# terms

id: PBO:0069839
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 1125, pseudogene","termid":"PBO:0069839"}


id: GO:0005436
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: Na+(out) + phosphate(out) = Na+(in) + phosphate(in).","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"solute:sodium symporter activity","termid":"GO:0015370"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0022857"}],"interesting_parent_ids":["GO:0005215","GO:0022857","GO:0003674"],"is_obsolete":false,"name":"sodium:phosphate symporter activity","secondary_identifiers":["Reactome:R-HSA-427605","Reactome:R-HSA-428609","Reactome:R-HSA-5625123","Reactome:R-HSA-5687585","Reactome:R-HSA-427645","Reactome:R-HSA-2872498","Reactome:R-HSA-427656","Reactome:R-HSA-5651685","Reactome:R-HSA-5651697","GO:0015321","Reactome:R-HSA-5651971"],"synonyms":[{"name":"sodium-dependent phosphate transmembrane transporter activity","type":"related"},{"name":"sodium/phosphate symporter activity","type":"exact"}],"termid":"GO:0005436"}


id: PATO:0001472
data:
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id: GO:0010927
data:
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id: PBO:0062877
data:
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id: GO:0016429
data:
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id: PBO:0064655
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PPFIA binding protein 1","termid":"PBO:0064655"}


id: PBO:0081605
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ZNF528 antisense RNA 1","termid":"PBO:0081605"}


id: PBO:0069650
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 927, pseudogene","termid":"PBO:0069650"}


id: PATO:0001700
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A sleep pattern which has irregular start and/or end times.","definition_xrefs":["PATOC:GVG"],"direct_ancestors":[{"relation_name":"is_a","term_name":"sleep pattern","termid":"PATO:0000062"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"irregular sleep pattern","termid":"PATO:0001700"}


id: GO:0002747
data:
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id: GO:0048704
data:
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id: PBO:0075684
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"steroid receptor associated and regulated protein","termid":"PBO:0075684"}


id: GO:0019866
data:
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inner membrane","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000104":null,"GO_REF:0000107":null},"termid":"GO:0019866","terms_by_termid":{"GO:0000274":null,"GO:0000276":null,"GO:0001405":null,"GO:0005637":null,"GO:0005743":null,"GO:0005744":null,"GO:0005745":null,"GO:0005746":null,"GO:0005749":null,"GO:0005750":null,"GO:0005751":null,"GO:0005754":null,"GO:0005756":null,"GO:0031314":null,"GO:0031942":null,"GO:0032478":null,"GO:0042720":null,"GO:0042721":null,"GO:0044284":null,"GO:0061617":null,"GO:0099616":null,"GO:0099617":null,"GO:0140275":null,"GO:1990524":null,"GO:1990862":null}}


id: GO:0009940
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to an amino terminal propeptide, which functions as a sorting signal to sort away the soluble vacuolar protein from Golgi to lytic vacuole via clathrin-coated vesicles.","definition_xrefs":["PMID:10871276","GOC:sm"],"direct_ancestors":[{"relation_name":"is_a","term_name":"vacuolar sorting signal binding","termid":"GO:0010209"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005048"},{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0005488","GO:0005048","GO:0003674"],"is_obsolete":false,"name":"amino-terminal vacuolar sorting propeptide binding","termid":"GO:0009940"}


id: PBO:0076827
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"telomerase associated protein 1","termid":"PBO:0076827"}


id: PBO:0044452
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cytochrome P450 family 4 subfamily F member 31, pseudogene","termid":"PBO:0044452"}


id: PBO:0082098
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"7,8-diamino-pelargonic acid aminotransferase (DAPA); catalyzes the second step in the biotin biosynthesis pathway; BIO3 is in a cluster of 3 genes (BIO3, BIO4, and BIO5) that mediate biotin synthesis; BIO3 and BIO4 were acquired by horizontal gene transfer (HGT) from bacteria","termid":"PBO:0082098"}


id: GO:0006202
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of guanosine monophosphate into other compounds, including guanine.","definition_xrefs":["ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"GMP catabolic process","termid":"GO:0046038"},{"relation_name":"is_a","term_name":"guanine metabolic process","termid":"GO:0046098"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0055086"},{"rel_name":"is_a","termid":"GO:0044248"}],"interesting_parent_ids":["GO:0044248","GO:0044281","GO:0008150","GO:0055086"],"is_obsolete":false,"name":"GMP catabolic process to guanine","synonyms":[{"name":"GMP breakdown to guanine","type":"exact"},{"name":"GMP degradation to guanine","type":"exact"}],"termid":"GO:0006202"}


id: GO:0106161
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that activates or increases the frequency, rate or extent of small RNA loading onto RISC.","definition_xrefs":["GOC:ha","PMID:29775584"],"gene_count":0,"genotype_count":0,"name":"obsolete positive regulation of small RNA loading onto RISC (obsolete GO:0106161)","termid":"GO:0106161"}


id: PBO:0048824
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"G protein subunit gamma 10","termid":"PBO:0048824"}


id: PBO:0067656
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 833, pseudogene","termid":"PBO:0067656"}


id: GO:1904576
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a tunicamycin stimulus.","definition_xrefs":["PMID:23106379","GO_REF:0000071","GOC:TermGenie"],"gene_count":0,"genotype_count":0,"name":"obsolete response to tunicamycin (obsolete GO:1904576)","termid":"GO:1904576"}


id: GO:0048672
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of collateral sprouting.","definition_xrefs":["GOC:lm","GOC:dgh","GOC:dph","GOC:jid"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of cell growth","termid":"GO:0030307"},{"relation_name":"is_a","term_name":"positive regulation of developmental growth","termid":"GO:0048639"},{"relation_name":"is_a","term_name":"regulation of collateral sprouting","termid":"GO:0048670"},{"relation_name":"is_a","term_name":"positive regulation of axonogenesis","termid":"GO:0050772"},{"relation_name":"positively_regulates","term_name":"collateral sprouting","termid":"GO:0048668"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of collateral sprouting","synonyms":[{"name":"activation of collateral sprouting","type":"narrow"},{"name":"stimulation of collateral sprouting","type":"narrow"},{"name":"up regulation of collateral sprouting","type":"exact"},{"name":"up-regulation of collateral sprouting","type":"exact"},{"name":"upregulation of collateral sprouting","type":"exact"}],"termid":"GO:0048672"}


id: PBO:0086664
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Putative protein of unknown function; identified by expression profiling and mass spectrometry","termid":"PBO:0086664"}


id: GO:0035305
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process the stops, prevents, or reduces the frequency, rate or extent of removal of phosphate groups from a molecule.","definition_xrefs":["GOC:bf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of dephosphorylation","termid":"GO:0035303"},{"relation_name":"is_a","term_name":"negative regulation of phosphate metabolic process","termid":"GO:0045936"},{"relation_name":"negatively_regulates","term_name":"dephosphorylation","termid":"GO:0016311"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of dephosphorylation","synonyms":[{"name":"down regulation of dephosphorylation","type":"exact"},{"name":"down-regulation of dephosphorylation","type":"exact"},{"name":"downregulation of dephosphorylation","type":"exact"},{"name":"inhibition of dephosphorylation","type":"narrow"}],"termid":"GO:0035305"}


id: GO:1900739
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that modulates the frequency, rate or extent of protein insertion into mitochondrial membrane involved in apoptotic signaling pathway.","definition_xrefs":["GOC:mtg_apoptosis","GOC:TermGenie"],"gene_count":0,"genotype_count":0,"name":"obsolete regulation of protein insertion into mitochondrial membrane involved in apoptotic signaling pathway (obsolete GO:1900739)","synonyms":[{"name":"regulation of insertion of proteins into mitochondrial membranes during the induction of apoptosis","type":"narrow"},{"name":"regulation of protein insertion into mitochondrial membrane during induction of apoptosis","type":"narrow"},{"name":"regulation of protein insertion into mitochondrial membrane involved in induction of apoptosis","type":"narrow"},{"name":"regulation of protein insertion into mitochondrion membrane during induction of apoptosis","type":"narrow"}],"termid":"GO:1900739"}


id: FYPO:0001789
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to the nucleus is normal (i.e. indistinguishable from wild type) during a cellular response to oxidative stress.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal protein localization to nucleus during vegetative growth","termid":"FYPO:0000838"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001312"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0000138","FYPO:0000002","FYPO:0001320","FYPO:0000257","FYPO:0001312"],"is_obsolete":false,"name":"normal protein localization to nucleus during cellular response to oxidative stress","synonyms":[{"name":"normal protein localisation to nucleus during cellular response to oxidative stress","type":"exact"},{"name":"normal protein localization to nucleus during cellular response to oxidative stress during mitotic cell cycle","type":"related"},{"name":"normal protein localization to nucleus during cellular response to oxidative stress during vegetative growth","type":"exact"},{"name":"normal protein localization to nucleus during oxidative stress","type":"exact"},{"name":"normal protein localization to nucleus during oxidative stress response","type":"exact"}],"termid":"FYPO:0001789"}


id: GO:1905710
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of the passage or uptake of molecules by a membrane.","definition_xrefs":["PMID:27482894"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of membrane permeability","termid":"GO:0090559"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of membrane permeability","termid":"GO:1905710"}


id: PBO:0050138
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"high mobility group box 1 pseudogene 48","termid":"PBO:0050138"}


id: GO:0000366
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The joining together of two independently transcribed RNAs from two different genes, each of which also produces mRNA(s) via cis-splicing.","definition_xrefs":["PMID:12110900","GOC:krc","PMID:11726664"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mRNA trans splicing, via spliceosome","termid":"GO:0000365"},{"relation_name":"is_a","term_name":"alternative mRNA splicing, via spliceosome","termid":"GO:0000380"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0016071"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0016071","GO:0010467","GO:0008150"],"is_obsolete":false,"name":"intergenic mRNA trans splicing","synonyms":[{"name":"intergenic nuclear mRNA trans splicing","type":"exact"}],"termid":"GO:0000366"}


id: PBO:0060716
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NADH:ubiquinone oxidoreductase subunit A6","termid":"PBO:0060716"}


id: GO:0044447
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"OBSOLETE. Any constituent part of an axoneme, the bundle of microtubules and associated proteins that forms the core of cilia (also called flagella) in eukaryotic cells and is responsible for their movements.","definition_xrefs":["GOC:jl","GOC:cilia"],"gene_count":0,"genotype_count":0,"name":"obsolete axoneme part (obsolete GO:0044447)","synonyms":[{"name":"axonemal part","type":"exact"}],"termid":"GO:0044447"}


id: GO:0034141
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate, or extent of toll-like receptor 3 signaling pathway.","definition_xrefs":["PMID:17328678","PMID:16551253","GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of toll-like receptor 3 signaling pathway","termid":"GO:0034139"},{"relation_name":"is_a","term_name":"positive regulation of pattern recognition receptor signaling pathway","termid":"GO:0062208"},{"relation_name":"positively_regulates","term_name":"toll-like receptor 3 signaling pathway","termid":"GO:0034138"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0023052"},{"rel_name":"positively_regulates","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"positive regulation of toll-like receptor 3 signaling pathway","synonyms":[{"name":"positive regulation of TLR3 signaling pathway","type":"exact"},{"name":"positive regulation of toll-like receptor 3 signalling pathway","type":"exact"}],"termid":"GO:0034141"}


id: PBO:0046366
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ectonucleoside triphosphate diphosphohydrolase 3","termid":"PBO:0046366"}


id: PBO:0058562
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 6504","termid":"PBO:0058562"}


id: PBO:0086143
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein required for normal ER membrane biosynthesis in response to ER stress; ortholog of the FIT family of proteins involved in triglyceride droplet biosynthesis; human homolog FIT2/FITM2, a fatty acyl-CoA diphosphatase, complements the yeast null mutant; disputed role in the synthesis of inositol phospholipids from inositol; required for inositol prototrophy","termid":"PBO:0086143"}


id: PBO:0034624
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_protein_localization_to_nuclear_envelope_during_vegetative_growth","termid":"PBO:0034624"}


id: GO:0015278
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Enables the transmembrane transfer of a calcium ion by a channel that opens when a specific intracellular ligand has been bound by the channel complex or one of its constituent parts.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"intracellularly ligand-gated monoatomic ion channel activity","termid":"GO:0005217"},{"relation_name":"is_a","term_name":"ligand-gated calcium channel activity","termid":"GO:0099604"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0022857"}],"interesting_parent_ids":["GO:0022857","GO:0003674","GO:0005215"],"is_obsolete":false,"name":"intracellularly gated calcium channel activity","secondary_identifiers":["Reactome:R-HSA-9717215","GO:0005218"],"synonyms":[{"name":"calcium-release channel activity","type":"exact"},{"name":"intracellular ligand-gated calcium channel activity","type":"related"}],"termid":"GO:0015278"}


id: GO:0032767
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a protein or protein complex, in the presence of copper.","definition_xrefs":["GOC:ecd","PMID:16884690"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein binding","termid":"GO:0005515"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005515"}],"interesting_parent_ids":["GO:0003674","GO:0005488","GO:0005515"],"is_obsolete":false,"name":"copper-dependent protein binding","termid":"GO:0032767"}


id: PBO:0078762
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA methyltransferase subunit 11-2 pseudogene 5","termid":"PBO:0078762"}


id: PBO:0063751
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PHB1 pseudogene 16","termid":"PBO:0063751"}


id: PBO:0005246
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"meiotically upregulated gene Mug123","termid":"PBO:0005246"}


id: FYPO:0004188
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to the nucleus is abolished during a cellular response to hydroxyurea.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abolished protein localization to nucleus during vegetative growth","termid":"FYPO:0001424"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0005447","FYPO:0000138","FYPO:0001320","FYPO:0001985"],"is_obsolete":false,"name":"abolished protein localization to nucleus during cellular response to hydroxyurea","synonyms":[{"name":"abolished protein localisation to nucleus during cellular response to hydroxyurea","type":"exact"},{"name":"abolished protein localization to nucleus during cellular response to HU","type":"exact"},{"name":"abolished protein localization to nucleus during cellular response to hydroxyurea during mitotic cell cycle","type":"related"},{"name":"abolished protein localization to nucleus during cellular response to hydroxyurea during vegetative growth","type":"exact"},{"name":"nuclear exclusion during cellular response to hydroxyurea","type":"related"},{"name":"nuclear protein exclusion during cellular response to hydroxyurea","type":"related"},{"name":"protein localization to nucleus abolished during cellular response to hydroxyurea","type":"exact"}],"termid":"FYPO:0004188"}


id: PR:G2TRP0
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- tam7 gene.","definition_xrefs":["PRO:DNx","UniProtKB:G2TRP0"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized protein tam7 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC409.23","synonyms":[{"name":"Spom972h-tam7","type":"exact"},{"name":"transcripts altered in meiosis protein 7 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:G2TRP0"}


id: SO:0002071
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A CDS that is supported by proteomics data.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"CDS_supported_by_sequence_similarity_data","termid":"SO:1001251"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CDS_supported_by_peptide_spectrum_match","termid":"SO:0002071"}


id: GO:0071617
data:
  {"annotated_genes":["SJAG_04041","SJAG_04323","SJAG_01957","SJAG_04792"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[75869,71636,85759],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0003841"},{"annotations":[70854],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0042171"}]},"cv_name":"molecular_function","definition":"Catalysis of the transfer of acyl groups from an acyl-CoA to a lysophospholipid.","definition_xrefs":["GOC:cjk"],"direct_ancestors":[{"relation_name":"is_a","term_name":"acyltransferase activity, transferring groups other than amino-acyl groups","termid":"GO:0016747"}],"gene_count":4,"genes_by_uniquename":{"SJAG_01957":null,"SJAG_04041":null,"SJAG_04323":null,"SJAG_04792":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016746"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016740"}],"interesting_parent_ids":["GO:0016746","GO:0003674","GO:0016740","GO:0003824"],"is_obsolete":false,"name":"lysophospholipid acyltransferase activity","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"termid":"GO:0071617","terms_by_termid":{"GO:0003841":null,"GO:0042171":null}}


id: GO:1904803
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any regulation of translation that is involved in cellular response to UV.","definition_xrefs":["PMID:17369398","GOC:TermGenie","GO_REF:0000060"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of translation","termid":"GO:0006417"},{"relation_name":"part_of","term_name":"cellular response to UV","termid":"GO:0034644"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0010467"],"is_obsolete":false,"name":"regulation of translation involved in cellular response to UV","synonyms":[{"name":"regulation of protein anabolism involved in cellular response to UV","type":"exact"},{"name":"regulation of protein biosynthesis involved in cellular response to UV","type":"exact"},{"name":"regulation of protein formation involved in cellular response to UV","type":"exact"},{"name":"regulation of protein synthesis involved in cellular response to UV","type":"exact"},{"name":"regulation of translation involved in cellular response to UV light stimulus","type":"exact"},{"name":"regulation of translation involved in cellular response to UV radiation stimulus","type":"exact"},{"name":"regulation of translation involved in cellular response to ultraviolet light stimulus","type":"exact"},{"name":"regulation of translation involved in cellular response to ultraviolet radiation stimulus","type":"exact"}],"termid":"GO:1904803"}


id: GO:1905900
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of smooth muscle tissue development.","definition_xrefs":["PMID:14709716","GO_REF:0000058","GOC:bhm","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of muscle tissue development","termid":"GO:1901862"},{"relation_name":"is_a","term_name":"regulation of smooth muscle tissue development","termid":"GO:1905899"},{"relation_name":"negatively_regulates","term_name":"smooth muscle tissue development","termid":"GO:0048745"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of smooth muscle tissue development","synonyms":[{"name":"down regulation of smooth muscle tissue development","type":"exact"},{"name":"down-regulation of smooth muscle tissue development","type":"exact"},{"name":"downregulation of smooth muscle tissue development","type":"exact"},{"name":"inhibition of smooth muscle tissue development","type":"narrow"}],"termid":"GO:1905900"}


id: GO:0019961
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to an interferon, a protein produced by the immune systems of many animals in response to a challenge by a foreign agent.","definition_xrefs":["PMID:9607096","Wikipedia:Interferon"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cytokine binding","termid":"GO:0019955"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005515"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005488"}],"interesting_parent_ids":["GO:0003674","GO:0005515","GO:0005488"],"is_obsolete":false,"name":"interferon binding","synonyms":[{"name":"IFN binding","type":"exact"}],"termid":"GO:0019961"}


id: FYPO:0005262
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A vegetative cell population growth phenotype in which cell growth is increased relative to normal in a medium containing maltose as the carbon source.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased vegetative cell population growth","termid":"FYPO:0004557"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000139"},{"rel_name":"is_a","termid":"FYPO:0002057"},{"rel_name":"is_a","termid":"FYPO:0000003"},{"rel_name":"is_a","termid":"FYPO:0002058"}],"interesting_parent_ids":["FYPO:0002057","FYPO:0000139","FYPO:0005447","FYPO:0002058","FYPO:0001985","FYPO:0000003"],"is_obsolete":false,"name":"increased cell population growth on maltose carbon source","synonyms":[{"name":"increased growth on maltose carbon source","type":"broad"},{"name":"increased vegetative cell growth on maltose carbon source","type":"exact"}],"termid":"FYPO:0005262"}


id: GO:0061746
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: GTP + H2O = GDP + phosphate; this reaction requires the presence of single-stranded DNA, and it drives another reaction.","definition_xrefs":["PMID:26277776","GOC:dph"],"gene_count":0,"genotype_count":0,"name":"obsolete single-stranded DNA-dependent GTPase activity (obsolete GO:0061746)","termid":"GO:0061746"}


id: GO:0039643
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The region of a host cell that contains the viral genome.","definition_xrefs":["GOC:jl","GOC:bf","GOC:bm"],"direct_ancestors":[{"relation_name":"is_a","term_name":"host intracellular part","termid":"GO:0033646"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"host cell viral nucleoid","termid":"GO:0039643"}


id: PBO:0002793
data:
  {"annotation_feature_type":"gene","cv_name":"EC numbers","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"3.1.3.4","termid":"PBO:0002793"}


id: PR:Q9USK6
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- cbp3 gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q9USK6"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CBP3-like protein (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC4B3.17","synonyms":[{"name":"Spom972h-cbp3","type":"exact"}],"termid":"PR:Q9USK6"}


id: PBO:0057084
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 181c","termid":"PBO:0057084"}


id: PR:Q10086
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- toe4 gene.","definition_xrefs":["UniProtKB:Q10086","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized transcriptional regulatory protein C11D3.07c (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC11D3.07c","synonyms":[{"name":"Spom972h-toe4","type":"exact"}],"termid":"PR:Q10086"}


id: PBO:0027600
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-delayed_onset_of_actomyosin_contractile_ring_contraction","termid":"PBO:0027600"}


id: PBO:0004474
data:
  {"annotation_feature_type":"gene","cv_name":"EC numbers","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"4.2.1.70","termid":"PBO:0004474"}


id: PBO:0065542
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"phosphotriesterase related","termid":"PBO:0065542"}


id: PBO:0075517
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"spindle apparatus coiled-coil protein 1","termid":"PBO:0075517"}


id: GO:0031986
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A leucoplast in which protein is stored.","definition_xrefs":["GOC:pz"],"direct_ancestors":[{"relation_name":"is_a","term_name":"leucoplast","termid":"GO:0009516"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005737"}],"interesting_parent_ids":["GO:0005737","GO:0005575"],"is_obsolete":false,"name":"proteinoplast","secondary_identifiers":["Wikipedia:Proteinoplast"],"termid":"GO:0031986"}


id: GO:0061686
data:
  {"annotated_genes":["SJAG_00832"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[99114],"is_not":false,"summary":null,"term":"GO:0061686"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: L-cysteine + N-alpha,N-alpha,N-alpha-trimethyl-L-histidine (hercynine) + O2 = hercynylcysteine sulfoxide + H2O.","definition_xrefs":["RHEA:42704","PMID:24828577","PMID:4276459","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with oxygen as acceptor","termid":"GO:0046993"}],"gene_count":1,"genes_by_uniquename":{"SJAG_00832":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016491"],"is_obsolete":false,"name":"hercynylcysteine sulfoxide synthase activity","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["EC:1.21.3.10"],"synonyms":[{"name":"hercynylcysteine S-oxide synthase","type":"exact"},{"name":"hercynylcysteine sulfoxide synthase","type":"exact"}],"termid":"GO:0061686","terms_by_termid":{"GO:0061686":null}}


id: PBO:0039535
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ankyrin repeat domain 36","termid":"PBO:0039535"}


id: PBO:0040579
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"BAALC antisense RNA 1","termid":"PBO:0040579"}


id: PBO:0085289
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Peroxisome-specific receptor important for peroxisome inheritance; co-fractionates with peroxisome membranes and co-localizes with peroxisomes in vivo; physically interacts with the myosin V motor Myo2p; INP2 is not an essential gene","termid":"PBO:0085289"}


id: PBO:0030768
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_cellular_response_to_stress_during_vegetative_growth","termid":"PBO:0030768"}


id: GO:0006316
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Lateral transfer of a group I intron to a homologous allele that lacks the intron, mediated by a site-specific endonuclease encoded within the mobile intron; group I introns are self-splicing introns that use guanosine as a cofactor in the splicing reaction.","definition_xrefs":["GOC:mcc","ISBN:0716743663","PMID:10487208"],"direct_ancestors":[{"relation_name":"is_a","term_name":"intron homing","termid":"GO:0006314"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006310"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006259"}],"interesting_parent_ids":["GO:0006259","GO:0006310","GO:0008150"],"is_obsolete":false,"name":"movement of group I intron","termid":"GO:0006316"}


id: PBO:0074109
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"solute carrier family 29 member 1 (Augustine blood group)","termid":"PBO:0074109"}


id: GO:0015530
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Enables the transfer of shikimate from one side of a membrane to the other. Shikimate is an important intermediate in the biosynthesis of aromatic amino acids.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"monocarboxylic acid transmembrane transporter activity","termid":"GO:0008028"},{"relation_name":"is_a","term_name":"organic hydroxy compound transmembrane transporter activity","termid":"GO:1901618"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005215"}],"interesting_parent_ids":["GO:0003674","GO:0005215","GO:0022857"],"is_obsolete":false,"name":"shikimate transmembrane transporter activity","termid":"GO:0015530"}


id: GO:0090254
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which a cell elongates and contributes to imaginal disc-derived wing morphogenesis.","definition_xrefs":["GOC:ascb_2009","GOC:dph","GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"unidimensional cell growth","termid":"GO:0009826"},{"relation_name":"is_a","term_name":"post-embryonic animal morphogenesis","termid":"GO:0009886"},{"relation_name":"part_of","term_name":"imaginal disc-derived wing morphogenesis","termid":"GO:0007476"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cell elongation involved in imaginal disc-derived wing morphogenesis","termid":"GO:0090254"}


id: PBO:0047198
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"family with sequence similarity 216 member A","termid":"PBO:0047198"}


id: GO:0033920
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: a 6-phospho-beta-D-galactoside + H2O = 6-phospho-D-galactose + an alcohol.","definition_xrefs":["RHEA:24568"],"direct_ancestors":[{"relation_name":"is_a","term_name":"galactosidase activity","termid":"GO:0015925"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016798"},{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016787","GO:0016798","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"6-phospho-beta-galactosidase activity","secondary_identifiers":["EC:3.2.1.85","MetaCyc:6-PHOSPHO-BETA-GALACTOSIDASE-RXN"],"synonyms":[{"name":"6-phospho-beta-D-galactosidase activity","type":"related"},{"name":"6-phospho-beta-D-galactoside 6-phosphogalactohydrolase activity","type":"related"},{"name":"beta-D-phosphogalactoside galactohydrolase activity","type":"related"},{"name":"phospho-beta-D-galactosidase activity","type":"related"},{"name":"phospho-beta-galactosidase activity","type":"related"}],"termid":"GO:0033920"}


id: PBO:0078589
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tripartite motif containing 60 pseudogene 2, Y-linked","termid":"PBO:0078589"}


id: GO:0015360
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: acetate(out) + H+(out) = acetate(in) + H+(in).","definition_xrefs":["TC:2.A.44.4.1"],"direct_ancestors":[{"relation_name":"is_a","term_name":"solute:proton symporter activity","termid":"GO:0015295"},{"relation_name":"is_a","term_name":"acetate:monoatomic cation symporter activity","termid":"GO:0043893"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0022857"}],"interesting_parent_ids":["GO:0005215","GO:0003674","GO:0022857"],"is_obsolete":false,"name":"acetate:proton symporter activity","secondary_identifiers":["GO:0015357"],"synonyms":[{"name":"acetate:hydrogen symporter activity","type":"exact"},{"name":"hydrogen:acetate symporter activity","type":"exact"}],"termid":"GO:0015360"}


id: GO:0031097
data:
  {"annotated_genes":["SJAG_03119","SJAG_04280","SJAG_03637","SJAG_04703","SJAG_02431","SJAG_00185","SJAG_04982","SJAG_03088","SJAG_00773","SJAG_04666","SJAG_03596","SJAG_03748","SJAG_03703","SJAG_03936","SJAG_01658","SJAG_01665","SJAG_04001","SJAG_00228","SJAG_01456","SJAG_00663","SJAG_04486","SJAG_01143","SJAG_00279","SJAG_00807","SJAG_02700","SJAG_03704","SJAG_02838","SJAG_02241","SJAG_01277","SJAG_04781","SJAG_05290","SJAG_00118","SJAG_03564","SJAG_03011","SJAG_02368","SJAG_04050","SJAG_01889","SJAG_04566","SJAG_03581","SJAG_02169","SJAG_00700","SJAG_04522","SJAG_01732","SJAG_03374","SJAG_04776","SJAG_04462","SJAG_02831","SJAG_01964","SJAG_03602","SJAG_02645","SJAG_01448","SJAG_04375","SJAG_00152","SJAG_03025","SJAG_04498"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[72045,73489,83324,83930,84239,88064,88181,90198,90969,93218,93294,93489,94450,94865,95421,98146,98548,98732,100585,100784,103033,105880,106114,106155,108375,111444,113103,114042],"is_not":false,"summary":null,"term":"GO:0031097"},{"annotations":[93992,94549,98963,111266],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0110115"},{"annotations":[96478,108097,103371,95629,99405,93466,97272,113815,113084,93391],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0036391"},{"annotations":[84048,100618,96214,112270,113085,93599,87973,91901,84705,96779,86422,101637,88225,89497],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0071341"}]},"cv_name":"cellular_component","definition":"A medial cortical band overlaying the nucleus which acts as a landmark for contractile ring positioning and plays a role in cell cycle regulation.","definition_xrefs":["PMID:15572668","GOC:vw","PMID:19474789"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell cortex region","termid":"GO:0099738"},{"relation_name":"part_of","term_name":"cell division site","termid":"GO:0032153"}],"gene_count":55,"genes_by_uniquename":{"SJAG_00118":null,"SJAG_00152":null,"SJAG_00185":null,"SJAG_00228":null,"SJAG_00279":null,"SJAG_00663":null,"SJAG_00700":null,"SJAG_00773":null,"SJAG_00807":null,"SJAG_01143":null,"SJAG_01277":null,"SJAG_01448":null,"SJAG_01456":null,"SJAG_01658":null,"SJAG_01665":null,"SJAG_01732":null,"SJAG_01889":null,"SJAG_01964":null,"SJAG_02169":null,"SJAG_02241":null,"SJAG_02368":null,"SJAG_02431":null,"SJAG_02645":null,"SJAG_02700":null,"SJAG_02831":null,"SJAG_02838":null,"SJAG_03011":null,"SJAG_03025":null,"SJAG_03088":null,"SJAG_03119":null,"SJAG_03374":null,"SJAG_03564":null,"SJAG_03581":null,"SJAG_03596":null,"SJAG_03602":null,"SJAG_03637":null,"SJAG_03703":null,"SJAG_03704":null,"SJAG_03748":null,"SJAG_03936":null,"SJAG_04001":null,"SJAG_04050":null,"SJAG_04280":null,"SJAG_04375":null,"SJAG_04462":null,"SJAG_04486":null,"SJAG_04498":null,"SJAG_04522":null,"SJAG_04566":null,"SJAG_04666":null,"SJAG_04703":null,"SJAG_04776":null,"SJAG_04781":null,"SJAG_04982":null,"SJAG_05290":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0005938"},{"rel_name":"is_a","termid":"GO:0005737"}],"interesting_parent_ids":["GO:0005938","GO:0005575","GO:0005737"],"is_obsolete":false,"name":"medial cortex","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"synonyms":[{"name":"medial ring","type":"exact"}],"termid":"GO:0031097","terms_by_termid":{"GO:0031097":null,"GO:0036391":null,"GO:0071341":null,"GO:0110115":null}}


id: GO:0098946
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"OBSOLETE. The component of the presynaptic endocytic zone membrane consisting of the gene products and protein complexes having either part of their peptide sequence embedded in the hydrophobic region of the membrane or some other covalently attached group such as a GPI anchor that is similarly embedded in the membrane.","definition_xrefs":["GOC:dos","GOC:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete intrinsic component of presynaptic endocytic zone membrane (obsolete GO:0098946)","synonyms":[{"name":"intrinsic to presynaptic acive zone membrane","type":"narrow"}],"termid":"GO:0098946"}


id: PBO:0013038
data:
  {"annotation_feature_type":"gene","cv_name":"complementation","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"functionally complements S. cerevisiae TPP1","termid":"PBO:0013038"}


id: PBO:0029035
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-inviable_after_spore_germination,_without_cell_division,_multinucleate_cell_with_elongated_germ_tube","termid":"PBO:0029035"}


id: GO:1900914
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of octadecene biosynthetic process.","definition_xrefs":["GOC:TermGenie","GOC:mengo_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of cellular biosynthetic process","termid":"GO:0031326"},{"relation_name":"is_a","term_name":"regulation of olefin biosynthetic process","termid":"GO:1900911"},{"relation_name":"is_a","term_name":"regulation of octadecene metabolic process","termid":"GO:1900917"},{"relation_name":"regulates","term_name":"octadecene biosynthetic process","termid":"GO:1900682"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of octadecene biosynthetic process","synonyms":[{"name":"regulation of 1-octadecene biosynthetic process","type":"exact"},{"name":"regulation of octadecene anabolism","type":"exact"},{"name":"regulation of octadecene biosynthesis","type":"exact"},{"name":"regulation of octadecene formation","type":"exact"},{"name":"regulation of octadecene synthesis","type":"exact"}],"termid":"GO:1900914"}


id: PBO:0081903
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein 860","termid":"PBO:0081903"}


id: PBO:0069727
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 1008, pseudogene","termid":"PBO:0069727"}


id: GO:0034298
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The formation of conidia by the conversion of a pre-existing hypha. An arthrospore is produced by the last cell on a hypha breaking off and dispersing. Usually the walls thicken and the cell(s) separates before swelling of each spore. Sometimes further septa form in each cell prior to disarticulation.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"conidium formation","termid":"GO:0048315"},{"relation_name":"is_a","term_name":"anatomical structure formation involved in morphogenesis","termid":"GO:0048646"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"arthrospore formation","synonyms":[{"name":"arthroconidium formation","type":"exact"}],"termid":"GO:0034298"}


id: PBO:0078599
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tripartite motif containing 60 pseudogene 12, Y-linked","termid":"PBO:0078599"}


id: GO:0031453
data:
  {"annotated_genes":["SJAG_02990"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[94519],"is_not":false,"summary":null,"term":"GO:0031453"}]},"cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of heterochromatin formation.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of heterochromatin formation","termid":"GO:0031445"},{"relation_name":"is_a","term_name":"positive regulation of cellular component biogenesis","termid":"GO:0044089"},{"relation_name":"is_a","term_name":"positive regulation of heterochromatin organization","termid":"GO:0120263"},{"relation_name":"positively_regulates","term_name":"heterochromatin formation","termid":"GO:0031507"}],"gene_count":1,"genes_by_uniquename":{"SJAG_02990":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"positively_regulates","termid":"GO:0044085"},{"rel_name":"regulates","termid":"GO:0044085"},{"rel_name":"regulates","termid":"GO:0006325"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0010467"},{"rel_name":"positively_regulates","termid":"GO:0006325"}],"interesting_parent_ids":["GO:0006325","GO:0044085","GO:0008150","GO:0010467"],"is_obsolete":false,"name":"positive regulation of heterochromatin formation","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"activation of heterochromatin formation","type":"narrow"},{"name":"positive regulation of heterochromatin assembly","type":"exact"},{"name":"stimulation of heterochromatin formation","type":"narrow"},{"name":"up regulation of heterochromatin formation","type":"exact"},{"name":"up-regulation of heterochromatin formation","type":"exact"},{"name":"upregulation of heterochromatin formation","type":"exact"}],"termid":"GO:0031453","terms_by_termid":{"GO:0031453":null}}


id: FYPO:0004238
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which acetylation of lysine at position 4 of histone H3 occurs to a greater extent than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased histone H3 acetylation during vegetative growth","termid":"FYPO:0002363"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0002494"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0002274"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0002274","FYPO:0005447","FYPO:0000002","FYPO:0001320","FYPO:0002494"],"is_obsolete":false,"name":"increased histone H3-K4 acetylation during vegetative growth","synonyms":[{"name":"increased histone H3-K4 acetylation during mitotic cell cycle","type":"related"},{"name":"increased histone H3K4 acetylation during vegetative growth","type":"exact"}],"termid":"FYPO:0004238"}


id: PBO:0061590
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"neurotrophic receptor tyrosine kinase 1","termid":"PBO:0061590"}


id: GO:0061916
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"That part of the axonal growth cone which represents the distal part of the structure.","definition_xrefs":["PMID:16098134"],"direct_ancestors":[{"relation_name":"is_a","term_name":"growth cone leading edge","termid":"GO:0061850"},{"relation_name":"part_of","term_name":"axonal growth cone","termid":"GO:0044295"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"leading edge of axonal growth cone","synonyms":[{"name":"axonal growth cone leading edge","type":"exact"},{"name":"distal tip of axonal growth cone","type":"exact"}],"termid":"GO:0061916"}


id: PBO:0078062
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"T cell receptor alpha joining 52","termid":"PBO:0078062"}


id: PBO:0046259
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"embigin","termid":"PBO:0046259"}


id: FYPO:0001207
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A phenotype observed in the vegetative growth phase of the life cycle in which cells show increased sensitivity to raffinose. Cells stop growing (and may die) at a concentration of raffinose that allows wild type cells to grow.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased sensitivity to chemical during vegetative growth","termid":"FYPO:0000127"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000139"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0002683"},{"rel_name":"is_a","termid":"FYPO:0000003"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0000003","FYPO:0005447","FYPO:0001985","FYPO:0000139","FYPO:0002683"],"is_obsolete":false,"name":"sensitive to raffinose","synonyms":[{"name":"hypersensitive to raffinose","type":"exact"},{"name":"sensitive to raffinose during mitotic cell cycle","type":"related"},{"name":"sensitive to raffinose during vegetative growth","type":"exact"}],"termid":"FYPO:0001207"}


id: PBO:0030020
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-viable_thin_vegetative_cell","termid":"PBO:0030020"}


id: PBO:0085005
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Negative regulator of genes in multiple nitrogen degradation pathways; expression is regulated by nitrogen levels and by Gln3p; member of the GATA-binding family, forms homodimers and heterodimers with Gzf3p; DAL80 has a paralog, GZF3, that arose from the whole genome duplication","termid":"PBO:0085005"}


id: GO:0050428
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of 3'-phosphoadenosine 5'-phosphosulfate, a naturally occurring mixed anhydride. It is an intermediate in the formation of a variety of sulfo compounds in biological systems.","definition_xrefs":["ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"purine ribonucleotide biosynthetic process","termid":"GO:0009152"},{"relation_name":"is_a","term_name":"purine ribonucleoside bisphosphate biosynthetic process","termid":"GO:0034036"},{"relation_name":"is_a","term_name":"sulfur compound biosynthetic process","termid":"GO:0044272"},{"relation_name":"is_a","term_name":"3'-phosphoadenosine 5'-phosphosulfate metabolic process","termid":"GO:0050427"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0055086"},{"rel_name":"is_a","termid":"GO:0006790"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0044281","GO:0055086","GO:0006790"],"is_obsolete":false,"name":"3'-phosphoadenosine 5'-phosphosulfate biosynthetic process","synonyms":[{"name":"3'-phosphoadenosine 5'-phosphosulfate anabolism","type":"exact"},{"name":"3'-phosphoadenosine 5'-phosphosulfate biosynthesis","type":"exact"},{"name":"3'-phosphoadenosine 5'-phosphosulfate formation","type":"exact"},{"name":"3'-phosphoadenosine 5'-phosphosulfate synthesis","type":"exact"},{"name":"3'-phosphoadenosine 5'-phosphosulphate biosynthesis","type":"exact"},{"name":"3'-phosphoadenosine 5'-phosphosulphate biosynthetic process","type":"exact"},{"name":"3'-phosphoadenylyl-sulfate biosynthesis","type":"exact"},{"name":"3'-phosphoadenylyl-sulfate biosynthetic process","type":"exact"},{"name":"PAPS biosynthesis","type":"exact"},{"name":"PAPS biosynthetic process","type":"exact"},{"name":"adenosine 3'-phosphate 5'-phosphosulfate biosynthesis","type":"exact"},{"name":"adenosine 3'-phosphate 5'-phosphosulfate biosynthetic process","type":"exact"},{"name":"phosphoadenosine phosphosulfate biosynthesis","type":"exact"},{"name":"phosphoadenosine phosphosulfate biosynthetic process","type":"exact"}],"termid":"GO:0050428"}


id: PBO:0072084
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein S12 pseudogene 14","termid":"PBO:0072084"}


id: PBO:0050859
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ICMT divergent transcript","termid":"PBO:0050859"}


id: PBO:0067630
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 802, pseudogene","termid":"PBO:0067630"}


id: GO:0015433
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: peptide antigen(in) + ATP = peptide antigen(out) + ADP + phosphate.","definition_xrefs":["TC:3.A.1.209.1"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ABC-type peptide transporter activity","termid":"GO:0015440"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0022857","GO:0005215","GO:0003674"],"is_obsolete":false,"name":"ABC-type peptide antigen transporter activity","secondary_identifiers":["Reactome:R-HSA-1236949","Reactome:R-HSA-983144"],"synonyms":[{"name":"ATP-dependent peptide antigen transmembrane transporter activity","type":"exact"},{"name":"ATPase-coupled peptide antigen transmembrane transporter activity","type":"related"},{"name":"major histocompatibility peptide transporter activity","type":"exact"},{"name":"peptide antigen ABC transporter","type":"narrow"},{"name":"peptide antigen transporter activity","type":"broad"},{"name":"peptide antigen-transporting ATPase activity","type":"exact"}],"termid":"GO:0015433"}


id: PBO:0058086
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 4303","termid":"PBO:0058086"}


id: PBO:0047898
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"fragile site, aphidicolin type, common, fra(7)(q21.2)","termid":"PBO:0047898"}


id: PBO:0091574
data:
  {"annotation_feature_type":"gene","cv_name":"complementation","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"not functionally complemented by human HUS1","termid":"PBO:0091574"}


id: PBO:0076916
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transcription factor AP-2 delta","termid":"PBO:0076916"}


id: FYPO:0003929
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype in which spores germinate to a lower extent than wild type following exposure to ionizing radiation.","definition_xrefs":["PMID:24847916","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal cell phenotype","termid":"FYPO:0003037"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000002"],"is_obsolete":false,"name":"spores sensitive to ionizing radiation","synonyms":[{"name":"sensitive to ionizing radiation in the spore phase","type":"exact"},{"name":"spores sensitive to IR","type":"exact"}],"termid":"FYPO:0003929"}


id: GO:0061975
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of articular cartilage over time, from its formation to the mature structure.","definition_xrefs":["PMID:20679519","PMID:20097540"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cartilage development","termid":"GO:0051216"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"articular cartilage development","synonyms":[{"name":"articular cartilage of joint development","type":"exact"}],"termid":"GO:0061975"}


id: PBO:0041752
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cullin associated and neddylation dissociated 2 (putative)","termid":"PBO:0041752"}


id: FYECO:0000286
data:
  {"annotation_feature_type":"gene","cv_name":"fission_yeast_phenotype_condition","definition":"Experiments were performed in medium containing glucose (typically <2% w/v), salts, water and with no adenine.","definition_xrefs":["PomBase:al"],"direct_ancestors":[{"relation_name":"is_a","term_name":"grouping defined medium","termid":"FYECO:0000013"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glucose MM, no adenine","termid":"FYECO:0000286"}


id: GO:0140475
data:
  {"annotated_genes":["SJAG_02246","SJAG_07018","SJAG_03116","SJAG_02795","SJAG_05196","SJAG_04558","SJAG_03200"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[93845,95381,96510,98538],"is_not":false,"summary":null,"term":"GO:0140475"},{"annotations":[98311,108169,78838],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0106166"}]},"cv_name":"molecular_function","definition":"The binding activity of a protein that brings together the spindle pole body and one or more other molecules, permitting them to function in a coordinated way.","definition_xrefs":["PMID:19942852"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cytoskeletal anchor activity","termid":"GO:0008093"}],"gene_count":7,"genes_by_uniquename":{"SJAG_02246":null,"SJAG_02795":null,"SJAG_03116":null,"SJAG_03200":null,"SJAG_04558":null,"SJAG_05196":null,"SJAG_07018":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0060090"},{"rel_name":"is_a","termid":"GO:0008093"},{"rel_name":"is_a","termid":"GO:0030674"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0030674","GO:0003674","GO:0060090","GO:0008093"],"is_obsolete":false,"name":"spindle pole body anchor activity","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"termid":"GO:0140475","terms_by_termid":{"GO:0106166":null,"GO:0140475":null}}


id: PBO:0062745
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 52 subfamily I member 2","termid":"PBO:0062745"}


id: PBO:0054948
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2362","termid":"PBO:0054948"}


id: PBO:0040005
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ADP ribosylation factor like GTPase 14 effector protein like","termid":"PBO:0040005"}


id: GO:0043202
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The volume enclosed within the lysosomal membrane.","definition_xrefs":["PMID:15213228","GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"vacuolar lumen","termid":"GO:0005775"},{"relation_name":"part_of","term_name":"lysosome","termid":"GO:0005764"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"part_of","termid":"GO:0005773"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575","GO:0005773","GO:0005737"],"is_obsolete":false,"name":"lysosomal lumen","termid":"GO:0043202"}


id: PBO:0090981
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"HOPs/CORVET complex ubiquitin protein ligase E3 subunit Vps11","termid":"PBO:0090981"}


id: PR:Q92376
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- pkl1 gene.","definition_xrefs":["UniProtKB:Q92376","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"kinesin-like protein 1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC3A11.14c","synonyms":[{"name":"Spom972h-pkl1","type":"exact"}],"termid":"PR:Q92376"}


id: PBO:0044047
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cysteine and glycine rich protein 1","termid":"PBO:0044047"}


id: FYPO:0002348
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cytokinesis phenotype observed in the vegetative growth phase of the life cycle in which stress granule assembly does not occur.","definition_xrefs":["PMID:21098141","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal stress granule assembly during vegetative growth","termid":"FYPO:0002347"},{"relation_name":"is_a","term_name":"abolished cellular process","termid":"FYPO:0005449"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001320","FYPO:0005447","FYPO:0001985"],"is_obsolete":false,"name":"abolished stress granule assembly during vegetative growth","synonyms":[{"name":"abolished cytoplasmic stress granule assembly during vegetative growth","type":"exact"},{"name":"abolished stress granule assembly during mitotic cell cycle","type":"related"},{"name":"abolished stress granule formation during vegetative growth","type":"exact"}],"termid":"FYPO:0002348"}


id: PBO:0088299
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DUF4646 family conserved fungal protein","termid":"PBO:0088299"}


id: PBO:0081196
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger imprinted 2","termid":"PBO:0081196"}


id: PBO:0041893
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"caveolin 2","termid":"PBO:0041893"}


id: PBO:0090777
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nuclear membrane organization protein Apq12","termid":"PBO:0090777"}


id: GO:1902673
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"Any ciliary basal body that is part of a left posteriolateral flagellum found in Giardia species (trophozoite stage).","definition_xrefs":["GOC:giardia","GOC:TermGenie","GO_REF:0000064","ISBN:9780124260207","PMID:5961344","PMID:16607022"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ciliary basal body","termid":"GO:0036064"},{"relation_name":"part_of","term_name":"left posteriolateral flagellum","termid":"GO:0097556"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0015630"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575","GO:0015630"],"is_obsolete":false,"name":"left posteriolateral basal body","synonyms":[{"name":"cilial basal body of left posteriolateral cilium","type":"exact"},{"name":"cilial basal body of left posteriolateral flagellum","type":"exact"},{"name":"cilial basal body of left posterolateral cilium","type":"exact"},{"name":"cilial basal body of left posterolateral flagellum","type":"exact"},{"name":"ciliary basal body of left posteriolateral cilium","type":"exact"},{"name":"ciliary basal body of left posteriolateral flagellum","type":"exact"},{"name":"ciliary basal body of left posterolateral cilium","type":"exact"},{"name":"ciliary basal body of left posterolateral flagellum","type":"exact"},{"name":"cilium basal body of left posteriolateral cilium","type":"exact"},{"name":"cilium basal body of left posteriolateral flagellum","type":"exact"},{"name":"cilium basal body of left posterolateral cilium","type":"exact"},{"name":"cilium basal body of left posterolateral flagellum","type":"exact"},{"name":"left posteriolateral flagellum ciliary basal body","type":"exact"},{"name":"microtubule basal body of left posteriolateral cilium","type":"exact"},{"name":"microtubule basal body of left posteriolateral flagellum","type":"exact"},{"name":"microtubule basal body of left posterolateral cilium","type":"exact"},{"name":"microtubule basal body of left posterolateral flagellum","type":"exact"}],"termid":"GO:1902673"}


id: GO:0019465
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The exchange of the amino group of aspartate, the anion derived from aspartic acid, for another amino group.","definition_xrefs":["GOC:go_curators","ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"aspartate catabolic process","termid":"GO:0006533"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044248"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006520"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0006520","GO:0044281","GO:0008150","GO:0044248"],"is_obsolete":false,"name":"aspartate transamidation","secondary_identifiers":["MetaCyc:ASPARTATESYN-PWY","MetaCyc:ASPARTATE-DEG1-PWY"],"termid":"GO:0019465"}


id: GO:0000402
data:
  {"annotated_genes":["SJAG_04752"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[74718],"is_not":false,"summary":null,"term":"GO:0000402"}]},"cv_name":"molecular_function","definition":"Binding to a DNA segment containing the crossed form of a four-way junction, also known as a Holliday junction, a structure where two DNA double strands are held together by reciprocal exchange of two of the four strands, one strand each from the two original helices. The crossed form of a four-way junction cannot be diagrammed without any of the strands crossing over, and instead contains a single crossover between two of the strands.","definition_xrefs":["PMID:15563464","ISBN:0815332181","GOC:krc"],"direct_ancestors":[{"relation_name":"is_a","term_name":"four-way junction DNA binding","termid":"GO:0000400"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04752":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003677"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005488"}],"interesting_parent_ids":["GO:0005488","GO:0003677","GO:0003674"],"is_obsolete":false,"name":"crossed form four-way junction DNA binding","references_by_uniquename":{"GO_REF:0000033":null},"synonyms":[{"name":"crossed form Holliday junction binding","type":"exact"}],"termid":"GO:0000402","terms_by_termid":{"GO:0000402":null}}


id: SO:0001323
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"Archaeosine is a modified 7-deazoguanosine.","direct_ancestors":[{"relation_name":"is_a","term_name":"seven_deazaguanosine","termid":"SO:0001316"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"archaeosine","secondary_identifiers":["RNAMOD:049"],"synonyms":[{"name":"G+","type":"exact"}],"termid":"SO:0001323"}


id: PBO:0002135
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ER protein translocation subcomplex subunit Sec62 (predicted)","termid":"PBO:0002135"}


id: PBO:0064934
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PPT2-EGFL8 readthrough (NMD candidate)","termid":"PBO:0064934"}


id: GO:0055107
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The directed movement of proteins from the Golgi to a secretory granule. The secretory granule is a membrane-bounded particle, usually protein, formed in the granular endoplasmic reticulum and the Golgi complex.","definition_xrefs":["GOC:curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"intracellular transport","termid":"GO:0046907"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0006810","GO:0051179","GO:0008150"],"is_obsolete":false,"name":"Golgi to secretory granule transport","termid":"GO:0055107"}


id: PBO:0048660
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glycerol kinase 2","termid":"PBO:0048660"}


id: PBO:0054876
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2290","termid":"PBO:0054876"}


id: GO:0030878
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of the thyroid gland over time, from its formation to the mature structure. The thyroid gland is an endoderm-derived gland that produces thyroid hormone.","definition_xrefs":["GOC:dgh"],"direct_ancestors":[{"relation_name":"is_a","term_name":"gland development","termid":"GO:0048732"},{"relation_name":"part_of","term_name":"endocrine system development","termid":"GO:0035270"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"thyroid gland development","termid":"GO:0030878"}


id: GO:0020039
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The structure enclosing certain parasite cells such as certain apicomplexa and Euglenozoa; consists of the cell membrane with its associated infrastructure of microtubules, microfilaments and other organelles.","definition_xrefs":["GOC:mah","GOC:mb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular anatomical entity","termid":"GO:0110165"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"pellicle","termid":"GO:0020039"}


id: PBO:0087469
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Subunit of a TORC1-stimulating GTPase and the EGO/GSE complex; subunit of Gtr1-Gtr2, a GTPase that activates TORC1 in response to amino acid stimulation; subunit of EGO/GSE, a vacuolar/endosomal membrane complex that regulates exit from rapamycin-induced growth arrest and sorting of Gap1p from the endosome to the plasma membrane; involved in phosphate transport and telomeric chromatin silencing; activated by the the Iml1p (GAP) subunit of the SEACIT complex; similar to human RagA and RagB","termid":"PBO:0087469"}


id: PATO:0001302
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A color consisting of red and orange hue with a slight amount of gray.","definition_xrefs":["PATOC:GVG"],"direct_ancestors":[{"relation_name":"is_a","term_name":"color","termid":"PATO:0000014"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"vermilion","termid":"PATO:0001302"}


id: PBO:0002997
data:
  {"annotation_feature_type":"gene","cv_name":"EC numbers","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"3.2.1.22","termid":"PBO:0002997"}


id: GO:0031151
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: S-adenosyl-L-methionine + histone H3 L-lysine (position 79) = S-adenosyl-L-homocysteine + histone H3 N6-methyl-L-lysine (position 79). This reaction is the addition of a methyl group to the lysine residue at position 79 of the histone H3 protein.","definition_xrefs":["GOC:mah","PMID:15371351"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein-lysine N-methyltransferase activity","termid":"GO:0016279"},{"relation_name":"is_a","term_name":"histone H3 methyltransferase activity","termid":"GO:0140938"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0140096"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016741"},{"rel_name":"is_a","termid":"GO:0008276"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0016741","GO:0008276","GO:0140096","GO:0003824","GO:0016740"],"is_obsolete":false,"name":"histone H3K79 methyltransferase activity","synonyms":[{"name":"histone H3K79 methylase activity","type":"exact"},{"name":"histone lysine N-methyltransferase activity (H3-K79 specific)","type":"exact"},{"name":"histone methylase activity (H3-K79 specific)","type":"exact"},{"name":"histone methyltransferase activity (H3-K79 specific)","type":"exact"},{"name":"histone-H3K79 methyltransferase activity","type":"exact"}],"termid":"GO:0031151"}


id: PBO:0053446
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 393","termid":"PBO:0053446"}


id: PBO:0089983
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DNA-binding forkhead transcription factor Sep1","termid":"PBO:0089983"}


id: SO:1001244
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","gene_count":0,"genotype_count":0,"name":"OBSOLETE SO:1001244 alternatively_spliced_transcript_encoding_greater_than_1_polypeptide_different_start_codon_different_stop_codon_coding_regions_non_overlapping (obsolete SO:1001244)","synonyms":[{"name":"alternatively_spliced_transcript_encoding_greater_than_1_polypeptide_different_start_codon_different_stop_codon_coding_regions_non-overlapping","type":"related"}],"termid":"SO:1001244"}


id: PBO:0041468
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chromosome 11 open reading frame 16","termid":"PBO:0041468"}


id: GO:0048921
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of the posterior lateral line neuromast cupula over time, from its formation to the mature structure. The cupula is secreted by mantle cells and the ciliary bundles of all of the hair cells of the neuromast are embedded in it. The cupula provides a mechanical linkage between the hair cells and the external hydrodynamic environment. The cupula of superficial neuromasts grows continuously, while the height of the cupula of canal neuromasts is limited by canal diameter.","definition_xrefs":["ISBN:0125296509"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cupula development","termid":"GO:0048887"},{"relation_name":"part_of","term_name":"posterior lateral line neuromast development","termid":"GO:0048919"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"posterior lateral line neuromast cupula development","termid":"GO:0048921"}


id: MOD:01837
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively cross-links two L-cysteine residues with a thioether bond to form L-lanthionine.","definition_xrefs":["PubMed:6007887","ChEBI:21347","RESID:AA0110#CYS2","PubMed:20805503"],"direct_ancestors":[{"relation_name":"is_a","term_name":"L-lanthionine","termid":"MOD:01839"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"L-lanthionine (Cys-Cys)","synonyms":[{"name":"(2R,2'R)-3,3'-sulfanediylbis(2-aminopropanoic acid)","type":"exact"},{"name":"(R)-S-(2-amino-2-carboxyethyl)-L-cysteine","type":"exact"},{"name":"(R,R)-2,6-diamino-4-thiaheptanedioic acid","type":"exact"},{"name":"(R,R)-3,3'-thiobis-(2-aminopropanoic acid)","type":"exact"},{"name":"(R,R)-bis(2-amino-2-carboxyethyl)sulfide","type":"exact"},{"name":"2-amino-3-(2-amino-2-carboxyethyl)sulfanylpropanoic acid","type":"exact"},{"name":"3,3'-thiobis-L-alanine","type":"exact"},{"name":"L-lanthionine","type":"exact"}],"termid":"MOD:01837"}


id: GO:0008037
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which a cell in an organism interprets its surroundings.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular process","termid":"GO:0009987"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cell recognition","synonyms":[{"name":"recognition of surroundings by cell","type":"exact"}],"termid":"GO:0008037"}


id: PBO:0075204
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nuclear ribonucleoprotein polypeptide G pseudogene 16","termid":"PBO:0075204"}


id: GO:0033241
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of the chemical reactions and pathways leading to the breakdown of amines.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of catabolic process","termid":"GO:0009894"},{"relation_name":"is_a","term_name":"regulation of amine metabolic process","termid":"GO:0033238"},{"relation_name":"regulates","term_name":"amine catabolic process","termid":"GO:0009310"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of amine catabolic process","synonyms":[{"name":"regulation of amine breakdown","type":"exact"},{"name":"regulation of amine catabolism","type":"exact"},{"name":"regulation of amine degradation","type":"exact"},{"name":"regulation of cellular amine catabolic process","type":"exact"}],"termid":"GO:0033241"}


id: PBO:0041886
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cation channel sperm associated 4","termid":"PBO:0041886"}


id: PBO:0056202
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MAGE family member A10","termid":"PBO:0056202"}


id: GO:1904039
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of export of iron ions from inside of a cell, across the plasma membrane and into the extracellular region.","definition_xrefs":["GOC:BHF","GOC:kom","PMID:15514116","GO_REF:0000058","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of iron ion transmembrane transport","termid":"GO:0034760"},{"relation_name":"is_a","term_name":"regulation of iron export across plasma membrane","termid":"GO:1904038"},{"relation_name":"negatively_regulates","term_name":"iron ion export across plasma membrane","termid":"GO:1903988"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"regulates","termid":"GO:0055085"},{"rel_name":"negatively_regulates","termid":"GO:0006810"},{"rel_name":"negatively_regulates","termid":"GO:0055085"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006810","GO:0055085","GO:0008150"],"is_obsolete":false,"name":"negative regulation of iron export across plasma membrane","synonyms":[{"name":"down regulation of ferrous iron export","type":"narrow"},{"name":"down regulation of iron(2+) export","type":"narrow"},{"name":"down-regulation of ferrous iron export","type":"narrow"},{"name":"down-regulation of iron(2+) export","type":"narrow"},{"name":"downregulation of ferrous iron export","type":"narrow"},{"name":"downregulation of iron(2+) export","type":"narrow"},{"name":"inhibition of ferrous iron export","type":"narrow"},{"name":"inhibition of iron(2+) export","type":"narrow"},{"name":"negative regulation of ferrous iron export","type":"narrow"},{"name":"negative regulation of iron(2+) export","type":"narrow"}],"termid":"GO:1904039"}


id: PBO:0003519
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"19S proteasome regulatory subunit Rpt2","termid":"PBO:0003519"}


id: GO:1990371
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. A response that results in a state of tolerance to phenol.","definition_xrefs":["GOC:mengo_curators","PMID:23356676"],"gene_count":0,"genotype_count":0,"name":"obsolete process resulting in tolerance to phenol (obsolete GO:1990371)","termid":"GO:1990371"}


id: PBO:0070103
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U7 small nuclear 17 pseudogene","termid":"PBO:0070103"}


id: PBO:0070084
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6atac small nuclear 41, pseudogene","termid":"PBO:0070084"}


id: PBO:0040201
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"argininosuccinate synthetase 1 pseudogene 14","termid":"PBO:0040201"}


id: PBO:0027453
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_triphosphatase_activity","termid":"PBO:0027453"}


id: GO:0046576
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the cleavage of rhamnogalacturonan, generating oligosaccharides of the form alpha-D-us-galacturonic acid-(1,2)-alpha-L-rhamnose-(1,4)-alpha-D-galacturonate-(1,2)-L-rhamnose-(1,2)-alpha-L-rhamnose-p-(1,4)-alpha-D-galacturonic acid, terminating at the non-reducing end with a hex-4-enopyranosyluronic acid residue.","definition_xrefs":["PMID:8720076","PMID:8587995"],"direct_ancestors":[{"relation_name":"is_a","term_name":"carbon-oxygen lyase activity, acting on polysaccharides","termid":"GO:0016837"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016829"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016829","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"rhamnogalacturonan alpha-L-rhamnopyranosyl-(1->4)-alpha-D-galactopyranosyluronide lyase activity","synonyms":[{"name":"rhamnogalacturonase B activity","type":"exact"}],"termid":"GO:0046576"}


id: GO:0032264
data:
  {"annotated_genes":["SJAG_04123","SJAG_06634"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[74811,97317],"is_not":false,"summary":null,"term":"GO:0032264"}]},"cv_name":"biological_process","definition":"Any process which produces inosine monophosphate from derivatives of it, without de novo synthesis.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"IMP biosynthetic process","termid":"GO:0006188"},{"relation_name":"is_a","term_name":"purine ribonucleotide salvage","termid":"GO:0106380"}],"gene_count":2,"genes_by_uniquename":{"SJAG_04123":null,"SJAG_06634":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0055086"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0044281","GO:0055086","GO:0008150"],"is_obsolete":false,"name":"IMP salvage","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"termid":"GO:0032264","terms_by_termid":{"GO:0032264":null}}


id: PBO:0087052
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Ribosomal 60S subunit protein L24B; not essential for translation but may be required for normal translation rate; homologous to mammalian ribosomal protein L24, no bacterial homolog; RPL24B has a paralog, RPL24A, that arose from the whole genome duplication","termid":"PBO:0087052"}


id: PBO:0026995
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_protein_level_during_meiosis_I","termid":"PBO:0026995"}


id: PBO:0070956
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L18a pseudogene 11","termid":"PBO:0070956"}


id: PBO:0066381
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RDX pseudogene 1","termid":"PBO:0066381"}


id: PBO:0029953
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_protein_secretion","termid":"PBO:0029953"}


id: GO:0051307
data:
  {"annotated_genes":["SJAG_01082","SJAG_01515","SJAG_03327","SJAG_02104","SJAG_00145","SJAG_04259","SJAG_01837","SJAG_02542","SJAG_01330","SJAG_04457"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[112795],"is_not":false,"summary":null,"term":"GO:0051307"},{"annotations":[109799,101752],"is_not":false,"rel_names":["negatively_regulates","regulates"],"summary":null,"term":"GO:1905318"},{"annotations":[105556,89516],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0051755"},{"annotations":[111922],"is_not":false,"rel_names":["negatively_regulates","regulates"],"summary":null,"term":"GO:0033316"},{"annotations":[94251],"is_not":false,"rel_names":["negatively_regulates","regulates"],"summary":null,"term":"GO:1902103"},{"annotations":[109104],"is_not":false,"rel_names":["regulates"],"summary":null,"term":"GO:1905326"},{"annotations":[90761],"is_not":false,"rel_names":["positively_regulates","regulates"],"summary":null,"term":"GO:1905191"},{"annotations":[96853],"is_not":false,"rel_names":["regulates"],"summary":null,"term":"GO:1905325"}]},"cv_name":"biological_process","definition":"The process in which chromosomes are physically detached from each other during meiosis.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"chromosome separation","termid":"GO:0051304"},{"relation_name":"is_a","term_name":"meiotic cell cycle process","termid":"GO:1903046"},{"relation_name":"part_of","term_name":"meiotic chromosome segregation","termid":"GO:0045132"}],"gene_count":10,"genes_by_uniquename":{"SJAG_00145":null,"SJAG_01082":null,"SJAG_01330":null,"SJAG_01515":null,"SJAG_01837":null,"SJAG_02104":null,"SJAG_02542":null,"SJAG_03327":null,"SJAG_04259":null,"SJAG_04457":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0140013"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0007049"}],"interesting_parent_ids":["GO:0007049","GO:0140013","GO:0008150"],"is_obsolete":false,"name":"meiotic chromosome separation","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"chromosome separation during meiosis","type":"exact"},{"name":"meiotic chromosome resolution","type":"exact"}],"termid":"GO:0051307","terms_by_termid":{"GO:0033316":null,"GO:0051307":null,"GO:0051755":null,"GO:1902103":null,"GO:1905191":null,"GO:1905318":null,"GO:1905325":null,"GO:1905326":null}}


id: PBO:0045868
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"eukaryotic translation elongation factor 1 beta 2 pseudogene 1","termid":"PBO:0045868"}


id: PATO:0001229
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A color saturation which is of high purity.","definition_xrefs":["PATOC:MAH"],"direct_ancestors":[{"relation_name":"is_a","term_name":"color saturation","termid":"PATO:0000017"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"high saturation","synonyms":[{"name":"bright ","type":"exact"},{"name":"vivid","type":"related"}],"termid":"PATO:0001229"}


id: PBO:0017696
data:
  {"annotation_feature_type":"gene","cv_name":"name_description","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Peptide Trna Hydrolase","termid":"PBO:0017696"}


id: GO:1905750
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of endosome to plasma membrane protein transport.","definition_xrefs":["PMID:22869721","GO_REF:0000058","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of intracellular protein transport","termid":"GO:0090317"},{"relation_name":"is_a","term_name":"negative regulation of protein localization to plasma membrane","termid":"GO:1903077"},{"relation_name":"is_a","term_name":"regulation of endosome to plasma membrane protein transport","termid":"GO:1905749"},{"relation_name":"is_a","term_name":"negative regulation of endocytic recycling","termid":"GO:2001136"},{"relation_name":"negatively_regulates","term_name":"endosome to plasma membrane protein transport","termid":"GO:0099638"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"negatively_regulates","termid":"GO:0016192"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0016192"},{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"negatively_regulates","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0008150","GO:0016192","GO:0006810"],"is_obsolete":false,"name":"negative regulation of endosome to plasma membrane protein transport","synonyms":[{"name":"down regulation of endosome to plasma membrane protein transport","type":"exact"},{"name":"down-regulation of endosome to plasma membrane protein transport","type":"exact"},{"name":"downregulation of endosome to plasma membrane protein transport","type":"exact"},{"name":"inhibition of endosome to plasma membrane protein transport","type":"narrow"}],"termid":"GO:1905750"}


id: PBO:0053782
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1033","termid":"PBO:0053782"}


id: PBO:0067640
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 813, pseudogene","termid":"PBO:0067640"}


id: MOD:01629
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that forms cyclo[(prolylserin)-O-yl] cysteinate by the natural process of cross-linking an L-cysteine residue an L-proline residue, and an L-serine residue, or by effectively modifying a cysteine residue.","definition_xrefs":["RESID:AA0489","PubMed:7961166"],"direct_ancestors":[{"relation_name":"is_a","term_name":"modified residue that can arise from different natural residues","termid":"MOD:00859"},{"relation_name":"is_a","term_name":"crosslinked L-cysteine residue","termid":"MOD:02044"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cyclo[(prolylserin)-O-yl] cysteinate","synonyms":[{"name":"(3,6-dioxopyrrolo[4,5-a]piperazin-2-yl)methyl cysteinate","type":"exact"},{"name":"MOD_RES Cyclo[(prolylserin)-O-yl] cysteinate","type":"exact"},{"name":"[(3S,8aS)-1,4-dioxooctahydropyrrolo[1,2-a]pyrazin-3-yl]methyl (2R)-2-amino-3-sulfanylpropanoate","type":"exact"},{"name":"cyclo[(prolylserin)-O-yl] cysteinate","type":"exact"}],"termid":"MOD:01629"}


id: GO:0008374
data:
  {"annotated_genes":["SJAG_01957","SJAG_03162","SJAG_04792","SJAG_04059","SJAG_04305","SJAG_04049","SJAG_03935","SJAG_02654","SJAG_05413","SJAG_00068","SJAG_04337","SJAG_03609","SJAG_03305","SJAG_04041","SJAG_00395"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[74829,107406],"is_not":false,"summary":null,"term":"GO:0008374"},{"annotations":[85759,71636,75869],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0003841"},{"annotations":[75870],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0047184"},{"annotations":[99466],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0106262"},{"annotations":[109494],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0003846"},{"annotations":[105894],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0016411"},{"annotations":[75994],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004144"},{"annotations":[78678,75507],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0034737"},{"annotations":[84679],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0032216"},{"annotations":[70111,70646],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004366"},{"annotations":[70110,70645],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0016287"},{"annotations":[75327,75293],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004414"},{"annotations":[86930,75292],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0009001"}]},"cv_name":"molecular_function","definition":"Catalysis of the transfer of an acyl group to an oxygen atom on the acceptor molecule.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"acyltransferase activity, transferring groups other than amino-acyl groups","termid":"GO:0016747"}],"gene_count":15,"genes_by_uniquename":{"SJAG_00068":null,"SJAG_00395":null,"SJAG_01957":null,"SJAG_02654":null,"SJAG_03162":null,"SJAG_03305":null,"SJAG_03609":null,"SJAG_03935":null,"SJAG_04041":null,"SJAG_04049":null,"SJAG_04059":null,"SJAG_04305":null,"SJAG_04337":null,"SJAG_04792":null,"SJAG_05413":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016746"},{"rel_name":"is_a","termid":"GO:0016740"}],"interesting_parent_ids":["GO:0016746","GO:0003824","GO:0016740","GO:0003674"],"is_obsolete":false,"name":"O-acyltransferase activity","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"secondary_identifiers":["Reactome:R-HSA-1482781","Reactome:R-HSA-422104","Reactome:R-HSA-162683","Reactome:R-HSA-1482867","Reactome:R-HSA-1482850","Reactome:R-HSA-3238694","Reactome:R-HSA-5358343","Reactome:R-HSA-1482775","Reactome:R-HSA-5483229","Reactome:R-HSA-422017","Reactome:R-HSA-1482861"],"termid":"GO:0008374","terms_by_termid":{"GO:0003841":null,"GO:0003846":null,"GO:0004144":null,"GO:0004366":null,"GO:0004414":null,"GO:0008374":null,"GO:0009001":null,"GO:0016287":null,"GO:0016411":null,"GO:0032216":null,"GO:0034737":null,"GO:0047184":null,"GO:0106262":null}}


id: SO:0001348
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"2prime_O_methylpseudouridine is a modified uridine base feature.","direct_ancestors":[{"relation_name":"is_a","term_name":"modified_uridine","termid":"SO:0001277"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"two_prime_O_methylpseudouridine","secondary_identifiers":["RNAMOD:056"],"synonyms":[{"name":"2'-O-methylpseudouridine","type":"exact"},{"name":"Ym","type":"exact"},{"name":"two prime O methylpseudouridine","type":"exact"}],"termid":"SO:0001348"}


id: PBO:0089091
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zf-CCHC type zinc finger protein, human ZCCHC9 ortholog, implicated in mRNA splicing","termid":"PBO:0089091"}


id: PBO:0059556
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrially encoded tRNA-Tyr (UAU/C)","termid":"PBO:0059556"}


id: PBO:0088696
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial PPR repeat protein","termid":"PBO:0088696"}


id: SO:0001863
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A trinucleotide repeat region composed of GTT repeating elements.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"trinucleotide_repeat_microsatellite_feature","termid":"SO:0000291"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"GTT_trinucleotide_repeat","synonyms":[{"name":"d(GTT)","type":"exact"}],"termid":"SO:0001863"}


id: GO:0090522
data:
  {"annotated_genes":["SJAG_02166","SJAG_04960","SJAG_02320","SJAG_03938","SJAG_03357","SJAG_04044","SJAG_03864","SJAG_01925"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[84390,86452,95080,97423,109185,109463,112945,114011],"is_not":false,"summary":null,"term":"GO:0090522"}]},"cv_name":"biological_process","definition":"The initial, indirect interaction between a secretory vesicle membrane and a site of exocytosis in the plasma membrane. This interaction is mediated by tethering factors (or complexes), which interact with both membranes. Interaction can occur via direct binding to membrane phospholipids or membrane proteins, or via binding to vesicle coat proteins. This process is distinct from and prior to docking and fusion.","definition_xrefs":["PMID:27243008","PMID:17488620","PMID:22420621","PMID:17052174","PMID:10559876","GOC:rn"],"direct_ancestors":[{"relation_name":"is_a","term_name":"vesicle tethering","termid":"GO:0099022"},{"relation_name":"is_a","term_name":"exocytic process","termid":"GO:0140029"}],"gene_count":8,"genes_by_uniquename":{"SJAG_01925":null,"SJAG_02166":null,"SJAG_02320":null,"SJAG_03357":null,"SJAG_03864":null,"SJAG_03938":null,"SJAG_04044":null,"SJAG_04960":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0016192"}],"interesting_parent_ids":["GO:0008150","GO:0016192","GO:0006810"],"is_obsolete":false,"name":"vesicle tethering involved in exocytosis","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"vesicle tethering to plasma membrane","type":"narrow"}],"termid":"GO:0090522","terms_by_termid":{"GO:0090522":null}}


id: PBO:0076514
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"taste 2 receptor member 15 pseudogene","termid":"PBO:0076514"}


id: PBO:0087012
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Ribonuclease H2 subunit; required for RNase H2 activity; role in ribonucleotide excision repair; related to human AGS3 that causes Aicardi-Goutieres syndrome","termid":"PBO:0087012"}


id: PBO:0061806
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"outer dense fiber of sperm tails 3 like 2","termid":"PBO:0061806"}


id: PBO:0032702
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_histone_H3-K9K14_acetylation","termid":"PBO:0032702"}


id: FYPO:0002818
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A physical cellular phenotype in which cells contain fewer microtubule bundles than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal microtubule cytoskeleton during vegetative growth","termid":"FYPO:0004315"},{"relation_name":"is_a","term_name":"abnormal microtubule bundle","termid":"FYPO:0005558"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"output_of","termid":"FYPO:0000054"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0002399"},{"rel_name":"output_of","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0000054","FYPO:0001320","FYPO:0000002","FYPO:0005447","FYPO:0001985","FYPO:0002399"],"is_obsolete":false,"name":"microtubule bundles present in decreased numbers","synonyms":[{"name":"decreased level of MT bundles","type":"exact"},{"name":"decreased microtubule bundling","type":"related"},{"name":"microtubule arrays present in decreased numbers","type":"related"},{"name":"microtubule bundles present in reduced numbers","type":"exact"}],"termid":"FYPO:0002818"}


id: PBO:0001040
data:
  {"annotation_feature_type":"gene","cv_name":"gene_ex","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transcriptionally regulated by Mbx1","termid":"PBO:0001040"}


id: PBO:0000565
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"carbamoyl-phosphate synthase (glutamine hydrolyzing), aspartate carbamoyltransferase Ura1","termid":"PBO:0000565"}


id: PATO:0001372
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A physical quality that inheres in propagating wave (light or sound) virtue of the bearer's change in direction when passing from one medium to another.","definition_xrefs":["WordNet:WordNet"],"direct_ancestors":[{"relation_name":"is_a","term_name":"radiation reflective quality","termid":"PATO:0001294"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"refractivity","termid":"PATO:0001372"}


id: GO:0019801
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The cyclization of asparagine to yield an L-aspartimide (otherwise known as alpha-aminosuccinimide) residue at the C-terminus of an excised intein during protein splicing.","definition_xrefs":["RESID:AA0302"],"direct_ancestors":[{"relation_name":"is_a","term_name":"asparagine metabolic process","termid":"GO:0006528"},{"relation_name":"part_of","term_name":"intein-mediated protein splicing","termid":"GO:0016539"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0006520"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0051604"}],"interesting_parent_ids":["GO:0010467","GO:0006520","GO:0044281","GO:0008150","GO:0051604"],"is_obsolete":false,"name":"cyclization of asparagine involved in intein-mediated protein splicing","synonyms":[{"name":"cyclization of asparagine, during protein splicing","type":"related"}],"termid":"GO:0019801"}


id: PBO:0084640
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Microsomal beta-keto-reductase; contains oleate response element (ORE) sequence in the promoter region; mutants exhibit reduced VLCFA synthesis, accumulate high levels of dihydrosphingosine, phytosphingosine and medium-chain ceramides","termid":"PBO:0084640"}


id: PBO:0030246
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-resistance_to_water_deprivation","termid":"PBO:0030246"}


id: PBO:0075807
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small RNA binding exonuclease protection factor La like 6, pseudogene","termid":"PBO:0075807"}


id: PBO:0055220
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2646","termid":"PBO:0055220"}


id: PBO:0068237
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 18S ribosomal N3","termid":"PBO:0068237"}


id: GO:0048753
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a pigment granule.","definition_xrefs":["GOC:rc"],"direct_ancestors":[{"relation_name":"is_a","term_name":"vesicle organization","termid":"GO:0016050"},{"relation_name":"part_of","term_name":"cellular pigmentation","termid":"GO:0033059"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"pigment granule organization","synonyms":[{"name":"pigment granule organisation","type":"exact"},{"name":"pigment granule organization and biogenesis","type":"related"}],"termid":"GO:0048753"}


id: GO:1901137
data:
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id: GO:0072269
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of the metanephric long descending thin limb over time, from its formation to the mature structure. The metanephric long descending thin limb is the descending thin limb of a long nephron in the metanephros that has a squamous epithelial morphology. The long descending limb starts in the inner stripe of the outer medulla and extends into the inner medulla.","definition_xrefs":["GOC:mtg_kidney_jan10"],"direct_ancestors":[{"relation_name":"is_a","term_name":"long descending thin limb development","termid":"GO:0072064"},{"relation_name":"is_a","term_name":"metanephric nephron epithelium development","termid":"GO:0072243"},{"relation_name":"part_of","term_name":"metanephric long nephron development","termid":"GO:0072238"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"metanephric long descending thin limb development","termid":"GO:0072269"}


id: PBO:0071330
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L27 pseudogene 7","termid":"PBO:0071330"}


id: GO:0034080
data:
  {"annotated_genes":["SJAG_00873","SJAG_02303","SJAG_00756","SJAG_03619","SJAG_02908","SJAG_04038","SJAG_03905","SJAG_02119","SJAG_02872","SJAG_00045","SJAG_04547","SJAG_01611","SJAG_04989","SJAG_00307","SJAG_03867","SJAG_05273","SJAG_03183","SJAG_04696","SJAG_00684"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[70156,71228,78412,84624,85784,88438,91076,94692,94936,97563,98394,101801,102763,108438,109526,110367,111729,112913,113987],"is_not":false,"summary":null,"term":"GO:0034080"}]},"cv_name":"biological_process","definition":"The formation of chromatin containing the histone H3 variant CENP-A to form centromeric chromatin. This specialised chromatin occurs at centromeric region in point centromeres, and the central core in modular centromeres.","definition_xrefs":["PMID:35422390","PMID:18158900","PMID:19217403","GOC:mah","GOC:vw"],"direct_ancestors":[{"relation_name":"is_a","term_name":"chromatin remodeling at centromere","termid":"GO:0031055"},{"relation_name":"part_of","term_name":"centromere complex assembly","termid":"GO:0034508"}],"gene_count":19,"genes_by_uniquename":{"SJAG_00045":null,"SJAG_00307":null,"SJAG_00684":null,"SJAG_00756":null,"SJAG_00873":null,"SJAG_01611":null,"SJAG_02119":null,"SJAG_02303":null,"SJAG_02872":null,"SJAG_02908":null,"SJAG_03183":null,"SJAG_03619":null,"SJAG_03867":null,"SJAG_03905":null,"SJAG_04038":null,"SJAG_04547":null,"SJAG_04696":null,"SJAG_04989":null,"SJAG_05273":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006325"},{"rel_name":"part_of","termid":"GO:0044085"},{"rel_name":"part_of","termid":"GO:0065003"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0065003","GO:0008150","GO:0044085","GO:0006325"],"is_obsolete":false,"name":"CENP-A containing chromatin assembly","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"secondary_identifiers":["GO:0034509","GO:0061641"],"synonyms":[{"name":"CENP-A containing chromatin organization","type":"related"},{"name":"CENP-A containing nucleosome assembly","type":"related"},{"name":"CENP-A containing nucleosome assembly at centromere","type":"exact"},{"name":"CENP-A deposition","type":"related"},{"name":"CENP-A loading","type":"related"},{"name":"CenH3-containing nucleosome assembly at centromere","type":"related"},{"name":"DNA replication-independent nucleosome assembly at centromere","type":"exact"},{"name":"centromere specific nucleosome exchange","type":"related"},{"name":"centromere-specific histone exchange","type":"exact"},{"name":"centromeric DNA replication-independent nucleosome assembly","type":"exact"},{"name":"centromeric chromatin organization","type":"related"}],"termid":"GO:0034080","terms_by_termid":{"GO:0034080":null}}


id: PBO:0064972
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PRAME family member 28, pseudogene","termid":"PBO:0064972"}


id: GO:0061424
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that activates or increases the frequency, rate or extent of transcription from an RNA polymerase II promoter and activates or increases the frequency, rate or extent of peroxisome organization.","definition_xrefs":["GOC:dph","PMID:7500953"],"gene_count":0,"genotype_count":0,"name":"obsolete positive regulation of peroxisome organization by positive regulation of transcription from RNA polymerase II promoter (obsolete GO:0061424)","synonyms":[{"name":"positive regulation of peroxisome organisation by positive regulation of transcription from RNA polymerase II promoter","type":"exact"}],"termid":"GO:0061424"}


id: GO:1902073
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of hypoxia-inducible factor-1alpha signaling pathway.","definition_xrefs":["PMID:21685248","GOC:bf","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of signal transduction","termid":"GO:0009967"},{"relation_name":"is_a","term_name":"regulation of hypoxia-inducible factor-1alpha signaling pathway","termid":"GO:1902071"},{"relation_name":"positively_regulates","term_name":"hypoxia-inducible factor-1alpha signaling pathway","termid":"GO:0097411"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"positively_regulates","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"positive regulation of hypoxia-inducible factor-1alpha signaling pathway","synonyms":[{"name":"activation of HIF1alpha pathway","type":"exact"},{"name":"activation of hypoxia-inducible factor-1alpha signaling pathway","type":"narrow"},{"name":"activation of hypoxia-inducible factor-1alpha signalling pathway","type":"exact"},{"name":"hypoxic stabilization of HIF1A","type":"narrow"},{"name":"positive regulation of HIF1alpha pathway","type":"exact"},{"name":"positive regulation of hypoxia-inducible factor-1alpha signalling pathway","type":"exact"},{"name":"up regulation of HIF1alpha pathway","type":"exact"},{"name":"up regulation of hypoxia-inducible factor-1alpha signaling pathway","type":"exact"},{"name":"up regulation of hypoxia-inducible factor-1alpha signalling pathway","type":"exact"},{"name":"up-regulation of HIF1alpha pathway","type":"exact"},{"name":"up-regulation of hypoxia-inducible factor-1alpha signaling pathway","type":"exact"},{"name":"up-regulation of hypoxia-inducible factor-1alpha signalling pathway","type":"exact"},{"name":"upregulation of HIF1alpha pathway","type":"exact"},{"name":"upregulation of hypoxia-inducible factor-1alpha signaling pathway","type":"exact"},{"name":"upregulation of hypoxia-inducible factor-1alpha signalling pathway","type":"exact"}],"termid":"GO:1902073"}


id: PBO:0069340
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 600, pseudogene","termid":"PBO:0069340"}


id: GO:0006604
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving phosphoarginine, a phosphagen of L-arginine with phosphoric acid containing the phosphoamide bond. It is a source of energy in the contraction of muscle in invertebrates, corresponding to phosphocreatine in the muscles of vertebrates.","definition_xrefs":["GOC:curators","PMID:16371597"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phosphagen metabolic process","termid":"GO:0006599"},{"relation_name":"is_a","term_name":"L-amino acid metabolic process","termid":"GO:0170033"},{"relation_name":"is_a","term_name":"non-proteinogenic amino acid metabolic process","termid":"GO:0170041"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006520"}],"interesting_parent_ids":["GO:0006520","GO:0044281","GO:0008150"],"is_obsolete":false,"name":"phosphoarginine metabolic process","synonyms":[{"name":"phosphoarginine metabolism","type":"exact"}],"termid":"GO:0006604"}


id: PBO:0055009
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2424","termid":"PBO:0055009"}


id: GO:0004216
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the hydrolysis of peptide bonds. Has a broad proteolytic activity. With small-molecule substrates and inhibitors, the major determinant of specificity is P2, which is preferably Leu, Met > Phe, and not Arg.","definition_xrefs":["EC:3.4.22.38"],"gene_count":0,"genotype_count":0,"name":"obsolete cathepsin K activity (obsolete GO:0004216)","synonyms":[{"name":"cathepsin K activity","type":"exact"},{"name":"cathepsin O activity","type":"related"},{"name":"cathepsin O2 activity","type":"related"},{"name":"cathepsin X activity","type":"related"}],"termid":"GO:0004216"}


id: GO:1900223
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of amyloid-beta clearance.","definition_xrefs":["GOC:TermGenie","GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of multicellular organismal process","termid":"GO:0051240"},{"relation_name":"is_a","term_name":"regulation of amyloid-beta clearance","termid":"GO:1900221"},{"relation_name":"positively_regulates","term_name":"amyloid-beta clearance","termid":"GO:0097242"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of amyloid-beta clearance","synonyms":[{"name":"activation of beta-amyloid clearance","type":"narrow"},{"name":"positive regulation of beta-amyloid clearance","type":"exact"},{"name":"up regulation of beta-amyloid clearance","type":"exact"},{"name":"up-regulation of beta-amyloid clearance","type":"exact"},{"name":"upregulation of beta-amyloid clearance","type":"exact"}],"termid":"GO:1900223"}


id: PBO:0087140
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA-binding protein that directly activates mRNA decapping; binds mRNA substrate and enhances activity of decapping proteins Dcp1p and Dcp2p; has a role in translation during heat stress; protein increases in abundance and relocalizes to nucleolus and to nuclear foci upon DNA replication stress; EDC2 has a paralog, EDC1, that arose from the whole genome duplication","termid":"PBO:0087140"}


id: GO:0071537
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. A process of protein complex assembly in which the arrangement and bonding together of the set of components that form the protein complex is mediated by a C3HC4-type RING finger domain interaction.","definition_xrefs":["GOC:amm","InterPro:IPR018957"],"gene_count":0,"genotype_count":0,"name":"obsolete C3HC4-type RING finger domain-mediated complex assembly (obsolete GO:0071537)","synonyms":[{"name":"zinc finger C3HC4 type domain-mediated complex assembly","type":"exact"}],"termid":"GO:0071537"}


id: GO:0080123
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: a jasmonate + an L-alpha-amino acid + ATP = a jasmonyl-L-amino acid + AMP + diphosphate + H+. In Arabidopsis, isoleucine is the principal amino acid that conjugates with JA to form JA (JA-Ile). Other amino acid can be conjugated with JA such as valine, leucine, and phenylalanine.","definition_xrefs":["RHEA:55772","PMID:33821356","PMID:15258265","PMID:17291501"],"direct_ancestors":[{"relation_name":"is_a","term_name":"acid-amino acid ligase activity","termid":"GO:0016881"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016874"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016874"],"is_obsolete":false,"name":"jasmonoyl-L-amino acid ligase activity","secondary_identifiers":["EC:6.3.2.52"],"synonyms":[{"name":"ja-amino synthetase activity","type":"exact"},{"name":"jasmonate-amido synthetase activity","type":"exact"},{"name":"jasmonate-amino acid conjugate synthetase activity","type":"exact"},{"name":"jasmonate-amino acid synthetase activity","type":"exact"},{"name":"jasmonate-amino synthetase activity","type":"exact"},{"name":"jasmonate:amino acid synthetase activity","type":"exact"},{"name":"jasmonic acid-amino synthetase activity","type":"exact"},{"name":"jasmonyl-amino synthetase activity","type":"exact"}],"termid":"GO:0080123"}


id: GO:0047282
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: dTDP-L-dihydrostreptose + streptidine 6-phosphate = O-(1->4)-alpha-L-dihydrostreptosyl-streptidine 6-phosphate + dTDP + H+.","definition_xrefs":["RHEA:24392","EC:2.4.2.27"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pentosyltransferase activity","termid":"GO:0016763"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016757"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016740","GO:0016757"],"is_obsolete":false,"name":"dTDP-dihydrostreptose-streptidine-6-phosphate dihydrostreptosyltransferase activity","secondary_identifiers":["KEGG_REACTION:R04222","MetaCyc:2.4.2.27-RXN"],"synonyms":[{"name":"dTDP-L-dihydrostreptose:streptidine-6-phosphate dihydrostreptosyltransferase activity","type":"related"},{"name":"dTDPdihydrostreptose-streptidine-6-phosphate dihydrostreptosyltransferase activity","type":"related"},{"name":"thymidine diphosphodihydrostreptose-streptidine 6-phosphate dihydrostreptosyltransferase activity","type":"related"}],"termid":"GO:0047282"}


id: PBO:0074940
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nucleolar RNA, C/D box 105","termid":"PBO:0074940"}


id: GO:0008932
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the specific cleavage of the beta-(1->4) glycosidic linkage between N-acetylmuramyl and N-acetylglucosaminyl residues in peptidoglycan, with the concomitant formation of 1,6-anhydro-N-acetylmuramyl residues. Acts on linkages within peptidoglycan chains (i.e. not at the ends) to produce shorter strands with 1,6-anhydromuramic acid ends.","definition_xrefs":["PMID:10964424","PMID:9642199"],"direct_ancestors":[{"relation_name":"is_a","term_name":"lytic transglycosylase activity","termid":"GO:0008933"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016829"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016829","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"lytic endotransglycosylase activity","secondary_identifiers":["EC:4.2.2.n2"],"synonyms":[{"name":"murein lytic endotransglycosylase E activity","type":"narrow"}],"termid":"GO:0008932"}


id: GO:0086022
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The attachment of SA node cardiomyocyte to an atrial cardiomyocyte via adhesion molecules that results in the cells being juxtaposed so that they can communicate.","definition_xrefs":["GOC:BHF","GOC:mtg_cardiac_conduct_nov11"],"direct_ancestors":[{"relation_name":"is_a","term_name":"heterotypic cell-cell adhesion","termid":"GO:0034113"},{"relation_name":"is_a","term_name":"cardiac muscle cell-cardiac muscle cell adhesion","termid":"GO:0086042"},{"relation_name":"part_of","term_name":"SA node cell to atrial cardiac muscle cell communication","termid":"GO:0086070"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0007155"}],"interesting_parent_ids":["GO:0008150","GO:0007155"],"is_obsolete":false,"name":"SA node cell-atrial cardiac muscle cell adhesion involved in cell communication","synonyms":[{"name":"SA cardiac muscle cell-atrial cardiac muscle cell adhesion involved in cell communication","type":"exact"},{"name":"SA cardiomyocyte-atrial cardiomyocyte adhesion involved in cell communication","type":"exact"},{"name":"SAN cardiomyocyte-atrial cardiomyocyte adhesion involved in cell communication","type":"exact"},{"name":"sinoatrial node cardiomyocyte-atrial cardiomyocyte adhesion involved in cell communication","type":"exact"},{"name":"sinus node cardiomyocyte-atrial cardiomyocyte adhesion involved in cell communication","type":"narrow"}],"termid":"GO:0086022"}


id: PBO:0086786
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Putative protein of unknown function; the authentic, non-tagged protein is detected in highly purified mitochondria in high-throughput studies; analysis of HA-tagged protein suggests a membrane localization","termid":"PBO:0086786"}


id: PBO:0050653
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"heat shock protein 90 alpha family class B member 3, pseudogene","termid":"PBO:0050653"}


id: PBO:0034270
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-function_of","termid":"PBO:0034270"}


id: GO:0002487
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which an antigen-presenting cell expresses a peptide antigen of endogenous origin on its cell surface in association with an MHC class I protein complex. The peptide is typically a fragment of a larger endogenous protein which has been degraded within the cell and becomes associated with the MHC class I molecule in an endolysosome. Class I here refers to classical class I molecules.","definition_xrefs":["GOC:add","PMID:10631943"],"direct_ancestors":[{"relation_name":"is_a","term_name":"antigen processing and presentation of endogenous peptide antigen via MHC class I","termid":"GO:0019885"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"antigen processing and presentation of endogenous peptide antigen via MHC class I via endolysosomal pathway","synonyms":[{"name":"endogenous peptide antigen processing and presentation via MHC class I via endolysosomal pathway","type":"exact"}],"termid":"GO:0002487"}


id: GO:0009781
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Processes by which a molecule of water is oxidized during photosynthesis. P680+, the photochemically oxidized reaction-center chlorophyll of PSII, is a strong biological oxidant. The reduction potential of P680+ is more positive than that of water, and thus it can oxidize water to give O2 and H+ ions. The oxygen escapes as a gas while the H+ ions remain in solution inside the thylakoid vesicle.","definition_xrefs":["GOC:jid","ISBN:0716743663","ISBN:0816017360"],"gene_count":0,"genotype_count":0,"name":"obsolete photosynthetic water oxidation (obsolete GO:0009781)","synonyms":[{"name":"photosynthetic water oxidation","type":"exact"}],"termid":"GO:0009781"}


id: FYPO:0005627
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell cycle checkpoint phenotype in which the duration of cell cycle arrest or delay due to regulation by any mitotic DNA damage checkpoint is greater than in wild type during a cellular response to ultraviolet (UV) light, when cells are exposed to UV during S phase of the mitotic cell cycle.","definition_xrefs":["PomBase:mah","PMID:26652183"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased duration of mitotic DNA damage checkpoint during cellular response to UV","termid":"FYPO:0003445"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000298"},{"rel_name":"is_a","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0000002","FYPO:0000298","FYPO:0000631","FYPO:0001320","FYPO:0001985"],"is_obsolete":false,"name":"increased duration of mitotic DNA damage checkpoint during cellular response to UV during mitotic S phase","synonyms":[{"name":"delayed DNA damage checkpoint deactivation during cellular response to UV during mitotic S phase","type":"exact"},{"name":"increased duration of mitotic DNA damage checkpoint after UV irradiation during S phase","type":"exact"},{"name":"increased duration of mitotic DNA damage checkpoint during cellular response to S phase exposure to UV","type":"exact"},{"name":"prolonged DNA damage checkpoint during cellular response to UV during mitotic S phase","type":"exact"}],"termid":"FYPO:0005627"}


id: PATO:0000187
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A relational quality of occurrent inhering in a bearer by virtue of the bearer's ability to consume a resource.","definition_xrefs":["PATOC:GVG"],"gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0000187 consumption quality (obsolete PATO:0000187)","synonyms":[{"name":"propensity to consume","type":"related"}],"termid":"PATO:0000187"}


id: PBO:0051840
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"insulin receptor substrate 2","termid":"PBO:0051840"}


id: GO:0008439
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Increases the activity of the enzyme monophenol monooxygenase.","definition_xrefs":["GOC:ai"],"gene_count":0,"genotype_count":0,"name":"obsolete monophenol monooxygenase activator activity (obsolete GO:0008439)","synonyms":[{"name":"monophenol monooxygenase activator activity","type":"exact"},{"name":"prophenol oxidase activator","type":"related"}],"termid":"GO:0008439"}


id: PBO:0027524
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abolished_mitotic_spindle_elongation","termid":"PBO:0027524"}


id: GO:0090296
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the rate, frequency or extent of the process in which new strands of DNA are synthesized in the mitochondrion.","definition_xrefs":["GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of DNA-templated DNA replication","termid":"GO:0090329"},{"relation_name":"is_a","term_name":"regulation of mitochondrial DNA metabolic process","termid":"GO:1901858"},{"relation_name":"regulates","term_name":"mitochondrial DNA replication","termid":"GO:0006264"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0006259"},{"rel_name":"regulates","termid":"GO:0006260"}],"interesting_parent_ids":["GO:0006260","GO:0008150","GO:0006259"],"is_obsolete":false,"name":"regulation of mitochondrial DNA replication","synonyms":[{"name":"regulation of mitochondrial DNA synthesis","type":"related"}],"termid":"GO:0090296"}


id: PBO:0045211
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DnaJ heat shock protein family (Hsp40) member C5 beta","termid":"PBO:0045211"}


id: GO:0080044
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the transfer of a glucosyl group from UDP-glucose to the 7-hydroxy group of a quercetin molecule.","definition_xrefs":["PMID:15352060"],"direct_ancestors":[{"relation_name":"is_a","term_name":"UDP-glucosyltransferase activity","termid":"GO:0035251"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016757"}],"interesting_parent_ids":["GO:0016757","GO:0016740","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"quercetin 7-O-glucosyltransferase activity","termid":"GO:0080044"}


id: PBO:0002106
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"karyopherin Kap95","termid":"PBO:0002106"}


id: GO:1990514
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"An RNA interference where the silencing signal spreads 5' along the target mRNA, outside of the initial target sequence. Typically involves the formation of secondary siRNAs formed when the initial mRNA target sequence functions as a template for 5' to 3' synthesis of new dsRNA.","definition_xrefs":["PMID:24369430","GOC:pf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"transitive RNA interference","termid":"GO:0036453"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0010467"},{"rel_name":"negatively_regulates","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0008150","GO:0010467"],"is_obsolete":false,"name":"5' transitive RNA interference","termid":"GO:1990514"}


id: PBO:0058754
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 6878","termid":"PBO:0058754"}


id: GO:0002426
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The synthesis and release of immunoglobulin in the mucosal tissue.","definition_xrefs":["GOC:jal"],"direct_ancestors":[{"relation_name":"is_a","term_name":"immunoglobulin production involved in immunoglobulin-mediated immune response","termid":"GO:0002381"},{"relation_name":"part_of","term_name":"mucosal immune response","termid":"GO:0002385"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0008150","GO:0010467"],"is_obsolete":false,"name":"immunoglobulin production in mucosal tissue","synonyms":[{"name":"antibody production in mucosal tissue","type":"exact"}],"termid":"GO:0002426"}


id: GO:0019328
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of gallate, the anion of gallic acid, in the absence of oxygen.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"gallate catabolic process","termid":"GO:0019396"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0044248"}],"interesting_parent_ids":["GO:0044281","GO:0008150","GO:0044248"],"is_obsolete":false,"name":"anaerobic gallate catabolic process","secondary_identifiers":["MetaCyc:P3-PWY"],"synonyms":[{"name":"anaerobic gallate breakdown","type":"exact"},{"name":"anaerobic gallate catabolism","type":"exact"},{"name":"anaerobic gallate degradation","type":"exact"},{"name":"anaerobic gallic acid catabolic process","type":"exact"},{"name":"anaerobic gallic acid catabolism","type":"exact"},{"name":"gallate fermentation","type":"exact"}],"termid":"GO:0019328"}


id: PBO:0069233
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 488, pseudogene","termid":"PBO:0069233"}


id: GO:0120227
data:
  {"annotated_genes":["SJAG_01458"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[75140],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0036042"}]},"cv_name":"molecular_function","definition":"Binding to an acyl-CoA, a thioester that results from the formal condensation of the thiol group of coenzyme A with the carboxy group of any carboxylic acid.","definition_xrefs":["GOC:krc"],"direct_ancestors":[{"relation_name":"is_a","term_name":"adenyl ribonucleotide binding","termid":"GO:0032559"},{"relation_name":"is_a","term_name":"amide binding","termid":"GO:0033218"},{"relation_name":"is_a","term_name":"anion binding","termid":"GO:0043168"},{"relation_name":"is_a","term_name":"sulfur compound binding","termid":"GO:1901681"}],"gene_count":1,"genes_by_uniquename":{"SJAG_01458":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0005488","GO:0003674"],"is_obsolete":false,"name":"acyl-CoA binding","references_by_uniquename":{"GO_REF:0000033":null},"synonyms":[{"name":"acyl binding","type":"broad"},{"name":"acyl-coenzyme A binding","type":"exact"}],"termid":"GO:0120227","terms_by_termid":{"GO:0036042":null}}


id: PBO:0061750
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"negative expression of androgen receptor regulating lncRNA","termid":"PBO:0061750"}


id: PBO:0078775
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-Asn (anticodon GTT) 2-7","termid":"PBO:0078775"}


id: PBHQ:003
data:
  {"annotation_feature_type":"gene","cv_name":"pombase_has_qualifier_range","direct_ancestors":[{"relation_name":"is_a","term_name":"has_qualifier_range","termid":"PBHQ:001"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"colocalizes_with","termid":"PBHQ:003"}


id: GO:0070795
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of conidiophore development, a process that leads to the formation of a conidiophore. The conidiophore is a specialized hypha that extends aerially from the growth substrate and bears conidia, or asexual spores.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of conidiophore development","termid":"GO:0070793"},{"relation_name":"is_a","term_name":"positive regulation of spore-bearing organ development","termid":"GO:0075261"},{"relation_name":"positively_regulates","term_name":"conidiophore development","termid":"GO:0070787"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of conidiophore development","termid":"GO:0070795"}


id: PBO:0005785
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"complexed with Cdc5 protein Cwf26","termid":"PBO:0005785"}


id: PBO:0044222
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CTXN2 antisense RNA 1","termid":"PBO:0044222"}


id: PBO:0053434
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 379","termid":"PBO:0053434"}


id: GO:0048776
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of leucophore differentiation.","definition_xrefs":["GOC:mh"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of leucophore differentiation","termid":"GO:0048775"},{"relation_name":"is_a","term_name":"negative regulation of pigment cell differentiation","termid":"GO:0050941"},{"relation_name":"negatively_regulates","term_name":"leucophore differentiation","termid":"GO:0048772"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of leucophore differentiation","synonyms":[{"name":"down regulation of leucophore differentiation","type":"exact"},{"name":"down-regulation of leucophore differentiation","type":"exact"},{"name":"downregulation of leucophore differentiation","type":"exact"},{"name":"inhibition of leucophore differentiation","type":"narrow"}],"termid":"GO:0048776"}


id: PBO:0027049
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-sensitive_to_ionizing_radiation_during_mitotic_G1_phase","termid":"PBO:0027049"}


id: GO:1904323
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of inhibitory G protein-coupled receptor phosphorylation.","definition_xrefs":["GO_REF:0000058","PMID:15937517","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of protein phosphorylation","termid":"GO:0001932"},{"relation_name":"regulates","term_name":"inhibitory G protein-coupled receptor phosphorylation","termid":"GO:0002030"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of inhibitory G protein-coupled receptor phosphorylation","synonyms":[{"name":"regulation of inhibitory G-protein coupled receptor phosphorylation","type":"exact"}],"termid":"GO:1904323"}


id: PBO:0033810
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_DNA_recombination_at_telomere_during_nitrogen_starvation","termid":"PBO:0033810"}


id: PBO:0071279
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L26 pseudogene 2","termid":"PBO:0071279"}


id: PBO:0043570
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"collagen type VII alpha 1 chain","termid":"PBO:0043570"}


id: PBO:0055832
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"leucine rich repeat and fibronectin type III domain containing 2","termid":"PBO:0055832"}


id: PBO:0033752
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_sister_chromatid_meiotic_recombination","termid":"PBO:0033752"}


id: PBO:0039876
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Rho GTPase activating protein 32","termid":"PBO:0039876"}


id: PBO:0065634
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PTPN11 pseudogene 3","termid":"PBO:0065634"}


id: PBO:0030287
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-altered_cellular_sulfide_level","termid":"PBO:0030287"}


id: PBO:0066270
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA binding motif protein Y-linked family 1 member D","termid":"PBO:0066270"}


id: GO:0016999
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving an antibiotic, a substance produced by or derived from certain fungi, bacteria, and other organisms, that can destroy or inhibit the growth of other microorganisms.","definition_xrefs":["GOC:cab2"],"direct_ancestors":[{"relation_name":"is_a","term_name":"metabolic process","termid":"GO:0008152"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"antibiotic metabolic process","synonyms":[{"name":"antibiotic metabolism","type":"exact"}],"termid":"GO:0016999"}


id: PBO:0038561
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ABI family member 3","termid":"PBO:0038561"}


id: PBO:0002403
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nucleotide-sugar phosphatase (predicted)","termid":"PBO:0002403"}


id: FYPO:0003786
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to chromatin at the central core of the centromeric regions is abolished.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abolished protein localization to centromeric chromatin during vegetative growth","termid":"FYPO:0003744"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0001320","FYPO:0001985","FYPO:0000002","FYPO:0000138"],"is_obsolete":false,"name":"abolished protein localization to centromere central core during vegetative growth","secondary_identifiers":["FYPO:0003765"],"synonyms":[{"name":"abolished protein localisation to chromatin at centromere central core during vegetative growth","type":"exact"},{"name":"abolished protein localization to centromere central core during mitotic cell cycle","type":"related"},{"name":"abolished protein localization to chromatin at centromere central core during mitotic cell cycle","type":"related"},{"name":"abolished protein localization to chromatin at centromere central core during vegetative growth","type":"exact"},{"name":"protein localization to centromere central core abolished during vegetative growth","type":"exact"},{"name":"protein localization to chromatin at centromere central core abolished during vegetative growth","type":"exact"}],"termid":"FYPO:0003786"}


id: PBO:0079648
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ubiquitin conjugating enzyme E2 S pseudogene 1","termid":"PBO:0079648"}


id: FYPO:0003116
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A phenotype observed in the vegetative growth phase of the life cycle in which cells show increased sensitivity to plumbagin. Cells stop growing (and may die) at a concentration of plumbagin that allows wild type cells to grow.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased sensitivity to chemical during vegetative growth","termid":"FYPO:0000127"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000003"},{"rel_name":"is_a","termid":"FYPO:0002683"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000139"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000003","FYPO:0002683","FYPO:0005447","FYPO:0000139"],"is_obsolete":false,"name":"sensitive to plumbagin","synonyms":[{"name":"hypersensitive to plumbagin","type":"exact"},{"name":"sensitive to plumbagin during mitotic cell cycle","type":"related"},{"name":"sensitive to plumbagin during vegetative growth","type":"exact"}],"termid":"FYPO:0003116"}


id: PBO:0049333
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"general transcription factor IIH subunit 1","termid":"PBO:0049333"}


id: GO:1905068
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that activates or increases the frequency, rate or extent of canonical Wnt signaling pathway involved in heart development.","definition_xrefs":["GOC:BHF_miRNA","GOC:TermGenie","PMID:25034767","GO_REF:0000058","GOC:bc","GOC:BHF"],"gene_count":0,"genotype_count":0,"name":"obsolete positive regulation of canonical Wnt signaling pathway involved in heart development (obsolete GO:1905068)","synonyms":[{"name":"activation of canonical Wnt receptor signaling pathway involved in heart development","type":"narrow"},{"name":"activation of canonical Wnt receptor signalling pathway involved in heart development","type":"narrow"},{"name":"activation of canonical Wnt signaling pathway involved in heart development","type":"narrow"},{"name":"activation of canonical Wnt-activated signaling pathway involved in heart development","type":"narrow"},{"name":"positive regulation of canonical Wnt receptor signaling pathway involved in heart development","type":"exact"},{"name":"positive regulation of canonical Wnt receptor signalling pathway involved in heart development","type":"exact"},{"name":"positive regulation of canonical Wnt-activated signaling pathway involved in heart development","type":"exact"},{"name":"up regulation of canonical Wnt receptor signaling pathway involved in heart development","type":"exact"},{"name":"up regulation of canonical Wnt receptor signalling pathway involved in heart development","type":"exact"},{"name":"up regulation of canonical Wnt signaling pathway involved in heart development","type":"exact"},{"name":"up regulation of canonical Wnt-activated signaling pathway involved in heart development","type":"exact"},{"name":"up-regulation of canonical Wnt receptor signaling pathway involved in heart development","type":"exact"},{"name":"up-regulation of canonical Wnt receptor signalling pathway involved in heart development","type":"exact"},{"name":"up-regulation of canonical Wnt signaling pathway involved in heart development","type":"exact"},{"name":"up-regulation of canonical Wnt-activated signaling pathway involved in heart development","type":"exact"},{"name":"upregulation of canonical Wnt receptor signaling pathway involved in heart development","type":"exact"},{"name":"upregulation of canonical Wnt receptor signalling pathway involved in heart development","type":"exact"},{"name":"upregulation of canonical Wnt signaling pathway involved in heart development","type":"exact"},{"name":"upregulation of canonical Wnt-activated signaling pathway involved in heart development","type":"exact"}],"termid":"GO:1905068"}


id: FYPO:0004302
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which the observed rate of a phosphatase activity is abnormal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal catalytic activity","termid":"FYPO:0000661"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0000707"},{"rel_name":"is_a","termid":"FYPO:0000654"},{"rel_name":"is_a","termid":"FYPO:0000661"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0000661","FYPO:0000652","FYPO:0001985","FYPO:0000707","FYPO:0000654"],"is_obsolete":false,"name":"abnormal phosphatase activity","termid":"FYPO:0004302"}


id: PBO:0041513
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chromosome 15 putative open reading frame 32","termid":"PBO:0041513"}


id: MOD:01661
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-tyrosine residue to pyruvic acid.","definition_xrefs":["PubMed:10085076","PubMed:3042771","PubMed:8464063","PubMed:500639","RESID:AA0127#TYR"],"direct_ancestors":[{"relation_name":"is_a","term_name":"modified L-tyrosine residue","termid":"MOD:00919"},{"relation_name":"is_a","term_name":"pyruvic acid","termid":"MOD:01154"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pyruvic acid (Tyr)","synonyms":[{"name":"2-oxopropanoic acid","type":"exact"},{"name":"MOD_RES Pyruvic acid (Tyr)","type":"exact"},{"name":"pyruvic acid","type":"exact"}],"termid":"MOD:01661"}


id: FYPO:0004975
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which depolymerization (i.e. removal of tubulin dimers) of microtubules extending behind a moving spindle pole body occurs at a lower rate, or speed, than normal.","definition_xrefs":["PomBase:mah","PMID:16611238","GO:0036078"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased rate of microtubule depolymerization during vegetative growth","termid":"FYPO:0000903"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000054"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000054","FYPO:0005447","FYPO:0000002","FYPO:0001320"],"is_obsolete":false,"name":"decreased rate of microtubule depolymerization behind moving spindle pole body","synonyms":[{"name":"decreased microtubule shrinkage behind moving spindle pole body","type":"related"},{"name":"decreased rate of backward-extending microtubule depolymerization","type":"exact"},{"name":"decreased rate of microtubule catastrophe behind moving spindle pole body","type":"related"},{"name":"decreased rate of microtubule depolymerisation behind moving spindle pole body","type":"exact"},{"name":"decreased rate of microtubule depolymerization behind moving SPB","type":"exact"},{"name":"decreased rate of microtubule depolymerization behind moving spindle pole body during mitotic cell cycle","type":"related"},{"name":"decreased rate of microtubule depolymerization behind moving spindle pole body during vegetative growth","type":"exact"},{"name":"increased microtubule stability behind moving spindle pole body","type":"related"},{"name":"increased stability of backwards-extending microtubules","type":"related"},{"name":"reduced rate of microtubule depolymerization behind moving spindle pole body","type":"exact"}],"termid":"FYPO:0004975"}


id: PBO:0046169
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"extracellular leucine rich repeat and fibronectin type III domain containing 1","termid":"PBO:0046169"}


id: PBO:0013761
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"GTP cyclohydrolase II Urg1 (predicted)","termid":"PBO:0013761"}


id: PBO:0087263
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Serine/threonine protein phosphatase Z, isoform of Ppz2p; involved in regulation of potassium transport, which affects osmotic stability, cell cycle progression, and halotolerance","termid":"PBO:0087263"}


id: PBO:0059560
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"metallothionein 1D, pseudogene","termid":"PBO:0059560"}


id: PBO:0076519
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"taste 2 receptor member 22 pseudogene","termid":"PBO:0076519"}


id: PBO:0015672
data:
  {"annotation_feature_type":"gene","cv_name":"complementation","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"not functionally complemented by S. cerevisiae TIF34","termid":"PBO:0015672"}


id: PBO:0084830
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Mitochondrial protein required for transamination of isoleucine; but not of valine or leucine; may regulate specificity of branched-chain transaminases Bat1p and Bat2p; induction of expression in response to stress is mediated by a Hog1p-regulated antisense RNA and gene looping; interacts genetically with mitochondrial ribosomal protein genes; MMF1 has a paralog, HMF1, that arose from the whole genome duplication","termid":"PBO:0084830"}


id: PBO:0089801
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial ribosomal protein subunit S11","termid":"PBO:0089801"}


id: PBO:0064895
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protein phosphatase 2 regulatory subunit B'alpha","termid":"PBO:0064895"}


id: GO:0006643
data:
  {"annotated_genes":["SJAG_03066","SJAG_00295","SJAG_03076","SJAG_01570","SJAG_00176","SJAG_04924","SJAG_03015","SJAG_01227","SJAG_06425","SJAG_02085","SJAG_04550","SJAG_02903","SJAG_02913","SJAG_02056","SJAG_02168","SJAG_00831","SJAG_06383","SJAG_03115","SJAG_04337","SJAG_03292","SJAG_02776","SJAG_05327","SJAG_04178","SJAG_01057","SJAG_00068","SJAG_00846","SJAG_00261","SJAG_05219","SJAG_04881","SJAG_00404","SJAG_03878","SJAG_04107","SJAG_02706","SJAG_04986","SJAG_03672","SJAG_01356","SJAG_04165","SJAG_02523","SJAG_05278","SJAG_02842","SJAG_03801","SJAG_02488","SJAG_02305","SJAG_02590","SJAG_02804","SJAG_03506","SJAG_00880","SJAG_01219","SJAG_01857","SJAG_04975","SJAG_02885","SJAG_01416","SJAG_01860","SJAG_04878","SJAG_03690","SJAG_04578","SJAG_00506","SJAG_02429","SJAG_00519","SJAG_04119","SJAG_03953","SJAG_04913","SJAG_01300","SJAG_05311"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[105825],"is_not":false,"summary":null,"term":"GO:0006643"},{"annotations":[72611],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006666"},{"annotations":[73968,73997,87070,109260,70871],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0016255"},{"annotations":[77800,77657,73597,76999,104218,75896],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0046513"},{"annotations":[76431,106944,85282,111404,75500,76443,74260,74831,76989,69997,71664,102154,72785,72930,88629,84678,99256,110079,112460,76445,97123,76747,75561,74816,76650,71312],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006506"},{"annotations":[72435],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006505"},{"annotations":[73298,75279],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006673"},{"annotations":[74655,77962,90854],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0051999"},{"annotations":[87469,107867],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006675"},{"annotations":[106260,96259],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0046467"},{"annotations":[85555,104219],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0046521"},{"annotations":[90746,97657,73324,96933,87470,73297,86308,95767,112738,72285,87610,76698,89188,72610,105009],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0030148"},{"annotations":[71838],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006665"},{"annotations":[105100,75895,77656,98415,73307,92487,101425],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0046512"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways involving membrane lipids, any lipid found in or associated with a biological membrane.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular lipid metabolic process","termid":"GO:0044255"}],"gene_count":64,"genes_by_uniquename":{"SJAG_00068":null,"SJAG_00176":null,"SJAG_00261":null,"SJAG_00295":null,"SJAG_00404":null,"SJAG_00506":null,"SJAG_00519":null,"SJAG_00831":null,"SJAG_00846":null,"SJAG_00880":null,"SJAG_01057":null,"SJAG_01219":null,"SJAG_01227":null,"SJAG_01300":null,"SJAG_01356":null,"SJAG_01416":null,"SJAG_01570":null,"SJAG_01857":null,"SJAG_01860":null,"SJAG_02056":null,"SJAG_02085":null,"SJAG_02168":null,"SJAG_02305":null,"SJAG_02429":null,"SJAG_02488":null,"SJAG_02523":null,"SJAG_02590":null,"SJAG_02706":null,"SJAG_02776":null,"SJAG_02804":null,"SJAG_02842":null,"SJAG_02885":null,"SJAG_02903":null,"SJAG_02913":null,"SJAG_03015":null,"SJAG_03066":null,"SJAG_03076":null,"SJAG_03115":null,"SJAG_03292":null,"SJAG_03506":null,"SJAG_03672":null,"SJAG_03690":null,"SJAG_03801":null,"SJAG_03878":null,"SJAG_03953":null,"SJAG_04107":null,"SJAG_04119":null,"SJAG_04165":null,"SJAG_04178":null,"SJAG_04337":null,"SJAG_04550":null,"SJAG_04578":null,"SJAG_04878":null,"SJAG_04881":null,"SJAG_04913":null,"SJAG_04924":null,"SJAG_04975":null,"SJAG_04986":null,"SJAG_05219":null,"SJAG_05278":null,"SJAG_05311":null,"SJAG_05327":null,"SJAG_06383":null,"SJAG_06425":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006629"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006629","GO:0008150"],"is_obsolete":false,"name":"membrane lipid metabolic process","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"synonyms":[{"name":"membrane lipid metabolism","type":"exact"}],"termid":"GO:0006643","terms_by_termid":{"GO:0006505":null,"GO:0006506":null,"GO:0006643":null,"GO:0006665":null,"GO:0006666":null,"GO:0006673":null,"GO:0006675":null,"GO:0016255":null,"GO:0030148":null,"GO:0046467":null,"GO:0046512":null,"GO:0046513":null,"GO:0046521":null,"GO:0051999":null}}


id: GO:0042671
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which a cell becomes capable of differentiating autonomously into a retinal cone cell regardless of its environment; upon determination, the cell fate cannot be reversed.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"photoreceptor cell fate determination","termid":"GO:0043703"},{"relation_name":"part_of","term_name":"retinal cone cell fate commitment","termid":"GO:0046551"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"retinal cone cell fate determination","termid":"GO:0042671"}


id: GO:0030015
data:
  {"annotated_genes":["SJAG_04350","SJAG_01053","SJAG_04407","SJAG_00285","SJAG_01944","SJAG_02540","SJAG_03883","SJAG_03597","SJAG_00343"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[70256,73689,73998,85508,87652,88144,89955,111856,112391],"is_not":false,"summary":null,"term":"GO:0030015"}]},"cv_name":"cellular_component","definition":"The core of the CCR4-NOT complex. In Saccharomyces the CCR4-NOT core complex comprises Ccr4p, Caf1p, Caf40p, Caf130p, Not1p, Not2p, Not3p, Not4p, and Not5p.","definition_xrefs":["GOC:sart","PMID:11113136"],"direct_ancestors":[{"relation_name":"is_a","term_name":"intracellular protein-containing complex","termid":"GO:0140535"},{"relation_name":"part_of","term_name":"CCR4-NOT complex","termid":"GO:0030014"}],"gene_count":9,"genes_by_uniquename":{"SJAG_00285":null,"SJAG_00343":null,"SJAG_01053":null,"SJAG_01944":null,"SJAG_02540":null,"SJAG_03597":null,"SJAG_03883":null,"SJAG_04350":null,"SJAG_04407":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0032991","GO:0005575"],"is_obsolete":false,"name":"CCR4-NOT core complex","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"termid":"GO:0030015","terms_by_termid":{"GO:0030015":null}}


id: PR:O74525
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPCC70.04c gene.","definition_xrefs":["PRO:DNx","UniProtKB:O74525"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized membrane protein C70.04c (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC70.04c","synonyms":[{"name":"Spom972h-SPCC70.04c","type":"exact"}],"termid":"PR:O74525"}


id: PBO:0002692
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"20S proteasome component beta 6","termid":"PBO:0002692"}


id: GO:0034294
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The aggregation, arrangement and bonding together of a set of components to form a sexual spore wall, the specialized envelope lying outside the cell membrane of a spore derived from a product of meiosis.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"developmental process involved in reproduction","termid":"GO:0003006"},{"relation_name":"is_a","term_name":"spore wall assembly","termid":"GO:0042244"},{"relation_name":"is_a","term_name":"meiotic cell cycle process","termid":"GO:1903046"},{"relation_name":"part_of","term_name":"sexual sporulation","termid":"GO:0034293"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0007049"},{"rel_name":"part_of","termid":"GO:0071554"},{"rel_name":"part_of","termid":"GO:0044085"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0071554"}],"interesting_parent_ids":["GO:0008150","GO:0007049","GO:0044085","GO:0071554"],"is_obsolete":false,"name":"sexual spore wall assembly","synonyms":[{"name":"sexual spore wall formation","type":"exact"}],"termid":"GO:0034294"}


id: PBO:0060745
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NADH:ubiquinone oxidoreductase subunit B1 pseudogene 1","termid":"PBO:0060745"}


id: PBO:0085251
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Peripherally bound inner membrane protein of the mitochondrial matrix; involved in membrane insertion of C-terminus of Cox2p, interacts genetically and physically with Cox18p","termid":"PBO:0085251"}


id: GO:0010121
data:
  {"annotated_genes":["SJAG_03398","SJAG_00495"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[77250,108526],"is_not":false,"summary":null,"term":"GO:0010121"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of arginine into other compounds, including proline, via ornithine.","definition_xrefs":["GOC:pz"],"direct_ancestors":[{"relation_name":"is_a","term_name":"arginine catabolic process to proline","termid":"GO:0019493"}],"gene_count":2,"genes_by_uniquename":{"SJAG_00495":null,"SJAG_03398":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006520"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0044248"}],"interesting_parent_ids":["GO:0044248","GO:0044281","GO:0008150","GO:0006520"],"is_obsolete":false,"name":"arginine catabolic process to proline via ornithine","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"synonyms":[{"name":"arginine breakdown to proline via ornithine","type":"exact"},{"name":"arginine degradation to proline via ornithine","type":"exact"}],"termid":"GO:0010121","terms_by_termid":{"GO:0010121":null}}


id: PBO:0038796
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ADAM metallopeptidase domain 2","termid":"PBO:0038796"}


id: PBO:0003526
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zf-C2H2 type zinc finger protein, implicated in RNAi (predicted)","termid":"PBO:0003526"}


id: GO:0044018
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: acetyl-CoA + histone H3 L-lysine (position 36) = CoA + histone H3 N6-acetyl-L-lysine (position 36).","definition_xrefs":["EC:2.3.1.48"],"direct_ancestors":[{"relation_name":"is_a","term_name":"histone H3 acetyltransferase activity","termid":"GO:0010484"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0034212"},{"rel_name":"is_a","termid":"GO:0016746"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0140096"}],"interesting_parent_ids":["GO:0034212","GO:0016746","GO:0003674","GO:0140096","GO:0003824","GO:0016740"],"is_obsolete":false,"name":"histone H3K36 acetyltransferase activity","synonyms":[{"name":"histone H3-K36 acetyltransferase activity","type":"exact"},{"name":"histone acetylase activity (H3-K36 specific)","type":"exact"},{"name":"histone acetyltransferase activity (H3-K36 specific)","type":"exact"},{"name":"histone lysine N-acetyltransferase activity (H3-K36 specific)","type":"exact"}],"termid":"GO:0044018"}


id: GO:0009091
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of homoserine, alpha-amino-gamma-hydroxybutyric acid.","definition_xrefs":["GOC:go_curators","ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"serine family amino acid catabolic process","termid":"GO:0009071"},{"relation_name":"is_a","term_name":"homoserine metabolic process","termid":"GO:0009092"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044248"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0006520"}],"interesting_parent_ids":["GO:0008150","GO:0044248","GO:0044281","GO:0006520"],"is_obsolete":false,"name":"homoserine catabolic process","secondary_identifiers":["MetaCyc:HOMOCYSDEGR-PWY"],"synonyms":[{"name":"homoserine breakdown","type":"exact"},{"name":"homoserine catabolism","type":"exact"},{"name":"homoserine degradation","type":"exact"}],"termid":"GO:0009091"}


id: PBO:0029477
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_growth_on_cerulenin","termid":"PBO:0029477"}


id: PBO:0078118
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"T cell receptor alpha variable 7","termid":"PBO:0078118"}


id: PR:O94454
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A COP9 signalosome complex subunit 5 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx","PANTHER:PTHR10410:SF6","OMA:SCHPO00362"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"COP9 signalosome complex subunit 5 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC1687.13c","secondary_identifiers":["UniProtKB:O94454"],"synonyms":[{"name":"Spom972h-COPS5","type":"exact"}],"termid":"PR:O94454"}


id: MOD:00121
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively cross-links an L-cysteine residue and an L-threonine residue by a thioether bond to form (2S,3S,2'R)-3-methyllanthionine.","definition_xrefs":["PubMed:3769923","RESID:AA0112"],"direct_ancestors":[{"relation_name":"is_a","term_name":"3-methyllanthionine","termid":"MOD:01981"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"(2S,3S,2'R)-3-methyllanthionine","synonyms":[{"name":"(2S,3S)-2-amino-3-([(2R)-2-amino-2-carboxyethyl]sulfanyl)butanoic acid","type":"exact"},{"name":"(2S,3S,2'R)-2-amino-3-[(2-amino-2-carboxyethyl)thio]butanoic acid","type":"exact"},{"name":"(2S,3S,2'R)-3-methyllanthionine","type":"exact"},{"name":"(2S,3S,6R)-2,6-diamino-3-methyl-4-thiaheptanedioic acid","type":"exact"},{"name":"(2S,3S,6R)-3-methyllanthionine","type":"exact"},{"name":"(2S-[2R*,3R*(S*)])-2-amino-3-[(2-amino-2-carboxyethyl)thio]butanoic acid","type":"exact"},{"name":"3-methyl-D,L-lanthionine","type":"exact"},{"name":"CROSSLNK Beta-methyllanthionine (Cys-Thr)","type":"exact"},{"name":"CROSSLNK Beta-methyllanthionine (Thr-Cys)","type":"exact"},{"name":"XLNK-SCys-3Dhb","type":"exact"},{"name":"cysteine-3-D-butyrine thioether","type":"exact"}],"termid":"MOD:00121"}


id: PBO:0017558
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial anion transmembrane transporter (predicted)","termid":"PBO:0017558"}


id: GO:0033388
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of putrescine, 1,4-diaminobutane, from other compounds, including arginine.","definition_xrefs":["GOC:mah","MetaCyc:PWY-46"],"direct_ancestors":[{"relation_name":"is_a","term_name":"arginine metabolic process","termid":"GO:0006525"},{"relation_name":"is_a","term_name":"putrescine biosynthetic process","termid":"GO:0009446"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006520"}],"interesting_parent_ids":["GO:0044281","GO:0008150","GO:0006520"],"is_obsolete":false,"name":"putrescine biosynthetic process from arginine","synonyms":[{"name":"putrescine anabolism from arginine","type":"exact"},{"name":"putrescine biosynthesis from arginine","type":"exact"},{"name":"putrescine formation from arginine","type":"exact"},{"name":"putrescine synthesis from arginine","type":"exact"}],"termid":"GO:0033388"}


id: PR:O74374
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A phosphoglucomutase-1 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PANTHER:PTHR22573:SF5","OMA:SCHPO03429","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"phosphoglucomutase (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC32F12.10","secondary_identifiers":["UniProtKB:O74374"],"synonyms":[{"name":"PGM (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-PGM1","type":"exact"},{"name":"glucose phosphomutase (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:O74374"}


id: GO:0071449
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a lipid hydroperoxide stimulus. Lipid hydroperoxide is the highly reactive primary oxygenated products of polyunsaturated fatty acids.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to lipid hydroperoxide","termid":"GO:0006982"},{"relation_name":"is_a","term_name":"cellular response to lipid","termid":"GO:0071396"},{"relation_name":"is_a","term_name":"cellular response to hydroperoxide","termid":"GO:0071447"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cellular response to lipid hydroperoxide","synonyms":[{"name":"cellular response to LHPO","type":"exact"}],"termid":"GO:0071449"}


id: GO:0039654
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Fusion of a virus membrane with a host endosome membrane. Occurs after internalization of the virus through the endosomal pathway, and results in release of the virus contents into the cell.","definition_xrefs":["VZ:992","GOC:bf","UniProtKB-KW:KW-1170"],"direct_ancestors":[{"relation_name":"is_a","term_name":"membrane fusion involved in viral entry into host cell","termid":"GO:0039663"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"fusion of virus membrane with host endosome membrane","secondary_identifiers":["GO:0075517","GO:0075501"],"synonyms":[{"name":"fusion of virus membrane with host endosomal membrane","type":"exact"},{"name":"viral entry into host cell via caveolae-mediated endocytosis followed by membrane fusion with the endosome membrane","type":"narrow"},{"name":"viral entry into host cell via caveolin-mediated endocytosis followed by membrane fusion with the endosome membrane","type":"narrow"},{"name":"viral entry into host cell via clathrin-mediated endocytosis followed by membrane fusion with the endosome membrane","type":"narrow"},{"name":"viral entry into host cell via endocytosis followed by membrane fusion with host endosome","type":"related"},{"name":"viral entry into host cell via endocytosis followed by membrane fusion with the endosome membrane","type":"related"},{"name":"viral penetration via endocytosis followed by caveolae-mediated membrane fusion with the endosome membrane","type":"narrow"},{"name":"viral penetration via endocytosis followed by clathrin-mediated membrane fusion with the endosome membrane","type":"narrow"}],"termid":"GO:0039654"}


id: GO:1903672
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of sprouting angiogenesis.","definition_xrefs":["GO_REF:0000058","PMID:16756958","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of angiogenesis","termid":"GO:0045766"},{"relation_name":"is_a","term_name":"regulation of sprouting angiogenesis","termid":"GO:1903670"},{"relation_name":"positively_regulates","term_name":"sprouting angiogenesis","termid":"GO:0002040"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of sprouting angiogenesis","synonyms":[{"name":"activation of sprouting angiogenesis","type":"narrow"},{"name":"up regulation of sprouting angiogenesis","type":"exact"},{"name":"up-regulation of sprouting angiogenesis","type":"exact"},{"name":"upregulation of sprouting angiogenesis","type":"exact"}],"termid":"GO:1903672"}


id: MOD:01454
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively crosslinks an N-terminal L-proline residue and a strand of DNA at the C-1 of a ribose, freeing the nucleotide base and forming N-(DNA-1',2'-dideoxyribos-1'-ylidene)-L-prolinium.","definition_xrefs":["PubMed:9030608","RESID:AA0494","PubMed:11847126","PubMed:10833024"],"direct_ancestors":[{"relation_name":"is_a","term_name":"deoxyribonucleic acid linked residue","termid":"MOD:00750"},{"relation_name":"is_a","term_name":"modified L-proline residue","termid":"MOD:00915"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"N-(DNA-1',2'-dideoxyribos-1'-ylidene)-L-prolinium","synonyms":[{"name":"(1Z,2S)-2-carboxy-1-[(3R,4R)-3,4-dihydroxy-5-(phosphonooxy)pentylidene]pyrrolidinium","type":"exact"},{"name":"DNA glycosylase proline Schiff base intermediate","type":"related"},{"name":"N-(DNA-1',2'-dideoxyribos-1'-ylidene)-L-prolinium","type":"exact"}],"termid":"MOD:01454"}


id: PR:O42970
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPBC1E8.05 gene.","definition_xrefs":["UniProtKB:O42970","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized serine-rich protein C1E8.05 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC1E8.05","synonyms":[{"name":"Spom972h-SPBC1E8.05","type":"exact"}],"termid":"PR:O42970"}


id: GO:0030033
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Formation of a microvillus, a thin cylindrical membrane-covered projection on the surface of a cell.","definition_xrefs":["GOC:mah","ISBN:0815316194"],"direct_ancestors":[{"relation_name":"is_a","term_name":"microvillus organization","termid":"GO:0032528"},{"relation_name":"is_a","term_name":"plasma membrane bounded cell projection assembly","termid":"GO:0120031"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0044085"}],"interesting_parent_ids":["GO:0044085","GO:0008150"],"is_obsolete":false,"name":"microvillus assembly","synonyms":[{"name":"microvillus biogenesis","type":"related"}],"termid":"GO:0030033"}


id: GO:0097491
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which the migration of a sympathetic neuron projection is directed to a specific target site in response to a combination of attractive and repulsive cues.","definition_xrefs":["PMID:22790009","GOC:BHF","GOC:rl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"neuron projection guidance","termid":"GO:0097485"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"sympathetic neuron projection guidance","synonyms":[{"name":"sympathetic neurite guidance","type":"narrow"},{"name":"sympathetic neuron process guidance","type":"exact"},{"name":"sympathetic neuron protrusion guidance","type":"exact"},{"name":"sympathetic neuronal cell projection guidance","type":"exact"}],"termid":"GO:0097491"}


id: PBO:0042477
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CDH3 antisense RNA 1","termid":"PBO:0042477"}


id: PBO:0082472
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Calnexin; integral membrane ER chaperone involved in folding and quality control of glycoproteins; chaperone activity is inhibited by Mpd1p, with which Cne1p interacts; 24% identical to mammalian calnexin; Ca+ binding not yet shown in yeast","termid":"PBO:0082472"}


id: PBO:0055310
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2737","termid":"PBO:0055310"}


id: PBO:0060577
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NBPF member 13, pseudogene","termid":"PBO:0060577"}


id: PBO:0056914
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MYC-induced long non-coding RNA","termid":"PBO:0056914"}


id: GO:0097650
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"An incomplete microtubule containing 10 protofilaments that fuses with a complete microtubule called A tubule (containing 13 protofilaments) to form an axonemal outer doublet.","definition_xrefs":["GOC:cilia","ISBN:0716731363"],"direct_ancestors":[{"relation_name":"is_a","term_name":"axonemal microtubule","termid":"GO:0005879"},{"relation_name":"part_of","term_name":"axonemal outer doublet","termid":"GO:0097545"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0015630"},{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0015630","GO:0005737","GO:0005575"],"is_obsolete":false,"name":"B axonemal microtubule","synonyms":[{"name":"B tubule","type":"broad"}],"termid":"GO:0097650"}


id: MOD:00015
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts a source amino acid residue to an L-glutamic acid.","definition_xrefs":["DeltaMass:0","PubMed:9326660","PubMed:4565668","PubMed:6692818","ChEBI:29972","PubMed:4922541","PubMed:957425","PubMed:1881881","RESID:AA0006"],"direct_ancestors":[{"relation_name":"is_a","term_name":"modified residue that can arise from different natural residues","termid":"MOD:00859"},{"relation_name":"is_a","term_name":"natural, standard, encoded residue","termid":"MOD:01441"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"L-glutamic acid residue","synonyms":[{"name":"(2S)-2-aminopentanedioic acid","type":"exact"},{"name":"1-aminopropane-1,3-dicarboxylic acid","type":"exact"},{"name":"2-aminoglutaric acid","type":"exact"},{"name":"2-azanylpentanedioic acid","type":"exact"},{"name":"Glu","type":"exact"},{"name":"L-glutamic acid","type":"exact"},{"name":"alpha-aminoglutaric acid","type":"exact"},{"name":"glutaminic acid","type":"exact"}],"termid":"MOD:00015"}


id: SO:0000861
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A primary transcript that is capped.","definition_xrefs":["SO:xp"],"direct_ancestors":[{"relation_name":"adjacent_to","term_name":"cap","termid":"SO:0000581"},{"relation_name":"has_quality","term_name":"capped","termid":"SO:0000146"},{"relation_name":"is_a","term_name":"primary_transcript","termid":"SO:0000185"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"capped_primary_transcript","synonyms":[{"name":"capped primary transcript","type":"exact"}],"termid":"SO:0000861"}


id: PBO:0047903
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"fragile site, aphidicolin type, common, fra(7)(q11)","termid":"PBO:0047903"}


id: PR:Q09812
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- atg22 gene.","definition_xrefs":["UniProtKB:Q09812","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"autophagy-related protein 22 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC2G11.13","synonyms":[{"name":"Spom972h-atg22","type":"exact"}],"termid":"PR:Q09812"}


id: PBO:0046357
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ectonucleotide pyrophosphatase/phosphodiesterase 7 pseudogene 15","termid":"PBO:0046357"}


id: PBO:0086665
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Putative protein of unknown function; identified by expression profiling and mass spectrometry; SWAT-GFP fusion protein localizes to the nucleus","termid":"PBO:0086665"}


id: GO:0046997
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of an oxidation-reduction (redox) reaction in which a CH-NH group acts as a hydrogen or electron donor and reduces a flavin.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the CH-NH group of donors","termid":"GO:0016645"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003824","GO:0016491","GO:0003674"],"is_obsolete":false,"name":"oxidoreductase activity, acting on the CH-NH group of donors, flavin as acceptor","secondary_identifiers":["EC:1.5.8.-"],"termid":"GO:0046997"}


id: PBO:0072946
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small Cajal body-specific RNA 26B","termid":"PBO:0072946"}


id: PBO:0053475
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 445","termid":"PBO:0053475"}


id: PBO:0059721
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MT-CO2 pseudogene 29","termid":"PBO:0059721"}


id: GO:0031770
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a growth hormone-releasing hormone receptor.","definition_xrefs":["GOC:nln","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"neuropeptide receptor binding","termid":"GO:0071855"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005515"},{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0005488","GO:0005515","GO:0003674"],"is_obsolete":false,"name":"growth hormone-releasing hormone receptor binding","synonyms":[{"name":"growth hormone-releasing hormone receptor ligand","type":"narrow"}],"termid":"GO:0031770"}


id: GO:0008750
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: NADPH + H+ + NAD+ = NADP+ + NADH + H+. The reaction is A-specific (i.e. the pro-R hydrogen is transferred from the 4-position of reduced nicotinamide cofactor) with respect to NAD+ and B-specific (i.e. the pro-S hydrogen is transferred) with respect to NADP+.","definition_xrefs":["EC:1.6.1.2"],"direct_ancestors":[{"relation_name":"is_a","term_name":"NAD(P)+ transhydrogenase activity","termid":"GO:0008746"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0016491","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"NAD(P)+ transhydrogenase (AB-specific) activity","secondary_identifiers":["MetaCyc:PYRNUTRANSHYDROGEN-RXN"],"synonyms":[{"name":"NAD(P) transhydrogenase (AB-specific) activity","type":"related"},{"name":"NADPH:NAD+ oxidoreductase (AB-specific)","type":"related"},{"name":"pyridine nucleotide transhydrogenase activity","type":"broad"},{"name":"transhydrogenase activity","type":"broad"}],"termid":"GO:0008750"}


id: PBO:0031625
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abolished_ascospore_wall_assembly","termid":"PBO:0031625"}


id: GO:0150058
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A G protein-coupled receptor complex that serves as a receptor for amylin polypeptide (AMY) and consists of a calcitonin receptor (CTR/CALCR) and a receptor activity-modifying protein (RAMP) 3. Amylin receptor complex 3 (AMY3) also serves as a receptor for the amyloid-beta complex. Ligand binding to AMY3 results in increased cytosolic calcium ion levels and in activation on multiple intracellular signaling pathways.","definition_xrefs":["GOC:aruk","GOC:bc","PMID:22500019"],"direct_ancestors":[{"relation_name":"is_a","term_name":"amylin receptor complex","termid":"GO:1903440"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0005886"}],"interesting_parent_ids":["GO:0005575","GO:0005886","GO:0032991"],"is_obsolete":false,"name":"amylin receptor complex 3","synonyms":[{"name":"AMY3 complex","type":"exact"}],"termid":"GO:0150058"}


id: PBO:0039657
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"adaptor related protein complex 2 subunit alpha 1","termid":"PBO:0039657"}


id: PBO:0040720
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"BCL9 pseudogene 1","termid":"PBO:0040720"}


id: PR:O13636
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A mitochondrial import inner membrane translocase subunit TIM50 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PANTHER:PTHR12210:SF3","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial import inner membrane translocase subunit tim50 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC17A3.01c","secondary_identifiers":["UniProtKB:O13636"],"synonyms":[{"name":"Spom972h-TIMM50","type":"exact"},{"name":"pi044","type":"related"}],"termid":"PR:O13636"}


id: PBO:0054646
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2051","termid":"PBO:0054646"}


id: GO:0030640
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of polyketides, any of a diverse group of natural products synthesized via linear poly-beta-ketones, which are themselves formed by repetitive head-to-tail addition of acetyl (or substituted acetyl) units indirectly derived from acetate (or a substituted acetate) by a mechanism similar to that for fatty acid biosynthesis but without the intermediate reductive steps.","definition_xrefs":["ISBN:0198506732","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"polyketide metabolic process","termid":"GO:0030638"},{"relation_name":"is_a","term_name":"secondary metabolite catabolic process","termid":"GO:0090487"},{"relation_name":"is_a","term_name":"organic substance catabolic process","termid":"GO:1901575"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0019748"}],"interesting_parent_ids":["GO:0019748","GO:0008150"],"is_obsolete":false,"name":"polyketide catabolic process","synonyms":[{"name":"polyketide breakdown","type":"exact"},{"name":"polyketide catabolism","type":"exact"},{"name":"polyketide degradation","type":"exact"}],"termid":"GO:0030640"}


id: PBO:0059917
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MT-ND2 pseudogene 3","termid":"PBO:0059917"}


id: PBO:0031818
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abolished_autophagy","termid":"PBO:0031818"}


id: GO:0015967
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of diadenosine tetraphosphate, a derivative of the nucleoside adenosine with four phosphate groups attached.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"diadenosine polyphosphate catabolic process","termid":"GO:0015961"},{"relation_name":"is_a","term_name":"diadenosine tetraphosphate metabolic process","termid":"GO:0015965"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0044248"},{"rel_name":"is_a","termid":"GO:0055086"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0044248","GO:0008150","GO:0044281","GO:0055086"],"is_obsolete":false,"name":"diadenosine tetraphosphate catabolic process","synonyms":[{"name":"diadenosine tetraphosphate breakdown","type":"exact"},{"name":"diadenosine tetraphosphate catabolism","type":"exact"},{"name":"diadenosine tetraphosphate degradation","type":"exact"}],"termid":"GO:0015967"}


id: PBO:0056909
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MYC inducible lncRNA inactivating p53","termid":"PBO:0056909"}


id: GO:0035736
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The multiplication or reproduction of cells, resulting in the expansion of a cell population that contributes to compound eye morphogenesis.","definition_xrefs":["GOC:sart","GOC:bf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell population proliferation","termid":"GO:0008283"},{"relation_name":"part_of","term_name":"compound eye morphogenesis","termid":"GO:0001745"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cell proliferation involved in compound eye morphogenesis","termid":"GO:0035736"}


id: PBO:0068462
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U1 small nuclear 39, pseudogene","termid":"PBO:0068462"}


id: GO:0050393
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: vinylacetyl-CoA = (2E)-butenoyl-CoA.","definition_xrefs":["RHEA:10572"],"direct_ancestors":[{"relation_name":"is_a","term_name":"intramolecular oxidoreductase activity, transposing C=C bonds","termid":"GO:0016863"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016853"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003824","GO:0016853","GO:0003674"],"is_obsolete":false,"name":"vinylacetyl-CoA delta-isomerase activity","secondary_identifiers":["MetaCyc:VINYLACETYL-COA-DELTA-ISOMERASE-RXN","KEGG_REACTION:R03031","EC:5.3.3.3"],"synonyms":[{"name":"delta3-cis-delta2-trans-enoyl-CoA isomerase","type":"broad"},{"name":"vinylacetyl coenzyme A delta-isomerase activity","type":"related"},{"name":"vinylacetyl coenzyme A isomerase activity","type":"related"},{"name":"vinylacetyl-CoA D-isomerase activity","type":"exact"},{"name":"vinylacetyl-CoA delta3-delta2-isomerase activity","type":"related"}],"termid":"GO:0050393"}


id: GO:0043846
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A heptamer that includes the tau and gamma products of the dnaX gene and the chi/psi subcomplex. Confers structural asymmetry that allows the polymerase to replicate both leading and lagging strands.","definition_xrefs":["PMID:12940977"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nuclear protein-containing complex","termid":"GO:0140513"},{"relation_name":"part_of","term_name":"DNA polymerase III complex","termid":"GO:0009360"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0005634"}],"interesting_parent_ids":["GO:0032991","GO:0005634","GO:0005575"],"is_obsolete":false,"name":"DNA polymerase III, clamp loader complex","synonyms":[{"name":"DNA polymerase III, DnaX complex","type":"exact"},{"name":"DNA polymerase III, DnaX subcomplex","type":"exact"},{"name":"clamp loader complex","type":"broad"}],"termid":"GO:0043846"}


id: PR:O74773
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A DNA mismatch repair protein Msh2 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO03237","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DNA mismatch repair protein msh2 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC19G7.01c","secondary_identifiers":["UniProtKB:O74773"],"synonyms":[{"name":"Spom972h-MSH2","type":"exact"}],"termid":"PR:O74773"}


id: PBO:0074028
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"solute carrier family 25 member 16","termid":"PBO:0074028"}


id: PBO:0029248
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_protein_localization_to_centromere_during_mitotic_metaphase","termid":"PBO:0029248"}


id: PBO:0110236
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"rixosome complex/ Las1 complex endonuclease Las1","termid":"PBO:0110236"}


id: PBO:0038729
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"actin gamma 1 pseudogene 24","termid":"PBO:0038729"}


id: GO:0097606
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that increases the frequency, rate or extent of the passage or uptake of molecules by the nuclear envelope.","definition_xrefs":["GOC:pr"],"gene_count":0,"genotype_count":0,"name":"obsolete positive regulation of nuclear envelope permeability (obsolete GO:0097606)","synonyms":[{"name":"positive regulation of nuclear membrane permeability","type":"related"}],"termid":"GO:0097606"}


id: PBO:0039707
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"amyloid beta precursor like protein 2","termid":"PBO:0039707"}


id: FYPO:0003361
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which the observed rate of superoxide dismutase activity is normal (i.e. indistinguishable from wild type).","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal catalytic activity","termid":"FYPO:0000660"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0000654"},{"rel_name":"is_a","termid":"FYPO:0000257"}],"interesting_parent_ids":["FYPO:0000652","FYPO:0000257","FYPO:0000654"],"is_obsolete":false,"name":"normal superoxide dismutase activity","termid":"FYPO:0003361"}


id: PBO:0059492
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"macrophage stimulating 1 like (pseudogene)","termid":"PBO:0059492"}


id: PBO:0075965
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"StAR related lipid transfer domain containing 6","termid":"PBO:0075965"}


id: GO:0009874
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. A mechanism that functions to prevent self-fertilization in flowering plants that is determined by the diploid genotype of the parent plant. In sporophytic incompatibility the pollen does not germinate, consequently fertilization does not take place.","definition_xrefs":["ISBN:0387987819"],"gene_count":0,"genotype_count":0,"name":"obsolete sporophytic self-incompatibility (obsolete GO:0009874)","synonyms":[{"name":"sporophytic self-incompatibility","type":"exact"}],"termid":"GO:0009874"}


id: GO:0120034
data:
  {"annotated_genes":["SJAG_01794","SJAG_04509","SJAG_02379","SJAG_00514","SJAG_03453"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[85591,86543,106709,89114,83683],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1902917"}]},"cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of plasma membrane bounded cell projection assembly.","definition_xrefs":["GOC:krc"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of cell projection organization","termid":"GO:0031346"},{"relation_name":"is_a","term_name":"positive regulation of cellular component biogenesis","termid":"GO:0044089"},{"relation_name":"is_a","term_name":"regulation of plasma membrane bounded cell projection assembly","termid":"GO:0120032"},{"relation_name":"positively_regulates","term_name":"plasma membrane bounded cell projection assembly","termid":"GO:0120031"}],"gene_count":5,"genes_by_uniquename":{"SJAG_00514":null,"SJAG_01794":null,"SJAG_02379":null,"SJAG_03453":null,"SJAG_04509":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"positively_regulates","termid":"GO:0044085"},{"rel_name":"regulates","termid":"GO:0044085"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0044085"],"is_obsolete":false,"name":"positive regulation of plasma membrane bounded cell projection assembly","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0120034","terms_by_termid":{"GO:1902917":null}}


id: PBO:0061765
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ornithine decarboxylase antizyme 1","termid":"PBO:0061765"}


id: PBO:0071482
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L32 pseudogene 23","termid":"PBO:0071482"}


id: FYPO:0006024
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which the binding of a protein to one or more actin filaments is normal (i.e. indistinguishable from wild type). The relevant actin-binding protein may be encoded by the mutated gene, or by a different gene.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal protein complex binding","termid":"FYPO:0005232"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0000702"},{"rel_name":"is_a","termid":"FYPO:0000652"}],"interesting_parent_ids":["FYPO:0000702","FYPO:0000257","FYPO:0000652"],"is_obsolete":false,"name":"normal actin filament binding","synonyms":[{"name":"normal F-actin binding","type":"exact"},{"name":"normal filamentous actin binding","type":"exact"}],"termid":"FYPO:0006024"}


id: PBO:0053994
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1315","termid":"PBO:0053994"}


id: PBO:0070040
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 1337, pseudogene","termid":"PBO:0070040"}


id: PBO:0036353
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cytoplasmic translation release factor class I eRF1","termid":"PBO:0036353"}


id: PBO:0062469
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 7 subfamily E member 160 pseudogene","termid":"PBO:0062469"}


id: PBO:0083466
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Dubious open reading frame; unlikely to encode a functional protein, based on available experimental and comparative sequence data; partially overlaps the verified gene NAP1","termid":"PBO:0083466"}


id: GO:0048759
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which a relatively unspecialized cell acquires specialized features of a vessel member cell. A vessel member cell is one of the components of a vessel in the xylem. It is a dead cell with the wall between adjacent members being variously perforated and the walls that persist variously thickened.","definition_xrefs":["PO:0002003","GOC:jid"],"direct_ancestors":[{"relation_name":"is_a","term_name":"tracheary element differentiation","termid":"GO:1905177"},{"relation_name":"part_of","term_name":"xylem development","termid":"GO:0010089"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"xylem vessel member cell differentiation","synonyms":[{"name":"vessel element cell differentiation","type":"broad"},{"name":"vessel member cell differentiation","type":"broad"}],"termid":"GO:0048759"}


id: PBO:0072544
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein SA pseudogene 74","termid":"PBO:0072544"}


id: PBO:0045218
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DNAJC8 pseudogene","termid":"PBO:0045218"}


id: PBO:0005836
data:
  {"annotation_feature_type":"gene","cv_name":"disease_associated","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"thyroid adenoma","termid":"PBO:0005836"}


id: GO:0043387
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of a mycotoxin, any poisonous substance produced by a fungus.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"toxin catabolic process","termid":"GO:0009407"},{"relation_name":"is_a","term_name":"mycotoxin metabolic process","termid":"GO:0043385"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044248"},{"rel_name":"is_a","termid":"GO:0019748"},{"rel_name":"is_a","termid":"GO:0098754"}],"interesting_parent_ids":["GO:0019748","GO:0098754","GO:0008150","GO:0044248"],"is_obsolete":false,"name":"mycotoxin catabolic process","synonyms":[{"name":"mycotoxin breakdown","type":"exact"},{"name":"mycotoxin catabolism","type":"exact"},{"name":"mycotoxin degradation","type":"exact"}],"termid":"GO:0043387"}


id: PBO:0065888
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RAB35 antisense RNA 1","termid":"PBO:0065888"}


id: GO:0016551
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The insertion into or deletion from an RNA molecule of nucleotide residues not encoded in DNA; takes place after transcription.","definition_xrefs":["PMID:11092837"],"gene_count":0,"genotype_count":0,"name":"obsolete posttranscriptional insertion or deletion editing (obsolete GO:0016551)","synonyms":[{"name":"posttranscriptional insertion or deletion editing","type":"exact"},{"name":"posttranscriptional insertion/deletion editing","type":"exact"}],"termid":"GO:0016551"}


id: PBO:0074273
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"schlafen family member 14","termid":"PBO:0074273"}


id: PBO:0091856
data:
  {"annotation_feature_type":"gene","cv_name":"misc","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"the Scp1 C-terminal domain forms a dimer of dimers","termid":"PBO:0091856"}


id: PBO:0052619
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"KRIT1 ankyrin repeat containing","termid":"PBO:0052619"}


id: PBO:0033784
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_anaphase-promoting_complex-dependent_protein_catabolic_process","termid":"PBO:0033784"}


id: SO:0000886
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"Recoded mRNA where a block of nucleotides is not translated.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"recoded","termid":"SO:0000881"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"recoded_by_translational_bypass","synonyms":[{"name":"recoded by translational bypass","type":"exact"}],"termid":"SO:0000886"}


id: GO:0008928
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: alpha-D-mannose 1-phosphate + GDP + H+ = GDP-alpha-D-mannose + phosphate.","definition_xrefs":["RHEA:12905"],"direct_ancestors":[{"relation_name":"is_a","term_name":"guanylyltransferase activity","termid":"GO:0070568"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016779"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016779","GO:0016740","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"mannose-1-phosphate guanylyltransferase (GDP) activity","secondary_identifiers":["EC:2.7.7.22","KEGG_REACTION:R00883","MetaCyc:MANNPGUANYLTRANGDP-RXN"],"synonyms":[{"name":"GDP mannose phosphorylase activity","type":"related"},{"name":"GDP-mannose 1-phosphate guanylyltransferase activity","type":"related"},{"name":"GDP-mannose phosphorylase activity","type":"related"},{"name":"GDP-mannose pyrophosphorylase activity","type":"related"},{"name":"GDP:D-mannose-1-phosphate guanylyltransferase activity","type":"related"},{"name":"GDP:alpha-D-mannose-1-phosphate guanylyltransferase activity","type":"related"},{"name":"GDP:mannose-1-phosphate guanylyltransferase activity","type":"exact"},{"name":"guanosine diphosphate-mannose 1-phosphate guanylyltransferase activity","type":"related"},{"name":"guanosine diphosphomannose phosphorylase activity","type":"related"},{"name":"mannose 1-phosphate (guanosine diphosphate) guanylyltransferase activity","type":"related"},{"name":"mannose 1-phosphate guanylyltransferase activity","type":"related"}],"termid":"GO:0008928"}


id: GO:0035192
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The symmetric outward movement of the syncytial nuclei from their positions in the ellipsoid toward the periphery of the embryo, during mitotic cycles 8 and 9. This movement results in the placement of nuclei in a uniform monolayer at the cortex of the developing embryo.","definition_xrefs":["PMID:8314839"],"direct_ancestors":[{"relation_name":"is_a","term_name":"syncytial nuclear migration","termid":"GO:0035190"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0051179","GO:0006810"],"is_obsolete":false,"name":"nuclear cortical migration","termid":"GO:0035192"}


id: PBO:0077001
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"THAP domain containing 12 pseudogene 3","termid":"PBO:0077001"}


id: PBO:0057995
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 3919","termid":"PBO:0057995"}


id: FYPO:0002985
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of RNA measured in a cell during a cellular response to methyl methanesulfonate is higher than normal. Total RNA or a specific RNA may be affected.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased RNA level during vegetative growth","termid":"FYPO:0000825"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"output_of","termid":"FYPO:0006551"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0001985","FYPO:0005447","FYPO:0006551","FYPO:0000002"],"is_obsolete":false,"name":"increased RNA level during cellular response to methyl methanesulfonate","synonyms":[{"name":"increased RNA accumulation during cellular response to methyl methanesulfonate","type":"related"},{"name":"increased RNA level during cellular response to MMS","type":"exact"},{"name":"increased RNA level during cellular response to methyl methanesulfonate during mitotic cell cycle","type":"related"},{"name":"increased RNA level during cellular response to methyl methanesulfonate during vegetative growth","type":"exact"},{"name":"increased RNA level during cellular response to methyl methanesulphonate","type":"exact"},{"name":"increased mRNA level during cellular response to methyl methanesulfonate","type":"narrow"},{"name":"increased transcript level during cellular response to methyl methanesulfonate","type":"exact"}],"termid":"FYPO:0002985"}


id: PBO:0051339
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"immunoglobulin kappa variable 2D-14 (pseudogene)","termid":"PBO:0051339"}


id: GO:0098949
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"OBSOLETE. The component of the postsynaptic endosome membrane consisting of the gene products and protein complexes having either part of their peptide sequence embedded in the hydrophobic region of the membrane or some other covalently attached group such as a GPI anchor that is similarly embedded in the membrane.","definition_xrefs":["GOC:dos","GOC:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete intrinsic component of postsynaptic endosome membrane (obsolete GO:0098949)","synonyms":[{"name":"intrinsic to postsynaptic endosome membrane","type":"narrow"}],"termid":"GO:0098949"}


id: GO:0033601
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the rate or extent of mammary gland epithelial cell proliferation.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of mammary gland epithelial cell proliferation","termid":"GO:0033599"},{"relation_name":"is_a","term_name":"positive regulation of epithelial cell proliferation","termid":"GO:0050679"},{"relation_name":"is_a","term_name":"positive regulation of developmental process","termid":"GO:0051094"},{"relation_name":"is_a","term_name":"positive regulation of multicellular organismal process","termid":"GO:0051240"},{"relation_name":"positively_regulates","term_name":"mammary gland epithelial cell proliferation","termid":"GO:0033598"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of mammary gland epithelial cell proliferation","synonyms":[{"name":"activation of mammary gland epithelial cell proliferation","type":"narrow"},{"name":"stimulation of mammary gland epithelial cell proliferation","type":"narrow"},{"name":"up regulation of mammary gland epithelial cell proliferation","type":"exact"},{"name":"up-regulation of mammary gland epithelial cell proliferation","type":"exact"},{"name":"upregulation of mammary gland epithelial cell proliferation","type":"exact"}],"termid":"GO:0033601"}


id: PR:Q9USY4
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- abp2 gene.","definition_xrefs":["UniProtKB:Q9USY4","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ARS-binding protein 2 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC1861.02","synonyms":[{"name":"Spom972h-abp2","type":"exact"}],"termid":"PR:Q9USY4"}


id: PBO:0059120
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MPC1 divergent transcript","termid":"PBO:0059120"}


id: PBO:0057754
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 1913","termid":"PBO:0057754"}


id: MOD:01339
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively replaces a hydrogen atom with an ethyl group.","definition_xrefs":["Unimod:280","PubMed:9629898"],"direct_ancestors":[{"relation_name":"is_a","term_name":"alkylated residue","termid":"MOD:00001"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ethylated residue","synonyms":[{"name":"EtRes","type":"exact"},{"name":"Ethyl","type":"related"},{"name":"Ethylation","type":"related"}],"termid":"MOD:01339"}


id: PBO:0074727
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nucleolar RNA, H/ACA box 84","termid":"PBO:0074727"}


id: PBO:0052981
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"lactamase beta like 1","termid":"PBO:0052981"}


id: PBO:0073062
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SDA1 domain containing 1 pseudogene 4","termid":"PBO:0073062"}


id: PBO:0073032
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"scratch family transcriptional repressor 2","termid":"PBO:0073032"}


id: GO:0033617
data:
  {"annotated_genes":["SJAG_04154","SJAG_03296","SJAG_05302","SJAG_04553","SJAG_03873","SJAG_03337","SJAG_03399","SJAG_03322","SJAG_05199","SJAG_01996","SJAG_02979","SJAG_02975","SJAG_02480","SJAG_01140","SJAG_04603","SJAG_05398","SJAG_02229","SJAG_00852","SJAG_06046","SJAG_03046","SJAG_04116","SJAG_00449","SJAG_04348"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[70421,71876,72293,74989,75909,77358,84779,84966,87321,87741,90273,90288,92934,97589,99246,99504,102293,102595,102793,102904,112293,112438,113537],"is_not":false,"summary":null,"term":"GO:0033617"}]},"cv_name":"biological_process","definition":"The aggregation, arrangement and bonding together of a set of components to form respiratory chain complex IV (also known as cytochrome c oxidase) in the mitochondrial inner membrane.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"respiratory chain complex IV assembly","termid":"GO:0008535"},{"relation_name":"is_a","term_name":"mitochondrial respiratory chain complex assembly","termid":"GO:0033108"}],"gene_count":23,"genes_by_uniquename":{"SJAG_00449":null,"SJAG_00852":null,"SJAG_01140":null,"SJAG_01996":null,"SJAG_02229":null,"SJAG_02480":null,"SJAG_02975":null,"SJAG_02979":null,"SJAG_03046":null,"SJAG_03296":null,"SJAG_03322":null,"SJAG_03337":null,"SJAG_03399":null,"SJAG_03873":null,"SJAG_04116":null,"SJAG_04154":null,"SJAG_04348":null,"SJAG_04553":null,"SJAG_04603":null,"SJAG_05199":null,"SJAG_05302":null,"SJAG_05398":null,"SJAG_06046":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0044085"},{"rel_name":"part_of","termid":"GO:0007005"},{"rel_name":"is_a","termid":"GO:0065003"}],"interesting_parent_ids":["GO:0008150","GO:0007005","GO:0065003","GO:0044085"],"is_obsolete":false,"name":"mitochondrial cytochrome c oxidase assembly","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"synonyms":[{"name":"mitochondrial cytochrome c oxidase biogenesis","type":"broad"},{"name":"mitochondrial cytochrome c oxidase complex assembly","type":"exact"},{"name":"mitochondrial respiratory chain complex IV assembly","type":"exact"}],"termid":"GO:0033617","terms_by_termid":{"GO:0033617":null}}


id: PBO:0087975
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Triose phosphate isomerase, abundant glycolytic enzyme; mRNA half-life is regulated by iron availability; transcription is controlled by activators Reb1p, Gcr1p, and Rap1p through binding sites in the 5' non-coding region; inhibition of Tpi1p activity by PEP (phosphoenolpyruvate) stimulates redox metabolism in respiring cells; E104D mutation in human homolog TPI1 causes a rare autosomal disease; human TPI1 can complement yeast null mutant","termid":"PBO:0087975"}


id: GO:0140399
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalyzes the reaction: 8-O-methylsterigmatocystin + 2 [reduced NADPH--hemoprotein reductase] + 2 O2 = aflatoxin B + 2 [oxidized NADPH--hemoprotein reductase] + H2O + methanol + CO2. Produces both aflatoxin B(1) and aflatoxin B(2).","definition_xrefs":["EC:1.14.14.117"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen","termid":"GO:0016712"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0016491","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"aflatoxin B synthase activity","secondary_identifiers":["RHEA:35759","MetaCyc:RXN-9497","MetaCyc:RXN-9502"],"termid":"GO:0140399"}


id: GO:0034161
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate, or extent of toll-like receptor 8 signaling pathway.","definition_xrefs":["PMID:17328678","GOC:add","PMID:16551253"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of toll-like receptor 8 signaling pathway","termid":"GO:0034159"},{"relation_name":"is_a","term_name":"positive regulation of pattern recognition receptor signaling pathway","termid":"GO:0062208"},{"relation_name":"positively_regulates","term_name":"toll-like receptor 8 signaling pathway","termid":"GO:0034158"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"positively_regulates","termid":"GO:0023052"},{"rel_name":"regulates","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"positive regulation of toll-like receptor 8 signaling pathway","synonyms":[{"name":"positive regulation of TLR8 signaling pathway","type":"exact"},{"name":"positive regulation of toll-like receptor 8 signalling pathway","type":"exact"}],"termid":"GO:0034161"}


id: GO:0034884
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: gamma-N-formylaminovinylacetaldehyde + H2O = gamma-N-formylaminovinylacetate + 2 H+ + 2 e-.","definition_xrefs":["UM-BBD_reactionID:r1349"],"gene_count":0,"genotype_count":0,"name":"obsolete gamma-N-formylaminovinylacetaldehyde dehydrogenase activity (obsolete GO:0034884)","synonyms":[{"name":"gamma-N-formylaminovinylacetaldehyde dehydrogenase activity","type":"exact"}],"termid":"GO:0034884"}


id: PR:Q9HDT7
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPCP20C8.02c gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q9HDT7"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"UPF0321 protein P20C8.02c (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCP20C8.02c","synonyms":[{"name":"Spom972h-SPCP20C8.02c","type":"exact"}],"termid":"PR:Q9HDT7"}


id: GO:1902327
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any DNA ligation that is involved in bacterial-type DNA replication.","definition_xrefs":["GOC:TermGenie","GOC:mtg_cell_cycle"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell cycle DNA replication DNA ligation","termid":"GO:1902291"},{"relation_name":"part_of","term_name":"bacterial-type DNA replication","termid":"GO:0044787"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0007049"},{"rel_name":"part_of","termid":"GO:0006260"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0006259"},{"rel_name":"is_a","termid":"GO:0006259"}],"interesting_parent_ids":["GO:0007049","GO:0008150","GO:0006260","GO:0006259"],"is_obsolete":false,"name":"bacterial-type DNA replication DNA ligation","synonyms":[{"name":"DNA ligation involved in bacterial-type DNA replication","type":"exact"}],"termid":"GO:1902327"}


id: GO:0047103
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: H2O + NAD+ + 3-alpha,7-alpha,12-alpha-trihydroxy-5-beta-cholestan-26-al = NADH + 3-alpha,7-alpha,12-alpha-trihydroxy-5-beta-cholestanate.","definition_xrefs":["RHEA:34627","PMID:8496170"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor","termid":"GO:0016620"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016491"],"is_obsolete":false,"name":"3-alpha,7-alpha,12-alpha-trihydroxycholestan-26-al 26-oxidoreductase activity","secondary_identifiers":["MetaCyc:1.2.1.40-RXN","EC:1.14.15.15"],"synonyms":[{"name":"3-alpha,7-alpha,12-alpha-trihydroxycholestan-26-al 26-dehydrogenase activity","type":"exact"},{"name":"3alpha,7alpha,12alpha-trihydroxy-5beta-cholestan-26-al dehydrogenase activity","type":"exact"},{"name":"3alpha,7alpha,12alpha-trihydroxy-5beta-cholestan-26-al:NAD+ 26-oxidoreductase activity","type":"exact"},{"name":"3alpha,7alpha,12alpha-trihydroxycholestan-26-al 26-dehydrogenase activity","type":"exact"},{"name":"3alpha,7alpha,12alpha-trihydroxycholestan-26-al 26-oxidoreductase activity","type":"exact"},{"name":"THAL-NAD oxidoreductase activity","type":"exact"},{"name":"cholestanetriol-26-al 26-dehydrogenase activity","type":"related"},{"name":"trihydroxydeoxycoprostanal dehydrogenase activity","type":"exact"}],"termid":"GO:0047103"}


id: GO:2001131
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of a methane from a dimethyl sulfide.","definition_xrefs":["GOC:mengo_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"sulfur compound metabolic process","termid":"GO:0006790"},{"relation_name":"is_a","term_name":"methanogenesis","termid":"GO:0015948"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006790"},{"rel_name":"is_a","termid":"GO:0006091"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006790","GO:0008150","GO:0006091"],"is_obsolete":false,"name":"methane biosynthetic process from dimethyl sulfide","termid":"GO:2001131"}


id: MOD:01277
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"modification from Unimod Other -","definition_xrefs":["Unimod:253#C","PubMed:11283024"],"direct_ancestors":[{"relation_name":"is_a","term_name":"crotonaldehyde","termid":"MOD:00576"},{"relation_name":"is_a","term_name":"modified L-cysteine residue","termid":"MOD:00905"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"crotonaldehyde - site C","synonyms":[{"name":"Crotonaldehyde","type":"related"}],"termid":"MOD:01277"}


id: GO:0002588
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate, or extent of antigen processing and presentation of peptide antigen via MHC class II.","definition_xrefs":["GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of antigen processing and presentation of peptide or polysaccharide antigen via MHC class II","termid":"GO:0002582"},{"relation_name":"is_a","term_name":"positive regulation of antigen processing and presentation of peptide antigen","termid":"GO:0002585"},{"relation_name":"is_a","term_name":"regulation of antigen processing and presentation of peptide antigen via MHC class II","termid":"GO:0002586"},{"relation_name":"positively_regulates","term_name":"antigen processing and presentation of peptide antigen via MHC class II","termid":"GO:0002495"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of antigen processing and presentation of peptide antigen via MHC class II","synonyms":[{"name":"activation of antigen processing and presentation of peptide antigen via MHC class II","type":"narrow"},{"name":"positive regulation of peptide antigen processing and presentation via MHC class II","type":"exact"},{"name":"stimulation of antigen processing and presentation of peptide antigen via MHC class II","type":"narrow"},{"name":"up regulation of antigen processing and presentation of peptide antigen via MHC class II","type":"exact"},{"name":"up-regulation of antigen processing and presentation of peptide antigen via MHC class II","type":"exact"},{"name":"upregulation of antigen processing and presentation of peptide antigen via MHC class II","type":"exact"}],"termid":"GO:0002588"}


id: GO:0007284
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The mitotic divisions of the primary spermatogonial cell (a primordial male germ cell) to form secondary spermatogonia (primary spermatocytes).","definition_xrefs":["GOC:bf","ISBN:0879694238","GOC:pr"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular process involved in reproduction in multicellular organism","termid":"GO:0022412"},{"relation_name":"is_a","term_name":"cell division","termid":"GO:0051301"},{"relation_name":"part_of","term_name":"spermatogenesis","termid":"GO:0007283"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"spermatogonial cell division","synonyms":[{"name":"spermatogonium division","type":"exact"}],"termid":"GO:0007284"}


id: PBO:0058004
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 3927","termid":"PBO:0058004"}


id: FYPO:0005256
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which the observed rate of a carboxypeptidase activity is decreased.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased peptidase activity","termid":"FYPO:0000668"},{"relation_name":"is_a","term_name":"abnormal carboxypeptidase activity","termid":"FYPO:0005255"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000707"},{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0000654"},{"rel_name":"is_a","termid":"FYPO:0000661"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0000654","FYPO:0000661","FYPO:0000707","FYPO:0000652","FYPO:0001985"],"is_obsolete":false,"name":"decreased carboxypeptidase activity","synonyms":[{"name":"reduced carboxypeptidase activity","type":"exact"}],"termid":"FYPO:0005256"}


id: PBO:0071875
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RPS3A pseudogene 13","termid":"PBO:0071875"}


id: PBO:0031314
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-sensitive_to_zinc","termid":"PBO:0031314"}


id: SO:0001081
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A motif comprising two helices separated by a turn.","definition_xrefs":["EBIBS:GAR"],"direct_ancestors":[{"relation_name":"has_part","term_name":"peptide_helix","termid":"SO:0001114"},{"relation_name":"has_part","term_name":"polypeptide_turn_motif","termid":"SO:0001128"},{"relation_name":"is_a","term_name":"polypeptide_structural_motif","termid":"SO:0001079"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"SO:0000839"}],"interesting_parent_ids":["SO:0000839"],"is_obsolete":false,"name":"helix_turn_helix","secondary_identifiers":["BS:00147"],"synonyms":[{"name":"HTH","type":"related"},{"name":"helix turn helix","type":"exact"},{"name":"helix-turn-helix","type":"exact"}],"termid":"SO:0001081"}


id: PBO:0028313
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_protein_localization_to_chromatin_at_ncRNA_genes","termid":"PBO:0028313"}


id: PBO:0057105
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 196a-2","termid":"PBO:0057105"}


id: SO:0001180
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A cis-acting element found in the 3' UTR of some mRNA which is rich in AUUUA pentamers. Messenger RNAs bearing multiple AU-rich elements are often unstable.","definition_xrefs":["PMID:7892223"],"direct_ancestors":[{"relation_name":"is_a","term_name":"UTR_region","termid":"SO:0000837"},{"relation_name":"part_of","term_name":"three_prime_UTR","termid":"SO:0000205"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"AU_rich_element","secondary_identifiers":["http://en.wikipedia.org/wiki/AU-rich_element"],"synonyms":[{"name":"ARE","type":"related"},{"name":"AU rich element","type":"exact"},{"name":"AU-rich element","type":"exact"}],"termid":"SO:0001180"}


id: PBO:0085040
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Non-essential component of U5 snRNP; nuclear protein; physically interacts with Irr1p of cohesin complex; may link together proteins involved in chromosome segregation, mRNA splicing and DNA replication","termid":"PBO:0085040"}


id: GO:0015111
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Enables the transfer of iodide ions from one side of a membrane to the other.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"monoatomic anion transmembrane transporter activity","termid":"GO:0008509"},{"relation_name":"is_a","term_name":"inorganic anion transmembrane transporter activity","termid":"GO:0015103"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0022857"}],"interesting_parent_ids":["GO:0003674","GO:0022857","GO:0005215"],"is_obsolete":false,"name":"iodide transmembrane transporter activity","secondary_identifiers":["Reactome:R-HSA-5627802","Reactome:R-HSA-209910","Reactome:R-HSA-5627870"],"termid":"GO:0015111"}


id: PBO:0018121
data:
  {"annotation_feature_type":"gene","cv_name":"name_description","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Vam7-like protein","termid":"PBO:0018121"}


id: PBO:0068109
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 5S ribosomal pseudogene 416","termid":"PBO:0068109"}


id: FYPO:0006929
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A phenotype observed in the vegetative growth phase of the life cycle in which cells show increased sensitivity to silver nanoparticles. Cells stop growing (and may die) at a concentration of silver nanoparticles that allows wild type cells to grow.","definition_xrefs":["PMID:29294138","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased sensitivity to chemical during vegetative growth","termid":"FYPO:0000127"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000003"},{"rel_name":"is_a","termid":"FYPO:0002683"},{"rel_name":"is_a","termid":"FYPO:0000139"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0002683","FYPO:0000139","FYPO:0000003","FYPO:0005447"],"is_obsolete":false,"name":"sensitive to silver nanoparticles","synonyms":[{"name":"hypersensitive to silver nanoparticles","type":"exact"},{"name":"sensitive to AgNP","type":"exact"},{"name":"sensitive to silver nanoparticles during mitotic cell cycle","type":"related"},{"name":"sensitive to silver nanoparticles during vegetative growth","type":"exact"}],"termid":"FYPO:0006929"}


id: PATO:0001440
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A cellular adhesivity quality inhering in a molecule in one cell by virtue of the bearer's attachment to an identical molecule in an adjacent cell.","definition_xrefs":["GO:GO"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular adhesivity","termid":"PATO:0001531"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"homophilic","termid":"PATO:0001440"}


id: PATO:0000611
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0000611 absolute orientation value (obsolete PATO:0000611)","termid":"PATO:0000611"}


id: GO:0061387
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the extent of cell growth.","definition_xrefs":["GOC:mah","GOC:vw"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of cell growth","termid":"GO:0001558"},{"relation_name":"part_of","term_name":"regulation of cell size","termid":"GO:0008361"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of extent of cell growth","termid":"GO:0061387"}


id: PBO:0059411
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial ribosomal protein S35 pseudogene 1","termid":"PBO:0059411"}


id: SO:0000762
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","gene_count":0,"genotype_count":0,"name":"OBSOLETE SO:0000762 PAC_clone (obsolete SO:0000762)","synonyms":[{"name":"P1_clone","type":"related"}],"termid":"SO:0000762"}


id: SO:0000838
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A region of an rRNA primary transcript.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"primary_transcript_region","termid":"SO:0000835"},{"relation_name":"part_of","term_name":"rRNA_primary_transcript","termid":"SO:0000209"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"rRNA_primary_transcript_region","synonyms":[{"name":"rRNA primary transcript region","type":"exact"}],"termid":"SO:0000838"}


id: PATO:0001430
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"An medium acidity quality inhering in a solution by virtue of the bearer's a low concentration of H+ ions.","definition_xrefs":["chemicool:chemicool"],"direct_ancestors":[{"relation_name":"is_a","term_name":"medium acidity","termid":"PATO:0001428"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"alkaline","termid":"PATO:0001430"}


id: PBO:0054142
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1508","termid":"PBO:0054142"}


id: PBO:0040613
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"BAR/IMD domain containing adaptor protein 2 like 2","termid":"PBO:0040613"}


id: PBO:0070419
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RPAP3 divergent transcript","termid":"PBO:0070419"}


id: GO:0032480
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate, or extent of type I interferon production. Type I interferons include the interferon-alpha, beta, delta, episilon, zeta, kappa, tau, and omega gene families.","definition_xrefs":["GOC:add","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of cytokine production","termid":"GO:0001818"},{"relation_name":"is_a","term_name":"regulation of type I interferon production","termid":"GO:0032479"},{"relation_name":"negatively_regulates","term_name":"type I interferon production","termid":"GO:0032606"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"negatively_regulates","termid":"GO:0010467"},{"rel_name":"regulates","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0008150","GO:0010467"],"is_obsolete":false,"name":"negative regulation of type I interferon production","synonyms":[{"name":"down regulation of type I interferon production","type":"exact"},{"name":"down-regulation of type I interferon production","type":"exact"},{"name":"downregulation of type I interferon production","type":"exact"},{"name":"inhibition of type I interferon production","type":"narrow"},{"name":"negative regulation of type I IFN production","type":"exact"}],"termid":"GO:0032480"}


id: PBO:0070754
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L10 pseudogene 10","termid":"PBO:0070754"}


id: PR:Q09756
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A glucokinase that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO00185","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"hexokinase-1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC24H6.04","secondary_identifiers":["UniProtKB:Q09756"],"synonyms":[{"name":"Spom972h-GCK","type":"exact"}],"termid":"PR:Q09756"}


id: PBO:0071549
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L35a pseudogene 14","termid":"PBO:0071549"}


id: GO:0052926
data:
  {"annotated_genes":["SJAG_00334"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[86815],"is_not":false,"summary":null,"term":"GO:0052926"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: alpha-D-man-(1->2)-alpha-D-Man-(1->2)-alpha-D-Man-(1->3)-(alpha-D-Man-(1->3)-alpha-D-Man-(1->6))-beta-D-Man-(1->4)-beta-D-GlcNAc-(1->4)-D-GlcNAc-diphosphodolichol + dolichyl D-mannosyl phosphate = H+ + alpha-D-Man-(1->2)-alpha-D-Man-(1->2)-alpha-D-Man-(1->3)-(alpha-D-Man-(1->2)-alpha-D-Man-(1->3)-alpha-D-Man-(1->6))-beta-D-Man-(1->4)-beta-D-GlcNAc-(1->4)-D-GlcNAc-diphosphodolichol + dolichyl phosphate.","definition_xrefs":["RHEA:29531","EC:2.4.1.259"],"direct_ancestors":[{"relation_name":"is_a","term_name":"alpha-1,2-mannosyltransferase activity","termid":"GO:0000026"}],"gene_count":1,"genes_by_uniquename":{"SJAG_00334":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016757"},{"rel_name":"is_a","termid":"GO:0016740"}],"interesting_parent_ids":["GO:0003824","GO:0016757","GO:0003674","GO:0016740"],"is_obsolete":false,"name":"dol-P-Man:Man(6)GlcNAc(2)-PP-Dol alpha-1,2-mannosyltransferase activity","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["MetaCyc:RXN-5467","KEGG_REACTION:R06259"],"synonyms":[{"name":"dolichylphosphomannose-dependent ALG9 mannosyltransferase activity","type":"related"}],"termid":"GO:0052926","terms_by_termid":{"GO:0052926":null}}


id: PBO:0065658
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protein tyrosine phosphatase receptor type H","termid":"PBO:0065658"}


id: PBO:0004335
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cell wall biosynthesis/ cell cycle regulator (predicted)","termid":"PBO:0004335"}


id: PBO:0036105
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_histone_H3-K9_methylation_at_heterochromatin_island_during_vegetative_growth","termid":"PBO:0036105"}


id: SO:0000927
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"An edit to insert a AU dinucleotide.","definition_xrefs":["SO:ke"],"gene_count":0,"genotype_count":0,"name":"OBSOLETE SO:0000927 insert_AU (obsolete SO:0000927)","synonyms":[{"name":"insert AU","type":"exact"}],"termid":"SO:0000927"}


id: PBO:0053645
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 693","termid":"PBO:0053645"}


id: GO:2001051
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of tendon cell differentiation.","definition_xrefs":["GOC:obol"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of cell differentiation","termid":"GO:0045597"},{"relation_name":"is_a","term_name":"regulation of tendon cell differentiation","termid":"GO:2001049"},{"relation_name":"positively_regulates","term_name":"tendon cell differentiation","termid":"GO:0035990"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of tendon cell differentiation","synonyms":[{"name":"positive regulation of muscle attachment cell differentiation","type":"exact"},{"name":"positive regulation of tenocyte differentiation","type":"related"}],"termid":"GO:2001051"}


id: PBO:0050418
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"heterogeneous nuclear ribonucleoprotein D pseudogene 2","termid":"PBO:0050418"}


id: PBO:0029572
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-inviable_elongated_vegetative_cell_population_(obsolete_FYPO:0002149)","termid":"PBO:0029572"}


id: GO:0050445
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 3-mercapto-2-mercaptomethylpropanoate + NAD+ = asparagusate + H+ + NADH.","definition_xrefs":["RHEA:14881"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on a sulfur group of donors, NAD(P) as acceptor","termid":"GO:0016668"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0016491","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"asparagusate reductase activity","secondary_identifiers":["KEGG_REACTION:R03761","MetaCyc:ASPARAGUSATE-REDUCTASE-NADH-RXN","EC:1.8.1.11"],"synonyms":[{"name":"3-mercapto-2-mercaptomethylpropanoate:NAD+ oxidoreductase activity","type":"related"},{"name":"NADH2:asparagusate oxidoreductase activity","type":"related"},{"name":"NADH:asparagusate oxidoreductase activity","type":"related"},{"name":"asparagusate dehydrogenase activity","type":"related"},{"name":"asparagusate reductase (NADH) activity","type":"exact"},{"name":"asparagusate reductase (NADH2)","type":"related"},{"name":"asparagusic dehydrogenase activity","type":"related"}],"termid":"GO:0050445"}


id: PBO:0069432
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 697, pseudogene","termid":"PBO:0069432"}


id: PBO:0084835
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Mitochondrial protein that may have a role in phospholipid metabolism; inner membrane protein with similarity to Mdm32p; required for normal mitochondrial morphology and inheritance; interacts genetically with MMM1, MMM2, MDM10, MDM12, and MDM34","termid":"PBO:0084835"}


id: GO:0061573
data:
  {"annotated_genes":["SJAG_03011"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[111449],"is_not":false,"summary":null,"term":"GO:0061573"}]},"cv_name":"biological_process","definition":"A process of actin filament bundle distribution that results in the arrangement of actin filament bundles from the periphery toward the interior of the cell.","definition_xrefs":["GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"actin filament bundle distribution","termid":"GO:0070650"}],"gene_count":1,"genes_by_uniquename":{"SJAG_03011":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0007010"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0030036"}],"interesting_parent_ids":["GO:0008150","GO:0030036","GO:0007010"],"is_obsolete":false,"name":"actin filament bundle retrograde transport","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"actin filament cable retrograde transport","type":"related"}],"termid":"GO:0061573","terms_by_termid":{"GO:0061573":null}}


id: PBO:0028518
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-delayed_onset_of_protein_localization_to_mitotic_spindle","termid":"PBO:0028518"}


id: PBO:0059738
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MT-CO3 pseudogene 12","termid":"PBO:0059738"}


id: PBO:0052832
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"keratin associated protein 1-1","termid":"PBO:0052832"}


id: PBO:0004958
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PI31 proteasome regulator related","termid":"PBO:0004958"}


id: GO:0005158
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to an insulin receptor.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"signaling receptor binding","termid":"GO:0005102"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0005515"}],"interesting_parent_ids":["GO:0005515","GO:0003674","GO:0005488"],"is_obsolete":false,"name":"insulin receptor binding","synonyms":[{"name":"insulin receptor ligand","type":"narrow"}],"termid":"GO:0005158"}


id: PBO:0087003
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Rho GTPase activating protein (RhoGAP); contains RhoGAP activity specific for both Rho1p and Cdc42p, and potentially Rho4p; acts with the RhoGAP Bem3p to negatively regulate Cdc42p-dependent signal transduction; involved in the control of cytoskeleton organization and cellular morphogenesis; required for bud emergence and for the morphogenesis checkpoint in response to actin depolymerization; localizes to sites of polarized growth and the plasma membrane","termid":"PBO:0087003"}


id: GO:0018805
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: fumarate + toluene = 2-benzylsuccinate.","definition_xrefs":["EC:4.1.99.11","RHEA:10416"],"direct_ancestors":[{"relation_name":"is_a","term_name":"carbon-carbon lyase activity","termid":"GO:0016830"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016829"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016829"],"is_obsolete":false,"name":"benzylsuccinate synthase activity","secondary_identifiers":["KEGG_REACTION:R05598","MetaCyc:RXN-863","UM-BBD_enzymeID:e0259"],"synonyms":[{"name":"benzylsuccinate fumarate-lyase (toluene-forming)","type":"related"},{"name":"benzylsuccinate fumarate-lyase activity","type":"related"}],"termid":"GO:0018805"}


id: PBO:0072340
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein S26 pseudogene 26","termid":"PBO:0072340"}


id: GO:0070196
data:
  {"annotated_genes":["SJAG_02376"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[106683],"is_not":false,"summary":null,"term":"GO:0070196"}]},"cv_name":"biological_process","definition":"The aggregation, arrangement and bonding together of a set of components to form the eukaryotic translation initiation factor 3 complex.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein-containing complex assembly","termid":"GO:0065003"}],"gene_count":1,"genes_by_uniquename":{"SJAG_02376":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0044085"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0065003"}],"interesting_parent_ids":["GO:0065003","GO:0044085","GO:0008150"],"is_obsolete":false,"name":"eukaryotic translation initiation factor 3 complex assembly","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"eIF-3 assembly","type":"exact"},{"name":"eIF3 assembly","type":"exact"}],"termid":"GO:0070196","terms_by_termid":{"GO:0070196":null}}


id: GO:0071922
data:
  {"annotated_genes":["SJAG_01716","SJAG_01825","SJAG_05978","SJAG_03591","SJAG_00823"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[87404,101695,110607,101794],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1905412"},{"annotations":[102827],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1905406"}]},"cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of a process in which a cohesin complex is transported to, or maintained at, a part of a chromosome that is organized into chromatin.","definition_xrefs":["GOC:lb","PMID:17113138","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of sister chromatid cohesion","termid":"GO:0007063"},{"relation_name":"is_a","term_name":"regulation of protein localization to chromatin","termid":"GO:1905634"},{"relation_name":"regulates","term_name":"cohesin loading","termid":"GO:0071921"}],"gene_count":5,"genes_by_uniquename":{"SJAG_00823":null,"SJAG_01716":null,"SJAG_01825":null,"SJAG_03591":null,"SJAG_05978":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0007049"}],"interesting_parent_ids":["GO:0008150","GO:0007049"],"is_obsolete":false,"name":"regulation of cohesin loading","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"regulation of cohesin association with chromatin","type":"exact"},{"name":"regulation of cohesin localisation to chromatin","type":"exact"},{"name":"regulation of cohesin localization to chromatin","type":"exact"}],"termid":"GO:0071922","terms_by_termid":{"GO:1905406":null,"GO:1905412":null}}


id: PBO:0067342
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 438, pseudogene","termid":"PBO:0067342"}


id: FYPO:0004785
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of RNA measured in a cell during a cellular response to menadione is higher than normal. Total RNA or a specific RNA may be affected.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased RNA level during vegetative growth","termid":"FYPO:0000825"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"output_of","termid":"FYPO:0006551"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0006551","FYPO:0001320","FYPO:0001985","FYPO:0000002"],"is_obsolete":false,"name":"increased RNA level during cellular response to menadione","synonyms":[{"name":"increased RNA accumulation during cellular response to menadione","type":"related"},{"name":"increased RNA level during cellular response to menadione during mitotic cell cycle","type":"related"},{"name":"increased RNA level during cellular response to menadione during vegetative growth","type":"exact"},{"name":"increased mRNA level during cellular response to menadione","type":"narrow"},{"name":"increased transcript level during cellular response to menadione","type":"exact"}],"termid":"FYPO:0004785"}


id: GO:0009779
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A photosynthetic phosphorylation process in which ATP synthesis is linked to the transport of electrons from water to NADP+ with the production of NADPH and dioxygen (O2). Involves photosystem I and photosystem II.","definition_xrefs":["ISBN:0198547684"],"direct_ancestors":[{"relation_name":"is_a","term_name":"photosynthetic phosphorylation","termid":"GO:0009777"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0006091"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0006091"],"is_obsolete":false,"name":"noncyclic photosynthetic phosphorylation","termid":"GO:0009779"}


id: GO:0072507
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process involved in the maintenance of an internal steady state of divalent cations within an organism or cell.","definition_xrefs":["GOC:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete divalent inorganic cation homeostasis (obsolete GO:0072507)","termid":"GO:0072507"}


id: GO:1901264
data:
  {"annotated_genes":["SJAG_00339","SJAG_00612","SJAG_03334","SJAG_04162","SJAG_01960","SJAG_00434","SJAG_03774","SJAG_04325","SJAG_02050","SJAG_03452","SJAG_04697","SJAG_04406","SJAG_00276","SJAG_02897","SJAG_01177"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[102135],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0035348"},{"annotations":[74156],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0015866"},{"annotations":[88967],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0036085"},{"annotations":[84729],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1990570"},{"annotations":[76141,90046],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0034203"},{"annotations":[96875],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1990554"},{"annotations":[96876],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1990553"},{"annotations":[106249],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0140021"},{"annotations":[98343,106250],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1990544"},{"annotations":[70569],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1990559"},{"annotations":[88969,88738,107589],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0035436"},{"annotations":[74244,84144],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0097624"},{"annotations":[75189],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0072334"},{"annotations":[88739],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0015786"},{"annotations":[107705],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0120112"},{"annotations":[76572],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1990569"},{"annotations":[66388],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0015790"}]},"cv_name":"biological_process","definition":"The directed movement of a carbohydrate derivative into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.","definition_xrefs":["GOC:bf","GOC:jl","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"organic substance transport","termid":"GO:0071702"}],"gene_count":15,"genes_by_uniquename":{"SJAG_00276":null,"SJAG_00339":null,"SJAG_00434":null,"SJAG_00612":null,"SJAG_01177":null,"SJAG_01960":null,"SJAG_02050":null,"SJAG_02897":null,"SJAG_03334":null,"SJAG_03452":null,"SJAG_03774":null,"SJAG_04162":null,"SJAG_04325":null,"SJAG_04406":null,"SJAG_04697":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0051179","GO:0006810","GO:0008150"],"is_obsolete":false,"name":"carbohydrate derivative transport","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null,"GO_REF:0000108":null},"termid":"GO:1901264","terms_by_termid":{"GO:0015786":null,"GO:0015790":null,"GO:0015866":null,"GO:0034203":null,"GO:0035348":null,"GO:0035436":null,"GO:0036085":null,"GO:0072334":null,"GO:0097624":null,"GO:0120112":null,"GO:0140021":null,"GO:1990544":null,"GO:1990553":null,"GO:1990554":null,"GO:1990559":null,"GO:1990569":null,"GO:1990570":null}}


id: GO:0072494
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A late endosome in which regions of the limiting host cell endosomal membrane invaginate to form internal vesicles; host membrane proteins that enter the internal vesicles are sequestered from the host cytoplasm.","definition_xrefs":["GOC:rph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"host cell late endosome","termid":"GO:0044184"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"host multivesicular body","synonyms":[{"name":"host cell multivesicular body","type":"exact"}],"termid":"GO:0072494"}


id: PBO:0069315
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 573, pseudogene","termid":"PBO:0069315"}


id: PBO:0059142
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MPHOSPH10 pseudogene 9","termid":"PBO:0059142"}


id: GO:0044793
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process in which a host organism stops, prevents or reduces the frequency, rate or extent of a process being mediated by a virus with which it is infected.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"modulation by host of viral process","termid":"GO:0044788"},{"relation_name":"negatively_regulates","term_name":"viral process","termid":"GO:0016032"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation by host of viral process","termid":"GO:0044793"}


id: GO:0046879
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The regulated release of hormones, substances with a specific regulatory effect on a particular organ or group of cells.","definition_xrefs":["ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hormone transport","termid":"GO:0009914"},{"relation_name":"is_a","term_name":"signal release","termid":"GO:0023061"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"part_of","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0023052","GO:0006810","GO:0051179","GO:0008150"],"is_obsolete":false,"name":"hormone secretion","termid":"GO:0046879"}


id: GO:0039721
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A nuclear viral factory formed at the periphery of the host cell nucleus by Baculoviruses.","definition_xrefs":["VZ:1951","PMID:18434402"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nuclear viral factory","termid":"GO:0039715"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"peristromal region viral factory","synonyms":[{"name":"PR","type":"related"}],"termid":"GO:0039721"}


id: PBO:0052231
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"potassium channel tetramerization domain containing 8","termid":"PBO:0052231"}


id: GO:0033623
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate, or extent of integrin activation.","definition_xrefs":["GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of protein-containing complex assembly","termid":"GO:0043254"},{"relation_name":"regulates","term_name":"integrin activation","termid":"GO:0033622"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0065003"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0044085"}],"interesting_parent_ids":["GO:0065003","GO:0044085","GO:0008150"],"is_obsolete":false,"name":"regulation of integrin activation","synonyms":[{"name":"regulation of integrin complex activation","type":"exact"}],"termid":"GO:0033623"}


id: PBO:0026705
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_cellular_tryptophan_level","termid":"PBO:0026705"}


id: PBO:0029603
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abolished_transporter_activity","termid":"PBO:0029603"}


id: FYPO:0004646
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell cycle phenotype in which the duration of anaphase of mitosis normal (i.e. indistinguishable from wild type).","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal mitotic cell cycle phase","termid":"FYPO:0002740"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001312"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001320","FYPO:0000257","FYPO:0001312"],"is_obsolete":false,"name":"normal duration of mitotic anaphase","synonyms":[{"name":"normal duration of anaphase during mitotic cell cycle","type":"exact"},{"name":"normal duration of anaphase of mitosis","type":"related"},{"name":"normal duration of mitotic anaphase during vegetative growth","type":"exact"}],"termid":"FYPO:0004646"}


id: GO:0098572
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The side (leaflet) of the plastid thylakoid membrane that faces the stroma, and any proteins embedded in it or loosely bound to its surface.","definition_xrefs":["GOC:dos"],"direct_ancestors":[{"relation_name":"is_a","term_name":"side of membrane","termid":"GO:0098552"},{"relation_name":"part_of","term_name":"plastid thylakoid membrane","termid":"GO:0055035"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005737","GO:0005575"],"is_obsolete":false,"name":"stromal side of plastid thylakoid membrane","termid":"GO:0098572"}


id: GO:0044754
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A type of secondary lysosome in which a primary lysosome has fused with the outer membrane of an autophagosome or amphisome. It is involved in the second step of autophagy in which it degrades contents with acidic lysosomal hydrolases.","definition_xrefs":["PMID:24657946","GOC:sart","PMID:19008921","NIF_Subcellular:sao8444068431"],"direct_ancestors":[{"relation_name":"is_a","term_name":"secondary lysosome","termid":"GO:0005767"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0005773"}],"interesting_parent_ids":["GO:0005575","GO:0005773","GO:0005737"],"is_obsolete":false,"name":"autolysosome","synonyms":[{"name":"AVd","type":"exact"},{"name":"degrading autophagic vacuole","type":"exact"}],"termid":"GO:0044754"}


id: PBO:0074315
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SMAD family member 5","termid":"PBO:0074315"}


id: PBO:0074460
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sphingomyelin phosphodiesterase 4B, pseudogene","termid":"PBO:0074460"}


id: PBO:0076157
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SUGT1 pseudogene 1","termid":"PBO:0076157"}


id: PBO:0004416
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"septin Spn7","termid":"PBO:0004416"}


id: PBO:0070362
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, Ro60-associated Y5","termid":"PBO:0070362"}


id: GO:0048546
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which the anatomical structures of the digestive tract are generated and organized. The digestive tract is the anatomical structure through which food passes and is processed.","definition_xrefs":["GOC:go_curators","PMID:12618131","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"tube morphogenesis","termid":"GO:0035239"},{"relation_name":"part_of","term_name":"digestive tract development","termid":"GO:0048565"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"digestive tract morphogenesis","secondary_identifiers":["GO:0048547"],"synonyms":[{"name":"alimentary canal morphogenesis","type":"exact"},{"name":"digestive tube morphogenesis","type":"exact"},{"name":"gastrointestinal tract morphogenesis","type":"exact"},{"name":"gut morphogenesis","type":"broad"},{"name":"intestinal morphogenesis","type":"narrow"}],"termid":"GO:0048546"}


id: PBO:0070196
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U7 small nuclear 120 pseudogene","termid":"PBO:0070196"}


id: PBO:0040297
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ATP2B1 antisense RNA 1","termid":"PBO:0040297"}


id: PBO:0054626
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2031","termid":"PBO:0054626"}


id: PR:Q09127
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- rpl1001 gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q09127"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"60S ribosomal protein L10-A (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC18E5.04","synonyms":[{"name":"QM protein homolog (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"SpQM (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-rpl1001","type":"exact"}],"termid":"PR:Q09127"}


id: PBO:0092004
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"large subunit (21S) rRNA, rnl","termid":"PBO:0092004"}


id: PBO:0067988
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 5S ribosomal pseudogene 290","termid":"PBO:0067988"}


id: PBO:0028511
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_histone_H3-K9_methylation_at_heterochromatin_island","termid":"PBO:0028511"}


id: GO:0016498
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Combining with neuromedin K, the peptide Asp-Met-His-Asp-Phe-Phe-Val-Gly-Leu-Met to initiate a change in cell activity.","definition_xrefs":["GOC:mah","ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"tachykinin receptor activity","termid":"GO:0004995"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0038023"}],"interesting_parent_ids":["GO:0003674","GO:0038023"],"is_obsolete":false,"name":"neuromedin K receptor activity","synonyms":[{"name":"neurokinin B receptor activity","type":"exact"}],"termid":"GO:0016498"}


id: PBO:0014250
data:
  {"annotation_feature_type":"gene","cv_name":"disease_associated","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"diabetes","termid":"PBO:0014250"}


id: GO:0015884
data:
  {"annotated_genes":["SJAG_03503"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[73412],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1904947"}]},"cv_name":"biological_process","definition":"The directed movement of folic acid (pteroylglutamic acid) into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Folic acid is widely distributed as a member of the vitamin B complex and is essential for the synthesis of purine and pyrimidines.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"dicarboxylic acid transport","termid":"GO:0006835"},{"relation_name":"is_a","term_name":"amide transport","termid":"GO:0042886"},{"relation_name":"is_a","term_name":"vitamin transport","termid":"GO:0051180"},{"relation_name":"is_a","term_name":"modified amino acid transport","termid":"GO:0072337"}],"gene_count":1,"genes_by_uniquename":{"SJAG_03503":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0008150","GO:0051179","GO:0006810"],"is_obsolete":false,"name":"folic acid transport","references_by_uniquename":{"GO_REF:0000033":null},"synonyms":[{"name":"vitamin B9 transport","type":"exact"},{"name":"vitamin M transport","type":"exact"},{"name":"folate transport","type":"exact"}],"termid":"GO:0015884","terms_by_termid":{"GO:1904947":null}}


id: PBO:0069136
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 387, pseudogene","termid":"PBO:0069136"}


id: PBO:0110815
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"conserved fungal protein, DUF2420 family, implicated in meiotic recombination, Rmr1","termid":"PBO:0110815"}


id: GO:0034812
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 9,10-dihydroxybenzo(a)pyrene + O2 = cis-4-(8-hydroxypyren-7-yl)-2-oxobut-3-enoate.","definition_xrefs":["UM-BBD_reactionID:r1134"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen","termid":"GO:0016702"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016491","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"9,10-dihydroxybenzo(a)pyrene dioxygenase activity","secondary_identifiers":["EC:1.13.11.-"],"termid":"GO:0034812"}


id: GO:1903268
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of ornithine catabolic process.","definition_xrefs":["PMID:12679340","GOC:bhm","GO_REF:0000058","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of cellular catabolic process","termid":"GO:0031331"},{"relation_name":"is_a","term_name":"positive regulation of amino acid metabolic process","termid":"GO:0045764"},{"relation_name":"is_a","term_name":"positive regulation of small molecule metabolic process","termid":"GO:0062013"},{"relation_name":"is_a","term_name":"regulation of ornithine catabolic process","termid":"GO:1903266"},{"relation_name":"positively_regulates","term_name":"ornithine catabolic process","termid":"GO:0006593"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"positively_regulates","termid":"GO:0006520"},{"rel_name":"positively_regulates","termid":"GO:0044248"},{"rel_name":"regulates","termid":"GO:0044248"},{"rel_name":"regulates","termid":"GO:0044281"},{"rel_name":"positively_regulates","termid":"GO:0044281"},{"rel_name":"regulates","termid":"GO:0006520"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0044281","GO:0044248","GO:0008150","GO:0006520"],"is_obsolete":false,"name":"positive regulation of ornithine catabolic process","synonyms":[{"name":"activation of ornithine breakdown","type":"narrow"},{"name":"activation of ornithine catabolic process","type":"narrow"},{"name":"activation of ornithine catabolism","type":"narrow"},{"name":"activation of ornithine degradation","type":"narrow"},{"name":"positive regulation of ornithine breakdown","type":"exact"},{"name":"positive regulation of ornithine catabolism","type":"exact"},{"name":"positive regulation of ornithine degradation","type":"exact"},{"name":"up regulation of ornithine breakdown","type":"exact"},{"name":"up regulation of ornithine catabolic process","type":"exact"},{"name":"up regulation of ornithine catabolism","type":"exact"},{"name":"up regulation of ornithine degradation","type":"exact"},{"name":"up-regulation of ornithine breakdown","type":"exact"},{"name":"up-regulation of ornithine catabolic process","type":"exact"},{"name":"up-regulation of ornithine catabolism","type":"exact"},{"name":"up-regulation of ornithine degradation","type":"exact"},{"name":"upregulation of ornithine breakdown","type":"exact"},{"name":"upregulation of ornithine catabolic process","type":"exact"},{"name":"upregulation of ornithine catabolism","type":"exact"},{"name":"upregulation of ornithine degradation","type":"exact"}],"termid":"GO:1903268"}


id: PBO:0059945
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MT-ND2 pseudogene 31","termid":"PBO:0059945"}


id: GO:0055026
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of cardiac muscle tissue development.","definition_xrefs":["GOC:vk"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of striated muscle tissue development","termid":"GO:0045843"},{"relation_name":"is_a","term_name":"regulation of cardiac muscle tissue development","termid":"GO:0055024"},{"relation_name":"negatively_regulates","term_name":"cardiac muscle tissue development","termid":"GO:0048738"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of cardiac muscle tissue development","synonyms":[{"name":"down regulation of cardiac muscle development","type":"exact"},{"name":"down-regulation of cardiac muscle development","type":"exact"},{"name":"downregulation of cardiac muscle development","type":"exact"},{"name":"inhibition of cardiac muscle development","type":"narrow"},{"name":"negative regulation of heart muscle development","type":"exact"}],"termid":"GO:0055026"}


id: GO:0051827
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The increase in size or mass of an organism, or the progression of an organism from an initial condition to a later condition, occurring on or near the exterior of a second organism, where the two organisms are in a symbiotic interaction.","definition_xrefs":["GOC:cc"],"gene_count":0,"genotype_count":0,"name":"obsolete growth or development on or near surface of other organism during symbiotic interaction (obsolete GO:0051827)","synonyms":[{"name":"growth or development on or near surface of other organism during symbiotic interaction","type":"exact"}],"termid":"GO:0051827"}


id: GO:0021978
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The regionalization process that creates areas within the forebrain that will direct the behavior of cell migration in differentiation as the telencephalon develops.","definition_xrefs":["GOC:cls","GO_REF:0000021","GOC:mgi_curators","GOC:jid","GOC:dph","GOC:dgh"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regionalization","termid":"GO:0003002"},{"relation_name":"part_of","term_name":"telencephalon development","termid":"GO:0021537"},{"relation_name":"part_of","term_name":"forebrain regionalization","termid":"GO:0021871"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"telencephalon regionalization","termid":"GO:0021978"}


id: PBO:0051245
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"immunoglobulin heavy variable (II)-67-1 (pseudogene)","termid":"PBO:0051245"}


id: GO:0003006
data:
  {"annotated_genes":["SJAG_00514","SJAG_00073","SJAG_01601","SJAG_00663","SJAG_01677","SJAG_04238","SJAG_00247","SJAG_00114","SJAG_03057","SJAG_00993","SJAG_03746","SJAG_03557","SJAG_03536","SJAG_00405","SJAG_02079","SJAG_04236","SJAG_03587","SJAG_01076","SJAG_04868","SJAG_00486","SJAG_00826","SJAG_03453","SJAG_00998","SJAG_01410","SJAG_04615","SJAG_01894","SJAG_02529","SJAG_01943","SJAG_05309","SJAG_04275","SJAG_04470","SJAG_03688","SJAG_04853","SJAG_04901","SJAG_02379","SJAG_02248","SJAG_01419","SJAG_01495","SJAG_02718","SJAG_02989","SJAG_02241","SJAG_02320","SJAG_04184","SJAG_03090","SJAG_04271","SJAG_04010","SJAG_02864","SJAG_01531","SJAG_02226","SJAG_00974","SJAG_04781","SJAG_03097","SJAG_02724","SJAG_05239","SJAG_01017","SJAG_02556","SJAG_02828","SJAG_04140","SJAG_01483","SJAG_00821","SJAG_01769","SJAG_00971","SJAG_02712","SJAG_03250","SJAG_02169","SJAG_04922","SJAG_01321","SJAG_06638","SJAG_03221","SJAG_01794","SJAG_03483","SJAG_02736","SJAG_02700","SJAG_05153","SJAG_03013","SJAG_04080","SJAG_03915","SJAG_01662","SJAG_04859","SJAG_03997","SJAG_04483","SJAG_01113","SJAG_04509","SJAG_01993"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[106657],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0072316"},{"annotations":[92520,108031,96244,106856,92109,100566],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0030437"},{"annotations":[90086],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0034413"},{"annotations":[87432,83990,112996,85965,109390],"is_not":false,"rel_names":["is_a","part_of"],"summary":null,"term":"GO:0030476"},{"annotations":[104694],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0034412"},{"annotations":[104469,113006,99658],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0070591"},{"annotations":[84469],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0034217"},{"annotations":[100420,104695,87169],"is_not":false,"rel_names":["part_of","is_a"],"summary":null,"term":"GO:0031321"},{"annotations":[95425,97220,105491,109247,93163,113721,90974,93122,94383,100729,102804,114184,86967,112170,114006],"is_not":false,"rel_names":["is_a","part_of"],"summary":null,"term":"GO:0032120"},{"annotations":[95359,92455,93123,87945,102263,109248,99616,103147,95358,98408],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0031322"},{"annotations":[89656],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0072000"},{"annotations":[94676,83717,91767,112050,102068,110307,103923,84912,101506,93003,113936,105665,106178,96097],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0007534"},{"annotations":[94454,84035,88158,94533,109628,93856],"is_not":false,"rel_names":["is_a","part_of"],"summary":null,"term":"GO:1904600"},{"annotations":[114248,114249,102477],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0007531"},{"annotations":[94615],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0007533"},{"annotations":[103924,98710],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0071515"},{"annotations":[106545],"is_not":false,"rel_names":["regulates","negatively_regulates"],"summary":null,"term":"GO:0075297"},{"annotations":[97784],"is_not":false,"rel_names":["regulates","positively_regulates"],"summary":null,"term":"GO:0075296"},{"annotations":[86433],"is_not":false,"rel_names":["regulates","positively_regulates"],"summary":null,"term":"GO:1903024"},{"annotations":[83683,85591,106709,89114,86543],"is_not":false,"rel_names":["positively_regulates","regulates"],"summary":null,"term":"GO:1902917"},{"annotations":[87836],"is_not":false,"rel_names":["regulates"],"summary":null,"term":"GO:0034307"},{"annotations":[77424,88986],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0071171"},{"annotations":[95360,95638,111237,95361,90127,101452],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0070583"}]},"cv_name":"biological_process","definition":"A developmental process in which a progressive change in the state of some part of an organism, germline or somatic, specifically contributes to its ability to form offspring.","definition_xrefs":["GOC:dph","GOC:isa_complete"],"direct_ancestors":[{"relation_name":"is_a","term_name":"reproductive process","termid":"GO:0022414"},{"relation_name":"is_a","term_name":"developmental 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process involved in reproduction","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"synonyms":[{"name":"puberty","type":"narrow"},{"name":"reproductive developmental process","type":"related"}],"termid":"GO:0003006","terms_by_termid":{"GO:0007531":null,"GO:0007533":null,"GO:0007534":null,"GO:0030437":null,"GO:0030476":null,"GO:0031321":null,"GO:0031322":null,"GO:0032120":null,"GO:0034217":null,"GO:0034307":null,"GO:0034412":null,"GO:0034413":null,"GO:0070583":null,"GO:0070591":null,"GO:0071171":null,"GO:0071515":null,"GO:0072000":null,"GO:0072316":null,"GO:0075296":null,"GO:0075297":null,"GO:1902917":null,"GO:1903024":null,"GO:1904600":null}}


id: GO:0038098
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Binding to a bone morphogenetic protein (BMP) in the extracellular region, and inhibiting BMP signaling by preventing BMP from binding to its cell surface receptor.","definition_xrefs":["GOC:bf","GOC:signaling","PMID:19855014"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of BMP signaling pathway","termid":"GO:0030514"},{"relation_name":"is_a","term_name":"sequestering of extracellular ligand from receptor","termid":"GO:0035581"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"negatively_regulates","termid":"GO:0023052"},{"rel_name":"regulates","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"sequestering of BMP from receptor via BMP binding","synonyms":[{"name":"extracellular sequestering of BMP","type":"broad"},{"name":"extracellular sequestering of bone morphogenetic protein","type":"broad"}],"termid":"GO:0038098"}


id: PBO:0000600
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ATP-dependent RNA helicase Upf1","termid":"PBO:0000600"}


id: GO:0090281
data:
  {"annotated_genes":["SJAG_00296","SJAG_03631"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[86897,108681],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1905949"}]},"cv_name":"biological_process","definition":"Any process that decreases the rate, frequency, or extent of the directed movement of calcium ions into a cell or organelle.","definition_xrefs":["GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of calcium ion transport","termid":"GO:0051926"},{"relation_name":"is_a","term_name":"regulation of calcium ion import","termid":"GO:0090279"},{"relation_name":"negatively_regulates","term_name":"calcium ion import","termid":"GO:0070509"}],"gene_count":2,"genes_by_uniquename":{"SJAG_00296":null,"SJAG_03631":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"negatively_regulates","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0006810","GO:0008150"],"is_obsolete":false,"name":"negative regulation of calcium ion import","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"negative regulation of transmembrane calcium influx","type":"related"}],"termid":"GO:0090281","terms_by_termid":{"GO:1905949":null}}


id: PBO:0060097
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MT-ND5 pseudogene 44","termid":"PBO:0060097"}


id: GO:0048353
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"Nucleus resulting from the fusion of the male gamete and two polar nuclei in the central cell of the embryo sac.","definition_xrefs":["ISBN:0471245208"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nucleus","termid":"GO:0005634"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0005634"}],"interesting_parent_ids":["GO:0005575","GO:0005634"],"is_obsolete":false,"name":"primary endosperm nucleus","termid":"GO:0048353"}


id: FYPO:0001279
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of RNA measured in a cell during a cellular response to oxidative stress is higher than normal. Total RNA or a specific RNA may be affected.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased RNA level during vegetative growth","termid":"FYPO:0000825"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0006551"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0006551","FYPO:0005447","FYPO:0000002","FYPO:0001985"],"is_obsolete":false,"name":"increased RNA level during cellular response to oxidative stress","synonyms":[{"name":"increased RNA accumulation during cellular response to oxidative stress","type":"related"},{"name":"increased RNA level during cellular response to oxidative stress during mitotic cell cycle","type":"related"},{"name":"increased RNA level during cellular response to oxidative stress during vegetative growth","type":"exact"},{"name":"increased RNA level during oxidative stress response","type":"exact"},{"name":"increased mRNA level during cellular response to oxidative stress","type":"narrow"},{"name":"increased transcript level during cellular response to oxidative stress","type":"exact"}],"termid":"FYPO:0001279"}


id: GO:0070046
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A SNARE complex that contains synaptobrevin 2 (VAMP2), SNAP-25, and syntaxin 3 (or orthologs thereof).","definition_xrefs":["PMID:10336434"],"direct_ancestors":[{"relation_name":"is_a","term_name":"SNARE complex","termid":"GO:0031201"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0005737"}],"interesting_parent_ids":["GO:0005737","GO:0005575","GO:0032991"],"is_obsolete":false,"name":"synaptobrevin 2-SNAP-25-syntaxin-3 complex","synonyms":[{"name":"SNARE complex (Stx3, Snap25, Vamp2)","type":"narrow"},{"name":"Stx3-Snap25-Vamp2 complex","type":"narrow"}],"termid":"GO:0070046"}


id: GO:0000051
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The chemical reactions and pathways involving any of the intermediate compounds involved in the urea cycle, a cyclic metabolic pathway that converts waste nitrogen in the form of ammonium to urea.","definition_xrefs":["GOC:jl","ISBN:0198506732"],"gene_count":0,"genotype_count":0,"name":"obsolete urea cycle intermediate metabolic process (obsolete GO:0000051)","synonyms":[{"name":"urea cycle intermediate metabolic process","type":"exact"},{"name":"urea cycle intermediate metabolism","type":"exact"}],"termid":"GO:0000051"}


id: PBO:0005742
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"heat shock protein Ssa2 (predicted)","termid":"PBO:0005742"}


id: GO:0008724
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the ATP-independent breakage of DNA, followed by passage and rejoining. It also catalyzes the relaxation of supercoiled DNA, and the decatenation and unknotting of DNA in vivo.","definition_xrefs":["PMID:11274059","EC:5.99.1.-"],"gene_count":0,"genotype_count":0,"name":"obsolete DNA topoisomerase IV activity (obsolete GO:0008724)","synonyms":[{"name":"DNA topoisomerase IV activity","type":"exact"}],"termid":"GO:0008724"}


id: PBO:0004295
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"myosin type V","termid":"PBO:0004295"}


id: PBO:0061854
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactomedin 4","termid":"PBO:0061854"}


id: PBO:0079465
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TVP23C pseudogene 1","termid":"PBO:0079465"}


id: PBO:0057826
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 3145","termid":"PBO:0057826"}


id: PBO:0080412
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"VPS39 divergent transcript","termid":"PBO:0080412"}


id: PBO:0029222
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_malate_dehydrogenase_(decarboxylating)_(NAD+)_activity","termid":"PBO:0029222"}


id: GO:0002227
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process of the innate immune response that takes place in the mucosal tissues.","definition_xrefs":["PMID:15971105","PMID:10719665","GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mucosal immune response","termid":"GO:0002385"},{"relation_name":"is_a","term_name":"innate immune response","termid":"GO:0045087"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"innate immune response in mucosa","termid":"GO:0002227"}


id: GO:0043020
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A enzyme complex of which the core is a heterodimer composed of a light (alpha) and heavy (beta) chain, and requires several other water-soluble proteins of cytosolic origin for activity. Functions in superoxide generation by the NADPH-dependent reduction of O2.","definition_xrefs":["PMID:12440767","GOC:jl","PMID:11483596"],"direct_ancestors":[{"relation_name":"is_a","term_name":"plasma membrane protein complex","termid":"GO:0098797"},{"relation_name":"is_a","term_name":"oxidoreductase complex","termid":"GO:1990204"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005886"},{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0032991","GO:0005886","GO:0005575"],"is_obsolete":false,"name":"NADPH oxidase complex","synonyms":[{"name":"flavocytochrome b558","type":"narrow"},{"name":"respiratory-burst oxidase","type":"related"}],"termid":"GO:0043020"}


id: GO:2001174
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that stops, prevents or reduces the frequency, rate or extent of histone H2B conserved C-terminal lysine ubiquitination.","definition_xrefs":["PMID:17576814"],"gene_count":0,"genotype_count":0,"name":"obsolete negative regulation of histone H2B conserved C-terminal lysine ubiquitination (obsolete GO:2001174)","synonyms":[{"name":"negative regulation of budding yeast H2B K123 ubiquitination","type":"related"},{"name":"negative regulation of fission yeast H2B K119 ubiquitination","type":"related"},{"name":"negative regulation of mammalian H2B K120 ubiquitination","type":"related"}],"termid":"GO:2001174"}


id: PBO:0062253
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 5 subfamily BT member 1 pseudogene","termid":"PBO:0062253"}


id: GO:2001101
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The directed movement of a maltopentaoseacetate into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.","definition_xrefs":["GOC:mengo_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pentasaccharide transport","termid":"GO:2001100"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0051179"}],"interesting_parent_ids":["GO:0006810","GO:0051179","GO:0008150"],"is_obsolete":false,"name":"maltopentaose transport","termid":"GO:2001101"}


id: GO:0030370
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a receptor for intercellular adhesion molecule-3 (ICAM-3), such as DC-SIGN and LFA-1.","definition_xrefs":["PMID:11473836","GOC:ceb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"signaling receptor binding","termid":"GO:0005102"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0005515"}],"interesting_parent_ids":["GO:0005488","GO:0003674","GO:0005515"],"is_obsolete":false,"name":"intercellular adhesion molecule-3 receptor binding","synonyms":[{"name":"ICAM-3 receptor binding","type":"exact"},{"name":"ICAM-3 receptor ligand","type":"narrow"},{"name":"intercellular adhesion molecule-3 receptor ligand","type":"narrow"}],"termid":"GO:0030370"}


id: PBO:0042568
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cyclin dependent kinase inhibitor 2A","termid":"PBO:0042568"}


id: GO:0035662
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a Toll-like 4 protein, a pattern recognition receptor that binds bacterial lipopolysaccharide (LPS) to initiate an innate immune response.","definition_xrefs":["GOC:BHF","PMID:18304834"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Toll-like receptor binding","termid":"GO:0035325"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0005515"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0005515","GO:0005488"],"is_obsolete":false,"name":"Toll-like receptor 4 binding","synonyms":[{"name":"TLR4 binding","type":"exact"}],"termid":"GO:0035662"}


id: GO:0005034
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Sensing extracellular osmolarity to initiate a change in cell activity, and spanning the membrane of the cell.","definition_xrefs":["GOC:tb","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"transmembrane signaling receptor activity","termid":"GO:0004888"},{"relation_name":"is_a","term_name":"small molecule sensor activity","termid":"GO:0140299"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0140299"},{"rel_name":"is_a","termid":"GO:0038023"}],"interesting_parent_ids":["GO:0003674","GO:0038023","GO:0140299"],"is_obsolete":false,"name":"osmosensor activity","termid":"GO:0005034"}


id: GO:0120142
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of any ecdysone receptor-mediated signaling pathway.","definition_xrefs":["PMID:23072462","GOC:ha"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of intracellular steroid hormone receptor signaling pathway","termid":"GO:0033145"},{"relation_name":"is_a","term_name":"regulation of ecdysone receptor-mediated signaling pathway","termid":"GO:0120141"},{"relation_name":"positively_regulates","term_name":"ecdysone receptor-mediated signaling pathway","termid":"GO:0035076"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0023052"},{"rel_name":"positively_regulates","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"positive regulation of ecdysone receptor-mediated signaling pathway","termid":"GO:0120142"}


id: FYPO:0007454
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which occurrence of ATP binding by a gene product (usually a protein) in a mutant is decreased. The affected gene product may be encoded by the mutated gene, or by a different gene.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal ATP binding","termid":"FYPO:0003671"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000707"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000652"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000707","FYPO:0000652"],"is_obsolete":false,"name":"decreased ATP binding","synonyms":[{"name":"reduced ATP binding","type":"exact"}],"termid":"FYPO:0007454"}


id: PBO:0000443
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase family or domain","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"BRCT domain","termid":"PBO:0000443"}


id: PBO:0086346
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"P subunit of the mitochondrial glycine decarboxylase complex; glycine decarboxylase is required for the catabolism of glycine to 5,10-methylene-THF; expression is regulated by levels of 5,10-methylene-THF in the cytoplasm","termid":"PBO:0086346"}


id: PBO:0074103
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"solute carrier family 27 member 6","termid":"PBO:0074103"}


id: GO:0072466
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The series of events in which information about aspects of cell polarity control is received and converted into a molecular signal, contributing to a cell shape checkpoint.","definition_xrefs":["GOC:mah","GOC:mtg_cell_cycle"],"gene_count":0,"genotype_count":0,"name":"obsolete detection of stimulus involved in cell shape checkpoint (obsolete GO:0072466)","synonyms":[{"name":"cell shape checkpoint sensor mechanism","type":"related"},{"name":"cell shape checkpoint sensor process","type":"related"},{"name":"sensing involved in cell shape checkpoint","type":"related"}],"termid":"GO:0072466"}


id: GO:0072236
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of the metanephric loop of Henle over time, from its formation to the mature structure. The metanephric loop of Henle is a metanephric nephron tubule that connects the proximal convoluted tubule to the distal convoluted tubule in the metanephros.","definition_xrefs":["GOC:mtg_kidney_jan10"],"direct_ancestors":[{"relation_name":"is_a","term_name":"loop of Henle development","termid":"GO:0072070"},{"relation_name":"is_a","term_name":"metanephric nephron tubule development","termid":"GO:0072234"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"metanephric loop of Henle development","synonyms":[{"name":"metanephric intermediate tubule development","type":"exact"}],"termid":"GO:0072236"}


id: GO:0018036
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The formation of a C-terminal peptidyl-asparagine amide by hydrolysis and oxidation of an interior Asn-Gly peptide in a secreted protein.","definition_xrefs":["RESID:AA0083"],"gene_count":0,"genotype_count":0,"name":"obsolete C-terminal peptidyl-asparagine amidation (obsolete GO:0018036)","termid":"GO:0018036"}


id: GO:0098529
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a neuromuscular junction that targets a skeletal muscle fiber.","definition_xrefs":["GOC:mtg_OBO2OWL_2013"],"direct_ancestors":[{"relation_name":"is_a","term_name":"neuromuscular junction development","termid":"GO:0007528"},{"relation_name":"part_of","term_name":"skeletal muscle fiber development","termid":"GO:0048741"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"neuromuscular junction development, skeletal muscle fiber","termid":"GO:0098529"}


id: PBO:0079098
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-Tyr (anticodon GTA) 11-1","termid":"PBO:0079098"}


id: GO:0048834
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the number of petals formed in a flower.","definition_xrefs":["GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"specification of floral organ number","termid":"GO:0048833"},{"relation_name":"part_of","term_name":"corolla development","termid":"GO:0048465"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"specification of petal number","termid":"GO:0048834"}


id: PBO:0079078
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-iMet (anticodon CAT) 1-6","termid":"PBO:0079078"}


id: PBO:0087658
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Subunit of the HOPS and the CORVET complexes; part of the Class C Vps complex essential for membrane docking and fusion at Golgi-to-endosome and endosome-to-vacuole protein transport stages","termid":"PBO:0087658"}


id: PBO:0062614
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 10 subfamily V member 2 pseudogene","termid":"PBO:0062614"}


id: GO:1903673
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any cleavage furrow formation that is involved in mitotic cell cycle.","definition_xrefs":["GO_REF:0000060","GOC:mtg_cell_cycle","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cleavage furrow formation","termid":"GO:0036089"},{"relation_name":"is_a","term_name":"mitotic cytokinetic process","termid":"GO:1902410"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0061024"},{"rel_name":"part_of","termid":"GO:0000281"},{"rel_name":"part_of","termid":"GO:0007049"}],"interesting_parent_ids":["GO:0061024","GO:0000281","GO:0007049","GO:0008150"],"is_obsolete":false,"name":"mitotic cleavage furrow formation","synonyms":[{"name":"cleavage furrow positioning involved in mitotic cell cycle","type":"narrow"}],"termid":"GO:1903673"}


id: PBO:0029490
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-inviable_microcolony,_elongated_cells_(obsolete_FYPO:0002225)","termid":"PBO:0029490"}


id: PBO:0003156
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sulfiredoxin","termid":"PBO:0003156"}


id: PBO:0065379
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pregnancy specific beta-1-glycoprotein 7","termid":"PBO:0065379"}


id: PBO:0035964
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_number_of_Rad52_foci_during_mitotic_S_phase","termid":"PBO:0035964"}


id: GO:0008222
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. (Was not defined before being made obsolete).","definition_xrefs":["GOC:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete tumor antigen (obsolete GO:0008222)","synonyms":[{"name":"tumor antigen","type":"exact"}],"termid":"GO:0008222"}


id: PBO:0040506
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"advillin","termid":"PBO:0040506"}


id: PBO:0074338
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1","termid":"PBO:0074338"}


id: PBO:0058055
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 4276","termid":"PBO:0058055"}


id: GO:0019502
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving stachydrine, N-methylproline methylbetaine, the betaine derivative of L-proline found in alfalfa, chrysanthemum, and citrus plants.","definition_xrefs":["GOC:curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"amino-acid betaine metabolic process","termid":"GO:0006577"},{"relation_name":"is_a","term_name":"alkaloid metabolic process","termid":"GO:0009820"},{"relation_name":"is_a","term_name":"L-amino acid metabolic process","termid":"GO:0170033"},{"relation_name":"is_a","term_name":"non-proteinogenic amino acid metabolic process","termid":"GO:0170041"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0006520"}],"interesting_parent_ids":["GO:0044281","GO:0006520","GO:0008150"],"is_obsolete":false,"name":"L-proline betaine metabolic process","synonyms":[{"name":"stachydrine metabolic process","type":"exact"},{"name":"stachydrine metabolism","type":"exact"}],"termid":"GO:0019502"}


id: PBO:0042544
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cyclin dependent kinase 9","termid":"PBO:0042544"}


id: PBO:0066558
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"regulator of G protein signaling 21","termid":"PBO:0066558"}


id: PBO:0061812
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"OFD1 pseudogene 2 Y-linked","termid":"PBO:0061812"}


id: FYPO:0005718
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which the observed rate of a protein kinase activity is decreased during mitosis.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased protein kinase activity","termid":"FYPO:0001382"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000661"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000707"},{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0000654"}],"interesting_parent_ids":["FYPO:0000652","FYPO:0000654","FYPO:0000661","FYPO:0001985","FYPO:0000707"],"is_obsolete":false,"name":"decreased protein kinase activity during mitosis","synonyms":[{"name":"decreased protein kinase activity during mitotic M phase","type":"related"},{"name":"decreased protein kinase activity during mitotic M-phase","type":"related"},{"name":"reduced protein kinase activity during mitosis","type":"exact"}],"termid":"FYPO:0005718"}


id: PBO:0041909
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Cbl proto-oncogene like 1","termid":"PBO:0041909"}


id: PBO:0086680
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Putative protein of unknown function; identified by gene-trapping, microarray-based expression analysis, and genome-wide homology searching; SWAT-GFP and mCherry fusion proteins localize to the nucleus and endoplasmic reticulum respectively; YHR214C-D has a paralog, YAR069C, that arose from a segmental duplication","termid":"PBO:0086680"}


id: PBO:0110262
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mRNA cleavage factor and polyadenylation specificity factor complex RNA-binding protein Rna15","termid":"PBO:0110262"}


id: PBO:0001140
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase family or domain","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tudor domain","termid":"PBO:0001140"}


id: PBO:0069125
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 375, pseudogene","termid":"PBO:0069125"}


id: PBO:0051514
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"IKAROS family zinc finger 4","termid":"PBO:0051514"}


id: FYPO:0007062
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the occurrence of Atg1/ULK1 kinase complex assembly is decreased.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal protein complex assembly","termid":"FYPO:0000447"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0001320","FYPO:0000002","FYPO:0001985"],"is_obsolete":false,"name":"decreased Atg1/ULK1 kinase complex assembly","synonyms":[{"name":"decreased Atg1/ULK1 kinase complex assembly during mitotic cell cycle","type":"related"},{"name":"decreased Atg1/ULK1 kinase11 complex assembly during vegetative growth","type":"exact"},{"name":"reduced Atg1/ULK1 kinase complex assembly","type":"exact"}],"termid":"FYPO:0007062"}


id: PR:P78768
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- vti1 gene.","definition_xrefs":["PRO:DNx","UniProtKB:P78768"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"vesicle transport v-SNARE protein vti1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC3B9.10","synonyms":[{"name":"Spom972h-vti1","type":"exact"}],"termid":"PR:P78768"}


id: PBO:0041258
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chromosome 1 putative open reading frame 220","termid":"PBO:0041258"}


id: PBO:0075372
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SOX9 antisense RNA 1","termid":"PBO:0075372"}


id: PBO:0061596
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"neurotensin receptor 2","termid":"PBO:0061596"}


id: GO:0075035
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which specialized features of the symbiont appressorium are acquired post initiation, to aid in infection of the host. The host is defined as the larger of the organisms involved in a symbiotic interaction.","definition_xrefs":["GOC:pamgo_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"formation of structure involved in a symbiotic process","termid":"GO:0044111"},{"relation_name":"part_of","term_name":"appressorium formation","termid":"GO:0075016"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"appressorium maturation","synonyms":[{"name":"appressorium maturation on or near host","type":"exact"},{"name":"maturation of appressorium on or near host","type":"related"},{"name":"maturation of symbiont appressorium on or near host","type":"exact"}],"termid":"GO:0075035"}


id: GO:0034838
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: (-)-(2S,5R)-menthone + NAD+ = (5R)-menth-2-enone + NADH + H+.","definition_xrefs":["UM-BBD_reactionID:r1183"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor","termid":"GO:0016628"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003824","GO:0016491","GO:0003674"],"is_obsolete":false,"name":"menthone dehydrogenase activity","termid":"GO:0034838"}


id: GO:0071412
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a genistein stimulus.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to genistein","termid":"GO:0033595"},{"relation_name":"is_a","term_name":"cellular response to hydroxyisoflavone","termid":"GO:0071413"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cellular response to genistein","termid":"GO:0071412"}


id: PBO:0083130
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"D-Tyr-tRNA(Tyr) deacylase; functions in protein translation, may affect nonsense suppression via alteration of the protein synthesis machinery; ubiquitous among eukaryotes","termid":"PBO:0083130"}


id: GO:0035571
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The monomethylation of the N-terminal serine of proteins to form the derivative N-methylserine.","definition_xrefs":["PMID:20668449"],"direct_ancestors":[{"relation_name":"is_a","term_name":"N-terminal peptidyl-serine methylation","termid":"GO:0035570"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"N-terminal peptidyl-serine monomethylation","termid":"GO:0035571"}


id: PBO:0027242
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-unequal_nucleolus_inheritance","termid":"PBO:0027242"}


id: PBO:0054607
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2012","termid":"PBO:0054607"}


id: GO:0110031
data:
  {"annotated_genes":["SJAG_00364","SJAG_02771","SJAG_04280","SJAG_03854","SJAG_04287"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[70639,77330],"is_not":false,"summary":null,"term":"GO:0110031"},{"annotations":[102050,111327,87103],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0033315"}]},"cv_name":"biological_process","definition":"Any signaling pathway that decreases or inhibits the activity of a cell cycle cyclin-dependent protein kinase to modulate the switch from G2 phase to MI phase of the meiotic cell cycle.","definition_xrefs":["PMID:25492408","GOC:vw"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of G2/MI transition of meiotic cell cycle","termid":"GO:0110030"},{"relation_name":"is_a","term_name":"negative regulation of meiotic cell cycle phase transition","termid":"GO:1901994"},{"relation_name":"is_a","term_name":"negative regulation of cell cycle G2/M phase transition","termid":"GO:1902750"},{"relation_name":"negatively_regulates","term_name":"G2/MI transition of meiotic cell cycle","termid":"GO:0008315"}],"gene_count":5,"genes_by_uniquename":{"SJAG_00364":null,"SJAG_02771":null,"SJAG_03854":null,"SJAG_04280":null,"SJAG_04287":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"negatively_regulates","termid":"GO:0007049"},{"rel_name":"regulates","termid":"GO:0007049"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0007049"],"is_obsolete":false,"name":"negative regulation of G2/MI transition of meiotic cell cycle","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"termid":"GO:0110031","terms_by_termid":{"GO:0033315":null,"GO:0110031":null}}


id: GO:0034559
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: bisphenol A + NADH + H+ + O2 = 1,2-bis(4-hydroxyphenyl)-2-propanol + NAD+ + H2O.","definition_xrefs":["UM-BBD_reactionID:r0860"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen","termid":"GO:0016705"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0003674","GO:0016491","GO:0003824"],"is_obsolete":false,"name":"bisphenol A hydroxylase B activity","termid":"GO:0034559"}


id: PR:P36616
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"An SRSF protein kinase 3 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO02604","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protein kinase dsk1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC530.14c","secondary_identifiers":["UniProtKB:P36616"],"synonyms":[{"name":"Spom972h-SRPK3","type":"exact"},{"name":"dis1-suppressing protein kinase (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:P36616"}


id: PBO:0084548
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Member of the quinone oxidoreductase family; up-regulated in response to the fungicide mancozeb; possibly up-regulated by iodine","termid":"PBO:0084548"}


id: PBO:0008212
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase family or domain","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Clr5 N-terminal domain","termid":"PBO:0008212"}


id: FYPO:0004960
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of RNA measured in the mitochondria is normal (i.e. indistinguishable from wild type). Total RNA or a specific RNA may be measured.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal RNA level during vegetative growth","termid":"FYPO:0001317"},{"relation_name":"is_a","term_name":"normal level of substance in mitochondrion","termid":"FYPO:0004959"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001312"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0000257","FYPO:0001312","FYPO:0000002"],"is_obsolete":false,"name":"normal mitochondrial RNA level","synonyms":[{"name":"normal mitochondrial RNA accumulation","type":"related"},{"name":"normal mitochondrial RNA level during mitotic cell cycle","type":"related"},{"name":"normal mitochondrial RNA level during vegetative growth","type":"exact"},{"name":"normal mitochondrial transcript level","type":"exact"}],"termid":"FYPO:0004960"}


id: GO:0062145
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: ATP + L-glutamate + L-propargylglycine = ADP + H+ + L-gamma-glutamyl-L-propargylglycine + phosphate.","definition_xrefs":["RHEA:59896","PMID:30867596"],"direct_ancestors":[{"relation_name":"is_a","term_name":"acid-amino acid ligase activity","termid":"GO:0016881"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016874"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003824","GO:0016874","GO:0003674"],"is_obsolete":false,"name":"L-propargylglycine--L-glutamate ligase activity","termid":"GO:0062145"}


id: GO:0015156
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Enables the transfer of melibiose from one side of a membrane to the other. Melibiose is the disaccharide 6-O-alpha-D-galactopyranosyl-D-glucose and occurs as a constituent of the trisaccharide raffinose or in the exudates and nectaries of a number of plants.","definition_xrefs":["GOC:mtg_transport","ISBN:0198506732","ISBN:0815340729"],"direct_ancestors":[{"relation_name":"is_a","term_name":"disaccharide transmembrane transporter activity","termid":"GO:0015154"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0022857"}],"interesting_parent_ids":["GO:0022857","GO:0003674","GO:0005215"],"is_obsolete":false,"name":"melibiose transmembrane transporter activity","termid":"GO:0015156"}


id: PBO:0026725
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_proteasome_localization_to_nuclear_periphery","termid":"PBO:0026725"}


id: PBO:0062196
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 4 subfamily S member 2","termid":"PBO:0062196"}


id: FYPO:0004602
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A physical cellular phenotype in which the size, shape, or structure of all or part of the linear element is normal (i.e. indistinguishable from wild type).","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal subcellular component","termid":"FYPO:0001233"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0000257","FYPO:0000002"],"is_obsolete":false,"name":"normal linear element morphology","termid":"FYPO:0004602"}


id: PBO:0042116
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"coiled-coil domain containing 188","termid":"PBO:0042116"}


id: GO:0031943
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving glucocorticoids.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of steroid metabolic process","termid":"GO:0019218"},{"relation_name":"is_a","term_name":"regulation of cellular metabolic process","termid":"GO:0031323"},{"relation_name":"is_a","term_name":"regulation of hormone metabolic process","termid":"GO:0032350"},{"relation_name":"regulates","term_name":"glucocorticoid metabolic process","termid":"GO:0008211"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0006629"}],"interesting_parent_ids":["GO:0008150","GO:0006629"],"is_obsolete":false,"name":"regulation of glucocorticoid metabolic process","synonyms":[{"name":"regulation of glucocorticoid metabolism","type":"exact"}],"termid":"GO:0031943"}


id: MOD:00901
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that modifies an L-alanine.","definition_xrefs":["PubMed:18688235"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein modification categorized by amino acid modified","termid":"MOD:01157"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"modified L-alanine residue","synonyms":[{"name":"ModAla","type":"exact"}],"termid":"MOD:00901"}


id: FYPO:0006951
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of N(alpha),N(alpha)-dimethyl-L-histidines measured in a cell is higher than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased cellular amino acid level","termid":"FYPO:0003986"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000002","FYPO:0001320"],"is_obsolete":false,"name":"increased cellular N(alpha),N(alpha)-dimethyl-L-histidine level","synonyms":[{"name":"increased N(alpha),N(alpha)-dimethyl-L-histidine accumulation","type":"related"},{"name":"increased cellular N(alpha),N(alpha)-dimethyl-L-histidine level during mitotic cell cycle","type":"related"},{"name":"increased cellular N(alpha),N(alpha)-dimethyl-L-histidine level during vegetative growth","type":"exact"},{"name":"increased cellular dimethyl-histidine level","type":"exact"},{"name":"increased cellular dimethylhistidine level","type":"exact"}],"termid":"FYPO:0006951"}


id: PBO:0060765
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NADH:ubiquinone oxidoreductase subunit B4 pseudogene 9","termid":"PBO:0060765"}


id: SO:0000119
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"An attribute to describe a sequence that is regulated.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"gene_attribute","termid":"SO:0000401"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"regulated","termid":"SO:0000119"}


id: GO:0005206
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. (Was not defined before being made obsolete).","definition_xrefs":["GOC:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete heparin sulfate proteoglycan (obsolete GO:0005206)","synonyms":[{"name":"heparin sulfate proteoglycan","type":"exact"},{"name":"heparin sulphate proteoglycan","type":"exact"}],"termid":"GO:0005206"}


id: GO:0080013
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: all-trans-geranyl-geranyl diphosphate + H2O = (E,E)-geranyllinalool + diphosphate.","definition_xrefs":["MetaCyc:RXN-10441","PMID:18398052"],"direct_ancestors":[{"relation_name":"is_a","term_name":"carbon-oxygen lyase activity, acting on phosphates","termid":"GO:0016838"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016829"}],"interesting_parent_ids":["GO:0003824","GO:0016829","GO:0003674"],"is_obsolete":false,"name":"(E,E)-geranyllinalool synthase activity","secondary_identifiers":["RHEA:38155"],"termid":"GO:0080013"}


id: FYPO:0000990
data:
  {"alleles_by_uniquename":{"SJAG_00426:allele-1":{"allele_type":"amino_acid_mutation","description":"P363S","gene_uniquename":"SJAG_00426","name":"bbl1-P363S","uniquename":"SJAG_00426:allele-1"},"SJAG_01956:allele-1":{"allele_type":"amino_acid_mutation","description":"E405K ts","gene_uniquename":"SJAG_01956","name":"nuc2-1051","uniquename":"SJAG_01956:allele-1"},"SJAG_02621:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_02621","name":"ago1delta","uniquename":"SJAG_02621:allele-1"},"SJAG_03118:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_03118","name":"leo1delta","uniquename":"SJAG_03118:allele-1"},"SJAG_03351:allele-1":{"allele_type":"amino_acid_mutation","description":"A186T ts","gene_uniquename":"SJAG_03351","name":"cut23-415","uniquename":"SJAG_03351:allele-1"},"SJAG_03575:allele-1":{"allele_type":"amino_acid_mutation","description":"E548K ts","gene_uniquename":"SJAG_03575","name":"apc2-361","uniquename":"SJAG_03575:allele-1"},"SJAG_03689:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_03689","name":"dcr1delta","uniquename":"SJAG_03689:allele-1"}},"annotation_feature_type":"genotype","cv_annotations":{"multi_locus_phenotype":[{"annotations":[114331,114329],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0004982"},{"annotations":[114330,114332],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0004573"}],"single_locus_phenotype":[{"annotations":[114680],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0004695"},{"annotations":[114679],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0002227"},{"annotations":[114317],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0004982"},{"annotations":[114524,114525,114523],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0001327"},{"annotations":[114316],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0004574"}]},"cv_name":"fission_yeast_phenotype","definition":"A cell phenotype in which the amount of a specific substance measured in a cell is higher than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"altered level of substance in cell","termid":"FYPO:0000989"}],"gene_count":7,"genes_by_uniquename":{"SJAG_00426":null,"SJAG_01956":null,"SJAG_02621":null,"SJAG_03118":null,"SJAG_03198":null,"SJAG_03351":null,"SJAG_03575":null,"SJAG_03689":null},"genotype_count":7,"genotypes_by_uniquename":{"ago1delta__leo1delta":{"display_name":"ago1delta leo1delta","display_uniquename":"ago1delta__leo1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_02621:allele-1","expression":"Null"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_03118:allele-1","expression":"Null"}]}]},"apc2-361-E548K_ts-amino_acid_mutation-expression-not_assayed_or_wild_type":{"display_name":"apc2-361(E548K ts)","display_uniquename":"apc2-361-E548K_ts-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03575:allele-1","expression":"Not assayed or wild type"}]}]},"bbl1-P363S-P363S-amino_acid_mutation-expression-not_assayed_or_wild_type":{"display_name":"bbl1-P363S(aa)","display_uniquename":"bbl1-P363S-P363S-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_00426:allele-1","expression":"Not assayed or wild type"}]}]},"cut23-415-A186T_ts-amino_acid_mutation-expression-not_assayed_or_wild_type":{"display_name":"cut23-415(A186T ts)","display_uniquename":"cut23-415-A186T_ts-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03351:allele-1","expression":"Not assayed or wild type"}]}]},"dcr1delta":{"display_name":"dcr1delta","display_uniquename":"dcr1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03689:allele-1","expression":"Null"}]}]},"dcr1delta__leo1delta":{"display_name":"dcr1delta leo1delta","display_uniquename":"dcr1delta__leo1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03689:allele-1","expression":"Null"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_03118:allele-1","expression":"Null"}]}]},"nuc2-1051-E405K_ts-amino_acid_mutation-expression-not_assayed_or_wild_type":{"display_name":"nuc2-1051(E405K ts)","display_uniquename":"nuc2-1051-E405K_ts-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01956:allele-1","expression":"Not assayed or wild type"}]}]}},"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000002"],"is_obsolete":false,"multi_locus_annotated_genes":["SJAG_03118","SJAG_02621","SJAG_03689"],"name":"increased level of substance in cell","references_by_uniquename":{"PMID:23786411":null,"PMID:25318672":null,"PMID:35226668":null},"single_locus_annotated_genes":["SJAG_01956","SJAG_03351","SJAG_03575","SJAG_03689","SJAG_00426"],"single_locus_genotype_uniquenames":["cut23-415-A186T_ts-amino_acid_mutation-expression-not_assayed_or_wild_type","bbl1-P363S-P363S-amino_acid_mutation-expression-not_assayed_or_wild_type","apc2-361-E548K_ts-amino_acid_mutation-expression-not_assayed_or_wild_type","nuc2-1051-E405K_ts-amino_acid_mutation-expression-not_assayed_or_wild_type","dcr1delta"],"synonyms":[{"name":"increased accumulation of substance in cell","type":"related"}],"termid":"FYPO:0000990","terms_by_termid":{"FYECO:0000004":null,"FYECO:0000005":null,"FYECO:0000006":null,"FYECO:0000137":null,"FYECO:0000162":null,"FYPO:0001327":null,"FYPO:0002227":null,"FYPO:0004573":null,"FYPO:0004574":null,"FYPO:0004695":null,"FYPO:0004982":null}}


id: PBO:0032760
data:
  {"annotation_feature_type":"gene","cv_name":"warning","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"previously thought to function in initiation","termid":"PBO:0032760"}


id: PBO:0091068
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Ermes regulator Emr1","termid":"PBO:0091068"}


id: PBO:0074989
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nucleolar RNA, C/D box 114-31","termid":"PBO:0074989"}


id: GO:0048772
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which a relatively unspecialized cell acquires the specialized features of a leucophore cell. Leucophores are pigment cells derived from the neural crest. They contain uric acid or other purine crystals, deposited in stacks called leucosomes. This gives them a white appearance.","definition_xrefs":["GOC:mh","GOC:jid"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pigment cell differentiation","termid":"GO:0050931"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"leucophore differentiation","synonyms":[{"name":"leucophore cell differentiation","type":"exact"}],"termid":"GO:0048772"}


id: GO:0006377
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. (Was not defined before being made obsolete).","definition_xrefs":["GOC:krc"],"gene_count":0,"genotype_count":0,"name":"obsolete MATa1 (A1) pre-mRNA splicing (obsolete GO:0006377)","synonyms":[{"name":"MATa1 (A1) pre-mRNA splicing","type":"exact"}],"termid":"GO:0006377"}


id: SO:0001416
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A flanking region located five prime of a specific region.","definition_xrefs":["SO:chado"],"direct_ancestors":[{"relation_name":"is_a","term_name":"flanking_region","termid":"SO:0000239"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"five_prime_flanking_region","synonyms":[{"name":"5' flanking region","type":"related"},{"name":"five prime flanking region","type":"exact"}],"termid":"SO:0001416"}


id: PBO:0058318
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 4691","termid":"PBO:0058318"}


id: PBO:0039838
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Rho GTPase activating protein 8","termid":"PBO:0039838"}


id: PBO:0046525
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"endoplasmic reticulum to nucleus signaling 2","termid":"PBO:0046525"}


id: MOD:01928
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively crosslinks either an L-asparagine residue or an L-aspartic acid residue with a glycine residue by an isopeptide bond with formation of N-(L-isoaspartyl)glycine.","definition_xrefs":["ChEBI:21479","PubMed:1826288","RESID:AA0126"],"direct_ancestors":[{"relation_name":"is_a","term_name":"isopeptide crosslinked residues","termid":"MOD:00688"},{"relation_name":"is_a","term_name":"crosslinked glycine residue","termid":"MOD:02047"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"N-(L-isoaspartyl)-glycine","synonyms":[{"name":"(2S)-2-amino-4-(carboxymethyl)amino-4-oxobutanoic acid","type":"exact"},{"name":"2-amino-N4-(carboxymethyl)-butanediamic acid","type":"exact"},{"name":"N-(L-isoaspartyl)-glycine","type":"exact"},{"name":"N-beta-aspartylglycine","type":"exact"},{"name":"N4-(carboxymethyl)-asparagine","type":"exact"},{"name":"XLNK-4Asp-NGly","type":"exact"},{"name":"isoaspartyl glycine","type":"exact"}],"termid":"MOD:01928"}


id: GO:0050211
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: UDP-galactose + procollagen 5-hydroxy-L-lysine = UDP + procollagen 5-(D-galactosyloxy)-L-lysine.","definition_xrefs":["MetaCyc:PROCOLLAGEN-GALACTOSYLTRANSFERASE-RXN","EC:2.4.1.50"],"direct_ancestors":[{"relation_name":"is_a","term_name":"UDP-galactosyltransferase activity","termid":"GO:0035250"},{"relation_name":"is_a","term_name":"catalytic activity, acting on a protein","termid":"GO:0140096"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0140096"},{"rel_name":"is_a","termid":"GO:0016757"},{"rel_name":"is_a","termid":"GO:0016740"}],"interesting_parent_ids":["GO:0016740","GO:0003674","GO:0003824","GO:0140096","GO:0016757"],"is_obsolete":false,"name":"procollagen galactosyltransferase activity","secondary_identifiers":["Reactome:R-HSA-1981120","RHEA:12637","Reactome:R-HSA-1981128"],"synonyms":[{"name":"UDP galactose-collagen galactosyltransferase activity","type":"related"},{"name":"UDP-galactose:procollagen-5-hydroxy-L-lysine D-galactosyltransferase activity","type":"related"},{"name":"UDPgalactose:5-hydroxylysine-collagen galactosyltransferase activity","type":"related"},{"name":"UDPgalactose:procollagen-5-hydroxy-L-lysine D-galactosyltransferase activity","type":"related"},{"name":"collagen galactosyltransferase activity","type":"related"},{"name":"collagen hydroxylysyl galactosyltransferase activity","type":"related"},{"name":"hydroxylysine galactosyltransferase activity","type":"related"},{"name":"uridine diphosphogalactose-collagen galactosyltransferase activity","type":"related"}],"termid":"GO:0050211"}


