# terms

id: PR:Q9USK8
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- ags1 gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q9USK8"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cell wall alpha-1,3-glucan synthase ags1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC1281.01","synonyms":[{"name":"Spom972h-ags1","type":"exact"},{"name":"cell wall alpha-1,4-glucan synthase (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:Q9USK8"}


id: PBO:0072398
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein S27 pseudogene 3","termid":"PBO:0072398"}


id: PBO:0053494
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 472","termid":"PBO:0053494"}


id: PBO:0079691
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ubiquitin like 4B","termid":"PBO:0079691"}


id: GO:0072157
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The orderly movement of epithelial cells within a renal tubule that contributes to distal tubule morphogenesis.","definition_xrefs":["GOC:mtg_kidney_jan10"],"direct_ancestors":[{"relation_name":"is_a","term_name":"epithelial cell migration involved in nephron tubule morphogenesis","termid":"GO:0072155"},{"relation_name":"part_of","term_name":"distal tubule morphogenesis","termid":"GO:0072156"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"epithelial cell migration involved in distal tubule morphogenesis","termid":"GO:0072157"}


id: PBO:0042495
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cadherin 15","termid":"PBO:0042495"}


id: MOD:01245
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-aspartic acid residue to the potassium aspartate salt.","definition_xrefs":["Unimod:530#D"],"direct_ancestors":[{"relation_name":"is_a","term_name":"modified L-aspartic acid residue","termid":"MOD:00904"},{"relation_name":"is_a","term_name":"monopotassium salt","termid":"MOD:01072"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"potassium L-aspartate","synonyms":[{"name":"Cation:K","type":"related"},{"name":"Replacement of proton by potassium","type":"related"}],"termid":"MOD:01245"}


id: FYPO:0000785
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A phenotype observed in the vegetative growth phase of the life cycle in which cells show increased sensitivity to formamide. Cells stop growing (and may die) at a concentration of formamide that allows wild type cells to grow.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased sensitivity to chemical during vegetative growth","termid":"FYPO:0000127"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000139"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000003"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0002683"}],"interesting_parent_ids":["FYPO:0000139","FYPO:0005447","FYPO:0002683","FYPO:0000003","FYPO:0001985"],"is_obsolete":false,"name":"sensitive to formamide","synonyms":[{"name":"hypersensitive to formamide","type":"exact"},{"name":"sensitive to formamide during mitotic cell cycle","type":"related"},{"name":"sensitive to formamide during vegetative growth","type":"exact"}],"termid":"FYPO:0000785"}


id: GO:0010207
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The aggregation, arrangement and bonding together of a set of components to form a photosystem II complex on the thylakoid membrane. The photosystem II complex consists of at least 20 polypeptides and around 80 cofactors in most organisms.","definition_xrefs":["GOC:aa","GOC:pz"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein-containing complex assembly","termid":"GO:0065003"},{"relation_name":"part_of","term_name":"photosynthesis, light reaction","termid":"GO:0019684"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0065003"},{"rel_name":"part_of","termid":"GO:0044085"},{"rel_name":"part_of","termid":"GO:0006091"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0006091","GO:0065003","GO:0044085"],"is_obsolete":false,"name":"photosystem II assembly","termid":"GO:0010207"}


id: PBO:0058352
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 4725","termid":"PBO:0058352"}


id: GO:1902283
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of primary amine oxidase activity.","definition_xrefs":["PMID:23349812","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of oxidoreductase activity","termid":"GO:0051354"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of primary amine oxidase activity","synonyms":[{"name":"down regulation of amine oxidase (copper-containing) activity","type":"narrow"},{"name":"down regulation of primary amine oxidase activity","type":"exact"},{"name":"down regulation of primary-amine:oxygen oxidoreductase (deaminating) activity","type":"exact"},{"name":"down-regulation of amine oxidase (copper-containing) activity","type":"narrow"},{"name":"down-regulation of primary amine oxidase activity","type":"exact"},{"name":"down-regulation of primary-amine:oxygen oxidoreductase (deaminating) activity","type":"exact"},{"name":"downregulation of amine oxidase (copper-containing) activity","type":"narrow"},{"name":"downregulation of primary amine oxidase activity","type":"exact"},{"name":"downregulation of primary-amine:oxygen oxidoreductase (deaminating) activity","type":"exact"},{"name":"inhibition of amine oxidase (copper-containing) activity","type":"narrow"},{"name":"inhibition of primary amine oxidase activity","type":"narrow"},{"name":"inhibition of primary-amine:oxygen oxidoreductase (deaminating) activity","type":"narrow"},{"name":"negative regulation of amine oxidase (copper-containing) activity","type":"narrow"},{"name":"negative regulation of primary-amine:oxygen oxidoreductase (deaminating) activity","type":"exact"}],"termid":"GO:1902283"}


id: PBO:0072010
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein S7 pseudogene 12","termid":"PBO:0072010"}


id: PBO:0073101
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"succinate dehydrogenase complex subunit D pseudogene 5","termid":"PBO:0073101"}


id: GO:0060759
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the rate, frequency, or extent of a response to cytokine stimulus.","definition_xrefs":["GOC:BHF","GOC:tb","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of response to stimulus","termid":"GO:0048583"},{"relation_name":"regulates","term_name":"response to cytokine","termid":"GO:0034097"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of response to cytokine stimulus","termid":"GO:0060759"}


id: GO:0042179
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of nicotine, (S)(-)-3-(1-methyl-2-pyrrolidinyl)pyridine.","definition_xrefs":["ISBN:0198547684","GOC:sm"],"direct_ancestors":[{"relation_name":"is_a","term_name":"biosynthetic process","termid":"GO:0009058"},{"relation_name":"is_a","term_name":"nicotine metabolic process","termid":"GO:0018933"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"nicotine biosynthetic process","synonyms":[{"name":"nicotine formation","type":"exact"},{"name":"nicotine synthesis","type":"exact"},{"name":"nicotine anabolism","type":"exact"},{"name":"nicotine biosynthesis","type":"exact"}],"termid":"GO:0042179"}


id: PBO:0090349
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pig-X, glycosylphosphatidylinositol-mannosyltransferase I complex subunit","termid":"PBO:0090349"}


id: PBO:0084886
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Mitochondrial thioredoxin; highly conserved oxidoreductase required to maintain the redox homeostasis of the cell, forms the mitochondrial thioredoxin system with Trr2p, redox state is maintained by both Trr2p and Glr1p","termid":"PBO:0084886"}


id: PBO:0051799
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"IQ motif containing GTPase activating protein 1","termid":"PBO:0051799"}


id: FYPO:0007138
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell morphology phenotype in which a vegetative cell is inviable, has an abnormally low volume, and contains more than one septum.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"has_part","term_name":"multiseptate vegetative cell","termid":"FYPO:0000118"},{"relation_name":"is_a","term_name":"multiseptate vegetative cell","termid":"FYPO:0000118"},{"relation_name":"is_a","term_name":"inviable small vegetative cell","termid":"FYPO:0000951"},{"relation_name":"is_a","term_name":"inviable septated vegetative cell with abnormal cell morphology","termid":"FYPO:0002452"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000004"},{"rel_name":"has_part","termid":"FYPO:0000004"},{"rel_name":"output_of","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"has_part","termid":"FYPO:0001985"},{"rel_name":"has_part","termid":"FYPO:0001320"},{"rel_name":"has_part","termid":"FYPO:0000005"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0000032"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000005"},{"rel_name":"output_of","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0000005","FYPO:0000631","FYPO:0000004","FYPO:0000002","FYPO:0005447","FYPO:0000032","FYPO:0001985"],"is_obsolete":false,"name":"inviable small multiseptate vegetative cell","synonyms":[{"name":"inviable small multiseptate vegetative cell during mitotic cell cycle","type":"related"},{"name":"lethal; small multiseptate vegetative cell","type":"exact"},{"name":"small inviable multiseptate cell during vegetative growth","type":"exact"},{"name":"small multiseptate inviable vegetative cell","type":"exact"}],"termid":"FYPO:0007138"}


id: PBO:0045497
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DSG1 antisense RNA 1","termid":"PBO:0045497"}


id: PBO:0061510
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NSA2 ribosome biogenesis factor","termid":"PBO:0061510"}


id: GO:0071329
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a sucrose stimulus.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to sucrose","termid":"GO:0009744"},{"relation_name":"is_a","term_name":"cellular response to disaccharide stimulus","termid":"GO:0071324"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cellular response to sucrose stimulus","termid":"GO:0071329"}


id: PBO:0060381
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"myosin VIIA and Rab interacting protein","termid":"PBO:0060381"}


id: PBO:0083277
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Dubious open reading frame; unlikely to encode a functional protein, based on available experimental and comparative sequence data; not conserved in closely related Saccharomyces species; deletion mutation enhances replication of Brome mosaic virus in S. cerevisiae, but this is likely due to effects on the overlapping gene ELP4","termid":"PBO:0083277"}


id: SO:0001875
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A supercontig that is not been assigned to any ultracontig during a genome assembly project.","definition_xrefs":["GMOD:ea"],"direct_ancestors":[{"relation_name":"is_a","term_name":"supercontig","termid":"SO:0000148"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"unassigned_supercontig","synonyms":[{"name":"unassigned scaffold","type":"related"},{"name":"unassigned supercontig","type":"exact"}],"termid":"SO:0001875"}


id: PBO:0004763
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DNA-directed RNA polymerase I complex subunit Rpa43","termid":"PBO:0004763"}


id: PBO:0090348
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"calcium/calmodulin-dependent (CaMKK) protein kinase kinase Ckk2/Ppk34","termid":"PBO:0090348"}


id: GO:1990149
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The addition of COPI proteins and adaptor proteins to ER membranes during the formation of transport vesicles, forming a vesicle coat.","definition_xrefs":["PMID:11970962","GOC:rb"],"gene_count":0,"genotype_count":0,"name":"obsolete COPI vesicle coating (obsolete GO:1990149)","synonyms":[{"name":"COPI vesicle coating","type":"exact"}],"termid":"GO:1990149"}


id: PBO:0070650
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L7 pseudogene 21","termid":"PBO:0070650"}


id: PBO:0043232
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chloride voltage-gated channel 3 pseudogene 1","termid":"PBO:0043232"}


id: GO:0035651
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to an AP-3 adaptor complex. The AP-3 adaptor complex is a heterotetrameric AP-type membrane coat adaptor complex that consists of beta3, delta, mu3 and sigma3 subunits and is found associated with endosomal membranes. In at least humans, the AP-3 complex can be heterogeneric due to the existence of multiple subunit isoforms encoded by different genes (beta3A and beta3B, mu3A and mu3B, and sigma3A and sigma3B).","definition_xrefs":["PMID:21097499"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein-containing complex binding","termid":"GO:0044877"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005488"}],"interesting_parent_ids":["GO:0005488","GO:0003674"],"is_obsolete":false,"name":"AP-3 adaptor complex binding","termid":"GO:0035651"}


id: PBO:0012520
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-has_output_o_product_of","termid":"PBO:0012520"}


id: GO:0044682
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: GTP + H2O = 7,8-dihydroneopterin 2',3'-cyclic phosphate + diphosphate + formate + H+. This activity is part of the biosynthesis of methanopterin in Archaea, and requires Fe2+.","definition_xrefs":["GOC:mengo_curators","RHEA:25860","PMID:17497938"],"direct_ancestors":[{"relation_name":"is_a","term_name":"GTP cyclohydrolase activity","termid":"GO:0003933"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016810"},{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0016810","GO:0003824","GO:0016787"],"is_obsolete":false,"name":"GTP cyclohydrolase IV activity","secondary_identifiers":["EC:3.5.4.39"],"synonyms":[{"name":"Fe(2+)-dependent archaeal-specific GTP cyclohydrolase activity","type":"exact"},{"name":"MptA activity","type":"narrow"},{"name":"archaeal-specific GTP cyclohydrolase activity","type":"exact"}],"termid":"GO:0044682"}


id: GO:0004129
data:
  {"annotated_genes":["SJAG_MIT20","SJAG_00976","SJAG_05629","SJAG_01077","SJAG_MIT04","SJAG_MIT13","SJAG_01190","SJAG_01355","SJAG_02504","SJAG_07007","SJAG_03337"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[83977,84968,87616,103695,109532,109950,110720,112068,114198,114219,114243],"is_not":false,"summary":null,"term":"GO:0004129"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: 4 ferrocytochrome c + O2 + 4 H+ = 4 ferricytochrome c + 2 H2O.","definition_xrefs":["RHEA:11436"],"direct_ancestors":[{"relation_name":"is_a","term_name":"electron transfer activity","termid":"GO:0009055"},{"relation_name":"is_a","term_name":"proton transmembrane transporter activity","termid":"GO:0015078"},{"relation_name":"is_a","term_name":"oxidoreduction-driven active transmembrane transporter activity","termid":"GO:0015453"},{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on a heme group of donors","termid":"GO:0016675"},{"relation_name":"is_a","term_name":"active monoatomic ion transmembrane transporter activity","termid":"GO:0022853"}],"gene_count":11,"genes_by_uniquename":{"SJAG_00976":null,"SJAG_01077":null,"SJAG_01190":null,"SJAG_01355":null,"SJAG_02504":null,"SJAG_03337":null,"SJAG_05629":null,"SJAG_07007":null,"SJAG_MIT04":null,"SJAG_MIT13":null,"SJAG_MIT20":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0022857","GO:0005215","GO:0016491"],"is_obsolete":false,"name":"cytochrome-c oxidase activity","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["Reactome:R-HSA-163214","MetaCyc:CYTOCHROME-C-OXIDASE-RXN","EC:7.1.1.9"],"synonyms":[{"name":"Warburg's respiratory enzyme activity","type":"related"},{"name":"aa3-type cytochrome c oxidase","type":"narrow"},{"name":"ba3-type cytochrome c oxidase","type":"narrow"},{"name":"caa3-type cytochrome c oxidase","type":"narrow"},{"name":"cbb3-type cytochrome c oxidase","type":"narrow"},{"name":"complex IV (mitochondrial electron transport) activity","type":"related"},{"name":"cytochrome a3 activity","type":"narrow"},{"name":"cytochrome aa3 activity","type":"narrow"},{"name":"cytochrome c oxidase activity","type":"exact"},{"name":"cytochrome oxidase activity","type":"related"},{"name":"indophenol oxidase","type":"narrow"},{"name":"indophenolase","type":"narrow"}],"termid":"GO:0004129","terms_by_termid":{"GO:0004129":null}}


id: PBO:0076047
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"stathmin 1 pseudogene 2","termid":"PBO:0076047"}


id: GO:0002232
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The movement of an immune cell in response to an external stimulus contributing to an inflammatory response.","definition_xrefs":["ISBN:0781735149","GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"leukocyte migration involved in inflammatory response","termid":"GO:0002523"},{"relation_name":"is_a","term_name":"leukocyte chemotaxis","termid":"GO:0030595"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"leukocyte chemotaxis involved in inflammatory response","synonyms":[{"name":"immune cell chemotaxis during inflammatory response","type":"related"},{"name":"leucocyte chemotaxis during inflammatory response","type":"related"},{"name":"leukocyte chemotaxis during inflammatory response","type":"related"}],"termid":"GO:0002232"}


id: PBO:0063582
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pescadillo ribosomal biogenesis factor 1 pseudogene 2","termid":"PBO:0063582"}


id: GO:0140991
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A cytoplasmic post-transcriptional gene silencing pathway in which piRNAs direct the cleavage of target mRNAs. The target mRNA, often transcribed from a transposable element, is destabilized by the activity of a PIWI class endonuclease within the piRNA-induced silencing complex. This may also be accompanied by mRNA deadenylation and decapping.","definition_xrefs":["PMID:33419460","PMID:29281264"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulatory ncRNA-mediated post-transcriptional gene silencing","termid":"GO:0035194"},{"relation_name":"is_a","term_name":"mRNA destabilization","termid":"GO:0061157"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0044248"},{"rel_name":"positively_regulates","termid":"GO:0016071"},{"rel_name":"regulates","termid":"GO:0016071"},{"rel_name":"regulates","termid":"GO:0010467"},{"rel_name":"negatively_regulates","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"positively_regulates","termid":"GO:0044248"}],"interesting_parent_ids":["GO:0016071","GO:0008150","GO:0010467","GO:0044248"],"is_obsolete":false,"name":"piRNA-mediated gene silencing by mRNA destabilization","termid":"GO:0140991"}


id: GO:0001778
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The resealing of a cell plasma membrane after cellular wounding due to, for instance, mechanical stress.","definition_xrefs":["PMID:12925704","GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"plasma membrane organization","termid":"GO:0007009"},{"relation_name":"part_of","term_name":"wound healing","termid":"GO:0042060"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0061024"}],"interesting_parent_ids":["GO:0008150","GO:0061024"],"is_obsolete":false,"name":"plasma membrane repair","termid":"GO:0001778"}


id: PBO:0026929
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_protein_level_in_anaphase-promoting_complex","termid":"PBO:0026929"}


id: PBO:0017792
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cation diffusion family zinc transmembrane transporter Cis4","termid":"PBO:0017792"}


id: PBO:0015233
data:
  {"annotation_feature_type":"gene","cv_name":"disease_associated","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"colorectal cancer","termid":"PBO:0015233"}


id: PBO:0079218
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"thiosulfate sulfurtransferase like domain containing 3","termid":"PBO:0079218"}


id: PBO:0048512
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"GDP dissociation inhibitor 1","termid":"PBO:0048512"}


id: GO:0003054
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which the suprachiasmatic nucleus modulates blood pressure at different values with a regularity of approximately 24 hours.","definition_xrefs":["GOC:mtg_cardio","GOC:rl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nervous system process involved in regulation of systemic arterial blood pressure","termid":"GO:0001976"},{"relation_name":"is_a","term_name":"circadian regulation of systemic arterial blood pressure","termid":"GO:0003052"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"circadian regulation of systemic arterial blood pressure by the suprachiasmatic nucleus","synonyms":[{"name":"SCN regulation of blood pressure","type":"exact"},{"name":"master pacemaker clock regulation of blood pressure","type":"exact"}],"termid":"GO:0003054"}


id: PBO:0090731
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"GATOR2-SEACAT complex WD repeat subunit Sea2","termid":"PBO:0090731"}


id: FYPO:0005842
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to a cytoplasmic microtubule is normal (i.e. indistinguishable from wild type) during interphase of the mitotic cell cycle.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal protein localization to microtubule cytoskeleton during mitotic interphase","termid":"FYPO:0003185"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0001312"}],"interesting_parent_ids":["FYPO:0001312","FYPO:0000257","FYPO:0001320","FYPO:0000002","FYPO:0000138"],"is_obsolete":false,"name":"normal protein localization to interphase microtubule","secondary_identifiers":["FYPO:0005856"],"synonyms":[{"name":"normal protein localisation to cytoplasmic microtubule during mitotic interphase","type":"exact"},{"name":"normal protein localisation to interphase microtubule","type":"exact"},{"name":"normal protein localization to cytoplasmic microtubule during interphase during vegetative growth","type":"exact"},{"name":"normal protein localization to cytoplasmic microtubule during interphase of mitotic cell cycle","type":"exact"},{"name":"normal protein localization to cytoplasmic microtubule during mitotic interphase","type":"exact"},{"name":"normal protein localization to interphase cytoplasmic microtubule","type":"exact"},{"name":"normal protein localization to interphase microtubule during mitotic cell cycle","type":"related"},{"name":"normal protein localization to interphase microtubule during vegetative growth","type":"exact"}],"termid":"FYPO:0005842"}


id: PBO:0070694
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L8 pseudogene 3","termid":"PBO:0070694"}


id: PBO:0080315
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"vomeronasal 1 receptor 79 pseudogene","termid":"PBO:0080315"}


id: GO:0002277
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The change in morphology and behavior of a myeloid dendritic cell resulting from exposure to a cytokine, chemokine, cellular ligand, or soluble factor, leading to the initiation or perpetuation of an immune response.","definition_xrefs":["GOC:add","ISBN:0781735149"],"direct_ancestors":[{"relation_name":"is_a","term_name":"myeloid dendritic cell activation","termid":"GO:0001773"},{"relation_name":"is_a","term_name":"myeloid cell activation involved in immune response","termid":"GO:0002275"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"myeloid dendritic cell activation involved in immune response","synonyms":[{"name":"myeloid dendritic cell activation during immune response","type":"related"}],"termid":"GO:0002277"}


id: GO:1903570
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that modulates the frequency, rate or extent of protein kinase D signaling.","definition_xrefs":["GOC:BHF","GO_REF:0000058","GOC:TermGenie","PMID:20497126","GOC:rl"],"gene_count":0,"genotype_count":0,"name":"obsolete regulation of protein kinase D signaling (obsolete GO:1903570)","synonyms":[{"name":"regulation of PKD signal transduction","type":"exact"},{"name":"regulation of PKD signaling cascade","type":"related"},{"name":"regulation of protein kinase D signal transduction","type":"exact"},{"name":"regulation of protein kinase D signaling cascade","type":"related"},{"name":"regulation of protein kinase D signalling cascade","type":"related"}],"termid":"GO:1903570"}


id: GO:0031012
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A structure lying external to one or more cells, which provides structural support, biochemical or biomechanical cues for cells or tissues.","definition_xrefs":["PMID:21123617","PMID:28089324","GOC:mah","GOC:rph","GOC:BHF","NIF_Subcellular:nlx_subcell_20090513"],"direct_ancestors":[{"relation_name":"is_a","term_name":"external encapsulating structure","termid":"GO:0030312"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"extracellular matrix","secondary_identifiers":["Wikipedia:Extracellular_matrix","GO:0005578"],"synonyms":[{"name":"matrisome","type":"narrow"},{"name":"proteinaceous extracellular matrix","type":"exact"}],"termid":"GO:0031012"}


id: PBO:0088120
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Vacuolar Fe2+/Mn2+ transporter; suppresses respiratory deficit of yfh1 mutants, which lack the ortholog of mammalian frataxin, by preventing mitochondrial iron accumulation; relative distribution to the vacuole decreases upon DNA replication stress","termid":"PBO:0088120"}


id: PBO:0043661
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"coenzyme Q6, monooxygenase","termid":"PBO:0043661"}


id: PBO:0047853
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"fragile site, aphidicolin type, common, fra(1)(q21)","termid":"PBO:0047853"}


id: PBO:0051101
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"immunoglobulin heavy variable 1-8","termid":"PBO:0051101"}


id: GO:0019897
data:
  {"annotated_genes":["SJAG_03081","SJAG_02605","SJAG_02233","SJAG_04026","SJAG_04266","SJAG_02444"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[105901],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0031234"},{"annotations":[109145,101924,89846,102556,104408],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0005834"}]},"cv_name":"cellular_component","definition":"The component of a plasma membrane consisting of gene products and protein complexes that are loosely bound to one of its surfaces, but not integrated into the hydrophobic region.","definition_xrefs":["GOC:curators","GOC:dos"],"direct_ancestors":[{"relation_name":"is_a","term_name":"extrinsic component of membrane","termid":"GO:0019898"},{"relation_name":"part_of","term_name":"plasma membrane","termid":"GO:0005886"}],"gene_count":6,"genes_by_uniquename":{"SJAG_02233":null,"SJAG_02444":null,"SJAG_02605":null,"SJAG_03081":null,"SJAG_04026":null,"SJAG_04266":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005886"}],"interesting_parent_ids":["GO:0005575","GO:0005886"],"is_obsolete":false,"name":"extrinsic component of plasma membrane","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["GO:0000157"],"synonyms":[{"name":"extrinsic to plasma membrane","type":"exact"},{"name":"juxtamembrane","type":"broad"},{"name":"peripheral plasma membrane protein","type":"exact"}],"termid":"GO:0019897","terms_by_termid":{"GO:0005834":null,"GO:0031234":null}}


id: GO:1990649
data:
  {"annotated_genes":["SJAG_00063"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[103707],"is_not":false,"summary":null,"term":"GO:1990649"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: 1D-myo-inositol 1,2,4,5-tetrakisphosphate + H2O = 1D-myo-inositol 1,2,4-trisphosphate + phosphate.","definition_xrefs":["GOC:al","PMID:15316017"],"direct_ancestors":[{"relation_name":"is_a","term_name":"inositol tetrakisphosphate phosphatase activity","termid":"GO:0052743"}],"gene_count":1,"genes_by_uniquename":{"SJAG_00063":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0016788"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016787","GO:0003824","GO:0016788","GO:0003674"],"is_obsolete":false,"name":"inositol-1,2,4,5-tetrakisphosphate 5-phosphatase activity","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:1990649","terms_by_termid":{"GO:1990649":null}}


id: PBO:0046362
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ENTH domain containing 1","termid":"PBO:0046362"}


id: PBO:0060045
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MT-ND4 pseudogene 33","termid":"PBO:0060045"}


id: PBO:0088518
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ER membrane fatty acid alpha-oxygenase Mpo1/glucosamine-phosphate N-acetyltransferase Gna1, tandem fusion","termid":"PBO:0088518"}


id: PR:Q10335
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A 26S proteasome non-ATPase regulatory subunit 6 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO02451","PANTHER:PTHR14145:SF1","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"26S proteasome regulatory subunit rpn7 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC582.07c","secondary_identifiers":["UniProtKB:Q10335"],"synonyms":[{"name":"Spom972h-PSMD6","type":"exact"}],"termid":"PR:Q10335"}


id: PBO:0062247
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 5 subfamily BN member 1 pseudogene","termid":"PBO:0062247"}


id: PR:O14353
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A biotin--protein ligase that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PANTHER:PTHR12835:SF4","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"biotin--protein ligase (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC30D10.07c","secondary_identifiers":["UniProtKB:O14353"],"synonyms":[{"name":"SPBC30D10.07c","type":"related"},{"name":"Spom972h-HLCS","type":"exact"},{"name":"biotin apo-protein ligase (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:O14353"}


id: FYPO:0001123
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype in which a spore is longer than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal spore shape","termid":"FYPO:0002467"},{"relation_name":"is_a","term_name":"increased cell length","termid":"FYPO:0006633"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000005"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000005","FYPO:0000002"],"is_obsolete":false,"name":"elongated spore","synonyms":[{"name":"long spores","type":"exact"}],"termid":"FYPO:0001123"}


id: PBO:0011455
data:
  {"annotation_feature_type":"gene","cv_name":"cat_act","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"k_cat(x10-3sec-1) for base excision activity of N7-methylguanine = 2.6","termid":"PBO:0011455"}


id: PBO:0088507
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribulose phosphate 3-epimerase Rpe1","termid":"PBO:0088507"}


id: SO:1000101
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":".","definition_xrefs":["EBI:www.ebi.ac.uk/mutations/recommendations/mutevent.html"],"gene_count":0,"genotype_count":0,"name":"OBSOLETE SO:1000101 mutation_causing_polypeptide_C_terminal_elongation (obsolete SO:1000101)","synonyms":[{"name":"mutation causing polypeptide C terminal elongation","type":"exact"},{"name":"polypeptide C-terminal elongation","type":"exact"}],"termid":"SO:1000101"}


id: GO:0035831
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of palmatine, a berberine alkaloid found in many plants.","definition_xrefs":["PMID:21327819","GOC:yaf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"heterocycle biosynthetic process","termid":"GO:0018130"},{"relation_name":"is_a","term_name":"isoquinoline alkaloid biosynthetic process","termid":"GO:0033075"},{"relation_name":"is_a","term_name":"palmatine metabolic process","termid":"GO:0035830"},{"relation_name":"is_a","term_name":"organic cyclic compound biosynthetic process","termid":"GO:1901362"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0019748"}],"interesting_parent_ids":["GO:0019748","GO:0008150"],"is_obsolete":false,"name":"palmatine biosynthetic process","synonyms":[{"name":"palmatine anabolism","type":"exact"},{"name":"palmatine biosynthesis","type":"exact"},{"name":"palmatine formation","type":"exact"},{"name":"palmatine synthesis","type":"exact"}],"termid":"GO:0035831"}


id: PBO:0034678
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_transcription_from_CRE_promoter_during_cellular_response_to_miconazole","termid":"PBO:0034678"}


id: GO:0102049
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: indole-3-acetate + L-methionine + ATP(4-) = H+ + indole-3-acetyl-methionine + AMP(2-) + diphosphoric acid.","definition_xrefs":["GOC:pz","PMID:15659623"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ligase activity, forming carbon-nitrogen bonds","termid":"GO:0016879"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016874"}],"interesting_parent_ids":["GO:0016874","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"indole-3-acetyl-methionine synthetase activity","secondary_identifiers":["MetaCyc:RXN-10431"],"termid":"GO:0102049"}


id: GO:0019170
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: (R)-lactaldehyde + NAD+ = methylglyoxal + NADH + H+.","definition_xrefs":["EC:1.1.1.78"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor","termid":"GO:0016616"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0016491","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"methylglyoxal reductase (NADH-dependent) activity","secondary_identifiers":["RHEA:24528","MetaCyc:D-LACTALDEHYDE-DEHYDROGENASE-RXN"],"synonyms":[{"name":"(R)-lactaldehyde:NAD+ oxidoreductase activity","type":"related"},{"name":"D-lactaldehyde dehydrogenase activity","type":"exact"},{"name":"methylglyoxal reductase activity","type":"exact"}],"termid":"GO:0019170"}


id: MOD:01664
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-tryptophan residue to a 7'-hydroxy-L-tryptophan.","definition_xrefs":["PubMed:20223990","RESID:AA0520"],"direct_ancestors":[{"relation_name":"is_a","term_name":"monohydroxylated tryptophan","termid":"MOD:01622"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"7'-hydroxy-L-tryptophan","synonyms":[{"name":"(2S)-2-amino-3-(7-hydroxy-1H-indol-3-yl)propanoic acid","type":"exact"},{"name":"7'-hydroxy-L-tryptophan","type":"exact"},{"name":"7-hydroxy-L-tryptophan","type":"exact"}],"termid":"MOD:01664"}


id: PBO:0057942
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 3667","termid":"PBO:0057942"}


id: PBO:0047156
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"family with sequence similarity 184 member B","termid":"PBO:0047156"}


id: PBO:0025542
data:
  {"annotation_feature_type":"gene","cv_name":"disease_associated","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DNA repair-deficiency disorder","termid":"PBO:0025542"}


id: PBO:0006166
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-part_of","termid":"PBO:0006166"}


id: PBO:0085689
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein involved in regulation of cell wall composition and integrity; also involved in cell wall response to osmotic stress; overproduction suppresses a lysis sensitive PKC mutation; HLR1 has a paralog, LRE1, that arose from the whole genome duplication","termid":"PBO:0085689"}


id: GO:0051447
data:
  {"annotated_genes":["SJAG_04140","SJAG_01082","SJAG_01837","SJAG_00364","SJAG_00266","SJAG_03529","SJAG_04287","SJAG_01515","SJAG_02481","SJAG_03327","SJAG_01330","SJAG_02771","SJAG_04280","SJAG_04259","SJAG_03854","SJAG_03438","SJAG_01680"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[111651],"is_not":false,"summary":null,"term":"GO:0051447"},{"annotations":[101752,109799],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1905318"},{"annotations":[87103,111327,102050],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0033315"},{"annotations":[84808,109563,77028,102051,111328],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0051598"},{"annotations":[111922],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0033316"},{"annotations":[106545],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0075297"},{"annotations":[70639,77330],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0110031"},{"annotations":[94251],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1902103"},{"annotations":[103388],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0045128"},{"annotations":[109104],"is_not":false,"rel_names":["positively_regulates","regulates"],"summary":null,"term":"GO:1905326"},{"annotations":[96853],"is_not":false,"rel_names":["regulates"],"summary":null,"term":"GO:1905325"}]},"cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the rate or extent of progression through the meiotic cell cycle.","definition_xrefs":["GOC:ai","GOC:dph","GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of cell cycle","termid":"GO:0045786"},{"relation_name":"is_a","term_name":"regulation of meiotic cell cycle","termid":"GO:0051445"},{"relation_name":"is_a","term_name":"negative regulation of reproductive process","termid":"GO:2000242"},{"relation_name":"negatively_regulates","term_name":"meiotic cell cycle","termid":"GO:0051321"}],"gene_count":17,"genes_by_uniquename":{"SJAG_00266":null,"SJAG_00364":null,"SJAG_01082":null,"SJAG_01330":null,"SJAG_01515":null,"SJAG_01680":null,"SJAG_01837":null,"SJAG_02481":null,"SJAG_02771":null,"SJAG_03327":null,"SJAG_03438":null,"SJAG_03529":null,"SJAG_03854":null,"SJAG_04140":null,"SJAG_04259":null,"SJAG_04280":null,"SJAG_04287":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"negatively_regulates","termid":"GO:0007049"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0007049"}],"interesting_parent_ids":["GO:0007049","GO:0008150"],"is_obsolete":false,"name":"negative regulation of meiotic cell cycle","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"synonyms":[{"name":"down regulation of progression through meiotic cell cycle","type":"exact"},{"name":"down-regulation of progression through meiotic cell cycle","type":"exact"},{"name":"downregulation of progression through meiotic cell cycle","type":"exact"},{"name":"inhibition of progression through meiotic cell cycle","type":"narrow"},{"name":"negative regulation of meiotic cell cycle progression","type":"exact"},{"name":"negative regulation of progression through meiotic cell cycle","type":"exact"}],"termid":"GO:0051447","terms_by_termid":{"GO:0033315":null,"GO:0033316":null,"GO:0045128":null,"GO:0051447":null,"GO:0051598":null,"GO:0075297":null,"GO:0110031":null,"GO:1902103":null,"GO:1905318":null,"GO:1905325":null,"GO:1905326":null}}


id: GO:0019191
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Enables the transfer of cellobiose from one side of a membrane to the other. Cellobiose, or 4-O-beta-D-glucopyranosyl-D-glucose, is a disaccharide that represents the basic repeating unit of cellulose.","definition_xrefs":["GOC:mtg_transport","ISBN:0198506732","ISBN:0815340729"],"direct_ancestors":[{"relation_name":"is_a","term_name":"disaccharide transmembrane transporter activity","termid":"GO:0015154"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0022857"}],"interesting_parent_ids":["GO:0005215","GO:0022857","GO:0003674"],"is_obsolete":false,"name":"cellobiose transmembrane transporter activity","secondary_identifiers":["GO:0019190"],"synonyms":[{"name":"cellobiose permease activity","type":"exact"}],"termid":"GO:0019191"}


id: PBO:0080150
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ventral anterior homeobox 2","termid":"PBO:0080150"}


id: PBO:0088899
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Fen1 family nuclease, XP-G family","termid":"PBO:0088899"}


id: GO:0039573
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process in which a virus stops, prevents, or reduces the frequency, rate or extent of complement activation. The activation of complement involves the sequential proteolysis of proteins to generate enzymes with catalytic activities. The biological functions of the complement include opsonization, inflammation, lysis of immune complexes, or enhancement of the humoral immune response. For example, the virus complement control protein (VCP) of vaccinia virus, and the complement control protein of herpesvirus inhibit C3 convertase.","definition_xrefs":["PMID:21191012","PMID:7745740"],"gene_count":0,"genotype_count":0,"name":"obsolete suppression by virus of host complement activation (obsolete GO:0039573)","synonyms":[{"name":"inhibition of host complement activation by virus","type":"exact"},{"name":"inhibition of host complement cascade by virus","type":"exact"}],"termid":"GO:0039573"}


id: GO:0046896
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The methylation of the N-terminal leucine of proteins to form the derivative N-methyl-L-leucine.","definition_xrefs":["RESID:AA0337"],"direct_ancestors":[{"relation_name":"is_a","term_name":"N-terminal protein amino acid methylation","termid":"GO:0006480"},{"relation_name":"is_a","term_name":"peptidyl-leucine modification","termid":"GO:0018204"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"N-terminal peptidyl-leucine methylation","termid":"GO:0046896"}


id: PR:000050531
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A histone H4, hhf1 gene translation product (Schizosaccharomyces pombe) that has had the initiator methionine removed and that has been trimethylated at the position equivalent to Lys-21 of the amino acid sequence represented by UniProtKB:P09322. UniProtKB:P09322, 2-103, Lys-21, MOD:00083.","definition_xrefs":["PMID:22150589","PomBase:VW","PRO:DAN"],"direct_ancestors":[{"relation_name":"is_a","term_name":"histone H4, hhf1 gene translation product (Schizosaccharomyces pombe)","termid":"PR:000050526"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"hhf1/Me3:(K20)","pombase_gene_id":"SPAC1834.03c","synonyms":[{"name":"PRO_0000158357, Lys-21, MOD:00083","type":"exact"},{"name":"Spom-hhf1/InitMet-/Me3:1","type":"exact"},{"name":"UniProtKB:P09322, 2-103, Lys-21, MOD:00083","type":"broad"},{"name":"hhf1/Me3:(K20)","type":"exact"},{"name":"histone H4 K20me3 (Schizosaccharomyces pombe)","type":"broad"},{"name":"histone H4 hhf1 K20me3 (Schizosaccharomyces pombe)","type":"exact"}],"termid":"PR:000050531"}


id: PBO:0072927
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small Cajal body-specific RNA 8","termid":"PBO:0072927"}


id: PBO:0005258
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nucleoporin Nup61","termid":"PBO:0005258"}


id: SO:0001724
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A kind of histone modification site, whereby the 36th residue (a lysine), from the start of the H3 histone protein is tri-methylated.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"H3K36_methylation_site","termid":"SO:0001733"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"SO:0000839"}],"interesting_parent_ids":["SO:0000839"],"is_obsolete":false,"name":"H3K36_trimethylation_site","synonyms":[{"name":"H3K36 tri-methylation site","type":"exact"},{"name":"H3K36Me3","type":"related"}],"termid":"SO:0001724"}


id: PBO:0069111
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 360, pseudogene","termid":"PBO:0069111"}


id: PBO:0061179
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nuclear-encoded mitochondrial tRNA-Gln (TTG) 9-1","termid":"PBO:0061179"}


id: PBO:0027646
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-resistance_to_BE49385A","termid":"PBO:0027646"}


id: GO:0060379
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which a relatively unspecialized cell acquires specialized features of a cardiac myoblast. A cardiac myoblast is a precursor cell that has been committed to a cardiac muscle cell fate but retains the ability to divide and proliferate throughout life.","definition_xrefs":["GOC:tb","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cardioblast differentiation","termid":"GO:0010002"},{"relation_name":"is_a","term_name":"myoblast differentiation","termid":"GO:0045445"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cardiac muscle cell myoblast differentiation","synonyms":[{"name":"cardiac myoblast differentiation","type":"related"},{"name":"myocardial precursor cell differentiation","type":"exact"}],"termid":"GO:0060379"}


id: PBO:0060627
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NCKAP5 antisense RNA 1","termid":"PBO:0060627"}


id: PBO:0079162
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tetraspanin 31","termid":"PBO:0079162"}


id: PR:Q9C0V7
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"An arylsulfatase B that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx","OMA:SCHPO02326"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized sulfatase PB10D8.02c (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBPB10D8.02c","secondary_identifiers":["UniProtKB:Q9C0V7"],"synonyms":[{"name":"Spom972h-ARSB","type":"exact"}],"termid":"PR:Q9C0V7"}


id: PBO:0004394
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"COPII cargo receptor subunit Sec23b (predicted)","termid":"PBO:0004394"}


id: GO:1901209
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of heart looping.","definition_xrefs":["GOC:BHF","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of heart looping","termid":"GO:1901207"},{"relation_name":"is_a","term_name":"positive regulation of morphogenesis of an epithelium","termid":"GO:1905332"},{"relation_name":"positively_regulates","term_name":"heart looping","termid":"GO:0001947"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of heart looping","synonyms":[{"name":"activation of cardiac looping","type":"exact"},{"name":"activation of heart looping","type":"narrow"},{"name":"positive regulation of cardiac looping","type":"exact"},{"name":"up regulation of cardiac looping","type":"exact"},{"name":"up regulation of heart looping","type":"exact"},{"name":"up-regulation of cardiac looping","type":"exact"},{"name":"up-regulation of heart looping","type":"exact"},{"name":"upregulation of cardiac looping","type":"exact"},{"name":"upregulation of heart looping","type":"exact"}],"termid":"GO:1901209"}


id: PBO:0073848
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"solute carrier family 9 member A3","termid":"PBO:0073848"}


id: GO:0004293
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the preferential cleavage of Arg-Xaa bonds in small molecule substrates. Highly selective action to release kallidin (lysyl-bradykinin) from kininogen involves hydrolysis of Met-Xaa or Leu-Xaa. The rat enzyme is unusual in liberating bradykinin directly from autologous kininogens by cleavage at two Arg-Xaa bonds.","definition_xrefs":["GOC:curators"],"gene_count":0,"genotype_count":0,"name":"obsolete tissue kallikrein activity (obsolete GO:0004293)","synonyms":[{"name":"kininogenin activity","type":"related"},{"name":"bradykininogenase","type":"broad"},{"name":"callicrein","type":"related"},{"name":"depot-padutin","type":"related"},{"name":"dilminal D","type":"related"},{"name":"glandular kallikrein activity","type":"related"},{"name":"glumorin","type":"related"},{"name":"kallidinogenase","type":"broad"},{"name":"kidney kallikrein","type":"related"},{"name":"kininogenase","type":"broad"},{"name":"onokrein P","type":"related"},{"name":"padreatin","type":"related"},{"name":"padutin","type":"related"},{"name":"pancreatic kallikrein","type":"related"},{"name":"salivary kallikrein","type":"related"},{"name":"submandibular kallikrein","type":"related"},{"name":"submaxillary kallikrein","type":"related"},{"name":"tissue kallikrein activity","type":"exact"},{"name":"urinary kallikrein","type":"related"},{"name":"urokallikrein","type":"related"}],"termid":"GO:0004293"}


id: GO:1901998
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The directed movement of a toxin into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.","definition_xrefs":["GOC:dph","PMID:17118486","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"transport","termid":"GO:0006810"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0008150","GO:0051179","GO:0006810"],"is_obsolete":false,"name":"toxin transport","termid":"GO:1901998"}


id: PBO:0068558
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U2 small nuclear 9, pseudogene","termid":"PBO:0068558"}


id: GO:0015154
data:
  {"annotated_genes":["SJAG_03960"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[91372],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0005364"},{"annotations":[74949],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0008506"}]},"cv_name":"molecular_function","definition":"Enables the transfer of disaccharide from one side of a membrane to the other.","definition_xrefs":["GOC:mtg_transport","ISBN:0815340729","GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oligosaccharide transmembrane transporter activity","termid":"GO:0015157"}],"gene_count":1,"genes_by_uniquename":{"SJAG_03960":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0005215","GO:0003674","GO:0022857"],"is_obsolete":false,"name":"disaccharide transmembrane transporter activity","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"termid":"GO:0015154","terms_by_termid":{"GO:0005364":null,"GO:0008506":null}}


id: PBO:0082796
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Component of the U5 snRNP complex; required for splicing of U3 precursors; originally described as a splicing factor specifically required for splicing pre-mRNA of the MATa1 cistron","termid":"PBO:0082796"}


id: PBO:0069016
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 260, pseudogene","termid":"PBO:0069016"}


id: PBO:0079356
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tubulin alpha 1c","termid":"PBO:0079356"}


id: PBO:0069437
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 702, pseudogene","termid":"PBO:0069437"}


id: GO:0050303
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: H2O + NAD+ + L-lysine = NH3 + NADH + allysine.","definition_xrefs":["RHEA:12408","EC:1.4.1.18","MetaCyc:LYSINE-6-DEHYDROGENASE-RXN"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the CH-NH2 group of donors, NAD or NADP as acceptor","termid":"GO:0016639"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016491","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"lysine 6-dehydrogenase activity","secondary_identifiers":["MetaCyc:PWY-5314"],"synonyms":[{"name":"L-lysine 6-dehydrogenase activity","type":"related"},{"name":"L-lysine epsilon-dehydrogenase activity","type":"related"},{"name":"L-lysine:NAD+ 6-oxidoreductase (deaminating)","type":"related"},{"name":"LysDH activity","type":"related"}],"termid":"GO:0050303"}


id: PBO:0060612
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"neurochondrin","termid":"PBO:0060612"}


id: PBO:0057101
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 194-2","termid":"PBO:0057101"}


id: FYPO:0001291
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which the observed rate of CDP-diacylglycerol-serine O-phosphatidyltransferase activity is abnormal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal catalytic activity","termid":"FYPO:0000661"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0000654"},{"rel_name":"is_a","termid":"FYPO:0000661"},{"rel_name":"is_a","termid":"FYPO:0000707"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0000652","FYPO:0000661","FYPO:0000707","FYPO:0001985","FYPO:0000654"],"is_obsolete":false,"name":"abnormal CDP-diacylglycerol-serine O-phosphatidyltransferase activity","termid":"FYPO:0001291"}


id: PBO:0069932
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 1225, pseudogene","termid":"PBO:0069932"}


id: FYPO:0002441
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the rate, or speed, of actin cable retrograde transport is lower than normal. The process normally arrangement of actin cables from the periphery toward the interior of the cell. Actin cables are parallel actin filament bundles nucleated by formin, and are the most common form of actin filament bundles found in yeasts.","definition_xrefs":["PMID:23051734","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal actin cable distribution","termid":"FYPO:0002440"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0004803"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0000002","FYPO:0001985","FYPO:0004803","FYPO:0001320"],"is_obsolete":false,"name":"decreased rate of actin cable retrograde transport","synonyms":[{"name":"decreased rate of actin cable retrograde transport during mitotic cell cycle","type":"related"},{"name":"decreased rate of actin cable retrograde transport during vegetative growth","type":"exact"},{"name":"decreased rate of formin-nucleated actin cable retrograde flow","type":"exact"},{"name":"decreased rate of formin-nucleated actin cable retrograde transport","type":"exact"},{"name":"reduced rate of actin cable retrograde transport","type":"exact"}],"termid":"FYPO:0002441"}


id: SO:0001335
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"Undermodified_hydroxywybutosine is a modified guanosine base feature.","direct_ancestors":[{"relation_name":"is_a","term_name":"modified_guanosine","termid":"SO:0001276"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"undermodified_hydroxywybutosine","secondary_identifiers":["RNAMOD:040"],"synonyms":[{"name":"OHyW*","type":"exact"},{"name":"undermodified hydroxywybutosine","type":"exact"}],"termid":"SO:0001335"}


id: PBO:0078877
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA phosphotransferase 1","termid":"PBO:0078877"}


id: PBO:0076177
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sulfotransferase family 1E member 1","termid":"PBO:0076177"}


id: GO:0001770
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The directed orientation of natural killer cell signaling molecules and associated membrane rafts towards a chemokine gradient or a contact point with a cell displaying natural killer cell activating ligands.","definition_xrefs":["PMID:12615886","PMID:9759849","GOC:mgi_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"establishment of lymphocyte polarity","termid":"GO:0001767"},{"relation_name":"part_of","term_name":"natural killer cell activation","termid":"GO:0030101"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0007163"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0007163","GO:0008150"],"is_obsolete":false,"name":"establishment of natural killer cell polarity","synonyms":[{"name":"NK cell polarization","type":"exact"},{"name":"establishment of NK cell polarity","type":"exact"},{"name":"natural killer cell polarization","type":"exact"}],"termid":"GO:0001770"}


id: GO:0008780
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: (R)-3-hydroxytetradecanoyl-[acyl-carrier protein] + UDP-N-acetylglucosamine = [acyl-carrier protein] + UDP-3-O-(3-hydroxytetradecanoyl)-N-acetylglucosamine.","definition_xrefs":["EC:2.3.1.129"],"direct_ancestors":[{"relation_name":"is_a","term_name":"O-acyltransferase activity","termid":"GO:0008374"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016746"}],"interesting_parent_ids":["GO:0016740","GO:0003824","GO:0003674","GO:0016746"],"is_obsolete":false,"name":"acyl-[acyl-carrier-protein]-UDP-N-acetylglucosamine O-acyltransferase activity","secondary_identifiers":["MetaCyc:UDPNACETYLGLUCOSAMACYLTRANS-RXN","RHEA:13925"],"synonyms":[{"name":"(R)-3-hydroxytetradecanoyl-acyl-carrier-protein:UDP-N-acetylglucosamine 3-O-(3-hydroxytetradecanoyl)transferase activity","type":"related"},{"name":"UDP-N-acetylglucosamine acyltransferase activity","type":"related"},{"name":"acyl-ACP-UDP-N-acetylglucosamine O-acyltransferase activity","type":"exact"},{"name":"acyl-[acyl-carrier protein]-UDP-N-acetylglucosamine O-acyltransferase activity","type":"exact"},{"name":"acyl-acyl-carrier-protein-UDP-N-acetylglucosamine O-acyltransferase","type":"broad"},{"name":"uridine diphosphoacetylglucosamine acyltransferase activity","type":"related"}],"termid":"GO:0008780"}


id: PBO:0028870
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_poly(A)_tail_length","termid":"PBO:0028870"}


id: PBO:0070013
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 1310, pseudogene","termid":"PBO:0070013"}


id: GO:0099625
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which ions are transported across the plasma membrane of a ventricular cardiac muscle cell such that the membrane potential changes in the repolarizing direction, toward the steady state potential. For example, the repolarization during an action potential is from a positive membrane potential towards a negative resting potential.","definition_xrefs":["GOC:mtg_cardiac_conduct_nov11","GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cardiac muscle cell membrane repolarization","termid":"GO:0099622"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"ventricular cardiac muscle cell membrane repolarization","termid":"GO:0099625"}


id: GO:0005542
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to folic acid, pteroylglutamic acid. Folic acid is widely distributed as a member of the vitamin B complex and is essential for the synthesis of purine and pyrimidines.","definition_xrefs":["ISBN:0198506732","GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"vitamin binding","termid":"GO:0019842"},{"relation_name":"is_a","term_name":"carboxylic acid binding","termid":"GO:0031406"},{"relation_name":"is_a","term_name":"amide binding","termid":"GO:0033218"},{"relation_name":"is_a","term_name":"modified amino acid binding","termid":"GO:0072341"},{"relation_name":"is_a","term_name":"organic cyclic compound binding","termid":"GO:0097159"},{"relation_name":"is_a","term_name":"heterocyclic compound binding","termid":"GO:1901363"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005488"}],"interesting_parent_ids":["GO:0005488","GO:0003674"],"is_obsolete":false,"name":"folic acid binding","synonyms":[{"name":"folate binding","type":"exact"},{"name":"vitamin B9 binding","type":"exact"},{"name":"vitamin M binding","type":"exact"}],"termid":"GO:0005542"}


id: PBO:0041281
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"C1q and TNF related 7","termid":"PBO:0041281"}


id: GO:0038180
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The series of molecular signals initiated by nerve growth factor (NGF) binding to its receptor on the surface of a target cell, and ending with the regulation of a downstream cellular process, e.g. transcription.","definition_xrefs":["GOC:bf","PMID:11520933"],"direct_ancestors":[{"relation_name":"is_a","term_name":"neurotrophin signaling pathway","termid":"GO:0038179"},{"relation_name":"part_of","term_name":"cellular response to nerve growth factor stimulus","termid":"GO:1990090"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"nerve growth factor signaling pathway","secondary_identifiers":["Wikipedia:Nerve_growth_factor"],"synonyms":[{"name":"NGF signaling pathway","type":"exact"},{"name":"nerve growth factor signalling pathway","type":"exact"}],"termid":"GO:0038180"}


id: PBO:0028316
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_wtf-derived_RNA_level","termid":"PBO:0028316"}


id: GO:0005146
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to an leukemia inhibitory factor receptor.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cytokine receptor binding","termid":"GO:0005126"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0005515"}],"interesting_parent_ids":["GO:0003674","GO:0005488","GO:0005515"],"is_obsolete":false,"name":"leukemia inhibitory factor receptor binding","synonyms":[{"name":"leukemia inhibitory factor","type":"narrow"},{"name":"leukemia inhibitory factor receptor ligand","type":"narrow"}],"termid":"GO:0005146"}


id: GO:0033154
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + oligogalacturonide(out) = ADP + phosphate + oligogalacturonide(in).","definition_xrefs":["GOC:mlg","PMID:11555291","PMID:17451747"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ABC-type oligosaccharide transporter activity","termid":"GO:0015422"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0022857","GO:0005215"],"is_obsolete":false,"name":"ABC-type oligogalacturonide transporter activity","secondary_identifiers":["GO:0033155","TC:3.A.1.1.11"],"synonyms":[{"name":"ATP-dependent oligogalacturonide transmembrane transporter activity","type":"related"},{"name":"ATPase-coupled oligogalacturonide transmembrane transporter activity","type":"related"},{"name":"oligogalacturonide transmembrane transporter activity","type":"narrow"},{"name":"oligogalacturonide transporting ATPase activity","type":"related"},{"name":"oligogalacturonide-transporting ATPase activity","type":"exact"}],"termid":"GO:0033154"}


id: GO:0071097
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A protein complex that consists of an alphaV-beta3 integrin complex bound to paxillin and the FAK-related kinase Pyk2.","definition_xrefs":["PMID:11683411"],"direct_ancestors":[{"relation_name":"is_a","term_name":"plasma membrane protein complex","termid":"GO:0098797"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005886"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0005886","GO:0032991","GO:0005575"],"is_obsolete":false,"name":"alphaV-beta3 integrin-paxillin-Pyk2 complex","synonyms":[{"name":"ITGAV-ITGB3-PXN-PTK2b complex","type":"narrow"}],"termid":"GO:0071097"}


id: PBO:0026639
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_duration_of_mitotic_interphase","termid":"PBO:0026639"}


id: PBO:0028007
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_protein_localization_to_cytoskeleton","termid":"PBO:0028007"}


id: GO:0043024
data:
  {"annotated_genes":["SJAG_01117","SJAG_03658","SJAG_02061"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[73944,76690,99013],"is_not":false,"summary":null,"term":"GO:0043024"}]},"cv_name":"molecular_function","definition":"Binding to a small ribosomal subunit.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ribosome binding","termid":"GO:0043022"}],"gene_count":3,"genes_by_uniquename":{"SJAG_01117":null,"SJAG_02061":null,"SJAG_03658":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0005488","GO:0003674"],"is_obsolete":false,"name":"ribosomal small subunit binding","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"termid":"GO:0043024","terms_by_termid":{"GO:0043024":null}}


id: GO:1900061
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any positive regulation of transcription from RNA polymerase II promoter that is involved in calcium-mediated signaling.","definition_xrefs":["PMID:9407036","GOC:TermGenie","PMID:9407035"],"gene_count":0,"genotype_count":0,"name":"obsolete positive regulation of transcription from RNA polymerase II promoter involved in calcium-mediated signaling (obsolete GO:1900061)","synonyms":[{"name":"activation of global transcription from RNA polymerase II promoter of calcium ion signaling","type":"related"},{"name":"activation of global transcription from RNA polymerase II promoter of calcium signaling","type":"related"},{"name":"activation of global transcription from RNA polymerase II promoter of calcium signalling","type":"related"},{"name":"activation of global transcription from RNA polymerase II promoter of calcium-mediated signaling","type":"related"},{"name":"activation of global transcription from RNA polymerase II promoter of calcium-mediated signalling","type":"related"},{"name":"activation of transcription from RNA polymerase II promoter of calcium ion signaling","type":"narrow"},{"name":"activation of transcription from RNA polymerase II promoter of calcium signaling","type":"narrow"},{"name":"activation of transcription from RNA polymerase II promoter of calcium signalling","type":"narrow"},{"name":"activation of transcription from RNA polymerase II promoter of calcium-mediated signaling","type":"narrow"},{"name":"activation of transcription from RNA polymerase II promoter of calcium-mediated signalling","type":"narrow"},{"name":"positive regulation of gene-specific transcription from RNA polymerase II promoter of calcium ion signaling","type":"related"},{"name":"positive regulation of gene-specific transcription from RNA polymerase II promoter of calcium signaling","type":"related"},{"name":"positive regulation of gene-specific transcription from RNA polymerase II promoter of calcium signalling","type":"related"},{"name":"positive regulation of gene-specific transcription from RNA polymerase II promoter of calcium-mediated signaling","type":"related"},{"name":"positive regulation of gene-specific transcription from RNA polymerase II promoter of calcium-mediated signalling","type":"related"},{"name":"positive regulation of global transcription from Pol II promoter of calcium ion signaling","type":"related"},{"name":"positive regulation of global transcription from Pol II promoter of calcium signaling","type":"related"},{"name":"positive regulation of global transcription from Pol II promoter of calcium signalling","type":"related"},{"name":"positive regulation of global transcription from Pol II promoter of calcium-mediated signaling","type":"related"},{"name":"positive regulation of global transcription from Pol II promoter of calcium-mediated signalling","type":"related"},{"name":"positive regulation of transcription from Pol II promoter of calcium ion signaling","type":"exact"},{"name":"positive regulation of transcription from Pol II promoter of calcium signaling","type":"exact"},{"name":"positive regulation of transcription from Pol II promoter of calcium signalling","type":"exact"},{"name":"positive regulation of transcription from Pol II promoter of calcium-mediated signaling","type":"related"},{"name":"positive regulation of transcription from Pol II promoter of calcium-mediated signalling","type":"exact"},{"name":"positive regulation of transcription from RNA polymerase II promoter involved in calcium-mediated signaling","type":"exact"},{"name":"positive regulation of transcription from RNA polymerase II promoter of calcium ion signaling","type":"related"},{"name":"positive regulation of transcription from RNA polymerase II promoter of calcium signaling","type":"related"},{"name":"positive regulation of transcription from RNA polymerase II promoter of calcium signalling","type":"related"},{"name":"positive regulation of transcription from RNA polymerase II promoter of calcium-mediated signaling","type":"related"},{"name":"positive regulation of transcription from RNA polymerase II promoter of calcium-mediated signalling","type":"related"},{"name":"stimulation of global transcription from RNA polymerase II promoter of calcium ion signaling","type":"narrow"},{"name":"stimulation of global transcription from RNA polymerase II promoter of calcium signaling","type":"narrow"},{"name":"stimulation of global transcription from RNA polymerase II promoter of calcium signalling","type":"narrow"},{"name":"stimulation of global transcription from RNA polymerase II promoter of calcium-mediated signaling","type":"related"},{"name":"stimulation of global transcription from RNA polymerase II promoter of calcium-mediated signalling","type":"narrow"},{"name":"stimulation of transcription from RNA polymerase II promoter of calcium ion signaling","type":"exact"},{"name":"stimulation of transcription from RNA polymerase II promoter of calcium signaling","type":"exact"},{"name":"stimulation of transcription from RNA polymerase II promoter of calcium signalling","type":"exact"},{"name":"stimulation of transcription from RNA polymerase II promoter of calcium-mediated signaling","type":"related"},{"name":"stimulation of transcription from RNA polymerase II promoter of calcium-mediated signalling","type":"exact"},{"name":"up regulation of global transcription from RNA polymerase II promoter of calcium ion signaling","type":"related"},{"name":"up regulation of global transcription from RNA polymerase II promoter of calcium signaling","type":"related"},{"name":"up regulation of global transcription from RNA polymerase II promoter of calcium signalling","type":"related"},{"name":"up regulation of global transcription from RNA polymerase II promoter of calcium-mediated signaling","type":"related"},{"name":"up regulation of global transcription from RNA polymerase II promoter of calcium-mediated signalling","type":"related"},{"name":"up regulation of transcription from RNA polymerase II promoter of calcium ion signaling","type":"exact"},{"name":"up regulation of transcription from RNA polymerase II promoter of calcium signaling","type":"exact"},{"name":"up regulation of transcription from RNA polymerase II promoter of calcium signalling","type":"exact"},{"name":"up regulation of transcription from RNA polymerase II promoter of calcium-mediated signaling","type":"related"},{"name":"up regulation of transcription from RNA polymerase II promoter of calcium-mediated signalling","type":"exact"},{"name":"up-regulation of global transcription from RNA polymerase II promoter of calcium ion signaling","type":"related"},{"name":"up-regulation of global transcription from RNA polymerase II promoter of calcium signaling","type":"related"},{"name":"up-regulation of global transcription from RNA polymerase II promoter of calcium signalling","type":"related"},{"name":"up-regulation of global transcription from RNA polymerase II promoter of calcium-mediated signaling","type":"related"},{"name":"up-regulation of global transcription from RNA polymerase II promoter of calcium-mediated signalling","type":"related"},{"name":"up-regulation of transcription from RNA polymerase II promoter of calcium ion signaling","type":"exact"},{"name":"up-regulation of transcription from RNA polymerase II promoter of calcium signaling","type":"exact"},{"name":"up-regulation of transcription from RNA polymerase II promoter of calcium signalling","type":"exact"},{"name":"up-regulation of transcription from RNA polymerase II promoter of calcium-mediated signaling","type":"related"},{"name":"up-regulation of transcription from RNA polymerase II promoter of calcium-mediated signalling","type":"exact"},{"name":"upregulation of global transcription from RNA polymerase II promoter of calcium ion signaling","type":"related"},{"name":"upregulation of global transcription from RNA polymerase II promoter of calcium signaling","type":"related"},{"name":"upregulation of global transcription from RNA polymerase II promoter of calcium signalling","type":"related"},{"name":"upregulation of global transcription from RNA polymerase II promoter of calcium-mediated signaling","type":"related"},{"name":"upregulation of global transcription from RNA polymerase II promoter of calcium-mediated signalling","type":"related"},{"name":"upregulation of transcription from RNA polymerase II promoter of calcium ion signaling","type":"exact"},{"name":"upregulation of transcription from RNA polymerase II promoter of calcium signaling","type":"exact"},{"name":"upregulation of transcription from RNA polymerase II promoter of calcium signalling","type":"exact"},{"name":"upregulation of transcription from RNA polymerase II promoter of calcium-mediated signaling","type":"related"},{"name":"upregulation of transcription from RNA polymerase II promoter of calcium-mediated signalling","type":"exact"}],"termid":"GO:1900061"}


id: SO:0000480
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A clone which is part of a tiling path. A tiling path is a set of sequencing substrates, typically clones, which have been selected in order to efficiently cover a region of the genome in preparation for sequencing and assembly.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"clone","termid":"SO:0000151"},{"relation_name":"is_a","term_name":"tiling_path_fragment","termid":"SO:0000474"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tiling_path_clone","synonyms":[{"name":"tiling path clone","type":"exact"}],"termid":"SO:0000480"}


id: GO:0030445
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The wall surrounding a cell of a dimorphic fungus growing in the single-cell budding yeast form, in contrast to the filamentous or hyphal form.","definition_xrefs":["GOC:mah","GOC:mcc"],"direct_ancestors":[{"relation_name":"is_a","term_name":"fungal-type cell wall","termid":"GO:0009277"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005618"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575","GO:0005618"],"is_obsolete":false,"name":"yeast-form cell wall","termid":"GO:0030445"}


id: PBO:0004323
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"splicing factor Cwf22","termid":"PBO:0004323"}


id: PBO:0052866
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"keratin associated protein 5-9","termid":"PBO:0052866"}


id: PBO:0066088
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RAS p21 protein activator 2","termid":"PBO:0066088"}


id: PBO:0054631
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2036","termid":"PBO:0054631"}


id: PBO:0000166
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"3-methyl-2-oxobutanoatehydroxymethyltransferase(predicted)","termid":"PBO:0000166"}


id: PATO:0001162
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A concentration which is higher relative to the normal or average.","definition_xrefs":["PATOC:GVG"],"direct_ancestors":[{"relation_name":"increased_in_magnitude_relative_to","term_name":"normal","termid":"PATO:0000461"},{"relation_name":"is_a","term_name":"concentrated","termid":"PATO:0001159"},{"relation_name":"is_a","term_name":"increased object quality","termid":"PATO:0002305"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"increased concentration","synonyms":[{"name":"high concentration","type":"exact"}],"termid":"PATO:0001162"}


id: PBO:0043488
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ciliary neurotrophic factor","termid":"PBO:0043488"}


id: MOD:00041
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-glutamic acid residue to L-gamma-carboxyglutamic acid.","definition_xrefs":["PubMed:1807167","PubMed:7457858","RESID:AA0032","PubMed:8868490","PubMed:8135347","PubMed:9188685","DeltaMass:217","PubMed:10517147","OMSSA:48","PubMed:3263814","Unimod:299#E","PubMed:4528109"],"direct_ancestors":[{"relation_name":"is_a","term_name":"modified L-glutamic acid residue","termid":"MOD:00906"},{"relation_name":"is_a","term_name":"carboxylated residue","termid":"MOD:01152"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"L-gamma-carboxyglutamic acid","synonyms":[{"name":"(3S)-3-aminopropane-1,1,3-tricarboxylic acid","type":"exact"},{"name":"(3S)-3-azanylpropane-1,1,3-tricarboxylic acid","type":"exact"},{"name":"1-carboxyglutamic acid","type":"related"},{"name":"3-amino-1,1,3-propanetricarboxylic acid","type":"exact"},{"name":"3-azanylpropane-1,1,3-tricarboxylic acid","type":"exact"},{"name":"4-carboxyglutamic acid","type":"exact"},{"name":"4CbxGlu","type":"exact"},{"name":"Carboxy","type":"related"},{"name":"Carboxy Glutamyl","type":"exact"},{"name":"Carboxylation","type":"related"},{"name":"L-gamma-carboxyglutamic acid","type":"exact"},{"name":"MOD_RES 4-carboxyglutamate","type":"exact"},{"name":"gamma-carboxylated L-glutamic acid","type":"exact"},{"name":"gammacarboxyle","type":"exact"}],"termid":"MOD:00041"}


id: PBO:0041789
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CAPZA1 pseudogene 2","termid":"PBO:0041789"}


id: GO:0006969
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. (Was not defined before being made obsolete).","definition_xrefs":["GOC:add"],"gene_count":0,"genotype_count":0,"name":"obsolete melanotic tumor response (obsolete GO:0006969)","synonyms":[{"name":"melanotic mass response","type":"exact"},{"name":"melanotic tumor response","type":"exact"}],"termid":"GO:0006969"}


id: PBO:0053054
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"LINC00240 antisense RNA regulating promoter methylation","termid":"PBO:0053054"}


id: PBO:0052839
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"keratin associated protein 2-4","termid":"PBO:0052839"}


id: GO:0090154
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that increases the rate, frequency or extent of sphingolipid biosynthesis. Sphingolipid biosynthesis is the chemical reactions and pathways resulting in the formation of sphingolipids, any of a class of lipids containing the long-chain amine diol sphingosine or a closely related base (a sphingoid).","definition_xrefs":["GOC:ascb_2009","GOC:tb","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of cellular biosynthetic process","termid":"GO:0031328"},{"relation_name":"is_a","term_name":"positive regulation of lipid biosynthetic process","termid":"GO:0046889"},{"relation_name":"is_a","term_name":"positive regulation of nitrogen compound metabolic process","termid":"GO:0051173"},{"relation_name":"is_a","term_name":"regulation of sphingolipid biosynthetic process","termid":"GO:0090153"},{"relation_name":"positively_regulates","term_name":"sphingolipid biosynthetic process","termid":"GO:0030148"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0006629"},{"rel_name":"regulates","termid":"GO:0044085"},{"rel_name":"positively_regulates","termid":"GO:0006629"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006629","GO:0008150","GO:0044085"],"is_obsolete":false,"name":"positive regulation of sphingolipid biosynthetic process","termid":"GO:0090154"}


id: PBO:0040614
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"BAI1 associated protein 3","termid":"PBO:0040614"}


id: PBO:0073240
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"selenophosphate synthetase 1 pseudogene 4","termid":"PBO:0073240"}


id: PBO:0001915
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cytoplasmic phenylalanine-tRNA ligase alpha subunit Frs2 (predicted)","termid":"PBO:0001915"}


id: PBO:0072069
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein S11 pseudogene 7","termid":"PBO:0072069"}


id: PBO:0043313
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chloride intracellular channel 4 pseudogene 2","termid":"PBO:0043313"}


id: GO:0046626
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of insulin receptor signaling.","definition_xrefs":["GOC:bf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of signal transduction","termid":"GO:0009966"},{"relation_name":"regulates","term_name":"insulin receptor signaling pathway","termid":"GO:0008286"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"regulation of insulin receptor signaling pathway","synonyms":[{"name":"regulation of insulin receptor signalling pathway","type":"exact"}],"termid":"GO:0046626"}


id: GO:0045290
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: D-arabinose + NAD(P)+ = D-arabinono-1,4-lactone + NAD(P)H + H+.","definition_xrefs":["EC:1.1.1.117"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor","termid":"GO:0016616"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003824","GO:0016491","GO:0003674"],"is_obsolete":false,"name":"D-arabinose 1-dehydrogenase [NAD(P)+] activity","secondary_identifiers":["MetaCyc:1.1.1.117-RXN"],"synonyms":[{"name":"D-arabinose:NAD(P)+ 1-oxidoreductase activity","type":"related"}],"termid":"GO:0045290"}


id: PBO:0062946
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"proliferation-associated 2G4 pseudogene 4","termid":"PBO:0062946"}


id: GO:0061282
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which the tubules arranged along the proximal/distal axis of the mesonephric nephron acquire their identity.","definition_xrefs":["GOC:mtg_kidney_jan10"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pattern specification involved in mesonephros development","termid":"GO:0061227"},{"relation_name":"is_a","term_name":"specification of nephron tubule identity","termid":"GO:0072081"},{"relation_name":"part_of","term_name":"proximal/distal pattern formation involved in mesonephric nephron development","termid":"GO:0061226"},{"relation_name":"part_of","term_name":"mesonephric nephron tubule formation","termid":"GO:0061277"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"specification of mesonephric nephron tubule identity","termid":"GO:0061282"}


id: PBO:0069902
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 1193, pseudogene","termid":"PBO:0069902"}


id: PBO:0077137
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TIRAP antisense RNA 1","termid":"PBO:0077137"}


id: PBO:0085096
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Nuclear polyadenylated RNA-binding protein; required for export of poly(A)+ mRNA from the nucleus; proposed to couple mRNA export with 3' end processing via its interactions with Mex67p and Pcf11p; interacts with DBP2; inhibits the helicase activity of Dbp2; functionally redundant with Yra2p, another REF family member","termid":"PBO:0085096"}


id: FYPO:0006309
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which nucleosome occupancy is greater than normal at promoters containing FLEX elements. Nucleosome occupancy measures the tendency for DNA in a given region to be packaged into nucleosomes.","definition_xrefs":["PomBase:mah","PMID:26804917"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal nucleosome positioning at stress response genes","termid":"FYPO:0003812"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000641"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0001320","FYPO:0000002","FYPO:0001985","FYPO:0000641"],"is_obsolete":false,"name":"increased nucleosome occupancy at FLEX element","synonyms":[{"name":"increased nucleosome occupancy at FLEX element during mitotic cell cycle","type":"related"},{"name":"increased nucleosome occupancy at FLEX element during vegetative growth","type":"exact"}],"termid":"FYPO:0006309"}


id: PBO:0049196
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glutamate ionotropic receptor delta type subunit 2","termid":"PBO:0049196"}


id: PBO:0002897
data:
  {"annotation_feature_type":"gene","cv_name":"misc","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"promoter contains UAS","termid":"PBO:0002897"}


id: PBO:0005567
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NEDD8-conjugating enzyme Ubc12","termid":"PBO:0005567"}


id: GO:1902581
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. A cellular localization which involves another organism.","definition_xrefs":["GO_REF:0000089","GOC:jl","GOC:TermGenie"],"gene_count":0,"genotype_count":0,"name":"obsolete multi-organism cellular localization (obsolete GO:1902581)","synonyms":[{"name":"multi organism cellular localization","type":"exact"}],"termid":"GO:1902581"}


id: GO:0062014
data:
  {"annotated_genes":["SJAG_03130","SJAG_02104","SJAG_00685","SJAG_01187","SJAG_02380","SJAG_05314"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[89517],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0010895"},{"annotations":[70895],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0045717"},{"annotations":[75299,72697],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0045820"},{"annotations":[106716,110741],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:2001211"}]},"cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of a small molecule metabolic process.","definition_xrefs":["GOC:vw"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of metabolic process","termid":"GO:0009892"},{"relation_name":"is_a","term_name":"regulation of small molecule metabolic process","termid":"GO:0062012"},{"relation_name":"negatively_regulates","term_name":"small molecule metabolic process","termid":"GO:0044281"}],"gene_count":6,"genes_by_uniquename":{"SJAG_00685":null,"SJAG_01187":null,"SJAG_02104":null,"SJAG_02380":null,"SJAG_03130":null,"SJAG_05314":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"negatively_regulates","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0008150","GO:0044281"],"is_obsolete":false,"name":"negative regulation of small molecule metabolic process","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"synonyms":[{"name":"negative regulation of small molecule metabolism","type":"exact"}],"termid":"GO:0062014","terms_by_termid":{"GO:0010895":null,"GO:0045717":null,"GO:0045820":null,"GO:2001211":null}}


id: PBO:0048248
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"G antigen 12I","termid":"PBO:0048248"}


id: GO:0044010
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process in which planktonically growing microorganisms of the same species grow at a liquid-air interface or on a solid substrate under the flow of a liquid and produce extracellular polymers that facilitate matrix formation, resulting in a change in the organisms' growth rate and gene transcription.","definition_xrefs":["GOC:di","GOC:tb","GOC:cc"],"direct_ancestors":[{"relation_name":"is_a","term_name":"biofilm formation","termid":"GO:0042710"},{"relation_name":"is_a","term_name":"biological process involved in intraspecies interaction between organisms","termid":"GO:0051703"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"single-species biofilm formation","secondary_identifiers":["GO:0052000"],"synonyms":[{"name":"auto-aggregation","type":"broad"},{"name":"bfp-dependent aggregation","type":"narrow"},{"name":"bundle-forming fimbriae-dependent aggregation","type":"narrow"},{"name":"bundle-forming pili-dependent aggregation","type":"narrow"},{"name":"tfp-dependent aggregation","type":"narrow"},{"name":"type IV pili-dependent aggregation","type":"narrow"}],"termid":"GO:0044010"}


id: GO:0103072
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: a (R)-2-hydroxy even numbered straight chain 2,3,4-saturated fatty acyl CoA = formyl-CoA + an odd numbered straight chain 2,3,4-saturated fatty aldehyde.","definition_xrefs":["EC:4.1.-.-","GOC:pz"],"direct_ancestors":[{"relation_name":"is_a","term_name":"carbon-carbon lyase activity","termid":"GO:0016830"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016829"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0016829","GO:0003824"],"is_obsolete":false,"name":"straight chain (R)-2-hydroxy fatty acyl-CoA lyase activity","secondary_identifiers":["MetaCyc:RXN66-475"],"termid":"GO:0103072"}


id: PBO:0001443
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA (uridine) methyltransferase Trm9 (predicted)","termid":"PBO:0001443"}


id: FYPO:0001591
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the import of histidine into the cell occurs to a lower extent than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased amino acid import during vegetative growth","termid":"FYPO:0001360"},{"relation_name":"is_a","term_name":"abnormal histidine import","termid":"FYPO:0001655"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000138","FYPO:0001320","FYPO:0005447","FYPO:0000002"],"is_obsolete":false,"name":"decreased histidine import","synonyms":[{"name":"decreased L-histidine import","type":"exact"},{"name":"decreased L-histidine import across plasma membrane","type":"exact"},{"name":"decreased histidine import during mitotic cell cycle","type":"related"},{"name":"decreased histidine import during vegetative growth","type":"exact"},{"name":"decreased histidine import into cell","type":"exact"},{"name":"decreased histidine uptake","type":"exact"},{"name":"reduced histidine import","type":"exact"}],"termid":"FYPO:0001591"}


id: PBO:0005811
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"karyopherin Sal3","termid":"PBO:0005811"}


id: PBO:0061448
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nuclear receptor subfamily 3 group C member 2","termid":"PBO:0061448"}


id: PBO:0060000
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MT-ND4L pseudogene 20","termid":"PBO:0060000"}


id: PBO:0108621
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"IGBP1 pseudogene 4","termid":"PBO:0108621"}


id: GO:0098681
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A non-membrane bound, electron dense structure associated that extends perpendicular to the presynaptic membrane in ribbon synapses. The ribbon's surface is studded with small particles to which synaptic vesicles tether via fine filaments. The tethered vesicles function as a pool, several fold greater than the docked pool available for fast release, which supports sustained release of vesicles. Synaptic ribbons may be plate like or spherical.","definition_xrefs":["PMID:15626493"],"direct_ancestors":[{"relation_name":"is_a","term_name":"intracellular non-membrane-bounded organelle","termid":"GO:0043232"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"synaptic ribbon","termid":"GO:0098681"}


id: FYPO:0007535
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the phosphorylation of the serine residue at position 2 within one or more copies of the heptapeptide repeat (YSPTSPS) of the C-terminal domain of RNA polymerase II normal (i.e. indistinguishable from wild type).","definition_xrefs":["PMID:30282034","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal protein phosphorylation during vegetative growth","termid":"FYPO:0000776"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001312"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000257"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0000257","FYPO:0001320","FYPO:0001312"],"is_obsolete":false,"name":"normal phosphorylation of RNA polymerase II C-terminal domain serine 2 residues during vegetative growth","synonyms":[{"name":"normal phosphorylation of RNA polymerase II C-terminal domain serine 2 residues during mitotic cell cycle","type":"related"},{"name":"normal phosphorylation of RNA polymerase II CTD serine 2 residues during vegetative growth","type":"exact"}],"termid":"FYPO:0007535"}


id: PBO:0078114
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"T cell receptor alpha variable 3","termid":"PBO:0078114"}


id: GO:0008458
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: (R)-carnitine + octanoyl-CoA = (S)-octanoylcarnitine + CoA.","definition_xrefs":["RHEA:17177","EC:2.3.1.137"],"direct_ancestors":[{"relation_name":"is_a","term_name":"carnitine O-acyltransferase activity","termid":"GO:0016406"},{"relation_name":"is_a","term_name":"O-octanoyltransferase activity","termid":"GO:0016414"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016746"},{"rel_name":"is_a","termid":"GO:0016740"}],"interesting_parent_ids":["GO:0016740","GO:0016746","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"carnitine O-octanoyltransferase activity","secondary_identifiers":["Reactome:R-HSA-390281","MetaCyc:CARNITINE-O-OCTANOYLTRANSFERASE-RXN","KEGG_REACTION:R03779"],"synonyms":[{"name":"carnitine medium-chain acyltransferase activity","type":"related"},{"name":"easily solubilized mitochondrial carnitine palmitoyltransferase","type":"narrow"},{"name":"medium-chain/long-chain carnitine acyltransferase activity","type":"related"},{"name":"octanoyl-CoA:L-carnitine O-octanoyltransferase activity","type":"related"},{"name":"overt mitochondrial carnitine palmitoyltransferase","type":"narrow"}],"termid":"GO:0008458"}


id: PBO:0075398
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SP110 nuclear body protein","termid":"PBO:0075398"}


id: PBO:0082371
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Basic leucine zipper (bZIP) transcription factor","termid":"PBO:0082371"}


id: GO:0046178
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of D-gluconate, the anion of D-gluconic acid, the aldonic acid derived from glucose.","definition_xrefs":["ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"carbohydrate biosynthetic process","termid":"GO:0016051"},{"relation_name":"is_a","term_name":"D-gluconate metabolic process","termid":"GO:0019521"},{"relation_name":"is_a","term_name":"aldonic acid biosynthetic process","termid":"GO:0046175"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0005975"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0044281","GO:0008150","GO:0005975"],"is_obsolete":false,"name":"D-gluconate biosynthetic process","synonyms":[{"name":"D-gluconate anabolism","type":"exact"},{"name":"D-gluconate biosynthesis","type":"exact"},{"name":"D-gluconate formation","type":"exact"},{"name":"D-gluconate synthesis","type":"exact"}],"termid":"GO:0046178"}


id: PBO:0062504
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 8 subfamily G member 5","termid":"PBO:0062504"}


id: GO:0031538
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of chemical reactions and pathways involving anthocyanins.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of metabolic process","termid":"GO:0009892"},{"relation_name":"is_a","term_name":"regulation of anthocyanin metabolic process","termid":"GO:0031537"},{"relation_name":"negatively_regulates","term_name":"anthocyanin-containing compound metabolic process","termid":"GO:0046283"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of anthocyanin metabolic process","synonyms":[{"name":"down regulation of anthocyanin metabolic process","type":"exact"},{"name":"down-regulation of anthocyanin metabolic process","type":"exact"},{"name":"downregulation of anthocyanin metabolic process","type":"exact"},{"name":"inhibition of anthocyanin metabolic process","type":"narrow"},{"name":"negative regulation of anthocyanin metabolism","type":"exact"}],"termid":"GO:0031538"}


id: PBO:0079982
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"USP9Y pseudogene 20","termid":"PBO:0079982"}


id: GO:0019211
data:
  {"annotated_genes":["SJAG_04968","SJAG_00526","SJAG_04638","SJAG_00078","SJAG_00095","SJAG_03681","SJAG_00369","SJAG_01270"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[93274,88564,113159,110270,111171,72561],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0072542"},{"annotations":[71613,75054],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0008160"}]},"cv_name":"molecular_function","definition":"Binds to and increases the activity of a phosphatase.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"enzyme activator activity","termid":"GO:0008047"},{"relation_name":"is_a","term_name":"phosphatase regulator activity","termid":"GO:0019208"}],"gene_count":8,"genes_by_uniquename":{"SJAG_00078":null,"SJAG_00095":null,"SJAG_00369":null,"SJAG_00526":null,"SJAG_01270":null,"SJAG_03681":null,"SJAG_04638":null,"SJAG_04968":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0140677"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0030234"},{"rel_name":"is_a","termid":"GO:0098772"}],"interesting_parent_ids":["GO:0003674","GO:0140677","GO:0030234","GO:0098772"],"is_obsolete":false,"name":"phosphatase activator activity","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"termid":"GO:0019211","terms_by_termid":{"GO:0008160":null,"GO:0072542":null}}


id: PBO:0077866
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tropomyosin 3 pseudogene 7","termid":"PBO:0077866"}


id: PBO:0003934
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"histidinol dehydrogenase His2 (predicted)","termid":"PBO:0003934"}


id: GO:0019107
data:
  {"annotated_genes":["SJAG_00102"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[77018],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004379"}]},"cv_name":"molecular_function","definition":"Catalysis of the transfer of a myristoyl (CH3-[CH2]12-CO-) group to an acceptor molecule.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"acyltransferase activity, transferring groups other than amino-acyl groups","termid":"GO:0016747"}],"gene_count":1,"genes_by_uniquename":{"SJAG_00102":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016746"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016740","GO:0016746","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"myristoyltransferase activity","references_by_uniquename":{"GO_REF:0000033":null},"secondary_identifiers":["Reactome:R-HSA-162914","Reactome:R-HSA-141367"],"termid":"GO:0019107","terms_by_termid":{"GO:0004379":null}}


id: GO:0070994
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The series of events in which a stimulus indicating oxidative stress is received and converted into a molecular signal.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to oxidative stress","termid":"GO:0006979"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"detection of oxidative stress","termid":"GO:0070994"}


id: GO:0050379
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: UDP-alpha-D-glucuronate = UDP-L-iduronate.","definition_xrefs":["GOC:curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"racemase and epimerase activity, acting on carbohydrates and derivatives","termid":"GO:0016857"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016853"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016853","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"UDP-glucuronate 5'-epimerase activity","secondary_identifiers":["KEGG_REACTION:R01387"],"synonyms":[{"name":"C-5-uronosyl epimerase activity","type":"related"},{"name":"UDP-glucuronate 5' epimerase activity","type":"exact"},{"name":"UDP-glucuronic acid 5'-epimerase activity","type":"related"},{"name":"UDP-glucuronic acid epimerase activity","type":"related"},{"name":"UDPglucuronate 5'-epimerase activity","type":"related"},{"name":"uridine diphosphoglucuronate 5'-epimerase activity","type":"related"}],"termid":"GO:0050379"}


id: GO:0019730
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"An immune response against microbes mediated through a body fluid. Examples of this process are seen in the antimicrobial humoral response of Drosophila melanogaster and Mus musculus.","definition_xrefs":["GOC:go_curators","GOC:mtg_sensu"],"direct_ancestors":[{"relation_name":"is_a","term_name":"humoral immune response","termid":"GO:0006959"},{"relation_name":"is_a","term_name":"defense response to symbiont","termid":"GO:0140546"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"antimicrobial humoral response","secondary_identifiers":["GO:0006960","GO:0019735"],"termid":"GO:0019730"}


id: FYPO:0004206
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of mature snRNA measured in a cell is higher than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"altered snRNA or precursor level","termid":"FYPO:0005997"},{"relation_name":"is_a","term_name":"increased ncRNA level during vegetative growth","termid":"FYPO:0008146"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"output_of","termid":"FYPO:0006551"}],"interesting_parent_ids":["FYPO:0006551","FYPO:0005447","FYPO:0001320","FYPO:0001985","FYPO:0000002"],"is_obsolete":false,"name":"increased mature snRNA level","synonyms":[{"name":"increased mature small nuclear RNA level","type":"exact"},{"name":"increased mature snRNA accumulation","type":"related"},{"name":"increased mature snRNA level during mitotic cell cycle","type":"related"},{"name":"increased mature snRNA level during vegetative growth","type":"exact"},{"name":"increased mature snRNA transcript level","type":"broad"},{"name":"increased snRNA level","type":"broad"}],"termid":"FYPO:0004206"}


id: GO:0005604
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A collagen-containing extracellular matrix consisting of a thin layer of dense material found in various animal tissues interposed between the cells and the adjacent connective tissue. It consists of the basal lamina plus an associated layer of reticulin fibers.","definition_xrefs":["ISBN:0198547684","PMID:22505934"],"direct_ancestors":[{"relation_name":"is_a","term_name":"collagen-containing extracellular matrix","termid":"GO:0062023"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"basement membrane","secondary_identifiers":["Wikipedia:Basement_membrane","GO:0005605","GO:0008003"],"synonyms":[{"name":"basal lamina","type":"related"},{"name":"basement lamina","type":"related"},{"name":"lamina densa","type":"related"}],"termid":"GO:0005604"}


id: GO:0009871
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The series of molecular signals mediated by ethylene (ethene) involved in jasmonic acid/ethylene dependent systemic resistance.","definition_xrefs":["GOC:jy"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ethylene-activated signaling pathway","termid":"GO:0009873"},{"relation_name":"part_of","term_name":"jasmonic acid and ethylene-dependent systemic resistance","termid":"GO:0009861"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"jasmonic acid and ethylene-dependent systemic resistance, ethylene mediated signaling pathway","synonyms":[{"name":"ethene mediated signaling pathway (jasmonic acid/ethene-dependent systemic resistance)","type":"exact"},{"name":"ethylene mediated signaling pathway (jasmonic acid/ethylene-dependent systemic resistance)","type":"exact"},{"name":"jasmonic acid and ethene-dependent systemic resistance, ethene mediated signaling pathway","type":"exact"},{"name":"jasmonic acid/ethene-dependent systemic resistance, ethene mediated signaling pathway","type":"exact"},{"name":"jasmonic acid/ethene-dependent systemic resistance, ethene mediated signalling pathway","type":"exact"},{"name":"jasmonic acid/ethylene-dependent systemic resistance, ethylene mediated signaling pathway","type":"exact"},{"name":"jasmonic acid/ethylene-dependent systemic resistance, ethylene mediated signalling pathway","type":"exact"}],"termid":"GO:0009871"}


id: GO:0005551
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. (Was not defined before being made obsolete).","definition_xrefs":["GOC:go_curators"],"gene_count":0,"genotype_count":0,"name":"obsolete ubiquitin (obsolete GO:0005551)","termid":"GO:0005551"}


id: GO:2000880
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of dipeptide transport.","definition_xrefs":["GOC:obol"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of dipeptide transport","termid":"GO:0090089"},{"relation_name":"is_a","term_name":"positive regulation of oligopeptide transport","termid":"GO:2000878"},{"relation_name":"positively_regulates","term_name":"dipeptide transport","termid":"GO:0042938"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"positively_regulates","termid":"GO:0006810"},{"rel_name":"regulates","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0008150","GO:0006810"],"is_obsolete":false,"name":"positive regulation of dipeptide transport","termid":"GO:2000880"}


id: GO:0007549
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Compensating for the variation in the unpaired sex chromosome:autosome chromosome ratios between sexes by activation or inactivation of genes on one or both of the sex chromosomes.","definition_xrefs":["GOC:ems","PMID:11498577","PMID:30049999","PMID:35306885"],"direct_ancestors":[{"relation_name":"is_a","term_name":"epigenetic regulation of gene expression","termid":"GO:0040029"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006325"}],"interesting_parent_ids":["GO:0008150","GO:0010467","GO:0006325"],"is_obsolete":false,"name":"sex-chromosome dosage compensation","secondary_identifiers":["Wikipedia:Sex-chromosome_dosage_compensation"],"synonyms":[{"name":"dosage compensation","type":"broad"},{"name":"sex chromosome dosage compensation","type":"exact"}],"termid":"GO:0007549"}


id: PR:P21696
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- gpd1 gene.","definition_xrefs":["UniProtKB:P21696","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glycerol-3-phosphate dehydrogenase [NAD(+)] 1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC215.05","synonyms":[{"name":"GPD-C (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"GPDH-C (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-gpd1","type":"exact"}],"termid":"PR:P21696"}


id: PR:000025001
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A proteolytic cleavage product that is derived from propeptide removal from M-factor precursor, farnesylated 1. In Schizosaccharomyces pombe 972h- the sequence is YTPKVPYMC, with a farnesylated C-terminal residue.","definition_xrefs":["PMID:8196631","PMID:1547790","PRO:MSY"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein","termid":"PR:000000001"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mature M-factor","synonyms":[{"name":"mature M-factor","type":"exact"}],"termid":"PR:000025001"}


id: PATO:0001280
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"Pink color having medium brightness and low saturation.","definition_xrefs":["PATOC:GVG"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pink","termid":"PATO:0000954"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dark pale pink","secondary_identifiers":["PATO:0001279"],"synonyms":[{"name":"bright pink ","type":"related"}],"termid":"PATO:0001280"}


id: PR:O74769
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- bhd1 gene.","definition_xrefs":["PRO:DNx","UniProtKB:O74769"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"folliculin-like protein bhd1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC24C6.08c","synonyms":[{"name":"Spom972h-bhd1","type":"exact"}],"termid":"PR:O74769"}


id: GO:0042652
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The peripheral segment of respiratory chain complex I located in the mitochondrion. Respiratory chain complex I is an enzyme of the respiratory chain, consisting of at least 34 polypeptide chains. The electrons of NADH enter the chain at this complex. The complete complex is L-shaped, with a horizontal arm lying in the membrane and a vertical arm that projects into the matrix.","definition_xrefs":["GOC:mtg_sensu","ISBN:0716749556","GOC:jid"],"direct_ancestors":[{"relation_name":"is_a","term_name":"inner mitochondrial membrane protein complex","termid":"GO:0098800"},{"relation_name":"is_a","term_name":"respiratory chain complex","termid":"GO:0098803"},{"relation_name":"part_of","term_name":"mitochondrial respiratory chain complex I","termid":"GO:0005747"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"part_of","termid":"GO:0005739"},{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575","GO:0005739","GO:0005737","GO:0032991"],"is_obsolete":false,"name":"mitochondrial respiratory chain complex I, peripheral segment","synonyms":[{"name":"NADH dehydrogenase (ubiquinone) complex, peripheral segment","type":"broad"},{"name":"NADH-Q oxidoreductase complex, peripheral segment","type":"broad"}],"termid":"GO:0042652"}


id: PBO:0089944
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"prospore membrane alpha-1,3-glucan synthase Mok12","termid":"PBO:0089944"}


id: FYPO:0002287
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of RNA measured in a cell during a cellular response to heat is lower than normal. Total RNA or a specific RNA may be affected.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased RNA level during vegetative growth","termid":"FYPO:0001117"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0006551"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0006551","FYPO:0001320","FYPO:0000002","FYPO:0001985","FYPO:0005447"],"is_obsolete":false,"name":"decreased RNA level during cellular response to heat","synonyms":[{"name":"decreased RNA accumulation during cellular response to heat","type":"related"},{"name":"decreased RNA level during cellular response to heat during mitotic cell cycle","type":"related"},{"name":"decreased RNA level during cellular response to heat during vegetative growth","type":"exact"},{"name":"decreased RNA level during cellular response to heat shock","type":"narrow"},{"name":"decreased transcript level during cellular response to heat","type":"exact"},{"name":"reduced RNA level during cellular response to heat","type":"exact"}],"termid":"FYPO:0002287"}


id: FYPO:0006479
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype in which cohesin loading is abnormal. Cohesin loading is the topological linking of a cohesin ring complex to chromatin.","definition_xrefs":["GO:0071921","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation phenotype","termid":"FYPO:0000145"},{"relation_name":"is_a","term_name":"abnormal chromosome organization","termid":"FYPO:0000641"},{"relation_name":"is_a","term_name":"abnormal protein localization to chromatin","termid":"FYPO:0001679"},{"relation_name":"is_a","term_name":"abnormal cell cycle process","termid":"FYPO:0002734"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000641"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000631"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000631","FYPO:0000641","FYPO:0000002","FYPO:0000138","FYPO:0005447"],"is_obsolete":false,"name":"abnormal cohesin loading","synonyms":[{"name":"abnormal cohesin association with chromatin","type":"exact"},{"name":"abnormal cohesin localisation to chromatin","type":"exact"},{"name":"abnormal cohesin localization to chromatin","type":"exact"}],"termid":"FYPO:0006479"}


id: PBO:0075180
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SNRPE pseudogene 10","termid":"PBO:0075180"}


id: GO:0072647
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The appearance of interferon-epsilon due to biosynthesis or secretion following a cellular stimulus, resulting in an increase in its intracellular or extracellular levels.","definition_xrefs":["GOC:mah","PMID:15546383","GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"type I interferon production","termid":"GO:0032606"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0010467","GO:0008150"],"is_obsolete":false,"name":"interferon-epsilon production","secondary_identifiers":["GO:0072648"],"synonyms":[{"name":"IFN-epsilon production","type":"exact"},{"name":"IFNE production","type":"exact"},{"name":"interferon-epsilon secretion","type":"narrow"}],"termid":"GO:0072647"}


id: GO:0102845
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 1-18:3-2-16:0-monogalactosyldiacylglycerol + O2 + a reduced electron acceptor = 1-18:3-2-16:1-monogalactosyldiacylglycerol + 2 H2O + an oxidized electron acceptor.","definition_xrefs":["GOC:pz","EC:1.14.19.-"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water","termid":"GO:0016717"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016491","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"1-18:3-2-16:0-monogalactosyldiacylglycerol desaturase activity","secondary_identifiers":["MetaCyc:RXN-8307"],"termid":"GO:0102845"}


id: GO:0033129
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that activates or increases the frequency, rate or extent of the addition of one or more phosphate groups to a histone protein.","definition_xrefs":["GOC:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete positive regulation of histone phosphorylation (obsolete GO:0033129)","termid":"GO:0033129"}


id: PBO:0089676
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"major facilitator family transmembrane transporter Mug111","termid":"PBO:0089676"}


id: PBO:0050616
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"hydroxysteroid 17-beta dehydrogenase 7 pseudogene 2","termid":"PBO:0050616"}


id: PBO:0050527
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"heterochromatin protein 1 binding protein 3","termid":"PBO:0050527"}


id: PBO:0050875
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"IDH3B divergent transcript","termid":"PBO:0050875"}


id: GO:1903493
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a clopidogrel stimulus. Clopidogrel is a is an oral, thienopyridine-class antiplatelet agent used to inhibit blood clots in coronary artery disease, peripheral vascular disease, and cerebrovascular disease.","definition_xrefs":["GO_REF:0000071","GOC:TermGenie","PMID:23392654"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to organonitrogen compound","termid":"GO:0010243"},{"relation_name":"is_a","term_name":"response to organic cyclic compound","termid":"GO:0014070"},{"relation_name":"is_a","term_name":"response to oxygen-containing compound","termid":"GO:1901700"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"response to clopidogrel","termid":"GO:1903493"}


id: PBO:0036451
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nuclear export factor family protein, human LENG8 ortholog","termid":"PBO:0036451"}


id: PR:O94391
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPBC29A10.16c gene.","definition_xrefs":["UniProtKB:O94391","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cytochrome b5 1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC29A10.16c","synonyms":[{"name":"Spom972h-SPBC29A10.16c","type":"exact"}],"termid":"PR:O94391"}


id: PBO:0051224
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"immunoglobulin heavy variable IGHV8-51-1 (non-functional)","termid":"PBO:0051224"}


id: PBO:0088084
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"UBX domain-containing substrate adaptor for Cdc48p; ubiquitin regulatory X domain-containing protein that acts as a substrate recruiting cofactor for Cdc48p; positively regulates Glc7p PPase activity to promote growth and mitotic progression in complex with Cdc48p; ubiquitinated protein interactor involved in ER-associated degradation (ERAD); regulated by nuclear Ub-dependent degradation (INMAD pathway) independent of the Asi and Doa10 complexes; homolog of human p47 (NSFL1C)","termid":"PBO:0088084"}


id: PR:Q9Y7S6
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A kynurenine/alpha-aminoadipate aminotransferase, mitochondrial that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx","OMA:SCHPO05066"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"aromatic amino acid aminotransferase C569.07 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC569.07","secondary_identifiers":["UniProtKB:Q9Y7S6"],"synonyms":[{"name":"Spom972h-AADAT","type":"exact"}],"termid":"PR:Q9Y7S6"}


id: PBO:0081857
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein 790","termid":"PBO:0081857"}


id: GO:1901107
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving granaticin.","definition_xrefs":["UniPathway:UPA00175","GOC:TermGenie","GOC:yaf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"polyketide metabolic process","termid":"GO:0030638"},{"relation_name":"is_a","term_name":"heterocycle metabolic process","termid":"GO:0046483"},{"relation_name":"is_a","term_name":"organic cyclic compound metabolic process","termid":"GO:1901360"},{"relation_name":"is_a","term_name":"quinone metabolic process","termid":"GO:1901661"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0019748"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0008150","GO:0019748","GO:0044281"],"is_obsolete":false,"name":"granaticin metabolic process","synonyms":[{"name":"granaticin metabolism","type":"exact"}],"termid":"GO:1901107"}


id: GO:1900298
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of hexasaccharide transport.","definition_xrefs":["GOC:mengo_curators","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of transport","termid":"GO:0051051"},{"relation_name":"is_a","term_name":"regulation of hexasaccharide transport","termid":"GO:1900297"},{"relation_name":"negatively_regulates","term_name":"hexasaccharide transport","termid":"GO:2001102"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"negatively_regulates","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0006810","GO:0008150"],"is_obsolete":false,"name":"negative regulation of hexasaccharide transport","synonyms":[{"name":"down regulation of hexasaccharide transport","type":"exact"},{"name":"down-regulation of hexasaccharide transport","type":"exact"},{"name":"downregulation of hexasaccharide transport","type":"exact"},{"name":"inhibition of hexasaccharide transport","type":"narrow"}],"termid":"GO:1900298"}


id: GO:1902900
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The aggregation, arrangement and bonding together of a set of components to form a gut granule.","definition_xrefs":["GO_REF:0000079","GOC:kmv","GOC:TermGenie","PMID:17202409"],"direct_ancestors":[{"relation_name":"is_a","term_name":"vesicle organization","termid":"GO:0016050"},{"relation_name":"is_a","term_name":"organelle assembly","termid":"GO:0070925"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0044085"}],"interesting_parent_ids":["GO:0008150","GO:0044085"],"is_obsolete":false,"name":"gut granule assembly","synonyms":[{"name":"gut granule biogenesis","type":"exact"},{"name":"gut granule formation","type":"exact"}],"termid":"GO:1902900"}


id: PATO:0001268
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A color consisting of brown hue and low saturation.","definition_xrefs":["PATOC:GVG"],"direct_ancestors":[{"relation_name":"is_a","term_name":"brown","termid":"PATO:0000952"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"desaturated brown","synonyms":[{"name":"pale brown","type":"exact"}],"termid":"PATO:0001268"}


id: GO:0032040
data:
  {"annotated_genes":["SJAG_02046","SJAG_00572","SJAG_04424","SJAG_00538","SJAG_00945","SJAG_03156","SJAG_03252","SJAG_03410","SJAG_03077","SJAG_01764","SJAG_04908","SJAG_02024","SJAG_00245","SJAG_00657","SJAG_04069","SJAG_03569","SJAG_04224","SJAG_02530","SJAG_00838","SJAG_00772","SJAG_05186","SJAG_02287","SJAG_02350","SJAG_02662","SJAG_04475","SJAG_03654","SJAG_00744","SJAG_00253","SJAG_05187","SJAG_02377","SJAG_03341","SJAG_01907","SJAG_04033","SJAG_00879","SJAG_00294","SJAG_02608","SJAG_02702","SJAG_02372","SJAG_03028","SJAG_00943","SJAG_02300","SJAG_02025","SJAG_02681"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[70599,70881,70901,71158,71328,71609,72399,72413,72487,72956,73084,73821,74606,74763,74789,75175,75404,75630,75805,75927,76601,77068,77243,77371,77453,77879,78212,78263,78349,78756,83538,84979,86908,87701,88276,94344,96925,101653,105570,105930,108854,110474,112632],"is_not":false,"summary":null,"term":"GO:0032040"}]},"cv_name":"cellular_component","definition":"A large ribonucleoprotein complex that is an early preribosomal complex. In S. cerevisiae, it has a size of 80S and consists of the 35S pre-rRNA, early-associating ribosomal proteins most of which are part of the small ribosomal subunit, the U3 snoRNA and associated proteins.","definition_xrefs":["PMID:15120992","PMID:12957375","PMID:15590835","GOC:vw","PMID:12068309","GOC:krc"],"direct_ancestors":[{"relation_name":"is_a","term_name":"preribosome","termid":"GO:0030684"}],"gene_count":43,"genes_by_uniquename":{"SJAG_00245":null,"SJAG_00253":null,"SJAG_00294":null,"SJAG_00538":null,"SJAG_00572":null,"SJAG_00657":null,"SJAG_00744":null,"SJAG_00772":null,"SJAG_00838":null,"SJAG_00879":null,"SJAG_00943":null,"SJAG_00945":null,"SJAG_01764":null,"SJAG_01907":null,"SJAG_02024":null,"SJAG_02025":null,"SJAG_02046":null,"SJAG_02287":null,"SJAG_02300":null,"SJAG_02350":null,"SJAG_02372":null,"SJAG_02377":null,"SJAG_02530":null,"SJAG_02608":null,"SJAG_02662":null,"SJAG_02681":null,"SJAG_02702":null,"SJAG_03028":null,"SJAG_03077":null,"SJAG_03156":null,"SJAG_03252":null,"SJAG_03341":null,"SJAG_03410":null,"SJAG_03569":null,"SJAG_03654":null,"SJAG_04033":null,"SJAG_04069":null,"SJAG_04224":null,"SJAG_04424":null,"SJAG_04475":null,"SJAG_04908":null,"SJAG_05186":null,"SJAG_05187":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0030684"}],"interesting_parent_ids":["GO:0032991","GO:0005575","GO:0030684"],"is_obsolete":false,"name":"small-subunit processome","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"synonyms":[{"name":"SSU processome","type":"exact"},{"name":"small subunit processome","type":"exact"}],"termid":"GO:0032040","terms_by_termid":{"GO:0032040":null}}


id: GO:1990973
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A linear array of nuclear envelope membrane proteins composed of nesprin-2G and SUN2, which couple the nucleus to moving actin cables, resulting in rearward nuclear transport (away from the leading edge).","definition_xrefs":["GOC:hjd","PMID:21173262"],"direct_ancestors":[{"relation_name":"is_a","term_name":"intracellular non-membrane-bounded organelle","termid":"GO:0043232"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"transmembrane actin-associated (TAN) line","synonyms":[{"name":"TAN line","type":"related"}],"termid":"GO:1990973"}


id: PBO:0082434
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Broad specificity amino acid permease; high-affinity glutamine permease; major serine permease with minor contributions from paralog Agp1p; role in serine uptake impacts cellular sphingolipid homeostasis; also transports Leu, Thr, Cys, Met and Asn; expression is fully dependent on Grr1p and modulated by the Ssy1p-Ptr3p-Ssy5p (SPS) sensor of extracellular amino acids","termid":"PBO:0082434"}


id: PBO:0080180
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"VDAC2 pseudogene 1","termid":"PBO:0080180"}


id: GO:0033425
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"A triplet codon-amino acid adaptor activity that recognizes a CAU codon.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"triplet codon-amino acid adaptor activity","termid":"GO:0030533"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0060090"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003723"}],"interesting_parent_ids":["GO:0003674","GO:0060090","GO:0005488","GO:0003723"],"is_obsolete":false,"name":"CAU codon-amino acid adaptor activity","synonyms":[{"name":"CAT codon-amino acid adaptor activity","type":"exact"},{"name":"histidine tRNA","type":"related"}],"termid":"GO:0033425"}


id: PR:Q9P7I2
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- cmk1 gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q9P7I2"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"calcium/calmodulin-dependent protein kinase type I (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPACUNK12.02c","synonyms":[{"name":"CaMK-I (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-cmk1","type":"exact"}],"termid":"PR:Q9P7I2"}


id: GO:0051952
data:
  {"annotated_genes":["SJAG_05346","SJAG_03591","SJAG_00991","SJAG_02605","SJAG_03970"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[83872],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1905533"},{"annotations":[94434,105903,87405,88958],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1905589"},{"annotations":[88959],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1905626"},{"annotations":[94435,88960,87406],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1905534"}]},"cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of the directed movement of amines into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of transport","termid":"GO:0051049"},{"relation_name":"regulates","term_name":"amine transport","termid":"GO:0015837"}],"gene_count":5,"genes_by_uniquename":{"SJAG_00991":null,"SJAG_02605":null,"SJAG_03591":null,"SJAG_03970":null,"SJAG_05346":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006810","GO:0008150"],"is_obsolete":false,"name":"regulation of amine transport","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0051952","terms_by_termid":{"GO:1905533":null,"GO:1905534":null,"GO:1905589":null,"GO:1905626":null}}


id: GO:0022821
data:
  {"annotated_genes":["SJAG_04616"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[78728],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0015386"}]},"cv_name":"molecular_function","definition":"Catalysis of the active transport of a potassium ion across a membrane by a mechanism whereby two or more species are transported in opposite directions in a tightly coupled process not directly linked to a form of energy other than chemiosmotic energy.","definition_xrefs":["ISBN:0815340729","GOC:mtg_transport"],"direct_ancestors":[{"relation_name":"is_a","term_name":"potassium ion transmembrane transporter activity","termid":"GO:0015079"},{"relation_name":"is_a","term_name":"metal cation:monoatomic cation antiporter activity","termid":"GO:0140828"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04616":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0005215"}],"interesting_parent_ids":["GO:0005215","GO:0022857","GO:0003674"],"is_obsolete":false,"name":"solute:potassium antiporter activity","references_by_uniquename":{"GO_REF:0000033":null},"synonyms":[{"name":"potassium ion antiporter activity","type":"exact"}],"termid":"GO:0022821","terms_by_termid":{"GO:0015386":null}}


id: PBO:0064238
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"phosphatidylinositol specific phospholipase C X domain containing 2","termid":"PBO:0064238"}


id: PBO:0045907
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"EF-hand calcium binding domain 5","termid":"PBO:0045907"}


id: PR:Q9UUK7
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A phosphoribosylglycinamide formyltransferase that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO05064","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"phosphoribosylglycinamide formyltransferase (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC569.08c","secondary_identifiers":["UniProtKB:Q9UUK7"],"synonyms":[{"name":"5'-phosphoribosylglycinamide transformylase (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"GAR transformylase (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"GART (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-purN","type":"exact"}],"termid":"PR:Q9UUK7"}


id: PBO:0043162
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cell death inducing DFFA like effector b","termid":"PBO:0043162"}


id: GO:0072172
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The developmental process pertaining to the initial formation of a mesonephric tubule from unspecified parts. A mesonephric tubule is an epithelial tube that is part of the mesonephros.","definition_xrefs":["GOC:mtg_kidney_jan10"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nephron tubule formation","termid":"GO:0072079"},{"relation_name":"part_of","term_name":"mesonephric tubule morphogenesis","termid":"GO:0072171"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"mesonephric tubule formation","termid":"GO:0072172"}


id: GO:0010735
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that increases the frequency, rate or extent of the specifically regulated synthesis of RNA from DNA encoding a specific set of genes as a result of a transcription factor interacting with a serum response element (SRE). A serum response element is a short sequence with dyad symmetry found in the promoters of some of the cellular immediate-early genes, regulated by serum.","definition_xrefs":["GOC:rl","GOC:tb","GOC:BHF","GOC:dph"],"gene_count":0,"genotype_count":0,"name":"obsolete positive regulation of transcription via serum response element binding (obsolete GO:0010735)","termid":"GO:0010735"}


id: PBO:0078121
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"T cell receptor alpha variable 8-3","termid":"PBO:0078121"}


id: PBO:0045957
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"EGFLAM antisense RNA 4","termid":"PBO:0045957"}


id: FYPO:0005550
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of protein measured in a cell during a cellular response to hydroxyurea is normal (i.e. indistinguishable from wild type). Total protein or a specific protein may be affected.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal protein level during vegetative growth","termid":"FYPO:0000833"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0001312"}],"interesting_parent_ids":["FYPO:0000257","FYPO:0001320","FYPO:0000002","FYPO:0001312"],"is_obsolete":false,"name":"normal protein level during cellular response to hydroxyurea","synonyms":[{"name":"normal protein accumulation during cellular response to hydroxyurea","type":"related"},{"name":"normal protein level during cellular response to HU","type":"exact"},{"name":"normal protein level during cellular response to hydroxyurea during mitotic cell cycle","type":"related"},{"name":"normal protein level during cellular response to hydroxyurea during vegetative growth","type":"exact"}],"termid":"FYPO:0005550"}


id: GO:1904614
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a biphenyl stimulus.","definition_xrefs":["GOC:TermGenie","PMID:23196670","GO_REF:0000071"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to organic cyclic compound","termid":"GO:0014070"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"response to biphenyl","termid":"GO:1904614"}


id: GO:0072119
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process that contributes to the act of creating the structural organization of the head kidney. This process pertains to the physical shaping of a rudimentary structure. The head kidney is a pronephros that consists of fused bilateral lobes located in the anterior part of the kidney.","definition_xrefs":["ZFA:0000669","GOC:mtg_kidney_jan10"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pronephros structural organization","termid":"GO:0072118"},{"relation_name":"part_of","term_name":"head kidney morphogenesis","termid":"GO:0072115"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"head kidney structural organization","synonyms":[{"name":"head kidney structural organisation","type":"exact"}],"termid":"GO:0072119"}


id: GO:1901857
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of cellular respiration.","definition_xrefs":["GOC:TermGenie","GOC:yaf","PMID:23150719"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of cellular metabolic process","termid":"GO:0031325"},{"relation_name":"is_a","term_name":"regulation of cellular respiration","termid":"GO:0043457"},{"relation_name":"positively_regulates","term_name":"cellular respiration","termid":"GO:0045333"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0006091"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"positively_regulates","termid":"GO:0006091"}],"interesting_parent_ids":["GO:0008150","GO:0006091"],"is_obsolete":false,"name":"positive regulation of cellular respiration","synonyms":[{"name":"activation of cellular respiration","type":"narrow"},{"name":"activation of oxidative metabolic process","type":"exact"},{"name":"activation of oxidative metabolism","type":"exact"},{"name":"activation of respiration","type":"broad"},{"name":"positive regulation of oxidative metabolic process","type":"exact"},{"name":"positive regulation of oxidative metabolism","type":"exact"},{"name":"positive regulation of respiration","type":"broad"},{"name":"up regulation of cellular respiration","type":"exact"},{"name":"up regulation of oxidative metabolic process","type":"exact"},{"name":"up regulation of oxidative metabolism","type":"exact"},{"name":"up regulation of respiration","type":"broad"},{"name":"up-regulation of cellular respiration","type":"exact"},{"name":"up-regulation of oxidative metabolic process","type":"exact"},{"name":"up-regulation of oxidative metabolism","type":"exact"},{"name":"up-regulation of respiration","type":"broad"},{"name":"upregulation of cellular respiration","type":"exact"},{"name":"upregulation of oxidative metabolic process","type":"exact"},{"name":"upregulation of oxidative metabolism","type":"exact"},{"name":"upregulation of respiration","type":"broad"}],"termid":"GO:1901857"}


id: GO:0042957
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Enables the transfer of dextrin, any one, or the mixture, of the intermediate polysaccharides formed during the hydrolysis of starch, which are dextrorotatory, soluble in water, and precipitable in alcohol, from one side of a membrane to the other.","definition_xrefs":["GOC:vk","GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"polysaccharide transmembrane transporter activity","termid":"GO:0015159"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005215"}],"interesting_parent_ids":["GO:0003674","GO:0005215","GO:0022857"],"is_obsolete":false,"name":"dextrin transmembrane transporter activity","termid":"GO:0042957"}


id: PBO:0071813
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein S2 pseudogene 8","termid":"PBO:0071813"}


id: PBO:0035965
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_number_of_Rad52_foci_during_cellular_response_to_acetaldehyde","termid":"PBO:0035965"}


id: PBO:0066046
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RAP1B pseudogene 2","termid":"PBO:0066046"}


id: PBO:0065663
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protein tyrosine phosphatase receptor type M","termid":"PBO:0065663"}


id: PBO:0028973
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abolished_protein_localization_to_microtubule_during_mitosis","termid":"PBO:0028973"}


id: GO:0014838
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which a satellite cell becomes capable of differentiating autonomously into a myoblast in an environment that is neutral with respect to the developmental pathway. Upon specification, the cell fate can be reversed. This occurs as part of skeletal muscle regeneration. A myoblast is a mononucleate cell type that, by fusion with other myoblasts, gives rise to the myotubes that eventually develop into skeletal muscle fibers.","definition_xrefs":["CL:0000056","PMID:16607119","GOC:ef","GOC:mtg_muscle"],"direct_ancestors":[{"relation_name":"is_a","term_name":"myoblast fate specification","termid":"GO:0048626"},{"relation_name":"part_of","term_name":"myoblast fate commitment involved in skeletal muscle regeneration","termid":"GO:0014836"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"myoblast fate specification involved in skeletal muscle regeneration","termid":"GO:0014838"}


id: PBO:0053173
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"lncRNA enhancing IL-6/STAT3 signaling activation 1","termid":"PBO:0053173"}


id: PBO:0084694
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Mitochondrial DNA polymerase gamma; single subunit of mitochondrial DNA polymerase in yeast, in contrast to metazoan complex of catalytic and accessory subunits; polymorphic in yeast, petites occur more frequently in some lab strains; human ortholog POLG complements yeast mip1 mutant; mutations in human POLG associated with Alpers-Huttenlocher syndrome (AHS), progressive external ophthalmoplegia (PEO), parkinsonism, other mitochondrial diseases","termid":"PBO:0084694"}


id: GO:0006018
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of deoxyribose 1-phosphate, the phosphorylated sugar 1-phospho-2-deoxyribose.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"2-deoxyribose 1-phosphate metabolic process","termid":"GO:0046384"},{"relation_name":"is_a","term_name":"deoxyribose phosphate catabolic process","termid":"GO:0046386"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"2-deoxyribose 1-phosphate catabolic process","synonyms":[{"name":"2-deoxyribose 1-phosphate breakdown","type":"exact"},{"name":"2-deoxyribose 1-phosphate catabolism","type":"exact"},{"name":"2-deoxyribose 1-phosphate degradation","type":"exact"},{"name":"deoxyribose 1-phosphate catabolic process","type":"exact"}],"termid":"GO:0006018"}


id: GO:0070577
data:
  {"annotated_genes":["SJAG_05252","SJAG_00591","SJAG_02625","SJAG_00837"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[70847,74618,75971,77595],"is_not":false,"summary":null,"term":"GO:0070577"}]},"cv_name":"molecular_function","definition":"Binding to a histone in which a lysine residue has been modified by acetylation.","definition_xrefs":["GOC:BHF","GOC:mah","GOC:rl","PMID:17582821"],"direct_ancestors":[{"relation_name":"is_a","term_name":"histone binding","termid":"GO:0042393"},{"relation_name":"is_a","term_name":"acetylation-dependent protein binding","termid":"GO:0140033"}],"gene_count":4,"genes_by_uniquename":{"SJAG_00591":null,"SJAG_00837":null,"SJAG_02625":null,"SJAG_05252":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005515"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005488"}],"interesting_parent_ids":["GO:0005515","GO:0003674","GO:0005488"],"is_obsolete":false,"name":"lysine-acetylated histone binding","references_by_uniquename":{"GO_REF:0000033":null},"synonyms":[{"name":"acetylated histone residue binding","type":"broad"}],"termid":"GO:0070577","terms_by_termid":{"GO:0070577":null}}


id: PBO:0063574
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PER3 pseudogene 1","termid":"PBO:0063574"}


id: GO:0052203
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The process in which an organism effects a change in enzyme activity in a second organism, where the two organisms are in a symbiotic interaction.","definition_xrefs":["GOC:tb","GOC:mtg_pamgo_17jul06"],"gene_count":0,"genotype_count":0,"name":"obsolete modulation of catalytic activity in other organism involved in symbiotic interaction (obsolete GO:0052203)","synonyms":[{"name":"modulation of enzyme activity within other organism during symbiotic interaction","type":"exact"}],"termid":"GO:0052203"}


id: GO:2000491
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of hepatic stellate cell activation.","definition_xrefs":["GOC:obol"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of cell activation","termid":"GO:0050867"},{"relation_name":"is_a","term_name":"regulation of hepatic stellate cell activation","termid":"GO:2000489"},{"relation_name":"positively_regulates","term_name":"hepatic stellate cell activation","termid":"GO:0035733"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of hepatic stellate cell activation","termid":"GO:2000491"}


id: PBO:0034199
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-intracellular_endoparasite_of","termid":"PBO:0034199"}


id: PBO:0064211
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"phospholipase B domain containing 1","termid":"PBO:0064211"}


id: PBO:0090905
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DNA-binding forkhead transcription factor Fkh2","termid":"PBO:0090905"}


id: PBO:0039052
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"angiogenic factor with G-patch and FHA domains 1 pseudogene 1","termid":"PBO:0039052"}


id: PBO:0041061
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"bromodomain testis associated","termid":"PBO:0041061"}


id: PBO:0053626
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 670","termid":"PBO:0053626"}


id: GO:0009758
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A series of processes that forms an integrated mechanism by which a cell or an organism detects the depletion of primary carbohydrate sources,usually glucose, and then activates genes to scavenge the last traces of the primary carbohydrate source and to transport and metabolize alternate carbohydrate sources. The utilization process begins when the cell or organism detects carbohydrate levels, includes the activation of genes whose products detect, transport or metabolize carbohydrates, and ends when the carbohydrate is incorporated into the cell or organism's metabolism.","definition_xrefs":["GOC:mah","GOC:mlg","GOC:mcc2"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to nutrient levels","termid":"GO:0031667"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"carbohydrate utilization","secondary_identifiers":["GO:0007587"],"synonyms":[{"name":"sugar utilization","type":"narrow"}],"termid":"GO:0009758"}


id: GO:0052638
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: indole-3-butyrate + UDP-D-glucose = indole-3-butyryl-beta-1-D-glucose + UDP.","definition_xrefs":["MetaCyc:RXN-11655","RHEA:62708"],"direct_ancestors":[{"relation_name":"is_a","term_name":"UDP-glucosyltransferase activity","termid":"GO:0035251"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0016757"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016757","GO:0003824","GO:0003674","GO:0016740"],"is_obsolete":false,"name":"indole-3-butyrate beta-glucosyltransferase activity","synonyms":[{"name":"IBA-Glc synthetase activity","type":"exact"},{"name":"IBA-glucose synthase activity","type":"exact"},{"name":"IBAGlu synthase activity","type":"exact"},{"name":"UDP-glucose:(indol-3-yl)butyrate beta-D-glucosyltransferase activity","type":"exact"},{"name":"UDP-glucose:indol-3-ylbutyrate glucosyl-transferase activity","type":"exact"},{"name":"UDP-glucose:indol-3-ylbutyrate glucosyltransferase activity","type":"exact"},{"name":"UDPG-indol-3-ylbutyryl glucosyl transferase activity","type":"exact"},{"name":"UDPglucose:indole-3-butyrate beta-D-glucosyltransferase activity","type":"exact"},{"name":"indol-3-ylbutyrylglucose synthase activity","type":"exact"},{"name":"indole-3-butyric acid glucosyltransferase activity","type":"exact"},{"name":"uridine diphosphoglucose-indolebutyrate glucosyltransferase activity","type":"exact"}],"termid":"GO:0052638"}


id: GO:0030899
data:
  {"annotated_genes":["SJAG_03703"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[113098],"is_not":false,"summary":null,"term":"GO:0030899"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: ATP + H2O = ADP + phosphate. This reaction requires the presence of calcium ion (Ca2+).","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ATP-dependent activity","termid":"GO:0140657"}],"gene_count":1,"genes_by_uniquename":{"SJAG_03703":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674"],"is_obsolete":false,"name":"calcium-dependent ATPase activity","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0030899","terms_by_termid":{"GO:0030899":null}}


id: GO:0005133
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a type II interferon receptor. Type II interferon is also known as interferon-gamma.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cytokine receptor binding","termid":"GO:0005126"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005515"},{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0005515","GO:0005488","GO:0003674"],"is_obsolete":false,"name":"type II interferon receptor binding","synonyms":[{"name":"interferon-gamma","type":"narrow"},{"name":"interferon-gamma receptor binding","type":"exact"},{"name":"interferon-gamma receptor ligand","type":"narrow"}],"termid":"GO:0005133"}


id: PBO:0002370
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA polymerase II CTD phosphatase Rtr1 (predicted)","termid":"PBO:0002370"}


id: GO:0051884
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of timing of anagen, the growth phase of the hair cycle.","definition_xrefs":["GOC:pr","GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of hair follicle maturation","termid":"GO:0048819"},{"relation_name":"regulates","term_name":"anagen","termid":"GO:0042640"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of timing of anagen","synonyms":[{"name":"regulation of anagen","type":"related"}],"termid":"GO:0051884"}


id: PBO:0005367
data:
  {"annotation_feature_type":"gene","cv_name":"disease_associated","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"polycystic liver disease","termid":"PBO:0005367"}


id: PBO:0027150
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_vacuolar_serine_level","termid":"PBO:0027150"}


id: PBO:0081298
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein 79","termid":"PBO:0081298"}


id: PBO:0087945
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Translation initiation factor eIF1A; essential protein that forms a complex with Sui1p (eIF1) and 40S ribosomal subunit and scans for start codons; C-terminus associates with Fun12p (eIF5B); N terminus interacts with eIF2 and eIF3; ortholog of bacterial translation initiation factor IF1","termid":"PBO:0087945"}


id: PR:O94643
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- mis17 gene.","definition_xrefs":["PRO:DNx","UniProtKB:O94643"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"kinetochore protein mis17 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC21.01","synonyms":[{"name":"Spom972h-mis17","type":"exact"},{"name":"sim4 complex subunit mis17 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:O94643"}


id: GO:0001890
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of the placenta over time, from its formation to the mature structure. The placenta is an organ of metabolic interchange between fetus and mother, partly of embryonic origin and partly of maternal origin.","definition_xrefs":["ISBN:068340007X","GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"animal organ development","termid":"GO:0048513"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"placenta development","synonyms":[{"name":"placental development","type":"exact"},{"name":"placentation","type":"exact"}],"termid":"GO:0001890"}


id: FYPO:0002167
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A phenotype observed in the vegetative growth phase of the life cycle in which cells show increased sensitivity to ethyl methanesulfonate. Cells stop growing (and may die) at a concentration of ethyl methanesulfonate that allows wild type cells to grow.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"sensitive to DNA damaging agents","termid":"FYPO:0000266"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000139"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000003"},{"rel_name":"is_a","termid":"FYPO:0002683"}],"interesting_parent_ids":["FYPO:0000139","FYPO:0001985","FYPO:0005447","FYPO:0000003","FYPO:0002683"],"is_obsolete":false,"name":"sensitive to ethyl methanesulfonate","synonyms":[{"name":"hypersensitive to ethyl methanesulfonate","type":"exact"},{"name":"sensitive to EMS","type":"exact"},{"name":"sensitive to ethyl methanesulfonate during mitotic cell cycle","type":"related"},{"name":"sensitive to ethyl methanesulfonate during vegetative growth","type":"exact"},{"name":"sensitive to ethyl methanesulphonate","type":"exact"}],"termid":"FYPO:0002167"}


id: GO:0002295
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which a CD4-positive, alpha-beta T cell becomes committed to becoming a T-helper cell, a CD4-positive, alpha-beta T cell specialized to promote various immunological processes.","definition_xrefs":["GOC:add","ISBN:0781735149"],"direct_ancestors":[{"relation_name":"is_a","term_name":"CD4-positive, alpha-beta T cell lineage commitment","termid":"GO:0043373"},{"relation_name":"part_of","term_name":"T-helper cell differentiation","termid":"GO:0042093"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"T-helper cell lineage commitment","synonyms":[{"name":"T-helper cell fate commitment","type":"exact"},{"name":"Th0 lineage commitment","type":"related"},{"name":"Thp lineage commitment","type":"related"}],"termid":"GO:0002295"}


id: GO:0042902
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process of linking a protein to peptidoglycan via a carboxy terminal threonine carboxyl group through a pentaglycyl peptide to the lysine or diaminopimelic acid of the peptidoglycan.","definition_xrefs":["RESID:AA0345"],"direct_ancestors":[{"relation_name":"is_a","term_name":"peptidoglycan-protein cross-linking","termid":"GO:0018104"},{"relation_name":"is_a","term_name":"peptidyl-threonine modification","termid":"GO:0018210"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0044085"},{"rel_name":"part_of","termid":"GO:0071554"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0044085","GO:0071554","GO:0008150"],"is_obsolete":false,"name":"peptidoglycan-protein cross-linking via L-threonyl-pentaglycyl-murein","termid":"GO:0042902"}


id: GO:0045879
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of smoothened signaling.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of smoothened signaling pathway","termid":"GO:0008589"},{"relation_name":"is_a","term_name":"negative regulation of signal transduction","termid":"GO:0009968"},{"relation_name":"negatively_regulates","term_name":"smoothened signaling pathway","termid":"GO:0007224"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0023052"},{"rel_name":"negatively_regulates","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"negative regulation of smoothened signaling pathway","secondary_identifiers":["GO:0045877"],"synonyms":[{"name":"down regulation of smoothened signaling pathway","type":"exact"},{"name":"down-regulation of smoothened signaling pathway","type":"exact"},{"name":"downregulation of smoothened signaling pathway","type":"exact"},{"name":"inhibition of smoothened signaling pathway","type":"narrow"},{"name":"negative regulation of hedgehog signaling pathway","type":"exact"},{"name":"negative regulation of hh signaling pathway","type":"exact"},{"name":"negative regulation of smoothened activity","type":"related"},{"name":"negative regulation of smoothened by patched","type":"narrow"},{"name":"negative regulation of smoothened receptor activity by patched","type":"related"},{"name":"negative regulation of smoothened signalling pathway","type":"exact"}],"termid":"GO:0045879"}


id: GO:1900305
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of laminaritriose transport.","definition_xrefs":["GOC:TermGenie","GOC:mengo_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of transport","termid":"GO:0051050"},{"relation_name":"is_a","term_name":"regulation of laminaritriose transport","termid":"GO:1900303"},{"relation_name":"positively_regulates","term_name":"laminaritriose transport","termid":"GO:2001097"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"positively_regulates","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0006810","GO:0008150"],"is_obsolete":false,"name":"positive regulation of laminaritriose transport","synonyms":[{"name":"activation of laminaritriose transport","type":"narrow"},{"name":"up regulation of laminaritriose transport","type":"exact"},{"name":"up-regulation of laminaritriose transport","type":"exact"},{"name":"upregulation of laminaritriose transport","type":"exact"}],"termid":"GO:1900305"}


id: PBO:0081948
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc and ring finger 2 pseudogene 2","termid":"PBO:0081948"}


id: PBO:0029054
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_protein_degradation","termid":"PBO:0029054"}


id: PBO:0086474
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Putative mitochondrial protein of unknown function; identified by expression profiling and mass spectrometry","termid":"PBO:0086474"}


id: GO:0014015
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of gliogenesis, the formation of mature glia.","definition_xrefs":["GOC:ef"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of gliogenesis","termid":"GO:0014013"},{"relation_name":"is_a","term_name":"positive regulation of neurogenesis","termid":"GO:0050769"},{"relation_name":"positively_regulates","term_name":"gliogenesis","termid":"GO:0042063"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of gliogenesis","synonyms":[{"name":"activation of gliogenesis","type":"narrow"},{"name":"stimulation of gliogenesis","type":"narrow"},{"name":"up regulation of gliogenesis","type":"exact"},{"name":"up-regulation of gliogenesis","type":"exact"},{"name":"upregulation of gliogenesis","type":"exact"}],"termid":"GO:0014015"}


id: PBO:0049082
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"G protein-coupled receptor 137B","termid":"PBO:0049082"}


id: GO:0090080
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The series of molecular signals generated as a consequence of a fibroblast growth factor receptor binding to one of its physiological ligands resulting in an increase in the rate or frequency of a MAPKKK cascade.","definition_xrefs":["GOC:tb","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"fibroblast growth factor receptor signaling pathway","termid":"GO:0008543"},{"relation_name":"is_a","term_name":"positive regulation of MAPK cascade","termid":"GO:0043410"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0023052"},{"rel_name":"positively_regulates","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"positive regulation of MAPKKK cascade by fibroblast growth factor receptor signaling pathway","synonyms":[{"name":"positive regulation of MAPKKK cascade by fibroblast growth factor receptor signalling pathway","type":"exact"}],"termid":"GO:0090080"}


id: MOD:00174
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts a glycine residue to N-glycyl-glycosylsphingolipidinositolethanolamine.","definition_xrefs":["RESID:AA0165","PubMed:8404891","PubMed:12626404"],"direct_ancestors":[{"relation_name":"is_a","term_name":"glycosylsphingolipidinositolated residue","termid":"MOD:00466"},{"relation_name":"is_a","term_name":"modified glycine residue","termid":"MOD:00908"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"N-glycyl-glycosylsphingolipidinositolethanolamine","synonyms":[{"name":"GSIGly","type":"exact"},{"name":"LIPID GPI-like-anchor amidated glycine","type":"exact"},{"name":"N-glycyl-glycosylsphingolipidinositolethanolamine","type":"exact"}],"termid":"MOD:00174"}


id: GO:0062116
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A chloroplast-derived plastid in which the solid form of phenol is stored.","definition_xrefs":["PMID:24683183"],"direct_ancestors":[{"relation_name":"is_a","term_name":"plastid","termid":"GO:0009536"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005737"}],"interesting_parent_ids":["GO:0005575","GO:0005737"],"is_obsolete":false,"name":"phenyloplast","termid":"GO:0062116"}


id: GO:0033439
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"A triplet codon-amino acid adaptor activity that recognizes an ACA codon.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"triplet codon-amino acid adaptor activity","termid":"GO:0030533"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0060090"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003723"},{"rel_name":"is_a","termid":"GO:0005488"}],"interesting_parent_ids":["GO:0060090","GO:0003723","GO:0003674","GO:0005488"],"is_obsolete":false,"name":"ACA codon-amino acid adaptor activity","synonyms":[{"name":"threonine tRNA","type":"related"}],"termid":"GO:0033439"}


id: GO:0043111
data:
  {"annotated_genes":["SJAG_04671","SJAG_03997","SJAG_04855","SJAG_02724","SJAG_00247","SJAG_03097"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[77092,78810],"is_not":false,"summary":null,"term":"GO:0043111"},{"annotations":[98711],"is_not":false,"rel_names":["regulates"],"summary":null,"term":"GO:1902681"},{"annotations":[98712,94907],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0011000"},{"annotations":[97772,94908,110308],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0031582"},{"annotations":[94909],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0090001"},{"annotations":[97773],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0071807"}]},"cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of DNA replication by impeding the progress of the DNA replication fork. Replication fork arrest is one of the 'quality control' processes ensuring that DNA-dependent DNA replication occurs correctly. DNA replication fork arrest during DNA-dependent DNA replication is not known to occur outside of cases where a replication error needs to be prevented or corrected.","definition_xrefs":["GOC:jl","PMID:14645529","GOC:pr"],"direct_ancestors":[{"relation_name":"is_a","term_name":"DNA-templated DNA replication maintenance of fidelity","termid":"GO:0045005"},{"relation_name":"is_a","term_name":"negative regulation of DNA-templated DNA replication","termid":"GO:2000104"}],"gene_count":6,"genes_by_uniquename":{"SJAG_00247":null,"SJAG_02724":null,"SJAG_03097":null,"SJAG_03997":null,"SJAG_04671":null,"SJAG_04855":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0006259"},{"rel_name":"part_of","termid":"GO:0006260"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0006260"},{"rel_name":"part_of","termid":"GO:0006259"},{"rel_name":"negatively_regulates","termid":"GO:0006259"},{"rel_name":"is_a","termid":"GO:0006259"},{"rel_name":"negatively_regulates","termid":"GO:0006260"}],"interesting_parent_ids":["GO:0006259","GO:0006260","GO:0008150"],"is_obsolete":false,"name":"replication fork arrest","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"synonyms":[{"name":"negative regulation of DNA replication at replication fork barrier","type":"exact"},{"name":"replication fork blocking","type":"exact"},{"name":"replication fork stalling","type":"exact"}],"termid":"GO:0043111","terms_by_termid":{"GO:0011000":null,"GO:0031582":null,"GO:0043111":null,"GO:0071807":null,"GO:0090001":null,"GO:1902681":null}}


id: PBO:0018028
data:
  {"annotation_feature_type":"gene","cv_name":"complementation","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"does not functionally complement S. cerevisiae POL2","termid":"PBO:0018028"}


id: GO:0075522
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Process by which viral mRNA translation is initiated, where a domain in the 5' untranslated region (UTR) of the viral mRNA called an internal ribosome entry site (IRES) binds the host 43S preinitiation complex, circumventing regular cap-dependent translation initiation.","definition_xrefs":["GOC:jl","VZ:867","GOC:bf","PMID:19632368"],"direct_ancestors":[{"relation_name":"is_a","term_name":"viral process","termid":"GO:0016032"},{"relation_name":"part_of","term_name":"viral translation","termid":"GO:0019081"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"IRES-dependent viral translational initiation","termid":"GO:0075522"}


id: PBO:0091683
data:
  {"annotation_feature_type":"gene","cv_name":"name_description","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RecA-Like Protein","termid":"PBO:0091683"}


id: FYPO:0000665
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which the observed rate of a peptidase activity is normal (i.e. indistinguishable from wild type).","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal catalytic activity","termid":"FYPO:0000660"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000654"},{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0000257"}],"interesting_parent_ids":["FYPO:0000652","FYPO:0000654","FYPO:0000257"],"is_obsolete":false,"name":"normal peptidase activity","synonyms":[{"name":"normal protease activity","type":"exact"}],"termid":"FYPO:0000665"}


id: GO:2000315
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of fibroblast growth factor receptor signaling pathway involved in neural plate anterior/posterior pattern formation.","definition_xrefs":["GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of fibroblast growth factor receptor signaling pathway","termid":"GO:0045743"},{"relation_name":"is_a","term_name":"positive regulation of developmental process","termid":"GO:0051094"},{"relation_name":"is_a","term_name":"positive regulation of multicellular organismal process","termid":"GO:0051240"},{"relation_name":"is_a","term_name":"regulation of fibroblast growth factor receptor signaling pathway involved in neural plate anterior/posterior pattern formation","termid":"GO:2000313"},{"relation_name":"positively_regulates","term_name":"fibroblast growth factor receptor signaling pathway involved in neural plate anterior/posterior pattern formation","termid":"GO:0060825"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"positively_regulates","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"positive regulation of fibroblast growth factor receptor signaling pathway involved in neural plate anterior/posterior pattern formation","synonyms":[{"name":"positive regulation of fibroblast growth factor receptor signalling pathway involved in neural plate anterior/posterior pattern formation","type":"exact"}],"termid":"GO:2000315"}


id: GO:0047754
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 3'-phospho-5'-adenylyl sulfate + choline = adenosine 3',5'-diphosphate + choline sulfate + H+.","definition_xrefs":["EC:2.8.2.6","RHEA:21984"],"direct_ancestors":[{"relation_name":"is_a","term_name":"sulfotransferase activity","termid":"GO:0008146"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016782"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016740","GO:0016782"],"is_obsolete":false,"name":"choline sulfotransferase activity","secondary_identifiers":["MetaCyc:CHOLINE-SULFOTRANSFERASE-RXN","KEGG_REACTION:R01027"],"synonyms":[{"name":"3'-phosphoadenylyl-sulfate:choline sulfotransferase activity","type":"related"},{"name":"choline sulphokinase activity","type":"related"},{"name":"choline sulphotransferase activity","type":"exact"}],"termid":"GO:0047754"}


id: PBO:0070983
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L19 pseudogene 7","termid":"PBO:0070983"}


id: GO:0051504
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A branched pathway that produces the precursors to four structurally distinct types of polycyclic diterpenes. The pathway starts with the cyclization of geranylgeranyl diphosphate into ent-copalyl diphosphate and syn-copalyl diphosphate. The catalytic conversion by diterpene cyclases of these two compounds produces the four diterpene hydrocarbons which are precursors to the four structurally distinct classes of diterpene phytoalexins.","definition_xrefs":["MetaCyc:PWY-2981"],"direct_ancestors":[{"relation_name":"is_a","term_name":"terpene biosynthetic process","termid":"GO:0046246"},{"relation_name":"part_of","term_name":"diterpene phytoalexin biosynthetic process","termid":"GO:0051502"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006629"},{"rel_name":"part_of","termid":"GO:0006629"},{"rel_name":"part_of","termid":"GO:0019748"}],"interesting_parent_ids":["GO:0006629","GO:0019748","GO:0008150"],"is_obsolete":false,"name":"diterpene phytoalexin precursor biosynthetic process pathway","synonyms":[{"name":"diterpene phytoalexin precursor anabolism pathway","type":"exact"},{"name":"diterpene phytoalexin precursor formation pathway","type":"exact"},{"name":"diterpene phytoalexin precursor synthesis pathway","type":"exact"}],"termid":"GO:0051504"}


id: GO:1900579
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving (17Z)-protosta-17(20),24-dien-3beta-ol.","definition_xrefs":["GOC:TermGenie","GOC:di"],"direct_ancestors":[{"relation_name":"is_a","term_name":"steroid metabolic process","termid":"GO:0008202"},{"relation_name":"is_a","term_name":"tetracyclic triterpenoid metabolic process","termid":"GO:0010685"},{"relation_name":"is_a","term_name":"secondary metabolic process","termid":"GO:0019748"},{"relation_name":"is_a","term_name":"secondary alcohol metabolic process","termid":"GO:1902652"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006629"},{"rel_name":"is_a","termid":"GO:0019748"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0008150","GO:0019748","GO:0044281","GO:0006629"],"is_obsolete":false,"name":"(17Z)-protosta-17(20),24-dien-3beta-ol metabolic process","synonyms":[{"name":"(17Z)-protosta-17(20),24-dien-3beta-ol metabolism","type":"exact"}],"termid":"GO:1900579"}


id: PR:O59763
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- oca2 gene.","definition_xrefs":["UniProtKB:O59763","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"serine/threonine-protein kinase oca2 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC1020.10","synonyms":[{"name":"Spom972h-oca2","type":"exact"}],"termid":"PR:O59763"}


id: FYPO:0001416
data:
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id: PR:O94389
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id: PBO:0062591
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id: PBO:0050437
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id: GO:0110034
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id: PBO:0072119
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id: PBO:0109518
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id: PBO:0083584
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id: GO:1990113
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id: GO:0009057
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id: PBO:0017508
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"conserved fungal protein associated with stress granule","termid":"PBO:0017508"}


id: GO:2000051
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of non-canonical Wnt signaling pathway.","definition_xrefs":["GOC:obol","GOC:yaf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of Wnt signaling pathway","termid":"GO:0030178"},{"relation_name":"is_a","term_name":"regulation of non-canonical Wnt signaling pathway","termid":"GO:2000050"},{"relation_name":"negatively_regulates","term_name":"non-canonical Wnt signaling pathway","termid":"GO:0035567"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0023052"},{"rel_name":"negatively_regulates","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"negative regulation of non-canonical Wnt signaling pathway","synonyms":[{"name":"negative regulation of beta-catenin-independent Wnt receptor signaling pathway","type":"exact"},{"name":"negative regulation of non-canonical Wnt receptor signaling pathway","type":"exact"},{"name":"negative regulation of non-canonical Wnt receptor signalling pathway","type":"exact"},{"name":"negative regulation of non-canonical Wnt-activated signaling pathway","type":"exact"}],"termid":"GO:2000051"}


id: PBO:0045470
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dopamine receptor D5 pseudogene 2","termid":"PBO:0045470"}


id: PBO:0078283
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-Cys (anticodon GCA) 16-1","termid":"PBO:0078283"}


id: PBO:0045434
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DPY19L2 pseudogene 2","termid":"PBO:0045434"}


id: PBO:0083435
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Dubious open reading frame; unlikely to encode a functional protein, based on available experimental and comparative sequence data; partially overlaps the uncharacterized ORF YLR040C","termid":"PBO:0083435"}


id: PBO:0017021
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"box H/ACA small nucleolar RNA 20/snR35","termid":"PBO:0017021"}


id: GO:0002056
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to cytosine.","definition_xrefs":["GOC:vw","GOC:hjd"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pyrimidine nucleobase binding","termid":"GO:0002061"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0005488","GO:0003674"],"is_obsolete":false,"name":"cytosine binding","termid":"GO:0002056"}


id: GO:1900213
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of mesenchymal cell apoptotic process involved in metanephros development.","definition_xrefs":["GOC:mtg_apoptosis","GOC:mtg_kidney_jan10","GOC:yaf","GOC:TermGenie","PMID:17314325"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of mesenchymal cell apoptotic process involved in metanephros development","termid":"GO:1900211"},{"relation_name":"is_a","term_name":"positive regulation of apoptotic process involved in development","termid":"GO:1904747"},{"relation_name":"is_a","term_name":"positive regulation of mesenchymal cell apoptotic process","termid":"GO:2001055"},{"relation_name":"positively_regulates","term_name":"mesenchymal cell apoptotic process involved in metanephros development","termid":"GO:1900200"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of mesenchymal cell apoptotic process involved in metanephros development","synonyms":[{"name":"activation of mesenchymal cell apoptosis involved in metanephros development","type":"narrow"},{"name":"positive regulation of mesenchymal cell apoptosis involved in metanephros development","type":"narrow"},{"name":"up regulation of mesenchymal cell apoptosis involved in metanephros development","type":"exact"},{"name":"up-regulation of mesenchymal cell apoptosis involved in metanephros development","type":"exact"},{"name":"upregulation of mesenchymal cell apoptosis involved in metanephros development","type":"exact"}],"termid":"GO:1900213"}


id: MOD:00655
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively replaces a residue sulfanyl group with an myristoylsulfanyl group.","definition_xrefs":["PubMed:18688235"],"direct_ancestors":[{"relation_name":"is_a","term_name":"myristoylated residue","termid":"MOD:00438"},{"relation_name":"is_a","term_name":"S-acylated residue","termid":"MOD:00672"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:00649"}],"interesting_parent_ids":["MOD:00649"],"is_obsolete":false,"name":"S-myristoylated residue","synonyms":[{"name":"SMyrRes","type":"exact"}],"termid":"MOD:00655"}


id: PBO:0074971
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nucleolar RNA, C/D box 114-13","termid":"PBO:0074971"}


id: PBO:0017004
data:
  {"annotation_feature_type":"gene","cv_name":"name_description","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"G1 Arrest Defective","termid":"PBO:0017004"}


id: GO:0072488
data:
  {"annotated_genes":["SJAG_04136","SJAG_04731"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[70115,74696],"is_not":false,"summary":null,"term":"GO:0072488"}]},"cv_name":"biological_process","definition":"The process in which ammonium is transported across a membrane. Ammonium is the cation NH4+.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nitrogen compound transport","termid":"GO:0071705"},{"relation_name":"is_a","term_name":"inorganic cation transmembrane transport","termid":"GO:0098662"}],"gene_count":2,"genes_by_uniquename":{"SJAG_04136":null,"SJAG_04731":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0055085"},{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0055085","GO:0006810","GO:0008150","GO:0051179"],"is_obsolete":false,"name":"ammonium transmembrane transport","references_by_uniquename":{"GO_REF:0000033":null},"secondary_identifiers":["GO:0015696"],"synonyms":[{"name":"ammonia transport","type":"broad"},{"name":"ammonium membrane transport","type":"exact"},{"name":"ammonium transport","type":"broad"}],"termid":"GO:0072488","terms_by_termid":{"GO:0072488":null}}


id: GO:0033276
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A protein complex that does not contain either a TATA-binding protein (TBP) or a TBP-like factor, but is composed of several TAFIIs and other proteins, including a histone acetyltransferase. This complex is able to nucleate transcription initiation by RNA polymerase II, can mediate transcriptional activation, and has histone acetyltransferase activity.","definition_xrefs":["PMID:9603525","PMID:10373431"],"direct_ancestors":[{"relation_name":"is_a","term_name":"SAGA-type complex","termid":"GO:0070461"},{"relation_name":"is_a","term_name":"RNA polymerase II transcription regulator complex","termid":"GO:0090575"},{"relation_name":"part_of","term_name":"RNA polymerase II, holoenzyme","termid":"GO:0016591"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005634"},{"rel_name":"part_of","termid":"GO:0005694"},{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0005654"}],"interesting_parent_ids":["GO:0005634","GO:0032991","GO:0005575","GO:0005654","GO:0005694"],"is_obsolete":false,"name":"transcription factor TFTC complex","termid":"GO:0033276"}


id: GO:0031241
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The side (leaflet) of the outer membrane that faces the periplasm of the cell.","definition_xrefs":["GOC:mlg","GOC:mtg_sensu"],"direct_ancestors":[{"relation_name":"is_a","term_name":"side of membrane","termid":"GO:0098552"},{"relation_name":"part_of","term_name":"cell outer membrane","termid":"GO:0009279"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"periplasmic side of cell outer membrane","synonyms":[{"name":"internal leaflet of cell outer membrane","type":"exact"},{"name":"internal side of cell outer membrane","type":"exact"},{"name":"internal side of outer membrane","type":"exact"}],"termid":"GO:0031241"}


id: GO:0004467
data:
  {"annotated_genes":["SJAG_03471","SJAG_03909"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[101040,108739],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0090432"},{"annotations":[101041],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0090434"},{"annotations":[101042],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0090433"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: a long-chain fatty acid + ATP + CoA = a long-chain fatty acyl-CoA + AMP + diphosphate. A long-chain fatty acid has an aliphatic tail containing 13 to 22 carbons.","definition_xrefs":["RHEA:15421"],"direct_ancestors":[{"relation_name":"is_a","term_name":"fatty acid ligase activity","termid":"GO:0015645"},{"relation_name":"is_a","term_name":"CoA-ligase activity","termid":"GO:0016405"}],"gene_count":2,"genes_by_uniquename":{"SJAG_03471":null,"SJAG_03909":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016874"}],"interesting_parent_ids":["GO:0003674","GO:0016874","GO:0003824"],"is_obsolete":false,"name":"long-chain fatty acid-CoA ligase activity","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["Reactome:R-HSA-2046098","Reactome:R-HSA-2046085","Reactome:R-HSA-193424","Reactome:R-HSA-193743","Reactome:R-HSA-201035","GO:0003996","EC:6.2.1.3","Reactome:R-HSA-193711","Reactome:R-HSA-193766","Reactome:R-HSA-5696004","MetaCyc:RXN-7904","UM-BBD_enzymeID:e0025","Reactome:R-HSA-193401","MetaCyc:PWY-5143","Reactome:R-HSA-193727","Reactome:R-HSA-193407","Reactome:R-HSA-9734535","Reactome:R-HSA-192137","Reactome:R-HSA-159425","Reactome:R-HSA-548843"],"synonyms":[{"name":"LCFA synthetase activity","type":"related"},{"name":"acyl-CoA ligase activity","type":"related"},{"name":"acyl-CoA synthetase activity","type":"related"},{"name":"acyl-activating enzyme activity","type":"broad"},{"name":"fatty acid thiokinase (long-chain) activity","type":"related"},{"name":"lignoceroyl-CoA synthase activity","type":"related"},{"name":"long chain fatty acyl-CoA synthetase activity","type":"related"},{"name":"long-chain acyl CoA synthetase activity","type":"related"},{"name":"long-chain acyl-CoA synthetase activity","type":"exact"},{"name":"long-chain acyl-coenzyme A synthetase activity","type":"related"},{"name":"long-chain fatty acid activation","type":"related"},{"name":"long-chain fatty acyl coenzyme A synthetase activity","type":"related"},{"name":"long-chain-fatty-acid-CoA ligase activity","type":"exact"},{"name":"long-chain-fatty-acyl-CoA synthetase activity","type":"exact"},{"name":"pristanoyl-CoA synthetase","type":"narrow"},{"name":"stearoyl-CoA synthetase","type":"narrow"},{"name":"thiokinase","type":"related"}],"termid":"GO:0004467","terms_by_termid":{"GO:0090432":null,"GO:0090433":null,"GO:0090434":null}}


id: PBO:0075702
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SREK1IP1 pseudogene 2","termid":"PBO:0075702"}


id: FYPO:0006237
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A physical cellular phenotype observed in the vegetative growth phase of the life cycle in which cells contain a normal (i.e. indistinguishable from wild type) number of half-mer polysomes in the cytosol. A half-mer polysome is a complex consisting of an mRNA bound to a single small ribosomal subunit, followed by one or more complete bound ribosomes.","definition_xrefs":["PMID:18065650","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal level of macromolecular complex","termid":"FYPO:0006235"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000257"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001320","FYPO:0000257"],"is_obsolete":false,"name":"normal cytosolic half-mer polysome level","synonyms":[{"name":"cytosolic half-mer polysomes present at normal level","type":"exact"},{"name":"normal cytosolic half-mer polysome level during mitotic cell cycle","type":"related"},{"name":"normal cytosolic half-mer polysome level during vegetative growth","type":"exact"},{"name":"normal cytosolic halfmer polysome level","type":"exact"},{"name":"normal level of cytosolic half-mer polysomes","type":"related"}],"termid":"FYPO:0006237"}


id: GO:0051033
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Enables the transfer of RNA, ribonucleic acid, from one side of a membrane to the other.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nucleic acid transmembrane transporter activity","termid":"GO:0051032"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0005215","GO:0003674","GO:0022857"],"is_obsolete":false,"name":"RNA transmembrane transporter activity","secondary_identifiers":["Reactome:R-HSA-203906"],"termid":"GO:0051033"}


id: PBO:0041556
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chromosome 19 open reading frame 44","termid":"PBO:0041556"}


id: PBO:0073887
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"solute carrier family 12 member 4","termid":"PBO:0073887"}


id: GO:0010360
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate, or extent of the anion channel activity.","definition_xrefs":["PMID:17319842"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of anion channel activity","termid":"GO:0010359"},{"relation_name":"is_a","term_name":"negative regulation of ion transmembrane transporter activity","termid":"GO:0032413"},{"relation_name":"is_a","term_name":"negative regulation of anion transmembrane transport","termid":"GO:1903960"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"negatively_regulates","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"regulates","termid":"GO:0055085"},{"rel_name":"negatively_regulates","termid":"GO:0055085"}],"interesting_parent_ids":["GO:0006810","GO:0055085","GO:0008150"],"is_obsolete":false,"name":"negative regulation of anion channel activity","termid":"GO:0010360"}


id: PBO:0059170
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"myelin protein zero like 1","termid":"PBO:0059170"}


id: PBO:0057006
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mir-99a-let-7c cluster host gene","termid":"PBO:0057006"}


id: GO:0002187
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"An octomeric protein complex having creatine kinase activity.","definition_xrefs":["PMID:16236486"],"direct_ancestors":[{"relation_name":"is_a","term_name":"creatine kinase complex","termid":"GO:0002185"},{"relation_name":"is_a","term_name":"mitochondrial protein-containing complex","termid":"GO:0098798"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0005739"}],"interesting_parent_ids":["GO:0005737","GO:0005739","GO:0005575","GO:0032991"],"is_obsolete":false,"name":"mitochondrial creatine kinase complex","termid":"GO:0002187"}


id: PBO:0059302
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial ribosomal protein L49 pseudogene 1","termid":"PBO:0059302"}


id: GO:0050789
data:
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id: PBO:0000534
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id: GO:0032124
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id: GO:0042544
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  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of melibiose, the disaccharide 6-O-alpha-D-galactopyranosyl-D-glucose.","definition_xrefs":["ISBN:0198506732","GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"melibiose metabolic process","termid":"GO:0005994"},{"relation_name":"is_a","term_name":"disaccharide biosynthetic process","termid":"GO:0046351"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005975"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0005975","GO:0008150"],"is_obsolete":false,"name":"melibiose biosynthetic process","synonyms":[{"name":"melibiose anabolism","type":"exact"},{"name":"melibiose biosynthesis","type":"exact"},{"name":"melibiose formation","type":"exact"},{"name":"melibiose synthesis","type":"exact"}],"termid":"GO:0042544"}


id: PBO:0002011
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id: GO:0071696
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id: PBO:0049985
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  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"histone H4 transcription factor","termid":"PBO:0049985"}


id: FYPO:0002399
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  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A physical cellular phenotype in which the amount, distribution, or morphology of all or part of the microtubule cytoskeleton is abnormal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal cytoskeleton","termid":"FYPO:0002397"},{"relation_name":"output_of","term_name":"abnormal microtubule cytoskeleton organization","termid":"FYPO:0000054"}],"gene_count":0,"genotype_count":0,"in_subsets":["fypo_slim"],"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"output_of","termid":"FYPO:0000054"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"output_of","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0000054","FYPO:0000002","FYPO:0005447","FYPO:0001985"],"is_obsolete":false,"name":"abnormal microtubule cytoskeleton","synonyms":[{"name":"abnormal microtubule cytoskeleton physical object quality","type":"exact"},{"name":"disorganized microtubule cytoskeleton","type":"related"}],"termid":"FYPO:0002399"}


id: GO:1902688
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  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of NAD metabolic process.","definition_xrefs":["GO_REF:0000058","GOC:TermGenie","PMID:19846558","GOC:di"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of purine nucleotide metabolic process","termid":"GO:1900542"},{"relation_name":"regulates","term_name":"NAD metabolic process","termid":"GO:0019674"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0055086"},{"rel_name":"regulates","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0055086","GO:0044281","GO:0008150"],"is_obsolete":false,"name":"regulation of NAD metabolic process","synonyms":[{"name":"regulation of NAD (oxidized) metabolic process","type":"exact"},{"name":"regulation of NAD (oxidized) metabolism","type":"exact"},{"name":"regulation of NAD metabolism","type":"exact"},{"name":"regulation of NAD phosphorylation and dephosphorylation","type":"narrow"},{"name":"regulation of nicotinamide adenine dinucleotide metabolic process","type":"exact"},{"name":"regulation of nicotinamide adenine dinucleotide metabolism","type":"exact"},{"name":"regulation of oxidized NAD metabolic process","type":"exact"},{"name":"regulation of oxidized NAD metabolism","type":"exact"},{"name":"regulation of oxidized nicotinamide adenine dinucleotide metabolic process","type":"exact"},{"name":"regulation of oxidized nicotinamide adenine dinucleotide metabolism","type":"exact"}],"termid":"GO:1902688"}


id: FYPO:0002248
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  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which occurrence of mannose binding by a gene product (usually a protein) in a mutant is increased. The affected gene product may be encoded by the mutated gene, or by a different gene.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal monosaccharide binding","termid":"FYPO:0002245"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0000707"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000652","FYPO:0000707"],"is_obsolete":false,"name":"increased mannose binding","termid":"FYPO:0002248"}


id: PBO:0089250
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  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CCAAT-binding factor, Noc1 related","termid":"PBO:0089250"}


id: PBO:0046578
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  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"endogenous retrovirus group K member 20","termid":"PBO:0046578"}


id: PBO:0044876
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DENN domain containing 5A","termid":"PBO:0044876"}


id: GO:0047812
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  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: acetyl-CoA + a D-amino acid = CoA + an N-acetyl-D-amino-acid.","definition_xrefs":["MetaCyc:D-AMINO-ACID-N-ACETYLTRANSFERASE-RXN","EC:2.3.1.36"],"direct_ancestors":[{"relation_name":"is_a","term_name":"N-acetyltransferase activity","termid":"GO:0008080"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016746"}],"interesting_parent_ids":["GO:0016746","GO:0003674","GO:0016740","GO:0003824"],"is_obsolete":false,"name":"D-amino-acid N-acetyltransferase activity","secondary_identifiers":["RHEA:20704"],"synonyms":[{"name":"D-amino acid acetyltransferase activity","type":"related"},{"name":"D-amino acid-alpha-N-acetyltransferase activity","type":"related"},{"name":"acetyl-CoA:D-amino-acid N-acetyltransferase activity","type":"related"}],"termid":"GO:0047812"}


id: PBO:0085305
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  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Phosphatase and transcription/RNA-processing factor; associates with TFIIB and cleavage/polyadenylation factor Pta1p; exhibits phosphatase activity on serine-5 and serine-7 of the RNA polymerase II C-terminal domain; affects start site selection and transcriptional read through in vivo","termid":"PBO:0085305"}


id: GO:0061251
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  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of a mesonephric glomerular epithelial cell over time, from its formation to the mature structure. Mesonephric glomerular epithelial cells are specialized epithelial cells that form part of the mesonephric glomerulus; there are two types, mesonephric glomerular parietal epithelial cells and mesonephric glomerular visceral epithelial cells.","definition_xrefs":["GOC:mtg_kidney_jan10"],"direct_ancestors":[{"relation_name":"is_a","term_name":"glomerular epithelial cell development","termid":"GO:0072310"},{"relation_name":"part_of","term_name":"mesonephric glomerular epithelial cell differentiation","termid":"GO:0061250"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"mesonephric glomerular epithelial cell development","termid":"GO:0061251"}


id: PR:O74739
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  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PANTHER:PTHR12143:SF2","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC1709.14","secondary_identifiers":["UniProtKB:O74739"],"synonyms":[{"name":"PNGase (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"SPBC1709.14","type":"related"},{"name":"Spom972h-NGLY1","type":"exact"},{"name":"peptide:N-glycanase 1 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:O74739"}


id: GO:0061337
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id: PBO:0080493
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"von Willebrand factor C domain containing 2 like","termid":"PBO:0080493"}


id: GO:0044445
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"OBSOLETE. Any constituent part of cytosol, that part of the cytoplasm that does not contain membranous or particulate subcellular components.","definition_xrefs":["GOC:jl"],"gene_count":0,"genotype_count":0,"name":"obsolete cytosolic part (obsolete GO:0044445)","synonyms":[{"name":"cytosol component","type":"exact"}],"termid":"GO:0044445"}


id: GO:0034376
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which a discoidal high-density lipoprotein (HDL) particle acquires additional lipid or protein molecules, and cholesterol in the particle is converted to tightly bound cholesterol esters by the action of phosphatidylcholine-sterol O-acyltransferase (lecithin cholesterol acyltransferase; LCAT), resulting in the formation of a spherical HDL particle.","definition_xrefs":["GOC:BHF","GOC:mah","GOC:pde"],"direct_ancestors":[{"relation_name":"is_a","term_name":"high-density lipoprotein particle remodeling","termid":"GO:0034375"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"conversion of discoidal high-density lipoprotein particle to spherical high-density lipoprotein particle","synonyms":[{"name":"conversion of discoidal HDL to spherical HDL","type":"exact"},{"name":"discoidal HDL remodeling","type":"related"},{"name":"discoidal high-density lipoprotein remodeling","type":"related"}],"termid":"GO:0034376"}


id: GO:0048730
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which the anatomical structures of the epidermis are generated and organized. The epidermis is the outer epithelial layer of an animal, it may be a single layer that produces an extracellular material (e.g. the cuticle of arthropods) or a complex stratified squamous epithelium, as in the case of many vertebrate species.","definition_xrefs":["UBERON:0001003","GOC:jid"],"direct_ancestors":[{"relation_name":"is_a","term_name":"morphogenesis of an epithelium","termid":"GO:0002009"},{"relation_name":"part_of","term_name":"epidermis development","termid":"GO:0008544"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"epidermis morphogenesis","synonyms":[{"name":"hypodermis morphogenesis","type":"related"}],"termid":"GO:0048730"}


id: PBO:0016526
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cysteine synthase-like protein Cys12","termid":"PBO:0016526"}


id: PBO:0066699
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"required for meiotic nuclear division 5 homolog B","termid":"PBO:0066699"}


id: GO:0099504
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A biological process in which synaptic vesicles are loaded with neurotransmitters, move to the active zone, exocytose and are then recycled via endocytosis, ultimately leading to reloading with neurotransmitters.","definition_xrefs":["GOC:aruk","GOC:bc","PMID:15217342"],"direct_ancestors":[{"relation_name":"is_a","term_name":"establishment of localization in cell","termid":"GO:0051649"},{"relation_name":"is_a","term_name":"vesicle-mediated transport in synapse","termid":"GO:0099003"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0016192"}],"interesting_parent_ids":["GO:0008150","GO:0051179","GO:0016192","GO:0006810"],"is_obsolete":false,"name":"synaptic vesicle cycle","termid":"GO:0099504"}


id: PATO:0001857
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A shape quality in a bearer by virtue of the bearer's curving inward.","definition_xrefs":["WordNet:WordNet"],"direct_ancestors":[{"relation_name":"is_a","term_name":"concavity","termid":"PATO:0002005"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"concave","termid":"PATO:0001857"}


id: PBO:0043923
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CROCC pseudogene 2","termid":"PBO:0043923"}


id: PBO:0050554
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"hemopexin","termid":"PBO:0050554"}


id: GO:0043180
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process involved in the generation of rhythmic, synchronous inhibitory synaptic inputs in a neural circuit.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"rhythmic synaptic transmission","termid":"GO:0060024"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"rhythmic inhibition","termid":"GO:0043180"}


id: PATO:0001654
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"An alignment quality inhering in a bearer by virtue of the bearer's being in a improper spatial positioning with respect to an additional entity.","definition_xrefs":["PATOC:GVG"],"direct_ancestors":[{"relation_name":"is_a","term_name":"alignment","termid":"PATO:0001652"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"misaligned with","synonyms":[{"name":"misaligned ","type":"exact"},{"name":"unaligned with","type":"exact"}],"termid":"PATO:0001654"}


id: PBO:0049681
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"HuR (ELAVL1) associated fibroblast migratory lncRNA","termid":"PBO:0049681"}


id: FYPO:0006813
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which trimethylation of lysine at position 9 of histone H3 in centromere inner repeat regions does not occur.","definition_xrefs":["PMID:30652128","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abolished histone H3-K9 methylation during vegetative growth","termid":"FYPO:0002566"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0002274"},{"rel_name":"is_a","termid":"FYPO:0002494"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0002494","FYPO:0001320","FYPO:0005447","FYPO:0000002","FYPO:0002274","FYPO:0001985"],"is_obsolete":false,"name":"abolished histone H3-K9 trimethylation at centromere inner repeat during vegetative growth","synonyms":[{"name":"abolished histone H3 K9 trimethylation at centromere inner repeat during vegetative growth","type":"exact"},{"name":"abolished histone H3-K9 trimethylation at centromere CENP-A containing region during vegetative growth","type":"related"},{"name":"abolished histone H3-K9 trimethylation at centromere imr during vegetative growth","type":"exact"},{"name":"abolished histone H3-K9 trimethylation at centromere inner repeat during mitotic cell cycle","type":"related"},{"name":"abolished histone H3-K9 trimethylation at centromere inner repeat region during vegetative growth","type":"exact"},{"name":"abolished histone H3K9me3 at centromere inner repeat during vegetative growth","type":"exact"},{"name":"abolished histone lysine H3 K9 trimethylation at centromere inner repeat during vegetative growth","type":"exact"},{"name":"histone H3-K9 trimethylation abolished at centromere inner repeat during vegetative growth","type":"exact"},{"name":"histone H3-K9 trimethylation absent at centromere inner repeat during vegetative growth","type":"exact"}],"termid":"FYPO:0006813"}


id: GO:0005934
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The end of a cellular bud distal to the site of attachment to the mother cell.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"site of polarized growth","termid":"GO:0030427"},{"relation_name":"part_of","term_name":"cellular bud","termid":"GO:0005933"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"cellular bud tip","termid":"GO:0005934"}


id: GO:0035792
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A postsynaptic membrane that is part of a host cell. A postsynaptic membrane is a specialized area of membrane facing the presynaptic membrane on the tip of the nerve ending and separated from it by a minute cleft (the synaptic cleft). Neurotransmitters transmit the signal across the synaptic cleft to the postsynaptic membrane.","definition_xrefs":["GOC:ecd"],"direct_ancestors":[{"relation_name":"is_a","term_name":"host cell part","termid":"GO:0033643"},{"relation_name":"part_of","term_name":"host cell membrane","termid":"GO:0033644"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"host cell postsynaptic membrane","synonyms":[{"name":"other organism post-synaptic membrane","type":"exact"},{"name":"other organism postsynaptic membrane","type":"related"}],"termid":"GO:0035792"}


id: PBO:0071344
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L29 pseudogene 2","termid":"PBO:0071344"}


id: GO:0030428
data:
  {"annotated_genes":["SJAG_01196","SJAG_00652","SJAG_01718","SJAG_05001","SJAG_04901","SJAG_02215","SJAG_03625","SJAG_02916","SJAG_00669","SJAG_00667","SJAG_04776","SJAG_03705","SJAG_03748","SJAG_03436","SJAG_03753","SJAG_03655","SJAG_04690","SJAG_01787","SJAG_01855","SJAG_01181","SJAG_02166","SJAG_02379","SJAG_01171","SJAG_04666","SJAG_00442","SJAG_01863","SJAG_00514","SJAG_03379","SJAG_03704","SJAG_04668","SJAG_01754","SJAG_05285","SJAG_02022","SJAG_00610","SJAG_04771","SJAG_01799","SJAG_04322","SJAG_03581","SJAG_01453","SJAG_01888","SJAG_02169","SJAG_03453","SJAG_01774","SJAG_01456","SJAG_02222"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[92781,98127,83304,98330,98967,113102,113114,89193,88062,95261,102647,86535,109673,100131,84053,83323,87503,105478,84798,95705,90196,84237,85451,86467,71576,91264,97441,106705,70331,101536,101709,89364,88045,108402,97442,106327,86448,109345,111817,87914,96452,86420,92446],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0000935"},{"annotations":[95665,111080],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0000936"}]},"cv_name":"cellular_component","definition":"A structure composed of peptidoglycan and often chitin in addition to other materials. It usually forms perpendicular to the long axis of a cell or hypha and grows centripetally from the cell wall to the center of the cell and often functions in the compartmentalization of a cell into two daughter cells.","definition_xrefs":["GOC:clt","ISBN:0471940526"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular anatomical entity","termid":"GO:0110165"}],"gene_count":45,"genes_by_uniquename":{"SJAG_00442":null,"SJAG_00514":null,"SJAG_00610":null,"SJAG_00652":null,"SJAG_00667":null,"SJAG_00669":null,"SJAG_01171":null,"SJAG_01181":null,"SJAG_01196":null,"SJAG_01453":null,"SJAG_01456":null,"SJAG_01718":null,"SJAG_01754":null,"SJAG_01774":null,"SJAG_01787":null,"SJAG_01799":null,"SJAG_01855":null,"SJAG_01863":null,"SJAG_01888":null,"SJAG_02022":null,"SJAG_02166":null,"SJAG_02169":null,"SJAG_02215":null,"SJAG_02222":null,"SJAG_02379":null,"SJAG_02916":null,"SJAG_03379":null,"SJAG_03436":null,"SJAG_03453":null,"SJAG_03581":null,"SJAG_03625":null,"SJAG_03655":null,"SJAG_03704":null,"SJAG_03705":null,"SJAG_03748":null,"SJAG_03753":null,"SJAG_04322":null,"SJAG_04666":null,"SJAG_04668":null,"SJAG_04690":null,"SJAG_04771":null,"SJAG_04776":null,"SJAG_04901":null,"SJAG_05001":null,"SJAG_05285":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"cell septum","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"synonyms":[{"name":"cross wall","type":"exact"},{"name":"septum","type":"broad"}],"termid":"GO:0030428","terms_by_termid":{"GO:0000935":null,"GO:0000936":null}}


id: PBO:0074907
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nucleolar RNA, C/D box 78","termid":"PBO:0074907"}


id: PBO:0071793
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RPP38 divergent transcript","termid":"PBO:0071793"}


id: GO:0004813
data:
  {"annotated_genes":["SJAG_01797"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[89354],"is_not":false,"summary":null,"term":"GO:0004813"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: ATP + L-alanine + tRNA(Ala) = AMP + diphosphate + L-alanyl-tRNA(Ala).","definition_xrefs":["EC:6.1.1.7"],"direct_ancestors":[{"relation_name":"is_a","term_name":"aminoacyl-tRNA ligase activity","termid":"GO:0004812"}],"gene_count":1,"genes_by_uniquename":{"SJAG_01797":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0140101"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0140098"},{"rel_name":"is_a","termid":"GO:0016874"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016874","GO:0140101","GO:0140098","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"alanine-tRNA ligase activity","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["MetaCyc:ALANINE--TRNA-LIGASE-RXN","Reactome:R-HSA-380177","Reactome:R-HSA-379864","RHEA:12540"],"synonyms":[{"name":"Ala-tRNA synthetase activity","type":"related"},{"name":"AlaRS","type":"related"},{"name":"L-alanine:tRNAAla ligase (AMP-forming)","type":"related"},{"name":"alanine tRNA synthetase activity","type":"related"},{"name":"alanine transfer RNA synthetase activity","type":"related"},{"name":"alanine translase activity","type":"related"},{"name":"alanine-transfer RNA ligase activity","type":"related"},{"name":"alanyl-tRNA synthetase activity","type":"exact"},{"name":"alanyl-transfer RNA synthetase activity","type":"related"},{"name":"alanyl-transfer ribonucleate synthase activity","type":"related"},{"name":"alanyl-transfer ribonucleate synthetase activity","type":"related"},{"name":"alanyl-transfer ribonucleic acid synthetase activity","type":"related"}],"termid":"GO:0004813","terms_by_termid":{"GO:0004813":null}}


id: PBO:0040949
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"BCL2 interacting protein 3 pseudogene 20","termid":"PBO:0040949"}


id: GO:0045926
data:
  {"annotated_genes":["SJAG_02169"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[86431],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0051517"}]},"cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the rate or extent of growth, the increase in size or mass of all or part of an organism.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of growth","termid":"GO:0040008"},{"relation_name":"is_a","term_name":"negative regulation of biological process","termid":"GO:0048519"},{"relation_name":"negatively_regulates","term_name":"growth","termid":"GO:0040007"}],"gene_count":1,"genes_by_uniquename":{"SJAG_02169":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of growth","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"down regulation of growth","type":"exact"},{"name":"down-regulation of growth","type":"exact"},{"name":"downregulation of growth","type":"exact"},{"name":"inhibition of growth","type":"narrow"}],"termid":"GO:0045926","terms_by_termid":{"GO:0051517":null}}


id: PBO:0079086
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-Tyr (anticodon GTA) 3-1","termid":"PBO:0079086"}


id: SO:0000917
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"An edit to insert a U.","definition_xrefs":["SO:ke"],"gene_count":0,"genotype_count":0,"name":"OBSOLETE SO:0000917 insert_U (obsolete SO:0000917)","synonyms":[{"name":"insert U","type":"exact"}],"termid":"SO:0000917"}


id: GO:0007492
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of the endoderm over time, from its formation to the mature structure. The endoderm is the innermost germ layer that develops into the gastrointestinal tract, the lungs and associated tissues.","definition_xrefs":["GOC:dph","GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"tissue development","termid":"GO:0009888"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"endoderm development","termid":"GO:0007492"}


id: FYPO:0002289
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the phosphorylation of one or more specific proteins, or of specific protein sites, does not occur during a cellular response to osmotic stress.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abolished protein phosphorylation during vegetative growth","termid":"FYPO:0002033"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0002274"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0002494"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0001320","FYPO:0000002","FYPO:0002274","FYPO:0005447","FYPO:0002494"],"is_obsolete":false,"name":"abolished protein phosphorylation during cellular response to osmotic stress","synonyms":[{"name":"abolished protein phosphorylation during cellular response to osmotic stress during mitotic cell cycle","type":"related"},{"name":"abolished protein phosphorylation during cellular response to osmotic stress during vegetative growth","type":"exact"},{"name":"protein phosphorylation abolished during cellular response to osmotic stress","type":"exact"}],"termid":"FYPO:0002289"}


id: PBO:0068760
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U5F small nuclear 5, pseudogene","termid":"PBO:0068760"}


id: CHEBI:23414
data:
  {"annotation_feature_type":"gene","cv_name":"chebi_ontology","definition":"A metal sulfate compound having copper(2+) as the counterion.","direct_ancestors":[{"relation_name":"is_a","term_name":"chemical entity","termid":"CHEBI:24431"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"copper(2+) sulfate","termid":"CHEBI:23414"}


id: GO:0016887
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