# terms

id: PATO:0001711
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"An 1-D extent quality inhering in two-dimensional bearer by virtue of being equal to the distance around it.","definition_xrefs":["Wikipedia:http://en.wikipedia.org/wiki/Perimeter"],"direct_ancestors":[{"relation_name":"is_a","term_name":"length","termid":"PATO:0000122"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"perimeter","termid":"PATO:0001711"}


id: CHEBI:45979
data:
  {"annotation_feature_type":"gene","cv_name":"chebi_ontology","direct_ancestors":[{"relation_name":"is_a","term_name":"chemical entity","termid":"CHEBI:24431"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"thiabendazole","termid":"CHEBI:45979"}


id: PBO:0058429
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 4799","termid":"PBO:0058429"}


id: PBO:0018033
data:
  {"annotation_feature_type":"gene","cv_name":"name_description","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Nuclear PassenGer=","termid":"PBO:0018033"}


id: GO:0043511
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"Heterodimeric hormone composed of an inhibin alpha subunit complexed with either an inhibin beta-A subunit, to form inhibin A, or an inhibin beta-B subunit, to form inhibin B.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein-containing complex","termid":"GO:0032991"},{"relation_name":"part_of","term_name":"extracellular space","termid":"GO:0005615"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0005576"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0032991","GO:0005576","GO:0005575"],"is_obsolete":false,"name":"inhibin complex","termid":"GO:0043511"}


id: FYPO:0006053
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A physical cellular phenotype in which the spore cytoplasm contains fewer lipid droplets than normal. Some lipid droplets are present in the ascus epiplasm instead.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal cellular physical quality phenotype","termid":"FYPO:0004638"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000002"],"is_obsolete":false,"name":"lipid droplets present in spore cytoplasm in decreased numbers, mislocalized to ascus epiplasm","synonyms":[{"name":"decreased lipid droplet level in spore cytoplasm, with droplets mislocalized to ascus epiplasm","type":"exact"},{"name":"lipid droplets present in spore cytoplasm in reduced numbers, mislocalized to ascus epiplasm","type":"exact"},{"name":"reduced inclusion of lipid droplets in spore cytoplasm, mislocalized to ascus cytoplasm","type":"exact"}],"termid":"FYPO:0006053"}


id: PBO:0030934
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abolished_protein_ubiquitination","termid":"PBO:0030934"}


id: PATO:0002269
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A structural quality of the collection or massing of one physical object within another physical object.","definition_xrefs":["PATOC:CVC"],"direct_ancestors":[{"relation_name":"is_a","term_name":"structure","termid":"PATO:0000141"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"accumulation","synonyms":[{"name":"pooled","type":"related"}],"termid":"PATO:0002269"}


id: GO:0032782
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The regulated release of bile acid, composed of any of a group of steroid carboxylic acids occurring in bile, by a cell or a tissue.","definition_xrefs":["GOC:ecd"],"direct_ancestors":[{"relation_name":"is_a","term_name":"monocarboxylic acid transport","termid":"GO:0015718"},{"relation_name":"is_a","term_name":"acid secretion","termid":"GO:0046717"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0006810","GO:0008150","GO:0051179"],"is_obsolete":false,"name":"bile acid secretion","termid":"GO:0032782"}


id: GO:0019262
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of N-acetylneuraminate, the anion of 5-(acetylamino)-3,5-dideoxy-D-glycero-D-galacto-non-3-ulosonic acid.","definition_xrefs":["ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"N-acetylneuraminate metabolic process","termid":"GO:0006054"},{"relation_name":"is_a","term_name":"amino sugar catabolic process","termid":"GO:0046348"},{"relation_name":"is_a","term_name":"carboxylic acid catabolic process","termid":"GO:0046395"},{"relation_name":"is_a","term_name":"organonitrogen compound catabolic process","termid":"GO:1901565"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0044248"}],"interesting_parent_ids":["GO:0008150","GO:0044281","GO:0044248"],"is_obsolete":false,"name":"N-acetylneuraminate catabolic process","secondary_identifiers":["MetaCyc:P441-PWY"],"synonyms":[{"name":"N-acetylneuraminate breakdown","type":"exact"},{"name":"N-acetylneuraminate catabolism","type":"exact"},{"name":"N-acetylneuraminate degradation","type":"exact"}],"termid":"GO:0019262"}


id: GO:0007595
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The regulated release of milk from the mammary glands and the period of time that a mother lactates to feed her young.","definition_xrefs":["ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"body fluid secretion","termid":"GO:0007589"},{"relation_name":"part_of","term_name":"mammary gland development","termid":"GO:0030879"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0051179","GO:0006810","GO:0008150"],"is_obsolete":false,"name":"lactation","secondary_identifiers":["Wikipedia:Lactation"],"synonyms":[{"name":"milk secretion","type":"exact"}],"termid":"GO:0007595"}


id: PBO:0090483
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"1-acylglycerol-3-phosphate O-acyltransferase Vps66","termid":"PBO:0090483"}


id: PBO:0109015
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SSX family member 16, pseudogene","termid":"PBO:0109015"}


id: PBO:0078244
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"T cell receptor beta variable 23-1 (non-functional)","termid":"PBO:0078244"}


id: SO:0000696
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A short oligonucleotide sequence, of length on the order of 10's of bases; either single or double stranded.","definition_xrefs":["SO:ma"],"direct_ancestors":[{"relation_name":"is_a","term_name":"reagent","termid":"SO:0000695"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"oligo","secondary_identifiers":["http://en.wikipedia.org/wiki/Oligonucleotide"],"synonyms":[{"name":"oligonucleotide","type":"exact"}],"termid":"SO:0000696"}


id: PBO:0041006
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"BORCS7-ASMT readthrough (NMD candidate)","termid":"PBO:0041006"}


id: GO:0015346
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ferric triacetylfusarinine C(out) + H+(out) = ferric triacetylfusarinine C(in) + H+(in).","definition_xrefs":["TC:2.A.1.16.3"],"direct_ancestors":[{"relation_name":"is_a","term_name":"solute:proton symporter activity","termid":"GO:0015295"},{"relation_name":"is_a","term_name":"siderophore-iron transmembrane transporter activity","termid":"GO:0015343"},{"relation_name":"is_a","term_name":"ferric triacetylfusarinine C transmembrane transporter activity","termid":"GO:0015621"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0005215","GO:0003674","GO:0022857"],"is_obsolete":false,"name":"ferric triacetylfusarinine C:proton symporter activity","synonyms":[{"name":"ferric triacetylfusarinine C:hydrogen symporter activity","type":"exact"}],"termid":"GO:0015346"}


id: PBO:0028690
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_prospore-specific_spindle_pole_body_remodeling","termid":"PBO:0028690"}


id: SO:0001603
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A sequence variant with in the CDS that causes a change in the resulting polypeptide sequence.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"translational_product_structure_variant","termid":"SO:0001598"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"polypeptide_sequence_variant","synonyms":[{"name":"polypeptide sequence variant","type":"exact"}],"termid":"SO:0001603"}


id: GO:0050272
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 3-chloro-L-alanine + thioglycolate = S-carboxymethyl-L-cysteine + chloride + H+.","definition_xrefs":["EC:4.5.1.5","RHEA:22868"],"direct_ancestors":[{"relation_name":"is_a","term_name":"carbon-halide lyase activity","termid":"GO:0016848"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016829"}],"interesting_parent_ids":["GO:0016829","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"S-carboxymethylcysteine synthase activity","secondary_identifiers":["KEGG_REACTION:R04003","MetaCyc:S-CARBOXYMETHYLCYSTEINE-SYNTHASE-RXN"],"synonyms":[{"name":"3-chloro-L-alanine chloride-lyase (adding thioglycolate)","type":"related"},{"name":"3-chloro-L-alanine chloride-lyase (adding thioglycolate; S-carboxymethyl-L-cysteine-forming)","type":"related"},{"name":"S-carboxymethyl-L-cysteine synthase activity","type":"related"}],"termid":"GO:0050272"}


id: PBO:0069081
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 328, pseudogene","termid":"PBO:0069081"}


id: GO:0075323
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates, maintains or increases the frequency, rate or extent of oomycete sporangium development, a process that leads to the formation of oomycete sporangium, a single-celled or many-celled structure that germinates directly to form an infection hypha or differentiate, through specialized cleavage vesicles, into between 10 and 30 zoospores, which is laterally flagellated.","definition_xrefs":["GOC:pamgo_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of sporulation","termid":"GO:0043938"},{"relation_name":"is_a","term_name":"positive regulation of sporangium development","termid":"GO:0075311"},{"relation_name":"is_a","term_name":"regulation of oomycete sporangium development","termid":"GO:0075322"},{"relation_name":"is_a","term_name":"positive regulation of asexual reproduction","termid":"GO:1903666"},{"relation_name":"positively_regulates","term_name":"oomycete sporangium development","termid":"GO:0075321"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of oomycete sporangium development","termid":"GO:0075323"}


id: PBO:0063143
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"prostate and testis expressed 3","termid":"PBO:0063143"}


id: PBO:0027796
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_growth_on_oxaliplatin","termid":"PBO:0027796"}


id: GO:0038025
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Combining with the secreted glycoprotein reelin, and transmitting the signal from one side of the membrane to the other to initiate a change in cell activity.","definition_xrefs":["PMID:12827279","GOC:bf","PMID:20223215"],"direct_ancestors":[{"relation_name":"is_a","term_name":"transmembrane signaling receptor activity","termid":"GO:0004888"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0038023"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0038023"],"is_obsolete":false,"name":"reelin receptor activity","synonyms":[{"name":"reeler receptor activity","type":"exact"}],"termid":"GO:0038025"}


id: MOD:00243
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively crosslinks an L-cysteine residue and an L-serine residue to form L-cysteine oxazole-4-carboxylic acid.","definition_xrefs":["PubMed:8895467","PubMed:8183941","RESID:AA0238"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxazole/oxazoline ring crosslinked residues (Ser)","termid":"MOD:01421"},{"relation_name":"is_a","term_name":"didehydrogenated residue","termid":"MOD:01888"},{"relation_name":"is_a","term_name":"crosslinked L-cysteine residue","termid":"MOD:02044"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"L-cysteine oxazole-4-carboxylic acid","synonyms":[{"name":"2-(1-azanyl-2-sulfanylethyl)-4-oxazolecarboxylic acid","type":"exact"},{"name":"2-[(1R)-1-amino-2-sulfanylethyl]-1,3-oxazole-4-carboxylic acid","type":"exact"},{"name":"CROSSLNK Oxazole-4-carboxylic acid (Cys-Ser)","type":"exact"},{"name":"L-cysteine oxazole-4-carboxylic acid","type":"exact"}],"termid":"MOD:00243"}


id: SO:1001195
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A gene that is alternately spliced, and encodes more than one polypeptide, that have overlapping peptide sequences.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"encodes_greater_than_1_polypeptide","termid":"SO:1001189"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"encodes_overlapping_peptides","synonyms":[{"name":"encodes overlapping peptides","type":"exact"}],"termid":"SO:1001195"}


id: GO:0061367
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in the behaviour of an organism as a result of an acetic acid pain stimulus.","definition_xrefs":["GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"behavioral response to chemical pain","termid":"GO:0061366"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"behavioral response to acetic acid induced pain","termid":"GO:0061367"}


id: PBO:0076344
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"synaptotagmin 11","termid":"PBO:0076344"}


id: GO:1901147
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any mesenchymal cell apoptotic process that is involved in metanephric nephron morphogenesis.","definition_xrefs":["GOC:TermGenie","GOC:mtg_apoptosis"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mesenchymal cell apoptotic process involved in metanephros development","termid":"GO:1900200"},{"relation_name":"is_a","term_name":"mesenchymal cell apoptotic process involved in nephron morphogenesis","termid":"GO:1901145"},{"relation_name":"part_of","term_name":"metanephric nephron morphogenesis","termid":"GO:0072273"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"mesenchymal cell apoptotic process involved in metanephric nephron morphogenesis","termid":"GO:1901147"}


id: GO:0043414
data:
  {"annotated_genes":["SJAG_00886","SJAG_02099","SJAG_02352","SJAG_00943","SJAG_01269","SJAG_05334","SJAG_03008","SJAG_02386","SJAG_02302","SJAG_03773","SJAG_04181","SJAG_03289","SJAG_01958","SJAG_03410","SJAG_00722","SJAG_05249","SJAG_03713","SJAG_02350","SJAG_01375","SJAG_03901","SJAG_03877","SJAG_04367","SJAG_02042","SJAG_00499","SJAG_02024","SJAG_03367","SJAG_02821","SJAG_04993","SJAG_04649","SJAG_02377","SJAG_02637","SJAG_04848","SJAG_00255","SJAG_04034","SJAG_03332","SJAG_00325","SJAG_01261","SJAG_04736","SJAG_01314","SJAG_00744","SJAG_03016","SJAG_04890","SJAG_04453","SJAG_02417","SJAG_04680","SJAG_04735","SJAG_02281"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[74289],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0036261"},{"annotations":[77002],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0070901"},{"annotations":[59765],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0106005"},{"annotations":[78562,74820],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0070476"},{"annotations":[78230,77559,77567,74869,77118],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0070475"},{"annotations":[103710,74434,64434,77519,94370,59537,77968],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0031167"},{"annotations":[105483,89723,103430,106594,94303],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0000452"},{"annotations":[110849,114011],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0106004"},{"annotations":[102124,105443],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0106217"},{"annotations":[86136,101146],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0002946"},{"annotations":[74821,75389,84315,93603,107392,90283,73404,72128,75205,73559,72461,74682],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0030488"},{"annotations":[77005,94904],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0002939"},{"annotations":[99547,72948],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0002940"},{"annotations":[109998],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0002128"},{"annotations":[84012,89530],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0002127"},{"annotations":[98312,93378],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0002130"}]},"cv_name":"biological_process","definition":"The covalent attachment of a methyl residue to one or more monomeric units in a polypeptide, polynucleotide, polysaccharide, or other biological macromolecule.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"methylation","termid":"GO:0032259"},{"relation_name":"is_a","term_name":"macromolecule modification","termid":"GO:0043412"}],"gene_count":47,"genes_by_uniquename":{"SJAG_00255":null,"SJAG_00325":null,"SJAG_00499":null,"SJAG_00722":null,"SJAG_00744":null,"SJAG_00886":null,"SJAG_00943":null,"SJAG_01261":null,"SJAG_01269":null,"SJAG_01314":null,"SJAG_01375":null,"SJAG_01958":null,"SJAG_02024":null,"SJAG_02042":null,"SJAG_02099":null,"SJAG_02281":null,"SJAG_02302":null,"SJAG_02350":null,"SJAG_02352":null,"SJAG_02377":null,"SJAG_02386":null,"SJAG_02417":null,"SJAG_02637":null,"SJAG_02821":null,"SJAG_03008":null,"SJAG_03016":null,"SJAG_03289":null,"SJAG_03332":null,"SJAG_03367":null,"SJAG_03410":null,"SJAG_03713":null,"SJAG_03773":null,"SJAG_03877":null,"SJAG_03901":null,"SJAG_04034":null,"SJAG_04181":null,"SJAG_04367":null,"SJAG_04453":null,"SJAG_04649":null,"SJAG_04680":null,"SJAG_04735":null,"SJAG_04736":null,"SJAG_04848":null,"SJAG_04890":null,"SJAG_04993":null,"SJAG_05249":null,"SJAG_05334":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"macromolecule methylation","references_by_uniquename":{"GO_REF:0000104":null,"GO_REF:0000107":null,"GO_REF:0000108":null,"PMID:21873635":null},"termid":"GO:0043414","terms_by_termid":{"GO:0000452":null,"GO:0002127":null,"GO:0002128":null,"GO:0002130":null,"GO:0002939":null,"GO:0002940":null,"GO:0002946":null,"GO:0030488":null,"GO:0031167":null,"GO:0036261":null,"GO:0070475":null,"GO:0070476":null,"GO:0070901":null,"GO:0106004":null,"GO:0106005":null,"GO:0106217":null}}


id: FYPO:0003096
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which methylation of lysine at position 9 of histone H3 in centromere outer repeat regions occurs to a lower extent than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased histone H3-K9 methylation during vegetative growth","termid":"FYPO:0000872"},{"relation_name":"is_a","term_name":"abnormal histone methylation at centromere during vegetative growth","termid":"FYPO:0007374"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0002494"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0002274"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0000002","FYPO:0005447","FYPO:0002274","FYPO:0002494","FYPO:0001985"],"is_obsolete":false,"name":"decreased histone H3-K9 methylation at centromere outer repeat during vegetative growth","synonyms":[{"name":"decreased histone H3 K9 methylation at centromere outer repeat during vegetative growth","type":"exact"},{"name":"decreased histone H3-K9 methylation at centromere otr during vegetative growth","type":"exact"},{"name":"decreased histone H3-K9 methylation at centromere outer repeat during mitotic cell cycle","type":"related"},{"name":"decreased histone H3-K9 methylation at centromeric dg repeats during vegetative growth","type":"narrow"},{"name":"decreased histone H3-K9 methylation at centromeric outer repeat during vegetative growth","type":"exact"},{"name":"decreased histone H3-K9 methylation at pericentric region during vegetative growth","type":"related"},{"name":"decreased histone H3-K9 methylation at pericentromeric region during vegetative growth","type":"related"},{"name":"decreased histone H3K9me at centromere outer repeat during vegetative growth","type":"exact"},{"name":"decreased histone lysine H3 K9 methylation at centromere outer repeat during vegetative growth","type":"exact"},{"name":"reduced histone H3-K9 methylation at centromere outer repeat during vegetative growth","type":"exact"}],"termid":"FYPO:0003096"}


id: PBO:0060684
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NDRG family member 4","termid":"PBO:0060684"}


id: GO:0008682
data:
  {"annotated_genes":["SJAG_00459"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[73710],"is_not":false,"summary":null,"term":"GO:0008682"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: a 6-methoxy-3-methyl-2-all-trans-polyprenyl-1,4-benzoquinol + AH2 + O2 = A + a 3-demethylubiquinol + H2O.","definition_xrefs":["RHEA:50908"],"direct_ancestors":[{"relation_name":"is_a","term_name":"monooxygenase activity","termid":"GO:0004497"},{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen","termid":"GO:0016705"}],"gene_count":1,"genes_by_uniquename":{"SJAG_00459":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003824","GO:0016491","GO:0003674"],"is_obsolete":false,"name":"3-demethoxyubiquinol 3-hydroxylase activity","references_by_uniquename":{"PMID:21873635":null},"secondary_identifiers":["MetaCyc:OCTAPRENYL-METHYL-METHOXY-BENZOQ-OH-RXN","EC:1.14.99.60"],"synonyms":[{"name":"2-octoprenyl-3-methyl-6-methoxy-1,4-benzoquinone hydroxylase activity","type":"narrow"},{"name":"demethoxy-ubiquinone hydroxylase","type":"related"},{"name":"demethoxyubiquinone monooxygenase","type":"related"}],"termid":"GO:0008682","terms_by_termid":{"GO:0008682":null}}


id: PBO:0060402
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"N-alpha-acetyltransferase 10, NatA catalytic subunit","termid":"PBO:0060402"}


id: PBO:0058413
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 4782","termid":"PBO:0058413"}


id: PBO:0045623
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"double homeobox 4 like 35 (pseudogene)","termid":"PBO:0045623"}


id: PBO:0064925
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protein phosphatase 6 catalytic subunit","termid":"PBO:0064925"}


id: PBO:0050584
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"heparan sulfate 6-O-sulfotransferase 1 pseudogene 1","termid":"PBO:0050584"}


id: PBO:0034319
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-represses_expression_of","termid":"PBO:0034319"}


id: PBO:0002383
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"telomere end-binding protein Pot1","termid":"PBO:0002383"}


id: PBO:0031636
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abolished_gene_silencing","termid":"PBO:0031636"}


id: PBO:0066525
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RANBP2 like and GRIP domain containing 1","termid":"PBO:0066525"}


id: PBO:0087160
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA polymerase I enhancer binding protein; DNA binding protein that binds to genes transcribed by both RNA polymerase I and RNA polymerase II; required for termination of RNA polymerase I transcription; Reb1p bound to DNA acts to block RNA polymerase II readthrough transcription","termid":"PBO:0087160"}


id: GO:0100017
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any transcription from RNA polymerase II promoter process that negatively regulates single organismal cell-cell adhesion.","definition_xrefs":["GOC:obol","GOC:cjm"],"gene_count":0,"genotype_count":0,"name":"obsolete negative regulation of cell-cell adhesion by transcription from RNA polymerase II promoter (obsolete GO:0100017)","termid":"GO:0100017"}


id: GO:0043293
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A multisubunit protein complex involved in the signaling phase of the apoptotic process. In mammals it is typically composed of seven Apaf-1 subunits bound to cytochrome c and caspase-9. A similar complex to promote apoptosis is formed from homologous gene products in other eukaryotic organisms.","definition_xrefs":["PMID:11406413","PMID:10428850","PMID:15189137","PMID:12176339","GOC:mtg_apoptosis"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein-containing complex","termid":"GO:0032991"},{"relation_name":"part_of","term_name":"cytosol","termid":"GO:0005829"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"part_of","termid":"GO:0005829"}],"interesting_parent_ids":["GO:0005575","GO:0032991","GO:0005737","GO:0005829"],"is_obsolete":false,"name":"apoptosome","secondary_identifiers":["Wikipedia:Apoptosome"],"termid":"GO:0043293"}


id: PR:Q9UTR7
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- mcp3 gene.","definition_xrefs":["UniProtKB:Q9UTR7","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"meiotic coiled-coil protein 3 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC1006.04c","synonyms":[{"name":"Spom972h-mcp3","type":"exact"},{"name":"meiotically up-regulated gene 7 protein (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:Q9UTR7"}


id: GO:0090391
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process that is carried out at the cellular level which results in the assembly of a granum. A granum is a distinct stack of lamellae seen within chloroplasts.","definition_xrefs":["GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular component assembly","termid":"GO:0022607"},{"relation_name":"part_of","term_name":"chloroplast organization","termid":"GO:0009658"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0044085"}],"interesting_parent_ids":["GO:0044085","GO:0008150"],"is_obsolete":false,"name":"granum assembly","synonyms":[{"name":"grana formation","type":"exact"}],"termid":"GO:0090391"}


id: GO:0030056
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A cell-substrate junction (attachment structure) found in epithelial cells that links intermediate filaments to extracellular matrices via transmembrane complexes. In vertebrates, hemidesmosomes mediate contact between the basal side of epithelial cells and the basal lamina. In C. elegans, hemidesmosomes connect epithelial cells to distinct extracellular matrices on both the apical and basal cell surfaces.","definition_xrefs":["GOC:kmv","ISBN:0815316208","PMID:20205195"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell-substrate junction","termid":"GO:0030055"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"hemidesmosome","secondary_identifiers":["Wikipedia:Hemidesmosome"],"synonyms":[{"name":"epidermal attachment structure","type":"narrow"},{"name":"fibrous organelle","type":"narrow"},{"name":"hemi-adherens junction","type":"related"},{"name":"trans-epithelial attachment","type":"narrow"}],"termid":"GO:0030056"}


id: GO:1905631
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a glyceraldehyde stimulus.","definition_xrefs":["GOC:TermGenie","PMID:11377826","GO_REF:0000071"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular response to monosaccharide stimulus","termid":"GO:0071326"},{"relation_name":"is_a","term_name":"response to glyceraldehyde","termid":"GO:1905630"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cellular response to glyceraldehyde","termid":"GO:1905631"}


id: GO:0042532
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of the introduction of a phosphate group to a tyrosine residue of a STAT (Signal Transducer and Activator of Transcription) protein.","definition_xrefs":["PMID:11426647","GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of tyrosine phosphorylation of STAT protein","termid":"GO:0042509"},{"relation_name":"is_a","term_name":"negative regulation of receptor signaling pathway via JAK-STAT","termid":"GO:0046426"},{"relation_name":"is_a","term_name":"negative regulation of peptidyl-tyrosine phosphorylation","termid":"GO:0050732"},{"relation_name":"negatively_regulates","term_name":"tyrosine phosphorylation of STAT protein","termid":"GO:0007260"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0023052"},{"rel_name":"negatively_regulates","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"negative regulation of tyrosine phosphorylation of STAT protein","secondary_identifiers":["GO:0042530","GO:0042514","GO:0042521","GO:0042518","GO:0042512","GO:0042524","GO:0042527"],"synonyms":[{"name":"down regulation of tyrosine phosphorylation of STAT protein","type":"exact"},{"name":"down regulation of tyrosine phosphorylation of Stat1 protein","type":"narrow"},{"name":"down regulation of tyrosine phosphorylation of Stat2 protein","type":"narrow"},{"name":"down regulation of tyrosine phosphorylation of Stat3 protein","type":"narrow"},{"name":"down regulation of tyrosine phosphorylation of Stat4 protein","type":"narrow"},{"name":"down regulation of tyrosine phosphorylation of Stat5 protein","type":"narrow"},{"name":"down regulation of tyrosine phosphorylation of Stat6 protein","type":"narrow"},{"name":"down regulation of tyrosine phosphorylation of Stat7 protein","type":"narrow"},{"name":"down-regulation of tyrosine phosphorylation of STAT protein","type":"exact"},{"name":"down-regulation of tyrosine phosphorylation of Stat1 protein","type":"narrow"},{"name":"down-regulation of tyrosine phosphorylation of Stat2 protein","type":"narrow"},{"name":"down-regulation of tyrosine phosphorylation of Stat3 protein","type":"narrow"},{"name":"down-regulation of tyrosine phosphorylation of Stat4 protein","type":"narrow"},{"name":"down-regulation of tyrosine phosphorylation of Stat5 protein","type":"narrow"},{"name":"down-regulation of tyrosine phosphorylation of Stat6 protein","type":"narrow"},{"name":"down-regulation of tyrosine phosphorylation of Stat7 protein","type":"narrow"},{"name":"downregulation of tyrosine phosphorylation of STAT protein","type":"exact"},{"name":"downregulation of tyrosine phosphorylation of Stat1 protein","type":"narrow"},{"name":"downregulation of tyrosine phosphorylation of Stat2 protein","type":"narrow"},{"name":"downregulation of tyrosine phosphorylation of Stat3 protein","type":"narrow"},{"name":"downregulation of tyrosine phosphorylation of Stat4 protein","type":"narrow"},{"name":"downregulation of tyrosine phosphorylation of Stat5 protein","type":"narrow"},{"name":"downregulation of tyrosine phosphorylation of Stat6 protein","type":"narrow"},{"name":"downregulation of tyrosine phosphorylation of Stat7 protein","type":"narrow"},{"name":"inhibition of tyrosine phosphorylation of STAT protein","type":"narrow"},{"name":"inhibition of tyrosine phosphorylation of Stat1 protein","type":"narrow"},{"name":"inhibition of tyrosine phosphorylation of Stat2 protein","type":"narrow"},{"name":"inhibition of tyrosine phosphorylation of Stat3 protein","type":"narrow"},{"name":"inhibition of tyrosine phosphorylation of Stat4 protein","type":"narrow"},{"name":"inhibition of tyrosine phosphorylation of Stat5 protein","type":"narrow"},{"name":"inhibition of tyrosine phosphorylation of Stat6 protein","type":"narrow"},{"name":"inhibition of tyrosine phosphorylation of Stat7 protein","type":"narrow"},{"name":"negative regulation of tyrosine phosphorylation of Stat1 protein","type":"narrow"},{"name":"negative regulation of tyrosine phosphorylation of Stat2 protein","type":"narrow"},{"name":"negative regulation of tyrosine phosphorylation of Stat3 protein","type":"narrow"},{"name":"negative regulation of tyrosine phosphorylation of Stat4 protein","type":"narrow"},{"name":"negative regulation of tyrosine phosphorylation of Stat5 protein","type":"narrow"},{"name":"negative regulation of tyrosine phosphorylation of Stat6 protein","type":"narrow"},{"name":"negative regulation of tyrosine phosphorylation of Stat7 protein","type":"narrow"}],"termid":"GO:0042532"}


id: GO:0035951
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that activates or increases the frequency, rate or extent of oligopeptide transport by activating or increasing the frequency, rate or extent of transcription from an RNA polymerase II promoter.","definition_xrefs":["GOC:dgf"],"gene_count":0,"genotype_count":0,"name":"obsolete positive regulation of oligopeptide transport by positive regulation of transcription from RNA polymerase II promoter (obsolete GO:0035951)","synonyms":[{"name":"positive regulation of oligopeptide transport by activation of transcription from RNA polymerase II promoter","type":"exact"},{"name":"positive regulation of oligopeptide transport by positive regulation of transcription from Pol II promoter","type":"exact"},{"name":"positive regulation of oligopeptide transport by stimulation of transcription from RNA polymerase II promoter","type":"exact"},{"name":"positive regulation of oligopeptide transport by up regulation of transcription from RNA polymerase II promoter","type":"exact"},{"name":"positive regulation of oligopeptide transport by up-regulation of transcription from RNA polymerase II promoter","type":"exact"},{"name":"positive regulation of oligopeptide transport by upregulation of transcription from RNA polymerase II promoter","type":"exact"}],"termid":"GO:0035951"}


id: GO:0050625
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 2-hydroxy-1,4-benzoquinone + 2 H+ + NADH = benzene-1,2,4-triol + NAD+.","definition_xrefs":["EC:1.6.5.7","RHEA:12428"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor","termid":"GO:0016655"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0003824","GO:0016491","GO:0003674"],"is_obsolete":false,"name":"2-hydroxy-1,4-benzoquinone reductase activity","secondary_identifiers":["UM-BBD_reactionID:r0667","GO:0018540","KEGG_REACTION:R05399","MetaCyc:1.6.5.7-RXN"],"synonyms":[{"name":"1,2,4-trihydroxybenzene:NAD oxidoreductase activity","type":"related"},{"name":"1,2,4-trihydroxybenzene:NAD+ oxidoreductase activity","type":"related"},{"name":"2-hydroxy-1,4-benzoquinone:NADH oxidoreductase activity","type":"related"},{"name":"NADH:2-hydroxy-1,4-benzoquinone oxidoreductase activity","type":"related"},{"name":"hydroxybenzoquinone reductase activity","type":"related"}],"termid":"GO:0050625"}


id: FYPO:0001824
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A phenotype observed in the vegetative growth phase of the life cycle in which cells show increased sensitivity to trifluoperazine. Cells stop growing (and may die) at a concentration of trifluoperazine that allows wild type cells to grow.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased sensitivity to chemical during vegetative growth","termid":"FYPO:0000127"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000003"},{"rel_name":"is_a","termid":"FYPO:0002683"},{"rel_name":"is_a","termid":"FYPO:0000139"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0000003","FYPO:0000139","FYPO:0005447","FYPO:0001985","FYPO:0002683"],"is_obsolete":false,"name":"sensitive to trifluoperazine","synonyms":[{"name":"hypersensitive to trifluoperazine","type":"exact"},{"name":"sensitive to trifluoperazine during mitotic cell cycle","type":"related"},{"name":"sensitive to trifluoperazine during vegetative growth","type":"exact"}],"termid":"FYPO:0001824"}


id: FYPO:0003987
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A physical cellular phenotype observed in the vegetative growth phase of the life cycle in which the amount, distribution, or morphology of actin cortical patches is abnormal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal actin cytoskeleton during vegetative growth","termid":"FYPO:0002398"},{"relation_name":"output_of","term_name":"abnormal actin cortical patch organization","termid":"FYPO:0000790"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0004803"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"output_of","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"output_of","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0004803","FYPO:0001320","FYPO:0000002","FYPO:0001985"],"is_obsolete":false,"name":"abnormal actin cortical patch","synonyms":[{"name":"abnormal F-actin patch","type":"exact"},{"name":"abnormal actin cortical patch during mitotic cell cycle","type":"related"},{"name":"abnormal actin cortical patch during vegetative growth","type":"exact"},{"name":"abnormal actin cortical patches","type":"exact"},{"name":"abnormal actin patch","type":"exact"}],"termid":"FYPO:0003987"}


id: PBO:0082373
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Basic leucine zipper (bZIP) transcription factor; required for oxidative stress tolerance; activated by H2O2 through the multistep formation of disulfide bonds and transit from the cytoplasm to the nucleus; Yap1p is degraded in the nucleus after the oxidative stress has passed; mediates resistance to cadmium; relative distribution to the nucleus increases upon DNA replication stress; YAP1 has a paralog, CAD1, that arose from the whole genome duplication","termid":"PBO:0082373"}


id: FYPO:0003550
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype in which the amount of protein measured in a cell during one or both meiotic nuclear divisions is lower than normal. Total protein or a specific protein may be affected.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased protein level during meiotic cell cycle","termid":"FYPO:0004991"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"output_of","termid":"FYPO:0006551"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0005447","FYPO:0000002","FYPO:0006551"],"is_obsolete":false,"name":"decreased protein level during meiosis","synonyms":[{"name":"decreased protein accumulation during meiosis","type":"related"},{"name":"decreased protein level during meiotic nuclear division","type":"exact"},{"name":"reduced protein level during meiosis","type":"exact"}],"termid":"FYPO:0003550"}


id: GO:0106347
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: a 2'-O-methyladenosine in U2 snRNA + S-adenosyl-L-methionine = an N6-methyl-2'-O-methyladenosine in U2 snRNA + S-adenosyl-L-homocysteine + H+.","definition_xrefs":["RHEA:62672","PMID:31913360"],"direct_ancestors":[{"relation_name":"is_a","term_name":"snRNA methyltransferase activity","termid":"GO:0106346"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0016741"},{"rel_name":"is_a","termid":"GO:0140098"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0140098","GO:0016740","GO:0016741"],"is_obsolete":false,"name":"U2 snRNA 2'-O-methyladenosine m6 methyltransferase activity","termid":"GO:0106347"}


id: PBO:0055508
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2942","termid":"PBO:0055508"}


id: PBO:0081719
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein 648","termid":"PBO:0081719"}


id: GO:0032741
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate, or extent of interleukin-18 production.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of cytokine production","termid":"GO:0001819"},{"relation_name":"is_a","term_name":"regulation of interleukin-18 production","termid":"GO:0032661"},{"relation_name":"positively_regulates","term_name":"interleukin-18 production","termid":"GO:0032621"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"positively_regulates","termid":"GO:0010467"},{"rel_name":"regulates","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0010467","GO:0008150"],"is_obsolete":false,"name":"positive regulation of interleukin-18 production","secondary_identifiers":["GO:0150122","GO:0045383"],"synonyms":[{"name":"activation of interleukin-18 production","type":"narrow"},{"name":"positive regulation of IL-18 production","type":"exact"},{"name":"positive regulation of interleukin-18 biosynthetic process","type":"narrow"},{"name":"positive regulation of interleukin-18 secretion","type":"narrow"},{"name":"stimulation of interleukin-18 production","type":"narrow"},{"name":"up regulation of interleukin-18 production","type":"exact"},{"name":"up-regulation of interleukin-18 production","type":"exact"},{"name":"upregulation of interleukin-18 production","type":"exact"}],"termid":"GO:0032741"}


id: GO:0044833
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any viral process that modulates the frequency, rate or extent of protein transport in its host organism.","definition_xrefs":["GOC:jl","PMID:22334672"],"direct_ancestors":[{"relation_name":"is_a","term_name":"modulation by virus of host cellular process","termid":"GO:0019054"},{"relation_name":"is_a","term_name":"modulation by symbiont of host intracellular transport","termid":"GO:0052038"},{"relation_name":"regulates","term_name":"protein transport","termid":"GO:0015031"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0006810"],"is_obsolete":false,"name":"modulation by virus of host protein transport","termid":"GO:0044833"}


id: _global:maximally_overlaps
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A maximally_overlaps X iff all parts of A (including A itself) overlap both A and Y.","definition_xrefs":["PMID:20226267"],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"maximally_overlaps","termid":"_global:maximally_overlaps"}


id: MOD:00686
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-cysteine residue to L-selenocysteine (not known as a natural, post-translational modification process).","definition_xrefs":["PubMed:6217842","RESID:AA0022#CYS","PubMed:2037562","PubMed:6714945","Unimod:162#C","PubMed:10523135","PubMed:2963330"],"direct_ancestors":[{"relation_name":"is_a","term_name":"selenium substitution for sulfur","termid":"MOD:00007"},{"relation_name":"is_a","term_name":"L-selenocysteine residue","termid":"MOD:00031"},{"relation_name":"is_a","term_name":"modified L-cysteine residue","termid":"MOD:00905"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"L-selenocysteine (Cys)","synonyms":[{"name":"(2R)-2-amino-3-selanylpropanoic acid","type":"exact"},{"name":"2-azanyl-3-selanylpropanoic acid","type":"exact"},{"name":"3-selenylalanine","type":"exact"},{"name":"L-selenocysteine","type":"exact"},{"name":"NON_STD Selenocysteine","type":"exact"},{"name":"SeCys","type":"exact"},{"name":"Sec(Cys)","type":"exact"},{"name":"selenium cysteine","type":"exact"}],"termid":"MOD:00686"}


id: PBO:0110425
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"UBE2D3 pseudogene 5","termid":"PBO:0110425"}


id: SO:0000510
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"Genomic DNA of immunoglobulin/T-cell receptor gene in partially rearranged genomic DNA including L-part1, V-intron and V-D-exon, with the 5' UTR (SO:0000204) and 3' UTR (SO:0000205).","direct_ancestors":[{"relation_name":"is_a","term_name":"vertebrate_immunoglobulin_T_cell_receptor_rearranged_segment","termid":"SO:0000936"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"VD_gene_segment","synonyms":[{"name":"VD gene","type":"exact"},{"name":"V_D_GENE","type":"exact"}],"termid":"SO:0000510"}


id: GO:0018993
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The determination of sex and sexual phenotypes in an organism's soma.","definition_xrefs":["GOC:ems"],"direct_ancestors":[{"relation_name":"is_a","term_name":"sex determination","termid":"GO:0007530"},{"relation_name":"part_of","term_name":"multicellular organism development","termid":"GO:0007275"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"somatic sex determination","termid":"GO:0018993"}


id: PBO:0047334
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"fibrillarin like 1","termid":"PBO:0047334"}


id: PBO:0005847
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nucleolar RNA-binding protein NIFK (predicted)","termid":"PBO:0005847"}


id: PBO:0059272
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial ribosomal protein L35 pseudogene 1","termid":"PBO:0059272"}


id: PBO:0058005
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 3928","termid":"PBO:0058005"}


id: GO:0034671
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The series of molecular signals generated as a consequence of a retinoic acid receptor binding to one of its physiological ligands that results in the spatial identity of regions along the anterior-posterior axis of the pronephros.","definition_xrefs":["GOC:mh"],"direct_ancestors":[{"relation_name":"is_a","term_name":"retinoic acid receptor signaling pathway","termid":"GO:0048384"},{"relation_name":"part_of","term_name":"anterior/posterior pattern specification involved in pronephros development","termid":"GO:0034672"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"retinoic acid receptor signaling pathway involved in pronephros anterior/posterior pattern specification","synonyms":[{"name":"retinoic acid receptor signaling pathway involved in pronephric kidney anterior/posterior pattern specification","type":"exact"},{"name":"retinoic acid receptor signalling pathway involved in pronephros anterior-posterior patterning","type":"exact"}],"termid":"GO:0034671"}


id: PBO:0032742
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"D-Tyr-tRNA deacylase Dtd1 (predicted)","termid":"PBO:0032742"}


id: PBO:0063903
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PIGY divergent transcript","termid":"PBO:0063903"}


id: PBO:0060433
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NACA family member 4, pseudogene","termid":"PBO:0060433"}


id: PATO:0000166
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0000166 absolute time (obsolete PATO:0000166)","termid":"PATO:0000166"}


id: PBO:0068914
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 157, pseudogene","termid":"PBO:0068914"}


id: GO:0007203
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. (Was not defined before being made obsolete).","definition_xrefs":["GOC:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete phosphatidylinositol-4,5-bisphosphate hydrolysis (obsolete GO:0007203)","synonyms":[{"name":"phosphatidylinositol-4,5-bisphosphate hydrolysis","type":"exact"}],"termid":"GO:0007203"}


id: PBO:0060193
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mucin 13, cell surface associated","termid":"PBO:0060193"}


id: GO:0110126
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process of loading solutes into the sieve tube or companion cell of the phloem for long distance transport from source to sink.","definition_xrefs":["GOC:lr","PMID:19025382"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phloem transport","termid":"GO:0010233"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0008150","GO:0006810","GO:0051179"],"is_obsolete":false,"name":"phloem loading","termid":"GO:0110126"}


id: PBO:0004826
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"U2 snRNP-associated protein Lea1 (predicted)","termid":"PBO:0004826"}


id: PBO:0085140
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Nucleolar protein similar to large ribosomal subunit L7 proteins; constituent of 66S pre-ribosomal particles; plays an essential role in processing of precursors to the large ribosomal subunit RNAs; binds junction of ITS2 and ITS2-proximal stem between the 3' end of 5.8S rRNA and the 5' end of 25S rRNA","termid":"PBO:0085140"}


id: GO:0090616
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process involved in forming the mature 3' end of an mRNA molecule that derives from the mitochondrial genome.","definition_xrefs":["GOC:tb","PMID:25181358"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mitochondrial RNA 3'-end processing","termid":"GO:0000965"},{"relation_name":"is_a","term_name":"mRNA 3'-end processing","termid":"GO:0031124"},{"relation_name":"is_a","term_name":"mitochondrial mRNA processing","termid":"GO:0090615"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0140053"},{"rel_name":"is_a","termid":"GO:0016071"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0010467"},{"rel_name":"part_of","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0016071","GO:0008150","GO:0010467","GO:0140053"],"is_obsolete":false,"name":"mitochondrial mRNA 3'-end processing","termid":"GO:0090616"}


id: GO:0000389
data:
  {"annotated_genes":["SJAG_00225","SJAG_01214"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[72888,96715],"is_not":false,"summary":null,"term":"GO:0000389"}]},"cv_name":"biological_process","definition":"Recognition of the intron 3'-splice site by components of the assembling U2- or U12-type spliceosome.","definition_xrefs":["ISBN:0879695897","GOC:krc"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mRNA splice site recognition","termid":"GO:0006376"}],"gene_count":2,"genes_by_uniquename":{"SJAG_00225":null,"SJAG_01214":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0065003"},{"rel_name":"is_a","termid":"GO:0065003"},{"rel_name":"part_of","termid":"GO:0016071"},{"rel_name":"part_of","termid":"GO:0044085"},{"rel_name":"part_of","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0010467","GO:0008150","GO:0065003","GO:0016071","GO:0044085"],"is_obsolete":false,"name":"mRNA 3'-splice site recognition","references_by_uniquename":{"GO_REF:0000107":null,"PMID:21873635":null},"secondary_identifiers":["GO:0000382","GO:0000383"],"synonyms":[{"name":"U12-type nuclear mRNA 3'-splice site recognition","type":"narrow"},{"name":"U2-type nuclear mRNA 3'-splice site recognition","type":"narrow"},{"name":"nuclear mRNA 3'-splice site recognition","type":"exact"}],"termid":"GO:0000389","terms_by_termid":{"GO:0000389":null}}


id: PBO:0044651
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dynactin subunit 2","termid":"PBO:0044651"}


id: GO:2000122
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of stomatal complex development.","definition_xrefs":["GOC:obol"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of post-embryonic development","termid":"GO:0048581"},{"relation_name":"is_a","term_name":"regulation of stomatal complex development","termid":"GO:2000038"},{"relation_name":"negatively_regulates","term_name":"stomatal complex development","termid":"GO:0010374"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of stomatal complex development","termid":"GO:2000122"}


id: PBO:0055390
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2820","termid":"PBO:0055390"}


id: GO:0140787
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the active transport of a phosphate ion across a membrane by a mechanism involving conformational change, where energy for active transport is derived from membrane potential if the solute is charged.","definition_xrefs":["PMID:29642010"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phosphate ion transmembrane transporter activity","termid":"GO:0015114"},{"relation_name":"is_a","term_name":"membrane potential driven uniporter activity","termid":"GO:0022810"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005215"}],"interesting_parent_ids":["GO:0022857","GO:0005215","GO:0003674"],"is_obsolete":false,"name":"phosphate ion uniporter activity","termid":"GO:0140787"}


id: GO:0009377
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the ATP-dependent hydrolysis of peptide bonds in substrates including E. coli SulA and misfolded proteins.","definition_xrefs":["GOC:mah","PMID:10368141"],"gene_count":0,"genotype_count":0,"name":"obsolete HslUV protease activity (obsolete GO:0009377)","synonyms":[{"name":"HslUV protease activity","type":"exact"}],"termid":"GO:0009377"}


id: GO:0004337
data:
  {"annotated_genes":["SJAG_03352","SJAG_00580"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[70851,77425],"is_not":false,"summary":null,"term":"GO:0004337"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: geranyl diphosphate + isopentenyl diphosphate = 2-trans,6-trans-farnesyl diphosphate + diphosphate.","definition_xrefs":["EC:2.5.1.10","RHEA:19361"],"direct_ancestors":[{"relation_name":"is_a","term_name":"prenyltransferase activity","termid":"GO:0004659"}],"gene_count":2,"genes_by_uniquename":{"SJAG_00580":null,"SJAG_03352":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016765"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016740"}],"interesting_parent_ids":["GO:0003674","GO:0016765","GO:0003824","GO:0016740"],"is_obsolete":false,"name":"geranyltranstransferase activity","references_by_uniquename":{"PMID:21873635":null},"secondary_identifiers":["Reactome:R-HSA-8870469","Reactome:R-HSA-191303","MetaCyc:FPPSYN-RXN","KEGG_REACTION:R02003","Reactome:R-HSA-9717830"],"synonyms":[{"name":"FPP synthetase activity","type":"related"},{"name":"farnesyl diphosphate synthetase activity","type":"related"},{"name":"farnesyl pyrophosphate synthetase activity","type":"exact"},{"name":"farnesyl-diphosphate synthase activity","type":"exact"},{"name":"farnesylpyrophosphate synthetase activity","type":"related"},{"name":"geranyl transferase I","type":"related"},{"name":"geranyl-diphosphate:isopentenyl-diphosphate geranyltranstransferase activity","type":"related"},{"name":"geranyltransferase activity","type":"related"}],"termid":"GO:0004337","terms_by_termid":{"GO:0004337":null}}


id: PBO:0074154
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"solute carrier family 35 member E2B","termid":"PBO:0074154"}


id: PBO:0049841
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"HEAT repeat containing 4","termid":"PBO:0049841"}


id: PBO:0050603
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"hydroxysteroid 11-beta dehydrogenase 1 like","termid":"PBO:0050603"}


id: PBO:0049252
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"growth hormone regulated TBC protein 1","termid":"PBO:0049252"}


id: PBO:0026718
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_histone_H3-K4_dimethylation","termid":"PBO:0026718"}


id: PBO:0085090
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Nuclear exosome-associated nucleic acid binding protein; involved in RNA processing, surveillance, degradation, tethering, and export; forms a stable heterodimer with Rrp6p and regulates its exonucleolytic activity; rapidly degraded by the proteasome in the absence of Rrp6p; homolog of mammalian nuclear matrix protein C1D involved in regulation of DNA repair and recombination","termid":"PBO:0085090"}


id: PBO:0059982
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MT-ND4L pseudogene 2","termid":"PBO:0059982"}


id: FYPO:0002152
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"OBSOLETE. A cell population phenotype in which all cells in the population are inviable and have a lower volume than normal in the vegetative growth phase of the life cycle.","definition_xrefs":["PomBase:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete inviable small vegetative cell population (obsolete FYPO:0002152)","termid":"FYPO:0002152"}


id: GO:0072427
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The series of events in which information about damage to DNA is received and converted into a molecular signal, contributing to an intra-S DNA damage checkpoint.","definition_xrefs":["GOC:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete detection of DNA damage stimulus involved in intra-S DNA damage checkpoint (obsolete GO:0072427)","synonyms":[{"name":"intra-S DNA damage checkpoint sensor mechanism","type":"related"},{"name":"intra-S DNA damage checkpoint sensor process","type":"related"},{"name":"sensing involved in intra-S DNA damage checkpoint","type":"related"}],"termid":"GO:0072427"}


id: PBO:0038601
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ArfGAP with coiled-coil, ankyrin repeat and PH domains 2","termid":"PBO:0038601"}


id: PBO:0110986
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cis-acting regulatory lncRNA prt2, pho84 repressing","termid":"PBO:0110986"}


id: PBO:0001145
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase family or domain","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"kinesin Kar3 subfamily","termid":"PBO:0001145"}


id: FYPO:0001841
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which the observed rate of adenylyl cyclase activity is abnormal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal catalytic activity","termid":"FYPO:0000661"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000661"},{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000654"},{"rel_name":"is_a","termid":"FYPO:0000707"}],"interesting_parent_ids":["FYPO:0000652","FYPO:0001985","FYPO:0000654","FYPO:0000707","FYPO:0000661"],"is_obsolete":false,"name":"abnormal adenylyl cyclase activity","synonyms":[{"name":"abnormal adenylate cyclase activity","type":"exact"}],"termid":"FYPO:0001841"}


id: SO:0000637
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A plasmid that is engineered.","definition_xrefs":["SO:xp"],"direct_ancestors":[{"relation_name":"has_quality","term_name":"engineered","termid":"SO:0000783"},{"relation_name":"is_a","term_name":"plasmid","termid":"SO:0000155"},{"relation_name":"is_a","term_name":"engineered_region","termid":"SO:0000804"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"engineered_plasmid","synonyms":[{"name":"engineered plasmid","type":"exact"},{"name":"engineered plasmid gene","type":"related"}],"termid":"SO:0000637"}


id: PBO:0076649
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"T-box transcription factor 4","termid":"PBO:0076649"}


id: PBO:0079269
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tetratricopeptide repeat domain 39B","termid":"PBO:0079269"}


id: PBO:0071490
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L32 pseudogene 31","termid":"PBO:0071490"}


id: PBO:0048481
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glucosaminyl (N-acetyl) transferase 3, mucin type","termid":"PBO:0048481"}


id: PBO:0061995
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 2 subfamily E member 1 pseudogene","termid":"PBO:0061995"}


id: PR:O60143
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- rpl701 gene.","definition_xrefs":["UniProtKB:O60143","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"60S ribosomal protein L7-C (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC18H10.12c","synonyms":[{"name":"Spom972h-rpl701","type":"exact"}],"termid":"PR:O60143"}


id: PBO:0045252
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dynein axonemal light chain 4","termid":"PBO:0045252"}


id: PATO:0002242
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A physical quality inhering in a bearer by virtue of the bearer's rate of change of the position.","direct_ancestors":[{"relation_name":"is_a","term_name":"movement quality","termid":"PATO:0001906"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"velocity","termid":"PATO:0002242"}


id: PBO:0062043
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 2 subfamily T member 27","termid":"PBO:0062043"}


id: GO:1904579
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a thapsigargin stimulus.","definition_xrefs":["PMID:23106379","GO_REF:0000071","GOC:TermGenie"],"gene_count":0,"genotype_count":0,"name":"obsolete cellular response to thapsigargin (obsolete GO:1904579)","termid":"GO:1904579"}


id: GO:0120308
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The aggregation, arrangement and bonding together of a set of components to form an axonemal outer doublet, a part of an axoneme consisting of a doublet microtubule.","definition_xrefs":["GOC:krc","PMID:16278296","GOC:ach"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular component assembly","termid":"GO:0022607"},{"relation_name":"part_of","term_name":"axoneme assembly","termid":"GO:0035082"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0007010"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0000226"},{"rel_name":"part_of","termid":"GO:0044085"}],"interesting_parent_ids":["GO:0044085","GO:0008150","GO:0007010","GO:0000226"],"is_obsolete":false,"name":"axonemal outer doublet assembly","synonyms":[{"name":"axonemal outer doublet biogenesis","type":"exact"},{"name":"axonemal outer doublet formation","type":"exact"},{"name":"axonemal outer doublet morphogenesis","type":"exact"},{"name":"axoneme outer doublet assembly","type":"exact"},{"name":"outer doublet assembly","type":"broad"},{"name":"outer-doublet microtubule assembly","type":"broad"}],"termid":"GO:0120308"}


id: PBO:0048774
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"GDP-mannose pyrophosphorylase A","termid":"PBO:0048774"}


id: PBO:0054798
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2211","termid":"PBO:0054798"}


id: PBO:0043452
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"calponin 3","termid":"PBO:0043452"}


id: PBO:0003598
data:
  {"annotation_feature_type":"gene","cv_name":"EC numbers","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"6.1.1.5","termid":"PBO:0003598"}


id: PBO:0030034
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abolished_leptomycin_B_binding","termid":"PBO:0030034"}


id: PBO:0001104
data:
  {"annotation_feature_type":"gene","cv_name":"gene_ex","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transcriptionally regulated by ammonia","termid":"PBO:0001104"}


id: GO:1901212
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of cardiac chamber formation.","definition_xrefs":["GOC:BHF","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of cardiac chamber formation","termid":"GO:1901210"},{"relation_name":"is_a","term_name":"positive regulation of cardiac chamber morphogenesis","termid":"GO:1901221"},{"relation_name":"positively_regulates","term_name":"cardiac chamber formation","termid":"GO:0003207"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of cardiac chamber formation","synonyms":[{"name":"activation of cardiac chamber formation","type":"narrow"},{"name":"activation of heart chamber formation","type":"exact"},{"name":"positive regulation of heart chamber formation","type":"exact"},{"name":"up regulation of cardiac chamber formation","type":"exact"},{"name":"up regulation of heart chamber formation","type":"exact"},{"name":"up-regulation of cardiac chamber formation","type":"exact"},{"name":"up-regulation of heart chamber formation","type":"exact"},{"name":"upregulation of cardiac chamber formation","type":"exact"},{"name":"upregulation of heart chamber formation","type":"exact"}],"termid":"GO:1901212"}


id: GO:0008018
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. (Was not defined before being made obsolete).","definition_xrefs":["GOC:ai"],"gene_count":0,"genotype_count":0,"name":"obsolete structural protein of chorion (sensu Drosophila) (obsolete GO:0008018)","synonyms":[{"name":"structural protein of chorion (sensu Drosophila)","type":"exact"}],"termid":"GO:0008018"}


id: PBO:0091881
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"class I glutamine amidotransferase family protein","termid":"PBO:0091881"}


id: FYPO:0004153
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell population phenotype that reflects increased occurrence of flocculation when the population is in stationary phase. Flocculation is the non-sexual aggregation of single cells.","definition_xrefs":["PomBase:mah","PMID:15047724"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased flocculation","termid":"FYPO:0000155"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000003"}],"interesting_parent_ids":["FYPO:0000003","FYPO:0001985","FYPO:0005447"],"is_obsolete":false,"name":"increased flocculation in stationary phase","termid":"FYPO:0004153"}


id: PR:O74794
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- cyc3 gene.","definition_xrefs":["PRO:DNx","UniProtKB:O74794"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cytochrome c heme lyase (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC26H8.12","synonyms":[{"name":"CCHL (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-cyc3","type":"exact"},{"name":"holocytochrome-c synthase (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:O74794"}


id: PBO:0068313
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNF14 pseudogene 1","termid":"PBO:0068313"}


id: GO:0090673
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The binding of an endothelial cell to the extracellular matrix via adhesion molecules.","definition_xrefs":["GOC:BHF_miRNA","GOC:BHF","GOC:bc","PMID:19460962"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell-matrix adhesion","termid":"GO:0007160"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0007155"}],"interesting_parent_ids":["GO:0008150","GO:0007155"],"is_obsolete":false,"name":"endothelial cell-matrix adhesion","termid":"GO:0090673"}


id: GO:1903938
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an acrylamide stimulus.","definition_xrefs":["PMID:16292499","GO_REF:0000071","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular response to organonitrogen compound","termid":"GO:0071417"},{"relation_name":"is_a","term_name":"cellular response to oxygen-containing compound","termid":"GO:1901701"},{"relation_name":"is_a","term_name":"response to acrylamide","termid":"GO:1903937"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cellular response to acrylamide","termid":"GO:1903938"}


id: PBO:0003696
data:
  {"annotation_feature_type":"gene","cv_name":"misc","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"focus formation at DNA damage sites, Sfr1-dependent","termid":"PBO:0003696"}


id: PBO:0075364
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SRY-box transcription factor 4","termid":"PBO:0075364"}


id: PR:P21534
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A cytochrome c oxidase subunit 2 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PANTHER:PTHR22888:SF0","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cytochrome c oxidase subunit 2 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPMIT.11","secondary_identifiers":["UniProtKB:P21534"],"synonyms":[{"name":"SPMIT.11","type":"related"},{"name":"Spom972h-MT-CO2","type":"exact"},{"name":"cytochrome c oxidase polypeptide II (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:P21534"}


id: PBO:0083615
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Dynein intermediate chain, microtubule motor protein; required for intracellular transport and cell division; acts in cytoplasmic dynein pathway; forms complex with dynein light chain Dyn2p that promotes Dyn1p homodimerization and potentiates motor processivity; Dyn2p-Pac11p complex is also important for interaction of dynein motor complex with dynactin complex; forms cortical cytoplasmic microtubule capture site with Num1p; essential in the absence of CIN8","termid":"PBO:0083615"}


id: PBO:0081695
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein 618","termid":"PBO:0081695"}


id: PBO:0005850
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SPX/EXS domain protein (predicted)","termid":"PBO:0005850"}


id: PBO:0050653
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"heat shock protein 90 alpha family class B member 3, pseudogene","termid":"PBO:0050653"}


id: GO:0102785
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: violaxanthin + 2 O2 = 2 5,6-epoxy-3-hydroxy-9-apo-beta-caroten-9-one + 4,9-dimethyldodeca-2,4,6,8,10-pentaenedial.","definition_xrefs":["PMID:11316814","GOC:pz"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen","termid":"GO:0016702"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016491"],"is_obsolete":false,"name":"violaxanthin oxygenase activity","secondary_identifiers":["MetaCyc:RXN-7886"],"termid":"GO:0102785"}


id: SO:0002333
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A stop codon with the DNA sequence TAG.","direct_ancestors":[{"relation_name":"is_a","term_name":"stop_codon","termid":"SO:0000319"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"amber_stop_codon","synonyms":[{"name":"Amber stop codon","type":"exact"}],"termid":"SO:0002333"}


id: FYPO:0006037
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A physical cellular phenotype observed in the vegetative growth phase of the life cycle in which cells contain fewer half-mer polysomes in the cytosol than normal. A half-mer polysome is a complex consisting of an mRNA bound to a single small ribosomal subunit, followed by one or more complete bound ribosomes.","definition_xrefs":["PMID:26122634","PMID:18611858","PMID:19806183","PMID:10462529","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"altered level of macromolecular complex during vegetative growth","termid":"FYPO:0003684"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000002"],"is_obsolete":false,"name":"decreased cytosolic half-mer polysome level","synonyms":[{"name":"cytosolic half-mer polysomes present at decreased level","type":"exact"},{"name":"decreased cytosolic half-mer polysome level during mitotic cell cycle","type":"related"},{"name":"decreased cytosolic half-mer polysome level during vegetative growth","type":"exact"},{"name":"decreased cytosolic halfmer polysome level","type":"exact"},{"name":"decreased level of cytosolic half-mer polysomes","type":"related"},{"name":"reduced cytosolic half-mer polysome level","type":"exact"}],"termid":"FYPO:0006037"}


id: PBO:0043631
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"COPB2 divergent transcript","termid":"PBO:0043631"}


id: GO:0032085
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of a type II restriction endodeoxyribonuclease activity.","definition_xrefs":["GOC:dph","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of restriction endodeoxyribonuclease activity","termid":"GO:0032072"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0006259"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0006259"],"is_obsolete":false,"name":"regulation of type II site-specific deoxyribonuclease activity","synonyms":[{"name":"regulation of type II restriction endodeoxyribonuclease activity","type":"exact"},{"name":"type II restriction endodeoxyribonuclease regulator","type":"related"},{"name":"type II restriction enzyme regulator","type":"related"}],"termid":"GO:0032085"}


id: GO:0001815
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of antibody-dependent cellular cytotoxicity.","definition_xrefs":["GOC:add","ISBN:0781735149"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of type IIa hypersensitivity","termid":"GO:0001798"},{"relation_name":"is_a","term_name":"regulation of antibody-dependent cellular cytotoxicity","termid":"GO:0001813"},{"relation_name":"is_a","term_name":"positive regulation of leukocyte mediated cytotoxicity","termid":"GO:0001912"},{"relation_name":"positively_regulates","term_name":"antibody-dependent cellular cytotoxicity","termid":"GO:0001788"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of antibody-dependent cellular cytotoxicity","synonyms":[{"name":"activation of antibody-dependent cellular cytotoxicity","type":"narrow"},{"name":"positive regulation of antibody dependent cell death","type":"exact"},{"name":"positive regulation of antibody dependent cell killing","type":"exact"},{"name":"positive regulation of antibody-dependent cell death","type":"exact"},{"name":"positive regulation of antibody-dependent cell killing","type":"exact"},{"name":"stimulation of antibody-dependent cellular cytotoxicity","type":"narrow"},{"name":"up regulation of antibody-dependent cellular cytotoxicity","type":"exact"},{"name":"up-regulation of antibody-dependent cellular cytotoxicity","type":"exact"},{"name":"upregulation of antibody-dependent cellular cytotoxicity","type":"exact"}],"termid":"GO:0001815"}


id: PBO:0058100
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 4315-2","termid":"PBO:0058100"}


id: GO:0000094
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. (Was not defined before being made obsolete).","definition_xrefs":["GOC:go_curators"],"gene_count":0,"genotype_count":0,"name":"obsolete septin assembly and septum formation (obsolete GO:0000094)","synonyms":[{"name":"septin assembly and septum formation","type":"exact"}],"termid":"GO:0000094"}


id: PBO:0040580
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"BAALC antisense RNA 2","termid":"PBO:0040580"}


id: PBO:0079457
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"terminal uridylyl transferase 4","termid":"PBO:0079457"}


id: PBO:0044476
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cytochrome P450 family 19 subfamily A member 1","termid":"PBO:0044476"}


id: PBO:0004628
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribonucleotide reductase small subunit Suc22","termid":"PBO:0004628"}


id: GO:0038195
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The series of molecular signals initiated by urokinase plasminogen activator binding to its receptor on the surface of a target cell, and ending with the regulation of a downstream cellular process, e.g. transcription.","definition_xrefs":["GOC:gap","PMID:9417082"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell surface receptor signaling pathway","termid":"GO:0007166"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"urokinase plasminogen activator signaling pathway","synonyms":[{"name":"uPA signaling pathway","type":"exact"}],"termid":"GO:0038195"}


id: FYPO:0005383
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which the duration of the first meiotic nuclear division is normal (i.e. indistinguishable from wild type).","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal meiosis I","termid":"FYPO:0003563"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000257"}],"interesting_parent_ids":["FYPO:0000257","FYPO:0000002"],"is_obsolete":false,"name":"normal duration of meiosis I","synonyms":[{"name":"normal duration of first meiotic nuclear division","type":"exact"}],"termid":"FYPO:0005383"}


id: GO:1990178
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A protein-DNA complex that consists of HU heterodimers (an alpha and a beta chain) assembled into octamers along DNA. HU binds to double-stranded DNA in a structure- and sequence-specific manner and bends the DNA into a nucleosome-like structure.","definition_xrefs":["GOC:bhm","PMID:17360520"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein-DNA complex","termid":"GO:0032993"},{"relation_name":"is_a","term_name":"DNA bending complex","termid":"GO:1990104"},{"relation_name":"part_of","term_name":"bacterial nucleoid","termid":"GO:0043590"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0032991","GO:0005575"],"is_obsolete":false,"name":"HU-DNA complex","synonyms":[{"name":"HU complex","type":"broad"}],"termid":"GO:1990178"}


id: GO:0047872
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: palmitoyl-CoA + dolichol = CoA + dolichyl palmitate.","definition_xrefs":["MetaCyc:DOLICHOL-O-ACYLTRANSFERASE-RXN","EC:2.3.1.123"],"direct_ancestors":[{"relation_name":"is_a","term_name":"O-acyltransferase activity","termid":"GO:0008374"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016746"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0016746","GO:0016740","GO:0003824"],"is_obsolete":false,"name":"dolichol O-acyltransferase activity","secondary_identifiers":["RHEA:16685"],"synonyms":[{"name":"acyl-CoA:dolichol acyltransferase activity","type":"related"},{"name":"palmitoyl-CoA:dolichol O-palmitoyltransferase activity","type":"related"}],"termid":"GO:0047872"}


id: GO:0047820
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: D-glutamate = 5-oxo-D-proline + H2O.","definition_xrefs":["EC:4.2.1.48","RHEA:22360"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cyclase activity","termid":"GO:0009975"},{"relation_name":"is_a","term_name":"hydro-lyase activity","termid":"GO:0016836"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016829"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0009975"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016829","GO:0009975"],"is_obsolete":false,"name":"D-glutamate cyclase activity","secondary_identifiers":["MetaCyc:D-GLUTAMATE-CYCLASE-RXN","KEGG_REACTION:R01583"],"synonyms":[{"name":"D-glutamate hydro-lyase (cyclizing)","type":"related"},{"name":"D-glutamate hydro-lyase (cyclizing; 5-oxo-D-proline-forming)","type":"related"}],"termid":"GO:0047820"}


id: PBO:0085339
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Phosphoinositide binding protein; required for vesicle formation in autophagy and the cytoplasm-to-vacuole targeting (CVT) pathway; binds PtdIns(3,5)P2, PI3P and PI4P; WD-40 repeat containing protein and PROPPIN family member; relocalizes from the vacuole to cytoplasm upon DNA replication stress; mammalian homologs include: WIPI1, WIPI2, WIPI3 and WIPI4/WDR45; mutations in human WDR45 cause static encephalopathy of childhood with neurodegeneration in adulthood (SENDA)","termid":"PBO:0085339"}


id: GO:2000475
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of opioid receptor signaling pathway.","definition_xrefs":["GOC:obol"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of G protein-coupled receptor signaling pathway","termid":"GO:0045744"},{"relation_name":"is_a","term_name":"regulation of opioid receptor signaling pathway","termid":"GO:2000474"},{"relation_name":"negatively_regulates","term_name":"G protein-coupled opioid receptor signaling pathway","termid":"GO:0038003"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0023052"},{"rel_name":"negatively_regulates","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"negative regulation of opioid receptor signaling pathway","synonyms":[{"name":"negative regulation of opioid receptor signalling pathway","type":"exact"}],"termid":"GO:2000475"}


id: GO:0021553
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of the olfactory nerve over time, from its formation to the mature structure. The olfactory nerve is a collection of sensory nerve rootlets that extend down from the olfactory bulb to the olfactory mucosa of the upper parts of the nasal cavity. This nerve conducts odor information to the brainstem.","definition_xrefs":["GO_REF:0000021","GOC:cls","GOC:jid","GOC:dph","ISBN:0838580343","GOC:dgh"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cranial nerve development","termid":"GO:0021545"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"olfactory nerve development","synonyms":[{"name":"CN 1 development","type":"related"},{"name":"cranial nerve 1 development","type":"exact"},{"name":"cranial nerve I development","type":"exact"}],"termid":"GO:0021553"}


id: PBO:0002269
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Hsp90 chaperone","termid":"PBO:0002269"}


id: PBO:0041409
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chromosome 6 open reading frame 163","termid":"PBO:0041409"}


id: SO:0000520
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one V-gene, one VDJ-gene and one C-gene.","direct_ancestors":[{"relation_name":"has_part","term_name":"V_gene_segment","termid":"SO:0000466"},{"relation_name":"has_part","term_name":"C_gene_segment","termid":"SO:0000478"},{"relation_name":"has_part","term_name":"VDJ_gene_segment","termid":"SO:0000574"},{"relation_name":"is_a","term_name":"vertebrate_immunoglobulin_T_cell_receptor_rearranged_gene_cluster","termid":"SO:0000938"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"V_VDJ_C_cluster","synonyms":[{"name":"V VDJ C cluster","type":"exact"},{"name":"V-(VDJ)-C-CLUSTER","type":"exact"}],"termid":"SO:0000520"}


id: PBO:0046220
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"elongin C pseudogene 13","termid":"PBO:0046220"}


id: PBO:0054220
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1601","termid":"PBO:0054220"}


id: GO:0140860
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: a (3R,4R)-4,2'-dihydroxyisoflavan + NADP+ = a (3R)-2'-hydroxyisoflavanone + H+ + NADPH.","definition_xrefs":["RHEA:56284","PMID:7625843"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor","termid":"GO:0016616"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016491","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"(3R)-2'-hydroxyisoflavanone reductase activity","synonyms":[{"name":"vestitone reductase activity","type":"narrow"}],"termid":"GO:0140860"}


id: PBO:0046353
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ectonucleotide pyrophosphatase/phosphodiesterase 7 pseudogene 11","termid":"PBO:0046353"}


id: PBO:0083453
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Dubious open reading frame; unlikely to encode a functional protein, based on available experimental and comparative sequence data; partially overlaps the verified gene CYC8","termid":"PBO:0083453"}


id: PBO:0073791
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"solute carrier family 5 member 11","termid":"PBO:0073791"}


id: PBO:0090454
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"serine/threonine protein kinase (CK1 family) Cki2","termid":"PBO:0090454"}


id: GO:0045016
data:
  {"annotated_genes":["SJAG_01639","SJAG_02484"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[76440],"is_not":false,"summary":null,"term":"GO:0045016"},{"annotations":[75009],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1990616"}]},"cv_name":"biological_process","definition":"The process in which a magnesium ion (Mg2+) is transported across a mitochondrial membrane, into or out of the mitochondrion.","definition_xrefs":["GOC:ai","PMID:11254124"],"direct_ancestors":[{"relation_name":"is_a","term_name":"magnesium ion transmembrane transport","termid":"GO:1903830"},{"relation_name":"is_a","term_name":"mitochondrial transmembrane transport","termid":"GO:1990542"}],"gene_count":2,"genes_by_uniquename":{"SJAG_01639":null,"SJAG_02484":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0055085"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0051179","GO:0006810","GO:0008150","GO:0055085"],"is_obsolete":false,"name":"mitochondrial magnesium ion transmembrane transport","references_by_uniquename":{"PMID:21873635":null},"secondary_identifiers":["GO:1990614"],"synonyms":[{"name":"mitochondrial magnesium ion transport","type":"related"}],"termid":"GO:0045016","terms_by_termid":{"GO:0045016":null,"GO:1990616":null}}


id: GO:1900381
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of asperthecin biosynthetic process.","definition_xrefs":["GOC:di","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of cellular biosynthetic process","termid":"GO:0031328"},{"relation_name":"is_a","term_name":"positive regulation of small molecule metabolic process","termid":"GO:0062013"},{"relation_name":"is_a","term_name":"positive regulation of secondary metabolite biosynthetic process","termid":"GO:1900378"},{"relation_name":"is_a","term_name":"regulation of asperthecin biosynthetic process","termid":"GO:1900379"},{"relation_name":"positively_regulates","term_name":"asperthecin biosynthetic process","termid":"GO:0036184"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"positively_regulates","termid":"GO:0044281"},{"rel_name":"positively_regulates","termid":"GO:0019748"},{"rel_name":"regulates","termid":"GO:0044281"},{"rel_name":"regulates","termid":"GO:0019748"}],"interesting_parent_ids":["GO:0044281","GO:0008150","GO:0019748"],"is_obsolete":false,"name":"positive regulation of asperthecin biosynthetic process","synonyms":[{"name":"activation of asperthecin biosynthesis","type":"exact"},{"name":"activation of asperthecin biosynthetic process","type":"narrow"},{"name":"activation of asperthecin formation","type":"exact"},{"name":"activation of asperthecin synthesis","type":"exact"},{"name":"positive regulation of asperthecin biosynthesis","type":"exact"},{"name":"positive regulation of asperthecin formation","type":"exact"},{"name":"positive regulation of asperthecin synthesis","type":"exact"},{"name":"up regulation of asperthecin biosynthesis","type":"exact"},{"name":"up regulation of asperthecin biosynthetic process","type":"exact"},{"name":"up regulation of asperthecin formation","type":"exact"},{"name":"up regulation of asperthecin synthesis","type":"exact"},{"name":"up-regulation of asperthecin biosynthesis","type":"exact"},{"name":"up-regulation of asperthecin biosynthetic process","type":"exact"},{"name":"up-regulation of asperthecin formation","type":"exact"},{"name":"up-regulation of asperthecin synthesis","type":"exact"},{"name":"upregulation of asperthecin biosynthesis","type":"exact"},{"name":"upregulation of asperthecin biosynthetic process","type":"exact"},{"name":"upregulation of asperthecin formation","type":"exact"},{"name":"upregulation of asperthecin synthesis","type":"exact"}],"termid":"GO:1900381"}


id: FYPO:0004528
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A metabolism phenotype observed in the vegetative growth phase of the life cycle in which mitochondrial translation is abnormal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mitochondrial translation phenotype","termid":"FYPO:0000632"},{"relation_name":"is_a","term_name":"abnormal translation","termid":"FYPO:0001797"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0006551"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0005447","FYPO:0001320","FYPO:0000002","FYPO:0006551"],"is_obsolete":false,"name":"abnormal mitochondrial translation","synonyms":[{"name":"abnormal mitochondrial protein biosynthesis","type":"exact"},{"name":"abnormal mitochondrial protein synthesis","type":"exact"},{"name":"abnormal mitochondrial translation during mitotic cell cycle","type":"related"},{"name":"abnormal mitochondrial translation during vegetative growth","type":"exact"}],"termid":"FYPO:0004528"}


id: PBO:0088533
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"60S ribosomal protein L7a/L8","termid":"PBO:0088533"}


id: PBO:0080945
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger BED-type containing 1","termid":"PBO:0080945"}


id: PBO:0065254
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"proline rich 20G","termid":"PBO:0065254"}


id: GO:0030526
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The heterodimeric receptor for granulocyte macrophage colony-stimulating factor.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"plasma membrane signaling receptor complex","termid":"GO:0098802"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005886"},{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0032991","GO:0005886","GO:0005575"],"is_obsolete":false,"name":"granulocyte macrophage colony-stimulating factor receptor complex","synonyms":[{"name":"GM-CSF receptor complex","type":"exact"},{"name":"granulocyte macrophage colony stimulating factor receptor complex","type":"exact"}],"termid":"GO:0030526"}


id: PR:O94498
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPBC18E5.08 gene.","definition_xrefs":["UniProtKB:O94498","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized N-acetyltransferase C18E5.08 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC18E5.08","synonyms":[{"name":"Spom972h-SPBC18E5.08","type":"exact"}],"termid":"PR:O94498"}


id: PBO:0075607
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SPON1 antisense RNA 1","termid":"PBO:0075607"}


id: GO:0000139
data:
  {"annotated_genes":["SJAG_03268","SJAG_00816","SJAG_04340","SJAG_04095","SJAG_03302","SJAG_01508","SJAG_01027","SJAG_01276","SJAG_03889","SJAG_01264","SJAG_04714","SJAG_01633","SJAG_04770","SJAG_03499","SJAG_05013","SJAG_02519","SJAG_04023","SJAG_06588","SJAG_02902","SJAG_01206","SJAG_02706","SJAG_04162","SJAG_01972","SJAG_00328","SJAG_01021","SJAG_02316","SJAG_02399","SJAG_04406","SJAG_01112","SJAG_02996","SJAG_05286","SJAG_00143","SJAG_02910","SJAG_03555","SJAG_01133","SJAG_00183","SJAG_01960","SJAG_03552","SJAG_03850","SJAG_00276","SJAG_04592","SJAG_00506","SJAG_04697","SJAG_00598","SJAG_01409","SJAG_03158","SJAG_04739","SJAG_03082","SJAG_04474","SJAG_01642","SJAG_00339","SJAG_05209","SJAG_00785","SJAG_00171","SJAG_03871","SJAG_04401","SJAG_04906","SJAG_02640","SJAG_03933","SJAG_00261","SJAG_03670","SJAG_01516","SJAG_04112","SJAG_05736","SJAG_03528","SJAG_00880","SJAG_04402","SJAG_02839","SJAG_04668","SJAG_00525","SJAG_03790","SJAG_01177","SJAG_04018","SJAG_04391","SJAG_00669","SJAG_00557","SJAG_00804","SJAG_03015"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[58189,58574,59396,60971,66179,66544,66835,71279,71622,71705,73521,74799,74954,75081,75412,75998,76239,77098,77308,77683,77729,78488,84114,84188,84701,84711,84871,86129,87163,88013,88505,88709,88744,88937,89978,90707,91114,91847,91962,92446,93029,93621,94954,95660,96228,99717,99910,99995,100195,100431,101128,101323,101349,102650,102705,103194,103747,104287,104326,104949,105092,105139,106016,106195,107487,107600,107897,110702,110743,112007,112708,113422,113486],"is_not":false,"summary":null,"term":"GO:0000139"},{"annotations":[70228],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0000136"},{"annotations":[100320,93415,113115,83264],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0140497"}]},"cv_name":"cellular_component","definition":"The lipid bilayer surrounding any of the compartments of the Golgi apparatus.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"bounding membrane of organelle","termid":"GO:0098588"},{"relation_name":"part_of","term_name":"Golgi apparatus","termid":"GO:0005794"}],"gene_count":78,"genes_by_uniquename":{"SJAG_00143":null,"SJAG_00171":null,"SJAG_00183":null,"SJAG_00261":null,"SJAG_00276":null,"SJAG_00328":null,"SJAG_00339":null,"SJAG_00506":null,"SJAG_00525":null,"SJAG_00557":null,"SJAG_00598":null,"SJAG_00669":null,"SJAG_00785":null,"SJAG_00804":null,"SJAG_00816":null,"SJAG_00880":null,"SJAG_01021":null,"SJAG_01027":null,"SJAG_01112":null,"SJAG_01133":null,"SJAG_01177":null,"SJAG_01206":null,"SJAG_01264":null,"SJAG_01276":null,"SJAG_01409":null,"SJAG_01508":null,"SJAG_01516":null,"SJAG_01633":null,"SJAG_01642":null,"SJAG_01960":null,"SJAG_01972":null,"SJAG_02316":null,"SJAG_02399":null,"SJAG_02519":null,"SJAG_02640":null,"SJAG_02706":null,"SJAG_02839":null,"SJAG_02902":null,"SJAG_02910":null,"SJAG_02996":null,"SJAG_03015":null,"SJAG_03082":null,"SJAG_03158":null,"SJAG_03268":null,"SJAG_03302":null,"SJAG_03499":null,"SJAG_03528":null,"SJAG_03552":null,"SJAG_03555":null,"SJAG_03670":null,"SJAG_03790":null,"SJAG_03850":null,"SJAG_03871":null,"SJAG_03889":null,"SJAG_03933":null,"SJAG_04018":null,"SJAG_04023":null,"SJAG_04095":null,"SJAG_04112":null,"SJAG_04162":null,"SJAG_04340":null,"SJAG_04391":null,"SJAG_04401":null,"SJAG_04402":null,"SJAG_04406":null,"SJAG_04474":null,"SJAG_04592":null,"SJAG_04668":null,"SJAG_04697":null,"SJAG_04714":null,"SJAG_04739":null,"SJAG_04770":null,"SJAG_04906":null,"SJAG_05013":null,"SJAG_05209":null,"SJAG_05286":null,"SJAG_05736":null,"SJAG_06588":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"part_of","termid":"GO:0005794"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005794","GO:0005575","GO:0005737"],"is_obsolete":false,"name":"Golgi membrane","references_by_uniquename":{"GO_REF:0000104":null,"GO_REF:0000107":null,"GO_REF:0000108":null,"PMID:21873635":null},"synonyms":[{"name":"Golgi apparatus membrane","type":"exact"}],"termid":"GO:0000139","terms_by_termid":{"GO:0000136":null,"GO:0000139":null,"GO:0140497":null}}


id: PBO:0058414
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 4783","termid":"PBO:0058414"}


id: PBO:0004484
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"saccharopine dehydrogenase (predicted)","termid":"PBO:0004484"}


id: GO:1904843
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a nitroglycerin stimulus.","definition_xrefs":["GO_REF:0000071","GOC:TermGenie","PMID:25626975"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular response to nitrogen compound","termid":"GO:1901699"},{"relation_name":"is_a","term_name":"cellular response to oxygen-containing compound","termid":"GO:1901701"},{"relation_name":"is_a","term_name":"response to nitroglycerin","termid":"GO:1904842"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cellular response to nitroglycerin","synonyms":[{"name":"cellular response to nitroglycerine","type":"exact"},{"name":"cellular response to nitroglycerol","type":"exact"},{"name":"cellular response to trinitroglycerin","type":"exact"},{"name":"cellular response to trinitroglycerol","type":"exact"}],"termid":"GO:1904843"}


id: PBO:0025481
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"fluoride channel Fex2","termid":"PBO:0025481"}


id: PBO:0075384
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SOX30 pseudogene 1","termid":"PBO:0075384"}


id: PBO:0062869
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"OTU deubiquitinase 6A","termid":"PBO:0062869"}


id: PBO:0038726
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"actin gamma 1 pseudogene 21","termid":"PBO:0038726"}


id: PBO:0004362
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"fimbrin","termid":"PBO:0004362"}


id: GO:0006082
data:
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id: PBO:0071089
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id: PBO:0044977
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id: PBO:0038597
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id: GO:0051761
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id: GO:0102542
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id: GO:0020030
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id: GO:0004676
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id: PBO:0063019
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id: PR:G2TRP7
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id: PBO:0062928
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id: PBO:0081504
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id: GO:1990191
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id: PBO:0086706
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id: PBO:0057643
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id: PBO:0064141
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id: MOD:00183
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id: GO:0050670
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id: PBO:0044205
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id: GO:0031573
data:
  {"annotated_genes":["SJAG_02563","SJAG_00623","SJAG_05373","SJAG_03048","SJAG_03160","SJAG_04287","SJAG_04671","SJAG_00429","SJAG_03026","SJAG_00327","SJAG_01677","SJAG_00640","SJAG_00364","SJAG_01044","SJAG_01708","SJAG_03898","SJAG_01605","SJAG_02771","SJAG_04332"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[73881,77710,77891,78073,84844,84887,86126,87072,90130,91575,94695,94856,96326,97795,101980,103018,106972,107279,111206],"is_not":false,"summary":null,"term":"GO:0031573"}]},"cv_name":"biological_process","definition":"A mitotic cell cycle checkpoint that slows DNA synthesis in response to DNA damage by the prevention of new origin firing and the stabilization of slow replication fork progression.","definition_xrefs":["GOC:vw"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mitotic DNA damage checkpoint signaling","termid":"GO:0044773"}],"gene_count":19,"genes_by_uniquename":{"SJAG_00327":null,"SJAG_00364":null,"SJAG_00429":null,"SJAG_00623":null,"SJAG_00640":null,"SJAG_01044":null,"SJAG_01605":null,"SJAG_01677":null,"SJAG_01708":null,"SJAG_02563":null,"SJAG_02771":null,"SJAG_03026":null,"SJAG_03048":null,"SJAG_03160":null,"SJAG_03898":null,"SJAG_04287":null,"SJAG_04332":null,"SJAG_04671":null,"SJAG_05373":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0007049"},{"rel_name":"regulates","termid":"GO:0007049"},{"rel_name":"negatively_regulates","termid":"GO:0007049"}],"interesting_parent_ids":["GO:0023052","GO:0007049","GO:0008150"],"is_obsolete":false,"name":"mitotic intra-S DNA damage checkpoint signaling","references_by_uniquename":{"GO_REF:0000107":null,"PMID:21873635":null},"secondary_identifiers":["GO:0072428"],"synonyms":[{"name":"S-phase checkpoint","type":"broad"},{"name":"intra-S DNA damage checkpoint","type":"exact"},{"name":"mitotic intra-S DNA damage checkpoint","type":"exact"},{"name":"signal transduction involved in intra-S DNA damage checkpoint","type":"exact"}],"termid":"GO:0031573","terms_by_termid":{"GO:0031573":null}}


id: PBO:0052169
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"potassium inwardly rectifying channel subfamily J member 18","termid":"PBO:0052169"}


id: PBO:0055100
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2518","termid":"PBO:0055100"}


id: GO:0060205
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The volume enclosed by a cytoplasmic vesicle.","definition_xrefs":["GOC:dph","GOC:vesicles"],"direct_ancestors":[{"relation_name":"is_a","term_name":"vesicle lumen","termid":"GO:0031983"},{"relation_name":"is_a","term_name":"intracellular organelle lumen","termid":"GO:0070013"},{"relation_name":"part_of","term_name":"cytoplasmic vesicle","termid":"GO:0031410"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0031410"},{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0031410","GO:0005575","GO:0005737"],"is_obsolete":false,"name":"cytoplasmic vesicle lumen","synonyms":[{"name":"cytoplasmic membrane-bounded vesicle lumen","type":"related"},{"name":"cytoplasmic membrane-enclosed vesicle lumen","type":"related"}],"termid":"GO:0060205"}


id: GO:0090299
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the rate, frequency, or extent of neural crest formation. Neural crest formation is the formation of the specialized region of ectoderm between the neural ectoderm (neural plate) and non-neural ectoderm. The neural crest gives rise to the neural crest cells that migrate away from this region as neural tube formation proceeds.","definition_xrefs":["GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of epithelial to mesenchymal transition","termid":"GO:0010717"},{"relation_name":"is_a","term_name":"regulation of anatomical structure morphogenesis","termid":"GO:0022603"},{"relation_name":"regulates","term_name":"neural crest formation","termid":"GO:0014029"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of neural crest formation","termid":"GO:0090299"}


id: RO:0002244
data:
  {"annotation_feature_type":"gene","cv_name":"relationship","definition":"Any relationship between an exposure event or process and any other entity.","direct_ancestors":[{"relation_name":"is_a","term_name":"causally_related_to","termid":"RO:0002410"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"related_via_exposure_to","termid":"RO:0002244"}


id: GO:0008257
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: ATP + protein L-histidine = ADP + protein N(tau)-phospho-L-histidine.","definition_xrefs":["EC:2.7.13.2"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein histidine kinase activity","termid":"GO:0004673"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0004672"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016301"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0140096"}],"interesting_parent_ids":["GO:0016740","GO:0004672","GO:0016301","GO:0003824","GO:0140096","GO:0003674"],"is_obsolete":false,"name":"protein histidine tele-kinase activity","secondary_identifiers":["RHEA:11860","MetaCyc:2.7.13.2-RXN"],"synonyms":[{"name":"ATP:protein-L-histidine N-tele-phosphotransferase activity","type":"related"},{"name":"ATP:protein-L-histidine Ntau-phosphotransferase activity","type":"related"},{"name":"protein-histidine tele-kinase activity","type":"exact"}],"termid":"GO:0008257"}


id: PBO:0062272
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 5 subfamily H member 3 pseudogene","termid":"PBO:0062272"}


id: MOD:01448
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts a source amino acid residue to L-3,3-dihydroxyoalanine.","definition_xrefs":["PubMed:17558559","RESID:AA0492","PubMed:11435113"],"direct_ancestors":[{"relation_name":"is_a","term_name":"modified residue that can arise from different natural residues","termid":"MOD:00859"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"L-3,3-dihydroxyoalanine","synonyms":[{"name":"(S)-2-amino-3,3-dihydroxypropanoic acid","type":"exact"},{"name":"2-(dihydroxymethyl)glycine","type":"exact"},{"name":"3,3-dihydroxy-L-alanine","type":"exact"},{"name":"3,3-dihydroxyalanine","type":"exact"},{"name":"3-hydroxy-L-serine","type":"exact"},{"name":"3-oxoalanine hydrate","type":"exact"},{"name":"C(alpha)-formylglycine hydrate","type":"related"}],"termid":"MOD:01448"}


id: PBO:0052194
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"potassium calcium-activated channel subfamily M regulatory beta subunit 3","termid":"PBO:0052194"}


id: GO:0030879
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of the mammary gland over time, from its formation to the mature structure. The mammary gland is a large compound sebaceous gland that in female mammals is modified to secrete milk. Its development starts with the formation of the mammary line and ends as the mature gland cycles between nursing and weaning stages.","definition_xrefs":["PMID:9576833"],"direct_ancestors":[{"relation_name":"is_a","term_name":"gland development","termid":"GO:0048732"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"mammary gland development","synonyms":[{"name":"mammogenesis","type":"narrow"}],"termid":"GO:0030879"}


id: PBO:0050372
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"heterogeneous nuclear ribonucleoprotein A1 pseudogene 75","termid":"PBO:0050372"}


id: PBO:0084142
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"High-affinity glucose transporter; member of the major facilitator superfamily, nearly identical to Hxt7p, expressed at high basal levels relative to other HXTs, repression of expression by high glucose requires SNF3; HXT6 has a paralog, HXT1, that arose from the whole genome duplication","termid":"PBO:0084142"}


id: PBO:0074935
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nucleolar RNA, C/D box 102","termid":"PBO:0074935"}


id: PR:O94567
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"An asparagine--tRNA ligase, cytoplasmic that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO02402","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"asparagine--tRNA ligase, cytoplasmic (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC1773.10c","secondary_identifiers":["UniProtKB:O94567"],"synonyms":[{"name":"AsnRS (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-NARS","type":"exact"},{"name":"asparaginyl-tRNA synthetase (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:O94567"}


id: PBO:0004216
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glyceraldehyde-3-phosphate dehydrogenase Tdh1","termid":"PBO:0004216"}


id: GO:0045231
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a slime layer. A slime layer is an easily removed, diffuse, unorganized layer of extracellular material that surrounds a cell.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"external encapsulating structure organization","termid":"GO:0045229"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"slime layer organization","synonyms":[{"name":"slime layer organisation","type":"exact"},{"name":"slime layer organization and biogenesis","type":"related"}],"termid":"GO:0045231"}


id: PBO:0044663
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"defective in cullin neddylation 1 domain containing 5","termid":"PBO:0044663"}


id: PBO:0076099
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"syntaxin 5","termid":"PBO:0076099"}


id: PBO:0025439
data:
  {"annotation_feature_type":"gene","cv_name":"disease_associated","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glutaric acidemia type II","termid":"PBO:0025439"}


id: PBO:0080572
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"WD repeat and HMG-box DNA binding protein 1","termid":"PBO:0080572"}


id: PBO:0084547
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Member of the PUF protein family; PUF family is defined by the presence of Pumilio homology domains that confer RNA binding activity; preferentially binds mRNAs encoding nucleolar ribosomal RNA-processing factors","termid":"PBO:0084547"}


id: PATO:0000043
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A quality of a physical entity inhering in a bearer by virtue of whether the bearer's molecules are being perceived by a taste and odorant receptors.","definition_xrefs":["PATOC:GVG"],"direct_ancestors":[{"relation_name":"is_a","term_name":"physical quality","termid":"PATO:0001018"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"flavor","termid":"PATO:0000043"}


id: PBO:0054273
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1661","termid":"PBO:0054273"}


id: PBO:0041447
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chromosome 9 open reading frame 131","termid":"PBO:0041447"}


id: PBO:0059144
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"megakaryocyte and platelet inhibitory receptor G6b","termid":"PBO:0059144"}


id: PBO:0041882
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cation channel sperm associated 1","termid":"PBO:0041882"}


id: PR:O42910
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- ppr7 gene.","definition_xrefs":["UniProtKB:O42910","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pentatricopeptide repeat-containing protein 7, mitochondrial (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC16A3.03c","synonyms":[{"name":"Spom972h-ppr7","type":"exact"}],"termid":"PR:O42910"}


id: PR:Q9UUI7
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPAC22F8.05 gene.","definition_xrefs":["UniProtKB:Q9UUI7","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"alpha,alpha-trehalose-phosphate synthase [UDP-forming] 100 kDa subunit (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC22F8.05","synonyms":[{"name":"Spom972h-SPAC22F8.05","type":"exact"},{"name":"UDP-glucose-glucosephosphate glucosyltransferase (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"trehalose-6-phosphate synthase (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:Q9UUI7"}


id: PBO:0073067
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"syndecan 4 pseudogene","termid":"PBO:0073067"}


id: PBO:0029285
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_protein_localization_to_nucleolus","termid":"PBO:0029285"}


id: PBO:0059016
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MMP2 antisense RNA 1","termid":"PBO:0059016"}


id: GO:0018669
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 3-hydroxybenzoate + H+ + NADH + O2 = 2,5-dihydroxybenzoate + H2O + NAD+.","definition_xrefs":["EC:1.14.13.24","RHEA:22692"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen","termid":"GO:0016709"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003824","GO:0016491","GO:0003674"],"is_obsolete":false,"name":"3-hydroxybenzoate 6-monooxygenase activity","secondary_identifiers":["MetaCyc:3-HYDROXYBENZOATE-6-MONOOXYGENASE-RXN","KEGG_REACTION:R02589","UM-BBD_reactionID:r0402"],"synonyms":[{"name":"3-hydroxybenzoate 6-hydroxylase activity","type":"exact"},{"name":"3-hydroxybenzoate,NADH:oxygen oxidoreductase (6-hydroxylating)","type":"related"},{"name":"3-hydroxybenzoic acid-6-hydroxylase activity","type":"related"},{"name":"m-hydroxybenzoate 6-hydroxylase activity","type":"related"}],"termid":"GO:0018669"}


id: FYPO:0007609
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the posttranscriptional methylation of a guanosine residue in a tRNA molecule to form 7-methylguanosine does not occur.","definition_xrefs":["PMID:32841241","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal tRNA methylation","termid":"FYPO:0001766"},{"relation_name":"is_a","term_name":"abolished cellular process","termid":"FYPO:0005449"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0006551"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000294"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001320","FYPO:0006551","FYPO:0005447","FYPO:0000294","FYPO:0001985"],"is_obsolete":false,"name":"abolished tRNA guanosine 7-methylation","synonyms":[{"name":"abolished 7-methylguanosine level in tRNA","type":"related"},{"name":"abolished tRNA 7-methylguanosine formation","type":"exact"},{"name":"abolished tRNA guanosine 7-methylation during mitotic cell cycle","type":"related"},{"name":"abolished tRNA guanosine 7-methylation during vegetative growth","type":"exact"},{"name":"abolished tRNA m7G formation","type":"exact"},{"name":"tRNA guanosine 7-methylation abolished","type":"exact"}],"termid":"FYPO:0007609"}


id: PBO:0064780
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protein phosphatase, Mg2+/Mn2+ dependent 1A pseudogene 1","termid":"PBO:0064780"}


id: GO:0007074
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that increases the frequency, rate or extent of transcription from an RNA polymerase II promoter as the cell leaves M phase. M phase is the part of the mitotic cell cycle during which mitosis and cytokinesis take place.","definition_xrefs":["GOC:dph","GOC:tb"],"gene_count":0,"genotype_count":0,"name":"obsolete positive regulation of transcription involved in exit from mitosis, from RNA polymerase II promoter (obsolete GO:0007074)","synonyms":[{"name":"activation of transcription on exit from mitosis, from Pol II promoter","type":"narrow"},{"name":"activation of transcription on exit from mitosis, from RNA polymerase II promoter","type":"narrow"}],"termid":"GO:0007074"}


id: PBO:0017016
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"iron-sulfur cluster protein (predicted)","termid":"PBO:0017016"}


id: GO:0098795
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A posttranscriptional gene silencing pathway that involves the cleavage of mRNAs in a non-gene-specific manner.","definition_xrefs":["PMID:15009896"],"direct_ancestors":[{"relation_name":"is_a","term_name":"post-transcriptional gene silencing","termid":"GO:0016441"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0010467"},{"rel_name":"negatively_regulates","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0010467","GO:0008150"],"is_obsolete":false,"name":"global gene silencing by mRNA cleavage","secondary_identifiers":["GO:0030423"],"synonyms":[{"name":"RNA interference, targeting of mRNA for destruction","type":"related"},{"name":"gene silencing by mRNA cleavage","type":"broad"},{"name":"mRNA cleavage involved in gene silencing","type":"broad"},{"name":"mRNA destabilization-mediated gene silencing","type":"related"},{"name":"targeting of mRNA for destruction involved in RNA interference","type":"related"}],"termid":"GO:0098795"}


id: PBO:0085563
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein distantly similar to ceramide synthases, Lag1p and Lac1p; mutation confers sensitivity to inhibitors of sphingolipid biosynthesis","termid":"PBO:0085563"}


id: GO:0106005
data:
  {"annotated_genes":["SJAG_04034"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[59765],"is_not":false,"summary":null,"term":"GO:0106005"}]},"cv_name":"biological_process","definition":"The process whereby a guanine in 5-cap is methylated at the N7 position of guanine.","definition_xrefs":["GOC:hjd"],"direct_ancestors":[{"relation_name":"is_a","term_name":"RNA (guanine-N7)-methylation","termid":"GO:0036265"},{"relation_name":"part_of","term_name":"7-methylguanosine RNA capping","termid":"GO:0009452"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04034":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0010467"],"is_obsolete":false,"name":"RNA 5'-cap (guanine-N7)-methylation","references_by_uniquename":{"GO_REF:0000108":null},"termid":"GO:0106005","terms_by_termid":{"GO:0106005":null}}


id: GO:2000774
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of cellular senescence.","definition_xrefs":["GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of cellular metabolic process","termid":"GO:0031325"},{"relation_name":"is_a","term_name":"regulation of cellular senescence","termid":"GO:2000772"},{"relation_name":"positively_regulates","term_name":"cellular senescence","termid":"GO:0090398"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of cellular senescence","termid":"GO:2000774"}


id: PBO:0079519
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tyrosinase","termid":"PBO:0079519"}


id: GO:1990477
data:
  {"annotated_genes":["SJAG_04768","SJAG_00701","SJAG_03939","SJAG_00456","SJAG_02382"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[83252,86456,104556,107099,107967],"is_not":false,"summary":null,"term":"GO:1990477"}]},"cv_name":"cellular_component","definition":"Protein complex formed by an RNA binding protein Red1, an RNA helicase Mtl1, Red5, Rmn1, Iss10/Pir1, and Ars2/Pir2. This complex is required for the recruitment of the nuclear exosome to Mmi1 nuclear focus. It is likely related to the human CBCN complex. This complex is also known as RNA silencing (NURS) complex.","definition_xrefs":["PMID:24713849","PMID:32012158","PMID:24210919"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nuclear protein-containing complex","termid":"GO:0140513"}],"gene_count":5,"genes_by_uniquename":{"SJAG_00456":null,"SJAG_00701":null,"SJAG_02382":null,"SJAG_03939":null,"SJAG_04768":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0005634"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005634","GO:0005575","GO:0032991"],"is_obsolete":false,"name":"MTREC complex","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["GO:1990345"],"synonyms":[{"name":"Mtl1-Red1 core complex","type":"exact"},{"name":"NURS complex","type":"exact"},{"name":"PAXT complex","type":"exact"}],"termid":"GO:1990477","terms_by_termid":{"GO:1990477":null}}


id: FYPO:0002875
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which transcription occurs to a greater extent than normal. All genes, or a specific subset of genes, may be affected.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"has_output","term_name":"increased RNA level","termid":"FYPO:0001890"},{"relation_name":"is_a","term_name":"abnormal transcription","termid":"FYPO:0005502"},{"relation_name":"is_a","term_name":"increased gene expression","termid":"FYPO:0006548"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0006551"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000294"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0006551","FYPO:0000294","FYPO:0001985","FYPO:0000002"],"is_obsolete":false,"name":"increased transcription","termid":"FYPO:0002875"}


id: PBO:0002997
data:
  {"annotation_feature_type":"gene","cv_name":"EC numbers","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"3.2.1.22","termid":"PBO:0002997"}


id: PBO:0057136
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 218-1","termid":"PBO:0057136"}


id: PBO:0003633
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TPR repeat protein, meiotically spliced","termid":"PBO:0003633"}


id: PBO:0000954
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"extended Fer/CIP4 (EFC) domain protein Cdc15","termid":"PBO:0000954"}


id: FYPO:0000906
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which mitochondrion inheritance is abnormal. Mitochondrion inheritance is a cellular process that results in the distribution of mitochondria into daughter cells after mitosis or meiosis, mediated by interactions between mitochondria and the cytoskeleton.","definition_xrefs":["PomBase:mah","GO:0000001"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal mitochondrial distribution","termid":"FYPO:0000489"},{"relation_name":"is_a","term_name":"abnormal mitochondrion inheritance","termid":"FYPO:0007274"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0001985","FYPO:0000002","FYPO:0000138","FYPO:0001320"],"is_obsolete":false,"name":"abnormal mitochondrion inheritance during vegetative growth","synonyms":[{"name":"abnormal mitochondrial inheritance during vegetative growth","type":"exact"},{"name":"abnormal mitochondrion inheritance during mitotic cell cycle","type":"related"}],"termid":"FYPO:0000906"}


id: PBO:0043459
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cyclin and CBS domain divalent metal cation transport mediator 4","termid":"PBO:0043459"}


id: GO:0045988
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of striated muscle contraction.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of striated muscle contraction","termid":"GO:0006942"},{"relation_name":"is_a","term_name":"negative regulation of muscle contraction","termid":"GO:0045932"},{"relation_name":"negatively_regulates","term_name":"striated muscle contraction","termid":"GO:0006941"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of striated muscle contraction","synonyms":[{"name":"down regulation of striated muscle contraction","type":"exact"},{"name":"down-regulation of striated muscle contraction","type":"exact"},{"name":"downregulation of striated muscle contraction","type":"exact"},{"name":"inhibition of striated muscle contraction","type":"narrow"}],"termid":"GO:0045988"}


id: GO:0046464
data:
  {"annotated_genes":["SJAG_02543","SJAG_03604","SJAG_02089","SJAG_01036"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[77153],"is_not":false,"summary":null,"term":"GO:0046464"},{"annotations":[112672,71478,87528],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0019433"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of acylglycerol, any mono-, di- or triester of glycerol with (one or more) fatty acids.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"acylglycerol metabolic process","termid":"GO:0006639"},{"relation_name":"is_a","term_name":"neutral lipid catabolic process","termid":"GO:0046461"},{"relation_name":"is_a","term_name":"glycerolipid catabolic process","termid":"GO:0046503"}],"gene_count":4,"genes_by_uniquename":{"SJAG_01036":null,"SJAG_02089":null,"SJAG_02543":null,"SJAG_03604":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006629"},{"rel_name":"is_a","termid":"GO:0044248"}],"interesting_parent_ids":["GO:0008150","GO:0006629","GO:0044248"],"is_obsolete":false,"name":"acylglycerol catabolic process","references_by_uniquename":{"GO_REF:0000107":null,"PMID:21873635":null},"synonyms":[{"name":"acylglycerol breakdown","type":"exact"},{"name":"acylglycerol catabolism","type":"exact"},{"name":"acylglycerol degradation","type":"exact"}],"termid":"GO:0046464","terms_by_termid":{"GO:0019433":null,"GO:0046464":null}}


id: GO:0050577
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: GDP-L-fucose + NAD+ = GDP-4-dehydro-6-deoxy-D-mannose + NADH + H+.","definition_xrefs":["MetaCyc:1.1.1.271-RXN","EC:1.1.1.271"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor","termid":"GO:0016616"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003824","GO:0016491","GO:0003674"],"is_obsolete":false,"name":"GDP-L-fucose synthase activity","secondary_identifiers":["Reactome:R-HSA-6787642","RHEA:18885"],"synonyms":[{"name":"GDP-4-keto-6-deoxy-D-mannose-3,5-epimerase-4-reductase activity","type":"related"},{"name":"GDP-L-fucose:NADP+ 4-oxidoreductase (3,5-epimerizing)","type":"related"},{"name":"GDP-fucose synthetase activity","type":"related"}],"termid":"GO:0050577"}


id: GO:0005150
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a Type I interleukin-1 receptor.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"interleukin-1 receptor binding","termid":"GO:0005149"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005515"}],"interesting_parent_ids":["GO:0005515","GO:0003674","GO:0005488"],"is_obsolete":false,"name":"interleukin-1, type I receptor binding","synonyms":[{"name":"IL-1 type I","type":"narrow"},{"name":"interleukin-1, type I receptor ligand","type":"narrow"}],"termid":"GO:0005150"}


id: PBO:0016537
data:
  {"annotation_feature_type":"gene","cv_name":"complementation","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"functionally complements S. cerevisiae YPR081C","termid":"PBO:0016537"}


id: PBO:0070322
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNY3 pseudogene 11","termid":"PBO:0070322"}


id: PBO:0058530
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 6075","termid":"PBO:0058530"}


id: PBO:0047748
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"folliculin interacting protein 1","termid":"PBO:0047748"}


id: PBO:0040333
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ATP synthase membrane subunit c locus 1 pseudogene 8","termid":"PBO:0040333"}


id: PBO:0012831
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"exosome subunit Rrp40","termid":"PBO:0012831"}


id: GO:0007548
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The establishment of the sex of an organism by physical differentiation.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"developmental process involved in reproduction","termid":"GO:0003006"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"sex differentiation","secondary_identifiers":["Wikipedia:Sexual_differentiation"],"termid":"GO:0007548"}


id: PBO:0065944
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RAD1 checkpoint DNA exonuclease","termid":"PBO:0065944"}


id: GO:0035355
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A heterodimeric protein complex containing Toll-like receptor 2 (TLR2) and Toll-like receptor 6 (TLR6).","definition_xrefs":["GOC:add","PMID:21481769","GOC:signaling","PMID:19931471"],"direct_ancestors":[{"relation_name":"is_a","term_name":"plasma membrane signaling receptor complex","termid":"GO:0098802"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005886"}],"interesting_parent_ids":["GO:0005575","GO:0032991","GO:0005886"],"is_obsolete":false,"name":"Toll-like receptor 2-Toll-like receptor 6 protein complex","secondary_identifiers":["GO:0038126"],"synonyms":[{"name":"TLR2-TLR6 protein complex","type":"exact"},{"name":"TLR2:TLR6 heterodimer","type":"exact"},{"name":"TLR6:TLR2 complex","type":"exact"},{"name":"toll-like receptor TLR6:TLR2 heterodimeric complex","type":"exact"}],"termid":"GO:0035355"}


id: PBO:0000741
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase family or domain","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Rho family","termid":"PBO:0000741"}


id: PBO:0074827
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nucleolar RNA, C/D box 23","termid":"PBO:0074827"}


id: PBO:0049234
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"GRM5 pseudogene 1","termid":"PBO:0049234"}


id: CHEBI:63247
data:
  {"annotation_feature_type":"gene","cv_name":"chebi_ontology","direct_ancestors":[{"relation_name":"is_a","term_name":"chemical entity","termid":"CHEBI:24431"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"reducing agent","termid":"CHEBI:63247"}


id: PBO:0069463
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 728, pseudogene","termid":"PBO:0069463"}


id: PBO:0042665
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CEA cell adhesion molecule 21","termid":"PBO:0042665"}


id: FYPO:0005992
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to P-bodies is decreased.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal protein localization during vegetative growth","termid":"FYPO:0000443"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0005447","FYPO:0001985","FYPO:0000002","FYPO:0000138"],"is_obsolete":false,"name":"decreased protein localization to P-bodies","synonyms":[{"name":"decreased protein localisation to P-bodies","type":"exact"},{"name":"decreased protein localization to P-bodies during mitotic cell cycle","type":"related"},{"name":"decreased protein localization to P-bodies during vegetative growth","type":"exact"},{"name":"decreased protein localization to P-body","type":"exact"},{"name":"decreased protein localization to cytoplasmic P-bodies","type":"exact"},{"name":"reduced protein localization to P-bodies","type":"exact"}],"termid":"FYPO:0005992"}


id: PBO:0051494
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"immunoglobulin superfamily member 11","termid":"PBO:0051494"}


id: PBO:0004174
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ER oxidoreductin Ero1a","termid":"PBO:0004174"}


id: PBO:0091097
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SWI/SNF ATP-dependent chromatin remodeler Snf22","termid":"PBO:0091097"}


id: PBO:0071451
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L31 pseudogene 57","termid":"PBO:0071451"}


id: GO:1900104
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of hyaluranon cable assembly.","definition_xrefs":["GOC:yaf","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of cellular component biogenesis","termid":"GO:0044087"},{"relation_name":"is_a","term_name":"regulation of cellular component organization","termid":"GO:0051128"},{"relation_name":"regulates","term_name":"hyaluranon cable assembly","termid":"GO:0036118"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0044085"}],"interesting_parent_ids":["GO:0044085","GO:0008150"],"is_obsolete":false,"name":"regulation of hyaluranon cable assembly","synonyms":[{"name":"regulation of HA cable assembly","type":"exact"}],"termid":"GO:1900104"}


id: GO:0007156
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The attachment of a plasma membrane adhesion molecule in one cell to an identical molecule in an adjacent cell.","definition_xrefs":["ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell-cell adhesion via plasma-membrane adhesion molecules","termid":"GO:0098742"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0007155"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0007155"],"is_obsolete":false,"name":"homophilic cell adhesion via plasma membrane adhesion molecules","termid":"GO:0007156"}


id: PBO:0074449
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"survival of motor neuron 1, telomeric","termid":"PBO:0074449"}


id: PBO:0059190
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MAS related GPR family member F","termid":"PBO:0059190"}


id: PBO:0085676
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein involved in pre-mRNA splicing; component of the pre-spliceosome; associates with U2 snRNA; involved in ER to Golgi transport","termid":"PBO:0085676"}


id: PBO:0071608
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L36a pseudogene 26","termid":"PBO:0071608"}


id: PBO:0057435
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 552","termid":"PBO:0057435"}


id: PBO:0108899
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RPL7L1 pseudogene 12","termid":"PBO:0108899"}


id: PBO:0001748
data:
  {"annotation_feature_type":"gene","cv_name":"EC numbers","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"6.1.1.14","termid":"PBO:0001748"}


id: PBO:0091501
data:
  {"annotation_feature_type":"gene","cv_name":"genome_org","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"alternative transcript, alternative initiation site","termid":"PBO:0091501"}


id: PR:O94474
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A tetratricopeptide repeat protein 37 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx","OMA:SCHPO04988"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"superkiller protein 3 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC1919.05","secondary_identifiers":["UniProtKB:O94474"],"synonyms":[{"name":"Spom972h-TTC37","type":"exact"}],"termid":"PR:O94474"}


id: GO:0001957
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Direct ossification that occurs within mesenchyme or an accumulation of relatively unspecialized cells.","definition_xrefs":["ISBN:0878932437"],"direct_ancestors":[{"relation_name":"is_a","term_name":"direct ossification","termid":"GO:0036072"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"intramembranous ossification","secondary_identifiers":["Wikipedia:Intramembranous_ossification"],"synonyms":[{"name":"dermal ossification","type":"narrow"},{"name":"intramembranous bone ossification","type":"related"}],"termid":"GO:0001957"}


id: GO:0030672
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The lipid bilayer surrounding a synaptic vesicle.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"exocytic vesicle membrane","termid":"GO:0099501"},{"relation_name":"part_of","term_name":"synaptic vesicle","termid":"GO:0008021"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0031410"},{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0031410","GO:0005737","GO:0005575"],"is_obsolete":false,"name":"synaptic vesicle membrane","termid":"GO:0030672"}


id: PBO:0079169
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"translocator protein 2","termid":"PBO:0079169"}


id: FYECO:0000088
data:
  {"annotation_feature_type":"gene","cv_name":"fission_yeast_phenotype_condition","definition":"An experimental condition in which 2-oxoglutarate was added to the medium or assay buffer in excess compared to standard medium or assay buffers.","definition_xrefs":["PomBase:al"],"direct_ancestors":[{"relation_name":"is_a","term_name":"grouping excess","termid":"FYECO:0000109"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"+ 2-OG","synonyms":[{"name":"2-OG present","type":"exact"},{"name":"2-oxoglutarate added","type":"exact"},{"name":"2-oxoglutarate present","type":"exact"}],"termid":"FYECO:0000088"}


id: MOD:01337
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-asparagine residue to L-aspartate 4-methyl ester.","definition_xrefs":["Unimod:528#N"],"direct_ancestors":[{"relation_name":"is_a","term_name":"L-aspartic acid 4-methyl ester","termid":"MOD:01181"},{"relation_name":"is_a","term_name":"deamidated and methyl esterified residue","termid":"MOD:01369"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:00427"}],"interesting_parent_ids":["MOD:00427"],"is_obsolete":false,"name":"deamidated 4-methyl esterified asparagine","synonyms":[{"name":"Deamidation followed by a methylation","type":"related"},{"name":"Methyl+Deamidated","type":"related"}],"termid":"MOD:01337"}


id: PBO:0068014
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 5S ribosomal pseudogene 319","termid":"PBO:0068014"}


id: PBO:0044841
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"defensin beta 129","termid":"PBO:0044841"}


id: PBO:0039726
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"apolipoprotein B mRNA editing enzyme catalytic subunit 3H","termid":"PBO:0039726"}


id: PATO:0001006
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0001006 absolute latency (obsolete PATO:0001006)","termid":"PATO:0001006"}


id: FYPO:0001940
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which the observed rate of ubiquinol-cytochrome-c reductase activity is decreased.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased oxidoreductase activity","termid":"FYPO:0000690"},{"relation_name":"is_a","term_name":"abnormal ubiquinol-cytochrome-c reductase activity","termid":"FYPO:0001939"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0002114"},{"rel_name":"is_a","termid":"FYPO:0000707"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0000654"},{"rel_name":"is_a","termid":"FYPO:0000661"},{"rel_name":"is_a","termid":"FYPO:0000138"}],"interesting_parent_ids":["FYPO:0000654","FYPO:0002114","FYPO:0000138","FYPO:0005447","FYPO:0000707","FYPO:0000652","FYPO:0000002","FYPO:0001985","FYPO:0000661"],"is_obsolete":false,"name":"decreased ubiquinol-cytochrome-c reductase activity","synonyms":[{"name":"reduced ubiquinol-cytochrome-c reductase activity","type":"exact"}],"termid":"FYPO:0001940"}


id: PBO:0029554
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-sensitive_to_ethyl_methanesulfonate","termid":"PBO:0029554"}


id: GO:0034090
data:
  {"annotated_genes":["SJAG_01805","SJAG_04126","SJAG_03989","SJAG_04259","SJAG_01601","SJAG_00600","SJAG_03681","SJAG_01082","SJAG_00229","SJAG_03926"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[96741,99900,94634,111042,103167,89403,97245,108439,108990,109686],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1990813"}]},"cv_name":"biological_process","definition":"The process in which the association between sister chromatids of a replicated chromosome is maintained as chromosomes condense, attach to the spindle in a bipolar orientation, and congress to the metaphase plate during a meiotic cell cycle.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"maintenance of sister chromatid cohesion","termid":"GO:0034086"},{"relation_name":"part_of","term_name":"meiotic sister chromatid cohesion","termid":"GO:0051177"}],"gene_count":10,"genes_by_uniquename":{"SJAG_00229":null,"SJAG_00600":null,"SJAG_01082":null,"SJAG_01601":null,"SJAG_01805":null,"SJAG_03681":null,"SJAG_03926":null,"SJAG_03989":null,"SJAG_04126":null,"SJAG_04259":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0007049"}],"interesting_parent_ids":["GO:0007049","GO:0008150"],"is_obsolete":false,"name":"maintenance of meiotic sister chromatid cohesion","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0034090","terms_by_termid":{"GO:1990813":null}}


id: PBO:0048169
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"G2E3 antisense RNA 1","termid":"PBO:0048169"}


id: CHEBI:17515
data:
  {"annotation_feature_type":"gene","cv_name":"chebi_ontology","direct_ancestors":[{"relation_name":"is_a","term_name":"chemical entity","termid":"CHEBI:24431"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"L-gamma-glutamyl-L-cysteine","termid":"CHEBI:17515"}


id: GO:1905910
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of dauer entry.","definition_xrefs":["GOC:TermGenie","GO_REF:0000058","PMID:21531333"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of dauer larval development","termid":"GO:0061067"},{"relation_name":"is_a","term_name":"regulation of dauer entry","termid":"GO:1905909"},{"relation_name":"negatively_regulates","term_name":"dauer entry","termid":"GO:0043053"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of dauer entry","synonyms":[{"name":"down regulation of dauer entry","type":"exact"},{"name":"down regulation of nematode entry into dormancy","type":"exact"},{"name":"down-regulation of dauer entry","type":"exact"},{"name":"down-regulation of nematode entry into dormancy","type":"exact"},{"name":"downregulation of dauer entry","type":"exact"},{"name":"downregulation of nematode entry into dormancy","type":"exact"},{"name":"inhibition of dauer entry","type":"narrow"},{"name":"inhibition of nematode entry into dormancy","type":"narrow"},{"name":"negative regulation of nematode entry into dormancy","type":"exact"}],"termid":"GO:1905910"}


id: MOD:01895
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively replaces a residue alpha-amino- or alpha-imino-hydrogen with a 3x(12)C-labeled propanoyl group.","definition_xrefs":["PubMed:12175151","PubMed:11857757","Unimod:58#N-term","PubMed:11999733"],"direct_ancestors":[{"relation_name":"is_a","term_name":"alpha-amino propanoylated residue","termid":"MOD:00451"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:00649"}],"interesting_parent_ids":["MOD:00649"],"is_obsolete":false,"name":"alpha-amino 3x(12)C-labeled propanoylated residue","synonyms":[{"name":"Propionate labeling reagent light form (N-term & K)","type":"related"},{"name":"Propionyl","type":"related"}],"termid":"MOD:01895"}


id: PBO:0043891
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cysteine rich transmembrane BMP regulator 1","termid":"PBO:0043891"}


id: GO:0006354
data:
  {"annotated_genes":["SJAG_04257","SJAG_04038","SJAG_01128","SJAG_01562","SJAG_02209","SJAG_03144","SJAG_00150","SJAG_01765","SJAG_04933","SJAG_03578","SJAG_03944","SJAG_00139","SJAG_04670","SJAG_02873","SJAG_02416","SJAG_01948","SJAG_04202","SJAG_01610","SJAG_04353","SJAG_02698","SJAG_02101","SJAG_02551","SJAG_02097","SJAG_00731","SJAG_02238","SJAG_02393","SJAG_00293","SJAG_01213","SJAG_00483","SJAG_02653","SJAG_02314","SJAG_01707","SJAG_02871","SJAG_01444","SJAG_01151","SJAG_03128","SJAG_03061","SJAG_03956","SJAG_03481","SJAG_03118","SJAG_04106","SJAG_00119","SJAG_02070","SJAG_02691","SJAG_00914","SJAG_00925","SJAG_00320","SJAG_03967","SJAG_02057","SJAG_02319","SJAG_04261","SJAG_00913","SJAG_00540","SJAG_01698","SJAG_01313","SJAG_01149","SJAG_03006","SJAG_03211"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[77719],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0001193"},{"annotations":[113009],"is_not":false,"rel_names":["negatively_regulates","regulates"],"summary":null,"term":"GO:0034244"},{"annotations":[78398,70607],"is_not":false,"rel_names":["positively_regulates","regulates"],"summary":null,"term":"GO:0032786"},{"annotations":[110451,71637,77104,71158,104342,112111,101407],"is_not":false,"rel_names":["regulates","positively_regulates"],"summary":null,"term":"GO:0032968"},{"annotations":[98747,105954,87659,108721,76712,98105,85262,89510,108720,90777,109408,110665,108351,109009,105072,86070,101159,100258],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006362"},{"annotations":[100873,90778,95406,106727,109267,109584,101528,103230,87604,94655,108397,89550,111455,102180,88251],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006368"},{"annotations":[104093,111356,88000,91048,104097,90198,113874,98969,85763,86887,106519,112021,88994,109728,108813],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0140673"}]},"cv_name":"biological_process","definition":"The extension of an RNA molecule after transcription initiation and promoter clearance at a DNA-dependent RNA polymerase promoter by the addition of ribonucleotides catalyzed by an RNA polymerase.","definition_xrefs":["GOC:mah","PMID:15020047","GOC:txnOH","PMID:18280161"],"direct_ancestors":[{"relation_name":"is_a","term_name":"RNA biosynthetic process","termid":"GO:0032774"},{"relation_name":"part_of","term_name":"DNA-templated transcription","termid":"GO:0006351"}],"gene_count":58,"genes_by_uniquename":{"SJAG_00119":null,"SJAG_00139":null,"SJAG_00150":null,"SJAG_00293":null,"SJAG_00320":null,"SJAG_00483":null,"SJAG_00540":null,"SJAG_00731":null,"SJAG_00913":null,"SJAG_00914":null,"SJAG_00925":null,"SJAG_01128":null,"SJAG_01149":null,"SJAG_01151":null,"SJAG_01213":null,"SJAG_01313":null,"SJAG_01444":null,"SJAG_01562":null,"SJAG_01610":null,"SJAG_01698":null,"SJAG_01707":null,"SJAG_01765":null,"SJAG_01948":null,"SJAG_02057":null,"SJAG_02070":null,"SJAG_02097":null,"SJAG_02101":null,"SJAG_02209":null,"SJAG_02238":null,"SJAG_02314":null,"SJAG_02319":null,"SJAG_02393":null,"SJAG_02416":null,"SJAG_02551":null,"SJAG_02653":null,"SJAG_02691":null,"SJAG_02698":null,"SJAG_02871":null,"SJAG_02873":null,"SJAG_03006":null,"SJAG_03061":null,"SJAG_03118":null,"SJAG_03128":null,"SJAG_03144":null,"SJAG_03211":null,"SJAG_03481":null,"SJAG_03578":null,"SJAG_03944":null,"SJAG_03956":null,"SJAG_03967":null,"SJAG_04038":null,"SJAG_04106":null,"SJAG_04202":null,"SJAG_04257":null,"SJAG_04261":null,"SJAG_04353":null,"SJAG_04670":null,"SJAG_04933":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0006351"},{"rel_name":"part_of","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0008150","GO:0010467","GO:0006351"],"is_obsolete":false,"name":"DNA-templated transcription elongation","references_by_uniquename":{"GO_REF:0000107":null,"PMID:21873635":null},"secondary_identifiers":["GO:0001124"],"synonyms":[{"name":"DNA-dependent transcription, elongation","type":"exact"},{"name":"DNA-templated transcription, elongation","type":"exact"},{"name":"RNA elongation","type":"broad"},{"name":"RNA elongation from bacterial-type RNA polymerase promoter","type":"narrow"},{"name":"transcription elongation from bacterial-type RNA polymerase promoter","type":"narrow"},{"name":"transcription elongation, DNA-dependent","type":"exact"},{"name":"transcriptional elongation, DNA-dependent","type":"exact"}],"termid":"GO:0006354","terms_by_termid":{"GO:0001193":null,"GO:0006362":null,"GO:0006368":null,"GO:0032786":null,"GO:0032968":null,"GO:0034244":null,"GO:0140673":null}}


id: PBO:0069016
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 260, pseudogene","termid":"PBO:0069016"}


id: PBO:0075320
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"superoxide dismutase 1 pseudogene 2","termid":"PBO:0075320"}


id: PBO:0082203
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Alpha-1,2-mannosyltransferase; involved in O- and N-linked protein glycosylation; type II membrane protein; member of the KRE2/MNT1 mannosyltransferase family; relocalizes from vacuole to cytoplasm upon DNA replication stress","termid":"PBO:0082203"}


id: FYECO:0000076
data:
  {"annotation_feature_type":"gene","cv_name":"fission_yeast_phenotype_condition","definition":"An experimental condition in which dihydroxyacetone was added to the medium or assay buffer in excess compared to standard medium or assay buffers.","definition_xrefs":["PomBase:al"],"direct_ancestors":[{"relation_name":"is_a","term_name":"grouping excess","termid":"FYECO:0000109"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"+ dihydroxyacetone","synonyms":[{"name":"DHA added","type":"exact"}],"termid":"FYECO:0000076"}


id: GO:0045428
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of nitric oxide.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of cellular biosynthetic process","termid":"GO:0031326"},{"relation_name":"is_a","term_name":"regulation of nitric oxide metabolic process","termid":"GO:0080164"},{"relation_name":"regulates","term_name":"nitric oxide biosynthetic process","termid":"GO:0006809"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of nitric oxide biosynthetic process","synonyms":[{"name":"regulation of nitric oxide anabolism","type":"exact"},{"name":"regulation of nitric oxide biosynthesis","type":"exact"},{"name":"regulation of nitric oxide formation","type":"exact"},{"name":"regulation of nitric oxide synthesis","type":"exact"}],"termid":"GO:0045428"}


id: PBO:0086186
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein serine/threonine kinase; required for vesicle formation in autophagy and the cytoplasm-to-vacuole targeting (Cvt) pathway; structurally required for phagophore assembly site formation; forms a complex with Atg13p and Atg17p during autophagy; required for re-phosphorylation of Atg13p during termination of autophagy, following prolonged nitrogen starvation; essential for cell cycle progression from G2/M to G1 under nitrogen starvation","termid":"PBO:0086186"}


id: PR:Q9USY4
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- abp2 gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q9USY4"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ARS-binding protein 2 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC1861.02","synonyms":[{"name":"Spom972h-abp2","type":"exact"}],"termid":"PR:Q9USY4"}


id: GO:0008498
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. The trans-bilayer migration of phospholipids accelerated by a phospholipid scramblase upon binding calcium ions.","definition_xrefs":["OMIM:604170"],"gene_count":0,"genotype_count":0,"name":"obsolete phospholipid scrambling (obsolete GO:0008498)","synonyms":[{"name":"phospholipid scrambling","type":"exact"}],"termid":"GO:0008498"}


id: PBO:0078045
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"T cell receptor alpha joining 35 (non-functional)","termid":"PBO:0078045"}


id: PATO:0001394
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A ploidy quality inhering in a bearer by virtue of the bearer's having two copies (homologs) of each chromosome, usually one from the mother and one from the father.","definition_xrefs":["Wikipedia:http://en.wikipedia.org/wiki/Diploid"],"direct_ancestors":[{"relation_name":"is_a","term_name":"euploid","termid":"PATO:0001393"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"diploid","termid":"PATO:0001394"}


id: FYPO:0007345
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of any RNA transcribed from euchromatic regions measured in a cell is higher than normal.","definition_xrefs":["PomBase:mah","PMID:18957202"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased RNA level during vegetative growth","termid":"FYPO:0000825"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0006551"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0006551","FYPO:0005447","FYPO:0001985","FYPO:0001320"],"is_obsolete":false,"name":"increased euchromatin-derived RNA level","synonyms":[{"name":"increased accumulation of euchromatin-derived RNAs","type":"related"},{"name":"increased euchromatin-derived RNA accumulation","type":"related"},{"name":"increased euchromatin-derived RNA level during mitotic cell cycle","type":"related"},{"name":"increased euchromatin-derived RNA level during vegetative growth","type":"exact"},{"name":"increased euchromatin-derived transcript level","type":"exact"},{"name":"increased level of RNA transcribed from euchromatin","type":"exact"}],"termid":"FYPO:0007345"}


id: GO:0120333
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The radial spoke of each group of radial spokes, whether grouped as triplets or doublets, that is most proximal to the base of the cilium. Radial spoke 1 (RS1), similarly to radial spoke 2, is comprised of four domains: 1) a very short base anchored to the A microtubule, 2) an elongaged stalk, 3) a bifurcated neck, and 4) an orthogonal head. The base of RS1 is connected to the tail of the inner dynein arm a/d.","definition_xrefs":["PMID:22754630","GOC:krc"],"direct_ancestors":[{"relation_name":"is_a","term_name":"radial spoke","termid":"GO:0001534"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005737"}],"interesting_parent_ids":["GO:0005575","GO:0005737","GO:0032991"],"is_obsolete":false,"name":"radial spoke 1","synonyms":[{"name":"RS1","type":"related"}],"termid":"GO:0120333"}


id: PBO:0073699
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"src kinase associated phosphoprotein 1","termid":"PBO:0073699"}


id: PBO:0063802
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"phosphorylase kinase regulatory subunit alpha 1 pseudogene","termid":"PBO:0063802"}


id: FYPO:0003150
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the switch from the monopolar to bipolar mode of cell growth (new end take-off; NETO) occurs to a lower extent than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal NETO","termid":"FYPO:0000147"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0005568"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001985","FYPO:0001320","FYPO:0005447","FYPO:0005568"],"is_obsolete":false,"name":"decreased NETO","synonyms":[{"name":"decreased NETO during mitotic cell cycle","type":"related"},{"name":"decreased NETO during vegetative growth","type":"exact"},{"name":"decreased activation of bipolar cell growth","type":"related"},{"name":"decreased cell growth mode switching, monopolar to bipolar","type":"exact"},{"name":"decreased new end take-off","type":"exact"},{"name":"decreased switch from monopolar to bipolar cell growth","type":"exact"},{"name":"reduced NETO","type":"exact"}],"termid":"FYPO:0003150"}


id: GO:0044047
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. An interaction with the host organism mediated by a substance secreted by the other (symbiont) organism via a type I secretion system. The host is defined as the larger of the organisms involved in a symbiotic interaction.","definition_xrefs":["MITRE:tk"],"gene_count":0,"genotype_count":0,"name":"obsolete interaction with host via protein secreted by type I secretion system (obsolete GO:0044047)","termid":"GO:0044047"}


id: PBO:0032768
data:
  {"annotation_feature_type":"gene","cv_name":"species_dist","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Schizosaccharomyces pombe specific protein, uncharacterized","termid":"PBO:0032768"}


id: MOD:00909
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that modifies an L-histidine residue.","definition_xrefs":["PubMed:18688235"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein modification categorized by amino acid modified","termid":"MOD:01157"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"modified L-histidine residue","synonyms":[{"name":"ModHis","type":"exact"}],"termid":"MOD:00909"}


id: GO:1903331
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of iron-sulfur cluster assembly.","definition_xrefs":["GO_REF:0000058","GOC:vw","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of cellular component organization","termid":"GO:0051130"},{"relation_name":"is_a","term_name":"regulation of iron-sulfur cluster assembly","termid":"GO:1903329"},{"relation_name":"positively_regulates","term_name":"iron-sulfur cluster assembly","termid":"GO:0016226"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0044085"},{"rel_name":"regulates","termid":"GO:0016226"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"positively_regulates","termid":"GO:0016226"}],"interesting_parent_ids":["GO:0044085","GO:0008150","GO:0016226"],"is_obsolete":false,"name":"positive regulation of iron-sulfur cluster assembly","synonyms":[{"name":"activation of iron-sulfur cluster assembly","type":"narrow"},{"name":"activation of iron-sulfur cluster biosynthesis","type":"related"},{"name":"activation of iron-sulphur cluster assembly","type":"narrow"},{"name":"positive regulation of iron-sulfur cluster biosynthesis","type":"related"},{"name":"positive regulation of iron-sulphur cluster assembly","type":"exact"},{"name":"up regulation of iron-sulfur cluster assembly","type":"exact"},{"name":"up regulation of iron-sulfur cluster biosynthesis","type":"related"},{"name":"up regulation of iron-sulphur cluster assembly","type":"exact"},{"name":"up-regulation of iron-sulfur cluster assembly","type":"exact"},{"name":"up-regulation of iron-sulfur cluster biosynthesis","type":"related"},{"name":"up-regulation of iron-sulphur cluster assembly","type":"exact"},{"name":"upregulation of iron-sulfur cluster assembly","type":"exact"},{"name":"upregulation of iron-sulfur cluster biosynthesis","type":"related"},{"name":"upregulation of iron-sulphur cluster assembly","type":"exact"}],"termid":"GO:1903331"}


id: GO:0120115
data:
  {"annotated_genes":["SJAG_03954","SJAG_02469","SJAG_03070","SJAG_01819","SJAG_05240","SJAG_01327","SJAG_03460"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[91380,101701,103850,108092,110102,111003,111540],"is_not":false,"summary":null,"term":"GO:0120115"}]},"cv_name":"cellular_component","definition":"A heteroheptameric, nuclear protein complex composed of Lsm2, Lsm3, Lsm4, Lsm5, Lsm6, Lsm7, and Lsm8, or orthologs thereof, that selectively binds to snRNAs, in particular U6 or U6atac snRNAs, and also to unspliced transcripts localized within the nucleus.","definition_xrefs":["PMID:23221597","GOC:krc","PMID:19121818","PMID:27627834","PMID:28768202","GOC:bhm"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Sm-like protein family complex","termid":"GO:0120114"}],"gene_count":7,"genes_by_uniquename":{"SJAG_01327":null,"SJAG_01819":null,"SJAG_02469":null,"SJAG_03070":null,"SJAG_03460":null,"SJAG_03954":null,"SJAG_05240":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0032991","GO:0005575"],"is_obsolete":false,"name":"Lsm2-8 complex","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0120115","terms_by_termid":{"GO:0120115":null}}


id: GO:0046144
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The chemical reactions and pathways involving D-alanine and related amino acids.","definition_xrefs":["GOC:ai"],"gene_count":0,"genotype_count":0,"name":"obsolete D-alanine family amino acid metabolic process (obsolete GO:0046144)","synonyms":[{"name":"D-alanine family amino acid metabolism","type":"exact"}],"termid":"GO:0046144"}


id: PBO:0061655
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nuclear FMR1 interacting protein 2","termid":"PBO:0061655"}


id: PBO:0064177
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"phospholipase A2 group XD, pseudogene","termid":"PBO:0064177"}


id: PBO:0046202
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ELOA pseudogene 1","termid":"PBO:0046202"}


id: PBO:0029185
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_cellular_trehalose_6-phosphate_level","termid":"PBO:0029185"}


id: GO:0071882
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A phospholipase C-activating receptor G protein-coupled receptor signaling pathway initiated by ligand binding to an adrenergic receptor on the surface of a target cell, and ending with the regulation of a downstream cellular process, e.g. transcription.","definition_xrefs":["GOC:BHF","GOC:signaling","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phospholipase C-activating G protein-coupled receptor signaling pathway","termid":"GO:0007200"},{"relation_name":"is_a","term_name":"adrenergic receptor signaling pathway","termid":"GO:0071875"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"phospholipase C-activating adrenergic receptor signaling pathway","synonyms":[{"name":"activation of phospholipase C activity by adrenergic receptor signaling pathway","type":"related"},{"name":"activation of phospholipase C activity by adrenergic receptor signalling pathway","type":"related"},{"name":"adrenergic receptor, phospholipase C activating pathway","type":"related"}],"termid":"GO:0071882"}


id: PBO:0050316
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"heterogeneous nuclear ribonucleoprotein A1 pseudogene 18","termid":"PBO:0050316"}


id: PBO:0069744
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 1025, pseudogene","termid":"PBO:0069744"}


id: PBO:0067357
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 455, pseudogene","termid":"PBO:0067357"}


id: FYPO:0005467
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to the actomyosin contractile ring is decreased during mitosis.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased protein localization to actomyosin contractile ring","termid":"FYPO:0002699"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000032"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000138"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001985","FYPO:0000032","FYPO:0001320","FYPO:0005447","FYPO:0000138","FYPO:0000631"],"is_obsolete":false,"name":"decreased protein localization to actomyosin contractile ring during mitosis","synonyms":[{"name":"decreased protein localisation to actomyosin contractile ring during mitosis","type":"exact"},{"name":"decreased protein localization to actomyosin contractile ring during mitosis during vegetative growth","type":"exact"},{"name":"decreased protein localization to actomyosin contractile ring during mitotic nuclear division","type":"exact"},{"name":"decreased protein localization to actomyosin contractile ring involved in mitotic cytokinesis during mitosis","type":"exact"},{"name":"decreased protein localization to cytokinetic contractile ring during mitosis","type":"exact"},{"name":"decreased protein localization to mitotic contractile ring during mitosis","type":"exact"},{"name":"decreased protein recruitment to actomyosin contractile ring during mitosis","type":"related"},{"name":"reduced protein localization to actomyosin contractile ring during mitosis","type":"exact"}],"termid":"FYPO:0005467"}


id: GO:0060045
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of cardiac muscle cell proliferation.","definition_xrefs":["GOC:dph","GOC:rph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of cell population proliferation","termid":"GO:0008284"},{"relation_name":"is_a","term_name":"positive regulation of cardiac muscle tissue growth","termid":"GO:0055023"},{"relation_name":"is_a","term_name":"regulation of cardiac muscle cell proliferation","termid":"GO:0060043"},{"relation_name":"positively_regulates","term_name":"cardiac muscle cell proliferation","termid":"GO:0060038"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of cardiac muscle cell proliferation","synonyms":[{"name":"positive regulation of heart muscle cell proliferation","type":"related"}],"termid":"GO:0060045"}


id: PBO:0030500
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_mitotic_DNA_damage_checkpoint","termid":"PBO:0030500"}


id: PBO:0053315
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 29","termid":"PBO:0053315"}


id: FYPO:0006407
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which cells show increased sensitivity to nitrosative stress.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"sensitive to stress during vegetative growth","termid":"FYPO:0000304"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000003"},{"rel_name":"is_a","termid":"FYPO:0000139"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000003","FYPO:0005447","FYPO:0000139"],"is_obsolete":false,"name":"sensitive to nitrosative stress","synonyms":[{"name":"decreased growth during cellular response to nitrosative stress","type":"exact"},{"name":"decreased vegetative cell population growth during cellular response to nitrosative stress","type":"exact"},{"name":"hypersensitive to nitrosative stress","type":"exact"},{"name":"sensitive to nitric oxide","type":"related"},{"name":"sensitive to nitrosative stress during mitotic cell cycle","type":"related"},{"name":"sensitive to nitrosative stress during vegetative growth","type":"exact"}],"termid":"FYPO:0006407"}


id: PBO:0066094
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RAS p21 protein activator 4C, pseudogene","termid":"PBO:0066094"}


id: PBO:0072987
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"stem cell inhibitory RNA transcript","termid":"PBO:0072987"}


id: PBO:0066896
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RN7SK pseudogene 196","termid":"PBO:0066896"}


id: GO:0032784
data:
  {"annotated_genes":["SJAG_02057","SJAG_02551","SJAG_03967","SJAG_03118","SJAG_01149","SJAG_01151","SJAG_03061","SJAG_01707","SJAG_00150","SJAG_01213"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[113009],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0034244"},{"annotations":[70607,78398],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0032786"},{"annotations":[110451,71637,101407,71158,104342,77104,112111],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0032968"}]},"cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of transcription elongation, the extension of an RNA molecule after transcription initiation and promoter clearance by the addition of ribonucleotides catalyzed by a DNA-dependent RNA polymerase.","definition_xrefs":["GOC:mah","GOC:txnOH"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of DNA-templated transcription","termid":"GO:0006355"},{"relation_name":"regulates","term_name":"DNA-templated transcription elongation","termid":"GO:0006354"}],"gene_count":10,"genes_by_uniquename":{"SJAG_00150":null,"SJAG_01149":null,"SJAG_01151":null,"SJAG_01213":null,"SJAG_01707":null,"SJAG_02057":null,"SJAG_02551":null,"SJAG_03061":null,"SJAG_03118":null,"SJAG_03967":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006355"},{"rel_name":"regulates","termid":"GO:0010467"},{"rel_name":"regulates","termid":"GO:0006351"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0010467","GO:0006351","GO:0008150","GO:0006355"],"is_obsolete":false,"name":"regulation of DNA-templated transcription elongation","references_by_uniquename":{"GO_REF:0000107":null,"PMID:21873635":null},"synonyms":[{"name":"regulation of DNA-dependent transcription, elongation","type":"exact"},{"name":"regulation of DNA-templated transcription, elongation","type":"exact"},{"name":"regulation of RNA elongation","type":"broad"},{"name":"regulation of transcription elongation, DNA-dependent","type":"exact"},{"name":"regulation of transcriptional elongation","type":"broad"},{"name":"transcription elongation regulator activity","type":"related"}],"termid":"GO:0032784","terms_by_termid":{"GO:0032786":null,"GO:0032968":null,"GO:0034244":null}}


id: PR:Q10069
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- mug151 gene.","definition_xrefs":["UniProtKB:Q10069","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"meiotically up-regulated gene 151 protein (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC3H1.03","synonyms":[{"name":"Spom972h-mug151","type":"exact"}],"termid":"PR:Q10069"}


id: PBO:0047251
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"family with sequence similarity 239 member B","termid":"PBO:0047251"}


id: PBO:0062695
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 51 subfamily B member 6","termid":"PBO:0062695"}


id: PBO:0028567
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_meiotic_homologous_chromosome_biorientation","termid":"PBO:0028567"}


id: FYPO:0001182
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which the observed rate of an alpha-glucosidase activity is normal (i.e. indistinguishable from wild type).","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal catalytic activity","termid":"FYPO:0000660"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0000654"}],"interesting_parent_ids":["FYPO:0000257","FYPO:0000654","FYPO:0000652"],"is_obsolete":false,"name":"normal alpha-glucosidase activity","termid":"FYPO:0001182"}


id: PBO:0073299
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"septin 14 pseudogene 21","termid":"PBO:0073299"}


id: GO:1990000
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The generation of amyloid fibrils, insoluble fibrous protein aggregates exhibiting beta sheet structure, from proteins.","definition_xrefs":["GOC:sj","PMID:29654159","GOC:jj","PMID:21148556","PMID:28937655","GOC:cvs","PMID:22817896","GOC:ppm"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein metabolic process","termid":"GO:0019538"},{"relation_name":"is_a","term_name":"supramolecular fiber organization","termid":"GO:0097435"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"amyloid fibril formation","synonyms":[{"name":"amyloid structure assembly","type":"related"},{"name":"amyloid structure formation","type":"related"},{"name":"amyloid fibril assembly","type":"related"}],"termid":"GO:1990000"}


id: PBO:0055344
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2772","termid":"PBO:0055344"}


id: PR:O59672
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"An ATP-binding cassette sub-family F member 3 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx","OMA:SCHPO03109"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized ABC transporter ATP-binding protein C29A3.09c (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC29A3.09c","secondary_identifiers":["UniProtKB:O59672"],"synonyms":[{"name":"Spom972h-ABCF3","type":"exact"}],"termid":"PR:O59672"}


id: GO:0018923
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving limonene (4-isopropenyl-1-methyl-cyclohexene), a monocyclic monoterpene.","definition_xrefs":["UM-BBD_pathwayID:lim"],"direct_ancestors":[{"relation_name":"is_a","term_name":"monoterpene metabolic process","termid":"GO:0043692"},{"relation_name":"is_a","term_name":"olefin metabolic process","termid":"GO:1900673"},{"relation_name":"is_a","term_name":"organic cyclic compound metabolic process","termid":"GO:1901360"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006629"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006629","GO:0008150"],"is_obsolete":false,"name":"limonene metabolic process","synonyms":[{"name":"limonene metabolism","type":"exact"}],"termid":"GO:0018923"}


id: GO:0031469
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"An organelle found in bacteria consisting of a proteinaceous coat containing metabolic enzymes whose purpose is the sequestration or concentration of metabolites and which has the appearance of a polygonal granule by electron microscopy.","definition_xrefs":["PMID:11844753","PMID:10498708","GOC:js","PMID:12923081","PMID:34058518","PMID:34340100"],"direct_ancestors":[{"relation_name":"is_a","term_name":"intracellular non-membrane-bounded organelle","termid":"GO:0043232"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"bacterial microcompartment","synonyms":[{"name":"BAC","type":"broad"},{"name":"BMC","type":"broad"},{"name":"MCP","type":"broad"},{"name":"polyhedral organelle","type":"related"}],"termid":"GO:0031469"}


id: GO:0008035
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to high-density lipoprotein particle, a lipoprotein particle with a high density (typically 1.063-1.21 g/ml) and a diameter of 5-10 nm that contains APOAs and may contain APOCs and APOE.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"lipoprotein particle binding","termid":"GO:0071813"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0005488"],"is_obsolete":false,"name":"high-density lipoprotein particle binding","synonyms":[{"name":"HDL binding","type":"exact"}],"termid":"GO:0008035"}


id: PBO:0017948
data:
  {"annotation_feature_type":"gene","cv_name":"complementation","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"functionally complemented by S. cerevisiae SEC12","termid":"PBO:0017948"}


id: PBO:0087205
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"S-adenosylmethionine-dependent lysine methyltransferase; involved in the trimethylation of eEF1A (Tef1p/Tef2p) at lysine 79; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm; required for replication of Brome mosaic virus in budding yeast; expresses a circular RNA; originally misclassified as a N-6-adenine specific DNA methyltransferase based on sequence similarity; both Efm5p and human ortholog N6AMT2 can methylate eEF1a from either species in vitro","termid":"PBO:0087205"}


id: GO:0150089
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a synapse between a multiple synapse bouton and one or more dendritic spines.","definition_xrefs":["GOC:bc","PMID:11466428","PMID:22028887","PMID:29774619","PMID:8366344","PMID:10586883","PMID:7482800","PMID:18501438","PMID:11248111","GOC:aruk"],"direct_ancestors":[{"relation_name":"is_a","term_name":"synapse organization","termid":"GO:0050808"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"multiple spine synapse organization","synonyms":[{"name":"multi-synapse organisation","type":"broad"},{"name":"multi-synapse organization","type":"broad"},{"name":"multi-synaptic organisation","type":"broad"},{"name":"multi-synaptic organization","type":"broad"},{"name":"multiple spine synapse organisation","type":"exact"},{"name":"multisynapse organisation","type":"broad"},{"name":"multisynapse organization","type":"broad"},{"name":"multisynaptic organisation","type":"broad"},{"name":"multisynaptic organization","type":"broad"}],"termid":"GO:0150089"}


id: GO:0102091
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: H2O + a 1-phosphatidyl-1D-myo-inositol 5-phosphate = an 1-phosphatidyl-1D-myo-inositol + phosphate.","definition_xrefs":["GOC:pz","PMID:12878591"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phosphatidylinositol monophosphate phosphatase activity","termid":"GO:0052744"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016788"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016787"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016787","GO:0016788"],"is_obsolete":false,"name":"phosphatidylinositol-5-phosphate phosphatase activity","secondary_identifiers":["MetaCyc:RXN-10962"],"synonyms":[{"name":"phosphatidylinositol-5-phosphate 5-phosphatase activity","type":"exact"}],"termid":"GO:0102091"}


id: PBO:0067453
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 577, pseudogene","termid":"PBO:0067453"}


id: GO:0032389
data:
  {"annotated_genes":["SJAG_02187"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[70892],"is_not":false,"summary":null,"term":"GO:0032389"}]},"cv_name":"cellular_component","definition":"A heterodimer involved in the recognition of base-base and small insertion/deletion mismatches. In human the complex consists of two subunits, MLH1 and PMS2.","definition_xrefs":["GOC:vk"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mismatch repair complex","termid":"GO:0032300"},{"relation_name":"is_a","term_name":"nuclear protein-containing complex","termid":"GO:0140513"}],"gene_count":1,"genes_by_uniquename":{"SJAG_02187":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005634"}],"interesting_parent_ids":["GO:0005575","GO:0032991","GO:0005634"],"is_obsolete":false,"name":"MutLalpha complex","references_by_uniquename":{"PMID:21873635":null},"synonyms":[{"name":"MLH1/PMS2 complex","type":"exact"},{"name":"MMR complex","type":"broad"},{"name":"MutL-alpha complex","type":"exact"}],"termid":"GO:0032389","terms_by_termid":{"GO:0032389":null}}


id: GO:0015707
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The directed movement of nitrite into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.","definition_xrefs":["GOC:krc"],"direct_ancestors":[{"relation_name":"is_a","term_name":"inorganic anion transport","termid":"GO:0015698"},{"relation_name":"is_a","term_name":"nitrogen compound transport","termid":"GO:0071705"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0051179"}],"interesting_parent_ids":["GO:0006810","GO:0051179","GO:0008150"],"is_obsolete":false,"name":"nitrite transport","termid":"GO:0015707"}


id: PBO:0072797
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"spalt like transcription factor 4 pseudogene 3","termid":"PBO:0072797"}


id: PBO:0084872
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Mitochondrial ribosomal protein of the small subunit; mitochondrially-encoded; polymorphic in different strains due to variation in number of AAT (asparagine) codons; translated near the mitochondrial inner membrane; may have a role in loss of mitochondrial DNA under stress conditions","termid":"PBO:0084872"}


id: PBO:0089992
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small-subunit processome, UTP-C complex subunit Utp22","termid":"PBO:0089992"}


id: GO:0075091
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process in which the host organism activates, maintains or increases the frequency, rate or extent of the symbiont signal transduction mediated by G-protein alpha subunit. The host is defined as the larger of the organisms involved in a symbiotic interaction.","definition_xrefs":["GOC:pamgo_curators"],"gene_count":0,"genotype_count":0,"name":"obsolete positive regulation by host of symbiont signal transduction mediated by G-protein alpha subunit (obsolete GO:0075091)","termid":"GO:0075091"}


id: PBO:0048894
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"golgin A6 family like 14, pseudogene","termid":"PBO:0048894"}


id: GO:0035804
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"The action of a molecule that contributes to the structural integrity of an egg coat. An egg coat is a specialized extracellular matrix that surrounds the ovum of animals. The egg coat provides structural support and can play an essential role in oogenesis, fertilization and early development.","definition_xrefs":["PMID:16944418","PMID:17163408"],"direct_ancestors":[{"relation_name":"is_a","term_name":"extracellular matrix structural constituent","termid":"GO:0005201"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005198"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0005198","GO:0003674"],"is_obsolete":false,"name":"structural constituent of egg coat","synonyms":[{"name":"structural constituent of vitelline envelope","type":"narrow"},{"name":"structural constituent of zona pellucida","type":"narrow"}],"termid":"GO:0035804"}


id: FYPO:0006286
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A physical cellular phenotype observed in the vegetative growth phase of the life cycle in which cells contain a normal (i.e. indistinguishable from wild type) number of protein complexes consisting of cyclin B1 and cyclin-dependent kinase 1 (CDK1).","definition_xrefs":["PomBase:mah","PMID:7796804"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal cell morphology","termid":"FYPO:0000672"},{"relation_name":"is_a","term_name":"normal level of macromolecular complex","termid":"FYPO:0006235"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0000002","FYPO:0000257"],"is_obsolete":false,"name":"normal cyclin B1-CDK1 complex level","synonyms":[{"name":"cyclin B1-CDK1 complexes present at normal level","type":"exact"},{"name":"normal cyclin B1-CDK1 complex level during mitotic cell cycle","type":"related"},{"name":"normal cyclin B1-CDK1 complex level during vegetative growth","type":"exact"}],"termid":"FYPO:0006286"}


id: GO:0016091
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of prenols, isoprenoids of general formula (H-CH2-C(CH3)=CH-CH2-)n-OH, any primary monohydroxy alcohol whose carbon skeleton consists of two or more isoprenoid residues linked head to tail.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"isoprenoid biosynthetic process","termid":"GO:0008299"},{"relation_name":"is_a","term_name":"prenol metabolic process","termid":"GO:0016090"},{"relation_name":"is_a","term_name":"alcohol biosynthetic process","termid":"GO:0046165"},{"relation_name":"is_a","term_name":"olefinic compound biosynthetic process","termid":"GO:0120255"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006629"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0006629","GO:0044281"],"is_obsolete":false,"name":"prenol biosynthetic process","synonyms":[{"name":"prenol anabolism","type":"exact"},{"name":"prenol biosynthesis","type":"exact"},{"name":"prenol formation","type":"exact"},{"name":"prenol synthesis","type":"exact"}],"termid":"GO:0016091"}


id: PBO:0076759
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"L-threonine dehydrogenase (pseudogene)","termid":"PBO:0076759"}


id: PATO:0001750
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A paedomorphic growth quality which is due to a delayed onset.","definition_xrefs":["PATOC:mh"],"direct_ancestors":[{"relation_name":"is_a","term_name":"paedomorphic growth","termid":"PATO:0001749"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"postdisplaced growth","termid":"PATO:0001750"}


id: GO:0009515
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"Appressed thylakoid membranes that are part of a granum (stacked regions). A characteristic of these appressed regions is the preferential localization of photosystem II.","definition_xrefs":["GOC:lr"],"direct_ancestors":[{"relation_name":"is_a","term_name":"chloroplast thylakoid","termid":"GO:0009534"},{"relation_name":"part_of","term_name":"granum","termid":"GO:0009542"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005737","GO:0005575"],"is_obsolete":false,"name":"granal stacked thylakoid","synonyms":[{"name":"chloroplast stacked thylakoid","type":"exact"}],"termid":"GO:0009515"}


id: PBO:0072493
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein SA pseudogene 22","termid":"PBO:0072493"}


id: PBO:0056618
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MECOM antisense RNA 1","termid":"PBO:0056618"}


id: PBO:0072082
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein S12 pseudogene 12","termid":"PBO:0072082"}


id: PBO:0001424
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"translation elongation regulator Gcn1 (predicted)","termid":"PBO:0001424"}


id: PBO:0005747
data:
  {"annotation_feature_type":"gene","cv_name":"EC numbers","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"1.14.11.-","termid":"PBO:0005747"}


id: GO:0002557
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The regulated release of histamine by a basophil or group of basophils.","definition_xrefs":["ISBN:0781735149","GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"histamine secretion involved in inflammatory response","termid":"GO:0002441"},{"relation_name":"is_a","term_name":"establishment of localization in cell","termid":"GO:0051649"},{"relation_name":"is_a","term_name":"exocytic process","termid":"GO:0140029"},{"relation_name":"part_of","term_name":"basophil degranulation","termid":"GO:0002561"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"part_of","termid":"GO:0016192"},{"rel_name":"part_of","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0006810","GO:0051179","GO:0023052","GO:0016192"],"is_obsolete":false,"name":"histamine secretion by basophil","termid":"GO:0002557"}


id: PBO:0035926
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-bent_cell","termid":"PBO:0035926"}


id: GO:0005955
data:
  {"annotated_genes":["SJAG_03793","SJAG_03631"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[72813,78236],"is_not":false,"summary":null,"term":"GO:0005955"}]},"cv_name":"cellular_component","definition":"A heterodimeric calcium ion and calmodulin dependent protein phosphatase composed of catalytic and regulatory subunits; the regulatory subunit is very similar in sequence to calmodulin.","definition_xrefs":["PMID:26794871"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein serine/threonine phosphatase complex","termid":"GO:0008287"},{"relation_name":"is_a","term_name":"intracellular protein-containing complex","termid":"GO:0140535"}],"gene_count":2,"genes_by_uniquename":{"SJAG_03631":null,"SJAG_03793":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575","GO:0032991"],"is_obsolete":false,"name":"calcineurin complex","references_by_uniquename":{"PMID:21873635":null},"synonyms":[{"name":"calcium-dependent protein serine/threonine phosphatase complex","type":"narrow"},{"name":"protein phosphatase type 2B complex","type":"exact"}],"termid":"GO:0005955","terms_by_termid":{"GO:0005955":null}}


id: GO:0032087
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of a type IV restriction endodeoxyribonuclease activity.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of restriction endodeoxyribonuclease activity","termid":"GO:0032072"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0006259"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006259","GO:0008150"],"is_obsolete":false,"name":"regulation of type IV site-specific deoxyribonuclease activity","synonyms":[{"name":"regulation of type IV restriction endodeoxyribonuclease activity","type":"exact"},{"name":"type IV restriction endodeoxyribonuclease regulator","type":"related"},{"name":"type IV restriction enzyme regulator","type":"related"}],"termid":"GO:0032087"}


id: PBO:0060666
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NDC80 kinetochore complex component","termid":"PBO:0060666"}


id: GO:0047863
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: dimethylallyl diphosphate + isopentenyl diphosphate = diphosphate + neryl diphosphate.","definition_xrefs":["EC:2.5.1.28","RHEA:11328"],"direct_ancestors":[{"relation_name":"is_a","term_name":"prenyltransferase activity","termid":"GO:0004659"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016765"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016740","GO:0003674","GO:0016765","GO:0003824"],"is_obsolete":false,"name":"dimethylallylcistransferase activity","secondary_identifiers":["KEGG_REACTION:R01659","MetaCyc:DIMETHYLALLYLCISTRANSFERASE-RXN"],"synonyms":[{"name":"dimethylallyl-diphosphate:isopentenyl-diphosphate dimethylallylcistransferase activity","type":"related"},{"name":"neryl-diphosphate synthase activity","type":"related"}],"termid":"GO:0047863"}


id: PBO:0056151
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MACC1 antisense RNA 1","termid":"PBO:0056151"}


id: PBO:0049110
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"G protein-coupled receptor 171","termid":"PBO:0049110"}


id: GO:0004452
data:
  {"annotated_genes":["SJAG_04307"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[74464],"is_not":false,"summary":null,"term":"GO:0004452"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: isopentenyl diphosphate = dimethylallyl diphosphate.","definition_xrefs":["RHEA:23284"],"direct_ancestors":[{"relation_name":"is_a","term_name":"intramolecular oxidoreductase activity, transposing C=C bonds","termid":"GO:0016863"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04307":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016853"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016853"],"is_obsolete":false,"name":"isopentenyl-diphosphate delta-isomerase activity","references_by_uniquename":{"PMID:21873635":null},"secondary_identifiers":["MetaCyc:IPPISOM-RXN","KEGG_REACTION:R01123","EC:5.3.3.2","Reactome:R-HSA-191382"],"synonyms":[{"name":"IPP isomerase activity","type":"related"},{"name":"isopentenyl-diphosphate D-isomerase activity","type":"exact"},{"name":"isopentenyl-diphosphate delta3-delta2-isomerase activity","type":"related"},{"name":"isopentenylpyrophosphate delta-isomerase activity","type":"related"},{"name":"isopentenylpyrophosphate isomerase activity","type":"related"},{"name":"methylbutenylpyrophosphate isomerase activity","type":"related"}],"termid":"GO:0004452","terms_by_termid":{"GO:0004452":null}}


id: PR:P00332
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"An alcohol dehydrogenase, propanol-preferring that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO04737","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"alcohol dehydrogenase (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC13B11.01","secondary_identifiers":["UniProtKB:P00332"],"synonyms":[{"name":"Spom972h-adhP","type":"exact"}],"termid":"PR:P00332"}


id: GO:1990787
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that decreases the activity of a transcription factor that activates transcription of Hedgehog-target genes in response to Smoothened signaling. In Drosophila, Cubitus interruptus (Ci) is the only identified transcription factor so far in the Hedgehog signaling pathway. In vertebrates members of the Gli protein family are activated by Hedgehog signaling.","definition_xrefs":["GOC:bhm","PMID:24311597"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of smoothened signaling pathway","termid":"GO:0045879"},{"relation_name":"is_a","term_name":"regulation of DNA-binding transcription factor activity","termid":"GO:0051090"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"negatively_regulates","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0006355"},{"rel_name":"regulates","termid":"GO:0010467"},{"rel_name":"regulates","termid":"GO:0006351"}],"interesting_parent_ids":["GO:0023052","GO:0008150","GO:0006351","GO:0006355","GO:0010467"],"is_obsolete":false,"name":"negative regulation of hh target transcription factor activity","synonyms":[{"name":"negative regulation of hedgehog target transcription factor","type":"exact"}],"termid":"GO:1990787"}


id: GO:0003023
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The series of events by which an increase in diameter of an artery is detected and converted to a molecular signal.","definition_xrefs":["GOC:mtg_cardio"],"direct_ancestors":[{"relation_name":"is_a","term_name":"baroreceptor detection of arterial stretch","termid":"GO:0001981"},{"relation_name":"part_of","term_name":"baroreceptor response to increased systemic arterial blood pressure","termid":"GO:0001983"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"baroreceptor detection of increased arterial stretch","termid":"GO:0003023"}


id: SO:0000477
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A gene that is polycistronic.","definition_xrefs":["SO:ke"],"gene_count":0,"genotype_count":0,"name":"OBSOLETE SO:0000477 polycistronic_gene (obsolete SO:0000477)","termid":"SO:0000477"}


id: PBO:0055386
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2816","termid":"PBO:0055386"}


id: FYPO:0000450
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to the centromere of a chromosome is decreased.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal protein localization to centromere during vegetative growth","termid":"FYPO:0000449"},{"relation_name":"is_a","term_name":"decreased protein localization to chromosome during vegetative growth","termid":"FYPO:0002839"},{"relation_name":"is_a","term_name":"decreased protein localization to centromere","termid":"FYPO:0006238"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000138"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000002","FYPO:0000138","FYPO:0001320","FYPO:0005447"],"is_obsolete":false,"name":"decreased protein localization to centromere during vegetative growth","synonyms":[{"name":"decreased protein localisation to centromere during vegetative growth","type":"exact"},{"name":"decreased protein localisation to chromosome, centromeric region during vegetative growth","type":"exact"},{"name":"decreased protein localization to centromere during mitotic cell cycle","type":"related"},{"name":"decreased protein localization to chromosome, centric region during vegetative growth","type":"exact"},{"name":"decreased protein localization to chromosome, centromeric region during vegetative growth","type":"exact"},{"name":"reduced protein localization to centromere during vegetative growth","type":"exact"}],"termid":"FYPO:0000450"}


id: PBO:0080326
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"vomeronasal 1 receptor 90 pseudogene","termid":"PBO:0080326"}


id: GO:0019123
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The racemization of peptidyl-methionine.","definition_xrefs":["RESID:AA0193"],"direct_ancestors":[{"relation_name":"is_a","term_name":"peptidyl-L-amino acid racemization","termid":"GO:0018085"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006520"}],"interesting_parent_ids":["GO:0006520","GO:0008150"],"is_obsolete":false,"name":"peptidyl-methionine racemization","secondary_identifiers":["GO:0018369","GO:0018087"],"termid":"GO:0019123"}


id: GO:0061882
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of the directed movement of mitochondria along microtubules in axons away from the cell body and towards the presynapse.","definition_xrefs":["PMID:24302729"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of intracellular transport","termid":"GO:0032387"},{"relation_name":"is_a","term_name":"regulation of anterograde axonal transport of mitochondrion","termid":"GO:0061880"},{"relation_name":"negatively_regulates","term_name":"anterograde axonal transport of mitochondrion","termid":"GO:0098957"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"negatively_regulates","termid":"GO:0006810"},{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006810","GO:0008150"],"is_obsolete":false,"name":"negative regulation of anterograde axonal transport of mitochondrion","synonyms":[{"name":"negative regulation of anterograde axon transport of mitochondria","type":"exact"}],"termid":"GO:0061882"}


id: GO:0003034
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which information about the levels of carbon dioxide are received and are converted to a molecular signal by chemoreceptors in an aortic body.","definition_xrefs":["GOC:mtg_cardio"],"direct_ancestors":[{"relation_name":"is_a","term_name":"detection of increased carbon dioxide by chemoreceptor signaling","termid":"GO:0003021"},{"relation_name":"part_of","term_name":"detection of hypoxic conditions in blood by aortic body chemoreceptor signaling","termid":"GO:0003033"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"detection of increased carbon dioxide by aortic body chemoreceptor signaling","synonyms":[{"name":"detection of increased carbon dioxide by aortic body chemoreceptor signalling","type":"exact"}],"termid":"GO:0003034"}


id: PBO:0078911
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-Gln (anticodon TTG) 2-1","termid":"PBO:0078911"}


id: GO:0030636
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The chemical reactions and pathways resulting in the formation of derivatives of acetic acid.","definition_xrefs":["GOC:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete acetate derivative biosynthetic process (obsolete GO:0030636)","synonyms":[{"name":"acetate derivative anabolism","type":"exact"},{"name":"acetate derivative biosynthesis","type":"exact"},{"name":"acetate derivative biosynthetic process","type":"exact"},{"name":"acetate derivative formation","type":"exact"},{"name":"acetate derivative synthesis","type":"exact"}],"termid":"GO:0030636"}


id: PBO:0060733
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NDUFAF2 pseudogene 2","termid":"PBO:0060733"}


id: GO:0140806
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: L-aspartyl-[protein] + NAD+ = 4-O-(ADP-D-ribosyl)-L-aspartyl-[protein] + nicotinamide.","definition_xrefs":["PMID:25043379","RHEA:54424","PMID:19764761"],"direct_ancestors":[{"relation_name":"is_a","term_name":"NAD+-protein ADP-ribosyltransferase activity","termid":"GO:1990404"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0140096"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016757"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016740"}],"interesting_parent_ids":["GO:0140096","GO:0003824","GO:0003674","GO:0016757","GO:0016740"],"is_obsolete":false,"name":"NAD+- protein-aspartate ADP-ribosyltransferase activity","termid":"GO:0140806"}


id: GO:0034060
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The space enclosed by the double membrane of a cyanelle.","definition_xrefs":["GOC:rph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"plastid stroma","termid":"GO:0009532"},{"relation_name":"part_of","term_name":"cyanelle","termid":"GO:0009842"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005737"}],"interesting_parent_ids":["GO:0005575","GO:0005737"],"is_obsolete":false,"name":"cyanelle stroma","termid":"GO:0034060"}


id: PBO:0030385
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_cell_cortex_morphology_during_nitrogen_starvation","termid":"PBO:0030385"}


id: FYPO:0006684
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which an interaction between a protein and RNAs transcribed from the centromeric region is decreased. One of the relevant gene products may be encoded by the mutated gene, or both the RNA and protein may be encoded by genes other than the mutated one.","definition_xrefs":["PMID:19111658","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased protein-RNA interaction","termid":"FYPO:0002134"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0002131"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000707"}],"interesting_parent_ids":["FYPO:0000707","FYPO:0001985","FYPO:0002131","FYPO:0000652"],"is_obsolete":false,"name":"decreased centromeric transcript binding","synonyms":[{"name":"decreased cen transcript binding","type":"exact"},{"name":"decreased centromeric RNA binding","type":"exact"},{"name":"decreased protein-centromeric transcript interaction","type":"exact"},{"name":"reduced centromeric transcript binding","type":"exact"}],"termid":"FYPO:0006684"}


id: GO:0061668
data:
  {"annotated_genes":["SJAG_03773","SJAG_03155"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[103709,107235],"is_not":false,"summary":null,"term":"GO:0061668"}]},"cv_name":"biological_process","definition":"The aggregation, arrangement and bonding together of the mitochondrial ribosome and of its subunits.","definition_xrefs":["GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ribosome assembly","termid":"GO:0042255"}],"gene_count":2,"genes_by_uniquename":{"SJAG_03155":null,"SJAG_03773":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0044085"},{"rel_name":"part_of","termid":"GO:0042254"}],"interesting_parent_ids":["GO:0008150","GO:0044085","GO:0042254"],"is_obsolete":false,"name":"mitochondrial ribosome assembly","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0061668","terms_by_termid":{"GO:0061668":null}}


id: PR:O14327
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A polyadenylate-binding protein 2 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"polyadenylate-binding protein 2 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC16E9.12c","secondary_identifiers":["UniProtKB:O14327"],"synonyms":[{"name":"PABII (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"PABP-2 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"SPBC16E9.12c","type":"related"},{"name":"Spom972h-PABPN1","type":"exact"},{"name":"poly(A)-binding protein 2 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"poly(A)-binding protein II (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:O14327"}


id: PBO:0074957
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nucleolar RNA, C/D box 113-8","termid":"PBO:0074957"}


id: GO:0030989
data:
  {"annotated_genes":["SJAG_02561","SJAG_03673","SJAG_03073","SJAG_02286","SJAG_00140","SJAG_00397","SJAG_01370","SJAG_00368","SJAG_04143","SJAG_02737","SJAG_02045","SJAG_01662","SJAG_01863","SJAG_05185","SJAG_04001","SJAG_00113"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[83523,86656,87027,87473,90773,93106,96193,98381,98665,106306,106649,109154,112058],"is_not":false,"summary":null,"term":"GO:0030989"},{"annotations":[101951,106473],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0032118"},{"annotations":[96898],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:1903563"}]},"cv_name":"biological_process","definition":"Oscillatory movement of the nucleus involved in meiosis I. This oscillatory movement is led by an astral microtubule array emanating from the spindle pole body, and driven by the microtubule motor cytoplasmic dynein.","definition_xrefs":["PMID:16111942","PMID:9572142","GOC:vw"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nuclear migration along microtubule","termid":"GO:0030473"},{"relation_name":"is_a","term_name":"meiotic cell cycle process","termid":"GO:1903046"},{"relation_name":"part_of","term_name":"meiosis I","termid":"GO:0007127"}],"gene_count":16,"genes_by_uniquename":{"SJAG_00113":null,"SJAG_00140":null,"SJAG_00368":null,"SJAG_00397":null,"SJAG_01370":null,"SJAG_01662":null,"SJAG_01863":null,"SJAG_02045":null,"SJAG_02286":null,"SJAG_02561":null,"SJAG_02737":null,"SJAG_03073":null,"SJAG_03673":null,"SJAG_04001":null,"SJAG_04143":null,"SJAG_05185":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0140013"},{"rel_name":"part_of","termid":"GO:0007049"},{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006810","GO:0008150","GO:0007049","GO:0051179","GO:0140013"],"is_obsolete":false,"name":"dynein-driven meiotic oscillatory nuclear movement","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"HNM","type":"exact"},{"name":"horsetail movement","type":"exact"},{"name":"horsetail nuclear movement","type":"exact"}],"termid":"GO:0030989","terms_by_termid":{"GO:0030989":null,"GO:0032118":null,"GO:1903563":null}}


id: PBO:0051848
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"iroquois homeobox 3","termid":"PBO:0051848"}


id: PATO:0001738
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A structural quality inhering in a bearer by virtue of the bearer's lacking physically interaction with another entity.","definition_xrefs":["PATOC:GVG"],"direct_ancestors":[{"relation_name":"is_a","term_name":"structure","termid":"PATO:0000141"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dissociated from","synonyms":[{"name":"dissociated","type":"exact"}],"termid":"PATO:0001738"}


id: PBO:0075893
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 6","termid":"PBO:0075893"}


id: PBO:0005657
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TRAPP complex subunit Trs130 (predicted)","termid":"PBO:0005657"}


id: PBO:0088211
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Small toxic protein; overexpression inhibits ergosterol biosynthesis; not required for normal growth, not conserved in related yeast species including S. paradoxus","termid":"PBO:0088211"}


id: SO:0000407
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"Cytosolic 18S rRNA is an RNA component of the small subunit of cytosolic ribosomes in eukaryotes.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"derives_from","term_name":"cytosolic_rRNA_18S_gene","termid":"SO:0002236"},{"relation_name":"is_a","term_name":"cytosolic_SSU_rRNA","termid":"SO:0000650"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cytosolic_18S_rRNA","secondary_identifiers":["http://en.wikipedia.org/wiki/18S_ribosomal_RNA"],"synonyms":[{"name":"cytosolic 18S rRNA","type":"exact"},{"name":"cytosolic 18S ribosomal RNA","type":"exact"},{"name":"cytosolic rRNA 18S","type":"exact"}],"termid":"SO:0000407"}


id: PR:O14069
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A 60S ribosomal protein L28 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PANTHER:PTHR10544:SF0","OMA:SCHPO00355","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"60S ribosomal protein L28e (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC1687.06c","secondary_identifiers":["UniProtKB:O14069"],"synonyms":[{"name":"Spom972h-RPL28","type":"exact"}],"termid":"PR:O14069"}


id: GO:0070055
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The endonucleolytic cleavage of a mRNA containing an HAC1-type intron at the 5' and 3' splice sites. The cleavage step is part of unconventional mRNA splicing, and contributes to the endoplasmic reticulum unfolded protein response.","definition_xrefs":["GOC:bf","GOC:mah","GOC:krc","PMID:10357823"],"gene_count":0,"genotype_count":0,"name":"obsolete mRNA endonucleolytic cleavage involved in unfolded protein response (obsolete GO:0070055)","synonyms":[{"name":"ERN1-mediated XBP-1 mRNA cleavage","type":"related"},{"name":"HAC1 mRNA cleavage","type":"narrow"},{"name":"HAC1-type intron splice site recognition and cleavage","type":"narrow"},{"name":"IRE1-mediated XBP-1 mRNA cleavage","type":"narrow"},{"name":"XBP1 mRNA cleavage","type":"narrow"}],"termid":"GO:0070055"}


id: PBO:0087666
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Subunit of the inner nuclear membrane Asi ubiquitin ligase complex; the Asi complex targets both misfolded proteins of the inner nuclear membrane-associated degradation (INMAD) pathway and regulators of sterol biosynthesis for ubiquitin-mediated degradation; acts with Asi2p and Asi3p to ensure the fidelity of SPS-sensor signaling by targeting latent unprocessed forms of Stp1p and Stp2p, maintaining the repressed state of gene expression in the absence of inducing amino acids","termid":"PBO:0087666"}


id: GO:0140613
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + Mn2+(in) = ADP + H+ + Mn2+(out) + phosphate.","definition_xrefs":["PMID:21187401","PMID:15831496","PMID:15590060","RHEA:66820","PMID:11134055"],"direct_ancestors":[{"relation_name":"is_a","term_name":"manganese ion transmembrane transporter activity","termid":"GO:0005384"},{"relation_name":"is_a","term_name":"P-type ion transporter activity","termid":"GO:0015662"},{"relation_name":"is_a","term_name":"ATPase-coupled monoatomic cation transmembrane transporter activity","termid":"GO:0019829"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0005215"}],"interesting_parent_ids":["GO:0003674","GO:0022857","GO:0005215"],"is_obsolete":false,"name":"P-type manganese transporter activity","termid":"GO:0140613"}


id: GO:0033434
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"A triplet codon-amino acid adaptor activity that recognizes an AUC codon.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"triplet codon-amino acid adaptor activity","termid":"GO:0030533"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0060090"},{"rel_name":"is_a","termid":"GO:0003723"}],"interesting_parent_ids":["GO:0003674","GO:0003723","GO:0060090","GO:0005488"],"is_obsolete":false,"name":"AUC codon-amino acid adaptor activity","synonyms":[{"name":"ATC codon-amino acid adaptor activity","type":"exact"},{"name":"isoleucine tRNA","type":"related"}],"termid":"GO:0033434"}


id: PATO:0001140
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0001140 immunoglobulin concentration value (obsolete PATO:0001140)","termid":"PATO:0001140"}


id: PBO:0034374
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-transmitted_by","termid":"PBO:0034374"}


id: GO:0046761
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A viral budding that starts with formation of a curvature in the host plasma membrane around which the virion particle assembles.","definition_xrefs":["GOC:bf","VZ:1947","ISBN:0072370319","PMID:9394621"],"direct_ancestors":[{"relation_name":"is_a","term_name":"non-lytic viral release","termid":"GO:0046753"},{"relation_name":"is_a","term_name":"viral budding","termid":"GO:0046755"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"viral budding from plasma membrane","secondary_identifiers":["GO:0046766","GO:0046767"],"synonyms":[{"name":"plasma membrane viral budding","type":"exact"},{"name":"plasma membrane viral budding during viral capsid envelopment","type":"related"},{"name":"viral budding from plasma membrane by viral capsid envelopment","type":"related"},{"name":"viral budding from plasma membrane during viral capsid envelopment","type":"related"},{"name":"virus budding from plasma membrane","type":"exact"},{"name":"virus budding from plasma membrane by viral capsid envelopment","type":"exact"},{"name":"virus budding from plasma membrane during viral capsid envelopment","type":"related"}],"termid":"GO:0046761"}


id: GO:0002503
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The binding of a peptide to the antigen binding groove of an MHC class II protein complex.","definition_xrefs":["GOC:add","PMID:15771591","ISBN:0781735149"],"direct_ancestors":[{"relation_name":"is_a","term_name":"peptide antigen assembly with MHC protein complex","termid":"GO:0002501"},{"relation_name":"part_of","term_name":"MHC class II protein complex assembly","termid":"GO:0002399"},{"relation_name":"part_of","term_name":"antigen processing and presentation of peptide antigen via MHC class II","termid":"GO:0002495"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0065003"},{"rel_name":"is_a","termid":"GO:0065003"},{"rel_name":"part_of","termid":"GO:0044085"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0065003","GO:0044085"],"is_obsolete":false,"name":"peptide antigen assembly with MHC class II protein complex","termid":"GO:0002503"}


id: GO:0032462
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of protein homooligomerization.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of protein oligomerization","termid":"GO:0032459"},{"relation_name":"regulates","term_name":"protein homooligomerization","termid":"GO:0051260"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0065003"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0044085"}],"interesting_parent_ids":["GO:0008150","GO:0065003","GO:0044085"],"is_obsolete":false,"name":"regulation of protein homooligomerization","termid":"GO:0032462"}


id: GO:0090103
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which the cochlea is generated and organized.","definition_xrefs":["GOC:tb","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"embryonic morphogenesis","termid":"GO:0048598"},{"relation_name":"part_of","term_name":"inner ear morphogenesis","termid":"GO:0042472"},{"relation_name":"part_of","term_name":"cochlea development","termid":"GO:0090102"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cochlea morphogenesis","termid":"GO:0090103"}


id: PBO:0083610
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Dubious open reading frame, unlikely to encode a protein; overlaps almost completely with YDL119C; mutations that would affect both YDL118W and YDL119C confer defective telomere maintenance and are synthetically sick or lethal with alpha-synuclein","termid":"PBO:0083610"}


id: GO:0044857
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of plasma membrane rafts.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"membrane raft organization","termid":"GO:0031579"},{"relation_name":"part_of","term_name":"plasma membrane organization","termid":"GO:0007009"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0061024"},{"rel_name":"part_of","termid":"GO:0061024"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0061024"],"is_obsolete":false,"name":"plasma membrane raft organization","termid":"GO:0044857"}


id: PBO:0046995
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"family with sequence similarity 88 member F","termid":"PBO:0046995"}


id: GO:0010206
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Proteolysis of the damaged D1 protein and re-assembly of a new D1 subunit in the photosystem II following photoinhibition.","definition_xrefs":["GOC:sm"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein repair","termid":"GO:0030091"},{"relation_name":"part_of","term_name":"photosynthesis, light harvesting","termid":"GO:0009765"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0006091"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006091","GO:0008150"],"is_obsolete":false,"name":"photosystem II repair","termid":"GO:0010206"}


id: GO:0015767
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The directed movement of lactose into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Lactose is a disaccharide 4-O-beta-D-galactopyranosyl-D-glucose, and constitutes roughly 5% of the milk in almost all mammals.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"disaccharide transport","termid":"GO:0015766"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0006810","GO:0008150","GO:0051179"],"is_obsolete":false,"name":"lactose transport","termid":"GO:0015767"}


id: PBO:0061707
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nuclear transport factor 2 pseudogene 2","termid":"PBO:0061707"}


id: PBO:0053596
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 623","termid":"PBO:0053596"}


id: PBO:0083645
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Elongation factor 2 (EF-2), also encoded by EFT1; catalyzes ribosomal translocation during protein synthesis; contains diphthamide, the unique posttranslationally modified histidine residue specifically ADP-ribosylated by diphtheria toxin; EFT2 has a paralog, EFT1, that arose from the whole genome duplication","termid":"PBO:0083645"}


id: PBO:0005503
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"S. pombe specific multicopy membrane protein family 1","termid":"PBO:0005503"}


id: GO:0052331
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The cytolytic destruction of red blood cells, with the release of intracellular hemoglobin, in one organism by another, where two organisms are in a symbiotic interaction.","definition_xrefs":["UniProtKB-KW:KW-0354","GOC:add"],"gene_count":0,"genotype_count":0,"name":"obsolete hemolysis in other organism involved in symbiotic interaction (obsolete GO:0052331)","synonyms":[{"name":"haemolysis in other organism involved in symbiotic interaction","type":"exact"},{"name":"hemolysin activity","type":"related"},{"name":"hemolysis by organism of RBCs in other organism during symbiotic interaction","type":"related"},{"name":"hemolysis by organism of erythrocytes in other organism during symbiotic interaction","type":"related"},{"name":"hemolysis by organism of red blood cells in other organism during symbiotic interaction","type":"related"},{"name":"hemolysis of cells in other organism during symbiotic interaction","type":"related"},{"name":"hemolysis of cells in other organism involved in symbiotic interaction","type":"exact"}],"termid":"GO:0052331"}


id: PBO:0056037
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"latent transforming growth factor beta binding protein 2","termid":"PBO:0056037"}


id: PBO:0070542
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L7a pseudogene 8","termid":"PBO:0070542"}


id: PBO:0017825
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microtubule-site clamp monopolin complex subunit Csm1/Pcs1","termid":"PBO:0017825"}


id: PBO:0001241
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"metallopeptidase Oma1 (predicted)","termid":"PBO:0001241"}


id: PBO:0045046
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DKKL1 pseudogene 1","termid":"PBO:0045046"}


id: FYPO:0003393
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A metabolism phenotype observed in the vegetative growth phase of the life cycle in which electron transport involved in cellular respiration is abnormal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal cellular respiration","termid":"FYPO:0000078"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0000002","FYPO:0001320","FYPO:0001985"],"is_obsolete":false,"name":"abnormal respiratory electron transport","synonyms":[{"name":"abnormal respiratory electron transport chain","type":"exact"},{"name":"abnormal respiratory electron transport during mitotic cell cycle","type":"related"},{"name":"abnormal respiratory electron transport process during vegetative growth","type":"exact"}],"termid":"FYPO:0003393"}


id: PBO:0088186
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Zinc-finger protein; involved in transcriptional control of both nuclear and mitochondrial genes, many of which specify products required for glycerol-based growth, respiration, and other functions; RSF2 has a paralog, TDA9, that arose from the whole genome duplication; relocalizes from nucleus to cytoplasm upon DNA replication stress","termid":"PBO:0088186"}


id: GO:0050445
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 3-mercapto-2-mercaptomethylpropanoate + NAD+ = asparagusate + H+ + NADH.","definition_xrefs":["RHEA:14881"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on a sulfur group of donors, NAD(P) as acceptor","termid":"GO:0016668"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016491","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"asparagusate reductase activity","secondary_identifiers":["MetaCyc:ASPARAGUSATE-REDUCTASE-NADH-RXN","EC:1.8.1.11","KEGG_REACTION:R03761"],"synonyms":[{"name":"3-mercapto-2-mercaptomethylpropanoate:NAD+ oxidoreductase activity","type":"related"},{"name":"NADH2:asparagusate oxidoreductase activity","type":"related"},{"name":"NADH:asparagusate oxidoreductase activity","type":"related"},{"name":"asparagusate dehydrogenase activity","type":"related"},{"name":"asparagusate reductase (NADH) activity","type":"exact"},{"name":"asparagusate reductase (NADH2)","type":"related"},{"name":"asparagusic dehydrogenase activity","type":"related"}],"termid":"GO:0050445"}


id: PBO:0087399
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Stress-inducible dual-specificity MAP kinase phosphatase; negatively regulates Slt2p MAP kinase by direct dephosphorylation, diffuse localization under normal conditions shifts to punctate localization after heat shock; SDP1 has a paralog, MSG5, that arose from the whole genome duplication","termid":"PBO:0087399"}


id: GO:0070122
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the hydrolysis of an isopeptide bond. An isopeptide bond is an amide linkage between a carboxyl group of one amino acid and an amino group of another amino acid in which at least one of these groups is not on the a-carbon of one of the amino acids (for example, the link between an epsilon-amino group of a lysine molecule to a carboxyl group on a second amino acid is an isopeptide bond).","definition_xrefs":["Wikipedia:Isopeptidase","GOC:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete isopeptidase activity (obsolete GO:0070122)","termid":"GO:0070122"}


id: MOD:01253
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"modification from Unimod Chemical derivative - Malondialdehyde (MDA) adduct","definition_xrefs":["Unimod:319#K"],"direct_ancestors":[{"relation_name":"is_a","term_name":"C3-H2-O adduct (+54 amu) of malondialdehyde with lysine or methylglyoxal with arginine.","termid":"MOD:00630"},{"relation_name":"is_a","term_name":"modified L-lysine residue","termid":"MOD:00912"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"malondialdehyde lysine adduct (+54 amu)","synonyms":[{"name":"Delta:H(2)C(3)O(1)","type":"related"},{"name":"MDA adduct +54","type":"related"}],"termid":"MOD:01253"}


id: MOD:01503
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively replaces an N'-hydrogen atom of a histidine residue with the Applied Biosystems iTRAQ4plex-116 reporter+balance group.","definition_xrefs":["PubMed:18688235"],"direct_ancestors":[{"relation_name":"is_a","term_name":"modified L-histidine residue","termid":"MOD:00909"},{"relation_name":"is_a","term_name":"iTRAQ4plex-116 reporter+balance reagent acylated residue","termid":"MOD:01499"},{"relation_name":"is_a","term_name":"iTRAQ4plex reporter+balance reagent N-acylated residue","termid":"MOD:01709"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:00649"}],"interesting_parent_ids":["MOD:00649"],"is_obsolete":false,"name":"iTRAQ4plex-116 reporter+balance reagent N'-acylated histidine","synonyms":[{"name":"(4-methylpiperazin-1-yl)acetyl","type":"exact"},{"name":"iTRAQ4plex","type":"related"}],"termid":"MOD:01503"}


id: PBO:0072098
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein S12 pseudogene 29","termid":"PBO:0072098"}


id: PBO:0034382
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-in_many_to_many_orthology_relationship_with","termid":"PBO:0034382"}


id: PBO:0035996
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-elongated_mononucleate_aseptate_vegetative_cell","termid":"PBO:0035996"}


id: FYPO:0004042
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which a cell forms pieces of a septum rather than a septum that completely bisects the cell.","definition_xrefs":["PomBase:mah","PMID:21931816"],"direct_ancestors":[{"relation_name":"is_a","term_name":"incomplete septum","termid":"FYPO:0005870"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0000032"},{"rel_name":"output_of","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0000032","FYPO:0001320","FYPO:0000631","FYPO:0000002","FYPO:0005447","FYPO:0001985"],"is_obsolete":false,"name":"fragmented septum","synonyms":[{"name":"fragmented septum during mitotic cell cycle","type":"related"},{"name":"fragmented septum during vegetative growth","type":"exact"}],"termid":"FYPO:0004042"}


id: PATO:0001682
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A physical quality inhering in a bearer by virtue of the bearer's disposition to exert an attractive or repulsive force on other entities.","definition_xrefs":["Wikipedia:http://en.wikipedia.org/wiki/Magnetism"],"direct_ancestors":[{"relation_name":"is_a","term_name":"physical quality","termid":"PATO:0001018"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"magnetism","termid":"PATO:0001682"}


id: GO:1900737
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of phospholipase C-activating G protein-coupled receptor signaling pathway.","definition_xrefs":["GOC:TermGenie","GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of G protein-coupled receptor signaling pathway","termid":"GO:0045744"},{"relation_name":"is_a","term_name":"regulation of phospholipase C-activating G protein-coupled receptor signaling pathway","termid":"GO:1900736"},{"relation_name":"negatively_regulates","term_name":"phospholipase C-activating G protein-coupled receptor signaling pathway","termid":"GO:0007200"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"negatively_regulates","termid":"GO:0023052"},{"rel_name":"regulates","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"negative regulation of phospholipase C-activating G protein-coupled receptor signaling pathway","synonyms":[{"name":"down regulation of G protein signaling, coupled to IP3 second messenger (phospholipase C activating)","type":"exact"},{"name":"down regulation of G protein signalling, coupled to IP3 second messenger (phospholipase C activating)","type":"exact"},{"name":"down regulation of G-protein coupled receptor signaling pathway coupled to IP3 second messenger","type":"exact"},{"name":"down regulation of G-protein signaling, coupled to IP3 second messenger (phospholipase C activating)","type":"exact"},{"name":"down regulation of G-protein signalling, coupled to IP3 second messenger (phospholipase C activating)","type":"exact"},{"name":"down regulation of PLC-activating GPCR signaling pathway","type":"exact"},{"name":"down regulation of activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger","type":"related"},{"name":"down regulation of phospholipase C-activating G-protein coupled receptor signaling pathway","type":"exact"},{"name":"down regulation of phospholipase C-activating dopamine receptor signaling pathway","type":"narrow"},{"name":"down-regulation of G protein signaling, coupled to IP3 second messenger (phospholipase C activating)","type":"exact"},{"name":"down-regulation of G protein signalling, coupled to IP3 second messenger (phospholipase C activating)","type":"exact"},{"name":"down-regulation of G-protein coupled receptor signaling pathway coupled to IP3 second messenger","type":"exact"},{"name":"down-regulation of G-protein signaling, coupled to IP3 second messenger (phospholipase C activating)","type":"exact"},{"name":"down-regulation of G-protein signalling, coupled to IP3 second messenger (phospholipase C activating)","type":"exact"},{"name":"down-regulation of PLC-activating GPCR signaling pathway","type":"exact"},{"name":"down-regulation of activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger","type":"related"},{"name":"down-regulation of phospholipase C-activating G-protein coupled receptor signaling pathway","type":"exact"},{"name":"down-regulation of phospholipase C-activating dopamine receptor signaling pathway","type":"narrow"},{"name":"downregulation of G protein signaling, coupled to IP3 second messenger (phospholipase C activating)","type":"exact"},{"name":"downregulation of G protein signalling, coupled to IP3 second messenger (phospholipase C activating)","type":"exact"},{"name":"downregulation of G-protein coupled receptor signaling pathway coupled to IP3 second messenger","type":"exact"},{"name":"downregulation of G-protein signaling, coupled to IP3 second messenger (phospholipase C activating)","type":"exact"},{"name":"downregulation of G-protein signalling, coupled to IP3 second messenger (phospholipase C activating)","type":"exact"},{"name":"downregulation of PLC-activating GPCR signaling pathway","type":"exact"},{"name":"downregulation of activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger","type":"related"},{"name":"downregulation of phospholipase C-activating G-protein coupled receptor signaling pathway","type":"exact"},{"name":"downregulation of phospholipase C-activating dopamine receptor signaling pathway","type":"narrow"},{"name":"inhibition of G protein signaling, coupled to IP3 second messenger (phospholipase C activating)","type":"exact"},{"name":"inhibition of G protein signalling, coupled to IP3 second messenger (phospholipase C activating)","type":"exact"},{"name":"inhibition of G-protein coupled receptor signaling pathway coupled to IP3 second messenger","type":"exact"},{"name":"inhibition of G-protein signaling, coupled to IP3 second messenger (phospholipase C activating)","type":"exact"},{"name":"inhibition of G-protein signalling, coupled to IP3 second messenger (phospholipase C activating)","type":"exact"},{"name":"inhibition of PLC-activating GPCR signaling pathway","type":"exact"},{"name":"inhibition of activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger","type":"related"},{"name":"inhibition of phospholipase C-activating G-protein coupled receptor signaling pathway","type":"narrow"},{"name":"inhibition of phospholipase C-activating dopamine receptor signaling pathway","type":"narrow"},{"name":"negative regulation of G protein signaling, coupled to IP3 second messenger (phospholipase C activating)","type":"exact"},{"name":"negative regulation of G protein signalling, coupled to IP3 second messenger (phospholipase C activating)","type":"exact"},{"name":"negative regulation of G-protein coupled receptor signaling pathway coupled to IP3 second messenger","type":"exact"},{"name":"negative regulation of G-protein signaling, coupled to IP3 second messenger (phospholipase C activating)","type":"exact"},{"name":"negative regulation of G-protein signalling, coupled to IP3 second messenger (phospholipase C activating)","type":"exact"},{"name":"negative regulation of PLC-activating GPCR signaling pathway","type":"exact"},{"name":"negative regulation of activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger","type":"related"},{"name":"negative regulation of phospholipase C-activating G-protein coupled receptor signaling pathway","type":"exact"},{"name":"negative regulation of phospholipase C-activating dopamine receptor signaling pathway","type":"narrow"}],"termid":"GO:1900737"}


id: GO:1990775
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The appearance of a endothelin due to biosynthesis or secretion following a cellular stimulus, resulting in an increase in its intracellular or extracellular levels. Endothelins are endothelium-derived vasoactive peptides involved in a variety of biological functions.","definition_xrefs":["PMID:15560120"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cytokine production","termid":"GO:0001816"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0010467","GO:0008150"],"is_obsolete":false,"name":"endothelin production","synonyms":[{"name":"EDN1 production","type":"narrow"},{"name":"EDN2 production","type":"narrow"},{"name":"EDN3 production","type":"narrow"},{"name":"endothelin secretion","type":"narrow"},{"name":"endothelin-1 secretion","type":"narrow"},{"name":"endothelin-2 production","type":"narrow"},{"name":"endothelin-3 production","type":"narrow"}],"termid":"GO:1990775"}


id: PR:Q9UTG8
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- dad2 gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q9UTG8"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DASH complex subunit dad2 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC1805.07c","synonyms":[{"name":"Spom972h-dad2","type":"exact"},{"name":"high osmolarity sensitivity protein 2 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"outer kinetochore protein dad2 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:Q9UTG8"}


id: PBO:0072916
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"scavenger receptor class B member 1","termid":"PBO:0072916"}


id: PBO:0012600
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"frataxin","termid":"PBO:0012600"}


id: PBO:0071819
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein S2 pseudogene 14","termid":"PBO:0071819"}


id: PBO:0091039
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"F1-FO ATP synthase subunit F","termid":"PBO:0091039"}


id: PBO:0005424
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Smc5-6 complex non-SMC subunit Nse3","termid":"PBO:0005424"}


id: PBO:0048523
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"GDP-D-glucose phosphorylase 1","termid":"PBO:0048523"}


id: GO:0043871
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: delta1-piperideine-6-carboxylate + NAD+ + 2 H2O = 2-aminoadipate + NADH + H+. Delta1-piperideine-6-carboxylate is also known as 2,3,4,5-tetrahydropyridine-2-carboxylate.","definition_xrefs":["PMID:16237033","MetaCyc:RXN-8162"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity","termid":"GO:0016491"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0003674","GO:0016491","GO:0003824"],"is_obsolete":false,"name":"delta1-piperideine-6-carboxylate dehydrogenase activity","secondary_identifiers":["RHEA:49476"],"synonyms":[{"name":"AmaB","type":"related"},{"name":"PIPOX","type":"related"}],"termid":"GO:0043871"}


id: PBO:0029051
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_protein_degradation_during_vegetative_growth","termid":"PBO:0029051"}


id: PBO:0049173
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"growth factor receptor bound protein 2","termid":"PBO:0049173"}


id: PBO:0012582
data:
  {"annotation_feature_type":"gene","cv_name":"name_description","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Cell Wall Lysis","termid":"PBO:0012582"}


id: GO:0016926
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which a SUMO protein (small ubiquitin-related modifier) is cleaved from its target protein.","definition_xrefs":["GOC:jl","PMID:11265250"],"direct_ancestors":[{"relation_name":"is_a","term_name":"peptidyl-lysine modification","termid":"GO:0018205"},{"relation_name":"is_a","term_name":"protein modification by small protein removal","termid":"GO:0070646"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0070647"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0070647"],"is_obsolete":false,"name":"protein desumoylation","secondary_identifiers":["GO:0016928"],"synonyms":[{"name":"desumoylation","type":"exact"},{"name":"protein desumolation","type":"exact"}],"termid":"GO:0016926"}


id: PBO:0042193
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cyclin D3","termid":"PBO:0042193"}


id: PBO:0089254
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"siroheme synthase Met8","termid":"PBO:0089254"}


id: PBO:0074883
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nucleolar RNA, C/D box 62A","termid":"PBO:0074883"}


id: PATO:0001261
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A color consisting of red hue and low brightness.","definition_xrefs":["PATOC:GVG"],"direct_ancestors":[{"relation_name":"is_a","term_name":"red","termid":"PATO:0000322"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dark red","termid":"PATO:0001261"}


id: GO:1990671
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The joining of the lipid bilayer membrane around a vesicle to the lipid bilayer membrane around the Golgi medial cisterna. This can involve anterograde or retrograde transport vesicles.","definition_xrefs":["PMID:16038056","PMID:24119662","GOC:bhm"],"direct_ancestors":[{"relation_name":"is_a","term_name":"vesicle fusion with Golgi apparatus","termid":"GO:0048280"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0061024"},{"rel_name":"part_of","termid":"GO:0016192"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0016192","GO:0008150","GO:0006810","GO:0061024"],"is_obsolete":false,"name":"vesicle fusion with Golgi medial cisterna membrane","termid":"GO:1990671"}


id: PBO:0087386
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Sterol transporter that transfers sterols between membranes; may regulate and coordinate formation of contact sites between organelles; localizes to ER-mitochondrial contact sites in a Tom70p- and Tom71p-dependent manner; mitochondrial localization requires GRAM domain; also localizes to ER-vacuole contact sites, in a Vac8p-dependent manner; has GRAM and StART-like (VASt) domains; one of six StART-like domain-containing proteins in yeast; conserved across eukaryotes","termid":"PBO:0087386"}


id: GO:0086007
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Enables the transmembrane transfer of a calcium ion by a voltage-gated channel across the plasma membrane of a cardiac muscle cell that contributes to the depolarization phase of an action potential. A voltage-gated channel is a channel whose open state is dependent on the voltage across the membrane in which it is embedded.","definition_xrefs":["GOC:mtg_cardiac_conduct_nov11","GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"voltage-gated calcium channel activity","termid":"GO:0005245"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0022857"}],"interesting_parent_ids":["GO:0022857","GO:0003674","GO:0005215"],"is_obsolete":false,"name":"voltage-gated calcium channel activity involved in cardiac muscle cell action potential","termid":"GO:0086007"}


id: PBO:0031569
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_duration_of_septation","termid":"PBO:0031569"}


id: PBO:0088954
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cytoplasmic proline-tRNA ligase Prs1","termid":"PBO:0088954"}


id: GO:0070665
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of leukocyte proliferation.","definition_xrefs":["GOC:mah","GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of cell population proliferation","termid":"GO:0008284"},{"relation_name":"is_a","term_name":"regulation of leukocyte proliferation","termid":"GO:0070663"},{"relation_name":"positively_regulates","term_name":"leukocyte proliferation","termid":"GO:0070661"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of leukocyte proliferation","synonyms":[{"name":"activation of leukocyte proliferation","type":"narrow"},{"name":"stimulation of leukocyte proliferation","type":"narrow"},{"name":"up regulation of leukocyte proliferation","type":"exact"},{"name":"up-regulation of leukocyte proliferation","type":"exact"},{"name":"upregulation of leukocyte proliferation","type":"exact"}],"termid":"GO:0070665"}


id: PBO:0029981
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-elongated_mononucleate_monoseptate_vegetative_cell","termid":"PBO:0029981"}


id: PBO:0001418
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chromodomain protein Chp1","termid":"PBO:0001418"}


id: PBO:0091142
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial alpha-ketoglutarate dehydrogenase Ymr1 (predicted)","termid":"PBO:0091142"}


id: FYPO:0005690
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which equatorial microtubule organizing center (eMTOC) assembly is abnormal. eMTOC assembly is the aggregation, arrangement and bonding together of a set of components to form an equatorial microtubule organizing center.","definition_xrefs":["GO:1904185","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal microtubule cytoskeleton organization during vegetative growth","termid":"FYPO:0001350"},{"relation_name":"is_a","term_name":"abnormal cellular component assembly during vegetative growth","termid":"FYPO:0001354"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000054"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0005447","FYPO:0001985","FYPO:0001320","FYPO:0000054"],"is_obsolete":false,"name":"abnormal eMTOC assembly","synonyms":[{"name":"abnormal eMTOC assembly during mitotic cell cycle","type":"related"},{"name":"abnormal eMTOC assembly during vegetative growth","type":"exact"},{"name":"abnormal eMTOC formation","type":"exact"},{"name":"abnormal equatorial microtubule organizing center assembly","type":"exact"},{"name":"abnormal equatorial microtubule organizing center formation","type":"exact"}],"termid":"FYPO:0005690"}


id: PR:O74529
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPCC70.08c gene.","definition_xrefs":["UniProtKB:O74529","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized methyltransferase C70.08c (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC70.08c","synonyms":[{"name":"Spom972h-SPCC70.08c","type":"exact"}],"termid":"PR:O74529"}


id: PBO:0000359
data:
  {"annotation_feature_type":"gene","cv_name":"genome_org","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"antisense transcript detected","termid":"PBO:0000359"}


id: GO:1904983
data:
  {"annotated_genes":["SJAG_00626","SJAG_04984"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[93744,95715],"is_not":false,"summary":null,"term":"GO:1904983"}]},"cv_name":"biological_process","definition":"The process in which glycine is transported from the cytosol into the mitochondrial matrix.","definition_xrefs":["GO_REF:0000078","GOC:TermGenie","PMID:26821380"],"direct_ancestors":[{"relation_name":"is_a","term_name":"glycine transport","termid":"GO:0015816"},{"relation_name":"is_a","term_name":"import into the mitochondrion","termid":"GO:0170036"},{"relation_name":"is_a","term_name":"L-alpha-amino acid transmembrane transport","termid":"GO:1902475"}],"gene_count":2,"genes_by_uniquename":{"SJAG_00626":null,"SJAG_04984":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0055085"},{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0055085","GO:0051179","GO:0008150","GO:0006810"],"is_obsolete":false,"name":"glycine import into mitochondrion","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"transmembrane glycine transport from cytosol to mitochondrion","type":"exact"}],"termid":"GO:1904983","terms_by_termid":{"GO:1904983":null}}


id: PBO:0068109
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 5S ribosomal pseudogene 416","termid":"PBO:0068109"}


id: GO:0019503
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of stachydrine, N-methylproline methylbetaine, the betaine derivative of L-proline.","definition_xrefs":["GOC:ai","PMID:14367364"],"direct_ancestors":[{"relation_name":"is_a","term_name":"amino-acid betaine biosynthetic process","termid":"GO:0006578"},{"relation_name":"is_a","term_name":"alkaloid biosynthetic process","termid":"GO:0009821"},{"relation_name":"is_a","term_name":"L-proline betaine metabolic process","termid":"GO:0019502"},{"relation_name":"is_a","term_name":"L-amino acid biosynthetic process","termid":"GO:0170034"},{"relation_name":"is_a","term_name":"non-proteinogenic amino acid biosynthetic process","termid":"GO:0170043"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006520"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0019748"}],"interesting_parent_ids":["GO:0006520","GO:0044281","GO:0008150","GO:0019748"],"is_obsolete":false,"name":"L-proline betaine biosynthetic process","synonyms":[{"name":"stachydrine anabolism","type":"exact"},{"name":"stachydrine biosynthesis","type":"exact"},{"name":"stachydrine biosynthetic process","type":"exact"},{"name":"stachydrine formation","type":"exact"},{"name":"stachydrine synthesis","type":"exact"}],"termid":"GO:0019503"}


id: PBO:0061351
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nucleophosmin 1 pseudogene 9","termid":"PBO:0061351"}


id: PBO:0044022
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"casein kinase 2 alpha 1","termid":"PBO:0044022"}


id: GO:0010690
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that decreases the frequency, rate or extent of the synthesis of RNA from ribosomal protein genes by RNA polymerase II, originating at an RNA polymerase II promoter, as a result of a disturbance in organismal or cellular homeostasis.","definition_xrefs":["GOC:dph","GOC:txnOH","GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of ribosomal protein gene transcription by RNA polymerase II","termid":"GO:0010688"},{"relation_name":"is_a","term_name":"cellular response to stress","termid":"GO:0033554"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0006351"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0010467"},{"rel_name":"negatively_regulates","termid":"GO:0006351"},{"rel_name":"is_a","termid":"GO:0006355"}],"interesting_parent_ids":["GO:0006351","GO:0006355","GO:0008150","GO:0010467"],"is_obsolete":false,"name":"negative regulation of ribosomal protein gene transcription from RNA polymerase II promoter in response to stress","termid":"GO:0010690"}


id: PR:Q9USL5
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein pelota that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PANTHER:PTHR10853:SF0","OMA:SCHPO04428","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protein dom34 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC18B5.06","secondary_identifiers":["UniProtKB:Q9USL5"],"synonyms":[{"name":"Spom972h-PELO","type":"exact"}],"termid":"PR:Q9USL5"}


id: GO:0045522
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to an interleukin-26 receptor.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cytokine receptor binding","termid":"GO:0005126"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005515"},{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0005515","GO:0005488"],"is_obsolete":false,"name":"interleukin-26 receptor binding","synonyms":[{"name":"IL-26","type":"narrow"},{"name":"interleukin-26 receptor ligand","type":"narrow"}],"termid":"GO:0045522"}


id: PBO:0067614
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 786, pseudogene","termid":"PBO:0067614"}


id: GO:0001216
data:
  {"annotated_genes":["SJAG_01062","SJAG_03538","SJAG_03143","SJAG_03346","SJAG_04712","SJAG_04009","SJAG_00210","SJAG_03879","SJAG_00266","SJAG_01583","SJAG_04388","SJAG_01694","SJAG_00698","SJAG_05288","SJAG_04249","SJAG_00163","SJAG_05153","SJAG_03484","SJAG_04749","SJAG_01307","SJAG_01916","SJAG_00693","SJAG_02326","SJAG_02311","SJAG_03735","SJAG_02810","SJAG_00802","SJAG_03519","SJAG_02406","SJAG_00987","SJAG_03241","SJAG_05247","SJAG_03183","SJAG_04092","SJAG_01243","SJAG_04036","SJAG_04855","SJAG_02472","SJAG_04839","SJAG_02730","SJAG_02218","SJAG_02252","SJAG_04813"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[104659],"is_not":false,"summary":null,"term":"GO:0001216"},{"annotations":[93943,103313,107128,89316,113135,95286,109762,93637,105998,84520,88372,104357,83788,112582,85176,92837,111218,102407,87549,74950,83719,91836,107169,101205,108892,84203,94988,83358,104121,78293,91261,99847,104493,109282,88899,111607,95966,84762,102928,97713,101475,78697],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0001228"}]},"cv_name":"molecular_function","definition":"A DNA-binding transcription factor activity that activates or increases transcription of specific gene sets.","definition_xrefs":["GOC:txnOH-2018"],"direct_ancestors":[{"relation_name":"is_a","term_name":"DNA-binding transcription factor activity","termid":"GO:0003700"}],"gene_count":43,"genes_by_uniquename":{"SJAG_00163":null,"SJAG_00210":null,"SJAG_00266":null,"SJAG_00693":null,"SJAG_00698":null,"SJAG_00802":null,"SJAG_00987":null,"SJAG_01062":null,"SJAG_01243":null,"SJAG_01307":null,"SJAG_01583":null,"SJAG_01694":null,"SJAG_01916":null,"SJAG_02218":null,"SJAG_02252":null,"SJAG_02311":null,"SJAG_02326":null,"SJAG_02406":null,"SJAG_02472":null,"SJAG_02730":null,"SJAG_02810":null,"SJAG_03143":null,"SJAG_03183":null,"SJAG_03241":null,"SJAG_03346":null,"SJAG_03484":null,"SJAG_03519":null,"SJAG_03538":null,"SJAG_03735":null,"SJAG_03879":null,"SJAG_04009":null,"SJAG_04036":null,"SJAG_04092":null,"SJAG_04249":null,"SJAG_04388":null,"SJAG_04712":null,"SJAG_04749":null,"SJAG_04813":null,"SJAG_04839":null,"SJAG_04855":null,"SJAG_05153":null,"SJAG_05247":null,"SJAG_05288":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0140110"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003700"}],"interesting_parent_ids":["GO:0003700","GO:0140110","GO:0003674"],"is_obsolete":false,"name":"DNA-binding transcription activator activity","references_by_uniquename":{"GO_REF:0000107":null,"PMID:21873635":null},"secondary_identifiers":["GO:0001215","GO:0001140"],"synonyms":[{"name":"bacterial-type RNA polymerase core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription","type":"related"},{"name":"bacterial-type RNA polymerase transcriptional activator activity, metal ion regulated sequence-specific DNA binding","type":"narrow"},{"name":"bacterial-type RNA polymerase transcriptional activator activity, sequence-specific DNA binding","type":"narrow"},{"name":"metal ion regulated sequence-specific DNA binding bacterial-type RNA polymerase transcription factor activity involved in positive regulation of transcription","type":"narrow"},{"name":"sequence-specific DNA binding bacterial-type RNA polymerase transcription factor activity involved in positive regulation of transcription","type":"narrow"},{"name":"transcriptional activator activity, bacterial-type RNA polymerase core promoter proximal region sequence-specific binding","type":"narrow"},{"name":"transcriptional activator activity, bacterial-type RNA polymerase proximal promoter sequence-specific DNA binding","type":"related"}],"termid":"GO:0001216","terms_by_termid":{"GO:0001216":null,"GO:0001228":null}}


id: PBO:0050210
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"high mobility group nucleosome binding domain 1 pseudogene 27","termid":"PBO:0050210"}


id: PBO:0046198
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"elongin A3 family member B, pseudogene","termid":"PBO:0046198"}


id: PBO:0002442
data:
  {"annotation_feature_type":"gene","cv_name":"EC numbers","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"2.3.1.50","termid":"PBO:0002442"}


id: GO:0072376
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A sequential series of modifications to a set of proteins where the product of one reaction catalyzes the following reaction, ultimately leading to the generation of a mature protein. Modifications typically include proteolysis or covalent modification, and may also include binding events.","definition_xrefs":["GOC:add","GOC:mah","GOC:pde"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein maturation","termid":"GO:0051604"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0051604"}],"interesting_parent_ids":["GO:0051604","GO:0008150","GO:0010467"],"is_obsolete":false,"name":"protein activation cascade","synonyms":[{"name":"protein activation pathway","type":"exact"},{"name":"protein activitory cascade","type":"exact"}],"termid":"GO:0072376"}


id: PBO:0040213
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ATPase family AAA domain containing 1","termid":"PBO:0040213"}


id: FYPO:0004547
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to the mitochondrion is increased.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal protein localization to mitochondrion","termid":"FYPO:0004336"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000138"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0000002","FYPO:0000138","FYPO:0001985","FYPO:0001320"],"is_obsolete":false,"name":"increased protein localization to mitochondrion","synonyms":[{"name":"increased protein localisation to mitochondrion","type":"exact"},{"name":"increased protein localization to mitochondrion during mitotic cell cycle","type":"related"},{"name":"increased protein localization to mitochondrion during vegetative growth","type":"exact"}],"termid":"FYPO:0004547"}


id: GO:0071635
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate, or extent of production of transforming growth factor-beta.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of cytokine production","termid":"GO:0001818"},{"relation_name":"is_a","term_name":"regulation of transforming growth factor beta production","termid":"GO:0071634"},{"relation_name":"negatively_regulates","term_name":"transforming growth factor beta production","termid":"GO:0071604"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"negatively_regulates","termid":"GO:0010467"},{"rel_name":"regulates","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0010467","GO:0008150"],"is_obsolete":false,"name":"negative regulation of transforming growth factor beta production","secondary_identifiers":["GO:2001202"],"synonyms":[{"name":"negative regulation of TGF-B production","type":"exact"},{"name":"negative regulation of TGF-beta production","type":"exact"},{"name":"negative regulation of TGFB production","type":"exact"},{"name":"negative regulation of TGFbeta production","type":"exact"},{"name":"negative regulation of transforming growth factor-beta production","type":"exact"},{"name":"negative regulation of transforming growth factor-beta secretion","type":"narrow"}],"termid":"GO:0071635"}


id: PBO:0069914
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 1206, pseudogene","termid":"PBO:0069914"}


id: GO:0008829
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: dCTP + H2O = dUTP + NH3.","definition_xrefs":["EC:3.5.4.13"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines","termid":"GO:0016814"},{"relation_name":"is_a","term_name":"deaminase activity","termid":"GO:0019239"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0016810"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016787","GO:0016810","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"dCTP deaminase activity","secondary_identifiers":["MetaCyc:DCTP-DEAM-RXN","RHEA:22680","Reactome:R-HSA-180632"],"synonyms":[{"name":"5-methyl-dCTP deaminase activity","type":"related"},{"name":"dCTP aminohydrolase activity","type":"related"},{"name":"deoxycytidine triphosphate deaminase activity","type":"related"}],"termid":"GO:0008829"}


id: GO:0033236
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: an 11-beta-hydroxysteroid + NAD+ = an 11-oxosteroid + NADH + H+.","definition_xrefs":["PMID:15761036"],"gene_count":0,"genotype_count":0,"name":"obsolete 11-beta-hydroxysteroid dehydrogenase (NAD+) activity (obsolete GO:0033236)","synonyms":[{"name":"11-beta-hydroxysteroid dehydrogenase (NAD+) activity","type":"exact"}],"termid":"GO:0033236"}


id: FYPO:0003270
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"Auxotrophy in which a cell is unable to synthesize glutathione, and therefore requires glutathione in the medium for vegetative cell growth.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"auxotrophy","termid":"FYPO:0000128"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0000002"],"is_obsolete":false,"name":"growth auxotrophic for glutathione","synonyms":[{"name":"glutathione auxotrophy","type":"exact"},{"name":"growth auxotrophic for glutathione during mitotic cell cycle","type":"related"},{"name":"growth auxotrophic for glutathione during vegetative growth","type":"exact"}],"termid":"FYPO:0003270"}


id: GO:0008200
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binds to and stops, prevents, or reduces the activity of an ion channel.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"channel inhibitor activity","termid":"GO:0016248"},{"relation_name":"is_a","term_name":"ion channel regulator activity","termid":"GO:0099106"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0140678"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0098772"}],"interesting_parent_ids":["GO:0140678","GO:0003674","GO:0098772"],"is_obsolete":false,"name":"ion channel inhibitor activity","termid":"GO:0008200"}


id: PBO:0075103
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nucleolar RNA, C/D box 152","termid":"PBO:0075103"}


id: GO:1901996
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of indoleacetic acid biosynthetic process via tryptophan.","definition_xrefs":["GOC:TermGenie","PMID:23377040"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of auxin biosynthetic process","termid":"GO:0010600"},{"relation_name":"is_a","term_name":"regulation of tryptophan metabolic process","termid":"GO:0090357"},{"relation_name":"regulates","term_name":"indoleacetic acid biosynthetic process via tryptophan","termid":"GO:0009848"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0044281"},{"rel_name":"regulates","termid":"GO:0006520"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0044281","GO:0006520"],"is_obsolete":false,"name":"regulation of indoleacetic acid biosynthetic process via tryptophan","synonyms":[{"name":"regulation of IAA biosynthetic process via tryptophan","type":"exact"},{"name":"regulation of indoleacetic acid anabolism via tryptophan","type":"exact"},{"name":"regulation of indoleacetic acid formation via tryptophan","type":"exact"},{"name":"regulation of indoleacetic acid synthesis via tryptophan","type":"exact"}],"termid":"GO:1901996"}


id: PBO:0029349
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_tRNA_level","termid":"PBO:0029349"}


id: FYPO:0003613
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which cohesion between sister chromatids is normal (i.e. indistinguishable from wild type) during prophase of the first meiotic nuclear division.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal meiotic sister chromatid cohesion","termid":"FYPO:0002094"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000257"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0000257"],"is_obsolete":false,"name":"normal meiotic sister chromatid cohesion during meiotic prophase I","synonyms":[{"name":"normal sister chromatid cohesion during meiotic prophase I","type":"exact"}],"termid":"FYPO:0003613"}


id: PBO:0078991
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-Thr (anticodon AGT) 1-1","termid":"PBO:0078991"}


id: GO:0019051
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. A process in which a viral gene product activates host apoptosis, leading to an increase in the frequency, rate or extent of apoptosis in the host cell.","definition_xrefs":["GOC:dph","GOC:mtg_apoptosis"],"gene_count":0,"genotype_count":0,"name":"obsolete induction by virus of host apoptotic process (obsolete GO:0019051)","synonyms":[{"name":"activation by virus of host apoptosis","type":"exact"},{"name":"activation by virus of host apoptotic programmed cell death","type":"exact"},{"name":"activation of apoptosis in host by virus","type":"exact"},{"name":"activation of host caspases by virus","type":"narrow"},{"name":"induction by virus of host apoptosis","type":"narrow"},{"name":"induction by virus of host apoptotic programmed cell death","type":"exact"},{"name":"induction by virus of host caspase activity","type":"narrow"},{"name":"induction by virus of host cysteine-type endopeptidase activity involved in apoptotic process","type":"narrow"},{"name":"induction of apoptosis in host by virus","type":"exact"},{"name":"positive regulation of apoptosis by virus","type":"narrow"},{"name":"positive regulation of apoptotic process by virus","type":"exact"}],"termid":"GO:0019051"}


id: PBO:0061950
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 2 subfamily A member 2","termid":"PBO:0061950"}


id: GO:0019191
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Enables the transfer of cellobiose from one side of a membrane to the other. Cellobiose, or 4-O-beta-D-glucopyranosyl-D-glucose, is a disaccharide that represents the basic repeating unit of cellulose.","definition_xrefs":["ISBN:0198506732","ISBN:0815340729","GOC:mtg_transport"],"direct_ancestors":[{"relation_name":"is_a","term_name":"disaccharide transmembrane transporter activity","termid":"GO:0015154"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0022857"}],"interesting_parent_ids":["GO:0022857","GO:0003674","GO:0005215"],"is_obsolete":false,"name":"cellobiose transmembrane transporter activity","secondary_identifiers":["GO:0019190"],"synonyms":[{"name":"cellobiose permease activity","type":"exact"}],"termid":"GO:0019191"}


id: PBO:0030402
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_protein_complex_assembly","termid":"PBO:0030402"}


id: PR:O14218
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPAC6B12.13 gene.","definition_xrefs":["PRO:DNx","UniProtKB:O14218"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"type 1 phosphatases regulator ypi1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC6B12.13","synonyms":[{"name":"Spom972h-SPAC6B12.13","type":"exact"}],"termid":"PR:O14218"}


id: PBO:0083427
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Dubious open reading frame; unlikely to encode a functional protein, based on available experimental and comparative sequence data; partially overlaps the uncharacterized ORF YBR063C","termid":"PBO:0083427"}


id: FYPO:0005133
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype in which the localization of a protein to the ascospore wall is decreased.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal protein localization during meiotic cell cycle","termid":"FYPO:0004094"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0000138","FYPO:0000002","FYPO:0001985"],"is_obsolete":false,"name":"decreased protein localization to ascospore wall","synonyms":[{"name":"decreased protein localisation to ascospore wall","type":"exact"},{"name":"decreased protein localization to spore wall","type":"exact"},{"name":"reduced protein localization to ascospore wall","type":"exact"}],"termid":"FYPO:0005133"}


id: PBO:0090757
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"diphthamide synthetase Dph6","termid":"PBO:0090757"}


id: GO:0070938
data:
  {"annotated_genes":["SJAG_03596","SJAG_02864","SJAG_04498","SJAG_02831","SJAG_02431","SJAG_03704","SJAG_04597","SJAG_03025","SJAG_00807","SJAG_03564","SJAG_00845","SJAG_03374","SJAG_04375","SJAG_00279","SJAG_01114","SJAG_03887","SJAG_03681","SJAG_03631","SJAG_02392","SJAG_00268","SJAG_04077","SJAG_03379","SJAG_00185","SJAG_03625","SJAG_01787","SJAG_00677","SJAG_00938","SJAG_01277","SJAG_04887","SJAG_00229","SJAG_02737","SJAG_00663","SJAG_02266","SJAG_04621","SJAG_02838","SJAG_04703","SJAG_02169","SJAG_04509","SJAG_00228","SJAG_02320","SJAG_04461","SJAG_03088","SJAG_03581","SJAG_03145","SJAG_00750","SJAG_05285","SJAG_01665","SJAG_00082","SJAG_01889","SJAG_02278","SJAG_01143","SJAG_03703"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[114321,114422,114423,114421,114420,114265,114419],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0005826"},{"annotations":[96735,113677,86394,114405,85509,100718,114407,114410,90166,114412,85040,93805,89426,106025,112725,83649,88147,96728,110952,111038,114319,114414,113864,102246],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0110085"},{"annotations":[112952,100509,104365,95997,96164],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0120106"},{"annotations":[108565,92742,112953,86439,85680,99106,84021,90508,91406,106066,112970,89995,107531,91866,96401,101564,104366],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0120105"},{"annotations":[93425,112052,112145,96427,103466,99332,104367,93556,87943,112954,88193,97854,93175,102394,95585],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0120104"}]},"cv_name":"cellular_component","definition":"A cytoskeletal structure composed of filamentous protein that forms beneath the membrane of many cells or organelles, in the plane of cell or organelle division. Ring contraction is associated with centripetal growth of the membrane that divides the cytoplasm of the two daughter cells or organelles.","definition_xrefs":["PMID:17913889","GOC:mah","ISBN:0123645859","ISBN:0792354923","PMID:10791428"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular anatomical entity","termid":"GO:0110165"}],"gene_count":52,"genes_by_uniquename":{"SJAG_00082":null,"SJAG_00185":null,"SJAG_00228":null,"SJAG_00229":null,"SJAG_00268":null,"SJAG_00279":null,"SJAG_00663":null,"SJAG_00677":null,"SJAG_00750":null,"SJAG_00807":null,"SJAG_00845":null,"SJAG_00938":null,"SJAG_01114":null,"SJAG_01143":null,"SJAG_01277":null,"SJAG_01665":null,"SJAG_01787":null,"SJAG_01889":null,"SJAG_02169":null,"SJAG_02266":null,"SJAG_02278":null,"SJAG_02320":null,"SJAG_02392":null,"SJAG_02431":null,"SJAG_02737":null,"SJAG_02831":null,"SJAG_02838":null,"SJAG_02864":null,"SJAG_03025":null,"SJAG_03088":null,"SJAG_03145":null,"SJAG_03374":null,"SJAG_03379":null,"SJAG_03564":null,"SJAG_03581":null,"SJAG_03596":null,"SJAG_03625":null,"SJAG_03631":null,"SJAG_03681":null,"SJAG_03703":null,"SJAG_03704":null,"SJAG_03887":null,"SJAG_04077":null,"SJAG_04375":null,"SJAG_04461":null,"SJAG_04498":null,"SJAG_04509":null,"SJAG_04597":null,"SJAG_04621":null,"SJAG_04703":null,"SJAG_04887":null,"SJAG_05285":null},"genotype_count":0,"in_subsets":["cc_goslim_japonicus"],"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"contractile ring","references_by_uniquename":{"GO_REF:0000107":null,"PMID:25866389":null,"PMID:27059155":null,"PMID:27734801":null,"PMID:28655757":null,"PMID:36148799":null},"synonyms":[{"name":"constriction ring","type":"related"},{"name":"cytokinetic ring","type":"related"}],"termid":"GO:0070938","terms_by_termid":{"GO:0005826":null,"GO:0110085":null,"GO:0120104":null,"GO:0120105":null,"GO:0120106":null}}


id: PBO:0058099
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 4315-1","termid":"PBO:0058099"}


id: PBO:0003395
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"U3 snoRNP protein Nop56 (predicted)","termid":"PBO:0003395"}


id: PBO:0058849
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 8078","termid":"PBO:0058849"}


id: SO:0001680
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A regulatory region that is involved in the control of the process of translation.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulatory_region","termid":"SO:0005836"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"translation_regulatory_region","synonyms":[{"name":"translation regulatory region","type":"exact"}],"termid":"SO:0001680"}


id: GO:0097081
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The commitment of cells to a vascular smooth muscle cell fate and their capacity to differentiate into vascular smooth muscle cells. A vascular smooth muscle cell is a non-striated, elongated, spindle-shaped cell found lining the blood vessels.","definition_xrefs":["GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"muscle cell fate commitment","termid":"GO:0042693"},{"relation_name":"part_of","term_name":"vascular associated smooth muscle cell differentiation","termid":"GO:0035886"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"vascular associated smooth muscle cell fate commitment","synonyms":[{"name":"vascular smooth muscle cell fate commitment","type":"exact"}],"termid":"GO:0097081"}


id: GO:0015641
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. (Was not defined before being made obsolete).","definition_xrefs":["GOC:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete lipoprotein toxin (obsolete GO:0015641)","synonyms":[{"name":"lipoprotein toxin","type":"exact"}],"termid":"GO:0015641"}


id: GO:0102181
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 4alpha-formyl-stigmasta-7,24(241)-dien-3beta-ol + NADH + O2 = 4alpha-carboxy-stigmasta-7,24(241)-dien-3beta-ol + NAD + H2O.","definition_xrefs":["GOC:pz","EC:1.14.13.-"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen","termid":"GO:0016709"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0016491","GO:0003824"],"is_obsolete":false,"name":"4alpha-formyl-stigmasta-7,24(241)-dien-3beta-ol-methyl oxidase activity","secondary_identifiers":["RHEA:59040","MetaCyc:RXN-11937"],"termid":"GO:0102181"}


id: PBO:0083994
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Glutathione S-transferase capable of homodimerization; functional overlap with Gtt2p, Grx1p, and Grx2p; protein abundance increases in response to DNA replication stress","termid":"PBO:0083994"}


id: GO:0008980
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: ATP + propanoate = ADP + propanoyl phosphate.","definition_xrefs":["EC:2.7.2.15"],"direct_ancestors":[{"relation_name":"is_a","term_name":"kinase activity","termid":"GO:0016301"},{"relation_name":"is_a","term_name":"phosphotransferase activity, carboxyl group as acceptor","termid":"GO:0016774"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0016301"}],"interesting_parent_ids":["GO:0003674","GO:0016301","GO:0016740","GO:0003824"],"is_obsolete":false,"name":"propionate kinase activity","secondary_identifiers":["RHEA:23148"],"synonyms":[{"name":"ATP:propanoate phosphotransferase activity","type":"exact"},{"name":"PduW","type":"related"},{"name":"TdcD","type":"related"},{"name":"propanoate kinase activity","type":"exact"}],"termid":"GO:0008980"}


id: PBO:0046934
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"family with sequence similarity 50 member B","termid":"PBO:0046934"}


id: PBO:0029813
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_actin_cortical_patch_localization_during_mitotic_interphase","termid":"PBO:0029813"}


id: PBO:0091865
data:
  {"annotation_feature_type":"gene","cv_name":"name_description","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial ring-type zinc finger protein","termid":"PBO:0091865"}


id: PR:P62506
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- mrpl44 gene.","definition_xrefs":["PRO:DNx","UniProtKB:P62506"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"54S ribosomal protein L44, mitochondrial (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC56F2.14","synonyms":[{"name":"Spom972h-mrpl44","type":"exact"}],"termid":"PR:P62506"}


id: FYPO:0000481
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which mitotic recombination is abnormal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal DNA recombination during vegetative growth","termid":"FYPO:0001345"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000293"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0001320","FYPO:0000002","FYPO:0001985","FYPO:0000293"],"is_obsolete":false,"name":"abnormal mitotic recombination","synonyms":[{"name":"abnormal mitotic recombination during mitotic cell cycle","type":"related"},{"name":"abnormal mitotic recombination during vegetative growth","type":"exact"},{"name":"mitotic recombination: abnormal","type":"related"}],"termid":"FYPO:0000481"}


id: SO:0001257
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"The binding site (recognition site) of a homing endonuclease. The binding site is typically large.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nuclease_binding_site","termid":"SO:0000059"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"homing_endonuclease_binding_site","synonyms":[{"name":"homing endonuclease binding site","type":"exact"}],"termid":"SO:0001257"}


id: PBO:0010228
data:
  {"annotation_feature_type":"gene","cv_name":"disease_associated","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"paramyloidosis","termid":"PBO:0010228"}


id: GO:1902331
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any DNA strand elongation that is involved in bacterial-type DNA replication.","definition_xrefs":["GOC:mtg_cell_cycle","GOC:TermGenie"],"gene_count":0,"genotype_count":0,"name":"obsolete DNA strand elongation involved in bacterial-type DNA replication (obsolete GO:1902331)","termid":"GO:1902331"}


id: MOD:01568
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively replaces an O3-hydrogen atom of a serine residue with the Applied Biosystems iTRAQ8plex-118 reporter+balance group.","definition_xrefs":["PubMed:18688235"],"direct_ancestors":[{"relation_name":"is_a","term_name":"iTRAQ8plex-118 reporter+balance reagent acylated residue","termid":"MOD:01563"},{"relation_name":"is_a","term_name":"iTRAQ8plex reporter+balance reagent O-acylated residue","termid":"MOD:01714"},{"relation_name":"is_a","term_name":"O3-acylated L-serine","termid":"MOD:02003"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:00649"}],"interesting_parent_ids":["MOD:00649"],"is_obsolete":false,"name":"iTRAQ8plex-118 reporter+balance reagent O3-acylated serine","synonyms":[{"name":"(4-methylpiperazin-1-yl)acetyl","type":"exact"}],"termid":"MOD:01568"}


id: GO:0004313
data:
  {"annotated_genes":["SJAG_04107"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[96210],"is_not":false,"summary":null,"term":"GO:0004313"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: acetyl-CoA + [acyl-carrier protein] = CoA + acetyl-[acyl-carrier protein].","definition_xrefs":["RHEA:41788"],"direct_ancestors":[{"relation_name":"is_a","term_name":"S-acetyltransferase activity","termid":"GO:0016418"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04107":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0016746"}],"interesting_parent_ids":["GO:0016740","GO:0016746","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"[acyl-carrier-protein] S-acetyltransferase activity","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["MetaCyc:ACP-S-ACETYLTRANSFER-RXN","EC:2.3.1.38"],"synonyms":[{"name":"ACAT activity","type":"broad"},{"name":"ACP S-acetyltransferase activity","type":"exact"},{"name":"ACP acetyltransferase activity","type":"related"},{"name":"ACPacetyltransferase activity","type":"related"},{"name":"[acyl-carrier protein] S-acetyltransferase activity","type":"exact"},{"name":"acetyl coenzyme A-acyl-carrier-protein transacylase activity","type":"related"},{"name":"acetyl-CoA:acyl-carrier-protein S-acetyltransferase activity","type":"related"},{"name":"acyl-carrier-protein S-acetyltransferase activity","type":"related"},{"name":"acyl-carrier-protein acetyltransferase activity","type":"related"},{"name":"acyl-carrier-proteinacetyltransferase activity","type":"related"}],"termid":"GO:0004313","terms_by_termid":{"GO:0004313":null}}


id: PBO:0003284
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"spindle pole body protein Kms2","termid":"PBO:0003284"}


id: GO:0140967
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The directed movement of mangnanese ions from outside of a cell into a cell.","definition_xrefs":["PMID:22773749"],"direct_ancestors":[{"relation_name":"is_a","term_name":"manganese ion transmembrane transport","termid":"GO:0071421"},{"relation_name":"is_a","term_name":"inorganic cation import across plasma membrane","termid":"GO:0098659"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0055085"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0051179","GO:0006810","GO:0055085","GO:0008150"],"is_obsolete":false,"name":"manganese import into cell","synonyms":[{"name":"manganese influx","type":"broad"}],"termid":"GO:0140967"}


id: GO:0045521
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to an interleukin-25 receptor.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cytokine receptor binding","termid":"GO:0005126"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005515"}],"interesting_parent_ids":["GO:0005488","GO:0003674","GO:0005515"],"is_obsolete":false,"name":"interleukin-25 receptor binding","synonyms":[{"name":"IL-25","type":"narrow"},{"name":"interleukin-25 receptor ligand","type":"narrow"}],"termid":"GO:0045521"}


id: FYPO:0002736
data:
  {"alleles_by_uniquename":{"SJAG_00871:allele-1":{"allele_type":"amino_acid_mutation","description":"cut3-T19E","gene_uniquename":"SJAG_00871","name":"cut3-T19E","uniquename":"SJAG_00871:allele-1"},"SJAG_01956:allele-1":{"allele_type":"amino_acid_mutation","description":"E405K ts","gene_uniquename":"SJAG_01956","name":"nuc2-1051","uniquename":"SJAG_01956:allele-1"},"SJAG_03351:allele-1":{"allele_type":"amino_acid_mutation","description":"A186T ts","gene_uniquename":"SJAG_03351","name":"cut23-415","uniquename":"SJAG_03351:allele-1"},"SJAG_03575:allele-1":{"allele_type":"amino_acid_mutation","description":"E548K ts","gene_uniquename":"SJAG_03575","name":"apc2-361","uniquename":"SJAG_03575:allele-1"},"SJAG_04284:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_04284","name":"nup61delta","uniquename":"SJAG_04284:allele-1"},"SJAG_04464:allele-1":{"allele_type":"amino_acid_mutation","description":"R152C","gene_uniquename":"SJAG_04464","name":"pim1-R152C","synonyms":[{"name":"Inferred CDK-phospho-mimic mutation","reference":"PMID:28954740","type":"exact"}],"uniquename":"SJAG_04464:allele-1"}},"annotation_feature_type":"genotype","cv_annotations":{"multi_locus_phenotype":[{"annotations":[114479],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0000619"}],"single_locus_phenotype":[{"annotations":[114480],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0000619"},{"annotations":[114371,114370,114372],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0000618"}]},"cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which a cell does not proceed normally through a specific mitotic cell cycle phase. A mitotic cell cycle phase is any of the distinct periods or stages into which the mitotic cell cycle is divided. Each phase is characterized by the occurrence of specific biochemical and morphological events.","definition_xrefs":["GO:0022403","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal mitotic cell cycle","termid":"FYPO:0000059"},{"relation_name":"is_a","term_name":"abnormal cell cycle phase","termid":"FYPO:0002735"}],"gene_count":6,"genes_by_uniquename":{"SJAG_00871":null,"SJAG_01956":null,"SJAG_03351":null,"SJAG_03575":null,"SJAG_04284":null,"SJAG_04464":null},"genotype_count":5,"genotypes_by_uniquename":{"apc2-361-E548K_ts-amino_acid_mutation-expression-not_assayed_or_wild_type":{"display_name":"apc2-361(E548K ts)","display_uniquename":"apc2-361-E548K_ts-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03575:allele-1","expression":"Not assayed or wild type"}]}]},"cut23-415-A186T_ts-amino_acid_mutation-expression-not_assayed_or_wild_type":{"display_name":"cut23-415(A186T ts)","display_uniquename":"cut23-415-A186T_ts-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03351:allele-1","expression":"Not assayed or wild type"}]}]},"cut3-T19E-cut3-T19E-amino_acid_mutation-expression-not_assayed_or_wild_type__pim1-R152C-R152C-amino_acid_mutation-expression-not_assayed_or_wild_type":{"display_name":"cut3-T19E(aa) pim1-R152C(aa)","display_uniquename":"cut3-T19E-cut3-T19E-amino_acid_mutation-expression-not_assayed_or_wild_type__pim1-R152C-R152C-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_00871:allele-1","expression":"Not assayed or wild type"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_04464:allele-1","expression":"Not assayed or wild type"}]}]},"nuc2-1051-E405K_ts-amino_acid_mutation-expression-not_assayed_or_wild_type":{"display_name":"nuc2-1051(E405K ts)","display_uniquename":"nuc2-1051-E405K_ts-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01956:allele-1","expression":"Not assayed or wild type"}]}]},"nup61delta":{"display_name":"nup61delta","display_uniquename":"nup61delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04284:allele-1","expression":"Null"}]}]}},"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000631"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000002","FYPO:0005447","FYPO:0000631"],"is_obsolete":false,"multi_locus_annotated_genes":["SJAG_00871","SJAG_04464"],"name":"abnormal mitotic cell cycle phase","references_by_uniquename":{"PMID:23786411":null,"PMID:28954740":null},"single_locus_annotated_genes":["SJAG_04284","SJAG_03351","SJAG_03575","SJAG_01956"],"single_locus_genotype_uniquenames":["nuc2-1051-E405K_ts-amino_acid_mutation-expression-not_assayed_or_wild_type","nup61delta","apc2-361-E548K_ts-amino_acid_mutation-expression-not_assayed_or_wild_type","cut23-415-A186T_ts-amino_acid_mutation-expression-not_assayed_or_wild_type"],"termid":"FYPO:0002736","terms_by_termid":{"FYECO:0000004":null,"FYECO:0000005":null,"FYECO:0000137":null,"FYPO:0000618":null,"FYPO:0000619":null,"FYPO_EXT:0000001":null}}


id: GO:1901515
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Enables the transfer of poly-beta-1,6-N-acetyl-D-glucosamine from one side of a membrane to the other.","definition_xrefs":["GOC:TermGenie","PMID:15090514","PMID:18359807"],"direct_ancestors":[{"relation_name":"is_a","term_name":"transmembrane transporter activity","termid":"GO:0022857"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0005215"}],"interesting_parent_ids":["GO:0022857","GO:0003674","GO:0005215"],"is_obsolete":false,"name":"poly-beta-1,6-N-acetyl-D-glucosamine transmembrane transporter activity","termid":"GO:1901515"}


id: PBO:0018237
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosome assembly protein Sqt1 (predicted)","termid":"PBO:0018237"}


id: FYPO:0006730
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which strand elongation during nuclear DNA replication is abnormal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal mitotic DNA replication","termid":"FYPO:0001343"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000293"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000002","FYPO:0000631","FYPO:0005447","FYPO:0001320","FYPO:0000293"],"is_obsolete":false,"name":"abnormal mitotic DNA replication elongation","synonyms":[{"name":"abnormal DNA replication elongation during mitotic cell cycle","type":"exact"},{"name":"abnormal DNA replication elongation during vegetative growth","type":"exact"},{"name":"abnormal DNA replication strand elongation","type":"exact"},{"name":"abnormal DNA strand elongation involved in nuclear cell cycle DNA replication","type":"exact"}],"termid":"FYPO:0006730"}


id: PBO:0027117
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abolished_premeiotic_DNA_replication_during_azygotic_meiosis","termid":"PBO:0027117"}


id: PBO:0002845
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"elongator complex, histone acetyltransferase subunit Elp3 (predicted)","termid":"PBO:0002845"}


id: FYPO:0001779
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of centromeres and associated kinetochores into a cluster at the nuclear periphery is abnormal. Centromere-kinetochore complexes normally cluster near the old spindle pole body during interphase of the mitotic cell cycle.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal centromere localization","termid":"FYPO:0001778"},{"relation_name":"is_a","term_name":"abnormal mitotic cell cycle process","termid":"FYPO:0002737"},{"relation_name":"is_a","term_name":"abnormal heterochromatin tethering at nuclear periphery","termid":"FYPO:0007768"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0005447","FYPO:0000138","FYPO:0000631","FYPO:0001320","FYPO:0001985"],"is_obsolete":false,"name":"abnormal centromere clustering at nuclear periphery","secondary_identifiers":["FYPO:0001780"],"synonyms":[{"name":"abnormal centromere clustering at SPB","type":"related"},{"name":"abnormal centromere clustering at nuclear periphery during interphase of mitotic cell cycle","type":"exact"},{"name":"abnormal centromere clustering at nuclear periphery during mitotic cell cycle","type":"exact"},{"name":"abnormal centromere clustering at nuclear periphery during vegetative growth","type":"exact"},{"name":"abnormal centromere clustering at old mitotic spindle pole body","type":"related"},{"name":"abnormal centromere clustering at spindle pole body","type":"related"},{"name":"abnormal centromere-SPB clustering","type":"related"},{"name":"abnormal kinetochore clustering at SPB","type":"related"},{"name":"abnormal kinetochore clustering at old mitotic spindle pole body","type":"related"},{"name":"abnormal kinetochore clustering at spindle pole body","type":"related"},{"name":"abnormal kinetochore localization at spindle pole body","type":"related"},{"name":"abnormal kinetochores to spindle pole body clustering","type":"related"},{"name":"abnormal mitotic centromere clustering at nuclear periphery","type":"exact"},{"name":"mislocalized, scattered centromeres","type":"related"},{"name":"unclustered kinetochores","type":"related"}],"termid":"FYPO:0001779"}


id: GO:0046604
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of centrosome separation.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of mitotic centrosome separation","termid":"GO:0046602"},{"relation_name":"is_a","term_name":"positive regulation of cell cycle process","termid":"GO:0090068"},{"relation_name":"positively_regulates","term_name":"mitotic centrosome separation","termid":"GO:0007100"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"positively_regulates","termid":"GO:0007049"},{"rel_name":"regulates","termid":"GO:0007049"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0007049","GO:0008150"],"is_obsolete":false,"name":"positive regulation of mitotic centrosome separation","synonyms":[{"name":"activation of mitotic centrosome separation","type":"narrow"},{"name":"stimulation of mitotic centrosome separation","type":"narrow"},{"name":"up regulation of mitotic centrosome separation","type":"exact"},{"name":"up-regulation of mitotic centrosome separation","type":"exact"},{"name":"upregulation of mitotic centrosome separation","type":"exact"}],"termid":"GO:0046604"}


id: SO:0000891
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A gene that is negatively autoreguated.","definition_xrefs":["SO:xp"],"direct_ancestors":[{"relation_name":"has_quality","term_name":"negatively_autoregulated","termid":"SO:0000473"},{"relation_name":"is_a","term_name":"gene","termid":"SO:0000704"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"negatively_autoregulated_gene","synonyms":[{"name":"negatively autoregulated gene","type":"exact"}],"termid":"SO:0000891"}


id: PBO:0076594
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TBC1 domain family member 15","termid":"PBO:0076594"}


id: GO:0051304
data:
  {"annotated_genes":["SJAG_01679","SJAG_04884","SJAG_05329","SJAG_03048","SJAG_03327","SJAG_02104","SJAG_02169","SJAG_01082","SJAG_01330","SJAG_02186","SJAG_04999","SJAG_00460","SJAG_01956","SJAG_04457","SJAG_02498","SJAG_02542","SJAG_04126","SJAG_03681","SJAG_00146","SJAG_04661","SJAG_04968","SJAG_02380","SJAG_04259","SJAG_02336","SJAG_03353","SJAG_02451","SJAG_00666","SJAG_00145","SJAG_01805","SJAG_04573","SJAG_03350","SJAG_03126","SJAG_00883","SJAG_01837","SJAG_04699","SJAG_03351","SJAG_05236","SJAG_01297","SJAG_01515"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[103582,99307,109460,107203,95066,86398,102582,108988,111041],"is_not":false,"rel_names":["regulates","positively_regulates"],"summary":null,"term":"GO:1902426"},{"annotations":[101677,109685],"is_not":false,"rel_names":["regulates","negatively_regulates"],"summary":null,"term":"GO:1905318"},{"annotations":[112664],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0051307"},{"annotations":[89483,105467],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0051755"},{"annotations":[111797],"is_not":false,"rel_names":["regulates","negatively_regulates"],"summary":null,"term":"GO:0033316"},{"annotations":[97283,86035,95083,96262,90734,112666,92151,87385],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0051306"},{"annotations":[97246,101679,110692,105199,109689,94929],"is_not":false,"rel_names":["regulates","negatively_regulates"],"summary":null,"term":"GO:0007094"},{"annotations":[94206],"is_not":false,"rel_names":["regulates","negatively_regulates"],"summary":null,"term":"GO:1902103"},{"annotations":[98687],"is_not":false,"rel_names":["negatively_regulates","regulates"],"summary":null,"term":"GO:2000816"},{"annotations":[89791],"is_not":false,"rel_names":["regulates","positively_regulates"],"summary":null,"term":"GO:0140499"},{"annotations":[108993],"is_not":false,"rel_names":["regulates"],"summary":null,"term":"GO:1905326"},{"annotations":[90725],"is_not":false,"rel_names":["regulates","positively_regulates"],"summary":null,"term":"GO:1905191"},{"annotations":[111803],"is_not":false,"rel_names":["regulates"],"summary":null,"term":"GO:0090267"},{"annotations":[97815,95612,89409,93226,106622,109945,97546],"is_not":false,"rel_names":["positively_regulates","regulates"],"summary":null,"term":"GO:0045842"},{"annotations":[111805],"is_not":false,"rel_names":["regulates","positively_regulates"],"summary":null,"term":"GO:1905824"},{"annotations":[95089],"is_not":false,"rel_names":["positively_regulates","regulates"],"summary":null,"term":"GO:1901970"},{"annotations":[96801],"is_not":false,"rel_names":["regulates"],"summary":null,"term":"GO:1905325"}]},"cv_name":"biological_process","definition":"The cell cycle process in which paired chromosomes are detached from each other. Chromosome separation begins with the release of cohesin complexes from chromosomes; in budding yeast, this includes the cleavage of cohesin complexes along the chromosome arms, followed by the separation of the centromeric regions. Chromosome separation also includes formation of chromatid axes mediated by condensins, and ends with the disentangling of inter-sister catenation catalyzed by topoisomerase II (topo II).","definition_xrefs":["GOC:mtg_cell_cycle","PMID:20352243","GOC:ai","GOC:lb","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell cycle process","termid":"GO:0022402"},{"relation_name":"part_of","term_name":"chromosome segregation","termid":"GO:0007059"}],"gene_count":39,"genes_by_uniquename":{"SJAG_00145":null,"SJAG_00146":null,"SJAG_00460":null,"SJAG_00666":null,"SJAG_00883":null,"SJAG_01082":null,"SJAG_01297":null,"SJAG_01330":null,"SJAG_01515":null,"SJAG_01679":null,"SJAG_01805":null,"SJAG_01837":null,"SJAG_01956":null,"SJAG_02104":null,"SJAG_02169":null,"SJAG_02186":null,"SJAG_02336":null,"SJAG_02380":null,"SJAG_02451":null,"SJAG_02498":null,"SJAG_02542":null,"SJAG_03048":null,"SJAG_03126":null,"SJAG_03327":null,"SJAG_03350":null,"SJAG_03351":null,"SJAG_03353":null,"SJAG_03681":null,"SJAG_04126":null,"SJAG_04259":null,"SJAG_04457":null,"SJAG_04573":null,"SJAG_04661":null,"SJAG_04699":null,"SJAG_04884":null,"SJAG_04968":null,"SJAG_04999":null,"SJAG_05236":null,"SJAG_05329":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0007049"}],"interesting_parent_ids":["GO:0007049","GO:0008150"],"is_obsolete":false,"name":"chromosome separation","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["GO:0034500"],"synonyms":[{"name":"chromatid release","type":"related"},{"name":"rDNA separation","type":"narrow"}],"termid":"GO:0051304","terms_by_termid":{"GO:0007094":null,"GO:0033316":null,"GO:0045842":null,"GO:0051306":null,"GO:0051307":null,"GO:0051755":null,"GO:0090267":null,"GO:0140499":null,"GO:1901970":null,"GO:1902103":null,"GO:1902426":null,"GO:1905191":null,"GO:1905318":null,"GO:1905325":null,"GO:1905326":null,"GO:1905824":null,"GO:2000816":null}}


id: PR:Q9UT30
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- brr6 gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q9UT30"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nucleus export protein brr6 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC8F11.06","synonyms":[{"name":"Spom972h-brr6","type":"exact"}],"termid":"PR:Q9UT30"}


id: PBO:0082244
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Alpha subunit of fatty acid synthetase; complex catalyzes the synthesis of long-chain saturated fatty acids; contains the acyl-carrier protein domain and beta-ketoacyl reductase, beta-ketoacyl synthase and self-pantetheinylation activities","termid":"PBO:0082244"}


id: FYPO:0005204
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A regulation phenotype observed in the vegetative growth phase of the life cycle in which positive regulation of DNA-directed DNA polymerase activity occurs to a greater extent than normal.","definition_xrefs":["PomBase:mah","PMID:9563836"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal regulation of catalytic activity","termid":"FYPO:0004916"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0000002","FYPO:0001320","FYPO:0001985"],"is_obsolete":false,"name":"increased positive regulation of DNA-directed DNA polymerase activity","synonyms":[{"name":"increased activation of DNA-directed DNA polymerase activity","type":"narrow"},{"name":"increased positive regulation of DNA polymerase activity","type":"broad"},{"name":"increased positive regulation of DNA-directed DNA polymerase activity during mitotic cell cycle","type":"related"},{"name":"increased positive regulation of DNA-directed DNA polymerase activity during vegetative growth","type":"exact"}],"termid":"FYPO:0005204"}


id: PATO:0001703
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A color consisting of violet hue and low saturation.","definition_xrefs":["PATOC:GVG"],"direct_ancestors":[{"relation_name":"is_a","term_name":"violet","termid":"PATO:0001424"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"desaturated violet","synonyms":[{"name":"pale violet","type":"exact"}],"termid":"PATO:0001703"}


id: PBO:0003495
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SCF ubiquitin ligase complex subunit Skp1","termid":"PBO:0003495"}


id: PBO:0076858
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"testis expressed 2","termid":"PBO:0076858"}


id: PBO:0065027
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"peroxiredoxin 4 pseudogene 1","termid":"PBO:0065027"}


id: PR:Q69Z14
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- vma9 gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q69Z14"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"V-type proton ATPase subunit e (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC1685.16","synonyms":[{"name":"Spom972h-vma9","type":"exact"},{"name":"V-ATPase subunit e (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"vacuolar proton pump subunit e (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:Q69Z14"}


id: PBO:0001173
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"UBA/TPR/DNAJ domain protein Ucp7","termid":"PBO:0001173"}


id: PBO:0016538
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"conserved fungal protein, associated with clathrin coated vesicles (predicted)","termid":"PBO:0016538"}


id: GO:0004132
data:
  {"annotated_genes":["SJAG_03771"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[103706],"is_not":false,"summary":null,"term":"GO:0004132"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: dCMP + H2O = dUMP + NH3.","definition_xrefs":["EC:3.5.4.12"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines","termid":"GO:0016814"},{"relation_name":"is_a","term_name":"deaminase activity","termid":"GO:0019239"}],"gene_count":1,"genes_by_uniquename":{"SJAG_03771":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016810"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016787"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016787","GO:0016810"],"is_obsolete":false,"name":"dCMP deaminase activity","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["Reactome:R-HSA-73596","RHEA:22924","MetaCyc:DCMP-DEAMINASE-RXN"],"synonyms":[{"name":"dCMP aminohydrolase activity","type":"related"},{"name":"deoxy-CMP-deaminase activity","type":"related"},{"name":"deoxycytidine monophosphate deaminase activity","type":"related"},{"name":"deoxycytidine-5'-monophosphate aminohydrolase activity","type":"related"},{"name":"deoxycytidine-5'-phosphate deaminase activity","type":"related"},{"name":"deoxycytidylate aminohydrolase activity","type":"related"},{"name":"deoxycytidylate deaminase activity","type":"related"}],"termid":"GO:0004132","terms_by_termid":{"GO:0004132":null}}


id: PBO:0048224
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"growth arrest and DNA damage inducible alpha pseudogene 1","termid":"PBO:0048224"}


id: FYPO:0004515
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A physical cellular phenotype observed in the vegetative growth phase of the life cycle in which DNA is not visible in a distinct structure corresponding to the nucleus, but is instead diffuse or not visible at all.","definition_xrefs":["PMID:25552606","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal chromosome morphology during vegetative growth","termid":"FYPO:0000848"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000661"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000654"},{"rel_name":"is_a","termid":"FYPO:0000707"},{"rel_name":"output_of","termid":"FYPO:0000641"},{"rel_name":"is_a","termid":"FYPO:0000652"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000641","FYPO:0000002","FYPO:0000652","FYPO:0001320","FYPO:0000707","FYPO:0000661","FYPO:0000654","FYPO:0005447"],"is_obsolete":false,"name":"abnormal chromosome morphology, indistinct DNA","synonyms":[{"name":"abnormal chromosome morphology, indistinct DNA during mitotic cell cycle","type":"related"},{"name":"abnormal chromosome morphology, indistinct DNA during vegetative growth","type":"exact"}],"termid":"FYPO:0004515"}


id: PBO:0082025
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger ZZ-type and EF-hand domain containing 1","termid":"PBO:0082025"}


id: SO:0000720
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A transposable element that is foreign.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"has_quality","term_name":"foreign","termid":"SO:0000784"},{"relation_name":"is_a","term_name":"transposable_element","termid":"SO:0000101"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"foreign_transposable_element","synonyms":[{"name":"foreign transposable element","type":"exact"}],"termid":"SO:0000720"}


id: PBO:0061900
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"opioid receptor delta 1","termid":"PBO:0061900"}


id: GO:0071546
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A P granule that contains the PIWIL2-TDRD1 module, a set of proteins that act in the primary piRNA pathway. The pi-body corresponds to the cementing material between mitochondria found in gonocytes.","definition_xrefs":["GOC:sp","PMID:20011505"],"direct_ancestors":[{"relation_name":"is_a","term_name":"P granule","termid":"GO:0043186"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005737"}],"interesting_parent_ids":["GO:0005737","GO:0005575"],"is_obsolete":false,"name":"pi-body","synonyms":[{"name":"intermitochondrial cement","type":"exact"}],"termid":"GO:0071546"}


id: PBO:0065168
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"proline dehydrogenase 1","termid":"PBO:0065168"}


id: GO:0039505
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process by which a symbiont inhibits or disrupts the normal processing and presentation of a peptide antigen on its cell surface in association with an MHC class II protein complex.","definition_xrefs":["PMID:27832589","VZ:820","GOC:bf","GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"symbiont-mediated suppression of host antigen processing and presentation","termid":"GO:0039588"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"symbiont-mediated suppression of host antigen processing and presentation of peptide antigen via MHC class II","synonyms":[{"name":"inhibition of host MHC class II molecule presentation by virus","type":"narrow"},{"name":"suppression by virus of host antigen processing and presentation of peptide antigen via MHC class II","type":"narrow"}],"termid":"GO:0039505"}


id: GO:0019958
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a C-X-C chemokine; C-X-C chemokines have a single amino acid between the first two cysteines of the characteristic four cysteine motif.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"chemokine binding","termid":"GO:0019956"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005515"},{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0005515","GO:0005488"],"is_obsolete":false,"name":"C-X-C chemokine binding","termid":"GO:0019958"}


id: PBO:0045219
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DNAJC8 pseudogene 4","termid":"PBO:0045219"}


id: PBO:0052177
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"potassium two pore domain channel subfamily K member 7","termid":"PBO:0052177"}


id: GO:1903319
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of protein maturation.","definition_xrefs":["GO_REF:0000058","GOC:TermGenie","GOC:vw"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of gene expression","termid":"GO:0010628"},{"relation_name":"is_a","term_name":"positive regulation of protein metabolic process","termid":"GO:0051247"},{"relation_name":"is_a","term_name":"regulation of protein maturation","termid":"GO:1903317"},{"relation_name":"positively_regulates","term_name":"protein maturation","termid":"GO:0051604"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0010467"},{"rel_name":"positively_regulates","termid":"GO:0051604"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"positively_regulates","termid":"GO:0010467"},{"rel_name":"regulates","termid":"GO:0051604"}],"interesting_parent_ids":["GO:0010467","GO:0008150","GO:0051604"],"is_obsolete":false,"name":"positive regulation of protein maturation","synonyms":[{"name":"activation of protein maturation","type":"narrow"},{"name":"up regulation of protein maturation","type":"exact"},{"name":"up-regulation of protein maturation","type":"exact"},{"name":"upregulation of protein maturation","type":"exact"}],"termid":"GO:1903319"}


