# terms

id: PBO:0054799
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2212","termid":"PBO:0054799"}


id: FYPO:0000106
data:
  {"alleles_by_uniquename":{"SJAG_04697:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_04697","name":"gms1delta","uniquename":"SJAG_04697:allele-1"}},"annotation_feature_type":"genotype","cv_annotations":{"single_locus_phenotype":[{"annotations":[116090],"is_not":false,"summary":null,"term":"FYPO:0000106"}]},"cv_name":"fission_yeast_phenotype","definition":"A phenotype observed in the vegetative growth phase of the life cycle in which cells show increased sensitivity to hygromycin B. Cells stop growing (and may die) at a concentration of hygromycin B that allows wild type cells to grow.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased sensitivity to chemical during vegetative growth","termid":"FYPO:0000127"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04697":null},"genotype_count":1,"genotypes_by_uniquename":{"gms1delta":{"display_name":"gms1delta","display_uniquename":"gms1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04697:allele-1","expression":"Null"}]}]}},"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000003"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000139"},{"rel_name":"is_a","termid":"FYPO:0002683"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000003","FYPO:0000139","FYPO:0005447","FYPO:0002683"],"is_obsolete":false,"name":"sensitive to hygromycin B","references_by_uniquename":{"PMID:36058798":null},"single_locus_annotated_genes":["SJAG_04697"],"single_locus_genotype_uniquenames":["gms1delta"],"synonyms":[{"name":"hypersensitive to hygromycin B","type":"exact"},{"name":"sensitive to hygromycin B during mitotic cell cycle","type":"related"},{"name":"sensitive to hygromycin B during vegetative growth","type":"exact"}],"termid":"FYPO:0000106","terms_by_termid":{"FYECO:0000126":null,"FYECO:0000137":null,"FYPO:0000106":null,"FYPO_EXT:0000002":null}}


id: PR:O13903
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"An exosome complex component RRP40 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO00475","PANTHER:PTHR21321:SF1","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"exosome complex component rrp40 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC22A12.12c","secondary_identifiers":["UniProtKB:O13903"],"synonyms":[{"name":"Spom972h-EXOSC3","type":"exact"},{"name":"ribosomal RNA-processing protein 40 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:O13903"}


id: PBO:0035758
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abolished_histone_H3-K4_trimethylation_during_vegetative_growth","termid":"PBO:0035758"}


id: PBO:0031303
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_sensitivity_to_chemical_during_vegetative_growth","termid":"PBO:0031303"}


id: GO:0061507
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to 2',3' cyclic GMP-AMP (cGAMP) nucleotide, a cyclic purine dinucleotide that consists of AMP and GMP units cyclized via 2',5' and 3',5' linkages.","definition_xrefs":["GOC:dph","PMID:23258412","PMID:23910378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"adenyl ribonucleotide binding","termid":"GO:0032559"},{"relation_name":"is_a","term_name":"guanyl ribonucleotide binding","termid":"GO:0032561"},{"relation_name":"is_a","term_name":"anion binding","termid":"GO:0043168"},{"relation_name":"is_a","term_name":"cyclic GMP-AMP binding","termid":"GO:0140702"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005488"}],"interesting_parent_ids":["GO:0003674","GO:0005488"],"is_obsolete":false,"name":"2',3'-cyclic GMP-AMP binding","secondary_identifiers":["GO:0098546"],"synonyms":[{"name":"2',3' cGAMP binding","type":"exact"},{"name":"2',3' cyclic GAMP binding","type":"exact"},{"name":"2',3'-cGAMP binding","type":"exact"},{"name":"2',3'-cyclic GAMP binding","type":"exact"},{"name":"2',5-3',5'-cyclic GMP-AMP binding","type":"exact"},{"name":"c[G(2',5')pA(3',5')p] binding","type":"exact"},{"name":"cyclic-GMP-AMP binding","type":"broad"}],"termid":"GO:0061507"}


id: PBO:0072733
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sphingosine-1-phosphate receptor 3","termid":"PBO:0072733"}


id: GO:0002023
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"An eating behavior process whereby detection of a dietary excess results in a decrease in intake of nutrients.","definition_xrefs":["GOC:pg","GOC:pr","PMID:12161655","PMID:12840200"],"direct_ancestors":[{"relation_name":"is_a","term_name":"eating behavior","termid":"GO:0042755"},{"relation_name":"part_of","term_name":"response to dietary excess","termid":"GO:0002021"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"reduction of food intake in response to dietary excess","termid":"GO:0002023"}


id: MOD:01757
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively replaces an O3-hydrogen atom of a serine residue with the Proteome Sciences TMT6plex-130 reporter+balance group.","definition_xrefs":["PubMed:18688235"],"direct_ancestors":[{"relation_name":"is_a","term_name":"TMT6plex reporter+balance reagent O-acylated residue","termid":"MOD:01719"},{"relation_name":"is_a","term_name":"TMT6plex-130 reporter+balance reagent acylated residue","termid":"MOD:01752"},{"relation_name":"is_a","term_name":"O3-acylated L-serine","termid":"MOD:02003"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:00649"}],"interesting_parent_ids":["MOD:00649"],"is_obsolete":false,"name":"TMT6plex-130 reporter+balance reagent O3-acylated serine","synonyms":[{"name":"3-[(2,6-dimethylpiperidin-1-yl)acetyl]amino)propanoyl","type":"exact"},{"name":"Sixplex Tandem Mass Tag(TM)","type":"related"},{"name":"TMT6plex","type":"related"}],"termid":"MOD:01757"}


id: PBO:0042184
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cyclin B2","termid":"PBO:0042184"}


id: PBO:0039923
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Rho guanine nucleotide exchange factor 25","termid":"PBO:0039923"}


id: GO:0090580
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the hydrolytic removal of phosphoglycolate from the 3'-terminus of a 3'-phosphoglycolate-terminated DNA strand.","definition_xrefs":["PMID:11238902","GOC:rb","GOC:pde"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phosphoric diester hydrolase activity","termid":"GO:0008081"},{"relation_name":"is_a","term_name":"catalytic activity, acting on DNA","termid":"GO:0140097"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0140097"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016788"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016787","GO:0140097","GO:0016788"],"is_obsolete":false,"name":"phosphodiesterase activity, acting on 3'-phosphoglycolate-terminated DNA strands","termid":"GO:0090580"}


id: PBO:0085294
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Pheromone-regulated protein; contains 3 predicted transmembrane segments and an FF sequence, a motif involved in COPII binding; member of DUP240 gene family; PRM9 has a paralog, PRM8, that arose from a segmental duplication","termid":"PBO:0085294"}


id: GO:0052127
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The directed movement of an organism or motile cell on or near its host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction.","definition_xrefs":["GOC:mtg_pamgo_17jul06"],"gene_count":0,"genotype_count":0,"name":"obsolete movement on or near host (obsolete GO:0052127)","termid":"GO:0052127"}


id: GO:0070548
data:
  {"annotated_genes":["SJAG_04728"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[77030],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004360"}]},"cv_name":"molecular_function","definition":"Catalysis of the transfer of an amino group from L-glutamine to an acceptor, usually a 2-oxo acid.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"transaminase activity","termid":"GO:0008483"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04728":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016769"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016769","GO:0016740","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"L-glutamine aminotransferase activity","references_by_uniquename":{"GO_REF:0000033":null},"termid":"GO:0070548","terms_by_termid":{"GO:0004360":null}}


id: MOD:01579
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively replaces the N6'-hydrogen atom of a lysine residue with the Applied Biosystems iTRAQ8plex-121 reporter+balance group.","definition_xrefs":["Unimod:731#K"],"direct_ancestors":[{"relation_name":"is_a","term_name":"iTRAQ8plex-121 reporter+balance reagent acylated residue","termid":"MOD:01577"},{"relation_name":"is_a","term_name":"iTRAQ8plex reporter+balance reagent N-acylated residue","termid":"MOD:01710"},{"relation_name":"is_a","term_name":"N6-acylated L-lysine","termid":"MOD:01875"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:00649"}],"interesting_parent_ids":["MOD:00649"],"is_obsolete":false,"name":"iTRAQ8plex-121 reporter+balance reagent N6-acylated lysine","synonyms":[{"name":"(4-methylpiperazin-1-yl)acetyl","type":"exact"},{"name":"Accurate mass for 115, 118, 119 & 121","type":"related"},{"name":"Applied Biosystems iTRAQ(TM) multiplexed quantitation chemistry","type":"related"},{"name":"iTRAQ8plex:13C(6)15N(2)","type":"related"}],"termid":"MOD:01579"}


id: PBO:0073837
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"solute carrier family 7 member 13","termid":"PBO:0073837"}


id: GO:0002401
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Tolerance induction taking place in the mucosal-associated lymphoid tissue (MALT).","definition_xrefs":["ISBN:0781735149","GOC:jal"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mucosal tolerance induction","termid":"GO:0002427"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"tolerance induction in mucosal-associated lymphoid tissue","synonyms":[{"name":"tolerance induction in MALT","type":"exact"}],"termid":"GO:0002401"}


id: MOD:00923
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"modification from Unimod Chemical derivative","definition_xrefs":["Unimod:495"],"direct_ancestors":[{"relation_name":"is_a","term_name":"reagent derivatized residue","termid":"MOD:00848"},{"relation_name":"is_a","term_name":"modified L-cysteine residue","termid":"MOD:00905"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Cy5 CyDye DIGE Fluor saturation dye","synonyms":[{"name":"Cy5 CyDye DIGE Fluor saturation dye","type":"related"},{"name":"CyDye-Cy5","type":"related"}],"termid":"MOD:00923"}


id: GO:0061732
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The chemical reactions and pathways resulting in the formation of acetyl-CoA from pyruvate in the mitochondrion. The process begins with the transport of pyruvate from the cytosol to the mitochondrion where it is subsequently decarboxylated to form acetyl-CoA.","definition_xrefs":["ISBN:0201090910","GOC:dph"],"gene_count":0,"genotype_count":0,"name":"obsolete mitochondrial acetyl-CoA biosynthetic process from pyruvate (obsolete GO:0061732)","termid":"GO:0061732"}


id: PR:O14240
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- eaf6 gene.","definition_xrefs":["UniProtKB:O14240","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chromatin modification-related protein eaf6 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC6F6.09","synonyms":[{"name":"Spom972h-eaf6","type":"exact"}],"termid":"PR:O14240"}


id: PBO:0042205
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cyclin H pseudogene 1","termid":"PBO:0042205"}


id: PBO:0005777
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"U5 snRNP-associated protein Prp18 (predicted)","termid":"PBO:0005777"}


id: PBO:0030979
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_histone_H3-K9_dimethylation","termid":"PBO:0030979"}


id: PBO:0029959
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_ubiquinol-cytochrome-c_reductase_activity","termid":"PBO:0029959"}


id: GO:0102273
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: glutathionate + L-gamma-glutamyl-L-cysteinyl-beta-alaninate = gamma-Glu-Cys-gamma-Glu-Cys-beta-Ala + glycine.","definition_xrefs":["EC:2.3.2.-","GOC:pz"],"direct_ancestors":[{"relation_name":"is_a","term_name":"aminoacyltransferase activity","termid":"GO:0016755"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016746"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003824","GO:0016746","GO:0016740","GO:0003674"],"is_obsolete":false,"name":"homophytochelatin synthase (dimmer forming) activity","secondary_identifiers":["MetaCyc:RXN-12529"],"termid":"GO:0102273"}


id: GO:0002428
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which an antigen-presenting cell expresses peptide antigen in association with an MHC class Ib protein complex on its cell surface. The peptide antigen may originate from an endogenous or exogenous protein. Class Ib here refers to non-classical class I molecules, such as those of the HLA-E family.","definition_xrefs":["GOC:add","PMID:15928678"],"direct_ancestors":[{"relation_name":"is_a","term_name":"antigen processing and presentation via MHC class Ib","termid":"GO:0002475"},{"relation_name":"is_a","term_name":"antigen processing and presentation of peptide antigen","termid":"GO:0048002"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"antigen processing and presentation of peptide antigen via MHC class Ib","synonyms":[{"name":"peptide antigen processing and presentation via MHC class Ib","type":"exact"}],"termid":"GO:0002428"}


id: PATO:0001043
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A quality inhering in an entity by virtue of the bearer's propensity to resist an external stimulus.","definition_xrefs":["PATOC:GVG"],"direct_ancestors":[{"relation_name":"is_a","term_name":"sensitivity toward","termid":"PATO:0000085"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"susceptibility toward","synonyms":[{"name":"susceptibility","type":"exact"}],"termid":"PATO:0001043"}


id: GO:0050682
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to an AF-2 protein domain, a highly conserved ligand-dependent transactivation domain which is essential for receptor-mediated transcriptional activation.","definition_xrefs":["PMID:9682036"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein domain specific binding","termid":"GO:0019904"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005515"}],"interesting_parent_ids":["GO:0005515","GO:0005488","GO:0003674"],"is_obsolete":false,"name":"AF-2 domain binding","termid":"GO:0050682"}


id: PBO:0026734
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abolished_protein_localization_during_meiotic_cell_cycle","termid":"PBO:0026734"}


id: PBO:0085249
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Perilipin, involved in formation and stability of lipid droplets; expression pattern suggests a role in respiratory growth; computational analysis of large-scale protein-protein interaction data suggests a role in ATP/ADP exchange","termid":"PBO:0085249"}


id: GO:0030436
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The formation of spores derived from the products of an asexual cell division. Examples of this process are found in bacteria and fungi.","definition_xrefs":["PMID:9529886","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"asexual reproduction","termid":"GO:0019954"},{"relation_name":"is_a","term_name":"sporulation","termid":"GO:0043934"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"asexual sporulation","synonyms":[{"name":"asexual reproductive sporulation","type":"exact"},{"name":"asexual spore formation","type":"exact"},{"name":"mitotic spore formation","type":"exact"},{"name":"mitotic sporulation","type":"exact"}],"termid":"GO:0030436"}


id: SO:1000068
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A mutation causing a disruption of the translational reading frame, due to the insertion of two nucleotides.","definition_xrefs":["SO:ke"],"gene_count":0,"genotype_count":0,"name":"OBSOLETE SO:1000068 sequence_variant_causing_plus_2_frameshift (obsolete SO:1000068)","synonyms":[{"name":"plus 2 frameshift mutation","type":"exact"},{"name":"sequence variant causing plus 2 frameshift","type":"exact"}],"termid":"SO:1000068"}


id: PBO:0074347
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 pseudogene 6","termid":"PBO:0074347"}


id: CHEBI:17489
data:
  {"annotation_feature_type":"gene","cv_name":"chebi_ontology","definition":"3',5'-cyclic purine nucleotide having having adenine as the nucleobase.","direct_ancestors":[{"relation_name":"is_a","term_name":"chemical entity","termid":"CHEBI:24431"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"3',5'-cyclic AMP","secondary_identifiers":["CHEBI:19827","CHEBI:41588","CHEBI:11673","CHEBI:1325"],"termid":"CHEBI:17489"}


id: PBO:0063582
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pescadillo ribosomal biogenesis factor 1 pseudogene 2","termid":"PBO:0063582"}


id: GO:0034610
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the exonucleolytic cleavage of oligodeoxyribonucleotides to yield deoxyribonucleoside 5'-phosphates.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"DNA nuclease activity","termid":"GO:0004536"},{"relation_name":"is_a","term_name":"oligonucleotidase activity","termid":"GO:0008946"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0140097"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0016788"}],"interesting_parent_ids":["GO:0016787","GO:0016788","GO:0140097","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"oligodeoxyribonucleotidase activity","synonyms":[{"name":"DNA oligonucleotidase activity","type":"exact"}],"termid":"GO:0034610"}


id: PR:O94556
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A cell division cycle protein 23 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO00543","PRO:DNx","PANTHER:PTHR12558:SF10"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"anaphase-promoting complex subunit 8 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC6F12.14","secondary_identifiers":["UniProtKB:O94556"],"synonyms":[{"name":"20S cyclosome/APC complex protein apc8 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-CDC23","type":"exact"},{"name":"cell untimely torn protein 23 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:O94556"}


id: PBO:0087585
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Subunit of the Anaphase-Promoting Complex/Cyclosome (APC/C); which is a ubiquitin-protein ligase required for degradation of anaphase inhibitors, including mitotic cyclins, during the metaphase/anaphase transition; component of the catalytic core of the APC/C; has similarity to cullin Cdc53p","termid":"PBO:0087585"}


id: PBO:0072827
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SAM domain, SH3 domain and nuclear localization signals 1","termid":"PBO:0072827"}


id: GO:0035194
data:
  {"annotated_genes":["SJAG_00643"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[108232],"is_not":false,"rel_names":["regulates","positively_regulates"],"summary":null,"term":"GO:2000636"}]},"cv_name":"biological_process","definition":"A posttranscriptional gene silencing pathway in which regulatory RNAs elicit silencing of specific target genes, either by mRNA destabilization or inhibition of translation.","definition_xrefs":["PMID:11713190","PMID:11201747","PMID:15020054","PMID:33184244","PMID:18771919","PMID:32885814","PMID:15066275","GOC:ems"],"direct_ancestors":[{"relation_name":"is_a","term_name":"post-transcriptional gene silencing","termid":"GO:0016441"},{"relation_name":"is_a","term_name":"regulatory ncRNA-mediated gene silencing","termid":"GO:0031047"}],"gene_count":1,"genes_by_uniquename":{"SJAG_00643":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"negatively_regulates","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0010467","GO:0008150"],"is_obsolete":false,"name":"regulatory ncRNA-mediated post-transcriptional gene silencing","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["Wikipedia:RNA_interference","GO:0016246"],"synonyms":[{"name":"PTGS","type":"broad"},{"name":"RNA interference","type":"broad"},{"name":"RNA-dependent post-transcriptional gene silencing","type":"exact"},{"name":"RNA-mediated post-transcriptional gene silencing","type":"exact"},{"name":"RNA-mediated posttranscriptional gene silencing","type":"exact"},{"name":"RNAi","type":"broad"},{"name":"cosuppression","type":"related"},{"name":"ncRNA-mediated post-transcriptional gene silencing","type":"exact"},{"name":"post-transcriptional gene silencing by RNA","type":"related"},{"name":"posttranscriptional gene silencing by RNA","type":"exact"},{"name":"quelling","type":"related"}],"termid":"GO:0035194","terms_by_termid":{"GO:2000636":null}}


id: GO:0103089
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 2-(6'-methylthio)hexylmalate = 3-(6'-methylthio)hexylmalate.","definition_xrefs":["EC:5.4.4.-","GOC:pz"],"direct_ancestors":[{"relation_name":"is_a","term_name":"intramolecular hydroxytransferase activity","termid":"GO:0050486"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016853"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016853"],"is_obsolete":false,"name":"methylthiohexylmalate isomerase activity","secondary_identifiers":["MetaCyc:RXNQT-4173"],"termid":"GO:0103089"}


id: PBO:0045028
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DIS3 like exosome 3'-5' exoribonuclease","termid":"PBO:0045028"}


id: GO:0007351
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Subdivision of the embryo along the anterior/posterior axis into anterior, posterior and terminal regions.","definition_xrefs":["GOC:isa_complete","GOC:dph","ISBN:0879694238"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regionalization","termid":"GO:0003002"},{"relation_name":"part_of","term_name":"blastoderm segmentation","termid":"GO:0007350"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"tripartite regional subdivision","termid":"GO:0007351"}


id: SO:0001490
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"The status of a whole genome sequence, where the assembly is high quality, closure approaches have been successful for most gaps, misassemblies and low quality regions.","definition_xrefs":["DOI:10.1126"],"direct_ancestors":[{"relation_name":"is_a","term_name":"whole_genome_sequence_status","termid":"SO:0001499"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"noncontiguous_finished","synonyms":[{"name":"non contiguous finished","type":"exact"}],"termid":"SO:0001490"}


id: PR:000064868
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A DNA-directed RNA polymerase II subunit rpb1 CTD-phosphorylated form (Schizosaccharomyces pombe) that has been post-translationally modified to include phosphothreonine at the fourth position of one or more of the C-terminal heptad repeats (YSPTSPS).","definition_xrefs":["PRO:DAN","PomBase:VW","PMID:31276588"],"direct_ancestors":[{"relation_name":"is_a","term_name":"rpb1/Phos(CTD:S2|S5|S7)","termid":"PR:000050494"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Phos(CTD):T4","synonyms":[{"name":"Phos(CTD):T4","type":"exact"},{"name":"Spom-rpb1/Phos:7","type":"exact"},{"name":"T4P-Pol II (Schizosaccharomyces pombe)","type":"exact"}],"termid":"PR:000064868"}


id: PBO:0049279
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"G1 to S phase transition 2","termid":"PBO:0049279"}


id: FYPO:0007998
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed during mitotic interphase in which the localization of a protein to interphase microtubule bundles is abnormal.","definition_xrefs":["PMID:15184402","PomBase:mlr"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal protein localization to microtubule cytoskeleton during vegetative growth","termid":"FYPO:0000931"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0000002","FYPO:0000138","FYPO:0001985","FYPO:0001320"],"is_obsolete":false,"name":"abnormal protein localization to interphase microtubule bundle","termid":"FYPO:0007998"}


id: GO:0006155
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. (Was not defined before being made obsolete).","definition_xrefs":["GOC:ai"],"gene_count":0,"genotype_count":0,"name":"obsolete adenosine deaminase reaction (obsolete GO:0006155)","synonyms":[{"name":"adenosine deaminase reaction","type":"exact"}],"termid":"GO:0006155"}


id: PBO:0071997
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein S6 pseudogene 26","termid":"PBO:0071997"}


id: PBO:0069904
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 1195, pseudogene","termid":"PBO:0069904"}


id: GO:0002727
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate, or extent of natural killer cell cytokine production.","definition_xrefs":["GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of natural killer cell mediated immunity","termid":"GO:0002715"},{"relation_name":"is_a","term_name":"regulation of cytokine production involved in immune response","termid":"GO:0002718"},{"relation_name":"regulates","term_name":"natural killer cell cytokine production","termid":"GO:0002370"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0008150","GO:0010467"],"is_obsolete":false,"name":"regulation of natural killer cell cytokine production","synonyms":[{"name":"regulation of NK cell cytokine production","type":"exact"}],"termid":"GO:0002727"}


id: PBO:0085340
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Phosphoinositide binding protein; required for vesicle formation in the cytoplasm-to-vacuole targeting (CVT) pathway, autophagy, micronucleophagy and mitophagy; binds to several phosphoinositides including: PtdIns(3,5)P2, PI3P and PI4P; involved in PI3P-dependent recruitment and organization of both the Atg12-Atg5-Atg16 complex and Atg8p at the pre-autophagosomal structure; necessary for oxidant-induced cell death; WD-40 repeat containing PROPPIN family member","termid":"PBO:0085340"}


id: PBO:0080580
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"WDR5 divergent transcript","termid":"PBO:0080580"}


id: PBO:0001217
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"geranylgeranyltransferase I alpha subunit Cwp1","termid":"PBO:0001217"}


id: GO:1903340
data:
  {"annotated_genes":["SJAG_04551","SJAG_01181"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[98406,107474],"is_not":false,"summary":null,"term":"GO:1903340"}]},"cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of cell wall organization or biogenesis.","definition_xrefs":["GOC:TermGenie","GOC:vw","GO_REF:0000058"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of cellular process","termid":"GO:0048522"},{"relation_name":"is_a","term_name":"regulation of cell wall organization or biogenesis","termid":"GO:1903338"},{"relation_name":"positively_regulates","term_name":"cell wall organization or biogenesis","termid":"GO:0071554"}],"gene_count":2,"genes_by_uniquename":{"SJAG_01181":null,"SJAG_04551":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"positively_regulates","termid":"GO:0071554"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0071554"}],"interesting_parent_ids":["GO:0071554","GO:0008150"],"is_obsolete":false,"name":"positive regulation of cell wall organization or biogenesis","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"activation of cell wall organisation or biogenesis","type":"narrow"},{"name":"activation of cell wall organization or biogenesis","type":"narrow"},{"name":"activation of cell wall organization or biogenesis at cellular level","type":"narrow"},{"name":"activation of cellular cell wall organisation or biogenesis","type":"narrow"},{"name":"activation of cellular cell wall organization or biogenesis","type":"narrow"},{"name":"positive regulation of cell wall organisation or biogenesis","type":"exact"},{"name":"positive regulation of cell wall organization or biogenesis at cellular level","type":"exact"},{"name":"positive regulation of cellular cell wall organisation or biogenesis","type":"exact"},{"name":"positive regulation of cellular cell wall organization or biogenesis","type":"exact"},{"name":"up regulation of cell wall organisation or biogenesis","type":"exact"},{"name":"up regulation of cell wall organization or biogenesis","type":"exact"},{"name":"up regulation of cell wall organization or biogenesis at cellular level","type":"exact"},{"name":"up regulation of cellular cell wall organisation or biogenesis","type":"exact"},{"name":"up regulation of cellular cell wall organization or biogenesis","type":"exact"},{"name":"up-regulation of cell wall organisation or biogenesis","type":"exact"},{"name":"up-regulation of cell wall organization or biogenesis","type":"exact"},{"name":"up-regulation of cell wall organization or biogenesis at cellular level","type":"exact"},{"name":"up-regulation of cellular cell wall organisation or biogenesis","type":"exact"},{"name":"up-regulation of cellular cell wall organization or biogenesis","type":"exact"},{"name":"upregulation of cell wall organisation or biogenesis","type":"exact"},{"name":"upregulation of cell wall organization or biogenesis","type":"exact"},{"name":"upregulation of cell wall organization or biogenesis at cellular level","type":"exact"},{"name":"upregulation of cellular cell wall organisation or biogenesis","type":"exact"},{"name":"upregulation of cellular cell wall organization or biogenesis","type":"exact"}],"termid":"GO:1903340","terms_by_termid":{"GO:1903340":null}}


id: PBO:0058380
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 4752","termid":"PBO:0058380"}


id: PATO:0000910
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0000910 intercross sterile (obsolete PATO:0000910)","synonyms":[{"name":"intercross infertile","type":"related"}],"termid":"PATO:0000910"}


id: GO:0018580
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: ethylnitronate + O2 = acetaldehyde + nitrite.","definition_xrefs":["RHEA:28767","EC:1.13.12.16"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of one atom of oxygen (internal monooxygenases or internal mixed function oxidases)","termid":"GO:0016703"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016491","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"nitronate monooxygenase activity","secondary_identifiers":["MetaCyc:2-NITROPROPANE-DIOXYGENASE-RXN"],"synonyms":[{"name":"2-nitropropane dioxygenase activity","type":"related"},{"name":"nitronate:oxygen 2-oxidoreductase (nitrite-forming) activity","type":"exact"}],"termid":"GO:0018580"}


id: PBO:0046408
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"epithelial cell adhesion molecule","termid":"PBO:0046408"}


id: PBO:0072359
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein S26 pseudogene 45","termid":"PBO:0072359"}


id: PBO:0056420
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MARCKS like 1 pseudogene 1","termid":"PBO:0056420"}


id: PR:Q9Y7J5
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPBC1778.09 gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q9Y7J5"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TBC domain-containing protein C1778.09 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC1778.09","synonyms":[{"name":"Spom972h-SPBC1778.09","type":"exact"}],"termid":"PR:Q9Y7J5"}


id: GO:0042268
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of the rupture of cell membranes and the loss of cytoplasm.","definition_xrefs":["GOC:mtg_apoptosis","GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of cellular process","termid":"GO:0050794"},{"relation_name":"regulates","term_name":"cytolysis","termid":"GO:0019835"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of cytolysis","termid":"GO:0042268"}


id: PATO:0000026
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0000026 carbohydrate composition (obsolete PATO:0000026)","termid":"PATO:0000026"}


id: GO:0010050
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process involved in the transition of a plant from a juvenile phase of vegetative development to an adult phase of vegetative development.","definition_xrefs":["GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"post-embryonic development","termid":"GO:0009791"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"vegetative phase change","termid":"GO:0010050"}


id: PBO:0081028
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger CCCH-type containing 10","termid":"PBO:0081028"}


id: PBO:0063804
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PHKA2 antisense RNA 1","termid":"PBO:0063804"}


id: GO:0106155
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: protein L-lysine + 2-oxoglutarate + O2 = protein 3-hydroxy-L-lysine + succinate + CO2.","definition_xrefs":["GOC:al","PMID:29915238","RHEA:57152"],"direct_ancestors":[{"relation_name":"is_a","term_name":"2-oxoglutarate-dependent dioxygenase activity","termid":"GO:0016706"},{"relation_name":"is_a","term_name":"catalytic activity, acting on a protein","termid":"GO:0140096"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0140096"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016491","GO:0140096","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"peptidyl-lysine 3-dioxygenase activity","secondary_identifiers":["Reactome:R-HSA-9629578","EC:1.14.11.63","Reactome:R-HSA-9629591"],"termid":"GO:0106155"}


id: GO:0110100
data:
  {"annotated_genes":["SJAG_00794","SJAG_00773","SJAG_04745"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[91392],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0140456"},{"annotations":[91393,76671,74884],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0000073"}]},"cv_name":"biological_process","definition":"The release of duplicated spindle pole bodies (SPBs) and their migration away from each other within the nuclear membrane. Duplicated SPBs are connected by a bridge structure that is severed in order to release the SPBs from one another. Following liberation, SPBs diffuse through the nuclear membrane until they are across from each other. SPB separation must take place in order for a bipolar spindle to assemble.","definition_xrefs":["GOC:vw"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell cycle process","termid":"GO:0022402"},{"relation_name":"part_of","term_name":"spindle pole body organization","termid":"GO:0051300"}],"gene_count":3,"genes_by_uniquename":{"SJAG_00773":null,"SJAG_00794":null,"SJAG_04745":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0007049"},{"rel_name":"part_of","termid":"GO:0000226"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0007010"}],"interesting_parent_ids":["GO:0007010","GO:0008150","GO:0000226","GO:0007049"],"is_obsolete":false,"name":"spindle pole body separation","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"termid":"GO:0110100","terms_by_termid":{"GO:0000073":null,"GO:0140456":null}}


id: PBO:0042237
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cell cycle progression 1","termid":"PBO:0042237"}


id: PATO:0001978
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A shape quality inhering in a bearer by virtue of the bearer's being regularly divided by deep incisions.","definition_xrefs":["ISBN:0881923214"],"direct_ancestors":[{"relation_name":"is_a","term_name":"shape","termid":"PATO:0000052"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cut","synonyms":[{"name":"incised","type":"exact"}],"termid":"PATO:0001978"}


id: GO:0044461
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"OBSOLETE. Any constituent part of the bacterial-type flagellum, a 20 nm diameter filament composed of subunits of flagellin driven passively at its base by a motor powered by a transmembrane ion potential, typically a proton or sodium potential.","definition_xrefs":["PMID:25251856","PMID:12624192","GOC:cilia","GOC:mtg_sensu","DOI:10.1002/9780470015902.a0000744.pub4","GOC:jl","PMID:10572114"],"gene_count":0,"genotype_count":0,"name":"obsolete bacterial-type flagellum part (obsolete GO:0044461)","synonyms":[{"name":"flagellin-based flagellum part","type":"exact"}],"termid":"GO:0044461"}


id: PBO:0058448
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 5087","termid":"PBO:0058448"}


id: PBO:0038429
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"alpha 1,4-galactosyltransferase (P blood group)","termid":"PBO:0038429"}


id: PBO:0087671
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Subunit of the Isw1a complex; Isw1a has nucleosome-stimulated ATPase activity and represses transcription initiation by specific positioning of a promoter proximal dinucleosome; promotes nucleosome shifts in the 5 prime direction; IOC3 has a paralog, ESC8, that arose from the whole genome duplication","termid":"PBO:0087671"}


id: GO:1904360
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of spore germination.","definition_xrefs":["PMID:14718564","PMID:8798577","GO_REF:0000058","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of cellular process","termid":"GO:0048523"},{"relation_name":"is_a","term_name":"negative regulation of developmental process","termid":"GO:0051093"},{"relation_name":"is_a","term_name":"regulation of spore germination","termid":"GO:1904359"},{"relation_name":"negatively_regulates","term_name":"spore germination","termid":"GO:0009847"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of spore germination","secondary_identifiers":["GO:0075008"],"synonyms":[{"name":"down regulation of spore germination","type":"exact"},{"name":"down-regulation of spore germination","type":"exact"},{"name":"downregulation of spore germination","type":"exact"},{"name":"inhibition of spore germination","type":"narrow"},{"name":"negative regulation of spore germination on or near host","type":"narrow"}],"termid":"GO:1904360"}


id: PBO:0002792
data:
  {"annotation_feature_type":"gene","cv_name":"name_description","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nuclear elongation and deformation","termid":"PBO:0002792"}


id: PBO:0072345
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein S26 pseudogene 31","termid":"PBO:0072345"}


id: PBO:0109513
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"UCA1 antisense RNA 1","termid":"PBO:0109513"}


id: GO:0060285
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Cell motility due to the motion of one or more eukaryotic cilia. A eukaryotic cilium is a specialized organelle that consists of a filiform extrusion of the cell surface. Each cilium is bounded by an extrusion of the cytoplasmic (plasma) membrane, and contains a regular longitudinal array of microtubules, anchored basally in a centriole.","definition_xrefs":["GOC:dgh","GOC:mlg","GOC:dph","GOC:krc","GOC:mtg_cambridge_2013","GOC:cilia"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cilium or flagellum-dependent cell motility","termid":"GO:0001539"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cilium-dependent cell motility","secondary_identifiers":["GO:0071974"],"synonyms":[{"name":"ciliary cell motility","type":"related"},{"name":"cilium cell motility","type":"exact"},{"name":"microtubule-based flagellar cell motility","type":"exact"}],"termid":"GO:0060285"}


id: PBO:0063619
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 4","termid":"PBO:0063619"}


id: PBO:0073393
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SET domain containing 7, histone lysine methyltransferase","termid":"PBO:0073393"}


id: PBO:0091092
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ER membrane V-ATPase assembly factor Pkr1","termid":"PBO:0091092"}


id: GO:0002827
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate, or extent of a T-helper 1 type immune response.","definition_xrefs":["GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains","termid":"GO:0002824"},{"relation_name":"is_a","term_name":"regulation of T-helper 1 type immune response","termid":"GO:0002825"},{"relation_name":"positively_regulates","term_name":"T-helper 1 type immune response","termid":"GO:0042088"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of T-helper 1 type immune response","synonyms":[{"name":"activation of T-helper 1 type immune response","type":"narrow"},{"name":"stimulation of T-helper 1 type immune response","type":"narrow"},{"name":"up regulation of T-helper 1 type immune response","type":"exact"},{"name":"up-regulation of T-helper 1 type immune response","type":"exact"},{"name":"upregulation of T-helper 1 type immune response","type":"exact"}],"termid":"GO:0002827"}


id: PBO:0045892
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"eukaryotic translation elongation factor 1 gamma pseudogene 4","termid":"PBO:0045892"}


id: RO:HOM0000004
data:
  {"annotation_feature_type":"gene","cv_name":"relationship","definition":"Homoplasy that involves different underlying mechanisms or structures.","direct_ancestors":[{"relation_name":"is_a","term_name":"in_homoplasy_relationship_with","termid":"RO:HOM0000002"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"in_convergence_relationship_with","synonyms":[{"name":"analogy","type":"related"}],"termid":"RO:HOM0000004"}


id: GO:0009326
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"An enzyme complex that catalyzes the dehydrogenation of formate to produce carbon dioxide (CO2).","definition_xrefs":["PMID:8566699","PMID:1504073"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase complex","termid":"GO:1990204"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0032991","GO:0005575"],"is_obsolete":false,"name":"formate dehydrogenase complex","termid":"GO:0009326"}


id: PBO:0049285
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glutathione S-transferase alpha 4","termid":"PBO:0049285"}


id: PBO:0109092
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sperm microtubule inner protein 10","termid":"PBO:0109092"}


id: PBO:0060251
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MYCL pseudogene 1","termid":"PBO:0060251"}


id: RO:0008502
data:
  {"annotation_feature_type":"gene","cv_name":"relationship","definition":"inverse of epiphyte of","direct_ancestors":[{"relation_name":"is_a","term_name":"symbiotically_interacts_with","termid":"RO:0002440"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"has_epiphyte","termid":"RO:0008502"}


id: PBO:0109311
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"lncRNA oncogene in liver cancer 1","termid":"PBO:0109311"}


id: FYPO:0000760
data:
  {"alleles_by_uniquename":{"SJAG_00601:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_00601","name":"rip1delta","uniquename":"SJAG_00601:allele-1"},"SJAG_01355:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_01355","name":"cox6delta","uniquename":"SJAG_01355:allele-1"}},"annotation_feature_type":"genotype","cv_annotations":{"single_locus_phenotype":[{"annotations":[116219,116222],"is_not":false,"summary":null,"term":"FYPO:0000760"}]},"cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which conjugation is normal (i.e. indistinguishable from wild type).","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal phenotype","termid":"FYPO:0000257"},{"relation_name":"is_a","term_name":"mating phenotype","termid":"FYPO:0000301"}],"gene_count":2,"genes_by_uniquename":{"SJAG_00601":null,"SJAG_01355":null},"genotype_count":2,"genotypes_by_uniquename":{"cox6delta":{"display_name":"cox6delta","display_uniquename":"cox6delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01355:allele-1","expression":"Null"}]}]},"rip1delta":{"display_name":"rip1delta","display_uniquename":"rip1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_00601:allele-1","expression":"Null"}]}]}},"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000301"},{"rel_name":"is_a","termid":"FYPO:0000257"}],"interesting_parent_ids":["FYPO:0000257","FYPO:0000301"],"is_obsolete":false,"name":"normal mating","references_by_uniquename":{"PMID:37164017":null},"single_locus_annotated_genes":["SJAG_01355","SJAG_00601"],"single_locus_genotype_uniquenames":["rip1delta","cox6delta"],"synonyms":[{"name":"normal conjugation","type":"exact"},{"name":"normal conjugation with cellular fusion","type":"exact"},{"name":"normal zygote formation","type":"related"}],"termid":"FYPO:0000760","terms_by_termid":{"FYECO:0000015":null,"FYPO:0000760":null}}


id: PBO:0088235
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ornithine decarboxylase Spe1","termid":"PBO:0088235"}


id: PBO:0058819
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 7976","termid":"PBO:0058819"}


id: PBO:0060710
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NADH:ubiquinone oxidoreductase subunit A5 pseudogene 7","termid":"PBO:0060710"}


id: PBO:0091217
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase family or domain","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sub-telomeric 5Tm protein family","termid":"PBO:0091217"}


id: PBO:0070493
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L5 pseudogene 28","termid":"PBO:0070493"}


id: PBO:0075148
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nuclear ribonucleoprotein polypeptide C pseudogene 4","termid":"PBO:0075148"}


id: GO:0070814
data:
  {"annotated_genes":["SJAG_01693","SJAG_05027","SJAG_00084","SJAG_03475","SJAG_04060"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[83577,84609,85910,103915,114184],"is_not":false,"summary":null,"term":"GO:0070814"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of hydrogen sulfide, H2S.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"sulfur compound biosynthetic process","termid":"GO:0044272"},{"relation_name":"is_a","term_name":"hydrogen sulfide metabolic process","termid":"GO:0070813"}],"gene_count":5,"genes_by_uniquename":{"SJAG_00084":null,"SJAG_01693":null,"SJAG_03475":null,"SJAG_04060":null,"SJAG_05027":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006790"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006790","GO:0008150"],"is_obsolete":false,"name":"hydrogen sulfide biosynthetic process","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"hydrogen sulfide anabolism","type":"exact"},{"name":"hydrogen sulfide biosynthesis","type":"exact"},{"name":"hydrogen sulfide formation","type":"exact"},{"name":"hydrogen sulfide synthesis","type":"exact"},{"name":"hydrogen sulphide biosynthesis","type":"exact"},{"name":"hydrogen sulphide biosynthetic process","type":"exact"}],"termid":"GO:0070814","terms_by_termid":{"GO:0070814":null}}


id: GO:0051915
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which a chemical substance activates synaptic plasticity, the ability of synapses to change as circumstances require.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of synaptic plasticity by chemical substance","termid":"GO:0051914"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"induction of synaptic plasticity by chemical substance","synonyms":[{"name":"activation of synaptic plasticity by chemical substance","type":"exact"},{"name":"activation of synaptic plasticity by drug","type":"narrow"},{"name":"induction of synaptic plasticity by drug","type":"narrow"}],"termid":"GO:0051915"}


id: PBO:0000187
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"40S ribosomal protein S6","termid":"PBO:0000187"}


id: PBO:0049526
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"H2AZ1 divergent transcript","termid":"PBO:0049526"}


id: PATO:0001386
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"An aneuploidy quality inhering in a bearer by virtue of the bearer's containing only one chromosome from a pair in a cell's nucleus.","definition_xrefs":["Wikipedia:http://en.wikipedia.org/wiki/Monosomy"],"direct_ancestors":[{"relation_name":"is_a","term_name":"aneuploid","termid":"PATO:0001385"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"monosomy","termid":"PATO:0001386"}


id: PBO:0013088
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"galactosylxylosylprotein 3-beta-galactosyltransferase Pvg1","termid":"PBO:0013088"}


id: PR:O74426
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A serine/threonine-protein kinase 32A that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx","OMA:SCHPO04727"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"serine/threonine-protein kinase ppk33 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC162.10","secondary_identifiers":["UniProtKB:O74426"],"synonyms":[{"name":"Spom972h-STK32A","type":"exact"}],"termid":"PR:O74426"}


id: PBO:0050743
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"heat shock protein family E (Hsp10) member 1 pseudogene 5","termid":"PBO:0050743"}


id: GO:0019057
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process in which a symbiont alters or subverts translation of mRNA into protein in its host. The host is defined as the larger of the organisms involved in a symbiotic interaction.","definition_xrefs":["ISBN:0781718325"],"direct_ancestors":[{"relation_name":"is_a","term_name":"symbiont-mediated perturbation of host gene expression","termid":"GO:0039656"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"symbiont-mediated perturbation of host translation","synonyms":[{"name":"host cell protein synthesis shutoff","type":"broad"},{"name":"host translation shutoff","type":"exact"},{"name":"modification by virus of host cell mRNA translation","type":"narrow"},{"name":"modulation by virus of host translation","type":"narrow"},{"name":"modulation of host translation by virus","type":"narrow"},{"name":"regulation of host mRNA translation","type":"exact"},{"name":"regulation of host translation","type":"exact"},{"name":"viral host shutoff protein","type":"related"},{"name":"viral perturbation of host cell mRNA translation","type":"narrow"}],"termid":"GO:0019057"}


id: GO:1990374
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A inward rectifier potassium channel complex. Homo- or heterotetramer composed of subunits of the eukaryotic Kir2 protein family. Plays a key role in maintaining the correct resting potential in eukaryotic cells.","definition_xrefs":["GOC:bhm","PMID:16834334"],"direct_ancestors":[{"relation_name":"is_a","term_name":"inward rectifier potassium channel complex","termid":"GO:1902937"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0005886"}],"interesting_parent_ids":["GO:0005886","GO:0005575","GO:0032991"],"is_obsolete":false,"name":"Kir2 inward rectifier potassium channel complex","synonyms":[{"name":"Kir2.1 complex","type":"narrow"}],"termid":"GO:1990374"}


id: SO:0000110
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"Any extent of continuous biological sequence.","definition_xrefs":["SO:ke","LAMHDI:mb"],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sequence_feature","synonyms":[{"name":"INSDC_feature:misc_feature","type":"exact"},{"name":"INSDC_note:other","type":"exact"},{"name":"INSDC_note:sequence_feature","type":"exact"},{"name":"located sequence feature","type":"related"},{"name":"located_sequence_feature","type":"exact"},{"name":"sequence feature","type":"exact"}],"termid":"SO:0000110"}


id: PBO:0013463
data:
  {"annotation_feature_type":"gene","cv_name":"misc","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"trichostatin A suppresses accumulation of septated cells, but does not restore wild-type checkpoint function, in rad3delta or rad3-36 mutant","termid":"PBO:0013463"}


id: GO:0061575
data:
  {"annotated_genes":["SJAG_01213","SJAG_02057","SJAG_03247","SJAG_04614","SJAG_04140","SJAG_03699","SJAG_00439","SJAG_03618","SJAG_01401"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[70448,73627,78408,87402,97871,107708,108631,109557,113784],"is_not":false,"summary":null,"term":"GO:0061575"}]},"cv_name":"molecular_function","definition":"Binds to and increases the activity of a cyclin-dependent protein serine/threonine kinase.","definition_xrefs":["PMID:2569363","PMID:3322810","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cyclin-dependent protein serine/threonine kinase regulator activity","termid":"GO:0016538"},{"relation_name":"is_a","term_name":"protein serine/threonine kinase activator activity","termid":"GO:0043539"}],"gene_count":9,"genes_by_uniquename":{"SJAG_00439":null,"SJAG_01213":null,"SJAG_01401":null,"SJAG_02057":null,"SJAG_03247":null,"SJAG_03618":null,"SJAG_03699":null,"SJAG_04140":null,"SJAG_04614":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0140677"},{"rel_name":"is_a","termid":"GO:0098772"},{"rel_name":"is_a","termid":"GO:0030234"}],"interesting_parent_ids":["GO:0098772","GO:0003674","GO:0140677","GO:0030234"],"is_obsolete":false,"name":"cyclin-dependent protein serine/threonine kinase activator activity","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"secondary_identifiers":["GO:0016534","GO:0016535"],"synonyms":[{"name":"cyclin-dependent protein kinase 5 activator activity","type":"narrow"}],"termid":"GO:0061575","terms_by_termid":{"GO:0061575":null}}


id: GO:0034368
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The acquisition, loss or modification of a protein or lipid within a protein-lipid complex.","definition_xrefs":["GOC:BHF","GOC:mah","GOC:rl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein-containing complex remodeling","termid":"GO:0034367"},{"relation_name":"is_a","term_name":"protein-lipid complex organization","termid":"GO:0071825"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"protein-lipid complex remodeling","synonyms":[{"name":"protein-lipid complex remodelling","type":"exact"}],"termid":"GO:0034368"}


id: PBO:0027844
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abolished_mitotic_G2_DNA_damage_checkpoint","termid":"PBO:0027844"}


id: GO:0102820
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: norbixin + S-adenosyl-L-methionine = bixin + S-adenosyl-L-homocysteine.","definition_xrefs":["GOC:pz","EC:2.1.1.-"],"direct_ancestors":[{"relation_name":"is_a","term_name":"methyltransferase activity","termid":"GO:0008168"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016741"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016741","GO:0016740","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"norbixin methyltransferase activity","secondary_identifiers":["MetaCyc:RXN-8238"],"termid":"GO:0102820"}


id: GO:0046182
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of L-idonate, the anion of idonic acid, an aldonic acid derived from L-idose, an aldohexose which is epimeric with D-glucose.","definition_xrefs":["GOC:curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"carbohydrate biosynthetic process","termid":"GO:0016051"},{"relation_name":"is_a","term_name":"L-idonate metabolic process","termid":"GO:0019523"},{"relation_name":"is_a","term_name":"aldonic acid biosynthetic process","termid":"GO:0046175"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0005975"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0044281","GO:0005975","GO:0008150"],"is_obsolete":false,"name":"L-idonate biosynthetic process","synonyms":[{"name":"L-idonate anabolism","type":"exact"},{"name":"L-idonate biosynthesis","type":"exact"},{"name":"L-idonate formation","type":"exact"},{"name":"L-idonate synthesis","type":"exact"}],"termid":"GO:0046182"}


id: PBO:0047359
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"F-box and leucine rich repeat protein 13","termid":"PBO:0047359"}


id: PBO:0063010
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"platelet activating factor acetylhydrolase 2","termid":"PBO:0063010"}


id: PBO:0047731
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"formin binding protein 1 like","termid":"PBO:0047731"}


id: PBO:0027464
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_primary_cell_septum_biogenesis","termid":"PBO:0027464"}


id: PBO:0053492
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 470","termid":"PBO:0053492"}


id: RO:0008506
data:
  {"annotation_feature_type":"gene","cv_name":"relationship","definition":"An interaction relationship describing organisms that often occur together at the same time and space or in the same environment.","direct_ancestors":[{"relation_name":"is_a","term_name":"ecologically_related_to","termid":"RO:0002321"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"co-occurs","termid":"RO:0008506"}


id: GO:0061035
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the rate, frequency, or extent of cartilage development, the process whose specific outcome is the progression of the cartilage over time, from its formation to the mature structure. Cartilage is a connective tissue dominated by extracellular matrix containing collagen type II and large amounts of proteoglycan, particularly chondroitin sulfate.","definition_xrefs":["GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of multicellular organismal development","termid":"GO:2000026"},{"relation_name":"regulates","term_name":"cartilage development","termid":"GO:0051216"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of cartilage development","termid":"GO:0061035"}


id: GO:0097240
data:
  {"annotated_genes":["SJAG_03449","SJAG_02837","SJAG_04142","SJAG_02737","SJAG_02698","SJAG_01263","SJAG_01538","SJAG_01777","SJAG_01745","SJAG_05196"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[90671,84933,87253],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0140698"},{"annotations":[87254,99091,113654],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0072766"},{"annotations":[92843,78010,75218],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1990683"},{"annotations":[85640,102320],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0070197"},{"annotations":[87260],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0140464"}]},"cv_name":"biological_process","definition":"The process in which chromatin is anchored to the nuclear envelope.","definition_xrefs":["GOC:vw","PMID:31635174"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell cycle process","termid":"GO:0022402"},{"relation_name":"is_a","term_name":"chromosome localization","termid":"GO:0050000"}],"gene_count":10,"genes_by_uniquename":{"SJAG_01263":null,"SJAG_01538":null,"SJAG_01745":null,"SJAG_01777":null,"SJAG_02698":null,"SJAG_02737":null,"SJAG_02837":null,"SJAG_03449":null,"SJAG_04142":null,"SJAG_05196":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"part_of","termid":"GO:0007049"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0051179","GO:0007049","GO:0008150"],"is_obsolete":false,"name":"chromosome attachment to the nuclear envelope","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"synonyms":[{"name":"attachment of chromatin to nuclear envelope","type":"related"}],"termid":"GO:0097240","terms_by_termid":{"GO:0070197":null,"GO:0072766":null,"GO:0140464":null,"GO:0140698":null,"GO:1990683":null}}


id: PBO:0041358
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"C4BPA pseudogene 1","termid":"PBO:0041358"}


id: MOD:00765
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-cysteine residue to S-(L-cysteinyl)-L-cysteine, forming a disulfide bond with free cysteine.","definition_xrefs":["RESID:AA0025#CYS1","PubMed:8344916","PubMed:7918467","Unimod:312","PubMed:2076469","DeltaMass:260","PubMed:1988019","PubMed:3083866","PubMed:366603","PubMed:2001356"],"direct_ancestors":[{"relation_name":"is_a","term_name":"modified L-cysteine residue","termid":"MOD:00905"},{"relation_name":"is_a","term_name":"disulfide conjugated residue","termid":"MOD:01862"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cysteinylation (disulfide with free L-cysteine)","synonyms":[{"name":"(2R,2'R)-3,3'-disulfane-1,2-diylbis(2-aminopropanoic acid)","type":"exact"},{"name":"2-amino-3-(2-amino-2-carboxy-ethyl)disulfanyl-propanoic acid","type":"related"},{"name":"3,3'-disulfane-1,2-diylbis(2-azanylpropanoic acid)","type":"exact"},{"name":"3,3'-dithiobis(2-aminopropanoic acid)","type":"exact"},{"name":"3,3'-dithiobisalanine","type":"exact"},{"name":"3,3'-dithiodialanine","type":"exact"},{"name":"Cysteinylation","type":"exact"},{"name":"L-cystine","type":"exact"},{"name":"MOD_RES S-cysteinyl cysteine","type":"exact"},{"name":"S-cystenyl cystenyl","type":"exact"},{"name":"SCysCys","type":"exact"},{"name":"beta,beta'-diamino-beta,beta'-dicarboxydiethyldisulfide","type":"exact"},{"name":"beta,beta'-dithiodialanine","type":"exact"},{"name":"bis(alpha-aminopropionic acid)-beta-disulfide","type":"exact"},{"name":"bis(beta-amino-beta-carboxyethyl)disulfide","type":"exact"},{"name":"dicysteine","type":"exact"}],"termid":"MOD:00765"}


id: PBO:0017528
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"translation initiation factor eIF5, Tif5(predicted)","termid":"PBO:0017528"}


id: RO:0002459
data:
  {"annotation_feature_type":"gene","cv_name":"relationship","direct_ancestors":[{"relation_name":"is_a","term_name":"participates_in_a_biotic-biotic_interaction_with","termid":"RO:0002574"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"is_vector_for","termid":"RO:0002459"}


id: PBO:0057394
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 548f-2","termid":"PBO:0057394"}


id: FYPO:0006605
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell cycle checkpoint phenotype in which the S-phase DNA damage checkpoint (also known as the intra-S phase DNA damage checkpoint) is normal (i.e. indistinguishable from wild type) when the cell is exposed to methyl methanesulfonate. The S phase DNA damage checkpoint slows progression through S phase in response to DNA damage.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal S-phase DNA damage checkpoint","termid":"FYPO:0003530"},{"relation_name":"is_a","term_name":"normal mitotic DNA damage checkpoint during cellular response to methyl methanesulfonate","termid":"FYPO:0006437"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001312"},{"rel_name":"is_a","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0000298"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0001312","FYPO:0000002","FYPO:0000631","FYPO:0000298","FYPO:0000257","FYPO:0001320"],"is_obsolete":false,"name":"normal S-phase DNA damage checkpoint during cellular response to methyl methanesulfonate","synonyms":[{"name":"normal S-phase DNA damage checkpoint activation during cellular response to methyl methanesulfonate","type":"exact"},{"name":"normal S-phase DNA damage checkpoint during cellular response to MMS","type":"exact"},{"name":"normal S-phase DNA damage checkpoint during cellular response to methyl methanesulfonate during mitotic cell cycle","type":"exact"},{"name":"normal S-phase DNA damage checkpoint during cellular response to methyl methanesulfonate during vegetative growth","type":"exact"},{"name":"normal intra-S phase DNA damage checkpoint during cellular response to methyl methanesulfonate","type":"exact"},{"name":"normal mitotic S-phase DNA damage checkpoint during cellular response to methyl methanesulfonate","type":"exact"}],"termid":"FYPO:0006605"}


id: GO:0009447
data:
  {"annotated_genes":["SJAG_03288"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[83205],"is_not":false,"summary":null,"term":"GO:0009447"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of putrescine, 1,4-diaminobutane; putrescine is the metabolic precursor of spermidine and spermine.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"polyamine catabolic process","termid":"GO:0006598"},{"relation_name":"is_a","term_name":"putrescine metabolic process","termid":"GO:0009445"}],"gene_count":1,"genes_by_uniquename":{"SJAG_03288":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"putrescine catabolic process","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"putrescine catabolism","type":"exact"},{"name":"putrescine degradation","type":"exact"},{"name":"putrescine breakdown","type":"exact"}],"termid":"GO:0009447","terms_by_termid":{"GO:0009447":null}}


id: PBO:0056592
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MAM domain containing glycosylphosphatidylinositol anchor 1","termid":"PBO:0056592"}


id: PBO:0053872
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1148","termid":"PBO:0053872"}


id: GO:0043697
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which a specialized cell loses the structural or functional features that characterize it in the mature organism, or some other relatively stable phase of the organism's life history. Under certain conditions, these cells can revert back to the features of the stem cells that were their ancestors.","definition_xrefs":["GOC:dph","GOC:pg"],"direct_ancestors":[{"relation_name":"is_a","term_name":"dedifferentiation","termid":"GO:0043696"},{"relation_name":"is_a","term_name":"cellular developmental process","termid":"GO:0048869"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cell dedifferentiation","termid":"GO:0043697"}


id: GO:0050168
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: H2O + pentanamide = NH4 + valerate.","definition_xrefs":["RHEA:10000","EC:3.5.1.50"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides","termid":"GO:0016811"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016810"},{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016787","GO:0003674","GO:0003824","GO:0016810"],"is_obsolete":false,"name":"pentanamidase activity","secondary_identifiers":["KEGG_REACTION:R02938","MetaCyc:PENTANAMIDASE-RXN"],"synonyms":[{"name":"pentanamide amidohydrolase activity","type":"related"},{"name":"valeramidase activity","type":"related"}],"termid":"GO:0050168"}


id: SO:0000711
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A gene with mRNA recoded by translational bypass.","definition_xrefs":["SO:xp"],"direct_ancestors":[{"relation_name":"has_quality","term_name":"recoded_by_translational_bypass","termid":"SO:0000886"},{"relation_name":"is_a","term_name":"gene_with_recoded_mRNA","termid":"SO:0000693"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"gene_with_mRNA_recoded_by_translational_bypass","synonyms":[{"name":"gene with mRNA recoded by translational bypass","type":"exact"}],"termid":"SO:0000711"}


id: GO:0060496
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that mediates the transfer of information from a mesenchymal cell to an epithelial cell and contributes to the development of the lung.","definition_xrefs":["GOC:mtg_lung","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell-cell signaling involved in lung development","termid":"GO:0060495"},{"relation_name":"is_a","term_name":"mesenchymal-epithelial cell signaling","termid":"GO:0060638"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"mesenchymal-epithelial cell signaling involved in lung development","synonyms":[{"name":"mesenchymal-epithelial cell signalling involved in lung development","type":"exact"}],"termid":"GO:0060496"}


id: GO:1903228
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of xanthosine.","definition_xrefs":["GOC:TermGenie","PMID:7007809","PMID:7559336","GO_REF:0000068"],"direct_ancestors":[{"relation_name":"is_a","term_name":"purine ribonucleoside catabolic process","termid":"GO:0046130"},{"relation_name":"is_a","term_name":"xanthosine metabolic process","termid":"GO:1903227"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0055086"},{"rel_name":"is_a","termid":"GO:0044248"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0055086","GO:0008150","GO:0044281","GO:0044248"],"is_obsolete":false,"name":"xanthosine catabolic process","synonyms":[{"name":"xanthosine breakdown","type":"exact"},{"name":"xanthosine catabolism","type":"exact"},{"name":"xanthosine degradation","type":"exact"}],"termid":"GO:1903228"}


id: SO:0001591
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A sequence variant that reverts the sequence of a previous frameshift mutation back to the initial frame.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"frameshift_variant","termid":"SO:0001589"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"frame_restoring_variant","synonyms":[{"name":"frame restoring variant","type":"exact"}],"termid":"SO:0001591"}


id: GO:0034356
data:
  {"annotated_genes":["SJAG_00957","SJAG_01500","SJAG_04693","SJAG_01359"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[70921,86551,86979,109689],"is_not":false,"summary":null,"term":"GO:0034356"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of nicotinamide adenine dinucleotide (NAD) from the vitamin precursor nicotinamide riboside.","definition_xrefs":["PMID:17482543"],"direct_ancestors":[{"relation_name":"is_a","term_name":"NAD biosynthetic process","termid":"GO:0009435"}],"gene_count":4,"genes_by_uniquename":{"SJAG_00957":null,"SJAG_01359":null,"SJAG_01500":null,"SJAG_04693":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0055086"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0044281","GO:0055086"],"is_obsolete":false,"name":"NAD biosynthesis via nicotinamide riboside salvage pathway","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"synonyms":[{"name":"NR salvage pathway","type":"exact"},{"name":"nicotinamide riboside salvage pathway","type":"exact"}],"termid":"GO:0034356","terms_by_termid":{"GO:0034356":null}}


id: GO:0001651
data:
  {"annotated_genes":["SJAG_00259"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[84667],"is_not":false,"summary":null,"term":"GO:0001651"}]},"cv_name":"cellular_component","definition":"A structure found in the nucleolus, which contains newly synthesized preribosomal RNA (pre-rRNA) and a collection of proteins.","definition_xrefs":["PMID:10754561"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular anatomical entity","termid":"GO:0110165"},{"relation_name":"part_of","term_name":"nucleolus","termid":"GO:0005730"}],"gene_count":1,"genes_by_uniquename":{"SJAG_00259":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005730"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005634"}],"interesting_parent_ids":["GO:0005634","GO:0005730","GO:0005575"],"is_obsolete":false,"name":"dense fibrillar component","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["NIF_Subcellular:sao1841764412"],"synonyms":[{"name":"pars fibrosa","type":"broad"}],"termid":"GO:0001651","terms_by_termid":{"GO:0001651":null}}


id: GO:0106013
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of protein localization to the cell cortex of the cell tip.","definition_xrefs":["GOC:vw","PMID:19474792"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of protein localization to cell cortex of cell tip","termid":"GO:1990895"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of protein localization to cell cortex of cell tip","termid":"GO:0106013"}


id: PR:O14275
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- ppr4 gene.","definition_xrefs":["PRO:DNx","UniProtKB:O14275"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pentatricopeptide repeat-containing protein 4, mitochondrial (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC8C9.06c","synonyms":[{"name":"Spom972h-ppr4","type":"exact"}],"termid":"PR:O14275"}


id: GO:0035416
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that activates or increases the frequency, rate or extent of mitotic prometaphase, the stage following prophase in mitosis (in higher eukaryotes) during which the nuclear envelope is disrupted and breaks into membrane vesicles, and the spindle microtubules enter the nuclear region.","definition_xrefs":["GOC:bf"],"gene_count":0,"genotype_count":0,"name":"obsolete positive regulation of mitotic prometaphase (obsolete GO:0035416)","synonyms":[{"name":"positive regulation of mitotic prometaphase","type":"exact"}],"termid":"GO:0035416"}


id: PBO:0041081
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"BRK1 pseudogene 2","termid":"PBO:0041081"}


id: GO:2000568
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of memory T cell activation.","definition_xrefs":["GOC:obol"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of T cell activation","termid":"GO:0050870"},{"relation_name":"is_a","term_name":"regulation of memory T cell activation","termid":"GO:2000567"},{"relation_name":"positively_regulates","term_name":"memory T cell activation","termid":"GO:0035709"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0007155"},{"rel_name":"positively_regulates","termid":"GO:0007155"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0007155"],"is_obsolete":false,"name":"positive regulation of memory T cell activation","termid":"GO:2000568"}


id: PBO:0004242
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"calcium-dependent serine/threonine protein phosphatase calcineurin, catalytic subunit Ppb1","termid":"PBO:0004242"}


id: PBO:0082059
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"3-hydroxy-3-methylglutaryl-CoA (HMG-CoA) synthase; catalyzes the formation of HMG-CoA from acetyl-CoA and acetoacetyl-CoA; involved in the second step in mevalonate biosynthesis","termid":"PBO:0082059"}


id: PBO:0000209
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"intergenic RNA (predicted), possible alternative UTR","termid":"PBO:0000209"}


id: PBO:0027940
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_viability_upon_glucose_starvation","termid":"PBO:0027940"}


id: GO:0080144
data:
  {"annotated_genes":["SJAG_01471"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[92734],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0090465"},{"annotations":[92735],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0090464"},{"annotations":[92736],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0090463"}]},"cv_name":"biological_process","definition":"A homeostatic process involved in the maintenance of a steady state level of amino acids within a cell.","definition_xrefs":["PMID:19955263"],"direct_ancestors":[{"relation_name":"is_a","term_name":"intracellular chemical homeostasis","termid":"GO:0055082"}],"gene_count":1,"genes_by_uniquename":{"SJAG_01471":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"intracellular amino acid homeostasis","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"amino acid homeostasis","type":"broad"},{"name":"cellular amino acid homeostasis","type":"exact"}],"termid":"GO:0080144","terms_by_termid":{"GO:0090463":null,"GO:0090464":null,"GO:0090465":null}}


id: GO:0045516
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to an interleukin-19 receptor.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cytokine receptor binding","termid":"GO:0005126"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0005515"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0005515","GO:0005488"],"is_obsolete":false,"name":"interleukin-19 receptor binding","synonyms":[{"name":"IL-19","type":"narrow"},{"name":"interleukin-19 receptor ligand","type":"narrow"}],"termid":"GO:0045516"}


id: PBO:0017414
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-preceded_by","termid":"PBO:0017414"}


id: GO:0140449
data:
  {"annotated_genes":["SJAG_01745"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[87261],"is_not":false,"summary":null,"term":"GO:0140449"}]},"cv_name":"molecular_function","definition":"The binding activity of a molecule that brings together the centromeric region of a chromosome and the inner nuclear membrane by interacting with both the centromere/kinetochore complex and the nuclear membrane, in order to establish and maintain the centromere/kinetochore location.","definition_xrefs":["PMID:31635174"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein-membrane adaptor activity","termid":"GO:0043495"}],"gene_count":1,"genes_by_uniquename":{"SJAG_01745":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0030674"},{"rel_name":"is_a","termid":"GO:0060090"}],"interesting_parent_ids":["GO:0060090","GO:0003674","GO:0030674"],"is_obsolete":false,"name":"centromere-nuclear envelope anchor activity","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"centromere nuclear envelope anchor activity","type":"exact"},{"name":"centromere nuclear envelope tether activity","type":"exact"},{"name":"centromere-inner nuclear envelope anchor activity","type":"exact"},{"name":"centromere-inner nuclear envelope tether activity","type":"exact"},{"name":"chromosome, centromeric region-nuclear envelope anchor activity","type":"exact"},{"name":"nuclear envelope-centromere anchor activity","type":"exact"},{"name":"nuclear envelope-centromere tether activity","type":"exact"}],"termid":"GO:0140449","terms_by_termid":{"GO:0140449":null}}


id: PBO:0002594
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"S-adenosylmethionine transporter (predicted)","termid":"PBO:0002594"}


id: PBO:0047468
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Fc receptor like A","termid":"PBO:0047468"}


id: FYPO:0003613
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which cohesion between sister chromatids is normal (i.e. indistinguishable from wild type) during prophase of the first meiotic nuclear division.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal meiotic sister chromatid cohesion","termid":"FYPO:0002094"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000257"}],"interesting_parent_ids":["FYPO:0000257","FYPO:0000002"],"is_obsolete":false,"name":"normal meiotic sister chromatid cohesion during meiotic prophase I","synonyms":[{"name":"normal sister chromatid cohesion during meiotic prophase I","type":"exact"}],"termid":"FYPO:0003613"}


id: GO:0052609
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 4-ketotorulene + a reduced electron acceptor + oxygen = 3-hydroxy-4-ketotorulene + an oxidized electron acceptor + H2O.","definition_xrefs":["MetaCyc:RXN-8218"],"direct_ancestors":[{"relation_name":"is_a","term_name":"monooxygenase activity","termid":"GO:0004497"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016491"],"is_obsolete":false,"name":"4-ketotorulene 3-hydroxylase activity","synonyms":[{"name":"beta-carotene hydroxylase activity","type":"broad"},{"name":"beta-ring carotenoid 3-hydroxylase activity","type":"broad"},{"name":"carotene beta-ring hydroxylase activity","type":"broad"}],"termid":"GO:0052609"}


id: GO:0061479
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a reverse transcriptase inhibitor stimulus.","definition_xrefs":["GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to antibiotic","termid":"GO:0046677"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"response to reverse transcriptase inhibitor","termid":"GO:0061479"}


id: PBO:0042768
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"centrosomal protein 70","termid":"PBO:0042768"}


id: PBO:0089421
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ARP2/3 actin-organizing complex WD repeat subunit Sop2","termid":"PBO:0089421"}


id: PBO:0082032
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"17-kDa component of the U4/U6aU5 tri-snRNP; plays an essential role in pre-mRNA splicing; human ortholog TXNL4A (the human U5-specific 15-kDa protein) complements yeast dib1 null mutant","termid":"PBO:0082032"}


id: GO:0010948
data:
  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id: FYPO:0006707
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A transport phenotype observed in the vegetative growth phase of the life cycle in which the movement of calcium ions from the cytosol to the endoplasmic reticulum is decreased.","definition_xrefs":["GO:1903515","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased intracellular transport","termid":"FYPO:0000464"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0001320","FYPO:0001985","FYPO:0000002","FYPO:0000138"],"is_obsolete":false,"name":"decreased calcium ion transport from cytosol to endoplasmic reticulum","synonyms":[{"name":"decreased calcium ion transport from cytosol to ER during vegetative growth","type":"exact"},{"name":"decreased calcium ion transport from cytosol to endoplasmic reticulum during mitotic cell cycle","type":"related"},{"name":"decreased calcium ion transport from cytosol to endoplasmic reticulum during vegetative growth","type":"exact"},{"name":"decreased calcium transport from cytosol to endoplasmic reticulum","type":"exact"},{"name":"reduced calcium ion transport from cytosol to endoplasmic reticulum during vegetative growth","type":"exact"}],"termid":"FYPO:0006707"}


id: PBO:0029590
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  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-RNA_binding_phenotype","termid":"PBO:0029590"}


id: GO:0003383
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  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The actin-mediated process that results in the contraction of the apical end of a polarized columnar epithelial cell.","definition_xrefs":["GOC:dph","GOC:tb","GOC:ascb_2009"],"direct_ancestors":[{"relation_name":"is_a","term_name":"actin-mediated cell contraction","termid":"GO:0070252"},{"relation_name":"part_of","term_name":"epithelial cell morphogenesis","termid":"GO:0003382"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"apical constriction","termid":"GO:0003383"}


id: PBO:0090274
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  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cystathionine beta-lyase Cbl1","termid":"PBO:0090274"}


id: GO:0008181
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  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. (Was not defined before being made obsolete).","definition_xrefs":["GOC:go_curators"],"gene_count":0,"genotype_count":0,"name":"obsolete tumor suppressor (obsolete GO:0008181)","synonyms":[{"name":"tumor suppressor","type":"exact"}],"termid":"GO:0008181"}


id: PBO:0013480
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  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA 2'-O-methylase subunit Trm72 (predicted)","termid":"PBO:0013480"}


id: PBO:0079277
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  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TELO2 interacting protein 1","termid":"PBO:0079277"}


id: PBO:0076720
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  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"trichohyalin","termid":"PBO:0076720"}


id: GO:0030599
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  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: pectin + n H2O = n methanol + pectate.","definition_xrefs":["EC:3.1.1.11"],"direct_ancestors":[{"relation_name":"is_a","term_name":"carboxylic ester hydrolase activity","termid":"GO:0052689"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016788"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016787","GO:0003824","GO:0003674","GO:0016788"],"is_obsolete":false,"name":"pectinesterase activity","secondary_identifiers":["RHEA:22380","MetaCyc:RXN-19782"],"synonyms":[{"name":"pectase activity","type":"related"},{"name":"pectin demethoxylase activity","type":"related"},{"name":"pectin methoxylase activity","type":"related"},{"name":"pectin methyl esterase activity","type":"related"},{"name":"pectin methylesterase activity","type":"exact"},{"name":"pectin pectylhydrolase activity","type":"related"},{"name":"pectinoesterase activity","type":"related"}],"termid":"GO:0030599"}


id: PBO:0055257
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  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2684","termid":"PBO:0055257"}


id: PBO:0068263
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 45S pre-ribosomal N5","termid":"PBO:0068263"}


id: SO:0000224
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A primary transcript encoding phenylalanyl tRNA (SO:0000267).","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"tRNA_primary_transcript","termid":"SO:0000210"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"phenylalanine_tRNA_primary_transcript","synonyms":[{"name":"phenylalanine tRNA primary transcript","type":"exact"}],"termid":"SO:0000224"}


id: PBO:0065568
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"prostaglandin I2 receptor","termid":"PBO:0065568"}


id: GO:0072210
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of a nephron in the metanephros over time, from its formation to the mature structure. A nephron is the functional unit of the kidney.","definition_xrefs":["GOC:mtg_kidney_jan10"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nephron development","termid":"GO:0072006"},{"relation_name":"part_of","term_name":"metanephros development","termid":"GO:0001656"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"metanephric nephron development","termid":"GO:0072210"}


id: GO:0019546
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of arginine into other compounds, including ornithine and CO2, using the enzyme arginine deiminase.","definition_xrefs":["GOC:mah","MetaCyc:ARGDEGRAD-PWY"],"direct_ancestors":[{"relation_name":"is_a","term_name":"arginine catabolic process","termid":"GO:0006527"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006520"},{"rel_name":"is_a","termid":"GO:0044248"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006520","GO:0044281","GO:0008150","GO:0044248"],"is_obsolete":false,"name":"arginine deiminase pathway","termid":"GO:0019546"}


id: GO:0150072
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of arginase activity.","definition_xrefs":["GOC:aruk","GOC:bc","PMID:26670206"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of hydrolase activity","termid":"GO:0051345"},{"relation_name":"is_a","term_name":"regulation of arginase activity","termid":"GO:0150070"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of arginase activity","termid":"GO:0150072"}


id: PATO:0000497
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  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0000497 relative rhythym value (obsolete PATO:0000497)","termid":"PATO:0000497"}


id: GO:0140733
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  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binds to and increases the activity of a tRNA ligase.","definition_xrefs":["PMID:30943413"],"direct_ancestors":[{"relation_name":"is_a","term_name":"enzyme activator activity","termid":"GO:0008047"},{"relation_name":"is_a","term_name":"ligase regulator activity","termid":"GO:0055103"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0140677"},{"rel_name":"is_a","termid":"GO:0030234"},{"rel_name":"is_a","termid":"GO:0098772"}],"interesting_parent_ids":["GO:0003674","GO:0098772","GO:0140677","GO:0030234"],"is_obsolete":false,"name":"tRNA ligase activator activity","termid":"GO:0140733"}


id: GO:2000787
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of venous endothelial cell fate commitment.","definition_xrefs":["PMID:11585794"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of cell fate commitment","termid":"GO:0010453"},{"relation_name":"is_a","term_name":"regulation of blood vessel endothelial cell differentiation","termid":"GO:0110057"},{"relation_name":"regulates","term_name":"venous endothelial cell fate commitment","termid":"GO:0060845"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of venous endothelial cell fate commitment","termid":"GO:2000787"}


id: PBO:0036338
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"metal-dependent protein hydrolase family protein, human C12orf10 ortholog","termid":"PBO:0036338"}


id: PBO:0000850
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protein kinase, RIO family (predicted)","termid":"PBO:0000850"}


id: PBO:0085529
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein component of the small (40S) ribosomal subunit; homologous to mammalian ribosomal protein S28, no bacterial homolog; has an extraribosomal function in autoregulation, in which Rps28Bp binds to a decapping complex via Edc3p, which then binds to RPS28B mRNA leading to its decapping and degradation; RPS28B has a paralog, RPS28A, that arose from the whole genome duplication","termid":"PBO:0085529"}


id: PBO:0085347
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Phospholipase B (lysophospholipase) involved in lipid metabolism; required for efficient acyl chain remodeling of newly synthesized phosphatidylethanolamine-derived phosphatidylcholine; required for deacylation of phosphatidylcholine and phosphatidylethanolamine but not phosphatidylinositol; PLB1 has a paralog, PLB3, that arose from the whole genome duplication","termid":"PBO:0085347"}


id: PR:Q9USS8
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPBC4.02c gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q9USS8"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized protein C4.02c (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC4.02c","synonyms":[{"name":"Spom972h-SPBC4.02c","type":"exact"}],"termid":"PR:Q9USS8"}


id: GO:0032987
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The disaggregation of a protein-lipid complex into its constituent components.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein-containing complex disassembly","termid":"GO:0032984"},{"relation_name":"is_a","term_name":"protein-lipid complex organization","termid":"GO:0071825"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"protein-lipid complex disassembly","termid":"GO:0032987"}


id: PBO:0091510
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nucleotide exchange factor for the ER lumenal Hsp70 chaperone, Sil1","termid":"PBO:0091510"}


id: FYPO:0003962
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which the observed rate of phospholipid:diacylglycerol acyltransferase activity is decreased.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased catalytic activity","termid":"FYPO:0000663"},{"relation_name":"is_a","term_name":"abnormal phospholipid:diacylglycerol acyltransferase activity","termid":"FYPO:0003961"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000654"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000707"},{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0000661"}],"interesting_parent_ids":["FYPO:0000661","FYPO:0001985","FYPO:0000707","FYPO:0000652","FYPO:0000654"],"is_obsolete":false,"name":"decreased phospholipid:diacylglycerol acyltransferase activity","synonyms":[{"name":"decreased PDAT activity","type":"exact"},{"name":"reduced phospholipid:diacylglycerol acyltransferase activity","type":"exact"}],"termid":"FYPO:0003962"}


id: MOD:00787
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"modification from Unimod - label for the active site serine of the serine esterase/protease family also shown to label tyrosine in serum albumin","definition_xrefs":["Unimod:362"],"direct_ancestors":[{"relation_name":"is_a","term_name":"reagent derivatized residue","termid":"MOD:00848"},{"relation_name":"is_a","term_name":"phosphorus containing modified residue","termid":"MOD:00861"},{"relation_name":"is_a","term_name":"modified L-serine residue","termid":"MOD:00916"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"diisopropylphosphoserine","synonyms":[{"name":"Diisopropylphosphate","type":"related"},{"name":"O-Diisopropylphosphorylation","type":"related"}],"termid":"MOD:00787"}


id: GO:0052472
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process in which an organism modulates the frequency, rate or extent of its symbiont's transcription.","definition_xrefs":["GOC:mtg_pamgo_17jul06"],"direct_ancestors":[{"relation_name":"is_a","term_name":"modulation by host of symbiont process","termid":"GO:0051851"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"modulation by host of symbiont transcription","termid":"GO:0052472"}


id: GO:1904762
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of myofibroblast differentiation.","definition_xrefs":["GOC:TermGenie","PMID:20533548","GO_REF:0000058","GOC:BHF","GOC:rph","GOC:BHF_miRNA"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of cell differentiation","termid":"GO:0045597"},{"relation_name":"is_a","term_name":"regulation of myofibroblast differentiation","termid":"GO:1904760"},{"relation_name":"positively_regulates","term_name":"myofibroblast differentiation","termid":"GO:0036446"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of myofibroblast differentiation","synonyms":[{"name":"activation of myofibroblast cell differentiation","type":"narrow"},{"name":"activation of myofibroblast differentiation","type":"narrow"},{"name":"positive regulation of myofibroblast cell differentiation","type":"exact"},{"name":"up regulation of myofibroblast cell differentiation","type":"exact"},{"name":"up regulation of myofibroblast differentiation","type":"exact"},{"name":"up-regulation of myofibroblast cell differentiation","type":"exact"},{"name":"up-regulation of myofibroblast differentiation","type":"exact"},{"name":"upregulation of myofibroblast cell differentiation","type":"exact"},{"name":"upregulation of myofibroblast differentiation","type":"exact"}],"termid":"GO:1904762"}


id: GO:0035330
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of hippo signaling.","definition_xrefs":["GOC:bf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of intracellular signal transduction","termid":"GO:1902531"},{"relation_name":"regulates","term_name":"hippo signaling","termid":"GO:0035329"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"regulation of hippo signaling","synonyms":[{"name":"regulation of hippo signaling cascade","type":"related"},{"name":"regulation of hippo signaling pathway","type":"exact"},{"name":"regulation of hippo signalling cascade","type":"related"}],"termid":"GO:0035330"}


id: GO:0016442
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A ribonucleoprotein complex that contains members of the Argonaute family of proteins, small interfering RNAs (siRNAs) or microRNAs (miRNAs), and miRNA or siRNA-complementary mRNAs, in addition to a number of accessory factors. The RISC complex is involved in posttranscriptional repression of gene expression through downregulation of translation or induction of mRNA degradation.","definition_xrefs":["PMID:15145345","PMID:10749213"],"direct_ancestors":[{"relation_name":"is_a","term_name":"RNAi effector complex","termid":"GO:0031332"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0032991","GO:0005575"],"is_obsolete":false,"name":"RISC complex","secondary_identifiers":["Wikipedia:RNA-induced_silencing_complex","GO:0035068"],"synonyms":[{"name":"RNA-induced silencing complex","type":"exact"},{"name":"miRNP complex","type":"related"},{"name":"micro-ribonucleoprotein complex","type":"related"}],"termid":"GO:0016442"}


id: PBO:0031237
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_cellular_response_to_hydrogen_peroxide","termid":"PBO:0031237"}


id: GO:0019467
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of ornithine by decarboxylation.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ornithine catabolic process","termid":"GO:0006593"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044248"},{"rel_name":"is_a","termid":"GO:0006520"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0008150","GO:0044281","GO:0006520","GO:0044248"],"is_obsolete":false,"name":"ornithine catabolic process, by decarboxylation","secondary_identifiers":["MetaCyc:ORNDEG-PWY"],"synonyms":[{"name":"ornithine breakdown, by decarboxylation","type":"exact"},{"name":"ornithine degradation, by decarboxylation","type":"exact"}],"termid":"GO:0019467"}


id: FYPO:0007338
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which trimethylation of lysine at position 4 of histone H3 in centromeric regions occurs to a greater extent than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased histone H3-K4 methylation at centromere during vegetative growth","termid":"FYPO:0007337"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0002494"},{"rel_name":"is_a","termid":"FYPO:0002274"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0002494","FYPO:0005447","FYPO:0001320","FYPO:0002274","FYPO:0000002"],"is_obsolete":false,"name":"increased histone H3-K4 trimethylation at centromere during vegetative growth","synonyms":[{"name":"increased centromeric histone H3-K4 trimethylation during vegetative growth","type":"exact"},{"name":"increased histone H3 K4 trimethylation at centromere","type":"exact"},{"name":"increased histone H3-K4 trimethylation at centromere during mitotic cell cycle during vegetative growth","type":"related"},{"name":"increased histone H3-K4 trimethylation at centromeric region","type":"exact"},{"name":"increased histone H3K4 trimethylation at centromere","type":"exact"},{"name":"increased histone H3K4me3 at centromere","type":"exact"},{"name":"increased histone lysine H3 K4 trimethylation at centromere","type":"exact"}],"termid":"FYPO:0007338"}


id: GO:0050450
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: acetyl-CoA + H2O + oxaloacetate = citrate + CoA, where the acetyl group is added to the re-face of oxaloacetate; acetyl-CoA provides the two carbon atoms of the pro-R carboxymethyl group.","definition_xrefs":["PMID:17400742"],"direct_ancestors":[{"relation_name":"is_a","term_name":"citrate synthase activity","termid":"GO:0036440"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016746"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016746","GO:0003824","GO:0016740","GO:0003674"],"is_obsolete":false,"name":"citrate (Re)-synthase activity","secondary_identifiers":["EC:2.3.3.3","MetaCyc:CITSYN-RXN"],"synonyms":[{"name":"(R)-citrate synthase activity","type":"related"},{"name":"Re-citrate-synthase activity","type":"related"},{"name":"acetyl-CoA:oxaloacetate C-acetyltransferase [thioester-hydrolysing, (pro-R)-carboxymethyl-forming]","type":"related"},{"name":"citrate oxaloacetate-lyase ((pro-3R)-CH(2)COO(-)->acetyl-CoA) activity","type":"related"},{"name":"citrate oxaloacetate-lyase [(pro-3R)-CH2COO-rightacetyl-CoA]","type":"related"}],"termid":"GO:0050450"}


id: GO:0075342
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which an organism effects a change that impairs the structure or function of the host PML body. A PML body is a nuclear body that reacts against SP100 auto-antibodies (PML = promyelocytic leukemia). The host is defined as the larger of the organisms involved in a symbiotic interaction.","definition_xrefs":["GOC:BHF","GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"symbiont-mediated disruption of host cellular anatomical entity","termid":"GO:0052008"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"symbiont-mediated disruption of host cell PML body","synonyms":[{"name":"catabolism by symbiont of host cell PML body","type":"exact"},{"name":"degradation by symbiont of host cell PML body","type":"exact"},{"name":"disassembly by symbiont of host cell PML NB","type":"exact"},{"name":"disassembly by symbiont of host cell PML body","type":"exact"},{"name":"disassembly by symbiont of host cell PML body during symbiotic interaction","type":"exact"},{"name":"disassembly by symbiont of host cell PML nuclear body","type":"exact"},{"name":"disruption by symbiont of host cell PML body","type":"exact"}],"termid":"GO:0075342"}


id: GO:0007387
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process giving rise to specification of cell identity in the anterior compartments of the segmented embryo.","definition_xrefs":["ISBN:0879694238"],"direct_ancestors":[{"relation_name":"is_a","term_name":"compartment pattern specification","termid":"GO:0007386"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"anterior compartment pattern formation","synonyms":[{"name":"anterior compartment pattern specification","type":"related"}],"termid":"GO:0007387"}


id: PBO:0034665
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-thin_stable_microtubule_bundle","termid":"PBO:0034665"}


id: PBO:0044319
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cytochrome c1","termid":"PBO:0044319"}


id: RO:0002009
data:
  {"annotation_feature_type":"gene","cv_name":"relationship","definition":"A relation that applies between a cell(c) and a gene(g) , where the process of 'transcription, DNA templated (GO_0006351)' is occuring in in cell c and that process has input gene g.","direct_ancestors":[{"relation_name":"is_a","term_name":"expresses","termid":"RO:0002292"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cell_expresses","termid":"RO:0002009"}


id: PBO:0068598
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U2 small nuclear 49, pseudogene","termid":"PBO:0068598"}


id: PBO:0072592
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RRS1 divergent transcript","termid":"PBO:0072592"}


id: GO:0048932
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The formation of compact myelin sheaths around the axons of the posterior lateral line nerve.","definition_xrefs":["PMID:12112375"],"direct_ancestors":[{"relation_name":"is_a","term_name":"myelination of lateral line nerve axons","termid":"GO:0048897"},{"relation_name":"part_of","term_name":"posterior lateral line nerve glial cell morphogenesis involved in differentiation","termid":"GO:0048942"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"myelination of posterior lateral line nerve axons","termid":"GO:0048932"}


id: GO:0002268
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which a relatively unspecialized precursor cell acquires the specialized features of a follicular dendritic cell.","definition_xrefs":["ISBN:0781735149","GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"follicular dendritic cell activation","termid":"GO:0002266"},{"relation_name":"is_a","term_name":"cell differentiation","termid":"GO:0030154"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"follicular dendritic cell differentiation","termid":"GO:0002268"}


id: PBO:0004800
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA exonuclease (predicted)","termid":"PBO:0004800"}


id: GO:1902390
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of N-terminal peptidyl-serine acetylation.","definition_xrefs":["PMID:23912279","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of protein acetylation","termid":"GO:1901983"},{"relation_name":"is_a","term_name":"regulation of protein maturation","termid":"GO:1903317"},{"relation_name":"regulates","term_name":"N-terminal peptidyl-serine acetylation","termid":"GO:0017198"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0010467"},{"rel_name":"regulates","termid":"GO:0051604"}],"interesting_parent_ids":["GO:0010467","GO:0051604","GO:0008150"],"is_obsolete":false,"name":"regulation of N-terminal peptidyl-serine acetylation","termid":"GO:1902390"}


id: PBO:0087144
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA-binding subunit of Nrd1 complex; complex interacts with exosome to mediate 3'-end formation of some mRNAs, snRNAs, snoRNAs, and CUTs; interacts with CTD of RNA pol II large subunit Rpo21p at phosphorylated Ser5 to direct transcription termination of non-polyadenylated transcripts; H3K4 trimethylation of transcribed regions by Set1p enhances recruitment of Nrd1p to those sites; role in regulation of mitochondrial abundance and cell size","termid":"PBO:0087144"}


id: PBO:0049944
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"HIC ZBTB transcriptional repressor 2","termid":"PBO:0049944"}


id: PBO:0057584
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 889","termid":"PBO:0057584"}


id: PBO:0027307
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_protein_localization_to_chromatin_at_rDNA","termid":"PBO:0027307"}


id: PBO:0011980
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RecA family ATPase Rad57/Rhp57","termid":"PBO:0011980"}


id: PBO:0027870
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_and_delayed_cell_cycle_arrest_in_mitotic_G1_phase_in_response_to_nitrogen_starvation","termid":"PBO:0027870"}


id: GO:0090125
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The attachment of the pre-synaptic cell to the post-synaptic cell via adhesion molecules that contributes to synapse maturation.","definition_xrefs":["GOC:dph","GOC:tb","GOC:ascb_2009"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell-cell adhesion","termid":"GO:0098609"},{"relation_name":"part_of","term_name":"synapse maturation","termid":"GO:0060074"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0007155"}],"interesting_parent_ids":["GO:0008150","GO:0007155"],"is_obsolete":false,"name":"cell-cell adhesion involved in synapse maturation","synonyms":[{"name":"trans-synaptic adhesion","type":"exact"}],"termid":"GO:0090125"}


id: PBO:0017543
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CCR4-Not complex ubiquitin-protein ligase E3 subunit Mot2 (predicted)","termid":"PBO:0017543"}


id: PBO:0089491
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"delta-1-pyrroline-5-carboxylate dehydrogenase Put2","termid":"PBO:0089491"}


id: GO:0019450
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of L-cysteine into other compounds, including pyruvate.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pyruvate metabolic process","termid":"GO:0006090"},{"relation_name":"is_a","term_name":"L-cysteine catabolic process","termid":"GO:0019448"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044248"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0006520"},{"rel_name":"is_a","termid":"GO:0006790"}],"interesting_parent_ids":["GO:0008150","GO:0044248","GO:0006520","GO:0006790","GO:0044281"],"is_obsolete":false,"name":"L-cysteine catabolic process to pyruvate","secondary_identifiers":["MetaCyc:LCYSDEG-PWY"],"synonyms":[{"name":"L-cysteine breakdown to pyruvate","type":"exact"},{"name":"L-cysteine degradation to pyruvate","type":"exact"}],"termid":"GO:0019450"}


id: PBO:0110030
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CFAP144 pseudogene 2","termid":"PBO:0110030"}


id: PATO:0002006
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A shape that inheres in a 2 dimensional entity, such as a cross section or projection of a 3 dimensional entity.","definition_xrefs":["PATOC:CJM"],"direct_ancestors":[{"relation_name":"is_a","term_name":"shape","termid":"PATO:0000052"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"2-D shape","synonyms":[{"name":"2-D projection","type":"related"},{"name":"cross-sectional","type":"related"}],"termid":"PATO:0002006"}


id: PR:O13940
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A low specificity L-threonine aldolase that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO01047","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"low-specificity L-threonine aldolase (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC23H3.09c","secondary_identifiers":["UniProtKB:O13940"],"synonyms":[{"name":"Spom972h-ltaE","type":"exact"}],"termid":"PR:O13940"}


id: GO:0043412
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id: PBO:0085926
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  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein of unknown function; member of the seripauperin multigene family encoded mainly in subtelomeric regions; SWAT-GFP fusion protein localizes to both the endoplasmic reticulum and vacuole","termid":"PBO:0085926"}


id: GO:0000137
data:
  {"annotated_genes":["SJAG_03555","SJAG_01025","SJAG_01276","SJAG_04095","SJAG_00816","SJAG_04770","SJAG_04112"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[74870,92154],"is_not":false,"summary":null,"term":"GO:0000137"},{"annotations":[70203],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0000136"},{"annotations":[114758,94035,101283,83299],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0140497"}]},"cv_name":"cellular_component","definition":"The Golgi cisterna closest to the endoplasmic reticulum; the first processing compartment through which proteins pass after export from the ER.","definition_xrefs":["ISBN:0815316194"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Golgi cisterna","termid":"GO:0031985"}],"gene_count":7,"genes_by_uniquename":{"SJAG_00816":null,"SJAG_01025":null,"SJAG_01276":null,"SJAG_03555":null,"SJAG_04095":null,"SJAG_04112":null,"SJAG_04770":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"part_of","termid":"GO:0005794"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005737","GO:0005575","GO:0005794"],"is_obsolete":false,"name":"Golgi cis cisterna","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"synonyms":[{"name":"Golgi apparatus cis cisterna","type":"exact"}],"termid":"GO:0000137","terms_by_termid":{"GO:0000136":null,"GO:0000137":null,"GO:0140497":null}}


id: PBO:0064393
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"phosphomevalonate kinase","termid":"PBO:0064393"}


id: PBO:0060127
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MT-ND6 pseudogene 28","termid":"PBO:0060127"}


id: PBO:0055103
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2521","termid":"PBO:0055103"}


id: PBO:0080022
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ubiquitin specific peptidase 17 like family member 8","termid":"PBO:0080022"}


id: PBO:0058989
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MLLT11 transcription factor 7 cofactor","termid":"PBO:0058989"}


id: PR:O74829
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPBC530.15c gene.","definition_xrefs":["UniProtKB:O74829","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized MFS-type transporter C530.15c (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC530.15c","synonyms":[{"name":"Spom972h-SPBC530.15c","type":"exact"}],"termid":"PR:O74829"}


id: GO:0002307
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which a precursor cell type acquires the specialized features of a CD8-positive, alpha-beta regulatory T cell.","definition_xrefs":["GOC:add","ISBN:0781735149"],"direct_ancestors":[{"relation_name":"is_a","term_name":"CD8-positive, alpha-beta T cell differentiation","termid":"GO:0043374"},{"relation_name":"is_a","term_name":"regulatory T cell differentiation","termid":"GO:0045066"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"CD8-positive, alpha-beta regulatory T cell differentiation","synonyms":[{"name":"CD8-positive, alpha-beta regulatory T cell development","type":"related"},{"name":"CD8-positive, alpha-beta regulatory T lymphocyte differentiation","type":"exact"},{"name":"CD8-positive, alpha-beta regulatory T-cell differentiation","type":"exact"},{"name":"CD8-positive, alpha-beta regulatory T-lymphocyte differentiation","type":"exact"}],"termid":"GO:0002307"}


id: GO:0070623
data:
  {"annotated_genes":["SJAG_03538","SJAG_02406"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[110304,84893],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0090180"}]},"cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of thiamine.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of vitamin metabolic process","termid":"GO:0030656"},{"relation_name":"is_a","term_name":"regulation of cellular biosynthetic process","termid":"GO:0031326"},{"relation_name":"is_a","term_name":"regulation of sulfur metabolic process","termid":"GO:0042762"},{"relation_name":"is_a","term_name":"regulation of nitrogen compound metabolic process","termid":"GO:0051171"},{"relation_name":"is_a","term_name":"regulation of alcohol biosynthetic process","termid":"GO:1902930"},{"relation_name":"regulates","term_name":"thiamine biosynthetic process","termid":"GO:0009228"}],"gene_count":2,"genes_by_uniquename":{"SJAG_02406":null,"SJAG_03538":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0006766"},{"rel_name":"regulates","termid":"GO:0044281"},{"rel_name":"regulates","termid":"GO:0006790"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0044281","GO:0006790","GO:0008150","GO:0006766"],"is_obsolete":false,"name":"regulation of thiamine biosynthetic process","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"regulation of thiamin biosynthetic process","type":"exact"},{"name":"regulation of thiamine anabolism","type":"exact"},{"name":"regulation of thiamine biosynthesis","type":"exact"},{"name":"regulation of thiamine formation","type":"exact"},{"name":"regulation of thiamine synthesis","type":"exact"}],"termid":"GO:0070623","terms_by_termid":{"GO:0090180":null}}


id: GO:0035446
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 1-(2-amino-2-deoxy-alpha-D-glucopyranoside)-1D-myo-inositol + L-cysteine + ATP = 1-D-myo-inosityl-2-L-cysteinylamido-2-deoxy-alpha-D-glucopyranoside + AMP + diphosphate + 2 H+. 1-(2-amino-2-deoxy-alpha-D-glucopyranoside)-1D-myo-inositol is also known as glucosaminyl-inositol or GlcN-Ins, and 1-D-myo-inosityl-2-L-cysteinylamido-2-deoxy-alpha-D-glucopyranoside as desacetylmycothiol or Cys-GlcN-Ins.","definition_xrefs":["PMID:12033919","MetaCyc:RXN1G-4","EC:6.3.1.13"],"direct_ancestors":[{"relation_name":"is_a","term_name":"acid-ammonia (or amide) ligase activity","termid":"GO:0016880"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016874"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016874"],"is_obsolete":false,"name":"cysteine-glucosaminylinositol ligase activity","secondary_identifiers":["RHEA:26176"],"synonyms":[{"name":"L-cysteine:1D-myo-inositol 2-amino-2-deoxy-alpha-D-glucopyranoside ligase","type":"related"},{"name":"MshC ligase","type":"related"},{"name":"desacetylmycothiol synthase","type":"related"}],"termid":"GO:0035446"}


id: PBO:0086282
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein with a putative role in response to acid stress; null mutant is sensitive to acetic acid; transcription is regulated by Haa1p and induced in the presence of acetic acid; protein observed in plasma membrane foci in the presence of acetic acid; the authentic, non-tagged protein is detected in a phosphorylated state in highly purified mitochondria in high-throughput studies","termid":"PBO:0086282"}


id: PBO:0075498
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"spermatogenesis associated 45","termid":"PBO:0075498"}


id: GO:0052432
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process by which an organism modulates the frequency, rate or extent of programmed cell death in the symbiont, where programmed cell death proceeds by apoptosis. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction.","definition_xrefs":["GOC:mtg_pamgo"],"gene_count":0,"genotype_count":0,"name":"obsolete modulation by organism of symbiont apoptosis (obsolete GO:0052432)","synonyms":[{"name":"modulation by organism of symbiont apoptosis","type":"exact"},{"name":"modulation by organism of symbiont apoptotic programmed cell death","type":"exact"}],"termid":"GO:0052432"}


id: PBO:0059833
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial methionyl-tRNA formyltransferase","termid":"PBO:0059833"}


id: GO:0006695
data:
  {"annotated_genes":["SJAG_04018"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[74954],"is_not":false,"rel_names":["regulates"],"summary":null,"term":"GO:0045540"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of cholesterol, cholest-5-en-3 beta-ol, the principal sterol of vertebrates and the precursor of many steroids, including bile acids and steroid hormones.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cholesterol metabolic process","termid":"GO:0008203"},{"relation_name":"is_a","term_name":"sterol biosynthetic process","termid":"GO:0016126"},{"relation_name":"is_a","term_name":"secondary alcohol biosynthetic process","termid":"GO:1902653"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04018":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006629"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0044281","GO:0008150","GO:0006629"],"is_obsolete":false,"name":"cholesterol biosynthetic process","references_by_uniquename":{"GO_REF:0000033":null},"synonyms":[{"name":"cholesterol anabolism","type":"exact"},{"name":"cholesterol biosynthesis","type":"exact"},{"name":"cholesterol formation","type":"exact"},{"name":"cholesterol synthesis","type":"exact"}],"termid":"GO:0006695","terms_by_termid":{"GO:0045540":null}}


id: PBO:0056175
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MAF1 homolog, negative regulator of RNA polymerase III","termid":"PBO:0056175"}


id: PBO:0027265
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-delayed_onset_of_cell_cycle_arrest_in_mitotic_G1_phase_in_response_to_pheromone","termid":"PBO:0027265"}


id: GO:0008484
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: RSO-R' + H2O = RSOOH + R'H. This reaction is the hydrolysis of a sulfuric ester bond, an ester formed from sulfuric acid, O=SO(OH)2.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hydrolase activity, acting on ester bonds","termid":"GO:0016788"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016788"},{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0016787","GO:0003824","GO:0016788"],"is_obsolete":false,"name":"sulfuric ester hydrolase activity","secondary_identifiers":["EC:3.1.6.-"],"synonyms":[{"name":"sulfatase activity","type":"exact"},{"name":"sulphuric ester hydrolase activity","type":"exact"}],"termid":"GO:0008484"}


id: GO:0032735
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate, or extent of interleukin-12 production.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of cytokine production","termid":"GO:0001819"},{"relation_name":"is_a","term_name":"regulation of interleukin-12 production","termid":"GO:0032655"},{"relation_name":"positively_regulates","term_name":"interleukin-12 production","termid":"GO:0032615"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"positively_regulates","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0010467","GO:0008150"],"is_obsolete":false,"name":"positive regulation of interleukin-12 production","secondary_identifiers":["GO:2001184","GO:0045084"],"synonyms":[{"name":"activation of interleukin-12 production","type":"narrow"},{"name":"positive regulation of CLMF production","type":"related"},{"name":"positive regulation of IL-12 production","type":"exact"},{"name":"positive regulation of NKSF production","type":"related"},{"name":"positive regulation of interleukin-12 biosynthetic process","type":"narrow"},{"name":"positive regulation of interleukin-12 secretion","type":"narrow"},{"name":"stimulation of interleukin-12 production","type":"narrow"},{"name":"up regulation of interleukin-12 production","type":"exact"},{"name":"up-regulation of interleukin-12 production","type":"exact"},{"name":"upregulation of interleukin-12 production","type":"exact"}],"termid":"GO:0032735"}


id: PBO:0066296
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA binding motif protein Y-linked family 2 member X, pseudogene","termid":"PBO:0066296"}


id: PBO:0090136
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ER protein disulfide isomerase Pdi2","termid":"PBO:0090136"}


id: PBO:0052502
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"kelch like family member 14","termid":"PBO:0052502"}


id: PBO:0002481
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nucleoporin Nup146","termid":"PBO:0002481"}


id: GO:2001056
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of cysteine-type endopeptidase activity.","definition_xrefs":["GOC:obol"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of endopeptidase activity","termid":"GO:0010950"},{"relation_name":"is_a","term_name":"regulation of cysteine-type endopeptidase activity","termid":"GO:2000116"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of cysteine-type endopeptidase activity","synonyms":[{"name":"positive regulation of lysosomal cysteine-type endopeptidase","type":"related"},{"name":"positive regulation of thiol endopeptidase activity","type":"exact"}],"termid":"GO:2001056"}


id: GO:0042255
data:
  {"annotated_genes":["SJAG_03080","SJAG_04492","SJAG_01454","SJAG_01169","SJAG_03466","SJAG_01122","SJAG_00882","SJAG_00841","SJAG_02477","SJAG_01161","SJAG_02803","SJAG_03424","SJAG_00949","SJAG_04847","SJAG_00323","SJAG_04998","SJAG_02754","SJAG_04918","SJAG_01339","SJAG_02436","SJAG_04992","SJAG_02479","SJAG_03012","SJAG_04524","SJAG_02508","SJAG_02340","SJAG_04004","SJAG_02335","SJAG_03666","SJAG_03773","SJAG_01296","SJAG_00523","SJAG_02868","SJAG_05679","SJAG_00722","SJAG_00572","SJAG_03617","SJAG_04940","SJAG_02870","SJAG_03155","SJAG_02184","SJAG_01839","SJAG_04176","SJAG_02427","SJAG_01606","SJAG_00513","SJAG_03458","SJAG_02840","SJAG_01568","SJAG_04746","SJAG_01811","SJAG_04395","SJAG_04066","SJAG_02952","SJAG_00689","SJAG_03846","SJAG_04304","SJAG_02830","SJAG_03798","SJAG_02535","SJAG_04256","SJAG_04599","SJAG_01548","SJAG_04180","SJAG_02759","SJAG_05248","SJAG_02390","SJAG_04108","SJAG_02749","SJAG_04669","SJAG_01420"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[105142],"is_not":false,"summary":null,"term":"GO:0042255"},{"annotations":[96804,103836,107956,78112,98781,112453,107303,112452,109469,113354,95369,94127,96952,85496,88351,99810,88835,89232,105450,108688,102373,115613,96617],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:1902626"},{"annotations":[83454,98782,88039,101560,93196,90905,107225,107226,113276,100457,94128,100377,100612,101147,95646,113275],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0180023"},{"annotations":[91961],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0042256"},{"annotations":[108529,104816],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0061668"},{"annotations":[98747,98746,112320,112393,89399,99984,114485,101902],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0000027"},{"annotations":[74169,70005,73052,73993,90823,74164,70167,72442,71611,75677,115326,75721,76160,71721,111199,111200,74584,85820,72830,74277],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0000028"},{"annotations":[109669,72626],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0034462"}]},"cv_name":"biological_process","definition":"The aggregation, arrangement and bonding together of the mature ribosome and of its subunits.","definition_xrefs":["GOC:ma","PMID:30467428"],"direct_ancestors":[{"relation_name":"is_a","term_name":"non-membrane-bounded organelle assembly","termid":"GO:0140694"},{"relation_name":"part_of","term_name":"ribosome biogenesis","termid":"GO:0042254"}],"gene_count":71,"genes_by_uniquename":{"SJAG_00323":null,"SJAG_00513":null,"SJAG_00523":null,"SJAG_00572":null,"SJAG_00689":null,"SJAG_00722":null,"SJAG_00841":null,"SJAG_00882":null,"SJAG_00949":null,"SJAG_01122":null,"SJAG_01161":null,"SJAG_01169":null,"SJAG_01296":null,"SJAG_01339":null,"SJAG_01420":null,"SJAG_01454":null,"SJAG_01548":null,"SJAG_01568":null,"SJAG_01606":null,"SJAG_01811":null,"SJAG_01839":null,"SJAG_02184":null,"SJAG_02335":null,"SJAG_02340":null,"SJAG_02390":null,"SJAG_02427":null,"SJAG_02436":null,"SJAG_02477":null,"SJAG_02479":null,"SJAG_02508":null,"SJAG_02535":null,"SJAG_02749":null,"SJAG_02754":null,"SJAG_02759":null,"SJAG_02803":null,"SJAG_02830":null,"SJAG_02840":null,"SJAG_02868":null,"SJAG_02870":null,"SJAG_02952":null,"SJAG_03012":null,"SJAG_03080":null,"SJAG_03155":null,"SJAG_03424":null,"SJAG_03458":null,"SJAG_03466":null,"SJAG_03617":null,"SJAG_03666":null,"SJAG_03773":null,"SJAG_03798":null,"SJAG_03846":null,"SJAG_04004":null,"SJAG_04066":null,"SJAG_04108":null,"SJAG_04176":null,"SJAG_04180":null,"SJAG_04256":null,"SJAG_04304":null,"SJAG_04395":null,"SJAG_04492":null,"SJAG_04524":null,"SJAG_04599":null,"SJAG_04669":null,"SJAG_04746":null,"SJAG_04847":null,"SJAG_04918":null,"SJAG_04940":null,"SJAG_04992":null,"SJAG_04998":null,"SJAG_05248":null,"SJAG_05679":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0044085"},{"rel_name":"part_of","termid":"GO:0042254"}],"interesting_parent_ids":["GO:0008150","GO:0044085","GO:0042254"],"is_obsolete":false,"name":"ribosome assembly","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"secondary_identifiers":["GO:0042257"],"synonyms":[{"name":"ribosomal subunit assembly","type":"narrow"}],"termid":"GO:0042255","terms_by_termid":{"GO:0000027":null,"GO:0000028":null,"GO:0034462":null,"GO:0042255":null,"GO:0042256":null,"GO:0061668":null,"GO:0180023":null,"GO:1902626":null}}


id: PATO:0001259
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A color consisting of purple color and low brightness.","definition_xrefs":["PATOC:GVG"],"direct_ancestors":[{"relation_name":"is_a","term_name":"purple","termid":"PATO:0000951"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dark purple","termid":"PATO:0001259"}


id: PBO:0028824
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_cytoskeleton_morphology","termid":"PBO:0028824"}


id: PBO:0064374
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PMPCA pseudogene 1","termid":"PBO:0064374"}


id: GO:0102014
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: ATP(4-) + beta-D-galactoside + H2O = ADP(3-) + hydrogenphosphate + beta-D-galactoside + H+.","definition_xrefs":["EC:3.6.3.17"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ABC-type monosaccharide transporter activity","termid":"GO:0015407"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0022857"}],"interesting_parent_ids":["GO:0005215","GO:0003674","GO:0022857"],"is_obsolete":false,"name":"beta-D-galactose-importing ATPase activity","secondary_identifiers":["MetaCyc:ABC-18-RXN","RHEA:30011"],"termid":"GO:0102014"}


id: MOD:00710
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively adds a proton and replaces two hydrogen atoms with two methyl groups.","definition_xrefs":["PubMed:18688235"],"direct_ancestors":[{"relation_name":"is_a","term_name":"dimethylated residue","termid":"MOD:00429"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:00427"}],"interesting_parent_ids":["MOD:00427"],"is_obsolete":false,"name":"protonated-dimethylated residue","synonyms":[{"name":"Me2+Res","type":"exact"}],"termid":"MOD:00710"}


id: PR:O13639
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"An adenosylhomocysteinase that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO02844","PANTHER:PTHR23420:SF0","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"adenosylhomocysteinase (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC8D2.18c","secondary_identifiers":["UniProtKB:O13639"],"synonyms":[{"name":"AdoHcyase (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"S-adenosyl-L-homocysteine hydrolase (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-AHCY","type":"exact"}],"termid":"PR:O13639"}


id: GO:1902678
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"Any ciliary basal body that is part of a right caudal flagellum found in Giardia species (trophozoite stage).","definition_xrefs":["ISBN:9780124260207","GOC:giardia","GO_REF:0000064","PMID:5961344","GOC:TermGenie","PMID:16607022"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ciliary basal body","termid":"GO:0036064"},{"relation_name":"part_of","term_name":"right caudal flagellum","termid":"GO:0097561"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0015630"}],"interesting_parent_ids":["GO:0015630","GO:0005575"],"is_obsolete":false,"name":"right caudal basal body","synonyms":[{"name":"cilial basal body of right caudal cilium","type":"exact"},{"name":"cilial basal body of right caudal flagellum","type":"exact"},{"name":"ciliary basal body of right caudal cilium","type":"exact"},{"name":"ciliary basal body of right caudal flagellum","type":"exact"},{"name":"cilium basal body of right caudal cilium","type":"exact"},{"name":"cilium basal body of right caudal flagellum","type":"exact"},{"name":"microtubule basal body of right caudal cilium","type":"exact"},{"name":"microtubule basal body of right caudal flagellum","type":"exact"},{"name":"right caudal flagellum ciliary basal body","type":"exact"}],"termid":"GO:1902678"}


id: GO:0032067
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the endonucleolytic cleavage of DNA in a site specific manner. Cleavage is dependent on the presence of a specific recognition site in the DNA which must be modified (e.g. methylated, hydroxymethylated, glucosyl-hydroxymethylated).","definition_xrefs":["PMID:12654995"],"direct_ancestors":[{"relation_name":"is_a","term_name":"restriction endodeoxyribonuclease activity","termid":"GO:0015666"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0140097"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0016788"}],"interesting_parent_ids":["GO:0140097","GO:0003824","GO:0003674","GO:0016787","GO:0016788"],"is_obsolete":false,"name":"type IV site-specific deoxyribonuclease activity","synonyms":[{"name":"type IV restriction enzyme activity","type":"exact"}],"termid":"GO:0032067"}


id: PR:O60083
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- tfb6 gene.","definition_xrefs":["PRO:DNx","UniProtKB:O60083"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized protein C1494.09c (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC1494.09c","synonyms":[{"name":"Spom972h-tfb6","type":"exact"}],"termid":"PR:O60083"}


id: GO:0000320
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The resumption of the mitotic cell division cycle by cells that were in a quiescent or other non-dividing state.","definition_xrefs":["GOC:krc"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell cycle process","termid":"GO:0022402"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0007049"}],"interesting_parent_ids":["GO:0008150","GO:0007049"],"is_obsolete":false,"name":"re-entry into mitotic cell cycle","termid":"GO:0000320"}


id: GO:0022880
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the PEP-dependent, phosphoryl transfer-driven transport of substances across a membrane. The transport happens by catalysis of the reaction: protein N-phosphohistidine + N-acetylglucosamine(out) = protein histidine + N-acetylglucosamine phosphate(in). This differs from primary and secondary active transport in that the solute is modified during transport.","definition_xrefs":["GOC:mtg_transport","ISBN:0815340729"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein-N(PI)-phosphohistidine-sugar phosphotransferase activity","termid":"GO:0008982"},{"relation_name":"is_a","term_name":"N-acetylglucosamine transmembrane transporter activity","termid":"GO:0015572"},{"relation_name":"is_a","term_name":"trehalose transmembrane transporter activity","termid":"GO:0015574"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005215"}],"interesting_parent_ids":["GO:0003824","GO:0005215","GO:0022857","GO:0016740","GO:0003674"],"is_obsolete":false,"name":"protein-N(PI)-phosphohistidine-N-acetylglucosamine phosphotransferase system transporter activity","synonyms":[{"name":"N-acetylglucosamine PTS transporter activity","type":"exact"}],"termid":"GO:0022880"}


id: GO:0030303
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the cleavage of peptide bonds in collagen with preferential cleavage where P1', P2' and P3' are hydrophobic residues; action on collagen types III, IV and V is weak.","definition_xrefs":["GOC:curators"],"gene_count":0,"genotype_count":0,"name":"obsolete stromelysin 2 activity (obsolete GO:0030303)","synonyms":[{"name":"MMP-10","type":"exact"},{"name":"matrix metalloproteinase 10 activity","type":"related"},{"name":"proteoglycanase 2","type":"related"},{"name":"stromelysin 2 activity","type":"exact"},{"name":"transin 2 activity","type":"related"}],"termid":"GO:0030303"}


id: PBO:0088508
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"prefoldin subunit Pfd3","termid":"PBO:0088508"}


id: PBO:0075381
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SRY-box transcription factor 21","termid":"PBO:0075381"}


id: GO:0160008
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: H2O + N6-(2E)-butenoyl-L-lysyl-[protein] = (2E)-2-butenoate + L-lysyl-[protein].","definition_xrefs":["PMID:28497810","PMID:34608293","PMID:30279482"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides","termid":"GO:0016811"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016810"},{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016787","GO:0016810","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"protein decrotonylase activity","secondary_identifiers":["RHEA:69172"],"termid":"GO:0160008"}


id: PBO:0041928
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chromobox 1 pseudogene 3","termid":"PBO:0041928"}


id: PBO:0004032
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"translocon subunit Sec61 homolog (predicted)","termid":"PBO:0004032"}


id: GO:0035681
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The series of molecular signals initiated by a ligand binding to toll-like receptor 15.","definition_xrefs":["GOC:pde"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell surface toll-like receptor signaling pathway","termid":"GO:0140895"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"toll-like receptor 15 signaling pathway","synonyms":[{"name":"TLR15 signaling pathway","type":"exact"},{"name":"toll-like receptor 15 signalling pathway","type":"exact"}],"termid":"GO:0035681"}


id: GO:1901016
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of potassium ion transmembrane transporter activity.","definition_xrefs":["GOC:BHF","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of monoatomic ion transmembrane transporter activity","termid":"GO:0032412"},{"relation_name":"is_a","term_name":"regulation of potassium ion transmembrane transport","termid":"GO:1901379"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0055085"},{"rel_name":"regulates","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0008150","GO:0055085","GO:0006810"],"is_obsolete":false,"name":"regulation of potassium ion transmembrane transporter activity","synonyms":[{"name":"regulation of potassium transporter activity","type":"exact"}],"termid":"GO:1901016"}


id: PBO:0078314
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-Asp (GTC) 10-1","termid":"PBO:0078314"}


id: PBO:0029024
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_chromatin_silencing_at_silent_mating-type_cassette","termid":"PBO:0029024"}


id: PBO:0043663
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"COQ7 divergent transcript","termid":"PBO:0043663"}


id: GO:1990124
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A ribonucleoprotein complex containing both protein and messenger RNA (mRNA) molecules.","definition_xrefs":["GOC:bf","PMID:15574591","PMID:21915786"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ribonucleoprotein complex","termid":"GO:1990904"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0032991","GO:0005575"],"is_obsolete":false,"name":"messenger ribonucleoprotein complex","synonyms":[{"name":"mRNA-protein complex","type":"exact"},{"name":"mRNP","type":"exact"},{"name":"mRNP complex","type":"exact"},{"name":"messenger ribonucleoprotein particle","type":"related"}],"termid":"GO:1990124"}


id: PBO:0109382
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"testis expressed transcript, Y-linked 13","termid":"PBO:0109382"}


id: PBO:0090958
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial ribosomal protein subunit S19","termid":"PBO:0090958"}


id: GO:0019553
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of glutamate, via the intermediate L-citramalate.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"glutamate catabolic process","termid":"GO:0006538"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006520"},{"rel_name":"is_a","termid":"GO:0044248"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0044248","GO:0008150","GO:0006520","GO:0044281"],"is_obsolete":false,"name":"glutamate catabolic process via L-citramalate","secondary_identifiers":["MetaCyc:GLUDEG-II-PWY"],"synonyms":[{"name":"glutamate breakdown via L-citramalate","type":"exact"},{"name":"glutamate degradation via L-citramalate","type":"exact"}],"termid":"GO:0019553"}


id: GO:0051007
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: squalene = hop-22(29)-ene.","definition_xrefs":["EC:5.4.99.17"],"direct_ancestors":[{"relation_name":"is_a","term_name":"intramolecular transferase activity","termid":"GO:0016866"},{"relation_name":"is_a","term_name":"squalene cyclase activity","termid":"GO:0034072"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0009975"},{"rel_name":"is_a","termid":"GO:0016853"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016853","GO:0003674","GO:0003824","GO:0009975"],"is_obsolete":false,"name":"squalene-hopene cyclase activity","secondary_identifiers":["MetaCyc:5.4.99.17-RXN","RHEA:17637"],"synonyms":[{"name":"squalene mutase (cyclizing)","type":"related"},{"name":"squalene:hopene cyclase activity","type":"exact"}],"termid":"GO:0051007"}


id: PR:Q9P3W5
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- tel2 gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q9P3W5"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DNA replication checkpoint protein tel2 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC458.03","synonyms":[{"name":"Spom972h-tel2","type":"exact"}],"termid":"PR:Q9P3W5"}


id: GO:0042258
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The incorporation of molybdenum into a protein via L-serinyl molybdopterin guanine dinucleotide.","definition_xrefs":["PDB:1EU1","PMID:8658132","RESID:AA0319"],"direct_ancestors":[{"relation_name":"is_a","term_name":"peptidyl-serine modification","termid":"GO:0018209"},{"relation_name":"is_a","term_name":"molybdenum incorporation into molybdenum-molybdopterin complex","termid":"GO:0018315"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"molybdenum incorporation via L-serinyl molybdopterin guanine dinucleotide","termid":"GO:0042258"}


id: GO:0061379
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of the inferior colliculus over time, from its formation to the mature structure. The inferior colliculus (IC) (Latin, lower hill) is the principal midbrain nucleus of the auditory pathway and receives input from several more peripheral brainstem nuclei in the auditory pathway, as well as inputs from the auditory cortex. The inferior colliculus has three subdivisions: the central nucleus (CIC), a dorsal cortex (DCIC) by which it is surrounded, and an external cortex (ICX) which is located laterally.","definition_xrefs":["GOC:dph","GOC:yaf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"anatomical structure development","termid":"GO:0048856"},{"relation_name":"part_of","term_name":"corpora quadrigemina development","termid":"GO:0061378"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"inferior colliculus development","termid":"GO:0061379"}


id: PBO:0050106
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"high mobility group box 1 pseudogene 16","termid":"PBO:0050106"}


id: FYPO:0005039
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which the phosphorylation of the serine residue at position 2 within one or more copies of the heptapeptide repeat (YSPTSPS) of the C-terminal domain of RNA polymerase II occurs to a lower extent than normal when the cell is subject to nitrogen starvation.","definition_xrefs":["GO:0071619","PomBase:mah","PMID:22144909"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased protein phosphorylation during nitrogen starvation","termid":"FYPO:0005034"},{"relation_name":"is_a","term_name":"abnormal RNA polymerase II C-terminal domain phosphorylation","termid":"FYPO:0007410"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0002494"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0002274"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0002274","FYPO:0001985","FYPO:0002494","FYPO:0005447"],"is_obsolete":false,"name":"decreased phosphorylation of RNA polymerase II C-terminal domain serine 2 residues during nitrogen starvation","synonyms":[{"name":"decreased phosphorylation of RNA polymerase II C-terminal domain serine 2 residues during nitrogen depletion","type":"exact"},{"name":"decreased phosphorylation of RNA polymerase II C-terminal domain serine 2 residues during nitrogen deprivation","type":"exact"},{"name":"reduced phosphorylation of RNA polymerase II CTD serine 2 residues during nitrogen starvation","type":"exact"}],"termid":"FYPO:0005039"}


id: PBO:0091527
data:
  {"annotation_feature_type":"gene","cv_name":"name_description","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Schizosaccharomyces MicroProtein","termid":"PBO:0091527"}


id: PBO:0061143
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NME/NM23 nucleoside diphosphate kinase 6","termid":"PBO:0061143"}


id: PBO:0076805
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tektin 4 pseudogene 2","termid":"PBO:0076805"}


id: PBO:0041383
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chromosome 5 open reading frame 22","termid":"PBO:0041383"}


id: FYPO:0001424
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to the nucleus is abolished.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal protein localization to nucleus during vegetative growth","termid":"FYPO:0001129"},{"relation_name":"is_a","term_name":"abolished protein localization to nucleus","termid":"FYPO:0003450"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000138","FYPO:0000002","FYPO:0001320","FYPO:0005447"],"is_obsolete":false,"name":"abolished protein localization to nucleus during vegetative growth","synonyms":[{"name":"abolished protein localisation to nucleus during vegetative growth","type":"exact"},{"name":"abolished protein localization to nucleus during mitotic cell cycle","type":"related"},{"name":"nuclear exclusion during vegetative growth","type":"related"},{"name":"nuclear protein exclusion during vegetative growth","type":"related"},{"name":"protein localization to nucleus abolished during vegetative growth","type":"exact"}],"termid":"FYPO:0001424"}


id: PBO:0078966
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-Ser (AGA) 5-1","termid":"PBO:0078966"}


id: GO:0044874
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process in which a lipoprotein is transported to, or maintained in, a specific location in an outer membrane.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"lipoprotein localization to membrane","termid":"GO:0044873"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0051179"],"is_obsolete":false,"name":"lipoprotein localization to outer membrane","termid":"GO:0044874"}


id: GO:0007294
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The cell fate determination process in which a germarium-derived cell becomes capable of differentiating autonomously into an oocyte cell regardless of its environment; upon determination, the cell fate cannot be reversed. An example of this is found in Drosophila melanogaster.","definition_xrefs":["GOC:mtg_sensu","ISBN:0879694238"],"direct_ancestors":[{"relation_name":"is_a","term_name":"developmental process involved in reproduction","termid":"GO:0003006"},{"relation_name":"is_a","term_name":"cellular process involved in reproduction in multicellular organism","termid":"GO:0022412"},{"relation_name":"is_a","term_name":"oocyte fate determination","termid":"GO:0030716"},{"relation_name":"part_of","term_name":"germarium-derived oocyte differentiation","termid":"GO:0030706"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"germarium-derived oocyte fate determination","secondary_identifiers":["GO:0016350"],"synonyms":[{"name":"maintenance of oocyte identity","type":"related"},{"name":"oocyte cell fate determination","type":"related"}],"termid":"GO:0007294"}


id: PR:P0CT74
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- rps1102 gene.","definition_xrefs":["PRO:DNx","UniProtKB:P0CT74"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"40S ribosomal protein S11-B (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC144.11","synonyms":[{"name":"Spom972h-rps1102","type":"exact"}],"termid":"PR:P0CT74"}


id: PBO:0047615
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"FIBCD1 antisense RNA 1","termid":"PBO:0047615"}


id: PBO:0056668
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mediator complex subunit 28 pseudogene 6","termid":"PBO:0056668"}


id: GO:0000834
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: ATP + 5-diphospho-1D-myo-inositol (1,2,3,4,6)pentakisphosphate = 5,6-bisdiphosphoinositol-1D-myoinositol (1,2,3,4)tetrakisphosphate.","definition_xrefs":["GOC:elh","PMID:16429326"],"direct_ancestors":[{"relation_name":"is_a","term_name":"inositol heptakisphosphate kinase activity","termid":"GO:0000829"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016301"}],"interesting_parent_ids":["GO:0016740","GO:0003674","GO:0016301","GO:0003824"],"is_obsolete":false,"name":"inositol heptakisphosphate 6-kinase activity","termid":"GO:0000834"}


id: PBO:0075613
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"secreted phosphoprotein 1","termid":"PBO:0075613"}


id: PBO:0057705
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 1292","termid":"PBO:0057705"}


id: PBO:0088602
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"7,8-diamino-pelargonic acid aminotransferase (DAPA)","termid":"PBO:0088602"}


id: FYPO:0001202
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular response phenotype observed in the vegetative growth phase of the life cycle in which the cellular response to calcium starvation is normal (i.e. indistinguishable from wild type).","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal cellular response to stress during vegetative growth","termid":"FYPO:0000968"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000298"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001312"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0000257","FYPO:0000002","FYPO:0001312","FYPO:0000298"],"is_obsolete":false,"name":"normal cellular response to calcium starvation","synonyms":[{"name":"normal cellular response to calcium depletion","type":"exact"},{"name":"normal cellular response to calcium deprivation","type":"exact"},{"name":"normal cellular response to calcium ion starvation","type":"exact"},{"name":"normal cellular response to calcium starvation during mitotic cell cycle","type":"related"},{"name":"normal cellular response to calcium starvation during vegetative growth","type":"exact"}],"termid":"FYPO:0001202"}


id: GO:0010044
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an aluminum ion stimulus.","definition_xrefs":["GOC:sm"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to metal ion","termid":"GO:0010038"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"response to aluminum ion","synonyms":[{"name":"response to aluminium ion","type":"exact"},{"name":"response to aluminum","type":"exact"}],"termid":"GO:0010044"}


id: PBO:0090485
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"thioredoxin family protein Mpd1","termid":"PBO:0090485"}


id: GO:0010892
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of mitochondrial translation as a result of a stimulus indicating the organism is under stress.","definition_xrefs":["GOC:dph","GOC:tb","GOC:jp","PMID:8830768"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of translation in response to stress","termid":"GO:0032056"},{"relation_name":"is_a","term_name":"positive regulation of mitochondrial translation","termid":"GO:0070131"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0140053"},{"rel_name":"positively_regulates","termid":"GO:0010467"},{"rel_name":"regulates","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0140053","GO:0010467","GO:0008150"],"is_obsolete":false,"name":"positive regulation of mitochondrial translation in response to stress","termid":"GO:0010892"}


id: GO:0030706
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which one relatively unspecialized immature cystocyte of the germ-line cyst in the germarium acquires the specialized features of an oocyte. An example of this process can be found in Drosophila melanogaster.","definition_xrefs":["GOC:mtg_sensu","ISBN:0879694238"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oocyte differentiation","termid":"GO:0009994"},{"relation_name":"part_of","term_name":"germarium-derived egg chamber formation","termid":"GO:0007293"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"germarium-derived oocyte differentiation","synonyms":[{"name":"oocyte cell differentiation","type":"related"}],"termid":"GO:0030706"}


id: PBO:0052920
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"keratin associated protein 19-3","termid":"PBO:0052920"}


id: GO:0060622
data:
  {"annotated_genes":["SJAG_04666","SJAG_04771"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[83315,88383],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0140748"}]},"cv_name":"biological_process","definition":"Any process that modulates the rate, frequency or extent of ascospore wall beta-glucan biosynthetic process, the chemical reactions and pathways resulting in the formation of beta-glucans, compounds composed of glucose residues linked by beta-D-glucosidic bonds, found in the walls of ascospores.","definition_xrefs":["GOC:dph","GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of cell cycle process","termid":"GO:0010564"},{"relation_name":"is_a","term_name":"regulation of fungal-type cell wall beta-glucan biosynthetic process","termid":"GO:0090093"},{"relation_name":"is_a","term_name":"regulation of reproductive process","termid":"GO:2000241"},{"relation_name":"regulates","term_name":"ascospore wall beta-glucan biosynthetic process","termid":"GO:0034412"}],"gene_count":2,"genes_by_uniquename":{"SJAG_04666":null,"SJAG_04771":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0044085"},{"rel_name":"regulates","termid":"GO:0005975"},{"rel_name":"regulates","termid":"GO:0007049"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0071554"}],"interesting_parent_ids":["GO:0044085","GO:0071554","GO:0005975","GO:0008150","GO:0007049"],"is_obsolete":false,"name":"regulation of ascospore wall beta-glucan biosynthetic process","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0060622","terms_by_termid":{"GO:0140748":null}}


id: GO:0048717
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which the anatomical structures of the anterior cibarial plate are generated and organized.","definition_xrefs":["GOC:rc"],"direct_ancestors":[{"relation_name":"is_a","term_name":"post-embryonic animal morphogenesis","termid":"GO:0009886"},{"relation_name":"part_of","term_name":"clypeo-labral disc morphogenesis","termid":"GO:0007453"},{"relation_name":"part_of","term_name":"anterior cibarial plate development","termid":"GO:0048722"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"anterior cibarial plate morphogenesis","termid":"GO:0048717"}


id: PBO:0057652
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 1245a","termid":"PBO:0057652"}


id: MOD:01330
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"OBSOLETE because identical with MOD:01094. Remap to MOD:01094","definition_xrefs":["PubMed:18688235"],"gene_count":0,"genotype_count":0,"name":"OBSOLETE MOD:01330 iodoacetic acid -site K (obsolete MOD:01330)","synonyms":[{"name":"Carboxymethyl","type":"related"},{"name":"Iodoacetic acid derivative","type":"related"}],"termid":"MOD:01330"}


id: SO:0002168
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"An RNA_thermometer is a cis element in the 5' end of an mRNA that can change its secondary structure in response to temperature and coordinate temperature-dependent gene expression.","definition_xrefs":["PMID:22421878"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mRNA_region","termid":"SO:0000836"},{"relation_name":"part_of","term_name":"mRNA","termid":"SO:0000234"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA_thermometer","secondary_identifiers":["https://en.wikipedia.org/wiki/RNA_thermometer"],"synonyms":[{"name":"RNA thermometer","type":"exact"},{"name":"RNA thermoregulator","type":"exact"},{"name":"RNAT","type":"exact"},{"name":"thermoregulator","type":"exact"}],"termid":"SO:0002168"}


id: PBO:0062892
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"OXA1L mitochondrial inner membrane protein","termid":"PBO:0062892"}


id: PBO:0039843
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ARHGAP11A-SCG5 readthrough","termid":"PBO:0039843"}


id: PBO:0003767
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long-chain-fatty-acid-CoA ligase Lcf1","termid":"PBO:0003767"}


id: GO:0044548
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a S100 protein. S100 is a small calcium and zinc binding protein produced in astrocytes that is implicated in Alzheimer's disease, Down Syndrome and ALS.","definition_xrefs":["GOC:jid"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein binding","termid":"GO:0005515"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0005515"}],"interesting_parent_ids":["GO:0005515","GO:0003674","GO:0005488"],"is_obsolete":false,"name":"S100 protein binding","secondary_identifiers":["GO:0048154","GO:0048155"],"synonyms":[{"name":"S100 alpha binding","type":"narrow"},{"name":"S100 beta binding","type":"narrow"},{"name":"S100 binding","type":"exact"}],"termid":"GO:0044548"}


id: PBO:0028452
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-elongated_multinucleate_multiseptate_cell,_single_septa_between_nuclei","termid":"PBO:0028452"}


id: PBO:0090193
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"meiosis specific cyclin Rem1","termid":"PBO:0090193"}


id: PBO:0028480
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-actin_cables_absent_from_cell","termid":"PBO:0028480"}


id: PBO:0069878
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 1165, pseudogene","termid":"PBO:0069878"}


id: PBO:0039030
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ArfGAP with GTPase domain, ankyrin repeat and PH domain 6","termid":"PBO:0039030"}


id: PBO:0061429
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nuclear receptor subfamily 1 group H member 2","termid":"PBO:0061429"}


id: PBO:0029111
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_mitotic_cell_cycle_phase","termid":"PBO:0029111"}


id: GO:0017149
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. (Was not defined before being made obsolete).","definition_xrefs":["GOC:ai"],"gene_count":0,"genotype_count":0,"name":"obsolete protein biosynthetic process inhibitor activity (obsolete GO:0017149)","synonyms":[{"name":"protein anabolism inhibitor activity","type":"exact"},{"name":"protein biosynthetic process inhibitor activity","type":"exact"},{"name":"protein formation inhibitor activity","type":"exact"},{"name":"protein synthesis inhibitor activity","type":"exact"}],"termid":"GO:0017149"}


id: PBO:0074017
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"solute carrier family 25 member 11","termid":"PBO:0074017"}


id: GO:0060353
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the rate, frequency or extent of cell adhesion molecule production. Cell adhesion molecule production is the appearance of a cell adhesion molecule as a result of its biosynthesis or a decrease in its catabolism.","definition_xrefs":["GOC:BHF","GOC:rl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of cellular process","termid":"GO:0050794"},{"relation_name":"regulates","term_name":"cell adhesion molecule production","termid":"GO:0060352"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of cell adhesion molecule production","termid":"GO:0060353"}


id: PBO:0078014
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"T cell receptor alpha joining 4","termid":"PBO:0078014"}


id: GO:0052219
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The directed movement of a motile cell or organism on, within or near a second organism towards a lower level of a physical stimulus involved in energy generation, such as light, oxygen, and oxidizable substrates, where the two organisms are in a symbiotic interaction.","definition_xrefs":["GOC:mtg_pamgo_17jul06"],"gene_count":0,"genotype_count":0,"name":"obsolete negative energy taxis in environment of other organism involved in symbiotic interaction (obsolete GO:0052219)","synonyms":[{"name":"negative energy taxis in environment of other organism during symbiotic interaction","type":"related"},{"name":"negative energy taxis in response to environment of other organism","type":"exact"}],"termid":"GO:0052219"}


id: GO:1900640
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of austinol biosynthetic process.","definition_xrefs":["GOC:TermGenie","GOC:di"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of biosynthetic process","termid":"GO:0009889"},{"relation_name":"regulates","term_name":"austinol biosynthetic process","termid":"GO:1900560"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of austinol biosynthetic process","synonyms":[{"name":"regulation of austinol anabolism","type":"exact"},{"name":"regulation of austinol biosynthesis","type":"exact"},{"name":"regulation of austinol formation","type":"exact"},{"name":"regulation of austinol synthesis","type":"exact"}],"termid":"GO:1900640"}


id: PBO:0000263
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"GTPase activating protein (predicted)","termid":"PBO:0000263"}


id: PBO:0073924
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SLC16A12 antisense RNA 1","termid":"PBO:0073924"}


id: GO:1900704
data:
  {"annotated_genes":["SJAG_00792"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[90112],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1905569"}]},"cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of siderophore biosynthetic process.","definition_xrefs":["GOC:di","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of cellular biosynthetic process","termid":"GO:0031326"},{"relation_name":"is_a","term_name":"regulation of amide metabolic process","termid":"GO:0034248"},{"relation_name":"is_a","term_name":"regulation of secondary metabolite biosynthetic process","termid":"GO:1900376"},{"relation_name":"regulates","term_name":"siderophore biosynthetic process","termid":"GO:0019290"}],"gene_count":1,"genes_by_uniquename":{"SJAG_00792":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0019748"}],"interesting_parent_ids":["GO:0019748","GO:0008150"],"is_obsolete":false,"name":"regulation of siderophore biosynthetic process","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"regulation of siderochrome biosynthesis","type":"narrow"},{"name":"regulation of siderochrome biosynthetic process","type":"narrow"},{"name":"regulation of siderophore anabolism","type":"exact"},{"name":"regulation of siderophore biosynthesis","type":"exact"},{"name":"regulation of siderophore biosynthetic process, peptide formation","type":"narrow"},{"name":"regulation of siderophore biosynthetic process, peptide modification","type":"narrow"},{"name":"regulation of siderophore formation","type":"exact"},{"name":"regulation of siderophore synthesis","type":"exact"}],"termid":"GO:1900704","terms_by_termid":{"GO:1905569":null}}


id: PBO:0084815
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Mitochondrial protein of unknown function; originally identified based on homology to <i>Ashbya gossypii</i> and other related yeasts; SWAT-GFP and mCherry fusion proteins localize to the vacuole, while SWAT-GFP fusion also localizes to the endoplasmic reticulum","termid":"PBO:0084815"}


id: PATO:0001653
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"An alignment quality inhering in a bearer by virtue of the bearer's being in a proper spatial positioning with respect to an additional entity.","definition_xrefs":["PATO:GVG"],"direct_ancestors":[{"relation_name":"is_a","term_name":"alignment","termid":"PATO:0001652"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"aligned with","synonyms":[{"name":"aligned ","type":"exact"},{"name":"aligned to","type":"related"}],"termid":"PATO:0001653"}


id: PBO:0071296
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L26 pseudogene 19","termid":"PBO:0071296"}


id: PBO:0004983
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pseudogene (predicted)","termid":"PBO:0004983"}


id: GO:0045945
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of transcription mediated by RNA polymerase III.","definition_xrefs":["GOC:go_curators","GOC:txnOH"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of transcription by RNA polymerase III","termid":"GO:0006359"},{"relation_name":"is_a","term_name":"positive regulation of DNA-templated transcription","termid":"GO:0045893"},{"relation_name":"positively_regulates","term_name":"transcription by RNA polymerase III","termid":"GO:0006383"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0006351"},{"rel_name":"is_a","termid":"GO:0006355"},{"rel_name":"positively_regulates","termid":"GO:0006351"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0010467","GO:0008150","GO:0006351","GO:0006355"],"is_obsolete":false,"name":"positive regulation of transcription by RNA polymerase III","synonyms":[{"name":"activation of transcription from RNA polymerase III promoter","type":"narrow"},{"name":"positive regulation of transcription from Pol III promoter","type":"exact"},{"name":"positive regulation of transcription from RNA polymerase III promoter","type":"exact"},{"name":"stimulation of transcription from RNA polymerase III promoter","type":"narrow"},{"name":"up regulation of transcription from RNA polymerase III promoter","type":"exact"},{"name":"up-regulation of transcription from RNA polymerase III promoter","type":"exact"},{"name":"upregulation of transcription from RNA polymerase III promoter","type":"exact"}],"termid":"GO:0045945"}


id: PBO:0085297
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Pheromone-regulated protein; predicted to have one transmembrane segment; promoter contains Gcn4p binding elements; in W303 strain one continuous open reading frame comprising of YDL037C, the intergenic region and YDL039C encodes the IMI1","termid":"PBO:0085297"}


id: PBO:0062186
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 4 subfamily N member 5","termid":"PBO:0062186"}


id: PBO:0030051
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_duration_of_mitotic_anaphase_A","termid":"PBO:0030051"}


id: PBO:0060664
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nicastrin pseudogene 1","termid":"PBO:0060664"}


id: GO:0047491
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: polysaccharides containing a terminal alpha-L-guluronate group = oligosaccharides with 4-deoxy-alpha-L-erythro-hex-4-enuronosyl end. This reaction is the eliminative cleavage of polysaccharides containing a terminal a-L-guluronate group, to give oligopolysaccharides with 4-deoxy-a-L-erythro-hex-4-enuronosyl groups at their nonreducing ends.","definition_xrefs":["EC:4.2.2.11"],"direct_ancestors":[{"relation_name":"is_a","term_name":"carbon-oxygen lyase activity, acting on polysaccharides","termid":"GO:0016837"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016829"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016829"],"is_obsolete":false,"name":"poly(alpha-L-guluronate) lyase activity","secondary_identifiers":["MetaCyc:4.2.2.11-RXN"],"synonyms":[{"name":"L-guluronan lyase activity","type":"related"},{"name":"L-guluronate lyase activity","type":"related"},{"name":"alginase II activity","type":"related"},{"name":"guluronate lyase activity","type":"related"},{"name":"poly(alpha-L-1,4-guluronide) exo-lyase activity","type":"related"},{"name":"poly-alpha-L-guluronate lyase activity","type":"related"},{"name":"polyguluronate-specific alginate lyase activity","type":"related"}],"termid":"GO:0047491"}


id: PBO:0013785
data:
  {"annotation_feature_type":"gene","cv_name":"complementation","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"functionally complements E. coli MutY","termid":"PBO:0013785"}


id: GO:0099615
data:
  {"annotated_genes":["SJAG_03804"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[108295],"is_not":false,"summary":null,"term":"GO:0099615"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: (R)-2-hydroxyglutarate + pyruvate = alpha-ketoglutarate + D-lactate, with FAD functioning as an intermediate hydrogen acceptor.","definition_xrefs":["PMID:26774271"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on CH-OH group of donors","termid":"GO:0016614"}],"gene_count":1,"genes_by_uniquename":{"SJAG_03804":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016491","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"(D)-2-hydroxyglutarate-pyruvate transhydrogenase activity","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"D-2HG-pyruvate transhydrogenase activity","type":"exact"},{"name":"R-2-hydroxyglutarate alpha-pyruvate transhydrogenase activity","type":"exact"}],"termid":"GO:0099615","terms_by_termid":{"GO:0099615":null}}


id: PBO:0027601
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_actomyosin_contractile_ring_morphology","termid":"PBO:0027601"}


id: PBO:0065827
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RAB6B, member RAS oncogene family","termid":"PBO:0065827"}


id: GO:0032921
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A complex consisting of 4 protein subunits as a heterotetramer, that possesses sarcosine oxidase activity.","definition_xrefs":["GOC:mah","GOC:mlg"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase complex","termid":"GO:1990204"},{"relation_name":"part_of","term_name":"cytoplasm","termid":"GO:0005737"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0005737"}],"interesting_parent_ids":["GO:0005575","GO:0032991","GO:0005737"],"is_obsolete":false,"name":"sarcosine oxidase complex","termid":"GO:0032921"}


id: PBO:0001015
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA-binding protein, involved in splicing (predicted)","termid":"PBO:0001015"}


id: PBO:0110820
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sulfate transmembrane transporter Vsb1","termid":"PBO:0110820"}


id: PBO:0082154
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Adaptor protein for various signaling pathways; involved in mating response, invasive/filamentous growth, osmotolerance; acts as an adaptor that links G protein-associated Cdc42p-Ste20p complex to the effector Ste11p to modulate signal transduction","termid":"PBO:0082154"}


id: PBO:0028193
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_azetidine-2-carboxylic_acid_acetyltransferase_activity","termid":"PBO:0028193"}


id: PBO:0069826
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 1112, pseudogene","termid":"PBO:0069826"}


id: PBO:0078744
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA methyltransferase 6 non-catalytic subunit","termid":"PBO:0078744"}


id: PBO:0058823
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 8053","termid":"PBO:0058823"}


id: GO:0035865
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a potassium ion stimulus.","definition_xrefs":["GOC:yaf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to potassium ion","termid":"GO:0035864"},{"relation_name":"is_a","term_name":"cellular response to metal ion","termid":"GO:0071248"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cellular response to potassium ion","synonyms":[{"name":"cellular response to K+ ion","type":"exact"},{"name":"cellular response to potassium","type":"exact"}],"termid":"GO:0035865"}


id: GO:0010836
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that decreases the frequency, rate or extent of protein ADP-ribosylation. Protein ADP-ribosylation is the transfer, from NAD, of ADP-ribose to protein amino acids.","definition_xrefs":["GOC:tb","GOC:dph","GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of protein ADP-ribosylation","termid":"GO:0010835"},{"relation_name":"is_a","term_name":"negative regulation of transferase activity","termid":"GO:0051348"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of protein ADP-ribosylation","synonyms":[{"name":"negative regulation of protein amino acid ADP-ribosylation","type":"exact"}],"termid":"GO:0010836"}


id: PBO:0058050
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 4271","termid":"PBO:0058050"}


id: GO:0005547
data:
  {"annotated_genes":["SJAG_02468","SJAG_00216","SJAG_04077"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[83873,98688,114171],"is_not":false,"summary":null,"term":"GO:0005547"}]},"cv_name":"molecular_function","definition":"Binding to phosphatidylinositol-3,4,5-trisphosphate, a derivative of phosphatidylinositol in which the inositol ring is phosphorylated at the 3', 4' and 5' positions.","definition_xrefs":["GOC:jl","GOC:bf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"anion binding","termid":"GO:0043168"},{"relation_name":"is_a","term_name":"phosphatidylinositol phosphate binding","termid":"GO:1901981"}],"gene_count":3,"genes_by_uniquename":{"SJAG_00216":null,"SJAG_02468":null,"SJAG_04077":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0008289"}],"interesting_parent_ids":["GO:0008289","GO:0005488","GO:0003674"],"is_obsolete":false,"name":"phosphatidylinositol-3,4,5-trisphosphate binding","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"PIP3 binding","type":"exact"}],"termid":"GO:0005547","terms_by_termid":{"GO:0005547":null}}


id: GO:1905714
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any mitochondrial calcium release that is involved in regulation of presynaptic cytosolic calcium ion concentration.","definition_xrefs":["GOC:TermGenie","PMID:26644474","GO_REF:0000060"],"gene_count":0,"genotype_count":0,"name":"obsolete mitochondrial calcium release involved in regulation of presynaptic cytosolic calcium ion concentration (obsolete GO:1905714)","synonyms":[{"name":"calcium ion transmembrane export from mitochondrion involved in regulation of presynaptic cytosolic calcium ion concentration","type":"exact"},{"name":"calcium ion transmembrane export from mitochondrion involved in regulation of presynaptic cytosolic calcium levels","type":"exact"},{"name":"mitochondrial calcium release involved in regulation of presynaptic cytosolic calcium levels","type":"exact"}],"termid":"GO:1905714"}


id: PBO:0054936
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2350","termid":"PBO:0054936"}


id: PBO:0051606
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"interleukin 31","termid":"PBO:0051606"}


id: GO:0103087
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: 3-(5'-methylthio)pentylmalate = H+ + 2-oxo-8-methylthiooctanoate + carbon dioxide.","definition_xrefs":["GOC:pz"],"gene_count":0,"genotype_count":0,"name":"obsolete methylthiopentylmalate dehydrogenase activity (obsolete GO:0103087)","termid":"GO:0103087"}


id: PBO:0016567
data:
  {"annotation_feature_type":"gene","cv_name":"complementation","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"functionally complements S. cerevisiae CLN3","termid":"PBO:0016567"}


id: PR:000030008
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A serine/threonine-protein kinase BRSK2 that is encoded in the genome of Schizosaccharomyces pombe.","definition_xrefs":["PRO:DAN"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein","termid":"PR:000000001"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitosis inducer protein kinase cdr2 (Schizosaccharomyces pombe)","pombase_gene_id":"SPAC57A10.02","synonyms":[{"name":"SPAC57A10.02","type":"related"},{"name":"Spom-BRSK2","type":"exact"}],"termid":"PR:000030008"}


id: GO:0060611
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The progression of the mammary gland fat over time, from its formation to the mature structure. The mammary fat is an adipose structure in the gland that is invaded by the mammary ducts.","definition_xrefs":["GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"adipose tissue development","termid":"GO:0060612"},{"relation_name":"part_of","term_name":"mammary gland development","termid":"GO:0030879"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"mammary gland fat development","termid":"GO:0060611"}


id: FYPO:0001560
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of L-threonine measured in a cell is lower than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased cellular amino acid level","termid":"FYPO:0003985"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000002","FYPO:0001320"],"is_obsolete":false,"name":"decreased cellular threonine level","secondary_identifiers":["FYPO:0001614"],"synonyms":[{"name":"decreased cellular L-threonine level","type":"exact"},{"name":"decreased cellular threonine level during mitotic cell cycle","type":"related"},{"name":"decreased cellular threonine level during vegetative growth","type":"exact"},{"name":"decreased level of threonine in cell","type":"exact"},{"name":"decreased threonine accumulation","type":"related"},{"name":"reduced cellular threonine level","type":"exact"},{"name":"reduced level of threonine in cell","type":"exact"}],"termid":"FYPO:0001560"}


id: MOD:01603
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-lysine residue to 2x(15)N labeled L-lysine.","definition_xrefs":["PubMed:18688235","URL:http://www.sigmaaldrich.com/catalog/ProductDetail.do?N4=609021|ALDRICH&N5=SEARCH_CONCAT_PNO|BRAND_KEY&F=SPEC&lang=en_US0.000000E+000"],"direct_ancestors":[{"relation_name":"is_a","term_name":"(15)N labeled residue","termid":"MOD:00843"},{"relation_name":"is_a","term_name":"modified L-lysine residue","termid":"MOD:00912"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"2x(15)N labeled L-lysine","termid":"MOD:01603"}


id: GO:0019177
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: dihydroneopterin triphosphate = dihydroneopterin phosphate + diphosphate.","definition_xrefs":["RHEA:25302"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pyrophosphatase activity","termid":"GO:0016462"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016787"}],"interesting_parent_ids":["GO:0016787","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"dihydroneopterin triphosphate pyrophosphohydrolase activity","secondary_identifiers":["EC:3.6.1.67","MetaCyc:H2NEOPTERINP3PYROPHOSPHOHYDRO-RXN"],"termid":"GO:0019177"}


id: GO:0071031
data:
  {"annotated_genes":["SJAG_03984","SJAG_00961","SJAG_03179","SJAG_04006","SJAG_02622"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[70196,89483,93385,103855,114816],"is_not":false,"summary":null,"term":"GO:0071031"}]},"cv_name":"biological_process","definition":"The set of processes involved in identifying and degrading mRNAs with incorrectly formed 3'-ends within the nucleus.","definition_xrefs":["GOC:dgf","GOC:krc","PMID:18644474"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nuclear mRNA surveillance","termid":"GO:0071028"}],"gene_count":5,"genes_by_uniquename":{"SJAG_00961":null,"SJAG_02622":null,"SJAG_03179":null,"SJAG_03984":null,"SJAG_04006":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044248"},{"rel_name":"regulates","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0016071"},{"rel_name":"negatively_regulates","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0044248","GO:0016071","GO:0010467","GO:0008150"],"is_obsolete":false,"name":"nuclear mRNA surveillance of mRNA 3'-end processing","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"synonyms":[{"name":"nuclear mRNA catabolic process of mRNA with aberrant 3'-ends","type":"exact"},{"name":"nuclear mRNA quality control of mRNAs with aberrant 3'-ends","type":"exact"}],"termid":"GO:0071031","terms_by_termid":{"GO:0071031":null}}


id: GO:0140271
data:
  {"annotated_genes":["SJAG_03608","SJAG_00057"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[107128],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0140425"},{"annotations":[113913],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0098708"}]},"cv_name":"biological_process","definition":"The directed movement of hexose from outside of a cell, across the plasma membrane and into the cytosol.","definition_xrefs":["PMID:10735857"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hexose transmembrane transport","termid":"GO:0008645"},{"relation_name":"is_a","term_name":"carbohydrate import across plasma membrane","termid":"GO:0098704"}],"gene_count":2,"genes_by_uniquename":{"SJAG_00057":null,"SJAG_03608":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0055085"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0051179","GO:0055085","GO:0008150","GO:0006810"],"is_obsolete":false,"name":"hexose import across plasma membrane","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0140271","terms_by_termid":{"GO:0098708":null,"GO:0140425":null}}


id: PBO:0069380
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 640, pseudogene","termid":"PBO:0069380"}


id: PBO:0087078
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Ribosomal 60S subunit protein L39; required for ribosome biogenesis; loss of both Rpl31p and Rpl39p confers lethality; also exhibits genetic interactions with SIS1 and PAB1; homologous to mammalian ribosomal protein L39, no bacterial homolog","termid":"PBO:0087078"}


id: PBO:0049737
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"hemoglobin subunit alpha pseudogene 1","termid":"PBO:0049737"}


id: FYPO:0000299
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"OBSOLETE. A cell population phenotype in which a cell undergoes one or a few rounds of cell division before cells die, resulting in the formation a colony that contains only a few inviable cells. Up to 6 rounds of cell division (generating 64 cells) may be observed, but 3 divisions or fewer is more typical.","definition_xrefs":["PomBase:vw","PomBase:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete inviable microcolony (obsolete FYPO:0000299)","synonyms":[{"name":"inviable microcolony formation","type":"exact"},{"name":"microcolony formation","type":"broad"}],"termid":"FYPO:0000299"}


id: GO:0080117
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Lateral growth of a plant axis (shoot axis or root) that is an increase in thickness resulting from formation of secondary vascular tissues by the vascular cambium.","definition_xrefs":["ISBN:0471245208","PO:0005598","PMID:19074290","PO:0025004"],"direct_ancestors":[{"relation_name":"is_a","term_name":"lateral growth","termid":"GO:0080190"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"secondary growth","synonyms":[{"name":"cambial secondary growth","type":"exact"}],"termid":"GO:0080117"}


id: FYPO:0004254
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular response phenotype observed in the vegetative growth phase of the life cycle in which the regulation of the mitotic cell cycle in response to ultraviolet light (UV) is abnormal. Normally, cell cycle progression is slowed or arrested transiently following exposure to UV. The most common abnormality is for the cell cycle to progress as in the absence of UV exposure.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal regulation of mitotic cell cycle","termid":"FYPO:0000148"},{"relation_name":"is_a","term_name":"abnormal cellular process during vegetative growth","termid":"FYPO:0001362"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0005447","FYPO:0000002","FYPO:0001320","FYPO:0000631"],"is_obsolete":false,"name":"abnormal mitotic cell cycle regulation during cellular response to UV","synonyms":[{"name":"abnormal cell cycle regulation during cellular response to UV","type":"exact"},{"name":"abnormal cell cycle regulation during cellular response to UV during mitotic cell cycle","type":"exact"},{"name":"abnormal mitotic cell cycle delay following UV exposure","type":"exact"},{"name":"abnormal mitotic cell cycle regulation during cellular response to UV during vegetative growth","type":"exact"},{"name":"abnormal mitotic cell cycle regulation during cellular response to ultraviolet light","type":"exact"},{"name":"abnormal mitotic cell cycle regulation in response to UV","type":"exact"}],"termid":"FYPO:0004254"}


id: GO:0005885
data:
  {"annotated_genes":["SJAG_02245","SJAG_02075","SJAG_01964","SJAG_01268","SJAG_03086","SJAG_04100","SJAG_01384"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[74204,75586,76732,77227,77704,78345,78504],"is_not":false,"summary":null,"term":"GO:0005885"}]},"cv_name":"cellular_component","definition":"A stable protein complex that contains two actin-related proteins, Arp2 and Arp3, and five novel proteins (ARPC1-5), and functions in the nucleation of branched actin filaments.","definition_xrefs":["PMID:12479800","GOC:jl","GOC:vw"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein-containing complex","termid":"GO:0032991"},{"relation_name":"part_of","term_name":"actin cytoskeleton","termid":"GO:0015629"}],"gene_count":7,"genes_by_uniquename":{"SJAG_01268":null,"SJAG_01384":null,"SJAG_01964":null,"SJAG_02075":null,"SJAG_02245":null,"SJAG_03086":null,"SJAG_04100":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0015629"}],"interesting_parent_ids":["GO:0005575","GO:0032991","GO:0015629"],"is_obsolete":false,"name":"Arp2/3 protein complex","references_by_uniquename":{"GO_REF:0000033":null},"termid":"GO:0005885","terms_by_termid":{"GO:0005885":null}}


id: GO:0007616
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The memory process that deals with the storage, retrieval and modification of information a long time (typically weeks, months or years) after receiving that information. This type of memory is typically dependent on gene transcription regulated by second messenger activation.","definition_xrefs":["ISBN:0582227089"],"direct_ancestors":[{"relation_name":"is_a","term_name":"memory","termid":"GO:0007613"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"long-term memory","secondary_identifiers":["Wikipedia:Long-term_memory"],"termid":"GO:0007616"}


id: GO:0038201
data:
  {"annotated_genes":["SJAG_01509","SJAG_01703","SJAG_01020","SJAG_00117","SJAG_04460","SJAG_01320","SJAG_02723","SJAG_04987","SJAG_00756","SJAG_00167","SJAG_03067"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[111570,109621,77267,77636,62521,103027,105005],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0031931"},{"annotations":[62522,76050,105006,77637,95570,98006,103028,76536],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0031932"}]},"cv_name":"cellular_component","definition":"A protein complex that contains at least TOR (target of rapamycin) in complex with other signaling components. Mediates the phosphorylation and activation of downstream signaling components including PKB (AKT) or S6K.","definition_xrefs":["Wikipedia:MTORC1","Wikipedia:MTORC2"],"direct_ancestors":[{"relation_name":"is_a","term_name":"intracellular protein-containing complex","termid":"GO:0140535"}],"gene_count":11,"genes_by_uniquename":{"SJAG_00117":null,"SJAG_00167":null,"SJAG_00756":null,"SJAG_01020":null,"SJAG_01320":null,"SJAG_01509":null,"SJAG_01703":null,"SJAG_02723":null,"SJAG_03067":null,"SJAG_04460":null,"SJAG_04987":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0032991","GO:0005575"],"is_obsolete":false,"name":"TOR complex","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000033":null,"GO_REF:0000107":null},"synonyms":[{"name":"TOR signaling complex","type":"exact"},{"name":"mTOR complex","type":"narrow"},{"name":"target of rapamycin complex","type":"exact"}],"termid":"GO:0038201","terms_by_termid":{"GO:0031931":null,"GO:0031932":null}}


id: PBO:0001242
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"UPF0136 family protein","termid":"PBO:0001242"}


id: GO:0008093
data:
  {"annotated_genes":["SJAG_05179","SJAG_01143","SJAG_04558","SJAG_02246","SJAG_00268","SJAG_03116","SJAG_02045","SJAG_02795","SJAG_03200","SJAG_03264","SJAG_00700","SJAG_07018","SJAG_00397","SJAG_03596","SJAG_05196","SJAG_00030","SJAG_04077","SJAG_02737","SJAG_03673","SJAG_00368","SJAG_03564","SJAG_04479","SJAG_04498"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[87306,94186,95482,100985],"is_not":false,"summary":null,"term":"GO:0008093"},{"annotations":[88555,108408,99245,102575,108855,109336,102977,110587,98687,99013,113661,113751],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0106006"},{"annotations":[97221,96054,94438,99330],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0140475"},{"annotations":[99095,109411,78838],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0106166"}]},"cv_name":"molecular_function","definition":"The binding activity of a protein that brings together a cytoskeletal protein (either a microtubule or actin filament, spindle pole body, or protein directly bound to them) and one or more other molecules, permitting them to function in a coordinated way.","definition_xrefs":["GOC:mtg_MIT_16mar07","PMID:30323238"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein-macromolecule adaptor activity","termid":"GO:0030674"}],"gene_count":23,"genes_by_uniquename":{"SJAG_00030":null,"SJAG_00268":null,"SJAG_00368":null,"SJAG_00397":null,"SJAG_00700":null,"SJAG_01143":null,"SJAG_02045":null,"SJAG_02246":null,"SJAG_02737":null,"SJAG_02795":null,"SJAG_03116":null,"SJAG_03200":null,"SJAG_03264":null,"SJAG_03564":null,"SJAG_03596":null,"SJAG_03673":null,"SJAG_04077":null,"SJAG_04479":null,"SJAG_04498":null,"SJAG_04558":null,"SJAG_05179":null,"SJAG_05196":null,"SJAG_07018":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0060090"},{"rel_name":"is_a","termid":"GO:0030674"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0030674","GO:0003674","GO:0060090"],"is_obsolete":false,"name":"cytoskeletal anchor activity","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"synonyms":[{"name":"cytoskeletal adaptor activity","type":"exact"}],"termid":"GO:0008093","terms_by_termid":{"GO:0008093":null,"GO:0106006":null,"GO:0106166":null,"GO:0140475":null}}


id: PBO:0043511
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CNTNAP3 pseudogene 6","termid":"PBO:0043511"}


id: PBO:0053110
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"LCMT1 antisense RNA 1","termid":"PBO:0053110"}


id: PBO:0070164
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U7 small nuclear 78 pseudogene","termid":"PBO:0070164"}


id: FYPO:0001122
data:
  {"alleles_by_uniquename":{"SJAG_00266:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_00266","name":"atf1delta","uniquename":"SJAG_00266:allele-1"},"SJAG_02592:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_02592","name":"sty1delta","uniquename":"SJAG_02592:allele-1"},"SJAG_04312:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_04312","name":"pka1delta","uniquename":"SJAG_04312:allele-1"},"SJAG_04332:allele-1":{"allele_type":"amino_acid_mutation","description":"I30T,T572P","gene_uniquename":"SJAG_04332","name":"cdc25-D9","uniquename":"SJAG_04332:allele-1"}},"annotation_feature_type":"genotype","cv_annotations":{"single_locus_phenotype":[{"annotations":[115993,116005,116252],"is_not":false,"summary":null,"term":"FYPO:0001122"},{"annotations":[115825],"is_not":false,"rel_names":["is_a","has_part"],"summary":null,"term":"FYPO:0007701"}]},"cv_name":"fission_yeast_phenotype","definition":"A cell phenotype in which a cell is longer, and has a greater length:diameter ratio, than normal in the vegetative growth phase of the life cycle.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"has_part","term_name":"increased vegetative cell length","termid":"FYPO:0006634"},{"relation_name":"is_a","term_name":"elongated cell","termid":"FYPO:0000017"},{"relation_name":"is_a","term_name":"increased vegetative cell length","termid":"FYPO:0006634"}],"gene_count":4,"genes_by_uniquename":{"SJAG_00266":null,"SJAG_02592":null,"SJAG_04312":null,"SJAG_04332":null},"genotype_count":4,"genotypes_by_uniquename":{"atf1delta":{"display_name":"atf1delta","display_uniquename":"atf1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_00266:allele-1","expression":"Null"}]}]},"cdc25-D9-I30T,T572P-amino_acid_mutation-expression-not_assayed_or_wild_type":{"display_name":"cdc25-D9(I30T,T572P aa)","display_uniquename":"cdc25-D9-I30T,T572P-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04332:allele-1","expression":"Not assayed or wild type"}]}]},"pka1delta":{"display_name":"pka1delta","display_uniquename":"pka1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04312:allele-1","expression":"Null"}]}]},"sty1delta":{"display_name":"sty1delta","display_uniquename":"sty1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_02592:allele-1","expression":"Null"}]}]}},"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"has_part","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000005"},{"rel_name":"has_part","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"has_part","termid":"FYPO:0000005"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0000005","FYPO:0001320","FYPO:0001985"],"is_obsolete":false,"name":"elongated vegetative cell","references_by_uniquename":{"PMID:25866389":null,"PMID:27678009":null,"PMID:31150379":null},"single_locus_annotated_genes":["SJAG_04312","SJAG_02592","SJAG_04332","SJAG_00266"],"single_locus_genotype_uniquenames":["atf1delta","pka1delta","sty1delta","cdc25-D9-I30T,T572P-amino_acid_mutation-expression-not_assayed_or_wild_type"],"synonyms":[{"name":"long vegetative cell","type":"exact"}],"termid":"FYPO:0001122","terms_by_termid":{"FYECO:0000004":null,"FYECO:0000005":null,"FYECO:0000102":null,"FYECO:0000137":null,"FYPO:0001122":null,"FYPO:0007701":null,"FYPO_EXT:0000001":null,"FYPO_EXT:0000003":null}}


id: GO:0080129
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The aggregation, arrangement and bonding together of a mature, active 20S proteasome core particle complex that does not contain any regulatory particles.","definition_xrefs":["PMID:12401807","PMID:17971041"],"direct_ancestors":[{"relation_name":"is_a","term_name":"proteasome assembly","termid":"GO:0043248"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0065003"},{"rel_name":"part_of","termid":"GO:0044085"}],"interesting_parent_ids":["GO:0065003","GO:0044085","GO:0008150"],"is_obsolete":false,"name":"proteasome core complex assembly","synonyms":[{"name":"20S proteasome assembly","type":"exact"}],"termid":"GO:0080129"}


id: PBO:0005558
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"AMP-binding dehydrogenase (predicted)","termid":"PBO:0005558"}


id: PBO:0038387
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-has_active_ingredient","termid":"PBO:0038387"}


id: GO:0051568
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The modification of histone H3 by addition of one or more methyl groups to lysine at position 4 of the histone.","definition_xrefs":["GOC:ai","GOC:pr"],"gene_count":0,"genotype_count":0,"name":"obsolete histone H3-K4 methylation (obsolete GO:0051568)","synonyms":[{"name":"histone H3 K4 methylation","type":"exact"},{"name":"histone H3K4me","type":"exact"},{"name":"histone lysine H3 K4 methylation","type":"exact"}],"termid":"GO:0051568"}


id: FYPO:0002181
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"OBSOLETE. A mixed population phenotype in which all cells in a population are inviable, and the population includes a mixture of germinated spores and spheroid vegetative cells. The spheroid cells arise from division of some of the germinated spores, and may form a microcolony of up to 64 cells.","definition_xrefs":["PomBase:vw","PomBase:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete inviable mixed population including germinated spores and spheroid cells (obsolete FYPO:0002181)","synonyms":[{"name":"inviable mixed population including germinated spores and rounded cells","type":"exact"}],"termid":"FYPO:0002181"}


id: GO:1990347
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the removal of adenine misinserted into nascent strand opposite 8-oxoG in the template by adenine DNA glycosylase activity. The reaction leaves an apyrimidinic (AP) site.","definition_xrefs":["PMID:24559510"],"gene_count":0,"genotype_count":0,"name":"obsolete G*/A mismatch-specific adenine-DNA glycosylase activity (obsolete GO:1990347)","synonyms":[{"name":"G*/A mismatch-specific adenine-DNA glycosylase activity","type":"exact"}],"termid":"GO:1990347"}


id: PBO:0067701
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 5.8S ribosomal pseudogene 9","termid":"PBO:0067701"}


id: SO:0001358
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"5_carboxyhydroxymethyl_uridine is a modified uridine base feature.","direct_ancestors":[{"relation_name":"is_a","term_name":"modified_uridine","termid":"SO:0001277"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"five_carboxyhydroxymethyl_uridine","secondary_identifiers":["RNAMOD:066"],"synonyms":[{"name":"5-(carboxyhydroxymethyl)uridine","type":"exact"},{"name":"chm5U","type":"exact"},{"name":"five carboxyhydroxymethyl uridine","type":"exact"}],"termid":"SO:0001358"}


id: PBO:0062423
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 7 subfamily E member 84 pseudogene","termid":"PBO:0062423"}


id: PBO:0048172
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"G3BP1 pseudogene 1","termid":"PBO:0048172"}


id: GO:1903693
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that modulates the frequency, rate or extent of mitotic G1 cell cycle arrest in response to nitrogen starvation.","definition_xrefs":["PMID:15713656","GOC:TermGenie","GO_REF:0000058"],"gene_count":0,"genotype_count":0,"name":"obsolete regulation of mitotic G1 cell cycle arrest in response to nitrogen starvation (obsolete GO:1903693)","synonyms":[{"name":"regulation of G1 mitotic cell cycle arrest in response to nitrogen starvation","type":"exact"}],"termid":"GO:1903693"}


id: GO:0047931
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: ATP + D-glucosamine = ADP + D-glucosamine phosphate.","definition_xrefs":["EC:2.7.1.8","MetaCyc:GLUCOSAMINE-KINASE-RXN"],"direct_ancestors":[{"relation_name":"is_a","term_name":"kinase activity","termid":"GO:0016301"},{"relation_name":"is_a","term_name":"phosphotransferase activity, alcohol group as acceptor","termid":"GO:0016773"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016301"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016301","GO:0016740"],"is_obsolete":false,"name":"glucosamine kinase activity","secondary_identifiers":["RHEA:10948"],"synonyms":[{"name":"ATP:2-amino-2-deoxy-D-glucose-6-phosphotransferase activity","type":"related"},{"name":"ATP:D-glucosamine phosphotransferase activity","type":"related"},{"name":"aminodeoxyglucose kinase activity","type":"related"},{"name":"glucosamine kinase (phosphorylating)","type":"related"}],"termid":"GO:0047931"}


id: PBO:0081942
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ZNF706 neighboring transcript 1","termid":"PBO:0081942"}


id: GO:2000858
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of aldosterone secretion.","definition_xrefs":["GOC:sl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of mineralocorticoid secretion","termid":"GO:2000855"},{"relation_name":"regulates","term_name":"aldosterone secretion","termid":"GO:0035932"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0023052","GO:0006810","GO:0008150"],"is_obsolete":false,"name":"regulation of aldosterone secretion","termid":"GO:2000858"}


id: GO:0036224
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A special chromosome region located towards one end of a chromosome that contains dispersed copies of short, repetitive DNA sequences and functions as a cis-acting element essential for presynaptic homologous chromosome pairing and chromosome-nuclear envelope attachment.","definition_xrefs":["PMID:18597662","GOC:kmv"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular anatomical entity","termid":"GO:0110165"},{"relation_name":"part_of","term_name":"condensed nuclear chromosome","termid":"GO:0000794"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005694"},{"rel_name":"part_of","termid":"GO:0005634"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005694","GO:0005575","GO:0005634"],"is_obsolete":false,"name":"pairing center","synonyms":[{"name":"homolog recognition region","type":"exact"}],"termid":"GO:0036224"}


id: PBO:0024803
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-has_causal_agent","termid":"PBO:0024803"}


id: PBO:0049736
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"hemoglobin subunit alpha 2","termid":"PBO:0049736"}


id: PBO:0061498
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"non-coding repressor of NFAT","termid":"PBO:0061498"}


id: RO:0002121
data:
  {"annotation_feature_type":"gene","cv_name":"relationship","definition":"Relation between a neuron and some structure  (e.g.- a brain region) in which its dendrite receives synaptic input.\\n\\n\t","direct_ancestors":[{"relation_name":"is_a","term_name":"has_postsynaptic_terminal_in","termid":"RO:0002110"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dendrite_synapsed_in","termid":"RO:0002121"}


id: GO:0009580
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"OBSOLETE. (Was not defined before being made obsolete).","definition_xrefs":["GOC:go_curators"],"gene_count":0,"genotype_count":0,"name":"obsolete thylakoid (sensu Bacteria) (obsolete GO:0009580)","synonyms":[{"name":"thylakoid (sensu Bacteria)","type":"exact"}],"termid":"GO:0009580"}


id: PBO:0066243
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA binding motif single stranded interacting protein 1","termid":"PBO:0066243"}


id: GO:0089706
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The directed movement of L-ornithine out of the vacuole, across the vacuolar membrane.","definition_xrefs":["PMID:21307582"],"direct_ancestors":[{"relation_name":"is_a","term_name":"amino acid transmembrane export from vacuole","termid":"GO:0032974"},{"relation_name":"is_a","term_name":"L-ornithine transmembrane transport","termid":"GO:1903352"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0055085"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0055085","GO:0051179","GO:0008150","GO:0006810"],"is_obsolete":false,"name":"L-ornithine transmembrane export from vacuole","termid":"GO:0089706"}


id: PBO:0001916
data:
  {"annotation_feature_type":"gene","cv_name":"EC numbers","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"6.1.1.20","termid":"PBO:0001916"}


id: PBO:0067606
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 774, pseudogene","termid":"PBO:0067606"}


id: PBO:0053922
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1219","termid":"PBO:0053922"}


id: PBO:0089810
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DNAJ domain protein Caj1/Djp1 type","termid":"PBO:0089810"}


id: PBO:0044755
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DEAD-box helicase 39B pseudogene 1","termid":"PBO:0044755"}


id: GO:0002503
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The binding of a peptide to the antigen binding groove of an MHC class II protein complex.","definition_xrefs":["GOC:add","ISBN:0781735149","PMID:15771591"],"direct_ancestors":[{"relation_name":"is_a","term_name":"peptide antigen assembly with MHC protein complex","termid":"GO:0002501"},{"relation_name":"part_of","term_name":"MHC class II protein complex assembly","termid":"GO:0002399"},{"relation_name":"part_of","term_name":"antigen processing and presentation of peptide antigen via MHC class II","termid":"GO:0002495"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0065003"},{"rel_name":"part_of","termid":"GO:0044085"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0065003"}],"interesting_parent_ids":["GO:0008150","GO:0044085","GO:0065003"],"is_obsolete":false,"name":"peptide antigen assembly with MHC class II protein complex","termid":"GO:0002503"}


id: PBO:0087261
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Serine/threonine protein kinase of the the RAM signaling network; Ndr/LATS family member; binds regulatory subunit Mob2p; involved in regulation of cellular morphogenesis, polarized growth, and septum destruction; phosphorylation by Cbk1p regulates localization and activity of Ace2p transcription factor and Ssd1p translational repressor; Cbk1p activity is regulated by both phosphorylation and specific localization; relocalizes to cytoplasm upon DNA replication stress","termid":"PBO:0087261"}


id: PBO:0056027
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"LSP1 pseudogene 5","termid":"PBO:0056027"}


id: PBO:0050043
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"major histocompatibility complex, class I, F","termid":"PBO:0050043"}


id: PR:O74732
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A 3-keto-steroid reductase that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO02720","PANTHER:PTHR24316:SF97","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"3-keto-steroid reductase (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC1709.07","secondary_identifiers":["UniProtKB:O74732"],"synonyms":[{"name":"Spom972h-HSD17B7","type":"exact"}],"termid":"PR:O74732"}


id: MOD:00660
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-cysteine residue to a methylated cysteine, either S-methylcysteine, or cysteine methyl ester.","definition_xrefs":["PubMed:18688235"],"direct_ancestors":[{"relation_name":"is_a","term_name":"methylated residue","termid":"MOD:00427"},{"relation_name":"is_a","term_name":"modified L-cysteine residue","termid":"MOD:00905"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:00427"}],"interesting_parent_ids":["MOD:00427"],"is_obsolete":false,"name":"methylated cysteine","synonyms":[{"name":"MeCys","type":"exact"}],"termid":"MOD:00660"}


id: GO:0120192
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A cellular process that results in the aggregation, arrangement and bonding together of a set of components to form a tight junction. A tight junction seals cells together in an epithelium in a way that prevents even small molecules from leaking from one side of the sheet to the other.","definition_xrefs":["GOC:rl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell-cell junction assembly","termid":"GO:0007043"},{"relation_name":"is_a","term_name":"tight junction organization","termid":"GO:0120193"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0044085"}],"interesting_parent_ids":["GO:0044085","GO:0008150"],"is_obsolete":false,"name":"tight junction assembly","synonyms":[{"name":"occluding cell junction assembly","type":"exact"},{"name":"occluding junction assembly","type":"exact"}],"termid":"GO:0120192"}


id: GO:0120011
data:
  {"annotated_genes":["SJAG_01329"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[102704],"is_not":false,"summary":null,"term":"GO:0120011"}]},"cv_name":"biological_process","definition":"The transport of sterols between membranes in which a sterol molecule is transported through an aqueous phase from the outer leaflet of a donor membrane to the outer leaflet of an acceptor membrane. This process does not require metabolic energy and can be either spontaneous or mediated by lipid transfer proteins (LTPs).","definition_xrefs":["PMID:24220498","PMID:20823909","GOC:krc","PMID:25797198"],"direct_ancestors":[{"relation_name":"is_a","term_name":"sterol transport","termid":"GO:0015918"},{"relation_name":"is_a","term_name":"intermembrane lipid transfer","termid":"GO:0120009"}],"gene_count":1,"genes_by_uniquename":{"SJAG_01329":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0061024"},{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006810","GO:0051179","GO:0061024","GO:0008150"],"is_obsolete":false,"name":"intermembrane sterol transfer","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0120011","terms_by_termid":{"GO:0120011":null}}


id: GO:0051359
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The formation of the fluorescent protein FP611 chromophore cross-link from the alpha-carboxyl carbon of residue n, a methionine, to the alpha-amino nitrogen of residue n+2, a glycine, and a dehydration to form a double bond to the alpha-amino nitrogen of residue n+1. This cross-linking is coupled with a dehydrogenation of residue n+1 to form a double bond between the alpha and beta carbons. This modification is found in the GFP-like fluorescent chromoprotein from the sea anemone Entacmaea quadricolor.","definition_xrefs":["PDB:1UIS","PMID:15542608","PDB:1XQM","PMID:10852900","PMID:12909624","PMID:12185250","RESID:AA0379"],"gene_count":0,"genotype_count":0,"name":"obsolete peptide cross-linking via 2-imino-methionine 5-imidazolinone glycine (obsolete GO:0051359)","synonyms":[{"name":"biosynthesis of protein-protein cross-link via 2-imino-methionine 5-imidazolinone glycine","type":"exact"},{"name":"biosynthetic process of protein-protein cross-link via 2-imino-methionine 5-imidazolinone glycine","type":"exact"}],"termid":"GO:0051359"}


id: PBO:0091241
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"non-coding RNA, possible alternative UTR","termid":"PBO:0091241"}


id: GO:0015184
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Enables the transfer of L-cystine from one side of a membrane to the other.","definition_xrefs":["ISBN:0815340729","ISBN:0198506732","GOC:go_curators","GOC:mtg_transport"],"direct_ancestors":[{"relation_name":"is_a","term_name":"sulfur amino acid transmembrane transporter activity","termid":"GO:0000099"},{"relation_name":"is_a","term_name":"L-amino acid transmembrane transporter activity","termid":"GO:0015179"},{"relation_name":"is_a","term_name":"modified amino acid transmembrane transporter activity","termid":"GO:0072349"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0005215"}],"interesting_parent_ids":["GO:0022857","GO:0005215","GO:0003674"],"is_obsolete":false,"name":"L-cystine transmembrane transporter activity","secondary_identifiers":["Reactome:R-HSA-5340130"],"synonyms":[{"name":"L-cystine transporter activity","type":"broad"},{"name":"cystine/diaminopimelate porter activity","type":"narrow"}],"termid":"GO:0015184"}


id: GO:2000304
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of ceramide biosynthetic process.","definition_xrefs":["GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of amide metabolic process","termid":"GO:0034250"},{"relation_name":"is_a","term_name":"positive regulation of sphingolipid biosynthetic process","termid":"GO:0090154"},{"relation_name":"is_a","term_name":"regulation of ceramide biosynthetic process","termid":"GO:2000303"},{"relation_name":"positively_regulates","term_name":"ceramide biosynthetic process","termid":"GO:0046513"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0006629"},{"rel_name":"regulates","termid":"GO:0044085"},{"rel_name":"positively_regulates","termid":"GO:0006629"}],"interesting_parent_ids":["GO:0044085","GO:0006629","GO:0008150"],"is_obsolete":false,"name":"positive regulation of ceramide biosynthetic process","synonyms":[{"name":"positive regulation of ceramide anabolism","type":"exact"},{"name":"positive regulation of ceramide biosynthesis","type":"exact"},{"name":"positive regulation of ceramide formation","type":"exact"},{"name":"positive regulation of ceramide synthesis","type":"exact"}],"termid":"GO:2000304"}


id: GO:2000914
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of galactoglucomannan catabolic process.","definition_xrefs":["GOC:mengo_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of catabolic process","termid":"GO:0009896"},{"relation_name":"is_a","term_name":"positive regulation of macromolecule metabolic process","termid":"GO:0010604"},{"relation_name":"is_a","term_name":"positive regulation of carbohydrate metabolic process","termid":"GO:0045913"},{"relation_name":"is_a","term_name":"regulation of galactoglucomannan catabolic process","termid":"GO:2000912"},{"relation_name":"positively_regulates","term_name":"galactoglucomannan catabolic process","termid":"GO:2000885"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0005975"},{"rel_name":"positively_regulates","termid":"GO:0005975"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0005975"],"is_obsolete":false,"name":"positive regulation of galactoglucomannan catabolic process","synonyms":[{"name":"positive regulation of galactoglucomannan catabolism","type":"exact"}],"termid":"GO:2000914"}


id: PBO:0084025
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Glyoxylate reductase; null mutation results in increased biomass after diauxic shift; the authentic, non-tagged protein is detected in highly purified mitochondria in high-throughput studies; protein abundance increases in response to DNA replication stress","termid":"PBO:0084025"}


id: GO:0102670
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 2,4',7-trihydroxyisoflavanone + S-adenosyl-L-methionine = H+ + 2,7-dihydroxy-4'-methoxyisoflavanone + S-adenosyl-L-homocysteine.","definition_xrefs":["GOC:pz","EC:2.1.1.212"],"direct_ancestors":[{"relation_name":"is_a","term_name":"methyltransferase activity","termid":"GO:0008168"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016741"},{"rel_name":"is_a","termid":"GO:0016740"}],"interesting_parent_ids":["GO:0016740","GO:0003824","GO:0003674","GO:0016741"],"is_obsolete":false,"name":"2,7,4'-trihydroxyisoflavanone-4'-O-methyltransferase activity","secondary_identifiers":["MetaCyc:RXN-3624","RHEA:31371"],"termid":"GO:0102670"}


id: PR:O94465
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- cms1 gene.","definition_xrefs":["UniProtKB:O94465","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protein cms1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC23G7.07c","synonyms":[{"name":"Spom972h-cms1","type":"exact"}],"termid":"PR:O94465"}


id: PBO:0060313
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"myosin light chain kinase 2","termid":"PBO:0060313"}


id: PBO:0071283
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L26 pseudogene 6","termid":"PBO:0071283"}


id: PBO:0041355
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"complement component 4B (Chido blood group), copy 2","termid":"PBO:0041355"}


id: PBO:0028877
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_cell_population_growth_on_maltose_carbon_source","termid":"PBO:0028877"}


id: PBO:0067655
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 832, pseudogene","termid":"PBO:0067655"}


id: GO:0004261
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the hydrolysis of peptide bonds. Specificity similar to chymotrypsin C.","definition_xrefs":["GOC:curators"],"gene_count":0,"genotype_count":0,"name":"obsolete cathepsin G activity (obsolete GO:0004261)","synonyms":[{"name":"cathepsin G activity","type":"exact"},{"name":"chymotrypsin-like proteinase activity","type":"related"},{"name":"neutral proteinase activity","type":"related"}],"termid":"GO:0004261"}


id: FYPO:0007289
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which the observed rate of UDP-glucose 4-epimerase activity is abnormal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal catalytic activity","termid":"FYPO:0000661"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000707"},{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0000654"},{"rel_name":"is_a","termid":"FYPO:0000661"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000707","FYPO:0000654","FYPO:0000652","FYPO:0000661"],"is_obsolete":false,"name":"abnormal UDP-glucose 4-epimerase activity","termid":"FYPO:0007289"}


id: PBO:0073283
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"septin 14 pseudogene 4","termid":"PBO:0073283"}


id: PBO:0063581
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pescadillo ribosomal biogenesis factor 1 pseudogene 1","termid":"PBO:0063581"}


id: GO:0048792
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The release of a neurotransmitter into the synaptic cleft, where the release step is independent of the presence of calcium ions (Ca2+). The neurotransmitter is contained within a membrane-bounded vesicle, and is released by fusion of the vesicle with the presynaptic plasma membrane of a nerve cell.","definition_xrefs":["GOC:curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"neurotransmitter secretion","termid":"GO:0007269"},{"relation_name":"is_a","term_name":"synaptic vesicle exocytosis","termid":"GO:0016079"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"part_of","termid":"GO:0006810"},{"rel_name":"part_of","termid":"GO:0016192"},{"rel_name":"is_a","termid":"GO:0016192"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0016192","GO:0051179","GO:0023052","GO:0006810","GO:0008150"],"is_obsolete":false,"name":"spontaneous exocytosis of neurotransmitter","synonyms":[{"name":"spontaneous synaptic vesicle exocytosis","type":"exact"}],"termid":"GO:0048792"}


id: GO:0006242
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of dCTP, deoxycytidine triphosphate.","definition_xrefs":["ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pyrimidine deoxyribonucleoside triphosphate biosynthetic process","termid":"GO:0009212"},{"relation_name":"is_a","term_name":"pyrimidine deoxyribonucleotide biosynthetic process","termid":"GO:0009221"},{"relation_name":"is_a","term_name":"dCTP metabolic process","termid":"GO:0046065"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0055086"}],"interesting_parent_ids":["GO:0055086","GO:0008150","GO:0044281"],"is_obsolete":false,"name":"dCTP biosynthetic process","synonyms":[{"name":"dCTP anabolism","type":"exact"},{"name":"dCTP biosynthesis","type":"exact"},{"name":"dCTP formation","type":"exact"},{"name":"dCTP synthesis","type":"exact"}],"termid":"GO:0006242"}


id: GO:0098843
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A stably positioned site of clathrin adjacent and physically attached to the postsynaptic specialization, which is the site of endocytosis of post-synaptic proteins.","definition_xrefs":["PMID:17880892"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular anatomical entity","termid":"GO:0110165"},{"relation_name":"part_of","term_name":"postsynapse","termid":"GO:0098794"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"postsynaptic endocytic zone","termid":"GO:0098843"}


id: FYPO:0003153
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of protein measured in a cell during a cellular response to heat is normal (i.e. indistinguishable from wild type). Total protein or a specific protein may be affected.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal protein level during vegetative growth","termid":"FYPO:0000833"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001312"},{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0001312","FYPO:0000257","FYPO:0001320","FYPO:0000002"],"is_obsolete":false,"name":"normal protein level during cellular response to heat","synonyms":[{"name":"normal protein accumulation during cellular response to heat","type":"related"},{"name":"normal protein level during cellular response to heat during mitotic cell cycle","type":"related"},{"name":"normal protein level during cellular response to heat during vegetative growth","type":"exact"}],"termid":"FYPO:0003153"}


id: GO:1904119
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of otic vesicle morphogenesis.","definition_xrefs":["GO_REF:0000058","PMID:25677106","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of animal organ morphogenesis","termid":"GO:0110111"},{"relation_name":"is_a","term_name":"regulation of otic vesicle morphogenesis","termid":"GO:1904118"},{"relation_name":"is_a","term_name":"negative regulation of morphogenesis of an epithelium","termid":"GO:1905331"},{"relation_name":"negatively_regulates","term_name":"otic vesicle morphogenesis","termid":"GO:0071600"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of otic vesicle morphogenesis","synonyms":[{"name":"down regulation of otic vesicle morphogenesis","type":"exact"},{"name":"down-regulation of otic vesicle morphogenesis","type":"exact"},{"name":"downregulation of otic vesicle morphogenesis","type":"exact"},{"name":"inhibition of otic vesicle morphogenesis","type":"narrow"}],"termid":"GO:1904119"}


id: PR:O74977
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- vms1 gene.","definition_xrefs":["UniProtKB:O74977","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"VMS1 homolog C1827.04 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC1827.04","synonyms":[{"name":"Spom972h-vms1","type":"exact"}],"termid":"PR:O74977"}


id: GO:0046855
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The process of removing a phosphate group from any mono- or polyphosphorylated inositol.","definition_xrefs":["ISBN:0198506732"],"gene_count":0,"genotype_count":0,"name":"obsolete inositol phosphate dephosphorylation (obsolete GO:0046855)","synonyms":[{"name":"myo-inositol phosphate dephosphorylation","type":"narrow"}],"termid":"GO:0046855"}


id: PBO:0044579
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DBI pseudogene 1","termid":"PBO:0044579"}


id: PBO:0108890
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RPL7L1 pseudogene 3","termid":"PBO:0108890"}


id: PBO:0051007
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"immunoglobulin (CD79A) binding protein 1 pseudogene 5","termid":"PBO:0051007"}


id: GO:0021560
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of the abducens nerve over time, from its formation to the mature structure. The motor function of the abducens nerve is to contract the lateral rectus which results in abduction of the eye.","definition_xrefs":["ISBN:0838580343","GOC:dph","GOC:jid","GOC:cls","GOC:dgh","GO_REF:0000021"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cranial nerve development","termid":"GO:0021545"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"abducens nerve development","synonyms":[{"name":"CN VI development","type":"related"},{"name":"cranial nerve 6 development","type":"exact"},{"name":"cranial nerve VI development","type":"exact"}],"termid":"GO:0021560"}


id: FYPO:0004548
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which the observed rate of a protein kinase activity is normal (i.e. indistinguishable from wild type) during a cellular response to hydroxyurea.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal protein kinase activity","termid":"FYPO:0003075"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000654"},{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0000257"}],"interesting_parent_ids":["FYPO:0000652","FYPO:0000257","FYPO:0000654"],"is_obsolete":false,"name":"normal protein kinase activity during cellular response to hydroxyurea","synonyms":[{"name":"normal protein kinase activity during cellular response to HU","type":"exact"},{"name":"normal protein kinase activity in response to hydroxyurea","type":"related"}],"termid":"FYPO:0004548"}


id: GO:2000374
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of oxygen metabolic process.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of cellular metabolic process","termid":"GO:0031323"},{"relation_name":"regulates","term_name":"oxygen metabolic process","termid":"GO:0072592"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of oxygen metabolic process","synonyms":[{"name":"regulation of diatomic oxygen metabolic process","type":"exact"},{"name":"regulation of oxygen metabolism","type":"exact"}],"termid":"GO:2000374"}


id: PBO:0081737
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein 668","termid":"PBO:0081737"}


id: GO:0061988
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chromosome organization process in which meiotic chromosomes in the germ cell nucleus cluster together to form a compact spherical structure called the karyosome.","definition_xrefs":["PMID:19696886"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular process involved in reproduction in multicellular organism","termid":"GO:0022412"},{"relation_name":"is_a","term_name":"meiosis I cell cycle process","termid":"GO:0061982"},{"relation_name":"is_a","term_name":"chromosome organization involved in meiotic cell cycle","termid":"GO:0070192"},{"relation_name":"part_of","term_name":"gamete generation","termid":"GO:0007276"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0007049"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0007049","GO:0008150"],"is_obsolete":false,"name":"karyosome formation","termid":"GO:0061988"}


id: FYPO:0005883
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A vegetative cell population growth phenotype in which a cell population does not grow under anaerobic conditions.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abolished vegetative cell population growth","termid":"FYPO:0001575"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000003"},{"rel_name":"is_a","termid":"FYPO:0002057"},{"rel_name":"is_a","termid":"FYPO:0002060"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000139"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0002058"}],"interesting_parent_ids":["FYPO:0002058","FYPO:0000003","FYPO:0005447","FYPO:0000139","FYPO:0001985","FYPO:0002060","FYPO:0002057"],"is_obsolete":false,"name":"abolished anaerobic cell population growth","synonyms":[{"name":"abolished anaerobic vegetative cell population growth","type":"exact"},{"name":"anaerobic cell population growth abolished","type":"exact"}],"termid":"FYPO:0005883"}


id: GO:1901047
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The series of molecular signals generated as a consequence of the insulin receptor binding to insulin that controls viability and duration in the adult phase of the life-cycle.","definition_xrefs":["GOC:kmv","GOC:TermGenie","PMID:9360933"],"gene_count":0,"genotype_count":0,"name":"obsolete insulin receptor signaling pathway involved in determination of adult lifespan (obsolete GO:1901047)","synonyms":[{"name":"daf-2 receptor signaling pathway of determination of adult lifespan","type":"narrow"},{"name":"insulin receptor signaling pathway of determination of adult lifespan","type":"exact"},{"name":"insulin receptor signalling pathway of determination of adult lifespan","type":"exact"}],"termid":"GO:1901047"}


id: GO:0010822
data:
  {"annotated_genes":["SJAG_04502","SJAG_01212"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[69064],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1903599"},{"annotations":[105320],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0090141"}]},"cv_name":"biological_process","definition":"Any process that increases the frequency, rate or extent of a process involved in the formation, arrangement of constituent parts, or disassembly of a mitochondrion.","definition_xrefs":["GOC:dph","GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of organelle organization","termid":"GO:0010638"},{"relation_name":"is_a","term_name":"regulation of mitochondrion organization","termid":"GO:0010821"},{"relation_name":"positively_regulates","term_name":"mitochondrion organization","termid":"GO:0007005"}],"gene_count":2,"genes_by_uniquename":{"SJAG_01212":null,"SJAG_04502":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0007005"},{"rel_name":"positively_regulates","termid":"GO:0007005"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0007005","GO:0008150"],"is_obsolete":false,"name":"positive regulation of mitochondrion organization","references_by_uniquename":{"GO_REF:0000104":null,"GO_REF:0000107":null},"synonyms":[{"name":"positive regulation of mitochondrion organisation","type":"exact"}],"termid":"GO:0010822","terms_by_termid":{"GO:0090141":null,"GO:1903599":null}}


id: PBO:0064113
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"polycystin 1 like 3, transient receptor potential channel interacting","termid":"PBO:0064113"}


id: GO:0103099
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: UDP-alpha-D-glucose + 5-methylthiopentylhydroximate = H+ + 4-methylthiobutyldesulfoglucosinolate + UDP.","definition_xrefs":["EC:2.4.1.195","GOC:pz"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hexosyltransferase activity","termid":"GO:0016758"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016757"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016740","GO:0016757"],"is_obsolete":false,"name":"UDP-glucose:5-methylthiopentylhydroximate S-glucosyltransferase activity","secondary_identifiers":["MetaCyc:RXNQT-4324"],"termid":"GO:0103099"}


id: GO:1902775
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The aggregation, arrangement and bonding together of a set of components to form a mitochondrial large ribosomal subunit.","definition_xrefs":["GO_REF:0000079","GOC:TermGenie","PMID:24206665"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ribosomal large subunit assembly","termid":"GO:0000027"},{"relation_name":"part_of","term_name":"mitochondrial ribosome assembly","termid":"GO:0061668"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0065003"},{"rel_name":"part_of","termid":"GO:0044085"},{"rel_name":"part_of","termid":"GO:0042254"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0044085","GO:0065003","GO:0008150","GO:0042254"],"is_obsolete":false,"name":"mitochondrial large ribosomal subunit assembly","synonyms":[{"name":"39S ribosomal subunit, mitochondrial assembly","type":"narrow"},{"name":"39S ribosomal subunit, mitochondrial formation","type":"narrow"},{"name":"mitochondrial large ribosomal subunit formation","type":"exact"}],"termid":"GO:1902775"}


id: GO:2000609
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of thyroid hormone generation.","definition_xrefs":["GOC:obol"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of cellular metabolic process","termid":"GO:0031323"},{"relation_name":"is_a","term_name":"regulation of hormone metabolic process","termid":"GO:0032350"},{"relation_name":"is_a","term_name":"regulation of nitrogen compound metabolic process","termid":"GO:0051171"},{"relation_name":"regulates","term_name":"thyroid hormone generation","termid":"GO:0006590"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of thyroid hormone generation","termid":"GO:2000609"}


id: GO:0140195
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that activates or increases the frequency, rate or extent of an adenylate cyclase-inhibiting adrenergic receptor signaling pathway involved in some heart process.","definition_xrefs":["GOC:rph","GOC:BHF","GOC:BHF_miRNA"],"gene_count":0,"genotype_count":0,"name":"obsolete positive regulation of adenylate cyclase-inhibiting adrenergic receptor signaling pathway involved in heart process (obsolete GO:0140195)","termid":"GO:0140195"}


id: GO:0003348
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which a relatively unspecialized cell acquires the specialized structural and/or functional features of a cardiac endothelial cell.","definition_xrefs":["GOC:dph","PMID:18722343"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cardiocyte differentiation","termid":"GO:0035051"},{"relation_name":"is_a","term_name":"endothelial cell differentiation","termid":"GO:0045446"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cardiac endothelial cell differentiation","termid":"GO:0003348"}


id: FYPO:0004322
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which chromatin containing the histone H3 variant CenH3 (also called CENP-A; Cnp1 in S. pombe) are assembled over a smaller portion of the centromeric region of the chromosome than normal. CENP-A-containing nucleosomes are normally assembled into chromatin at the centromeres, encompassing the central core and centromeric inner repeat regions.","definition_xrefs":["GO:0034080","PomBase:mah","PomBase:vw","PMID:18493607"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal CENP-A containing chromatin assembly","termid":"FYPO:0003409"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000641"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0000641","FYPO:0001985","FYPO:0005447","FYPO:0001320","FYPO:0000002"],"is_obsolete":false,"name":"decreased spatial extent of CENP-A containing chromatin assembly","synonyms":[{"name":"decreased extent of CENP-A containing nucleosome","type":"related"},{"name":"decreased spatial extent of CENP-A containing nucleosome assembly","type":"related"},{"name":"decreased spatial extent of CENP-A containing nucleosome assembly at centromere","type":"exact"},{"name":"decreased spatial extent of CENP-A containing nucleosome assembly during mitotic cell cycle","type":"related"},{"name":"decreased spatial extent of CENP-A containing nucleosome assembly during vegetative growth","type":"exact"},{"name":"decreased spatial extent of CENP-A deposition","type":"related"},{"name":"decreased spatial extent of CENP-A loading","type":"related"},{"name":"decreased spatial extent of CenH3-containing nucleosome assembly at centromere","type":"related"},{"name":"decreased spatial extent of DNA replication-independent nucleosome assembly at centromere","type":"exact"},{"name":"decreased spatial extent of centromere-specific histone exchange","type":"exact"},{"name":"decreased spatial extent of centromere-specific nucleosome assembly","type":"exact"},{"name":"decreased spatial extent of centromeric DNA replication-independent nucleosome assembly","type":"exact"},{"name":"reduced spatial extent of CENP-A containing nucleosome assembly","type":"exact"}],"termid":"FYPO:0004322"}


id: PBO:0064785
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protein phosphatase, Mg2+/Mn2+ dependent 1F","termid":"PBO:0064785"}


id: PBO:0071635
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L36a pseudogene 54","termid":"PBO:0071635"}


id: PBO:0030957
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_histone_H3-K9_dimethylation_at_centromere_outer_repeat","termid":"PBO:0030957"}


id: PBO:0039924
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Rho guanine nucleotide exchange factor 26","termid":"PBO:0039924"}


id: PBO:0002342
data:
  {"annotation_feature_type":"gene","cv_name":"sequence_feature","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protein vacuolar sorting signal","termid":"PBO:0002342"}


id: PBO:0063558
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pellino E3 ubiquitin protein ligase family member 2","termid":"PBO:0063558"}


id: PBO:0090175
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ubiquinol-cytochrome-c reductase complex subunit 6","termid":"PBO:0090175"}


id: PR:O74871
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A nuclear protein Hcc-1 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO04388","PANTHER:PTHR21594:SF0","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized protein C31H12.03c (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC31H12.03c","secondary_identifiers":["UniProtKB:O74871"],"synonyms":[{"name":"Spom972h-SARNP","type":"exact"}],"termid":"PR:O74871"}


id: GO:0018359
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The linkage of protein to heme P460 via heme P460-bis-L-cysteine-L-tyrosine.","definition_xrefs":["RESID:AA0266"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein-heme P460 linkage","termid":"GO:0018174"},{"relation_name":"is_a","term_name":"peptidyl-cysteine modification","termid":"GO:0018198"},{"relation_name":"is_a","term_name":"peptidyl-tyrosine modification","termid":"GO:0018212"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0065003"},{"rel_name":"part_of","termid":"GO:0044085"}],"interesting_parent_ids":["GO:0065003","GO:0044085","GO:0008150"],"is_obsolete":false,"name":"protein-heme P460 linkage via heme P460-bis-L-cysteine-L-tyrosine","secondary_identifiers":["GO:0018385"],"synonyms":[{"name":"protein-haem P460 linkage via haem P460-bis-L-cysteine-L-tyrosine","type":"exact"}],"termid":"GO:0018359"}


id: SOFP:element
data:
  {"annotation_feature_type":"gene","cv_name":"feature_property","definition":"name of transposable element class","direct_ancestors":[{"relation_name":"is_a","term_name":"feature_property","termid":"SOFP:feature_property"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"element","termid":"SOFP:element"}


id: GO:0043827
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: adenosine57/adenosine58 in tRNA + 2 S-adenosyl-L-methionine = 2 H+ + N1-methyladenosine57/N1-methyladenosine58 in tRNA + 2 S-adenosyl-L-homocysteine.","definition_xrefs":["PMID:14739239","RHEA:41740","PMID:20483913"],"direct_ancestors":[{"relation_name":"is_a","term_name":"tRNA (adenine) methyltransferase activity","termid":"GO:0016426"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0140101"},{"rel_name":"is_a","termid":"GO:0016741"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0140098"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016740"}],"interesting_parent_ids":["GO:0003824","GO:0016740","GO:0016741","GO:0003674","GO:0140098","GO:0140101"],"is_obsolete":false,"name":"tRNA (adenine(57)-N1)/(adenine(58)-N1)-methyltransferase activity","secondary_identifiers":["EC:2.1.1.219"],"synonyms":[{"name":"tRNA (adenine(57)-N(1))/(adenine(58)-N(1))-methyltransferase activity","type":"exact"},{"name":"tRNA (adenine(57)-N1-)/(adenine(58)-N1-)-methyltransferase activity","type":"exact"},{"name":"tRNA (adenine(57)-N1-/adenine(58)-N1-)-methyltransferase activity","type":"exact"},{"name":"tRNA (adenine-57, 58 N1-) methyltransferase activity","type":"exact"},{"name":"tRNA (adenine-57, 58-N(1)-) methyltransferase activity","type":"exact"},{"name":"tRNA (adenine-57, 58-N1-) methyltransferase activity","type":"exact"}],"termid":"GO:0043827"}


id: GO:0033033
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate, or extent of a myeloid cell apoptotic process.","definition_xrefs":["GOC:mtg_apoptosis","GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of myeloid cell apoptotic process","termid":"GO:0033032"},{"relation_name":"is_a","term_name":"negative regulation of apoptotic process","termid":"GO:0043066"},{"relation_name":"negatively_regulates","term_name":"myeloid cell apoptotic process","termid":"GO:0033028"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of myeloid cell apoptotic process","synonyms":[{"name":"down regulation of myeloid cell apoptosis","type":"exact"},{"name":"down-regulation of myeloid cell apoptosis","type":"exact"},{"name":"downregulation of myeloid cell apoptosis","type":"exact"},{"name":"inhibition of myeloid cell apoptosis","type":"narrow"},{"name":"negative regulation of myeloid cell apoptosis","type":"narrow"}],"termid":"GO:0033033"}


id: FYPO:0006513
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A physical cellular phenotype in which the size, shape, or structure of the telomere is normal (i.e. indistinguishable from wild type) in the vegetative growth phase of the life cycle.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal subcellular component during vegetative growth","termid":"FYPO:0001313"},{"relation_name":"is_a","term_name":"normal telomere morphology","termid":"FYPO:0006512"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0000257","FYPO:0001320"],"is_obsolete":false,"name":"normal telomere morphology during vegetative growth","synonyms":[{"name":"normal telomere morphology during mitotic cell cycle","type":"related"}],"termid":"FYPO:0006513"}


id: GO:0033165
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A specialized extracellularc matrix that surrounds the photoreceptors of the retina and lies between them and the apical surface of the retinal pigment epithelium. The IPM has been implicated in several important activities required for photoreceptor function and maintenance.","definition_xrefs":["PMID:1862095","PMID:2194288"],"direct_ancestors":[{"relation_name":"is_a","term_name":"collagen-containing extracellular matrix","termid":"GO:0062023"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"interphotoreceptor matrix","termid":"GO:0033165"}


id: MOD:01403
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-leucine residue to a (2S)-4,5,5'-trihydroxyleucine.","definition_xrefs":["PubMed:6893271","RESID:AA0480"],"direct_ancestors":[{"relation_name":"is_a","term_name":"trihydroxylated leucine","termid":"MOD:01413"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"(2S)-4,5,5'-trihydroxyleucine","synonyms":[{"name":"(2S)-2-amino-4,5-dihydroxy-4-(hydroxymethyl)pentanoic acid","type":"exact"},{"name":"(2S)-4,5,5'-trihydroxyleucine","type":"exact"},{"name":"4,5,5'-trihydroxyleucine","type":"exact"},{"name":"MOD_RES 4,5,4'-trihydroxyleucine","type":"exact"},{"name":"gamma,delta,delta'-trihydroxyleucine","type":"exact"}],"termid":"MOD:01403"}


id: FYPO:0004195
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype in which the localization of a protein to the telomere of a chromosome is normal (i.e. indistinguishable from wild type) during one or both meiotic nuclear divisions.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal protein localization during meiotic cell cycle","termid":"FYPO:0004095"},{"relation_name":"is_a","term_name":"normal protein localization to chromosome","termid":"FYPO:0004997"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000138"}],"interesting_parent_ids":["FYPO:0000257","FYPO:0000002","FYPO:0000138"],"is_obsolete":false,"name":"normal protein localization to telomere during meiosis","synonyms":[{"name":"normal protein localisation to chromosome, telomeric region, during meiosis","type":"exact"},{"name":"normal protein localisation to telomere during meiosis","type":"exact"},{"name":"normal protein localization to chromosome, telomeric region, during meiosis","type":"exact"},{"name":"normal protein localization to telomere during meiotic nuclear division","type":"exact"}],"termid":"FYPO:0004195"}


id: FYPO:0002194
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"OBSOLETE. A cell population phenotype in which a cell undergoes one or a few rounds of cell division before cells die, resulting in the formation a colony that contains only a few inviable cells that have a larger volume than normal and spheroid shape, and contain one or more septa each. Up to 6 rounds of cell division (generating 64 cells) may be observed, but 3 divisions or fewer is more typical.","definition_xrefs":["PomBase:mah","PomBase:vw"],"gene_count":0,"genotype_count":0,"name":"obsolete inviable microcolony, swollen septated spheroid cells (obsolete FYPO:0002194)","synonyms":[{"name":"inviable microcolony, enlarged septated spheroid vegetative cells","type":"related"},{"name":"inviable microcolony, septated large spheroid vegetative cells","type":"related"},{"name":"inviable microcolony, septated, spheroid vegetative cells with increased cell size","type":"related"},{"name":"inviable microcolony, septated, spheroid vegetative cells with increased cell volume","type":"exact"},{"name":"inviable microcolony, swollen septated rounded cells","type":"exact"},{"name":"inviable microcolony, swollen septated spheroid vegetative cells","type":"exact"}],"termid":"FYPO:0002194"}


id: GO:0035619
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The tip portion of an outgrowth of a root epidermal cell.","definition_xrefs":["PMID:16567499"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell tip","termid":"GO:0051286"},{"relation_name":"part_of","term_name":"root hair","termid":"GO:0035618"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"root hair tip","synonyms":[{"name":"root hair cell tip","type":"exact"}],"termid":"GO:0035619"}


id: PomGeneEx:0000013
data:
  {"annotation_feature_type":"gene","cv_name":"PomGeneExRNA","definition":"A gene expression qualifier that indicates that an RNA is present at the same level under one set of conditions or at one indicated time as otherwise.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"unchanged","termid":"PomGeneEx:0000004"},{"relation_name":"is_a","term_name":"RNA expression level","termid":"PomGeneEx:0000009"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA level unchanged","synonyms":[{"name":"RNA expression unchanged","type":"exact"},{"name":"unchanged RNA level","type":"exact"}],"termid":"PomGeneEx:0000013"}


id: GO:0048444
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which the anatomical structures of the floral organ are generated and organized.","definition_xrefs":["PO:0025395","GOC:go_curators","GOC:PO_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"developmental process involved in reproduction","termid":"GO:0003006"},{"relation_name":"is_a","term_name":"post-embryonic plant organ morphogenesis","termid":"GO:0090697"},{"relation_name":"part_of","term_name":"floral organ development","termid":"GO:0048437"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"floral organ morphogenesis","secondary_identifiers":["GO:0048434"],"termid":"GO:0048444"}


id: PBO:0027611
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_negative_regulation_of_DNA_replication_initiation_during_mitotic_G2_phase_resulting_in_complete_rereplication","termid":"PBO:0027611"}


id: GO:0010864
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that increases the frequency, rate or extent of protein histidine kinase activity.","definition_xrefs":["GOC:tb","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of protein histidine kinase activity","termid":"GO:0032110"},{"relation_name":"is_a","term_name":"positive regulation of protein kinase activity","termid":"GO:0045860"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of protein histidine kinase activity","termid":"GO:0010864"}


id: PBO:0062983
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"proton activated chloride channel 1","termid":"PBO:0062983"}


id: FYPO:0007688
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype in which the localization of a protein to the kinetochore of a chromosome does not occur during metaphase of the first meiotic nuclear division.","definition_xrefs":["PomBase:mah","PMID:16541024"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abolished protein localization to kinetochore during meiosis I","termid":"FYPO:0004763"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000138"}],"interesting_parent_ids":["FYPO:0000138","FYPO:0001985","FYPO:0005447","FYPO:0000002"],"is_obsolete":false,"name":"abolished protein localization to kinetochore during meiotic metaphase I","synonyms":[{"name":"abolished protein localisation to kinetochore during meiotic metaphase I","type":"exact"},{"name":"abolished protein localization to kinetochore during meiosis I metaphase","type":"exact"},{"name":"protein localization to kinetochore abolished during meiotic metaphase I","type":"exact"}],"termid":"FYPO:0007688"}


id: PBO:0061222
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nucleolar and coiled-body phosphoprotein 1","termid":"PBO:0061222"}


id: PBO:0002284
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"20S proteasome component alpha 5, Pup2 (predicted)","termid":"PBO:0002284"}


id: PBO:0073638
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sialic acid binding Ig like lectin 25, pseudogene","termid":"PBO:0073638"}


id: PBO:0084279
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Integral membrane protein of the endoplasmic reticulum; required for normal content of cell wall beta-1,6-glucan","termid":"PBO:0084279"}


id: FYPO:0001301
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which oleoyl-CoA ligase activity is absent.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal oleoyl-CoA ligase activity","termid":"FYPO:0001300"},{"relation_name":"is_a","term_name":"abolished long-chain fatty acid-CoA ligase activity","termid":"FYPO:0001306"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000654"},{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0000661"},{"rel_name":"is_a","termid":"FYPO:0000707"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0000661","FYPO:0000654","FYPO:0001985","FYPO:0000652","FYPO:0000707","FYPO:0005447","FYPO:0000002"],"is_obsolete":false,"name":"abolished oleoyl-CoA ligase activity","synonyms":[{"name":"abolished oleoyl-CoA synthetase activity","type":"exact"},{"name":"oleoyl-CoA ligase activity abolished","type":"exact"}],"termid":"FYPO:0001301"}


id: GO:0051419
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Binding to nebulin, a large protein (approximately 800kD) that is anchored at the Z-disc by its C-terminal region and spans the length of the thin filament, ending at the edge of the H-zone.","definition_xrefs":["PMID:11699871"],"gene_count":0,"genotype_count":0,"name":"obsolete nebulin binding (obsolete GO:0051419)","synonyms":[{"name":"nebulin binding","type":"exact"}],"termid":"GO:0051419"}


id: PBO:0052341
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"kinesin family member 1B","termid":"PBO:0052341"}


id: PBO:0076713
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transcription factor 19","termid":"PBO:0076713"}


id: SO:0002368
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A gene that codes for plastid SSU rRNA.","direct_ancestors":[{"relation_name":"is_a","term_name":"plastid_rRNA_gene","termid":"SO:0002366"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"plastid_SSU_rRNA_gene","synonyms":[{"name":"plastid small subunit rRNA gene","type":"exact"}],"termid":"SO:0002368"}


id: PBO:0081333
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein 133","termid":"PBO:0081333"}


id: PBO:0030273
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_negative_regulation_of_mitotic_DNA_replication_initiation_resulting_in_complete_rereplication","termid":"PBO:0030273"}


id: PBO:0054855
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2269","termid":"PBO:0054855"}


id: GO:0050795
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of behavior, the internally coordinated responses (actions or inactions) of whole living organisms (individuals or groups) to internal or external stimuli.","definition_xrefs":["GOC:go_curators","GOC:pr"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of multicellular organismal process","termid":"GO:0051239"},{"relation_name":"regulates","term_name":"behavior","termid":"GO:0007610"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of behavior","synonyms":[{"name":"regulation of behaviour","type":"exact"}],"termid":"GO:0050795"}


id: PR:P0CY17
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- mat1-Mc gene.","definition_xrefs":["PRO:DNx","UniProtKB:P0CY17"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mating-type M-specific polypeptide Mc (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC23G7.09","synonyms":[{"name":"Spom972h-mat1-Mc","type":"exact"},{"name":"mat-Mc (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:P0CY17"}


id: GO:0032930
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of enzymatic generation of superoxide by a cell.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of superoxide anion generation","termid":"GO:0032928"},{"relation_name":"is_a","term_name":"positive regulation of reactive oxygen species metabolic process","termid":"GO:2000379"},{"relation_name":"positively_regulates","term_name":"superoxide anion generation","termid":"GO:0042554"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of superoxide anion generation","synonyms":[{"name":"activation of superoxide release","type":"narrow"},{"name":"positive regulation of superoxide release","type":"exact"},{"name":"stimulation of superoxide release","type":"narrow"},{"name":"up regulation of superoxide release","type":"exact"},{"name":"up-regulation of superoxide release","type":"exact"},{"name":"upregulation of superoxide release","type":"exact"}],"termid":"GO:0032930"}


id: PBO:0085469
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Prephenate dehydratase; catalyzes the conversion of prephanate to phenylpyruvate, which is a step in the phenylalanine biosynthesis pathway","termid":"PBO:0085469"}


id: FYPO:0006847
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the total amount of protein measured in a cell is higher than normal.","definition_xrefs":["PomBase:jh","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased protein level during vegetative growth","termid":"FYPO:0001327"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0006551"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0001985","FYPO:0001320","FYPO:0006551","FYPO:0000002"],"is_obsolete":false,"name":"increased total protein level during vegetative growth","synonyms":[{"name":"increased total protein accumulation during vegetative growth","type":"related"},{"name":"increased total protein content during vegetative growth","type":"exact"},{"name":"increased total protein level during mitotic cell cycle","type":"related"}],"termid":"FYPO:0006847"}


id: GO:0017075
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a syntaxin-1 SNAP receptor.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"syntaxin binding","termid":"GO:0019905"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005515"},{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0005515","GO:0005488","GO:0003674"],"is_obsolete":false,"name":"syntaxin-1 binding","termid":"GO:0017075"}


id: PBO:0048430
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glucosylceramidase beta 1","termid":"PBO:0048430"}


id: PBO:0055777
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"lon peptidase 1, mitochondrial","termid":"PBO:0055777"}


id: PBO:0060177
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"metaxin 1 pseudogene 1","termid":"PBO:0060177"}


id: SO:0000474
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A piece of sequence that makes up a tiling_path (SO:0000472).","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"assembly_component","termid":"SO:0000143"},{"relation_name":"part_of","term_name":"tiling_path","termid":"SO:0000472"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tiling_path_fragment","synonyms":[{"name":"tiling path fragment","type":"exact"}],"termid":"SO:0000474"}


id: GO:0021748
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of the dorsal cochlear nucleus over time, from its formation to the mature structure.","definition_xrefs":["GOC:cls","GOC:dgh","GOC:dph","GOC:jid","GO_REF:0000021","GOC:curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cochlear nucleus development","termid":"GO:0021747"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"dorsal cochlear nucleus development","termid":"GO:0021748"}


id: GO:1902100
data:
  {"annotated_genes":["SJAG_03681","SJAG_04259","SJAG_02169","SJAG_01330","SJAG_01837","SJAG_04699","SJAG_01082","SJAG_04999","SJAG_02336","SJAG_01297","SJAG_03126","SJAG_01679","SJAG_02451","SJAG_04884","SJAG_03327","SJAG_01515","SJAG_04126","SJAG_03353","SJAG_00883"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[110404,110898,95776,100211,86624,103630,104688,108494,112587],"is_not":false,"rel_names":["negatively_regulates","regulates"],"summary":null,"term":"GO:1902426"},{"annotations":[102690,111141],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1905318"},{"annotations":[113372,98048],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0033316"},{"annotations":[106371,95626,98049,111145,102692,112214],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0007094"},{"annotations":[94866],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1902103"},{"annotations":[90250],"is_not":false,"rel_names":["negatively_regulates","regulates"],"summary":null,"term":"GO:0140499"},{"annotations":[110409],"is_not":false,"rel_names":["regulates","positively_regulates"],"summary":null,"term":"GO:1905326"},{"annotations":[113379],"is_not":false,"rel_names":["positively_regulates","regulates"],"summary":null,"term":"GO:0090267"},{"annotations":[97572],"is_not":false,"rel_names":["regulates"],"summary":null,"term":"GO:1905325"}]},"cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of metaphase/anaphase transition of cell cycle.","definition_xrefs":["GOC:mtg_cell_cycle","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of cell cycle phase transition","termid":"GO:1901988"},{"relation_name":"is_a","term_name":"regulation of metaphase/anaphase transition of cell cycle","termid":"GO:1902099"},{"relation_name":"negatively_regulates","term_name":"metaphase/anaphase transition of cell cycle","termid":"GO:0044784"}],"gene_count":19,"genes_by_uniquename":{"SJAG_00883":null,"SJAG_01082":null,"SJAG_01297":null,"SJAG_01330":null,"SJAG_01515":null,"SJAG_01679":null,"SJAG_01837":null,"SJAG_02169":null,"SJAG_02336":null,"SJAG_02451":null,"SJAG_03126":null,"SJAG_03327":null,"SJAG_03353":null,"SJAG_03681":null,"SJAG_04126":null,"SJAG_04259":null,"SJAG_04699":null,"SJAG_04884":null,"SJAG_04999":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0007049"},{"rel_name":"negatively_regulates","termid":"GO:0007049"}],"interesting_parent_ids":["GO:0008150","GO:0007049"],"is_obsolete":false,"name":"negative regulation of metaphase/anaphase transition of cell cycle","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"down regulation of metaphase/anaphase transition of cell cycle","type":"exact"},{"name":"down-regulation of metaphase/anaphase transition of cell cycle","type":"exact"},{"name":"downregulation of metaphase/anaphase transition of cell cycle","type":"exact"},{"name":"inhibition of metaphase/anaphase transition of cell cycle","type":"narrow"}],"termid":"GO:1902100","terms_by_termid":{"GO:0007094":null,"GO:0033316":null,"GO:0090267":null,"GO:0140499":null,"GO:1902103":null,"GO:1902426":null,"GO:1905318":null,"GO:1905325":null,"GO:1905326":null}}


id: GO:1901318
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of flagellated sperm motility.","definition_xrefs":["GOC:cilia","GOC:TermGenie","GOC:krc"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of cilium movement","termid":"GO:0003354"},{"relation_name":"is_a","term_name":"regulation of flagellated sperm motility","termid":"GO:1901317"},{"relation_name":"is_a","term_name":"negative regulation of cilium-dependent cell motility","termid":"GO:1902020"},{"relation_name":"is_a","term_name":"negative regulation of reproductive process","termid":"GO:2000242"},{"relation_name":"negatively_regulates","term_name":"flagellated sperm motility","termid":"GO:0030317"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of flagellated sperm motility","synonyms":[{"name":"down regulation of sperm motility","type":"broad"},{"name":"down regulation of sperm movement","type":"broad"},{"name":"down-regulation of sperm motility","type":"broad"},{"name":"down-regulation of sperm movement","type":"broad"},{"name":"downregulation of sperm motility","type":"broad"},{"name":"downregulation of sperm movement","type":"broad"},{"name":"inhibition of sperm motility","type":"narrow"},{"name":"inhibition of sperm movement","type":"broad"},{"name":"negative regulation of sperm motility","type":"broad"},{"name":"negative regulation of sperm movement","type":"broad"}],"termid":"GO:1901318"}


id: GO:2000286
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A receptor internalization process that contributes to canonical Wnt signaling pathway.","definition_xrefs":["GOC:mah","PMID:16890161","GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"receptor internalization","termid":"GO:0031623"},{"relation_name":"part_of","term_name":"canonical Wnt signaling pathway","termid":"GO:0060070"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0016192"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0006810","GO:0016192","GO:0008150","GO:0023052","GO:0051179"],"is_obsolete":false,"name":"receptor internalization involved in canonical Wnt signaling pathway","synonyms":[{"name":"receptor internalization involved in Wnt receptor signaling pathway through beta-catenin","type":"exact"},{"name":"receptor internalization involved in Wnt receptor signaling pathway via beta-catenin","type":"exact"},{"name":"receptor internalization involved in Wnt receptor signalling pathway through beta-catenin","type":"exact"},{"name":"receptor internalization involved in canonical Wnt receptor signaling pathway","type":"exact"},{"name":"receptor internalization involved in canonical Wnt receptor signalling pathway","type":"exact"},{"name":"receptor internalization involved in canonical Wnt-activated signaling pathway","type":"exact"},{"name":"receptor internalization involved in frizzled-1 receptor signaling pathway","type":"related"}],"termid":"GO:2000286"}


id: PBO:0027867
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-thin_mitotic_spindle_midzone","termid":"PBO:0027867"}


id: PBO:0110367
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"EPS8 signaling adaptor L1","termid":"PBO:0110367"}


id: PBO:0072641
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA 2',3'-cyclic phosphate and 5'-OH ligase","termid":"PBO:0072641"}


id: PBO:0031241
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_actin_cortical_patch_localization","termid":"PBO:0031241"}


id: PBO:0065949
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RAD17 checkpoint clamp loader component","termid":"PBO:0065949"}


id: MOD:00721
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively oxygenates an L-methionine residue to L-methionine sulfoxide S-diastereomer.","definition_xrefs":["PubMed:18688235"],"direct_ancestors":[{"relation_name":"is_a","term_name":"L-methionine sulfoxide","termid":"MOD:00719"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"L-methionine (S)-sulfoxide","synonyms":[{"name":"MOD_RES Methionine (S)-sulfoxide","type":"exact"},{"name":"S-MetO","type":"exact"}],"termid":"MOD:00721"}


id: PBO:0015666
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial NADH dehydrogenase (ubiquinone)(predicted)","termid":"PBO:0015666"}


id: PBO:0002127
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RTA1-like protein","termid":"PBO:0002127"}


id: GO:0021625
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A developmental process, independent of morphogenetic (shape) change, that is required for the oculomotor nerve to attain its fully functional state. This motor nerve innervates all extraocular muscles except the superior oblique and the lateral rectus muscles. The superior division supplies the levator palpebrae superioris and superior rectus muscles. The inferior division supplies the medial rectus, inferior rectus and inferior oblique muscles. This nerve also innervates the striated muscles of the eyelid. Pupillary constriction and lens movement are mediated by this nerve for near vision. In the orbit the inferior division sends branches that enter the ciliary ganglion where they form functional contacts (synapses) with the ganglion cells. The ganglion cells send nerve fibers into the back of the eye where they travel to ultimately innervate the ciliary muscle and the constrictor pupillae muscle.","definition_xrefs":["GOC:dph","GOC:cls","GOC:dgh","GOC:jid","ISBN:0838580343","GO_REF:0000021"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cranial nerve maturation","termid":"GO:0021605"},{"relation_name":"part_of","term_name":"oculomotor nerve development","termid":"GO:0021557"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"oculomotor nerve maturation","synonyms":[{"name":"CN III maturation","type":"related"}],"termid":"GO:0021625"}


id: GO:0019759
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of glycosinolates, substituted thioglycosides found in rapeseed products and related cruciferae.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"glycosinolate metabolic process","termid":"GO:0019757"},{"relation_name":"is_a","term_name":"sulfur compound catabolic process","termid":"GO:0044273"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006790"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0019748"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0044248"}],"interesting_parent_ids":["GO:0008150","GO:0019748","GO:0006790","GO:0044281","GO:0044248"],"is_obsolete":false,"name":"glycosinolate catabolic process","synonyms":[{"name":"glycosinolate breakdown","type":"exact"},{"name":"glycosinolate catabolism","type":"exact"},{"name":"glycosinolate degradation","type":"exact"}],"termid":"GO:0019759"}


id: RO:0000059
data:
  {"annotation_feature_type":"gene","cv_name":"relationship","definition":"A relationship between a specifically dependent continuant and a generically dependent continuant, in which the generically dependent continuant depends on some independent continuant in virtue of the fact that the specifically dependent continuant also depends on that same independent continuant. Multiple specifically dependent continuants can concretize the same generically dependent continuant.","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"concretizes","termid":"RO:0000059"}


id: GO:0001971
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of the activation of the membrane attack complex components of the complement cascade.","definition_xrefs":["GOC:hjd"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of activation of membrane attack complex","termid":"GO:0001969"},{"relation_name":"is_a","term_name":"negative regulation of complement activation","termid":"GO:0045916"},{"relation_name":"negatively_regulates","term_name":"activation of membrane attack complex","termid":"GO:0001905"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of activation of membrane attack complex","synonyms":[{"name":"down regulation of activation of membrane attack complex","type":"exact"},{"name":"down-regulation of activation of membrane attack complex","type":"exact"},{"name":"downregulation of activation of membrane attack complex","type":"exact"},{"name":"inhibition of activation of membrane attack complex","type":"narrow"},{"name":"negative regulation of MAC assembly","type":"exact"},{"name":"negative regulation of MAC formation","type":"exact"},{"name":"negative regulation of activation of MAC","type":"exact"},{"name":"negative regulation of activation of TCC","type":"narrow"},{"name":"negative regulation of activation of terminal complement complex","type":"narrow"},{"name":"negative regulation of activation of the terminal complement cascade","type":"narrow"},{"name":"negative regulation of membrane attack complex assembly","type":"exact"},{"name":"negative regulation of membrane attack complex formation","type":"exact"}],"termid":"GO:0001971"}


id: PBO:0091615
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"serine acetyltransferase","termid":"PBO:0091615"}


id: PBO:0005254
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"M phase inhibitor protein kinase Wee1","termid":"PBO:0005254"}


id: GO:0032470
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that increases the concentration of calcium ions in the endoplasmic reticulum.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"endoplasmic reticulum calcium ion homeostasis","termid":"GO:0032469"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0098771"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0098771","GO:0008150"],"is_obsolete":false,"name":"positive regulation of endoplasmic reticulum calcium ion concentration","synonyms":[{"name":"elevation of ER calcium ion concentration","type":"exact"},{"name":"elevation of calcium ion concentration in endoplasmic reticulum","type":"exact"},{"name":"elevation of endoplasmic reticulum calcium ion concentration","type":"exact"},{"name":"endoplasmic reticulum calcium ion concentration elevation","type":"exact"}],"termid":"GO:0032470"}


id: PBO:0078412
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-Gly (CCC) 6-1","termid":"PBO:0078412"}


id: GO:0090612
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: cyclic adenosine monophosphate + H2O = cyclic inosine monophosphate + NH3.","definition_xrefs":["PMID:24074367","RHEA:22908"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines","termid":"GO:0016814"},{"relation_name":"is_a","term_name":"deaminase activity","termid":"GO:0019239"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016810"},{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016810","GO:0016787","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"cAMP deaminase activity","secondary_identifiers":["EC:3.5.4.46"],"synonyms":[{"name":"cyclic adenosine monophosphate deaminase activity","type":"exact"}],"termid":"GO:0090612"}


id: MOD:00945
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"OBSOLETE because redundant and identical to MOD:00626. Remap to MOD:00626.","definition_xrefs":["PubMed:18688235"],"gene_count":0,"genotype_count":0,"name":"OBSOLETE MOD:00945 fluorescein-5-thiosemicarbazide adduct (obsolete MOD:00945)","termid":"MOD:00945"}


id: GO:0060940
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A transition where an epicardial cell loses apical/basolateral polarity, severs intercellular adhesive junctions, degrades basement membrane components and becomes a migratory mesenchymal cell that will mature into a cardiac fibroblast.","definition_xrefs":["GOC:mtg_heart"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cardiac epithelial to mesenchymal transition","termid":"GO:0060317"},{"relation_name":"part_of","term_name":"epicardium-derived cardiac fibroblast cell development","termid":"GO:0060939"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"epithelial to mesenchymal transition involved in cardiac fibroblast development","termid":"GO:0060940"}


id: PBO:0075724
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"spermidine synthase","termid":"PBO:0075724"}


id: PBO:0002652
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"secretory pathway protein Sec18 (predicted)","termid":"PBO:0002652"}


id: PBO:0089917
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"multi-spanning vacuolar membrane protease","termid":"PBO:0089917"}


id: GO:1904305
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of gastro-intestinal system smooth muscle contraction.","definition_xrefs":["PMID:10821044","GOC:TermGenie","GO_REF:0000058"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of smooth muscle contraction","termid":"GO:0045986"},{"relation_name":"is_a","term_name":"regulation of gastro-intestinal system smooth muscle contraction","termid":"GO:1904304"},{"relation_name":"negatively_regulates","term_name":"gastro-intestinal system smooth muscle contraction","termid":"GO:0014831"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of gastro-intestinal system smooth muscle contraction","synonyms":[{"name":"down regulation of gastro-intestinal system smooth muscle contraction","type":"exact"},{"name":"down-regulation of gastro-intestinal system smooth muscle contraction","type":"exact"},{"name":"downregulation of gastro-intestinal system smooth muscle contraction","type":"exact"},{"name":"inhibition of gastro-intestinal system smooth muscle contraction","type":"narrow"}],"termid":"GO:1904305"}


id: PBO:0052539
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"kallikrein related peptidase 12","termid":"PBO:0052539"}


id: SO:0001851
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A GATA promoter element with consensus sequence WGATAA, found in promoters of genes repressed in the presence of iron.","definition_xrefs":["PMID:11956219","PMID:17211681"],"direct_ancestors":[{"relation_name":"is_a","term_name":"GATA_box","termid":"SO:0001840"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"iron_repressed_GATA_element","synonyms":[{"name":"IDP (GATA)","type":"exact"},{"name":"iron repressed GATA element","type":"exact"}],"termid":"SO:0001851"}


id: FYPO:0007830
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which a protein located in the medial cortical nodes occupies an area with a smaller radius than normal during interphase of the mitotic cell cycle. The nodes are \\\"precursor\\\" nodes that exist before the contractile ring is formed.","definition_xrefs":["PMID:33496728","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal protein localization to medial cortical node","termid":"FYPO:0003289"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000138"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0000138","FYPO:0000002","FYPO:0001985","FYPO:0005447"],"is_obsolete":false,"name":"narrow protein radial density distribution in medial cortical node during mitotic interphase","synonyms":[{"name":"decreased protein RDD in medial cortical node during mitotic interphase","type":"exact"},{"name":"decreased protein radial density distribution in medial cortical node during mitotic interphase","type":"exact"},{"name":"narrow protein RDD in medial cortical node during mitotic interphase","type":"exact"},{"name":"narrow protein radial density distribution in medial cortical P-node","type":"related"},{"name":"narrow protein radial density distribution in medial cortical node during interphase of mitotic cell cycle","type":"exact"},{"name":"narrow protein radial density distribution in medial cortical node during mitotic interphase during vegetative growth","type":"exact"},{"name":"narrow protein radial density distribution in medial cortical precursor node","type":"related"},{"name":"narrow radial density distribution of protein in medial cortical node during mitotic interphase","type":"exact"},{"name":"reduced protein radial density distribution in medial cortical node during mitotic interphase","type":"exact"}],"termid":"FYPO:0007830"}


id: GO:1904655
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of lung alveolus development.","definition_xrefs":["PMID:23962064","GOC:TermGenie","GO_REF:0000058"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of developmental process","termid":"GO:0051094"},{"relation_name":"is_a","term_name":"positive regulation of multicellular organismal process","termid":"GO:0051240"},{"relation_name":"is_a","term_name":"regulation of lung alveolus development","termid":"GO:1904653"},{"relation_name":"positively_regulates","term_name":"lung alveolus development","termid":"GO:0048286"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of lung alveolus development","synonyms":[{"name":"activation of alveolarization","type":"narrow"},{"name":"activation of alveologenesis","type":"narrow"},{"name":"activation of lung alveolus development","type":"narrow"},{"name":"positive regulation of alveolarization","type":"exact"},{"name":"positive regulation of alveologenesis","type":"exact"},{"name":"up regulation of alveolarization","type":"exact"},{"name":"up regulation of alveologenesis","type":"exact"},{"name":"up regulation of lung alveolus development","type":"exact"},{"name":"up-regulation of alveolarization","type":"exact"},{"name":"up-regulation of alveologenesis","type":"exact"},{"name":"up-regulation of lung alveolus development","type":"exact"},{"name":"upregulation of alveolarization","type":"exact"},{"name":"upregulation of alveologenesis","type":"exact"},{"name":"upregulation of lung alveolus development","type":"exact"}],"termid":"GO:1904655"}


id: GO:0097265
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 5-HETE + NADP+ = 5-oxo-ETE + NADPH + H+.","definition_xrefs":["GOC:mw","PMID:1326548"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor","termid":"GO:0016616"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0016491","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"5(S)-hydroxyeicosatetraenoic acid dehydrogenase activity","secondary_identifiers":["Reactome:R-HSA-2161776"],"synonyms":[{"name":"5(S)-HETE dehydrogenase activity","type":"exact"},{"name":"5-HETE dehydrogenase activity","type":"exact"},{"name":"5-hydroxy-eicosatetraenoic acid dehydrogenase activity","type":"exact"}],"termid":"GO:0097265"}


id: PBO:0072481
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein SA pseudogene 10","termid":"PBO:0072481"}


id: PBO:0045693
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dynein light chain Tctex-type 1","termid":"PBO:0045693"}


id: PBO:0085053
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Non-essential protein of unknown function; induced by treatment with 8-methoxypsoralen and UVA irradiation; ECM13 has a paralog, YJR115W, that arose from the whole genome duplication","termid":"PBO:0085053"}


id: PBO:0003285
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DNA replication factor C complex subunit Elg1","termid":"PBO:0003285"}


id: GO:0052023
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The alteration by an organism of the levels of salicylic acid in the host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction.","definition_xrefs":["GOC:mtg_pamgo_17jul06"],"gene_count":0,"genotype_count":0,"name":"obsolete modulation by symbiont of salicylic acid levels in host (obsolete GO:0052023)","synonyms":[{"name":"modulation by organism of salicylic acid levels in other organism involved in symbiotic interaction","type":"broad"}],"termid":"GO:0052023"}


id: PBO:0031557
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_catalytic_activity","termid":"PBO:0031557"}


id: PBO:0111341
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SHREC complex subunit Clr2","termid":"PBO:0111341"}


id: FYPO:0003529
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A phenotype in which a spore germinates to produce a cell that enters the cell cycle and undergoes two or more rounds of cell division, but then becomes elongated and undergoes cell cycle arrest in interphase of the mitotic cell cycle, and eventually dies.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"inviable after spore germination, multiple cell divisions, elongated cell","termid":"FYPO:0002262"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"has_part","termid":"FYPO:0000005"},{"rel_name":"has_part","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"has_part","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000005"},{"rel_name":"has_part","termid":"FYPO:0000004"},{"rel_name":"is_a","termid":"FYPO:0000004"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0001320","FYPO:0000005","FYPO:0000004","FYPO:0000002"],"is_obsolete":false,"name":"inviable after spore germination, multiple cell divisions, cell cycle arrest in mitotic interphase, elongated cells","synonyms":[{"name":"inviable after spore germination, multiple cell divisions, elongated aseptate cell","type":"exact"},{"name":"inviable after spore germination, multiple cell divisions, elongated cell arrested at interphase","type":"exact"},{"name":"inviable germinated spore, multiple cell divisions, cell cycle arrest in mitotic interphase, elongated cells","type":"exact"},{"name":"lethal after spore germination, multiple cell divisions, cell cycle arrest in mitotic interphase, elongated cells","type":"exact"}],"termid":"FYPO:0003529"}


id: RO:HOM0000008
data:
  {"annotation_feature_type":"gene","cv_name":"relationship","definition":"Homology that is defined by sharing of a set of developmental constraints, caused by locally acting self-regulatory mechanisms of differentiation, between individualized parts of the phenotype.","direct_ancestors":[{"relation_name":"is_a","term_name":"in_homology_relationship_with","termid":"RO:HOM0000001"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"in_biological_homology_relationship_with","synonyms":[{"name":"biological homologous to","type":"exact"},{"name":"transformational homology","type":"related"}],"termid":"RO:HOM0000008"}


id: PR:O94662
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPBC651.04 gene.","definition_xrefs":["PRO:DNx","UniProtKB:O94662"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized protein C651.04 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC651.04","synonyms":[{"name":"Spom972h-SPBC651.04","type":"exact"}],"termid":"PR:O94662"}


id: GO:0034305
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of spore formation from the products of mitosis.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of sporulation","termid":"GO:0043937"},{"relation_name":"is_a","term_name":"regulation of asexual reproduction","termid":"GO:1903664"},{"relation_name":"regulates","term_name":"asexual sporulation","termid":"GO:0030436"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of asexual sporulation","synonyms":[{"name":"regulation of asexual spore formation","type":"exact"},{"name":"regulation of mitotic spore formation","type":"exact"},{"name":"regulation of mitotic sporulation","type":"exact"}],"termid":"GO:0034305"}


id: PBO:0077746
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TOG array regulator of axonemal microtubules 1","termid":"PBO:0077746"}


id: PBO:0015232
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ubiquitin-protein ligase E3 Pep5/Vps11-like (predicted)","termid":"PBO:0015232"}


id: PBO:0029794
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_rate_of_actin_cable_retrograde_transport","termid":"PBO:0029794"}


id: PBO:0027491
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_protein_oxidation_in_stationary_phase","termid":"PBO:0027491"}


id: PBO:0031215
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_protein_oxidation_during_vegetative_growth","termid":"PBO:0031215"}


id: PBO:0078018
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"T cell receptor alpha joining 8","termid":"PBO:0078018"}


id: PBO:0075125
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"syntaphilin","termid":"PBO:0075125"}


id: PBO:0068942
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 185, pseudogene","termid":"PBO:0068942"}


id: PBO:0002687
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pheromone p-factor receptor","termid":"PBO:0002687"}


id: PBO:0079880
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uroplakin 1B","termid":"PBO:0079880"}


id: PBO:0035763
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_microtubule_nucleation_during_mitotic_interphase","termid":"PBO:0035763"}


id: GO:0048396
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of intermediate mesoderm cell fate determination.","definition_xrefs":["GOC:dgh"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of mesodermal cell fate determination","termid":"GO:0048335"},{"relation_name":"is_a","term_name":"regulation of intermediate mesodermal cell fate determination","termid":"GO:0048395"},{"relation_name":"negatively_regulates","term_name":"intermediate mesodermal cell fate determination","termid":"GO:0048394"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of intermediate mesodermal cell fate determination","synonyms":[{"name":"down regulation of intermediate mesodermal cell fate determination","type":"exact"},{"name":"down-regulation of intermediate mesodermal cell fate determination","type":"exact"},{"name":"downregulation of intermediate mesodermal cell fate determination","type":"exact"},{"name":"inhibition of intermediate mesodermal cell fate determination","type":"narrow"}],"termid":"GO:0048396"}


id: FYPO:0002302
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A phenotype in which a spore germinates to produce a cell that is spheroid, and undergoes two or more rounds of cell division and then dies.","definition_xrefs":["PomBase:mah","PomBase:al"],"direct_ancestors":[{"relation_name":"is_a","term_name":"inviable after spore germination, multiple cell divisions, abnormal morphology","termid":"FYPO:0002148"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000005"},{"rel_name":"has_part","termid":"FYPO:0000005"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"has_part","termid":"FYPO:0001985"},{"rel_name":"has_part","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000004"}],"interesting_parent_ids":["FYPO:0000004","FYPO:0000002","FYPO:0001985","FYPO:0000005","FYPO:0001320"],"is_obsolete":false,"name":"inviable after spore germination, multiple cell divisions, spheroid cell","synonyms":[{"name":"inviable after spore germination, multiple cell divisions, rounded cell","type":"exact"},{"name":"inviable following spore germination, multiple cell divisions, spheroid cell","type":"exact"},{"name":"inviable germinated spore, multiple cell divisions, spheroid cell","type":"exact"},{"name":"lethal after spore germination, multiple cell divisions, spheroid cell","type":"exact"}],"termid":"FYPO:0002302"}


id: GO:0016970
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. A blue, copper-containing oxygen carrier present in many molluscs and arthropods.","definition_xrefs":["ISBN:0198506732","GOC:ai"],"gene_count":0,"genotype_count":0,"name":"obsolete hemocyanin (obsolete GO:0016970)","synonyms":[{"name":"hemocyanin","type":"exact"}],"termid":"GO:0016970"}


id: PBO:0065048
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PRELI domain containing 3B pseudogene 2","termid":"PBO:0065048"}


id: FYPO:0003893
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which the insertion of ATP opposite an 8-oxo-7,8-dihydroguanosine (8oxodG) residue in DNA does not occur. Normally, if a guanosine residue is damaged to form 8oxodG, ATP can be misincorporated into the opposite strand to form an 8oxodG:AMP mispair that is subsequently removed.","definition_xrefs":["PomBase:mah","PMID:25106870"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal error-prone translesion synthesis","termid":"FYPO:0003892"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000298"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000293"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0000293","FYPO:0000002","FYPO:0000298","FYPO:0005447","FYPO:0001985"],"is_obsolete":false,"name":"abolished incorporation of ATP opposite 8-oxo-dG","synonyms":[{"name":"abolished incorporation of ATP opposite 8-oxo-7,8-dihydroguanosine","type":"exact"},{"name":"abolished insertion of ATP opposite 8-oxo-dG","type":"exact"},{"name":"incorporation of ATP opposite 8-oxo-dG abolished","type":"exact"}],"termid":"FYPO:0003893"}


id: GO:0060093
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops or decreases the frequency, rate or extent of glycinergic synaptic transmission. Glycinergic synaptic transmission is the process of communication from a neuron to another neuron across a synapse using the neurotransmitter glycine.","definition_xrefs":["GOC:dms","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of synaptic transmission","termid":"GO:0050805"},{"relation_name":"is_a","term_name":"regulation of synaptic transmission, glycinergic","termid":"GO:0060092"},{"relation_name":"negatively_regulates","term_name":"synaptic transmission, glycinergic","termid":"GO:0060012"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"negatively_regulates","termid":"GO:0023052"},{"rel_name":"regulates","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"negative regulation of synaptic transmission, glycinergic","synonyms":[{"name":"negative regulation of glycinergic synaptic transmission","type":"exact"}],"termid":"GO:0060093"}


id: PBO:0052028
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"JPT1 pseudogene 1","termid":"PBO:0052028"}


id: PBO:0043176
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CIR1 pseudogene 3","termid":"PBO:0043176"}


id: PBO:0055840
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"leucine rich repeats and immunoglobulin like domains 1","termid":"PBO:0055840"}


id: PBO:0084538
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Member of the p24 family involved in ER to Golgi transport; role in misfolded protein quality control; forms a heterotrimeric complex with Erp1, Erp2p, and Emp24,","termid":"PBO:0084538"}


id: GO:0039721
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A nuclear viral factory formed at the periphery of the host cell nucleus by Baculoviruses.","definition_xrefs":["VZ:1951","PMID:18434402"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nuclear viral factory","termid":"GO:0039715"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"peristromal region viral factory","synonyms":[{"name":"PR","type":"related"}],"termid":"GO:0039721"}


id: PBO:0029192
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-merotelic_kinetochore_attachment","termid":"PBO:0029192"}


id: PBO:0077715
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transportin 1 pseudogene 1","termid":"PBO:0077715"}


id: PBO:0088021
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"U1 snRNP A protein; homolog of human U1-A; involved in nuclear mRNA splicing","termid":"PBO:0088021"}


id: PBO:0035900
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_re-entry_into_mitotic_cell_cycle_after_arrest_in_response_to_heat_shock","termid":"PBO:0035900"}


id: FYPO:0002102
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell cycle checkpoint phenotype in which any mitotic DNA damage checkpoint is normal (i.e. indistinguishable from wild type) when the cell is exposed to ultraviolet light. A DNA damage checkpoint normally regulates progression through the cell cycle in response to DNA damage.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal mitotic DNA damage checkpoint","termid":"FYPO:0001705"},{"relation_name":"is_a","term_name":"normal mitotic cell cycle regulation during cellular response to UV","termid":"FYPO:0004014"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001312"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0000298"},{"rel_name":"is_a","termid":"FYPO:0000257"}],"interesting_parent_ids":["FYPO:0001312","FYPO:0001320","FYPO:0000631","FYPO:0000002","FYPO:0000298","FYPO:0000257"],"is_obsolete":false,"name":"normal mitotic DNA damage checkpoint during cellular response to UV","synonyms":[{"name":"normal DNA damage checkpoint during cellular response to UV during mitotic cell cycle","type":"exact"},{"name":"normal mitotic DNA damage checkpoint activation during cellular response to UV","type":"exact"},{"name":"normal mitotic DNA damage checkpoint during cellular response to UV during vegetative growth","type":"exact"},{"name":"normal mitotic DNA damage checkpoint during cellular response to ultraviolet light","type":"exact"}],"termid":"FYPO:0002102"}


id: PBO:0031581
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_cell_population_growth_rate_on_glucose_carbon_source","termid":"PBO:0031581"}


id: PBO:0027678
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_mitochondrial_translation","termid":"PBO:0027678"}


id: PBO:0067011
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 19, pseudogene","termid":"PBO:0067011"}


id: PBO:0047972
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Frey regulator of sperm-oocyte fusion 1","termid":"PBO:0047972"}


id: PBO:0053773
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1018","termid":"PBO:0053773"}


id: PBO:0089582
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DYRK family cell polarity protein kinase Pom1","termid":"PBO:0089582"}


id: GO:0000417
data:
  {"annotated_genes":["SJAG_00914","SJAG_00925","SJAG_04561","SJAG_00913"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[73294,99866,105214,109373],"is_not":false,"summary":null,"term":"GO:0000417"}]},"cv_name":"cellular_component","definition":"A protein complex proposed to be involved in replication-independent nucleosome assembly, by promoting histone deposition onto DNA. For example, in Saccharomyces, the complex contains Hir1p, Hir2p, Hir3p, and Hpc2p.","definition_xrefs":["PMID:16303565","GOC:mah","GOC:elh","PMID:17180700"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein-containing complex","termid":"GO:0032991"}],"gene_count":4,"genes_by_uniquename":{"SJAG_00913":null,"SJAG_00914":null,"SJAG_00925":null,"SJAG_04561":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0005575","GO:0032991"],"is_obsolete":false,"name":"HIR complex","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"synonyms":[{"name":"HIRA complex","type":"exact"}],"termid":"GO:0000417","terms_by_termid":{"GO:0000417":null}}


id: PBO:0052698
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"keratin 16 pseudogene 6","termid":"PBO:0052698"}


id: PBO:0063856
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"P38 inhibited cutaneous squamous cell carcinoma associated lincRNA","termid":"PBO:0063856"}


id: PBO:0069784
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 1069, pseudogene","termid":"PBO:0069784"}


id: GO:0004052
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: arachidonate + O2 = (5Z,8Z,10E,12S,14Z)-12-hydroperoxyicosa-5,8,10,14-tetraenoate.","definition_xrefs":["RHEA:10428","EC:1.13.11.31"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen","termid":"GO:0016702"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0003674","GO:0016491","GO:0003824"],"is_obsolete":false,"name":"arachidonate 12(S)-lipoxygenase activity","secondary_identifiers":["Reactome:R-HSA-2161948","Reactome:R-HSA-2161964","Reactome:R-HSA-9026007","MetaCyc:ARACHIDONATE-12-LIPOXYGENASE-RXN","Reactome:R-HSA-2161950","Reactome:R-HSA-9026006","Reactome:R-HSA-9025957","Reactome:R-HSA-9024983","KEGG_REACTION:R01596"],"synonyms":[{"name":"12-lipoxygenase activity","type":"related"},{"name":"12Delta-lipoxygenase activity","type":"related"},{"name":"12S-lipoxygenase activity","type":"related"},{"name":"C-12 lipoxygenase activity","type":"related"},{"name":"LTA4 synthase activity","type":"related"},{"name":"arachidonate:oxygen 12-oxidoreductase activity","type":"related"},{"name":"delta12-lipoxygenase activity","type":"related"},{"name":"leukotriene A4 synthase","type":"broad"}],"termid":"GO:0004052"}


id: FYPO:0007102
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A physical cellular phenotype in which a cell contains more than one meiotic spindle per nucleus during the second meiotic nuclear division.","definition_xrefs":["PomBase:mah","PMID:22292001"],"direct_ancestors":[{"relation_name":"is_a","term_name":"multiple meiotic spindles","termid":"FYPO:0006390"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0002399"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000120"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0000054"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0001985","FYPO:0000120","FYPO:0000054","FYPO:0000002","FYPO:0002399"],"is_obsolete":false,"name":"multiple spindles during meiosis II","synonyms":[{"name":"additional spindles present during meiosis II","type":"exact"},{"name":"extra spindles during meiosis II","type":"exact"},{"name":"increased number of spindles during meiosis II","type":"exact"},{"name":"multiple meiotic spindles during meiosis II","type":"exact"},{"name":"spindles present in greater numbers during meiosis II","type":"exact"}],"termid":"FYPO:0007102"}


id: PR:P31397
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- map3 gene.","definition_xrefs":["UniProtKB:P31397","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pheromone M-factor receptor (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC3F10.10c","synonyms":[{"name":"Spom972h-map3","type":"exact"}],"termid":"PR:P31397"}


id: PBO:0047425
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Fc alpha receptor","termid":"PBO:0047425"}


id: PATO:0001529
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A spatiotemporal quality inhering in a cell.","definition_xrefs":["PATOC:GVG"],"direct_ancestors":[{"relation_name":"is_a","term_name":"process quality","termid":"PATO:0001236"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cellular spatiotemporal quality","termid":"PATO:0001529"}


id: GO:0090133
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which the population of cells that make up a mesendoderm undergo directed movement. The mesendoderm is the epithelial tissue that gives rise to both mesoderm and endoderm.","definition_xrefs":["GOC:ascb_2009","GOC:dph","GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"epithelium migration","termid":"GO:0090132"},{"relation_name":"part_of","term_name":"gastrulation","termid":"GO:0007369"},{"relation_name":"part_of","term_name":"mesendoderm development","termid":"GO:0048382"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"mesendoderm migration","termid":"GO:0090133"}


id: PBO:0077376
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transmembrane protein 117","termid":"PBO:0077376"}


id: GO:0050203
data:
  {"annotated_genes":["SJAG_00947"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[112442],"is_not":false,"summary":null,"term":"GO:0050203"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: ATP + CoA + oxalate = AMP + diphosphate + H+ + oxalyl-CoA.","definition_xrefs":["RHEA:18293"],"direct_ancestors":[{"relation_name":"is_a","term_name":"CoA-ligase activity","termid":"GO:0016405"},{"relation_name":"is_a","term_name":"acid-thiol ligase activity","termid":"GO:0016878"}],"gene_count":1,"genes_by_uniquename":{"SJAG_00947":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016874"}],"interesting_parent_ids":["GO:0003824","GO:0016874","GO:0003674"],"is_obsolete":false,"name":"oxalate-CoA ligase activity","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["EC:6.2.1.8","KEGG_REACTION:R01558","MetaCyc:OXALATE--COA-LIGASE-RXN"],"synonyms":[{"name":"oxalate:CoA ligase (AMP-forming)","type":"related"},{"name":"oxalyl coenzyme A synthetase activity","type":"related"},{"name":"oxalyl-CoA synthetase activity","type":"related"}],"termid":"GO:0050203","terms_by_termid":{"GO:0050203":null}}


