogentisic acid + farnesyl diphosphate = 2-methyl-6-farnesylplastoquinol.","definition_xrefs":["PMID:16989822"],"direct_ancestors":[{"relation_name":"is_a","term_name":"homogentisate prenyltransferase activity","termid":"GO:0010354"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016765"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016765","GO:0003674","GO:0016740","GO:0003824"],"is_obsolete":false,"name":"homogentisate farnesyltransferase activity","termid":"GO:0010355"}


id: PR:P40387
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"An alpha,alpha-trehalose-phosphate synthase [UDP-forming] that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO01450","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"alpha,alpha-trehalose-phosphate synthase [UDP-forming] (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC328.03","secondary_identifiers":["UniProtKB:P40387"],"synonyms":[{"name":"Spom972h-otsA","type":"exact"},{"name":"UDP-glucose-glucosephosphate glucosyltransferase (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"trehalose-6-phosphate synthase (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:P40387"}


id: PBO:0041020
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"BPI fold containing family B member 3","termid":"PBO:0041020"}


id: PATO:0000271
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0000271 prepulse inhibition (obsolete PATO:0000271)","termid":"PATO:0000271"}


id: PBO:0075589
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SPINT1 antisense RNA 1","termid":"PBO:0075589"}


id: PBO:0072515
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein SA pseudogene 44","termid":"PBO:0072515"}


id: PBO:0016990
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial NADH dehydrogenase (ubiquinone) Nde1 (predicted)","termid":"PBO:0016990"}


id: PBO:0066313
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RBPJ pseudogene 7","termid":"PBO:0066313"}


id: PBO:0030711
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-binding_phenotype","termid":"PBO:0030711"}


id: PBO:0084382
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Low-affinity Fe(II) transporter of the plasma membrane","termid":"PBO:0084382"}


id: GO:0035964
data:
  {"annotated_genes":["SJAG_04391","SJAG_03268"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[71397,112826],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0048205"}]},"cv_name":"biological_process","definition":"The evagination of a Golgi membrane, resulting in formation of a COPI-coated vesicle.","definition_xrefs":["PMID:17041781","GOC:br","PMID:10052452"],"direct_ancestors":[{"relation_name":"is_a","term_name":"vesicle budding from membrane","termid":"GO:0006900"},{"relation_name":"part_of","term_name":"vesicle targeting, to, from or within Golgi","termid":"GO:0048199"}],"gene_count":2,"genes_by_uniquename":{"SJAG_03268":null,"SJAG_04391":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0061024"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0016192"}],"interesting_parent_ids":["GO:0061024","GO:0006810","GO:0008150","GO:0016192"],"is_obsolete":false,"name":"COPI-coated vesicle budding","references_by_uniquename":{"GO_REF:0000107":null,"PMID:21873635":null},"synonyms":[{"name":"COPI vesicle budding","type":"exact"}],"termid":"GO:0035964","terms_by_termid":{"GO:0048205":null}}


id: PBO:0051117
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"immunoglobulin heavy variable 1/OR15-2 (pseudogene)","termid":"PBO:0051117"}


id: PBO:0060058
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MT-ND5 pseudogene 5","termid":"PBO:0060058"}


id: GO:0045926
data:
  {"annotated_genes":["SJAG_02169"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[86401],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0051517"}]},"cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the rate or extent of growth, the increase in size or mass of all or part of an organism.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of growth","termid":"GO:0040008"},{"relation_name":"is_a","term_name":"negative regulation of biological process","termid":"GO:0048519"},{"relation_name":"negatively_regulates","term_name":"growth","termid":"GO:0040007"}],"gene_count":1,"genes_by_uniquename":{"SJAG_02169":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of growth","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"down regulation of growth","type":"exact"},{"name":"down-regulation of growth","type":"exact"},{"name":"downregulation of growth","type":"exact"},{"name":"inhibition of growth","type":"narrow"}],"termid":"GO:0045926","terms_by_termid":{"GO:0051517":null}}


id: PBO:0049206
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glutamate ionotropic receptor NMDA type subunit 1","termid":"PBO:0049206"}


id: PBO:0049817
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"histone deacetylase 9","termid":"PBO:0049817"}


id: GO:0007345
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Formation and development of an embryo and its organized structures.","definition_xrefs":["GOC:ems","ISBN:0070524300","ISBN:0140512888"],"gene_count":0,"genotype_count":0,"name":"obsolete embryogenesis and morphogenesis (obsolete GO:0007345)","synonyms":[{"name":"embryogenesis and morphogenesis","type":"exact"}],"termid":"GO:0007345"}


id: PBO:0034201
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-main_stem_of","termid":"PBO:0034201"}


id: PBO:0089256
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"karyopherin/importin beta family nuclear import signal receptor Kap14","termid":"PBO:0089256"}


id: PBO:0076110
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"syntaxin 17","termid":"PBO:0076110"}


id: GO:1902523
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of protein K63-linked ubiquitination.","definition_xrefs":["GOC:TermGenie","PMID:21931591"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of protein K63-linked ubiquitination","termid":"GO:1900044"},{"relation_name":"is_a","term_name":"positive regulation of protein polyubiquitination","termid":"GO:1902916"},{"relation_name":"positively_regulates","term_name":"protein K63-linked ubiquitination","termid":"GO:0070534"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0070647"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"positively_regulates","termid":"GO:0070647"}],"interesting_parent_ids":["GO:0070647","GO:0008150"],"is_obsolete":false,"name":"positive regulation of protein K63-linked ubiquitination","synonyms":[{"name":"activation of protein K63-linked polyubiquitination","type":"narrow"},{"name":"activation of protein K63-linked ubiquitination","type":"narrow"},{"name":"positive regulation of protein K63-linked polyubiquitination","type":"exact"},{"name":"up regulation of protein K63-linked polyubiquitination","type":"exact"},{"name":"up regulation of protein K63-linked ubiquitination","type":"exact"},{"name":"up-regulation of protein K63-linked polyubiquitination","type":"exact"},{"name":"up-regulation of protein K63-linked ubiquitination","type":"exact"},{"name":"upregulation of protein K63-linked polyubiquitination","type":"exact"},{"name":"upregulation of protein K63-linked ubiquitination","type":"exact"}],"termid":"GO:1902523"}


id: PATO:0001959
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A structural quality inhering in a bearer by virtue of the bearer's in which bundles of aligned anatomical fibers have become separated.","definition_xrefs":["PATOC:mw"],"direct_ancestors":[{"relation_name":"is_a","term_name":"fasciculation","termid":"PATO:0002013"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"defasciculated","termid":"PATO:0001959"}


id: GO:0060929
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The commitment of cells to atrioventricular (AV) node cell fates and their capacity to differentiate into AV node cells.","definition_xrefs":["GOC:mtg_heart"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cardiac pacemaker cell fate commitment","termid":"GO:0060927"},{"relation_name":"part_of","term_name":"atrioventricular node cell differentiation","termid":"GO:0060922"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"atrioventricular node cell fate commitment","synonyms":[{"name":"AV node cell fate commitment","type":"exact"}],"termid":"GO:0060929"}


id: PBO:0066982
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RN7SK pseudogene 285","termid":"PBO:0066982"}


id: PBO:0083805
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Essential protein that forms a dimer with Ntr1p; also forms a trimer, with Ntr2p and the DExD/H-box RNA helicase Prp43p, that is involved in spliceosome disassembly","termid":"PBO:0083805"}


id: GO:0035966
data:
  {"annotated_genes":["SJAG_02601","SJAG_01556","SJAG_00564","SJAG_03482","SJAG_03345","SJAG_05022","SJAG_00552","SJAG_00270","SJAG_04262","SJAG_00173","SJAG_00219","SJAG_04283","SJAG_01160","SJAG_00054","SJAG_02419","SJAG_04567","SJAG_01737","SJAG_04187","SJAG_04103","SJAG_04471","SJAG_00403","SJAG_01768","SJAG_04435","SJAG_03657","SJAG_03611","SJAG_00790","SJAG_00530","SJAG_03815","SJAG_01516","SJAG_04612","SJAG_00226","SJAG_04118","SJAG_02341"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[71214,105291,107519,105292,83831,99618],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0071218"},{"annotations":[105294,105293,98344],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0034620"},{"annotations":[104937,105040,105606,108827,103338],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0071629"},{"annotations":[75593,109017,111170,102525,109401,88555,111903,109271,96704,94224,112324,112480],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0030968"},{"annotations":[84978,98815,108200,83561],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0180027"},{"annotations":[88698,76797],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0036498"},{"annotations":[76514],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0034514"},{"annotations":[106117,75686],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0071630"}]},"cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a protein that is not folded in its correct three-dimensional structure.","definition_xrefs":["GOC:bf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to stress","termid":"GO:0006950"},{"relation_name":"is_a","term_name":"response to organic substance","termid":"GO:0010033"}],"gene_count":33,"genes_by_uniquename":{"SJAG_00054":null,"SJAG_00173":null,"SJAG_00219":null,"SJAG_00226":null,"SJAG_00270":null,"SJAG_00403":null,"SJAG_00530":null,"SJAG_00552":null,"SJAG_00564":null,"SJAG_00790":null,"SJAG_01160":null,"SJAG_01516":null,"SJAG_01556":null,"SJAG_01737":null,"SJAG_01768":null,"SJAG_02341":null,"SJAG_02419":null,"SJAG_02601":null,"SJAG_03345":null,"SJAG_03482":null,"SJAG_03611":null,"SJAG_03657":null,"SJAG_03815":null,"SJAG_04103":null,"SJAG_04118":null,"SJAG_04187":null,"SJAG_04262":null,"SJAG_04283":null,"SJAG_04435":null,"SJAG_04471":null,"SJAG_04567":null,"SJAG_04612":null,"SJAG_05022":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"response to topologically incorrect protein","references_by_uniquename":{"GO_REF:0000107":null,"PMID:21873635":null},"synonyms":[{"name":"response to misfolded or unfolded protein","type":"related"}],"termid":"GO:0035966","terms_by_termid":{"GO:0030968":null,"GO:0034514":null,"GO:0034620":null,"GO:0036498":null,"GO:0071218":null,"GO:0071629":null,"GO:0071630":null,"GO:0180027":null}}


id: GO:0007625
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The specific behavior of an organism relating to grooming, cleaning and brushing to remove dirt and parasites.","definition_xrefs":["GOC:pr","GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"behavior","termid":"GO:0007610"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"grooming behavior","synonyms":[{"name":"grooming behaviour","type":"exact"}],"termid":"GO:0007625"}


id: PBO:0003488
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"translation initiation factor eIF4E 4F complex subunit","termid":"PBO:0003488"}


id: GO:1904791
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of shelterin complex assembly.","definition_xrefs":["GOC:BHF","GO_REF:0000058","PMID:24270157","GOC:TermGenie","GOC:nc","GOC:BHF_telomere"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of protein-containing complex assembly","termid":"GO:0031333"},{"relation_name":"is_a","term_name":"regulation of shelterin complex assembly","termid":"GO:1904790"},{"relation_name":"negatively_regulates","term_name":"shelterin complex assembly","termid":"GO:0071573"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0065003"},{"rel_name":"regulates","termid":"GO:0044085"},{"rel_name":"negatively_regulates","termid":"GO:0065003"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0065003","GO:0044085","GO:0008150"],"is_obsolete":false,"name":"negative regulation of shelterin complex assembly","synonyms":[{"name":"down regulation of Pot1 complex assembly","type":"exact"},{"name":"down regulation of Pot1-Tpz1 complex assembly","type":"exact"},{"name":"down regulation of shelterin complex formation","type":"exact"},{"name":"down regulation of telosome assembly","type":"exact"},{"name":"down-regulation of Pot1 complex assembly","type":"exact"},{"name":"down-regulation of Pot1-Tpz1 complex assembly","type":"exact"},{"name":"down-regulation of shelterin complex formation","type":"exact"},{"name":"down-regulation of telosome assembly","type":"exact"},{"name":"downregulation of Pot1 complex assembly","type":"exact"},{"name":"downregulation of Pot1-Tpz1 complex assembly","type":"exact"},{"name":"downregulation of shelterin complex formation","type":"exact"},{"name":"downregulation of telosome assembly","type":"exact"},{"name":"inhibition of Pot1 complex assembly","type":"narrow"},{"name":"inhibition of Pot1-Tpz1 complex assembly","type":"narrow"},{"name":"inhibition of shelterin complex formation","type":"narrow"},{"name":"inhibition of telosome assembly","type":"narrow"},{"name":"negative regulation of Pot1 complex assembly","type":"exact"},{"name":"negative regulation of Pot1-Tpz1 complex assembly","type":"exact"},{"name":"negative regulation of shelterin complex formation","type":"exact"},{"name":"negative regulation of telosome assembly","type":"exact"}],"termid":"GO:1904791"}


id: PBO:0089202
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"60S ribosomal protein L31","termid":"PBO:0089202"}


id: PBO:0002154
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ESCRT III complex subunit Vps32","termid":"PBO:0002154"}


id: RO:HOM0000030
data:
  {"annotation_feature_type":"gene","cv_name":"relationship","definition":"Heterochronous homology that is produced by a maturation of individuals of a species past adulthood, which take on hitherto unseen traits.","direct_ancestors":[{"relation_name":"is_a","term_name":"in_heterochronous_homology_relationship_with","termid":"RO:HOM0000028"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"in_peramorphosis_relationship_with","termid":"RO:HOM0000030"}


id: PR:Q09835
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- gos1 gene.","definition_xrefs":["UniProtKB:Q09835","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protein transport protein gos1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC4G8.10","synonyms":[{"name":"Golgi SNAP receptor complex member 1 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Golgi SNARE protein 1 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-gos1","type":"exact"}],"termid":"PR:Q09835"}


id: PBO:0063908
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 alpha","termid":"PBO:0063908"}


id: GO:0047563
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 3-hydroxybenzoate + AH(2) + O2 = 2,3-dihydroxybenzoate + A + H2O.","definition_xrefs":["RHEA:14193","EC:1.14.99.23"],"direct_ancestors":[{"relation_name":"is_a","term_name":"monooxygenase activity","termid":"GO:0004497"},{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen","termid":"GO:0016705"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016491"],"is_obsolete":false,"name":"3-hydroxybenzoate 2-monooxygenase activity","secondary_identifiers":["MetaCyc:3-HYDROXYBENZOATE-2-MONOOXYGENASE-RXN","KEGG_REACTION:R01508"],"synonyms":[{"name":"3-HBA-2-hydroxylase activity","type":"related"},{"name":"3-hydroxybenzoate 2-hydroxylase activity","type":"exact"},{"name":"3-hydroxybenzoate,hydrogen-donor:oxygen oxidoreductase (2-hydroxylating)","type":"related"}],"termid":"GO:0047563"}


id: FYPO:0003976
data:
  {"alleles_by_uniquename":{"SJAG_04464:allele-1":{"allele_type":"amino_acid_mutation","description":"R152C","gene_uniquename":"SJAG_04464","name":"pim1-R152C","synonyms":[{"name":"Inferred CDK-phospho-mimic mutation","reference":"PMID:28954740","type":"exact"}],"uniquename":"SJAG_04464:allele-1"}},"annotation_feature_type":"genotype","cv_annotations":{"single_locus_phenotype":[{"annotations":[114475],"is_not":false,"summary":null,"term":"FYPO:0003976"}]},"cv_name":"fission_yeast_phenotype","definition":"A cell morphology phenotype in which a vegetatively growing cell is inviable, and has a nuclear envelope that is broken into multiple small fragments during mitotic telophase.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"has_part","term_name":"inviable vegetative cell","termid":"FYPO:0001489"},{"relation_name":"has_part","term_name":"fragmented nuclear envelope","termid":"FYPO:0003975"},{"relation_name":"is_a","term_name":"inviable vegetative cell","termid":"FYPO:0001489"},{"relation_name":"is_a","term_name":"fragmented nuclear envelope","termid":"FYPO:0003975"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04464":null},"genotype_count":1,"genotypes_by_uniquename":{"pim1-R152C-R152C-amino_acid_mutation-expression-not_assayed_or_wild_type":{"display_name":"pim1-R152C(aa)","display_uniquename":"pim1-R152C-R152C-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04464:allele-1","expression":"Not assayed or wild type"}]}]}},"interesting_parent_details":[{"rel_name":"output_of","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"has_part","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000004"},{"rel_name":"is_a","termid":"FYPO:0002403"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"has_part","termid":"FYPO:0000004"},{"rel_name":"has_part","termid":"FYPO:0002403"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"has_part","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0002403","FYPO:0000002","FYPO:0000004","FYPO:0005447","FYPO:0001985","FYPO:0001320"],"is_obsolete":false,"name":"inviable vegetative cell with fragmented nuclear envelope during mitotic telophase","references_by_uniquename":{"PMID:28954740":null},"single_locus_annotated_genes":["SJAG_04464"],"single_locus_genotype_uniquenames":["pim1-R152C-R152C-amino_acid_mutation-expression-not_assayed_or_wild_type"],"synonyms":[{"name":"inviable cell with fragmented nuclear envelope during mitotic telophase during vegetative growth","type":"exact"},{"name":"inviable vegetative cell with fragmented nuclear envelope during telophase of mitotic cell cycle","type":"related"},{"name":"lethal; vegetative cell with fragmented nuclear envelope during mitotic telophase","type":"exact"}],"termid":"FYPO:0003976","terms_by_termid":{"FYECO:0000004":null,"FYPO:0003976":null}}


id: GO:0047616
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: acyl-CoA + NADP+ = 2,3-dehydroacyl-CoA + NADPH + H+.","definition_xrefs":["EC:1.3.1.8","MetaCyc:ACYL-COA-DEHYDROGENASE-NADP+-RXN"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor","termid":"GO:0016628"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016491","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"acyl-CoA dehydrogenase (NADP+) activity","secondary_identifiers":["RHEA:22460"],"synonyms":[{"name":"2-enoyl-CoA reductase activity","type":"related"},{"name":"acyl-CoA:NADP+ 2-oxidoreductase activity","type":"related"},{"name":"crotonyl coenzyme A reductase activity","type":"related"},{"name":"dehydrogenase, acyl coenzyme A (nicotinamide adenine dinucleotide phosphate)","type":"related"},{"name":"enoyl coenzyme A reductase activity","type":"related"}],"termid":"GO:0047616"}


id: MOD:00866
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-proline residue to one of several dihydroxylated proline residues, such as (2S,3R,4R)-3,4-dihydroxyproline or (2S,3R,4S)-3,4-dihydroxyproline.","definition_xrefs":["PubMed:18688235"],"direct_ancestors":[{"relation_name":"is_a","term_name":"dihydroxylated residue","termid":"MOD:00428"},{"relation_name":"is_a","term_name":"hydroxylated proline","termid":"MOD:00678"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dihydroxylated proline","synonyms":[{"name":"Hy2Pro","type":"exact"}],"termid":"MOD:00866"}


id: GO:0006935
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The directed movement of a motile cell or organism, or the directed growth of a cell guided by a specific chemical concentration gradient. Movement may be towards a higher concentration (positive chemotaxis) or towards a lower concentration (negative chemotaxis).","definition_xrefs":["ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"taxis","termid":"GO:0042330"},{"relation_name":"part_of","term_name":"response to chemical","termid":"GO:0042221"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"chemotaxis","secondary_identifiers":["Wikipedia:Chemotaxis"],"synonyms":[{"name":"taxis in response to chemical stimulus","type":"exact"}],"termid":"GO:0006935"}


id: PBO:0080969
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger and BTB domain containing 8A","termid":"PBO:0080969"}


id: GO:0003827
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 3-(alpha-D-mannosyl)-beta-D-mannosyl-R + UDP-N-acetyl-alpha-D-glucosamine = 3-(2-[N-acetyl-beta-D-glucosaminyl]-alpha-D-mannosyl)-beta-D-mannosyl-R + H+ + UDP.","definition_xrefs":["RHEA:11456","EC:2.4.1.101"],"direct_ancestors":[{"relation_name":"is_a","term_name":"acetylglucosaminyltransferase activity","termid":"GO:0008375"},{"relation_name":"is_a","term_name":"catalytic activity, acting on a glycoprotein","termid":"GO:0140103"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0140096"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016757"}],"interesting_parent_ids":["GO:0003824","GO:0016757","GO:0016740","GO:0003674","GO:0140096"],"is_obsolete":false,"name":"alpha-1,3-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity","secondary_identifiers":["MetaCyc:2.4.1.101-RXN","KEGG_REACTION:R05983","Reactome:R-HSA-964768"],"synonyms":[{"name":"GNTI activity","type":"related"},{"name":"GnTI","type":"related"},{"name":"N-acetylglucosaminyltransferase I activity","type":"related"},{"name":"N-glycosyl-oligosaccharide-glycoprotein N-acetylglucosaminyltransferase I activity","type":"related"},{"name":"UDP-N-acetyl-D-glucosamine:3-(alpha-D-mannosyl)-beta-D-mannosyl-glycoprotein 2-beta-N-acetyl-D-glucosaminyltransferase activity","type":"related"},{"name":"UDP-N-acetylglucosaminyl:alpha-1,3-D-mannoside-beta-1,2-N-acetylglucosaminyltransferase I activity","type":"related"},{"name":"UDP-N-acetylglucosaminyl:alpha-3-D-mannoside beta-1,2-N-acetylglucosaminyltransferase I activity","type":"related"},{"name":"alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase activity","type":"related"},{"name":"alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase activity","type":"related"},{"name":"alpha-1,3-mannosylglycoprotein beta-1,2-N-acetylglucosaminyltransferase activity","type":"exact"},{"name":"uridine diphosphoacetylglucosamine-alpha-1,3-mannosylglycoprotein beta-1,2-N-acetylglucosaminyltransferase activity","type":"related"}],"termid":"GO:0003827"}


id: GO:0043559
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to insulin, a polypeptide hormone produced by the islets of Langerhans of the pancreas in mammals, and by the homologous organs of other organisms.","definition_xrefs":["ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein binding","termid":"GO:0005515"},{"relation_name":"is_a","term_name":"peptide hormone binding","termid":"GO:0017046"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005515"},{"rel_name":"is_a","termid":"GO:0005488"}],"interesting_parent_ids":["GO:0005515","GO:0005488","GO:0003674"],"is_obsolete":false,"name":"insulin binding","termid":"GO:0043559"}


id: GO:0021943
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The formation of scaffolds from a radial glial cell. The scaffolds are used as a substrate for the radial migration of cells.","definition_xrefs":["GOC:cls","GOC:dgh","PMID:15157725","GOC:jid","GOC:dph","GO_REF:0000021"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell morphogenesis","termid":"GO:0000902"},{"relation_name":"part_of","term_name":"hindbrain radial glia guided cell migration","termid":"GO:0021932"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"formation of radial glial scaffolds","synonyms":[{"name":"Bergmann fiber biosynthesis","type":"related"},{"name":"Bergmann fiber formation","type":"related"}],"termid":"GO:0021943"}


id: PBO:0083015
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Defining member of the SET3 histone deacetylase complex; which is a meiosis-specific repressor of sporulation genes; necessary for efficient transcription by RNAPII; one of two yeast proteins that contains both SET and PHD domains; SET3 has a paralog, SET4, that arose from the whole genome duplication","termid":"PBO:0083015"}


id: GO:0042707
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which the developmental fate of a cell becomes restricted such that it will develop into photoreceptor cell in the ocellus. A photoreceptor cell is a cell that responds to incident electromagnetic radiation. Different classes of photoreceptor have different spectral sensitivities and express different photosensitive pigments.","definition_xrefs":["GOC:mtg_sensu"],"direct_ancestors":[{"relation_name":"is_a","term_name":"photoreceptor cell fate commitment","termid":"GO:0046552"},{"relation_name":"part_of","term_name":"ocellus photoreceptor cell differentiation","termid":"GO:0042705"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"ocellus photoreceptor cell fate commitment","termid":"GO:0042707"}


id: GO:1905867
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of an epididymis over time, from its formation to the mature structure.","definition_xrefs":["GO_REF:0000094","GOC:TermGenie","PMID:12388089"],"direct_ancestors":[{"relation_name":"is_a","term_name":"tube development","termid":"GO:0035295"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"epididymis development","synonyms":[{"name":"epididymus development","type":"exact"}],"termid":"GO:1905867"}


id: PBO:0078199
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"T cell receptor beta variable 6-1","termid":"PBO:0078199"}


id: GO:0018352
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The formation of a linkage between a protein amino acid and pyridoxal-5-phosphate.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein modification process","termid":"GO:0036211"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"protein-pyridoxal-5-phosphate linkage","termid":"GO:0018352"}


id: GO:0000962
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways involving catabolism in the mitochondrion of RNA transcribed from the mitochondrial genome.","definition_xrefs":["GOC:mah","GOC:krc"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of mitochondrial RNA catabolic process","termid":"GO:0000960"},{"relation_name":"is_a","term_name":"positive regulation of cellular catabolic process","termid":"GO:0031331"},{"relation_name":"is_a","term_name":"positive regulation of RNA metabolic process","termid":"GO:0051254"},{"relation_name":"positively_regulates","term_name":"mitochondrial RNA catabolic process","termid":"GO:0000957"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"positively_regulates","termid":"GO:0044248"},{"rel_name":"regulates","termid":"GO:0044248"}],"interesting_parent_ids":["GO:0008150","GO:0044248"],"is_obsolete":false,"name":"positive regulation of mitochondrial RNA catabolic process","termid":"GO:0000962"}


id: FYPO:0002265
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of galactomannan measured in the cell wall is lower than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased galactomannan level","termid":"FYPO:0001195"},{"relation_name":"is_a","term_name":"decreased cell wall polysaccharide level","termid":"FYPO:0002266"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0002946"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0002946","FYPO:0000002","FYPO:0001985","FYPO:0005447"],"is_obsolete":false,"name":"decreased cell wall galactomannan level","synonyms":[{"name":"decreased cell wall galactomannan accumulation","type":"related"},{"name":"decreased cell wall galactomannan level during mitotic cell cycle","type":"related"},{"name":"decreased cell wall galactomannan level during vegetative growth","type":"exact"},{"name":"reduced cell wall galactomannan level","type":"exact"}],"termid":"FYPO:0002265"}


id: PBO:0057370
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 548al","termid":"PBO:0057370"}


id: FYPO:0007839
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which the observed rate of peptide alpha-N-acetyltransferase activity is abnormal.","definition_xrefs":["PomBase:mah","PMID:34019809"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal catalytic activity","termid":"FYPO:0000661"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000661"},{"rel_name":"is_a","termid":"FYPO:0000707"},{"rel_name":"is_a","termid":"FYPO:0000654"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000707","FYPO:0000652","FYPO:0000661","FYPO:0000654"],"is_obsolete":false,"name":"abnormal peptide alpha-N-acetyltransferase activity","synonyms":[{"name":"abnormal NAT activity","type":"related"},{"name":"abnormal protein N-terminal acetyltransferase activity","type":"exact"}],"termid":"FYPO:0007839"}


id: FYPO:0001503
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which the observed rate of alpha,alpha-trehalase activity is lower than normal during sporulation.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased catalytic activity","termid":"FYPO:0000663"},{"relation_name":"is_a","term_name":"abnormal alpha,alpha-trehalase activity","termid":"FYPO:0001479"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000654"},{"rel_name":"is_a","termid":"FYPO:0000661"},{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0000707"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000707","FYPO:0000661","FYPO:0000652","FYPO:0000654"],"is_obsolete":false,"name":"decreased alpha,alpha-trehalase activity during sporulation","synonyms":[{"name":"decreased neutral trehalase activity during sporulation","type":"exact"},{"name":"decreased trehalase activity during sporulation","type":"broad"},{"name":"reduced alpha,alpha-trehalase activity during sporulation","type":"exact"}],"termid":"FYPO:0001503"}


id: PBO:0000565
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"carbamoyl-phosphate synthase (glutamine hydrolyzing), aspartate carbamoyltransferase Ura1","termid":"PBO:0000565"}


id: GO:0060998
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the rate, frequency, or extent of dendritic spine development, the process whose specific outcome is the progression of the dendritic spine over time, from its formation to the mature structure.","definition_xrefs":["GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of developmental process","termid":"GO:0050793"},{"relation_name":"regulates","term_name":"dendritic spine development","termid":"GO:0060996"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of dendritic spine development","termid":"GO:0060998"}


id: PBO:0074666
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nucleolar RNA, H/ACA box 52","termid":"PBO:0074666"}


id: MOD:00722
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively replaces one hydrogen atom of an L-glutamine residue with one methyl group.","definition_xrefs":["Unimod:34#Q","OMSSA:14"],"direct_ancestors":[{"relation_name":"is_a","term_name":"monomethylated residue","termid":"MOD:00599"},{"relation_name":"is_a","term_name":"methylated glutamine","termid":"MOD:00659"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:00427"}],"interesting_parent_ids":["MOD:00427"],"is_obsolete":false,"name":"monomethylated L-glutamine","synonyms":[{"name":"Me1Gln","type":"exact"},{"name":"methylq","type":"exact"}],"termid":"MOD:00722"}


id: PBO:0059512
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrially encoded replication primer","termid":"PBO:0059512"}


id: GO:1902072
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of hypoxia-inducible factor-1alpha signaling pathway.","definition_xrefs":["GOC:TermGenie","GOC:bf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of signal transduction","termid":"GO:0009968"},{"relation_name":"is_a","term_name":"negative regulation of cellular response to hypoxia","termid":"GO:1900038"},{"relation_name":"is_a","term_name":"regulation of hypoxia-inducible factor-1alpha signaling pathway","termid":"GO:1902071"},{"relation_name":"negatively_regulates","term_name":"hypoxia-inducible factor-1alpha signaling pathway","termid":"GO:0097411"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"negatively_regulates","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"negative regulation of hypoxia-inducible factor-1alpha signaling pathway","synonyms":[{"name":"down regulation of HIF1alpha pathway","type":"exact"},{"name":"down regulation of hypoxia-inducible factor-1alpha signaling pathway","type":"exact"},{"name":"down regulation of hypoxia-inducible factor-1alpha signalling pathway","type":"exact"},{"name":"down-regulation of HIF1alpha pathway","type":"exact"},{"name":"down-regulation of hypoxia-inducible factor-1alpha signaling pathway","type":"exact"},{"name":"down-regulation of hypoxia-inducible factor-1alpha signalling pathway","type":"exact"},{"name":"downregulation of HIF1alpha pathway","type":"exact"},{"name":"downregulation of hypoxia-inducible factor-1alpha signaling pathway","type":"exact"},{"name":"downregulation of hypoxia-inducible factor-1alpha signalling pathway","type":"exact"},{"name":"inhibition of HIF1alpha pathway","type":"exact"},{"name":"inhibition of hypoxia-inducible factor-1alpha signaling pathway","type":"narrow"},{"name":"inhibition of hypoxia-inducible factor-1alpha signalling pathway","type":"exact"},{"name":"negative regulation of HIF1alpha pathway","type":"exact"},{"name":"negative regulation of hypoxia-inducible factor-1alpha signalling pathway","type":"exact"}],"termid":"GO:1902072"}


id: GO:1904527
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of microtubule binding.","definition_xrefs":["GOC:als","GO_REF:0000059","PMID:24520051","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of protein binding","termid":"GO:0032091"},{"relation_name":"is_a","term_name":"regulation of microtubule binding","termid":"GO:1904526"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of microtubule binding","synonyms":[{"name":"down regulation of microtubule binding","type":"exact"},{"name":"down regulation of microtubule severing activity","type":"related"},{"name":"down regulation of microtubule/chromatin interaction","type":"related"},{"name":"down-regulation of microtubule binding","type":"exact"},{"name":"down-regulation of microtubule severing activity","type":"related"},{"name":"down-regulation of microtubule/chromatin interaction","type":"related"},{"name":"downregulation of microtubule binding","type":"exact"},{"name":"downregulation of microtubule severing activity","type":"related"},{"name":"downregulation of microtubule/chromatin interaction","type":"related"},{"name":"inhibition of microtubule binding","type":"narrow"},{"name":"inhibition of microtubule severing activity","type":"related"},{"name":"inhibition of microtubule/chromatin interaction","type":"related"},{"name":"negative regulation of microtubule severing activity","type":"related"},{"name":"negative regulation of microtubule/chromatin interaction","type":"related"}],"termid":"GO:1904527"}


id: FYPO:0000715
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A phenotype observed in the vegetative growth phase of the life cycle in which cells show increased sensitivity to K-252a. Cells stop growing (and may die) at a concentration of K-252a that allows wild type cells to grow.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased sensitivity to chemical during vegetative growth","termid":"FYPO:0000127"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000003"},{"rel_name":"is_a","termid":"FYPO:0000139"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0002683"}],"interesting_parent_ids":["FYPO:0002683","FYPO:0001985","FYPO:0000003","FYPO:0000139","FYPO:0005447"],"is_obsolete":false,"name":"sensitive to K-252a","synonyms":[{"name":"hypersensitive to K-252a","type":"exact"},{"name":"sensitive to K-252a during mitotic cell cycle","type":"related"},{"name":"sensitive to K-252a during vegetative growth","type":"exact"}],"termid":"FYPO:0000715"}


id: GO:0003812
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the cleavage of Arg-Ser bond in complement component C3 alpha-chain to yield C3a and C3b, and Arg bond in complement component C5 alpha-chain to yield C5a and C5b.","definition_xrefs":["GOC:curators"],"gene_count":0,"genotype_count":0,"name":"obsolete alternative-complement-pathway C3/C5 convertase activity (obsolete GO:0003812)","synonyms":[{"name":"(C3b)n,Bb","type":"related"},{"name":"(CVF)-dependent glycine-rich-beta-glucoprotein","type":"related"},{"name":"C3 convertase activity","type":"broad"},{"name":"C3 proactivator","type":"related"},{"name":"C3b,Bb,CVF,Bb,C5 convertase activity","type":"related"},{"name":"C5 convertase activity","type":"broad"},{"name":"CVF,Bb","type":"related"},{"name":"alternative complement pathway C3(C5) convertase activity","type":"related"},{"name":"alternative-complement-pathway C3/C5 convertase activity","type":"exact"},{"name":"cobra venom factor-dependent C3 convertase","type":"narrow"},{"name":"complement C 3(C 5) convertase (amplification)","type":"related"},{"name":"complement component C3/C5 convertase (alternative) activity","type":"related"},{"name":"complement factor B activity","type":"related"},{"name":"glycine-rich beta-glycoprotein","type":"related"},{"name":"heat-labile factor","type":"related"},{"name":"proenzyme factor B","type":"exact"},{"name":"properdin factor B activity","type":"related"}],"termid":"GO:0003812"}


id: PBO:0053970
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1281","termid":"PBO:0053970"}


id: PBO:0051805
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"IQSEC3 antisense RNA 1","termid":"PBO:0051805"}


id: GO:0072034
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Signaling at short range between cells of the ureteric bud terminus and the kidney mesenchyme that positively regulates the formation of the renal vesicle.","definition_xrefs":["GOC:mtg_kidney_jan10"],"direct_ancestors":[{"relation_name":"is_a","term_name":"developmental induction","termid":"GO:0031128"},{"relation_name":"is_a","term_name":"positive regulation of kidney development","termid":"GO:0090184"},{"relation_name":"is_a","term_name":"positive regulation of animal organ morphogenesis","termid":"GO:0110110"},{"relation_name":"is_a","term_name":"positive regulation of morphogenesis of an epithelium","termid":"GO:1905332"},{"relation_name":"positively_regulates","term_name":"renal vesicle formation","termid":"GO:0072033"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"renal vesicle induction","synonyms":[{"name":"nephron induction","type":"exact"},{"name":"positive regulation of nephron formation","type":"exact"}],"termid":"GO:0072034"}


id: FYPO:0006402
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which trimethylation of lysine at position 36 of histone H3 in one or more promoter regions does not occur.","definition_xrefs":["PomBase:mah","PMID:28903048"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abolished histone H3-K36 trimethylation during vegetative growth","termid":"FYPO:0006261"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0002494"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0002274"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001985","FYPO:0005447","FYPO:0002494","FYPO:0001320","FYPO:0002274"],"is_obsolete":false,"name":"abolished histone H3-K36 trimethylation at promoter during vegetative growth","synonyms":[{"name":"abolished histone H3 K36 trimethylation at promoter during vegetative growth","type":"exact"},{"name":"abolished histone H3-K36 trimethylation at promoter during mitotic cell cycle","type":"related"},{"name":"abolished histone H3K36me3 at promoter during vegetative growth","type":"exact"},{"name":"abolished histone lysine H3 K36 trimethylation at promoter during vegetative growth","type":"exact"},{"name":"histone H3-K36 trimethylation abolished at promoter during vegetative growth","type":"exact"},{"name":"histone H3-K36 trimethylation absent at promoter during vegetative growth","type":"exact"}],"termid":"FYPO:0006402"}


id: PBO:0065390
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protein serine kinase H2","termid":"PBO:0065390"}


id: PBO:0057303
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 514b","termid":"PBO:0057303"}


id: PBO:0049382
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"general transcription factor IIIC subunit 4","termid":"PBO:0049382"}


id: PBO:0061199
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NOBOX oogenesis homeobox","termid":"PBO:0061199"}


id: PBO:0057870
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 3179-3","termid":"PBO:0057870"}


id: GO:0044070
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of the directed movement of anions, atoms or small molecules with a net negative charge into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of monoatomic ion transport","termid":"GO:0043269"},{"relation_name":"regulates","term_name":"monoatomic anion transport","termid":"GO:0006820"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006810","GO:0008150"],"is_obsolete":false,"name":"regulation of monoatomic anion transport","synonyms":[{"name":"regulation of anion transport","type":"broad"}],"termid":"GO:0044070"}


id: GO:0034318
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the transfer of an acyl group to an oxygen atom on an alcohol acceptor molecule.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"O-acyltransferase activity","termid":"GO:0008374"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016746"},{"rel_name":"is_a","termid":"GO:0016740"}],"interesting_parent_ids":["GO:0016746","GO:0003824","GO:0016740","GO:0003674"],"is_obsolete":false,"name":"alcohol O-acyltransferase activity","synonyms":[{"name":"AEATase activity","type":"narrow"},{"name":"acyl-CoA:alcohol O-acyltransferase activity","type":"exact"},{"name":"acyl-CoA:ethanol O-acyltransferase","type":"narrow"},{"name":"acyl-coenzymeA:alcohol O-acyltransferase activity","type":"exact"},{"name":"acyl-coenzymeA:ethanol O-acyltransferase activity","type":"narrow"},{"name":"alcohol acyltransferase activity","type":"exact"}],"termid":"GO:0034318"}


id: PBO:0072996
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Scm polycomb group protein like 4","termid":"PBO:0072996"}


id: GO:0031508
data:
  {"annotated_genes":["SJAG_00756","SJAG_04574","SJAG_00934","SJAG_01008","SJAG_00961","SJAG_04253","SJAG_04141","SJAG_03356","SJAG_03689","SJAG_02409","SJAG_03042","SJAG_02725","SJAG_04039","SJAG_01540","SJAG_02119","SJAG_03916","SJAG_02846","SJAG_02594","SJAG_01579","SJAG_01204","SJAG_01599","SJAG_04061","SJAG_00087","SJAG_03844","SJAG_03982","SJAG_01075","SJAG_03193","SJAG_04030","SJAG_00414","SJAG_02621","SJAG_02778","SJAG_03624","SJAG_01601","SJAG_00058"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[85749,87698,89054,98202,99504,103494,104629,107351,108501,109608],"is_not":false,"summary":null,"term":"GO:0031508"},{"annotations":[95778,92731],"is_not":false,"rel_names":["regulates"],"summary":null,"term":"GO:0090052"},{"annotations":[113160,108880,90901,92281,109751,113848,105760,89688,106457,95044,107448,84507,110565,111130,86919,94639,101912,105922,109499,112782,113054,84562],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0140727"}]},"cv_name":"biological_process","definition":"The compaction of chromatin located adjacent to the CENP-A rich centromere 'central core' and characterized by methylation of histone H3K9, into heterochromatin, resulting in the repression of transcription at pericentric DNA.","definition_xrefs":["PMID:20206496","PMID:14612388","GOC:mah","PMID:22729156"],"direct_ancestors":[{"relation_name":"is_a","term_name":"constitutive heterochromatin formation","termid":"GO:0140719"}],"gene_count":34,"genes_by_uniquename":{"SJAG_00058":null,"SJAG_00087":null,"SJAG_00414":null,"SJAG_00756":null,"SJAG_00934":null,"SJAG_00961":null,"SJAG_01008":null,"SJAG_01075":null,"SJAG_01204":null,"SJAG_01540":null,"SJAG_01579":null,"SJAG_01599":null,"SJAG_01601":null,"SJAG_02119":null,"SJAG_02409":null,"SJAG_02594":null,"SJAG_02621":null,"SJAG_02725":null,"SJAG_02778":null,"SJAG_02846":null,"SJAG_03042":null,"SJAG_03193":null,"SJAG_03356":null,"SJAG_03624":null,"SJAG_03689":null,"SJAG_03844":null,"SJAG_03916":null,"SJAG_03982":null,"SJAG_04030":null,"SJAG_04039":null,"SJAG_04061":null,"SJAG_04141":null,"SJAG_04253":null,"SJAG_04574":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006325"},{"rel_name":"regulates","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"negatively_regulates","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0006325","GO:0010467","GO:0008150"],"is_obsolete":false,"name":"pericentric heterochromatin formation","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["GO:1990141","GO:0030702"],"synonyms":[{"name":"centric heterochromatin formation","type":"related"},{"name":"centromere chromatin silencing","type":"exact"},{"name":"centromeric heterochromatin biosynthesis","type":"exact"},{"name":"centromeric heterochromatin formation","type":"exact"},{"name":"centromeric silencing","type":"exact"},{"name":"chromatin silencing at centromere","type":"exact"},{"name":"chromatin silencing at centromere outer repeat region","type":"narrow"},{"name":"chromatin silencing at pericentric region","type":"related"},{"name":"heterochromatic silencing at centromere","type":"exact"},{"name":"pericentric heterochromatin assembly","type":"exact"}],"termid":"GO:0031508","terms_by_termid":{"GO:0031508":null,"GO:0090052":null,"GO:0140727":null}}


id: PBO:0001466
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"gluconokinase","termid":"PBO:0001466"}


id: PBO:0051917
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"integrin subunit beta 2","termid":"PBO:0051917"}


id: PR:Q09922
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPAC1F7.11c gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q09922"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized transcriptional regulatory protein C1F7.11c (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC1F7.11c","synonyms":[{"name":"Spom972h-SPAC1F7.11c","type":"exact"}],"termid":"PR:Q09922"}


id: PBO:0045174
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DNAJA2 divergent transcript","termid":"PBO:0045174"}


id: GO:0075519
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The directed movement of the viral genome or viral particle within the host cell cytoplasm along host microtubules. Microtubule-dependent transport involves motor proteins like dynein and kinesin and is mostly used by viruses that target their genomes to the nucleus.","definition_xrefs":["VZ:983"],"direct_ancestors":[{"relation_name":"is_a","term_name":"intracellular transport of virus","termid":"GO:0075733"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"microtubule-dependent intracellular transport of viral material","termid":"GO:0075519"}


id: GO:0060699
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the rate, frequency or extent of the catalysis of the hydrolysis of ester linkages within ribonucleic acid by creating internal breaks.","definition_xrefs":["GOC:tb","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of ribonuclease activity","termid":"GO:0060700"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of endoribonuclease activity","termid":"GO:0060699"}


id: GO:0072527
data:
  {"annotated_genes":["SJAG_00381","SJAG_00197","SJAG_02874","SJAG_04713","SJAG_00533","SJAG_02420","SJAG_03213","SJAG_00392","SJAG_00957","SJAG_02047","SJAG_00827","SJAG_04627","SJAG_04665","SJAG_04709","SJAG_04354","SJAG_05029","SJAG_04712","SJAG_04264","SJAG_02421","SJAG_05024","SJAG_00964","SJAG_02593","SJAG_03164","SJAG_03362","SJAG_03676","SJAG_01673","SJAG_03771","SJAG_04487","SJAG_00412","SJAG_01742","SJAG_04067","SJAG_01970","SJAG_03708","SJAG_00694","SJAG_02406","SJAG_00444","SJAG_02887","SJAG_04657","SJAG_04866","SJAG_00885","SJAG_00779","SJAG_04282","SJAG_03538"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[83552],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0044210"},{"annotations":[110713,71326,83553,71682,71824,70296,73591,73110,106330],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006207"},{"annotations":[94014,85164,89021,107158,111846],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0044205"},{"annotations":[78833],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0046705"},{"annotations":[102605,88052],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0046704"},{"annotations":[68147],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0009224"},{"annotations":[95549],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006241"},{"annotations":[109164],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0046036"},{"annotations":[88573,110087],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0044211"},{"annotations":[70138],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0009972"},{"annotations":[91054,102606,88053],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006240"},{"annotations":[70954],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006233"},{"annotations":[103704,78305],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006231"},{"annotations":[70955,88055,85093],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006235"},{"annotations":[70953],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006227"},{"annotations":[103705,77976],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006226"},{"annotations":[77974],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0046081"},{"annotations":[84201],"is_not":false,"rel_names":["regulates","positively_regulates"],"summary":null,"term":"GO:1903931"},{"annotations":[84759,108890],"is_not":false,"rel_names":["positively_regulates","regulates"],"summary":null,"term":"GO:0090180"},{"annotations":[110088,83227,84915,74030],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006206"},{"annotations":[86332],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0046135"},{"annotations":[100864,102610],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006213"},{"annotations":[93267,109025],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0043097"},{"annotations":[73107],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0046132"},{"annotations":[86333],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0008655"},{"annotations":[77288,102723,73604,73648,70501,76156],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0009228"},{"annotations":[108802,111162,109208,89881,108796,76981],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0009229"},{"annotations":[58975,66261],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006772"},{"annotations":[95010,105722,105721],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0036172"},{"annotations":[78837],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006225"},{"annotations":[75494],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006256"},{"annotations":[87600,88574,84197,110089,83228],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0044206"},{"annotations":[87601],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006223"},{"annotations":[95551,71327,71825],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006228"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways involving a pyrimidine-containing compound, i.e. any compound that contains pyrimidine or a formal derivative thereof.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular nitrogen compound metabolic process","termid":"GO:0034641"},{"relation_name":"is_a","term_name":"heterocycle metabolic process","termid":"GO:0046483"},{"relation_name":"is_a","term_name":"organic cyclic compound metabolic process","termid":"GO:1901360"},{"relation_name":"is_a","term_name":"organonitrogen compound metabolic 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id: GO:0004135
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the hydrolysis of (1->6)-alpha-D-glucosidic branch linkages in glycogen phosphorylase limit dextrin. Limit dextrin is the highly branched core that remains after exhaustive treatment of glycogen with glycogen phosphorylase. It is formed because these enzymes cannot hydrolyze the (1->6) glycosidic linkages present.","definition_xrefs":["EC:3.2.1.33","ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"alpha-glucosidase activity","termid":"GO:0090599"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0016798"}],"interesting_parent_ids":["GO:0003824","GO:0016798","GO:0003674","GO:0016787"],"is_obsolete":false,"name":"amylo-alpha-1,6-glucosidase activity","secondary_identifiers":["MetaCyc:3.2.1.33-RXN","Reactome:R-HSA-71593"],"synonyms":[{"name":"amylo-1,6-glucosidase activity","type":"exact"},{"name":"amylopectin 1,6-glucosidase activity","type":"related"},{"name":"dextrin 6-alpha-D-glucosidase activity","type":"related"},{"name":"dextrin-1,6-glucosidase activity","type":"related"},{"name":"glycogen phosphorylase-limit dextrin alpha-1,6-glucohydrolase activity","type":"related"}],"termid":"GO:0004135"}


id: PBO:0044968
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dehydrogenase/reductase X-linked","termid":"PBO:0044968"}


id: PBO:0089783
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TRAPP II complex subunit Trs130","termid":"PBO:0089783"}


id: GO:0032961
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of inositol trisphosphate.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of inositol phosphate biosynthetic process","termid":"GO:0010920"},{"relation_name":"is_a","term_name":"regulation of inositol trisphosphate biosynthetic process","termid":"GO:0032960"},{"relation_name":"negatively_regulates","term_name":"inositol trisphosphate biosynthetic process","termid":"GO:0032959"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0005975"},{"rel_name":"negatively_regulates","termid":"GO:0044281"},{"rel_name":"regulates","termid":"GO:0044281"},{"rel_name":"negatively_regulates","termid":"GO:0005975"}],"interesting_parent_ids":["GO:0044281","GO:0008150","GO:0005975"],"is_obsolete":false,"name":"negative regulation of inositol trisphosphate biosynthetic process","synonyms":[{"name":"negative regulation of IP3 biosynthesis","type":"exact"},{"name":"negative regulation of IP3 biosynthetic process","type":"exact"},{"name":"negative regulation of inositol trisphosphate anabolism","type":"exact"},{"name":"negative regulation of inositol trisphosphate biosynthesis","type":"exact"},{"name":"negative regulation of inositol trisphosphate formation","type":"exact"},{"name":"negative regulation of inositol trisphosphate synthesis","type":"exact"},{"name":"negative regulation of myo-inositol trisphosphate biosynthesis","type":"narrow"},{"name":"negative regulation of myo-inositol trisphosphate biosynthetic process","type":"narrow"}],"termid":"GO:0032961"}


id: PBO:0057222
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 378j","termid":"PBO:0057222"}


id: GO:1905649
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of shell calcification.","definition_xrefs":["PMID:14648763","GOC:TermGenie","GO_REF:0000058"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of biomineral tissue development","termid":"GO:0070168"},{"relation_name":"is_a","term_name":"regulation of shell calcification","termid":"GO:1905648"},{"relation_name":"negatively_regulates","term_name":"shell calcification","termid":"GO:0031215"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of shell calcification","synonyms":[{"name":"down regulation of shell calcification","type":"exact"},{"name":"down-regulation of shell calcification","type":"exact"},{"name":"downregulation of shell calcification","type":"exact"},{"name":"inhibition of shell calcification","type":"narrow"}],"termid":"GO:1905649"}


id: GO:0038143
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A heterodimeric complex between the tyrosine kinase receptor ERBB2 and a ligand-activated receptor ERBB3. ERBB2, which does not bind any known ligand, is activated through formation of a heterodimer with another ligand-activated ERBB family member such as ERBB3.","definition_xrefs":["Reactome:R-HSA-1247502","Reactome:R-HSA-1963589","PMID:8665853","GOC:signaling","PMID:16460914","Reactome:R-HSA-1963573"],"direct_ancestors":[{"relation_name":"is_a","term_name":"plasma membrane signaling receptor complex","termid":"GO:0098802"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005886"}],"interesting_parent_ids":["GO:0005886","GO:0032991","GO:0005575"],"is_obsolete":false,"name":"ERBB3:ERBB2 complex","synonyms":[{"name":"EGFR:ERBB2 heterodimer","type":"narrow"},{"name":"NRG1/2:ERBB3:ERBB2","type":"narrow"}],"termid":"GO:0038143"}


id: PBO:0088756
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"fibrillarin, rRNA and histone methyltransferase","termid":"PBO:0088756"}


id: PR:Q96WW3
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPBC32H8.05 gene.","definition_xrefs":["UniProtKB:Q96WW3","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"UPF0642 protein C32H8.05 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC32H8.05","synonyms":[{"name":"Spom972h-SPBC32H8.05","type":"exact"}],"termid":"PR:Q96WW3"}


id: PR:G2TRK6
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPAC9G1.14 gene.","definition_xrefs":["PRO:DNx","UniProtKB:G2TRK6"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized protein C9G1.14 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC9G1.14","synonyms":[{"name":"Spom972h-SPAC9G1.14","type":"exact"}],"termid":"PR:G2TRK6"}


id: PBO:0039965
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ADP ribosylation factor like GTPase 2 binding protein pseudogene 8","termid":"PBO:0039965"}


id: PBO:0034606
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_RNA_level_during_cellular_response_to_iron_ion_starvation","termid":"PBO:0034606"}


id: GO:1903032
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of microtubule plus-end binding.","definition_xrefs":["PMID:16148041","GOC:TermGenie","GOC:hjd","GO_REF:0000059"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of microtubule plus-end binding","termid":"GO:1903031"},{"relation_name":"is_a","term_name":"negative regulation of microtubule binding","termid":"GO:1904527"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of microtubule plus-end binding","synonyms":[{"name":"down regulation of microtubule plus-end binding","type":"exact"},{"name":"down-regulation of microtubule plus-end binding","type":"exact"},{"name":"downregulation of microtubule plus-end binding","type":"exact"},{"name":"inhibition of microtubule plus-end binding","type":"narrow"}],"termid":"GO:1903032"}


id: PBO:0056207
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MAGE family member B2","termid":"PBO:0056207"}


id: PBO:0053139
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"lactate dehydrogenase A like 6A","termid":"PBO:0053139"}


id: PBO:0039998
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ADP ribosylation factor like GTPase 10","termid":"PBO:0039998"}


id: PBO:0042035
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CCDC88C divergent transcript","termid":"PBO:0042035"}


id: PBO:0028671
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_number_of_Sad1_foci_during_response_to_DNA_damage","termid":"PBO:0028671"}


id: GO:0045071
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of viral genome replication.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of viral genome replication","termid":"GO:0045069"},{"relation_name":"is_a","term_name":"negative regulation of viral process","termid":"GO:0048525"},{"relation_name":"negatively_regulates","term_name":"viral genome replication","termid":"GO:0019079"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of viral genome replication","synonyms":[{"name":"down regulation of viral genome replication","type":"exact"},{"name":"down-regulation of viral genome replication","type":"exact"},{"name":"downregulation of viral genome replication","type":"exact"},{"name":"inhibition of viral genome replication","type":"narrow"}],"termid":"GO:0045071"}


id: PBO:0075155
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nuclear ribonucleoprotein polypeptide C pseudogene 11","termid":"PBO:0075155"}


id: PBO:0086861
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Putative SCF ubiquitin ligase F-box protein; interacts physically with both Cdc53p and Skp1 and genetically with CDC34; similar to putative F-box protein YDR131C","termid":"PBO:0086861"}


id: GO:0071405
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a methanol stimulus.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to methanol","termid":"GO:0033986"},{"relation_name":"is_a","term_name":"cellular response to alcohol","termid":"GO:0097306"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cellular response to methanol","termid":"GO:0071405"}


id: RO:0003308
data:
  {"annotation_feature_type":"gene","cv_name":"relationship","definition":"A relationship between an entity and a condition (phenotype or disease) with which it exhibits a statistical dependence relationship.","direct_ancestors":[{"relation_name":"is_a","term_name":"correlated_with","termid":"RO:0002610"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"correlated_with_condition","termid":"RO:0003308"}


id: PBO:0040540
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"beta-1,3-galactosyltransferase 6","termid":"PBO:0040540"}


id: PR:P31209
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- pabp gene.","definition_xrefs":["PRO:DNx","UniProtKB:P31209"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"polyadenylate-binding protein, cytoplasmic and nuclear (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC57A7.04c","synonyms":[{"name":"Spom972h-pabp","type":"exact"},{"name":"PABP (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"poly(A)-binding protein (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"polyadenylate tail-binding protein (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:P31209"}


id: PBO:0053946
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1249","termid":"PBO:0053946"}


id: GO:0016353
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. (Was not defined before being made obsolete).","definition_xrefs":["GOC:go_curators"],"gene_count":0,"genotype_count":0,"name":"obsolete carbamate susceptibility/resistance (obsolete GO:0016353)","synonyms":[{"name":"carbamate susceptibility/resistance","type":"exact"}],"termid":"GO:0016353"}


id: GO:0034809
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: benzo(a)pyrene-cis-4,5-dihydrodiol = 4,5-dihydroxybenzo(a)pyrene + H2.","definition_xrefs":["UM-BBD_reactionID:r1127"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor","termid":"GO:0016628"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016491","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"benzo(a)pyrene-cis-4,5-dihydrodiol dehydrogenase activity","termid":"GO:0034809"}


id: PBO:0067967
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 5S ribosomal pseudogene 269","termid":"PBO:0067967"}


id: PBO:0040113
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ArfGAP with SH3 domain, ankyrin repeat and PH domain 3","termid":"PBO:0040113"}


id: GO:1990772
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The regulated release of substance P, a peptide hormone that is involved in neurotransmission, inflammation, and antimicrobial activity.","definition_xrefs":["PMID:11278900"],"direct_ancestors":[{"relation_name":"is_a","term_name":"peptide hormone secretion","termid":"GO:0030072"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0006810","GO:0008150","GO:0023052","GO:0051179"],"is_obsolete":false,"name":"substance P secretion","termid":"GO:1990772"}


id: GO:0098571
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The side (leaflet) of the plastid thylakoid membrane that faces the lumen, and any proteins embedded in it or loosely bound to its surface.","definition_xrefs":["GOC:dos"],"direct_ancestors":[{"relation_name":"is_a","term_name":"side of membrane","termid":"GO:0098552"},{"relation_name":"part_of","term_name":"plastid thylakoid membrane","termid":"GO:0055035"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005737"}],"interesting_parent_ids":["GO:0005575","GO:0005737"],"is_obsolete":false,"name":"lumenal side of plastid thylakoid membrane","termid":"GO:0098571"}


id: PBO:0089452
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dihydrolipoamide S-acetyltransferase E2, Lat1","termid":"PBO:0089452"}


id: GO:0051206
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving silicates, the salts of silicic acids. Silicates are usually composed of silicon and oxygen (Si[x]O[y]), one or more metals, and possibly hydrogen. Types of silicate include unisilicates, metasilicates and hydrous silicates.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxoacid metabolic process","termid":"GO:0043436"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0008150","GO:0044281"],"is_obsolete":false,"name":"silicate metabolic process","synonyms":[{"name":"silicate metabolism","type":"exact"}],"termid":"GO:0051206"}


id: GO:0120316
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The assembly and organization of the sperm flagellum, the microtubule-based axoneme and associated structures that are part of a sperm flagellum (or cilium).","definition_xrefs":["PMID:32791035","GOC:krc"],"direct_ancestors":[{"relation_name":"is_a","term_name":"developmental process involved in reproduction","termid":"GO:0003006"},{"relation_name":"is_a","term_name":"cellular process involved in reproduction in multicellular organism","termid":"GO:0022412"},{"relation_name":"is_a","term_name":"motile cilium assembly","termid":"GO:0044458"},{"relation_name":"part_of","term_name":"spermatid development","termid":"GO:0007286"},{"relation_name":"part_of","term_name":"flagellated sperm motility","termid":"GO:0030317"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0044085"}],"interesting_parent_ids":["GO:0044085","GO:0008150"],"is_obsolete":false,"name":"sperm flagellum assembly","termid":"GO:0120316"}


id: PBO:0108763
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"4-phosphoerythronate phosphatase/2-phosphoglycolate phophatase, involved in detoxification of glycolytic by-products","termid":"PBO:0108763"}


id: PBO:0061554
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"5',3'-nucleotidase, cytosolic pseudogene 1","termid":"PBO:0061554"}


id: GO:0018936
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving nitrilotriacetate, the aminotricarboxylic acid N(CH2COO-)3, that occur in the absence of oxygen.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nitrilotriacetate metabolic process","termid":"GO:0018934"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0044281","GO:0008150"],"is_obsolete":false,"name":"anaerobic nitrilotriacetate metabolic process","synonyms":[{"name":"anaerobic nitrilotriacetate metabolism","type":"exact"}],"termid":"GO:0018936"}


id: GO:0009820
data:
  {"annotated_genes":["SJAG_01425"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[96079],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006769"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways involving alkaloids, nitrogen containing natural products which are not otherwise classified as peptides, nonprotein amino acids, amines, cyanogenic glycosides, glucosinolates, cofactors, phytohormones or primary metabolites (such as purine or pyrimidine bases).","definition_xrefs":["GOC:lr","ISBN:0122146743"],"direct_ancestors":[{"relation_name":"is_a","term_name":"organonitrogen compound metabolic process","termid":"GO:1901564"}],"gene_count":1,"genes_by_uniquename":{"SJAG_01425":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"alkaloid metabolic process","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"alkaloid metabolism","type":"exact"}],"termid":"GO:0009820","terms_by_termid":{"GO:0006769":null}}


id: PBO:0078679
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-Lys (anticodon TTT) 12-1","termid":"PBO:0078679"}


id: PBO:0068770
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 7","termid":"PBO:0068770"}


id: PBO:0082918
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Cytochrome c1 heme lyase; involved in maturation of cytochrome c1, which is a subunit of the mitochondrial ubiquinol-cytochrome-c reductase; links heme covalently to apocytochrome c1; human homolog HCCS can complement yeast cyt2 null mutant","termid":"PBO:0082918"}


id: GO:0009035
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the endonucleolytic cleavage of DNA to give random double-stranded fragments with terminal 5' or 3' protrusions, driven by ATP hydrolysis. Cleavage is dependent on the presence in the DNA of a specific recognition site. Cleavage may occur hundreds or thousands of base pairs away from the recognition site due to translocation of DNA.","definition_xrefs":["PMID:15300241","PMID:15788748"],"direct_ancestors":[{"relation_name":"is_a","term_name":"DNA translocase activity","termid":"GO:0015616"},{"relation_name":"is_a","term_name":"restriction endodeoxyribonuclease activity","termid":"GO:0015666"},{"relation_name":"is_a","term_name":"endodeoxyribonuclease activity, producing 5'-phosphomonoesters","termid":"GO:0016888"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016788"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0140097"},{"rel_name":"is_a","termid":"GO:0016787"}],"interesting_parent_ids":["GO:0016787","GO:0140097","GO:0003824","GO:0016788","GO:0003674"],"is_obsolete":false,"name":"type I site-specific deoxyribonuclease activity","secondary_identifiers":["EC:3.1.21.3","MetaCyc:3.1.21.3-RXN"],"synonyms":[{"name":"ATP-dependent DNase activity","type":"related"},{"name":"adenosine triphosphate-dependent deoxyribonuclease activity","type":"related"},{"name":"deoxyribonuclease (ATP- and S-adenosyl-L-methionine-dependent)","type":"related"},{"name":"deoxyribonuclease (adenosine triphosphate-hydrolyzing)","type":"related"},{"name":"type I restriction enzyme activity","type":"exact"}],"termid":"GO:0009035"}


id: PBO:0085144
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Nucleolar S-adenosylmethionine-dependent rRNA methyltransferase; methylates adenine (m1A) of large subunit (LSU) rRNA at position 2142; belongs to Rossmann fold superfamily; null mutant exhibits abnormal lipid metabolic phenotype; not an essential gene","termid":"PBO:0085144"}


id: GO:0090152
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The directed movement of a protein to a specific location in the mitochondrial membrane that contributes to mitochondrial fission.","definition_xrefs":["GOC:dph","GOC:tb","GOC:ascb_2009"],"direct_ancestors":[{"relation_name":"is_a","term_name":"establishment of protein localization to mitochondrial membrane","termid":"GO:0090151"},{"relation_name":"part_of","term_name":"mitochondrial fission","termid":"GO:0000266"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0061024"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0007005"},{"rel_name":"part_of","termid":"GO:0007005"}],"interesting_parent_ids":["GO:0051179","GO:0008150","GO:0061024","GO:0007005"],"is_obsolete":false,"name":"establishment of protein localization to mitochondrial membrane involved in mitochondrial fission","synonyms":[{"name":"establishment of protein localisation in mitochondrial membrane involved in mitochondrial fission","type":"exact"},{"name":"establishment of protein localization in mitochondrial membrane involved in mitochondrial fission","type":"exact"}],"termid":"GO:0090152"}


id: PBO:0027679
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_mitochondrial_translation","termid":"PBO:0027679"}


id: PBO:0085257
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Peripheral membrane protein required for COPI vesicle fusion to the ER; mediates Sey1p-independent homotypic ER fusion; prohibits back-fusion of COPII vesicles with the ER; forms a tethering complex with Sec39p and Dsl1p that interacts with ER SNAREs Sec20p and Use1p","termid":"PBO:0085257"}


id: PBO:0085890
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein of unknown function; involved in recovery from cell cycle arrest in response to pheromone, in a Far1p-independent pathway; interacts with Far7p, Far8p, Far9p, Far10p, and Far11p; localizes to the endoplasmic reticulum; protein abundance increases in response to DNA replication stress","termid":"PBO:0085890"}


id: PBO:0055597
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 3033","termid":"PBO:0055597"}


id: PBO:0029024
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_chromatin_silencing_at_silent_mating-type_cassette","termid":"PBO:0029024"}


id: PBO:0091219
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sub-telomeric 5Tm protein family Ftm2","termid":"PBO:0091219"}


id: GO:0140068
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: crotonyl-CoA + histone = CoA + crotonyl-histone.","definition_xrefs":["PMID:25818647"],"direct_ancestors":[{"relation_name":"is_a","term_name":"peptide crotonyltransferase activity","termid":"GO:0140064"},{"relation_name":"is_a","term_name":"histone modifying activity","termid":"GO:0140993"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0140096"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016746"},{"rel_name":"is_a","termid":"GO:0016740"}],"interesting_parent_ids":["GO:0016740","GO:0003674","GO:0140096","GO:0003824","GO:0016746"],"is_obsolete":false,"name":"histone crotonyltransferase activity","termid":"GO:0140068"}


id: PBO:0034568
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_vegetative_cell_polarity","termid":"PBO:0034568"}


id: PR:Q9USM9
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A coenzyme Q-binding protein COQ10 homolog A, mitochondrial that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PANTHER:PTHR12901:SF0","PRO:DNx","OMA:SCHPO04486"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"coenzyme Q-binding protein coq10, mitochondrial (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC16A11.07","secondary_identifiers":["UniProtKB:Q9USM9"],"synonyms":[{"name":"Spom972h-COQ10A","type":"exact"}],"termid":"PR:Q9USM9"}


id: GO:0042351
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of GDP-L-fucose from GDP-D-mannose via GDP-4-dehydro-6-deoxy-D-mannose, requiring the functions of GDP-mannose 4,6-dehydratase (EC:4.2.1.47) and GDP-L-fucose synthase (EC:1.1.1.271).","definition_xrefs":["PMID:11030750"],"direct_ancestors":[{"relation_name":"is_a","term_name":"GDP-L-fucose biosynthetic process","termid":"GO:0042350"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0055086"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0055086","GO:0008150","GO:0044281"],"is_obsolete":false,"name":"'de novo' GDP-L-fucose biosynthetic process","secondary_identifiers":["MetaCyc:PWY-66"],"synonyms":[{"name":"'de novo' GDP-L-fucose anabolism","type":"exact"},{"name":"'de novo' GDP-L-fucose biosynthesis","type":"exact"},{"name":"'de novo' GDP-L-fucose formation","type":"exact"},{"name":"'de novo' GDP-L-fucose synthesis","type":"exact"},{"name":"GDP-L-fucose biosynthesis, de novo pathway","type":"exact"},{"name":"GDP-L-fucose biosynthetic process, de novo pathway","type":"exact"}],"termid":"GO:0042351"}


id: GO:1901514
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + lipo-chitin oligosaccharide(in) = ADP + phosphate + lipo-chitin oligosaccharide(out).","definition_xrefs":["GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ATPase-coupled transmembrane transporter activity","termid":"GO:0042626"},{"relation_name":"is_a","term_name":"lipo-chitin oligosaccharide transmembrane transporter activity","termid":"GO:1901513"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0005215","GO:0022857","GO:0003674"],"is_obsolete":false,"name":"ATPase-coupled lipo-chitin oligosaccharide transmembrane transporter activity","synonyms":[{"name":"lipo-chitin oligosaccharide transmembrane-transporting ATPase activity","type":"related"}],"termid":"GO:1901514"}


id: PBO:0027395
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_diacylglycerol_O-acyltransferase_activity","termid":"PBO:0027395"}


id: PBO:0066516
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ral guanine nucleotide dissociation stimulator like 1","termid":"PBO:0066516"}


id: GO:2000128
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of octopamine signaling pathway.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of octopamine or tyramine signaling pathway","termid":"GO:2000125"},{"relation_name":"regulates","term_name":"octopamine signaling pathway","termid":"GO:0071927"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"regulation of octopamine signaling pathway","synonyms":[{"name":"regulation of octopamine signalling pathway","type":"exact"}],"termid":"GO:2000128"}


id: GO:0055025
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates, maintains or increases the frequency, rate or extent of cardiac muscle tissue development.","definition_xrefs":["GOC:vk"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of striated muscle tissue development","termid":"GO:0045844"},{"relation_name":"is_a","term_name":"regulation of cardiac muscle tissue development","termid":"GO:0055024"},{"relation_name":"positively_regulates","term_name":"cardiac muscle tissue development","termid":"GO:0048738"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of cardiac muscle tissue development","synonyms":[{"name":"activation of cardiac muscle development","type":"narrow"},{"name":"positive regulation of heart muscle development","type":"exact"},{"name":"stimulation of cardiac muscle development","type":"narrow"},{"name":"up regulation of cardiac muscle development","type":"exact"},{"name":"up-regulation of cardiac muscle development","type":"exact"},{"name":"upregulation of cardiac muscle development","type":"exact"}],"termid":"GO:0055025"}


id: GO:0019815
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"An immunoglobulin complex that is present in the plasma membrane of B cells and that in its canonical form is composed of two identical immunoglobulin heavy chains and two identical immunoglobulin light chains and a signaling subunit, a heterodimer of the Ig-alpha and Ig-beta proteins.","definition_xrefs":["ISBN:0781735149","GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"immunoglobulin complex","termid":"GO:0019814"},{"relation_name":"is_a","term_name":"plasma membrane signaling receptor complex","termid":"GO:0098802"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005886"}],"interesting_parent_ids":["GO:0032991","GO:0005886","GO:0005575"],"is_obsolete":false,"name":"B cell receptor complex","secondary_identifiers":["GO:0042570"],"synonyms":[{"name":"B cell receptor accessory molecule complex","type":"related"},{"name":"B lymphocyte receptor complex","type":"exact"},{"name":"B-cell receptor complex","type":"exact"},{"name":"B-lymphocyte receptor complex","type":"exact"},{"name":"BCR complex","type":"exact"},{"name":"antibody","type":"related"},{"name":"immunoglobulin complex, membrane bound","type":"exact"}],"termid":"GO:0019815"}


id: GO:0061313
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The series of molecular signals generated as a consequence of a fibroblast growth factor receptor binding to one of its physiological ligands and contributing to the progression of the heart over time.","definition_xrefs":["GOC:mtg_heart"],"direct_ancestors":[{"relation_name":"is_a","term_name":"fibroblast growth factor receptor signaling pathway","termid":"GO:0008543"},{"relation_name":"is_a","term_name":"cell surface receptor signaling pathway involved in heart development","termid":"GO:0061311"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"fibroblast growth factor receptor signaling pathway involved in heart development","synonyms":[{"name":"fibroblast growth factor receptor signalling pathway involved in heart development","type":"exact"}],"termid":"GO:0061313"}


id: GO:0097571
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"One of the two nuclei found in Giardia species (trophozoite stage). It is located on the left side of the cell when viewed from the dorsal side.","definition_xrefs":["ISBN:0-444-81258-X","GOC:giardia"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nucleus","termid":"GO:0005634"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0005634"}],"interesting_parent_ids":["GO:0005575","GO:0005634"],"is_obsolete":false,"name":"left nucleus","termid":"GO:0097571"}


id: CHEBI:18291
data:
  {"annotation_feature_type":"gene","cv_name":"chebi_ontology","direct_ancestors":[{"relation_name":"is_a","term_name":"chemical entity","termid":"CHEBI:24431"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"manganese atom","termid":"CHEBI:18291"}


id: PBO:0054092
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1445","termid":"PBO:0054092"}


id: GO:0033529
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of raffinose, the trisaccharide beta-D-fructofuranosyl alpha-D-galactopyranosyl-(1->6)-alpha-D-glucopyranoside.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"raffinose family oligosaccharide biosynthetic process","termid":"GO:0010325"},{"relation_name":"is_a","term_name":"raffinose metabolic process","termid":"GO:0033530"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005975"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0005975"],"is_obsolete":false,"name":"raffinose biosynthetic process","synonyms":[{"name":"raffinose anabolism","type":"exact"},{"name":"raffinose biosynthesis","type":"exact"},{"name":"raffinose formation","type":"exact"},{"name":"raffinose synthesis","type":"exact"}],"termid":"GO:0033529"}


id: GO:0061952
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process by which the midbody, the cytoplasmic bridge that connects the two prospective daughter cells, is severed at the end of mitotic cytokinesis, resulting in two separate daughter cells.","definition_xrefs":["PMID:12737809","PMID:29903934"],"direct_ancestors":[{"relation_name":"is_a","term_name":"membrane organization","termid":"GO:0061024"},{"relation_name":"is_a","term_name":"mitotic cytokinetic process","termid":"GO:1902410"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0000281"},{"rel_name":"is_a","termid":"GO:0061024"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0007049"}],"interesting_parent_ids":["GO:0007049","GO:0000281","GO:0008150","GO:0061024"],"is_obsolete":false,"name":"midbody abscission","synonyms":[{"name":"cell separation during cytokinesis","type":"exact"},{"name":"cytokinetic abscission","type":"exact"}],"termid":"GO:0061952"}


id: PBO:0050977
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"intraflagellar transport 20","termid":"PBO:0050977"}


id: GO:0014071
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cycloalkane stimulus. A cycloalkane is a cyclic saturated hydrocarbon having the general formula CnH2n.","definition_xrefs":["GOC:ef"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to organic cyclic compound","termid":"GO:0014070"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"response to cycloalkane","termid":"GO:0014071"}


id: PBO:0084107
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Haze-protective mannoprotein; reduces particle size of aggregated proteins in white wines, thereby decreasing turbidity; intragenic repeat expansion controls chronological aging; expansion of intragenic tandem repeats within N-terminus sufficient to cause pronounced life span shortening; repeat expansion shifts cells from sedentary to buoyant, thereby increasing exposure to oxygen, altering methionine, lipid, and purine metabolism","termid":"PBO:0084107"}


id: PBO:0066447
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"required for excision 1-B domain containing","termid":"PBO:0066447"}


id: GO:0005727
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"Circular DNA structures that are not part of a chromosome.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"intracellular anatomical structure","termid":"GO:0005622"},{"relation_name":"part_of","term_name":"extrachromosomal DNA","termid":"GO:0046821"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"extrachromosomal circular DNA","termid":"GO:0005727"}


id: GO:0014862
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of skeletal muscle contraction by regulating force and velocity of shortening. The force of skeletal muscle contraction is produced by acto-myosin interaction processes through formation of cross bridges. The shortening leads to reduction of length of muscle fiber and sarcomeres.","definition_xrefs":["GOC:mtg_muscle"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of skeletal muscle contraction","termid":"GO:0014819"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of skeletal muscle contraction by chemo-mechanical energy conversion","termid":"GO:0014862"}


id: PBO:0045991
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"EI24 pseudogene 5","termid":"PBO:0045991"}


id: GO:0000494
data:
  {"annotated_genes":["SJAG_00943","SJAG_02350"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[73072,105482],"is_not":false,"summary":null,"term":"GO:0000494"}]},"cv_name":"biological_process","definition":"Any process involved in forming the mature 3' end of a box C/D RNA molecule.","definition_xrefs":["GOC:krc"],"direct_ancestors":[{"relation_name":"is_a","term_name":"sno(s)RNA 3'-end processing","termid":"GO:0031126"},{"relation_name":"is_a","term_name":"box C/D RNA processing","termid":"GO:0034963"}],"gene_count":2,"genes_by_uniquename":{"SJAG_00943":null,"SJAG_02350":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016074"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0010467","GO:0008150","GO:0016074"],"is_obsolete":false,"name":"box C/D RNA 3'-end processing","references_by_uniquename":{"GO_REF:0000107":null,"PMID:21873635":null},"synonyms":[{"name":"box C/D RNA 3' end processing","type":"exact"},{"name":"box C/D sRNA 3'-end processing","type":"narrow"},{"name":"box C/D snoRNA 3'-end processing","type":"narrow"}],"termid":"GO:0000494","terms_by_termid":{"GO:0000494":null}}


id: PR:Q9P774
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO03160","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pre-mRNA-splicing factor ATP-dependent RNA helicase prp16 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC1711.17","secondary_identifiers":["UniProtKB:Q9P774"],"synonyms":[{"name":"Spom972h-DHX38","type":"exact"}],"termid":"PR:Q9P774"}


id: PBO:0072097
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein S12 pseudogene 28","termid":"PBO:0072097"}


id: PBO:0079742
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"UBX domain protein 8","termid":"PBO:0079742"}


id: PBO:0071015
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L21 pseudogene 17","termid":"PBO:0071015"}


id: PR:O13798
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- cid16 gene.","definition_xrefs":["PRO:DNx","UniProtKB:O13798"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"caffeine-induced protein 16 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC17H9.01","synonyms":[{"name":"Spom972h-cid16","type":"exact"}],"termid":"PR:O13798"}


id: PBO:0028439
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-sensitive_to_papuamide_B_during_mating","termid":"PBO:0028439"}


id: FYPO:0003676
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which maturation of a precursor 5S ribosomal RNA (rRNA) molecule into a mature 5S rRNA molecule is abnormal.","definition_xrefs":["GO:0000481","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal RNA processing","termid":"FYPO:0001553"},{"relation_name":"is_a","term_name":"abnormal ribosome biogenesis","termid":"FYPO:0005017"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0006551"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000294"}],"interesting_parent_ids":["FYPO:0006551","FYPO:0000002","FYPO:0000294","FYPO:0005447","FYPO:0001320","FYPO:0001985"],"is_obsolete":false,"name":"abnormal 5S RNA maturation","synonyms":[{"name":"abnormal 5S RNA maturation during mitotic cell cycle","type":"related"},{"name":"abnormal 5S RNA maturation during vegetative growth","type":"exact"},{"name":"abnormal 5S RNA processing","type":"exact"},{"name":"abnormal maturation of 5S rRNA","type":"exact"}],"termid":"FYPO:0003676"}


id: PBO:0012520
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-has_output_o_product_of","termid":"PBO:0012520"}


id: GO:0097055
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of agmatine ((4-aminobutyl)guanidine, NH2-CH2-CH2-CH2-CH2-NH-C(-NH2)(=NH)). Agmatine is the decarboxylation product of the amino acid arginine and is an intermediate in polyamine biosynthesis. It is synthesized in the brain, stored in synaptic vesicles, accumulated by uptake, released by membrane depolarization, and inactivated by agmatinase.","definition_xrefs":["GOC:yaf","GOC:pr"],"direct_ancestors":[{"relation_name":"is_a","term_name":"primary amino compound biosynthetic process","termid":"GO:1901162"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"agmatine biosynthetic process","synonyms":[{"name":"agmatine anabolism","type":"exact"},{"name":"agmatine biosynthesis","type":"exact"},{"name":"agmatine formation","type":"exact"},{"name":"agmatine synthesis","type":"exact"}],"termid":"GO:0097055"}


id: PBO:0058646
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 6775","termid":"PBO:0058646"}


id: PR:O42709
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- cdc23 gene.","definition_xrefs":["UniProtKB:O42709","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DNA replication licensing factor mcm10 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC1347.10","synonyms":[{"name":"Spom972h-cdc23","type":"exact"},{"name":"cdc23 protein (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"minichromosome maintenance protein 10 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:O42709"}


id: PBO:0042849
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cilia and flagella associated protein 58","termid":"PBO:0042849"}


id: PBO:0057977
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 3692","termid":"PBO:0057977"}


id: PBO:0002225
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosome biogenesis CGR1 family (predicted)","termid":"PBO:0002225"}


id: GO:1990222
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The ProVWX complex belongs to the family of ATP-binding cassette (ABC) transporter proteins complexes. It consists of a cytoplasmic ATPase subunit ProV, a transmembrane subunit ProW and a periplasmic binding protein ProX. It is capable of translocating a wide variety of solute (e.g. glycine betaine) across the plasma membrane and is activated under osmotic stress conditions.","definition_xrefs":["PMID:23249124","GOC:bhm"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ATP-binding cassette (ABC) transporter complex","termid":"GO:0043190"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0005886"}],"interesting_parent_ids":["GO:0032991","GO:0005886","GO:0005575"],"is_obsolete":false,"name":"ProVWX complex","synonyms":[{"name":"ATP-binding cassette (ABC) transporter complex ProVWX","type":"exact"}],"termid":"GO:1990222"}


id: GO:0030178
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of the Wnt signaling pathway.","definition_xrefs":["GOC:dph","GOC:tb","GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of signal transduction","termid":"GO:0009968"},{"relation_name":"is_a","term_name":"regulation of Wnt signaling pathway","termid":"GO:0030111"},{"relation_name":"negatively_regulates","term_name":"Wnt signaling pathway","termid":"GO:0016055"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"negatively_regulates","termid":"GO:0023052"},{"rel_name":"regulates","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"negative regulation of Wnt signaling pathway","secondary_identifiers":["GO:0045810"],"synonyms":[{"name":"down regulation of Wnt receptor signaling pathway","type":"exact"},{"name":"down regulation of frizzled signaling pathway","type":"exact"},{"name":"down-regulation of Wnt receptor signaling pathway","type":"exact"},{"name":"down-regulation of frizzled signaling pathway","type":"exact"},{"name":"downregulation of Wnt receptor signaling pathway","type":"exact"},{"name":"downregulation of frizzled signaling pathway","type":"exact"},{"name":"inhibition of Wnt receptor signaling pathway","type":"narrow"},{"name":"inhibition of frizzled signaling pathway","type":"narrow"},{"name":"negative regulation of Wnt receptor signaling pathway","type":"exact"},{"name":"negative regulation of Wnt receptor signalling pathway","type":"exact"},{"name":"negative regulation of Wnt-activated signaling pathway","type":"exact"},{"name":"negative regulation of frizzled signaling pathway","type":"exact"},{"name":"negative regulation of frizzled signalling pathway","type":"exact"}],"termid":"GO:0030178"}


id: GO:0010126
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving mycothiol, which consists of N-acetyl-L-cysteine linked to a pseudodisaccharide, D-glucosamine and myo-inositol. Mycothiol is produced in actinomycetes like mycobacteria and serves similar functions to glutathione.","definition_xrefs":["GOC:pz"],"direct_ancestors":[{"relation_name":"is_a","term_name":"sulfur compound metabolic process","termid":"GO:0006790"},{"relation_name":"is_a","term_name":"glycoside metabolic process","termid":"GO:0016137"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006790"}],"interesting_parent_ids":["GO:0006790","GO:0008150"],"is_obsolete":false,"name":"mycothiol metabolic process","synonyms":[{"name":"mycothiol metabolism","type":"exact"}],"termid":"GO:0010126"}


id: PBO:0004190
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA polymerase I upstream activation factor complex subunit Rrn7","termid":"PBO:0004190"}


id: PBO:0081685
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ZNF606 antisense RNA 1","termid":"PBO:0081685"}


id: GO:0106346
data:
  {"annotated_genes":["SJAG_01958"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[90758],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0120048"}]},"cv_name":"molecular_function","definition":"Catalysis of the transfer of a methyl group from a donor to a nucleoside residue in an snRNA molecule.","definition_xrefs":["PMID:27573892"],"direct_ancestors":[{"relation_name":"is_a","term_name":"RNA methyltransferase activity","termid":"GO:0008173"}],"gene_count":1,"genes_by_uniquename":{"SJAG_01958":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016741"},{"rel_name":"is_a","termid":"GO:0140098"}],"interesting_parent_ids":["GO:0140098","GO:0016740","GO:0003674","GO:0016741","GO:0003824"],"is_obsolete":false,"name":"snRNA methyltransferase activity","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0106346","terms_by_termid":{"GO:0120048":null}}


id: GO:0032207
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of a recombinational process involved in the maintenance of proper telomeric length.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of mitotic recombination","termid":"GO:0000019"},{"relation_name":"is_a","term_name":"regulation of telomere maintenance","termid":"GO:0032204"},{"relation_name":"is_a","term_name":"regulation of DNA recombination at telomere","termid":"GO:0072695"},{"relation_name":"regulates","term_name":"telomere maintenance via recombination","termid":"GO:0000722"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0006310"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0032200"},{"rel_name":"regulates","termid":"GO:0006259"}],"interesting_parent_ids":["GO:0032200","GO:0006310","GO:0008150","GO:0006259"],"is_obsolete":false,"name":"regulation of telomere maintenance via recombination","termid":"GO:0032207"}


id: SO:0001926
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A non-coding RNA transcript, derived from the transcription of the telomere. These transcripts are antisense of ARRET transcripts.","definition_xrefs":["PMID:22139915"],"direct_ancestors":[{"relation_name":"is_a","term_name":"telomeric_transcript","termid":"SO:0001927"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"anti_ARRET","synonyms":[{"name":"anti-ARRET","type":"exact"}],"termid":"SO:0001926"}


id: GO:0099637
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The directed movement of neurotransmitter receptors.","definition_xrefs":["GOC:dos"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein transport","termid":"GO:0015031"},{"relation_name":"is_a","term_name":"protein-containing complex localization","termid":"GO:0031503"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006810","GO:0008150","GO:0051179"],"is_obsolete":false,"name":"neurotransmitter receptor transport","termid":"GO:0099637"}


id: GO:1902725
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of satellite cell differentiation.","definition_xrefs":["GO_REF:0000058","GOC:TermGenie","PMID:23212449"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of skeletal muscle cell differentiation","termid":"GO:2001015"},{"relation_name":"negatively_regulates","term_name":"skeletal muscle satellite cell differentiation","termid":"GO:0014816"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of satellite cell differentiation","synonyms":[{"name":"down regulation of satellite cell differentiation","type":"exact"},{"name":"down-regulation of satellite cell differentiation","type":"exact"},{"name":"downregulation of satellite cell differentiation","type":"exact"},{"name":"inhibition of satellite cell differentiation","type":"narrow"}],"termid":"GO:1902725"}


id: PR:O36024
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- fta1 gene.","definition_xrefs":["UniProtKB:O36024","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"kinetochore protein fta1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC4F10.12","synonyms":[{"name":"Spom972h-fta1","type":"exact"},{"name":"sim4 complex subunit fta1 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"sim4-mal2-associated protein 1 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:O36024"}


id: PATO:0001629
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A spatial pattern inhering in a bearer by virtue of the bearer's being gathered or tending to gather into a mass or whole.","definition_xrefs":["WordNet:WordNet"],"direct_ancestors":[{"relation_name":"is_a","term_name":"irregular spatial pattern","termid":"PATO:0000330"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"aggregated","synonyms":[{"name":"clumped","type":"exact"},{"name":"clustered","type":"exact"}],"termid":"PATO:0001629"}


id: PR:Q10311
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A 26S proteasome non-ATPase regulatory subunit 10 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO00969","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ankyrin repeat-containing protein C6C3.08 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC6C3.08","secondary_identifiers":["UniProtKB:Q10311"],"synonyms":[{"name":"Spom972h-PSMD10","type":"exact"}],"termid":"PR:Q10311"}


id: GO:0140785
data:
  {"annotated_genes":["SJAG_03405"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[108078],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0140786"}]},"cv_name":"molecular_function","definition":"Binding to and responding, e.g. by conformational change, to changes in the cellular level of an amino acid.","definition_xrefs":["GOC:pg"],"direct_ancestors":[{"relation_name":"is_a","term_name":"small molecule sensor activity","termid":"GO:0140299"}],"gene_count":1,"genes_by_uniquename":{"SJAG_03405":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0140299"}],"interesting_parent_ids":["GO:0140299","GO:0003674"],"is_obsolete":false,"name":"amino acid sensor activity","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"amino acid sensing activity","type":"exact"}],"termid":"GO:0140785","terms_by_termid":{"GO:0140786":null}}


id: MOD:00739
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively substitutes a cluster of iron and sulfur atoms for hydrogen atoms.","definition_xrefs":["PubMed:18688235"],"direct_ancestors":[{"relation_name":"is_a","term_name":"iron containing modified residue","termid":"MOD:00738"},{"relation_name":"is_a","term_name":"sulfur containing modified residue","termid":"MOD:00860"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"iron-sulfur cluster containing modification","synonyms":[{"name":"FeSRes","type":"exact"}],"termid":"MOD:00739"}


id: PBO:0003132
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CDC50 domain protein, implicated in signal transduction (predicted)","termid":"PBO:0003132"}


id: GO:0005886
data:
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id: GO:0075070
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id: FYPO:0005999
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id: PBO:0043509
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id: FYPO:0000302
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id: PBO:0075808
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id: PBO:0040738
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id: GO:0019876
data:
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id: GO:0031547
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id: PBO:0041899
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  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"caveolae associated protein 4","termid":"PBO:0041899"}


id: GO:1902690
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of NAD metabolic process.","definition_xrefs":["GOC:TermGenie","GO_REF:0000058","PMID:19846558","GOC:di"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of purine nucleotide metabolic process","termid":"GO:1900544"},{"relation_name":"is_a","term_name":"regulation of NAD metabolic process","termid":"GO:1902688"},{"relation_name":"positively_regulates","term_name":"NAD metabolic process","termid":"GO:0019674"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"positively_regulates","termid":"GO:0044281"},{"rel_name":"regulates","termid":"GO:0044281"},{"rel_name":"regulates","termid":"GO:0055086"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"positively_regulates","termid":"GO:0055086"}],"interesting_parent_ids":["GO:0055086","GO:0044281","GO:0008150"],"is_obsolete":false,"name":"positive regulation of NAD metabolic process","synonyms":[{"name":"activation of NAD (oxidized) metabolic process","type":"narrow"},{"name":"activation of NAD (oxidized) metabolism","type":"narrow"},{"name":"activation of NAD metabolic process","type":"narrow"},{"name":"activation of NAD metabolism","type":"narrow"},{"name":"activation of NAD phosphorylation and dephosphorylation","type":"narrow"},{"name":"activation of nicotinamide adenine dinucleotide metabolic process","type":"narrow"},{"name":"activation of nicotinamide adenine dinucleotide metabolism","type":"narrow"},{"name":"activation of oxidized NAD metabolic process","type":"narrow"},{"name":"activation of oxidized NAD metabolism","type":"narrow"},{"name":"activation of oxidized nicotinamide adenine dinucleotide metabolic process","type":"narrow"},{"name":"activation of oxidized nicotinamide adenine dinucleotide metabolism","type":"narrow"},{"name":"positive regulation of NAD (oxidized) metabolic process","type":"exact"},{"name":"positive regulation of NAD (oxidized) metabolism","type":"exact"},{"name":"positive regulation of NAD metabolism","type":"exact"},{"name":"positive regulation of NAD phosphorylation and dephosphorylation","type":"narrow"},{"name":"positive regulation of nicotinamide adenine dinucleotide metabolic process","type":"exact"},{"name":"positive regulation of nicotinamide adenine dinucleotide metabolism","type":"exact"},{"name":"positive regulation of oxidized NAD metabolic process","type":"exact"},{"name":"positive regulation of oxidized NAD metabolism","type":"exact"},{"name":"positive regulation of oxidized nicotinamide adenine dinucleotide metabolic process","type":"exact"},{"name":"positive regulation of oxidized nicotinamide adenine dinucleotide metabolism","type":"exact"},{"name":"up regulation of NAD (oxidized) metabolic process","type":"exact"},{"name":"up regulation of NAD (oxidized) metabolism","type":"exact"},{"name":"up regulation of NAD metabolic process","type":"exact"},{"name":"up regulation of NAD metabolism","type":"exact"},{"name":"up regulation of NAD phosphorylation and dephosphorylation","type":"narrow"},{"name":"up regulation of nicotinamide adenine dinucleotide metabolic process","type":"exact"},{"name":"up regulation of nicotinamide adenine dinucleotide metabolism","type":"exact"},{"name":"up regulation of oxidized NAD metabolic process","type":"exact"},{"name":"up regulation of oxidized NAD metabolism","type":"exact"},{"name":"up regulation of oxidized nicotinamide adenine dinucleotide metabolic process","type":"exact"},{"name":"up regulation of oxidized nicotinamide adenine dinucleotide metabolism","type":"exact"},{"name":"up-regulation of NAD (oxidized) metabolic process","type":"exact"},{"name":"up-regulation of NAD (oxidized) metabolism","type":"exact"},{"name":"up-regulation of NAD metabolic process","type":"exact"},{"name":"up-regulation of NAD metabolism","type":"exact"},{"name":"up-regulation of NAD phosphorylation and dephosphorylation","type":"narrow"},{"name":"up-regulation of nicotinamide adenine dinucleotide metabolic process","type":"exact"},{"name":"up-regulation of nicotinamide adenine dinucleotide metabolism","type":"exact"},{"name":"up-regulation of oxidized NAD metabolic process","type":"exact"},{"name":"up-regulation of oxidized NAD metabolism","type":"exact"},{"name":"up-regulation of oxidized nicotinamide adenine dinucleotide metabolic process","type":"exact"},{"name":"up-regulation of oxidized nicotinamide adenine dinucleotide metabolism","type":"exact"},{"name":"upregulation of NAD (oxidized) metabolic process","type":"exact"},{"name":"upregulation of NAD (oxidized) metabolism","type":"exact"},{"name":"upregulation of NAD metabolic process","type":"exact"},{"name":"upregulation of NAD metabolism","type":"exact"},{"name":"upregulation of NAD phosphorylation and dephosphorylation","type":"narrow"},{"name":"upregulation of nicotinamide adenine dinucleotide metabolic process","type":"exact"},{"name":"upregulation of nicotinamide adenine dinucleotide metabolism","type":"exact"},{"name":"upregulation of oxidized NAD metabolic process","type":"exact"},{"name":"upregulation of oxidized NAD metabolism","type":"exact"},{"name":"upregulation of oxidized nicotinamide adenine dinucleotide metabolic process","type":"exact"},{"name":"upregulation of oxidized nicotinamide adenine dinucleotide metabolism","type":"exact"}],"termid":"GO:1902690"}


id: PBO:0028405
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-protein_mislocalized_to_medial_cortex_during_vegetative_growth","termid":"PBO:0028405"}


id: PBO:0046219
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"elongin C pseudogene 12","termid":"PBO:0046219"}


id: PBO:0086931
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Rab family GTPase; essential for vesicle-mediated exocytic secretion and autophagy; associates with the exocyst component Sec15p and may regulate polarized delivery of transport vesicles to the exocyst at the plasma membrane; exocyst association is negatively regulated via phosphorylation by Cdc5p during cytokinesis","termid":"PBO:0086931"}


id: PBO:0050740
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"heat shock protein family E (Hsp10) member 1 pseudogene 2","termid":"PBO:0050740"}


id: PATO:0002129
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A disposition inhering in a tumour by virtue of the bearer's disposition to invade surrounding tissues.","definition_xrefs":["PATOC:GVG"],"direct_ancestors":[{"relation_name":"is_a","term_name":"neoplastic","termid":"PATO:0002011"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"neoplastic, invasive","termid":"PATO:0002129"}


id: PBO:0057442
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 559","termid":"PBO:0057442"}


id: PBO:0057033
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 128-1","termid":"PBO:0057033"}


id: GO:0043069
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of programmed cell death, cell death resulting from activation of endogenous cellular processes.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of programmed cell death","termid":"GO:0043067"},{"relation_name":"is_a","term_name":"negative regulation of cellular process","termid":"GO:0048523"},{"relation_name":"negatively_regulates","term_name":"programmed cell death","termid":"GO:0012501"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of programmed cell death","secondary_identifiers":["GO:0043072"],"synonyms":[{"name":"down regulation of programmed cell death","type":"exact"},{"name":"down-regulation of programmed cell death","type":"exact"},{"name":"downregulation of programmed cell death","type":"exact"},{"name":"inhibition of programmed cell death","type":"narrow"},{"name":"negative regulation of non-apoptotic programmed cell death","type":"narrow"}],"termid":"GO:0043069"}


id: PBO:0004077
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Ran GDP/GTP exchange factor","termid":"PBO:0004077"}


id: GO:0001091
data:
  {"annotated_genes":["SJAG_00159"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[75449],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0001097"}]},"cv_name":"molecular_function","definition":"Binding to a basal RNA polymerase II transcription factor, any of the factors involved in formation of the preinitiation complex (PIC) by RNA polymerase II and defined as a basal or general transcription factor.","definition_xrefs":["GOC:txnOH","PMID:16858867"],"direct_ancestors":[{"relation_name":"is_a","term_name":"basal RNA polymerase II transcription machinery binding","termid":"GO:0001099"},{"relation_name":"is_a","term_name":"general transcription initiation factor binding","termid":"GO:0140296"}],"gene_count":1,"genes_by_uniquename":{"SJAG_00159":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0005515"}],"interesting_parent_ids":["GO:0005515","GO:0003674","GO:0005488"],"is_obsolete":false,"name":"RNA polymerase II general transcription initiation factor binding","references_by_uniquename":{"PMID:21873635":null},"synonyms":[{"name":"RNA polymerase II basal transcription factor binding","type":"exact"}],"termid":"GO:0001091","terms_by_termid":{"GO:0001097":null}}


id: GO:1903343
data:
  {"annotated_genes":["SJAG_00100","SJAG_03048"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[97812,103684],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1905263"}]},"cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of meiotic DNA double-strand break formation.","definition_xrefs":["GOC:TermGenie","GO_REF:0000058","PMID:25103240"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of DNA metabolic process","termid":"GO:0051054"},{"relation_name":"is_a","term_name":"positive regulation of cell cycle process","termid":"GO:0090068"},{"relation_name":"is_a","term_name":"regulation of meiotic DNA double-strand break formation","termid":"GO:1903341"},{"relation_name":"is_a","term_name":"positive regulation of reproductive process","termid":"GO:2000243"},{"relation_name":"positively_regulates","term_name":"meiotic DNA double-strand break formation","termid":"GO:0042138"}],"gene_count":2,"genes_by_uniquename":{"SJAG_00100":null,"SJAG_03048":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"positively_regulates","termid":"GO:0006259"},{"rel_name":"regulates","termid":"GO:0007049"},{"rel_name":"positively_regulates","termid":"GO:0007049"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0006259"}],"interesting_parent_ids":["GO:0008150","GO:0006259","GO:0007049"],"is_obsolete":false,"name":"positive regulation of meiotic DNA double-strand break formation","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"activation of meiotic DNA double-strand break formation","type":"narrow"},{"name":"up regulation of meiotic DNA double-strand break formation","type":"exact"},{"name":"up-regulation of meiotic DNA double-strand break formation","type":"exact"},{"name":"upregulation of meiotic DNA double-strand break formation","type":"exact"}],"termid":"GO:1903343","terms_by_termid":{"GO:1905263":null}}


id: MOD:00342
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-leucine residue to N-methyl-L-leucine.","definition_xrefs":["PubMed:11875433","RESID:AA0337"],"direct_ancestors":[{"relation_name":"is_a","term_name":"alpha-amino monomethylated residue","termid":"MOD:01680"},{"relation_name":"is_a","term_name":"N-methylated leucine","termid":"MOD:01808"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:00427"}],"interesting_parent_ids":["MOD:00427"],"is_obsolete":false,"name":"N-methyl-L-leucine","synonyms":[{"name":"(S)-2-methylamino-4-methylpentanoic acid","type":"exact"},{"name":"2-(methylamino)-4-methyl-valeric acid","type":"exact"},{"name":"MOD_RES N-methylleucine","type":"exact"},{"name":"Methyl","type":"related"},{"name":"Methylation","type":"related"},{"name":"N-methyl-L-leucine","type":"exact"},{"name":"N-methylated L-leucine","type":"exact"},{"name":"N-methylleucine","type":"exact"},{"name":"NMe1Leu","type":"exact"}],"termid":"MOD:00342"}


id: SO:0001142
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"The peptide twists in an anticlockwise, left handed manner. The dihedral angles for this turn are: Residue(i): -140 degrees < chi(1) -120 degrees < -20 degrees, -90 degrees psi +120 degrees < +40 degrees, residue(i+1): -140 degrees < phi < -20 degrees, -90 < psi < +40 degrees.","definition_xrefs":["EBIBS:GAR"],"direct_ancestors":[{"relation_name":"is_a","term_name":"serine_threonine_turn","termid":"SO:0001141"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"SO:0000839"}],"interesting_parent_ids":["SO:0000839"],"is_obsolete":false,"name":"st_turn_left_handed_type_one","secondary_identifiers":["BS:00234"],"synonyms":[{"name":"st turn left handed type one","type":"exact"},{"name":"st_turn_il","type":"exact"}],"termid":"SO:0001142"}


id: PBO:0070810
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L12 pseudogene 40","termid":"PBO:0070810"}


id: PBO:0082870
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Coronin; cortical actin cytoskeletal component that associates with the Arp2p/Arp3p complex to regulate its activity; plays a role in regulation of actin patch assembly","termid":"PBO:0082870"}


id: GO:0060883
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that mediates interactions between a cell and its surroundings that modulates of the rate, frequency or extent of basement membrane disassembly involved in semicircular canal fusion.","definition_xrefs":["GOC:tb","GOC:dph","GOC:sdb_2009"],"gene_count":0,"genotype_count":0,"name":"obsolete regulation of basement membrane disassembly involved in semicircular canal fusion by cell communication (obsolete GO:0060883)","synonyms":[{"name":"regulation of basal lamina disassembly involved in semicircular canal fusion by cell communication","type":"related"}],"termid":"GO:0060883"}


id: PBO:0059758
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MT-CO3 pseudogene 32","termid":"PBO:0059758"}


id: PBO:0087036
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Ribosomal 60S subunit protein L17B; required for processing of 27SB pre-rRNA and formation of stable 66S assembly intermediates; homologous to mammalian ribosomal protein L17 and bacterial L22; RPL17B has a paralog, RPL17A, that arose from the whole genome duplication","termid":"PBO:0087036"}


id: PBO:0067105
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 147, pseudogene","termid":"PBO:0067105"}


id: GO:1901060
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of p-hydroxyphenyl lignin.","definition_xrefs":["GOC:TermGenie","GOC:mengo_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"lignin biosynthetic process","termid":"GO:0009809"},{"relation_name":"is_a","term_name":"p-hydroxyphenyl lignin metabolic process","termid":"GO:1901058"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0019748"}],"interesting_parent_ids":["GO:0008150","GO:0019748"],"is_obsolete":false,"name":"p-hydroxyphenyl lignin biosynthetic process","synonyms":[{"name":"H-lignin biosynthetic process","type":"exact"},{"name":"p-hydroxyphenyl lignin anabolism","type":"exact"},{"name":"p-hydroxyphenyl lignin biosynthesis","type":"exact"},{"name":"p-hydroxyphenyl lignin formation","type":"exact"},{"name":"p-hydroxyphenyl lignin synthesis","type":"exact"}],"termid":"GO:1901060"}


id: FYPO:0005811
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the biogenesis of nuclear membrane that normally forms part of mitosis is abnormal.","definition_xrefs":["PomBase:mah","PMID:26869222"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal mitosis","termid":"FYPO:0000337"},{"relation_name":"is_a","term_name":"abnormal nuclear envelope organization","termid":"FYPO:0000815"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000337"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0000337","FYPO:0000631","FYPO:0001985","FYPO:0001320","FYPO:0000002"],"is_obsolete":false,"name":"abnormal nuclear membrane biogenesis involved in mitosis","synonyms":[{"name":"abnormal membrane addition to the nuclear membrane during division","type":"exact"},{"name":"abnormal nuclear membrane biogenesis involved in mitosis during vegetative growth","type":"exact"},{"name":"abnormal nuclear membrane biogenesis involved in mitotic nuclear division","type":"exact"},{"name":"abnormal nuclear membrane biogenesis involved nuclear division during mitotic cell cycle","type":"related"}],"termid":"FYPO:0005811"}


id: GO:0004066
data:
  {"annotated_genes":["SJAG_02832","SJAG_04549"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[77941,106062],"is_not":false,"summary":null,"term":"GO:0004066"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: ATP + L-aspartate + L-glutamine = AMP + diphosphate + L-asparagine + L-glutamate.","definition_xrefs":["RHEA:12228","EC:6.3.5.4"],"direct_ancestors":[{"relation_name":"is_a","term_name":"carbon-nitrogen ligase activity, with glutamine as amido-N-donor","termid":"GO:0016884"}],"gene_count":2,"genes_by_uniquename":{"SJAG_02832":null,"SJAG_04549":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016874"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016874","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"asparagine synthase (glutamine-hydrolyzing) activity","references_by_uniquename":{"GO_REF:0000107":null,"PMID:21873635":null},"secondary_identifiers":["MetaCyc:ASNSYNB-RXN","Reactome:R-HSA-70599"],"synonyms":[{"name":"AS","type":"related"},{"name":"AS-B activity","type":"related"},{"name":"L-aspartate:L-glutamine amido-ligase (AMP-forming)","type":"related"},{"name":"asparagine synthase (glutamine-hydrolysing)","type":"related"},{"name":"asparagine synthetase (glutamine-hydrolysing)","type":"related"},{"name":"asparagine synthetase (glutamine-hydrolyzing) activity","type":"related"},{"name":"asparagine synthetase B activity","type":"related"},{"name":"glutamine-dependent asparagine synthetase activity","type":"related"}],"termid":"GO:0004066","terms_by_termid":{"GO:0004066":null}}


id: PBO:0090834
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"plasma membrane thiamine/proton high affinity transmembrane transporter Thi9","termid":"PBO:0090834"}


id: PATO:0000747
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0000747 coordination value (obsolete PATO:0000747)","termid":"PATO:0000747"}


id: PBO:0070621
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L7 like 1 pseudogene 5","termid":"PBO:0070621"}


id: GO:1903630
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of aminoacyl-tRNA ligase activity.","definition_xrefs":["PMID:2280766","GO_REF:0000059","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of ligase activity","termid":"GO:0051340"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of aminoacyl-tRNA ligase activity","synonyms":[{"name":"regulation of aminoacyl-tRNA synthetase activity","type":"exact"},{"name":"regulation of aminoacyl-tRNA synthetase auxiliary protein activity","type":"related"}],"termid":"GO:1903630"}


id: GO:0047389
data:
  {"annotated_genes":["SJAG_00622"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[71671],"is_not":false,"summary":null,"term":"GO:0047389"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: H2O + L-1-glycero-3-phosphocholine = glycerol-3-phosphate + choline.","definition_xrefs":["EC:3.1.4.2","MetaCyc:3.1.4.2-RXN"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phosphoric diester hydrolase activity","termid":"GO:0008081"}],"gene_count":1,"genes_by_uniquename":{"SJAG_00622":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016788"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016787"}],"interesting_parent_ids":["GO:0016788","GO:0003674","GO:0003824","GO:0016787"],"is_obsolete":false,"name":"glycerophosphocholine phosphodiesterase activity","references_by_uniquename":{"PMID:21873635":null},"secondary_identifiers":["RHEA:16061","Reactome:R-HSA-6814132"],"synonyms":[{"name":"glycerolphosphorylcholine phosphodiesterase activity","type":"related"},{"name":"glycerophosphinicocholine diesterase activity","type":"related"},{"name":"glycerophosphohydrolase activity","type":"related"},{"name":"glycerylphosphorylcholinediesterase activity","type":"related"},{"name":"sn-glycero-3-phosphocholine glycerophosphohydrolase activity","type":"related"},{"name":"sn-glycero-3-phosphorylcholine diesterase activity","type":"related"}],"termid":"GO:0047389","terms_by_termid":{"GO:0047389":null}}


id: PBO:0002493
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Golgi transport protein Sft2 (predicted)","termid":"PBO:0002493"}


id: PBO:0043677
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"coronin 2A","termid":"PBO:0043677"}


id: PBO:0045525
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DTWD1 pseudogene 1","termid":"PBO:0045525"}


id: PBO:0069572
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 844, pseudogene","termid":"PBO:0069572"}


id: PBO:0079712
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ubiquilin 4 pseudogene 2","termid":"PBO:0079712"}


id: GO:0050191
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 3-phospho-D-glycerate + GTP = 3-phospho-D-glyceroyl phosphate + GDP + H+.","definition_xrefs":["EC:2.7.2.10","RHEA:23332"],"direct_ancestors":[{"relation_name":"is_a","term_name":"kinase activity","termid":"GO:0016301"},{"relation_name":"is_a","term_name":"phosphotransferase activity, carboxyl group as acceptor","termid":"GO:0016774"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016301"},{"rel_name":"is_a","termid":"GO:0016740"}],"interesting_parent_ids":["GO:0003824","GO:0016301","GO:0016740","GO:0003674"],"is_obsolete":false,"name":"phosphoglycerate kinase (GTP) activity","secondary_identifiers":["MetaCyc:PHOSPHOGLYCERATE-KINASE-GTP-RXN","KEGG_REACTION:R01517"],"synonyms":[{"name":"GTP:3-phospho-D-glycerate 1-phosphotransferase activity","type":"related"}],"termid":"GO:0050191"}


id: GO:0032828
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of natural killer cell differentiation as part of an immune response.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of immune effector process","termid":"GO:0002699"},{"relation_name":"is_a","term_name":"positive regulation of natural killer cell differentiation","termid":"GO:0032825"},{"relation_name":"is_a","term_name":"regulation of natural killer cell differentiation involved in immune response","termid":"GO:0032826"},{"relation_name":"is_a","term_name":"positive regulation of immune response","termid":"GO:0050778"},{"relation_name":"positively_regulates","term_name":"natural killer cell differentiation involved in immune response","termid":"GO:0002325"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of natural killer cell differentiation involved in immune response","synonyms":[{"name":"activation of natural killer cell differentiation during immune response","type":"narrow"},{"name":"positive regulation of NK cell differentiation during immune response","type":"related"},{"name":"positive regulation of natural killer cell development involved in immune response","type":"related"},{"name":"positive regulation of natural killer cell differentiation during immune response","type":"related"},{"name":"stimulation of natural killer cell differentiation during immune response","type":"narrow"},{"name":"up regulation of natural killer cell differentiation during immune response","type":"related"},{"name":"up-regulation of natural killer cell differentiation during immune response","type":"related"},{"name":"upregulation of natural killer cell differentiation during immune response","type":"related"}],"termid":"GO:0032828"}


id: GO:0102253
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: neoagarobiose + H2O = 3,6-anhydro-alpha-L-galactopyranose + beta-D-galactoside.","definition_xrefs":["EC:3.2.1.159","GOC:pz"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hydrolase activity, hydrolyzing O-glycosyl compounds","termid":"GO:0004553"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016798"},{"rel_name":"is_a","termid":"GO:0016787"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016787","GO:0016798"],"is_obsolete":false,"name":"neoagarobiose 1,3-alpha-3,6-anhydro-L-galactosidase activity","secondary_identifiers":["MetaCyc:RXN-12426"],"termid":"GO:0102253"}


id: GO:0018189
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of the cofactor pyrroloquinoline quinone (PQQ); it is synthesized from a small peptide containing tyrosine and glutamic acid; these amino acids in the peptide are multiply cross-linked and the rest of the peptide is removed.","definition_xrefs":["PMID:7665488","RESID:AA0283"],"direct_ancestors":[{"relation_name":"is_a","term_name":"heterocycle biosynthetic process","termid":"GO:0018130"},{"relation_name":"is_a","term_name":"cellular nitrogen compound biosynthetic process","termid":"GO:0044271"},{"relation_name":"is_a","term_name":"tricarboxylic acid biosynthetic process","termid":"GO:0072351"},{"relation_name":"is_a","term_name":"organic cyclic compound biosynthetic process","termid":"GO:1901362"},{"relation_name":"is_a","term_name":"organonitrogen compound biosynthetic process","termid":"GO:1901566"},{"relation_name":"is_a","term_name":"quinone biosynthetic process","termid":"GO:1901663"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0044281","GO:0008150"],"is_obsolete":false,"name":"pyrroloquinoline quinone biosynthetic process","synonyms":[{"name":"PQQ biosynthesis","type":"exact"},{"name":"PQQ biosynthetic process","type":"exact"},{"name":"coenzyme pyrroloquinoline-quinone biosynthesis","type":"exact"},{"name":"coenzyme pyrroloquinoline-quinone biosynthetic process","type":"exact"},{"name":"pyrroloquinoline quinone anabolism","type":"exact"},{"name":"pyrroloquinoline quinone biosynthesis","type":"exact"},{"name":"pyrroloquinoline quinone formation","type":"exact"},{"name":"pyrroloquinoline quinone synthesis","type":"exact"},{"name":"pyrroloquinoline-quinone biosynthesis","type":"exact"},{"name":"pyrroloquinoline-quinone biosynthetic process","type":"exact"}],"termid":"GO:0018189"}


id: PBO:0109384
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"testis expressed transcript, Y-linked 15","termid":"PBO:0109384"}


id: FYPO:0009102
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A physical cellular phenotype observed in the vegetative growth phase of the life cycle in which cells contain less cytoplasmic microtubules than normal during interphase of the mitotic cell cycle.","direct_ancestors":[{"relation_name":"is_a","term_name":"microtubules present in decreased numbers","termid":"FYPO:0003430"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0002399"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0000054"},{"rel_name":"output_of","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0005447","FYPO:0001985","FYPO:0000054","FYPO:0002399","FYPO:0001320"],"is_obsolete":false,"name":"interphase microtubules present in decreased numbers","synonyms":[{"name":"decreased number of interphase microtubules","type":"exact"},{"name":"fewer microtubules present during mitotic interphase","type":"exact"}],"termid":"FYPO:0009102"}


id: RO:HOM0000011
data:
  {"annotation_feature_type":"gene","cv_name":"relationship","definition":"Historical homology that involves genes that diverged after a duplication event.","direct_ancestors":[{"relation_name":"is_a","term_name":"in_historical_homology_relationship_with","termid":"RO:HOM0000007"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"in_paralogy_relationship_with","synonyms":[{"name":"paralogous to","type":"exact"}],"termid":"RO:HOM0000011"}


id: PBO:0002778
data:
  {"annotation_feature_type":"gene","cv_name":"name_description","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Cryptic Loci Regulator","termid":"PBO:0002778"}


id: PBO:0076869
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"testis expressed 15, meiosis and synapsis associated","termid":"PBO:0076869"}


id: PBO:0039415
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"angiogenin","termid":"PBO:0039415"}


id: GO:0036526
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The removal of a sugar or dicarbonyl from a cysteine residue of a glycated protein.","definition_xrefs":["PMID:14568004","GOC:bf","GOC:PARL","PMID:25416785"],"direct_ancestors":[{"relation_name":"is_a","term_name":"peptidyl-cysteine modification","termid":"GO:0018198"},{"relation_name":"is_a","term_name":"protein deglycation","termid":"GO:0036525"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"peptidyl-cysteine deglycation","synonyms":[{"name":"deglycation of N-acetylcysteine","type":"related"}],"termid":"GO:0036526"}


id: PBO:0003991
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"6-phosphofructokinase (predicted)","termid":"PBO:0003991"}


id: FYPO:0004261
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the phosphorylation of one or more specific proteins, or of specific protein sites, occurs to a lower extent than normal during G2 phase of the mitotic cell cycle and during a cellular response to ionizing radiation.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased protein phosphorylation during cellular response to ionizing radiation","termid":"FYPO:0002470"},{"relation_name":"is_a","term_name":"decreased protein phosphorylation during mitotic G2 phase","termid":"FYPO:0004111"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0002494"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0002274"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0002494","FYPO:0000002","FYPO:0002274","FYPO:0005447","FYPO:0001985","FYPO:0001320"],"is_obsolete":false,"name":"decreased protein phosphorylation during mitotic G2 phase during cellular response to ionizing radiation","synonyms":[{"name":"decreased protein phosphorylation during cellular response to ionizing radiation during G2 phase of mitotic cell cycle","type":"exact"},{"name":"decreased protein phosphorylation during cellular response to ionizing radiation during mitotic G2 phase","type":"exact"},{"name":"decreased protein phosphorylation during mitotic G2 phase during cellular response to IR","type":"exact"},{"name":"decreased protein phosphorylation during mitotic G2 phase during cellular response to ionizing radiation during vegetative growth","type":"exact"},{"name":"reduced protein phosphorylation during mitotic G2 phase during cellular response to IR","type":"exact"},{"name":"reduced protein phosphorylation during mitotic G2 phase during cellular response to ionizing radiation","type":"exact"}],"termid":"FYPO:0004261"}


