# terms

id: PBO:0014272
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"diphthamide synthetase Dph6 (predicted)","termid":"PBO:0014272"}


id: PR:O94552
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A fumarate hydratase, mitochondrial that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PANTHER:PTHR11444:SF1","PRO:DNx","OMA:SCHPO04899"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"fumarate hydratase, mitochondrial (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC18.18c","secondary_identifiers":["UniProtKB:O94552"],"synonyms":[{"name":"Fumarase (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-FH","type":"exact"}],"termid":"PR:O94552"}


id: GO:2000256
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of male germ cell proliferation.","definition_xrefs":["GOC:obol"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of germ cell proliferation","termid":"GO:1905938"},{"relation_name":"is_a","term_name":"regulation of male germ cell proliferation","termid":"GO:2000254"},{"relation_name":"positively_regulates","term_name":"male germ cell proliferation","termid":"GO:0002176"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of male germ cell proliferation","termid":"GO:2000256"}


id: PBO:0063141
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"prostate and testis expressed 1","termid":"PBO:0063141"}


id: PBO:0024832
data:
  {"annotation_feature_type":"gene","cv_name":"name_description","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MYosin II of Pombe","termid":"PBO:0024832"}


id: PBO:0043374
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"clustered mitochondria homolog pseudogene 4","termid":"PBO:0043374"}


id: GO:0017105
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: an 11,12-saturated fatty acyl-CoA + 2 Fe(II)-[cytochrome b5] + 2 H+ + O2 = an (11Z)-delta-11-fatty acyl-CoA + 2 Fe(III)-[cytochrome b5] + 2 H2O.","definition_xrefs":["RHEA:25852","PMID:15063718","PMID:15544945"],"direct_ancestors":[{"relation_name":"is_a","term_name":"acyl-CoA desaturase activity","termid":"GO:0016215"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0016491","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"acyl-CoA delta11-(Z)-desaturase activity","secondary_identifiers":["GO:0050601","MetaCyc:1.14.99.32-RXN","EC:1.14.19.5"],"synonyms":[{"name":"Z/E11-desaturase","type":"broad"},{"name":"acyl-CoA D11-desaturase activity","type":"exact"},{"name":"acyl-CoA delta(11)-desaturase activity","type":"exact"},{"name":"acyl-CoA delta11-desaturase activity","type":"broad"},{"name":"delta(11) desaturase","type":"broad"},{"name":"delta(11)-fatty-acid desaturase","type":"broad"},{"name":"delta(11)-palmitoyl-CoA desaturase","type":"narrow"},{"name":"fatty acid delta(11)-desaturase","type":"broad"},{"name":"myristoyl-CoA 11-(Z) desaturase activity","type":"narrow"}],"termid":"GO:0017105"}


id: FYPO:0005522
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which RNAs transcribed in the forward direction from the centromere outer repeat region are present at greater levels than normal.","definition_xrefs":["PMID:22990236","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased centromeric outer repeat transcript level","termid":"FYPO:0000220"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0006551"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0001985","FYPO:0006551","FYPO:0000002","FYPO:0001320"],"is_obsolete":false,"name":"increased forward centromeric outer repeat transcript level","synonyms":[{"name":"increased accumulation of forward centromeric outer repeat transcripts","type":"related"},{"name":"increased accumulation of forward centromeric outer repeat transcripts during vegetative growth","type":"related"},{"name":"increased accumulation of forward non-coding outer repeat transcripts","type":"exact"},{"name":"increased forward centromere outer repeat transcript level","type":"exact"},{"name":"increased forward centromeric outer repeat transcript level during mitotic cell cycle","type":"related"},{"name":"increased forward centromeric outer repeat transcript level during vegetative growth","type":"exact"},{"name":"increased forward centromeric outer repeat-derived transcript level","type":"exact"},{"name":"increased level of forward centromeric outer repeat transcripts","type":"exact"}],"termid":"FYPO:0005522"}


id: PR:Q9C118
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPAC1687.23c gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q9C118"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized protein C1687.23c (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC1687.23c","synonyms":[{"name":"Spom972h-SPAC1687.23c","type":"exact"}],"termid":"PR:Q9C118"}


id: GO:0044627
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. A process that modulates the frequency, rate or extent of the classical pathway of complement activation, in a different organism.","definition_xrefs":["PMID:20837040","GOC:jl"],"gene_count":0,"genotype_count":0,"name":"obsolete modulation of complement activation, classical pathway in another organism (obsolete GO:0044627)","synonyms":[{"name":"modulation of complement activation, classical pathway in other organism","type":"exact"},{"name":"regulation of complement activation, classical pathway in other organism","type":"exact"}],"termid":"GO:0044627"}


id: PBO:0042782
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"centrosomal protein 120","termid":"PBO:0042782"}


id: PBO:0077667
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TNF receptor superfamily member 13B","termid":"PBO:0077667"}


id: PBO:0081152
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ZFP91-CNTF readthrough (NMD candidate)","termid":"PBO:0081152"}


id: PBO:0041769
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"calpain 9","termid":"PBO:0041769"}


id: GO:1900722
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of protein adenylylation.","definition_xrefs":["GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of protein modification process","termid":"GO:0031399"},{"relation_name":"regulates","term_name":"protein adenylylation","termid":"GO:0018117"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of protein adenylylation","synonyms":[{"name":"regulation of protein AMPylation","type":"exact"},{"name":"regulation of protein adenylation","type":"exact"},{"name":"regulation of protein amino acid adenylylation","type":"exact"}],"termid":"GO:1900722"}


id: PBO:0011517
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ATPase, Arb family ABCF1-like (predicted)","termid":"PBO:0011517"}


id: GO:1901661
data:
  {"annotated_genes":["SJAG_01063","SJAG_00721","SJAG_01866","SJAG_06603","SJAG_04000","SJAG_01820","SJAG_01865","SJAG_01668","SJAG_04642","SJAG_00459","SJAG_00933","SJAG_01672","SJAG_01043","SJAG_01911","SJAG_04568","SJAG_04223"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[110369],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0010236"},{"annotations":[85054],"is_not":false,"rel_names":["positively_regulates","regulates"],"summary":null,"term":"GO:1904775"},{"annotations":[111514,85504,106144,73403,115952,115953,99231,111872,73591,73555,72586,83515,77379],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006744"},{"annotations":[104599],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0032194"},{"annotations":[115951],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006743"},{"annotations":[112548],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1901006"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways involving quinone.","definition_xrefs":["GOC:go_curators","GOC:pr","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular ketone metabolic process","termid":"GO:0042180"}],"gene_count":16,"genes_by_uniquename":{"SJAG_00459":null,"SJAG_00721":null,"SJAG_00933":null,"SJAG_01043":null,"SJAG_01063":null,"SJAG_01668":null,"SJAG_01672":null,"SJAG_01820":null,"SJAG_01865":null,"SJAG_01866":null,"SJAG_01911":null,"SJAG_04000":null,"SJAG_04223":null,"SJAG_04568":null,"SJAG_04642":null,"SJAG_06603":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0044281","GO:0008150"],"is_obsolete":false,"name":"quinone metabolic process","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null,"PMID:29191091":null},"secondary_identifiers":["GO:0042375"],"synonyms":[{"name":"quinone cofactor metabolic process","type":"related"},{"name":"quinone cofactor metabolism","type":"related"},{"name":"quinone metabolism","type":"exact"}],"termid":"GO:1901661","terms_by_termid":{"GO:0006743":null,"GO:0006744":null,"GO:0010236":null,"GO:0032194":null,"GO:1901006":null,"GO:1904775":null}}


id: PBO:0091210
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"large subunit ribosomal RNA","termid":"PBO:0091210"}


id: PATO:0000163
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0000163 relative rate (obsolete PATO:0000163)","termid":"PATO:0000163"}


id: PBO:0030588
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_cellular_aspartate_level","termid":"PBO:0030588"}


id: PBO:0065027
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"peroxiredoxin 4 pseudogene 1","termid":"PBO:0065027"}


id: GO:0050331
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: ATP + thiamin diphosphate = ADP + thiamin triphosphate.","definition_xrefs":["EC:2.7.4.15","MetaCyc:THIAMIN-DIPHOSPHATE-KINASE-RXN"],"direct_ancestors":[{"relation_name":"is_a","term_name":"kinase activity","termid":"GO:0016301"},{"relation_name":"is_a","term_name":"phosphotransferase activity, phosphate group as acceptor","termid":"GO:0016776"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016301"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0016301","GO:0003824","GO:0016740"],"is_obsolete":false,"name":"thiamine-diphosphate kinase activity","secondary_identifiers":["RHEA:11240","Reactome:R-HSA-997381"],"synonyms":[{"name":"ATP:thiamin-diphosphate phosphotransferase activity","type":"related"},{"name":"ATP:thiamine-diphosphate phosphotransferase activity","type":"related"},{"name":"TDP kinase activity","type":"related"},{"name":"protein bound thiamin diphosphate:ATP phosphoryltransferase activity","type":"related"},{"name":"thiamin diphosphate kinase activity","type":"exact"},{"name":"thiamin diphosphate phosphotransferase activity","type":"related"},{"name":"thiamin pyrophosphate kinase activity","type":"related"},{"name":"thiamin-diphosphate kinase activity","type":"exact"},{"name":"thiamine diphosphate kinase activity","type":"related"}],"termid":"GO:0050331"}


id: PBO:0004766
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ESCRT II complex subunit Vps36","termid":"PBO:0004766"}


id: GO:0043320
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The regulated exocytosis of secretory granules containing preformed mediators such as perforin and granzymes by a natural killer cell.","definition_xrefs":["ISBN:0781735149"],"direct_ancestors":[{"relation_name":"is_a","term_name":"leukocyte degranulation","termid":"GO:0043299"},{"relation_name":"part_of","term_name":"natural killer cell activation involved in immune response","termid":"GO:0002323"},{"relation_name":"part_of","term_name":"natural killer cell mediated cytotoxicity","termid":"GO:0042267"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0016192"}],"interesting_parent_ids":["GO:0006810","GO:0051179","GO:0008150","GO:0016192"],"is_obsolete":false,"name":"natural killer cell degranulation","synonyms":[{"name":"NK cell degranulation","type":"exact"},{"name":"NK cell granule exocytosis","type":"exact"},{"name":"natural killer cell granule exocytosis","type":"exact"}],"termid":"GO:0043320"}


id: GO:0033163
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The lipid bilayer surrounding a microneme.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"bounding membrane of organelle","termid":"GO:0098588"},{"relation_name":"part_of","term_name":"microneme","termid":"GO:0020009"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"microneme membrane","termid":"GO:0033163"}


id: PBO:0058157
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 4452","termid":"PBO:0058157"}


id: PBO:0046630
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"endogenous retrovirus group W member 11","termid":"PBO:0046630"}


id: GO:0070161
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A cell junction that mechanically attaches a cell (and its cytoskeleton) to neighboring cells or to the extracellular matrix.","definition_xrefs":["ISBN:0815332181"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell junction","termid":"GO:0030054"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"anchoring junction","synonyms":[{"name":"anchoring cell junction","type":"exact"}],"termid":"GO:0070161"}


id: PBO:0067940
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 5S ribosomal pseudogene 242","termid":"PBO:0067940"}


id: PBO:0078820
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-Pro (anticodon AGG) 2-3","termid":"PBO:0078820"}


id: GO:0061615
data:
  {"annotated_genes":["SJAG_03903","SJAG_02135","SJAG_00027","SJAG_02009","SJAG_00461","SJAG_04192","SJAG_02796","SJAG_04334","SJAG_00605","SJAG_03828","SJAG_03660","SJAG_00839","SJAG_02945","SJAG_03373","SJAG_04495","SJAG_06622","SJAG_02369","SJAG_06621","SJAG_02107","SJAG_01310"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[105848,113049,76800,101804,101805,99953,90589,94427,105845,105847,105850,101806,94146,102191,105846,105849,99680,102192,105851,91089],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0061621"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of a monosaccharide into pyruvate, occurring through a fructose-6-phosphate intermediate, with the concomitant production of ATP and NADH.","definition_xrefs":["ISBN:0879010479","GOC:dph","ISBN:0201090910"],"direct_ancestors":[{"relation_name":"is_a","term_name":"glycolytic process","termid":"GO:0006096"}],"gene_count":20,"genes_by_uniquename":{"SJAG_00027":null,"SJAG_00461":null,"SJAG_00605":null,"SJAG_00839":null,"SJAG_01310":null,"SJAG_02009":null,"SJAG_02107":null,"SJAG_02135":null,"SJAG_02369":null,"SJAG_02796":null,"SJAG_02945":null,"SJAG_03373":null,"SJAG_03660":null,"SJAG_03828":null,"SJAG_03903":null,"SJAG_04192":null,"SJAG_04334":null,"SJAG_04495":null,"SJAG_06621":null,"SJAG_06622":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0055086"},{"rel_name":"is_a","termid":"GO:0044248"},{"rel_name":"is_a","termid":"GO:0006091"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0005975"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0044281","GO:0055086","GO:0006091","GO:0005975","GO:0044248","GO:0008150"],"is_obsolete":false,"name":"glycolytic process through fructose-6-phosphate","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"secondary_identifiers":["MetaCyc:PWY-5484"],"synonyms":[{"name":"glycolysis through fructose-6-phosphate","type":"exact"}],"termid":"GO:0061615","terms_by_termid":{"GO:0061621":null}}


id: GO:0106319
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: (4R)-limonene + NADH + H+ + O2 = NAD+ + H2O + (4R)-limonene-1,2-epoxide.","definition_xrefs":["RHEA:26093"],"direct_ancestors":[{"relation_name":"is_a","term_name":"(R)-limonene 1,2-monooxygenase activity","termid":"GO:0018635"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0016491","GO:0003824"],"is_obsolete":false,"name":"(R)-limonene 1,2-monooxygenase NADH activity","secondary_identifiers":["EC:1.14.13.107"],"termid":"GO:0106319"}


id: PBO:0038529
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"abhydrolase domain containing 3, phospholipase","termid":"PBO:0038529"}


id: GO:0140684
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the removal of a methyl group from a tri or a dimethyl-lysine residue at position 9 of the histone H3 protein. This is a dioxygenase reaction that is dependent on Fe(II) and 2-oxoglutarate.","definition_xrefs":["PMID:20208542","PMID:20531378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"2-oxoglutarate-dependent dioxygenase activity","termid":"GO:0016706"},{"relation_name":"is_a","term_name":"histone H3K9 demethylase activity","termid":"GO:0032454"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0032452"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0140096"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016491","GO:0003674","GO:0032452","GO:0140096","GO:0003824"],"is_obsolete":false,"name":"histone H3K9me2/H3K9me3 demethylase activity","secondary_identifiers":["RHEA:60200","EC:1.14.11.66"],"synonyms":[{"name":"histone H3-tri/dimethyl-lysine-9 demethylase activity","type":"exact"},{"name":"histone H3K9me2 demethylase activity","type":"broad"},{"name":"histone H3K9me3 demethylase activity","type":"related"}],"termid":"GO:0140684"}


id: PBO:0087560
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Subunit of signal peptidase complex; complex catalyzes cleavage of N-terminal signal sequences of proteins targeted to the secretory pathway; inhibits SRP-independent translocation into the ER with STE24; homologous to mammalian SPC25; other members of the complex are Spc1p, Spc1p, and Sec11p","termid":"PBO:0087560"}


id: PBO:0048486
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"germinal center associated signaling and motility like","termid":"PBO:0048486"}


id: GO:1903528
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of dCDP biosynthetic process.","definition_xrefs":["GO_REF:0000058","GOC:TermGenie","PMID:16317005"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of pyrimidine nucleotide biosynthetic process","termid":"GO:1900397"},{"relation_name":"regulates","term_name":"dCDP biosynthetic process","termid":"GO:0006240"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0044281"},{"rel_name":"regulates","termid":"GO:0055086"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0044281","GO:0055086","GO:0008150"],"is_obsolete":false,"name":"regulation of dCDP biosynthetic process","synonyms":[{"name":"regulation of dCDP anabolism","type":"exact"},{"name":"regulation of dCDP biosynthesis","type":"exact"},{"name":"regulation of dCDP formation","type":"exact"},{"name":"regulation of dCDP synthesis","type":"exact"}],"termid":"GO:1903528"}


id: PBO:0040069
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"arrestin 3","termid":"PBO:0040069"}


id: PBO:0028055
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_chromatin_silencing_at_subtelomere","termid":"PBO:0028055"}


id: PBO:0091040
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA-binding protein, G-patch type, human GPANK1 ortholog","termid":"PBO:0091040"}


id: PBO:0005404
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial morphology protein (predicted)","termid":"PBO:0005404"}


id: PBO:0003644
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"alpha-1,3-glucan synthase Mok12","termid":"PBO:0003644"}


id: GO:0140440
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the transfer of an oleoyl (systematic name, (9Z)-octadecenoyl) group to a sulfur atom on the cysteine of a protein molecule, in the reaction: (9Z)-octadecenoyl-CoA + L-cysteinyl-[protein] = CoA + S-(9Z-octadecenoyl)-L-cysteinyl-[protein].","definition_xrefs":["RHEA:59744","PMID:22247542"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein-cysteine S-acyltransferase activity","termid":"GO:0019707"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0016746"},{"rel_name":"is_a","termid":"GO:0140096"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0140096","GO:0016740","GO:0003824","GO:0016746"],"is_obsolete":false,"name":"protein-cysteine S-oleoyltransferase activity","termid":"GO:0140440"}


id: FYPO:0000865
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the trimethylation of lysine at position 9 of histone H3 in centromere inner repeat regions is abnormal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal histone H3-K9 trimethylation at centromere during vegetative growth","termid":"FYPO:0000864"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0002274"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0002494"}],"interesting_parent_ids":["FYPO:0002494","FYPO:0001985","FYPO:0002274","FYPO:0005447","FYPO:0000002","FYPO:0001320"],"is_obsolete":false,"name":"abnormal histone H3-K9 trimethylation at centromere inner repeat during vegetative growth","synonyms":[{"name":"abnormal histone H3 K9 trimethylation at centromere inner repeat during vegetative growth","type":"exact"},{"name":"abnormal histone H3-K9 trimethylation at centromere imr during vegetative growth","type":"exact"},{"name":"abnormal histone H3-K9 trimethylation at centromere inner repeat during mitotic cell cycle","type":"related"},{"name":"abnormal histone H3-K9 trimethylation at centromere inner repeat region during vegetative growth","type":"exact"},{"name":"abnormal histone H3K9 trimethylation at centromere inner repeat during vegetative growth","type":"exact"},{"name":"abnormal histone H3K9me3 at centromere inner repeat during vegetative growth","type":"exact"},{"name":"abnormal histone lysine H3 K9 trimethylation at centromere inner repeat during vegetative growth","type":"exact"}],"termid":"FYPO:0000865"}


id: GO:0031487
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A myosin complex containing one or more class XVII myosin heavy chains and associated light chains.","direct_ancestors":[{"relation_name":"is_a","term_name":"unconventional myosin complex","termid":"GO:0016461"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0015629"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0015629","GO:0005575","GO:0032991"],"is_obsolete":false,"name":"myosin XVII complex","termid":"GO:0031487"}


id: RO:0002491
data:
  {"annotation_feature_type":"gene","cv_name":"relationship","definition":"x existence starts and ends during y if and only if the start of x is part of y and the end of x is part of y. Formally: x existence starts and ends during y iff α(x) >= α(y) & α(x) <= ω(y) & ω(x) <= ω(y) & ω(x) >= α(y)","direct_ancestors":[{"relation_name":"is_a","term_name":"existence_starts_during","termid":"RO:0002488"},{"relation_name":"is_a","term_name":"existence_ends_during","termid":"RO:0002492"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"existence_starts_and_ends_during","termid":"RO:0002491"}


id: FYPO:0006369
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the dimethylation of lysine at position 9 of histone H3 in one or more heterochromatin domains occurs to a greater extent than normal.","definition_xrefs":["PMID:29214404","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased histone H3-K9 dimethylation during vegetative growth","termid":"FYPO:0000873"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0002494"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0002274"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0002274","FYPO:0005447","FYPO:0002494","FYPO:0001320","FYPO:0000002","FYPO:0001985"],"is_obsolete":false,"name":"increased histone H3-K9 dimethylation at heterochromatin domain during vegetative growth","synonyms":[{"name":"increased histone H3 K9 dimethylation at heterochromatin domain during vegetative growth","type":"exact"},{"name":"increased histone H3-K9 dimethylation at heterochromatin domain during mitotic cell cycle","type":"related"},{"name":"increased histone H3K9 dimethylation at heterochromatin domain during vegetative growth","type":"exact"},{"name":"increased histone H3K9me2 at heterochromatin domain during vegetative growth","type":"exact"},{"name":"increased histone lysine H3 K9 dimethylation at heterochromatin domain during vegetative growth","type":"exact"}],"termid":"FYPO:0006369"}


id: MOD:01959
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts three L-cysteine residues, an L-glutamic acid and a four-iron four-sulfur cluster to tris-L-cysteinyl L-glutamato tetrairon tetrasulfide.","definition_xrefs":["RESID:AA0604","PubMed:21167158"],"direct_ancestors":[{"relation_name":"is_a","term_name":"iron-sulfur cluster containing modification","termid":"MOD:00739"},{"relation_name":"is_a","term_name":"metal or metal cluster coordinated L-cysteine residue","termid":"MOD:02067"},{"relation_name":"is_a","term_name":"metal or metal cluster coordinated L-glutamic acid residue","termid":"MOD:02068"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tris-L-cysteinyl L-glutamato tetrairon tetrasulfide","synonyms":[{"name":"tris-L-cysteinyl L-glutamato tetrairon tetrasulfide","type":"exact"},{"name":"tris-mu3-sulfido-tris(cysteinato)-1kappaS,2kappaS,3kappaS-glutamato-4kappaO(5),4kappaO(5')-tetrairon","type":"exact"}],"termid":"MOD:01959"}


id: GO:0097608
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A motile cilium found in dinoflagellates. It coils around the cell and provides the forward thrust for motility. It is often contained in a furrow called the cingulum, and emerges from a flagellar pore located in the cingulum.","definition_xrefs":["GOC:at","Wikipedia:Dinoflagellate#Morphology","ISBN:0632009152"],"direct_ancestors":[{"relation_name":"is_a","term_name":"9+2 motile cilium","termid":"GO:0097729"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"transverse flagellum","synonyms":[{"name":"transverse cilium","type":"exact"}],"termid":"GO:0097608"}


id: PBO:0062851
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"OTOA pseudogene 1","termid":"PBO:0062851"}


id: GO:0044515
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process that begins with venom being forced into an organism by the bite or sting of another organism, and ends with the resultant positive regulation of glucagon-like peptide receptor 1 activity in of the bitten organism.","definition_xrefs":["GOC:fj","PMID:8405712","GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"envenomation resulting in modulation of glucagon-like peptide receptor 1 activity in another organism","termid":"GO:0044512"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"envenomation resulting in positive regulation of glucagon-like peptide receptor 1 activity in another organism","synonyms":[{"name":"envenomation resulting in positive regulation of glucagon-like peptide receptor 1 activity in other organism","type":"exact"}],"termid":"GO:0044515"}


id: PBO:0067080
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 113, pseudogene","termid":"PBO:0067080"}


id: PBO:0091236
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Con-6 family conserved fungal protein","termid":"PBO:0091236"}


id: PBO:0045283
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dynamin 1 pseudogene 34","termid":"PBO:0045283"}


id: PBO:0030199
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-resistance_to_cytochalasin_B","termid":"PBO:0030199"}


id: PBO:0055194
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2619","termid":"PBO:0055194"}


id: PBO:0078441
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"T cell receptor gamma constant 1","termid":"PBO:0078441"}


id: PBO:0065977
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Rap associating with DIL domain","termid":"PBO:0065977"}


id: PBO:0055246
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2673","termid":"PBO:0055246"}


id: PBO:0082716
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Component of the NuA4 histone acetyltransferase complex; acts as a platform for assembly of NuA4 subunits into the native complex; required for initiation of pre-meiotic DNA replication, likely due to its requirement for expression of IME1","termid":"PBO:0082716"}


id: PBO:0055546
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2982","termid":"PBO:0055546"}


id: GO:0008463
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: N-formyl-L-methionine + H2O = L-methionine + formate.","definition_xrefs":["EC:3.5.1.31","RHEA:17781"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides","termid":"GO:0016811"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016810"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016810","GO:0016787","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"formylmethionine deformylase activity","secondary_identifiers":["KEGG_REACTION:R00653","MetaCyc:FORMYLMETHIONINE-DEFORMYLASE-RXN"],"synonyms":[{"name":"N-formyl-L-methionine amidohydrolase activity","type":"related"}],"termid":"GO:0008463"}


id: PR:Q9P7N3
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A vacuolar protein sorting-associated protein 41 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO00654","PANTHER:PTHR12616:SF0","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"vacuolar protein sorting-associated protein 41 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAP27G11.05c","secondary_identifiers":["UniProtKB:Q9P7N3"],"synonyms":[{"name":"Spom972h-VPS41","type":"exact"}],"termid":"PR:Q9P7N3"}


id: GO:0044498
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process that begins with venom being forced into an organism by the bite or sting of another organism, and ends with the resultant modulation of the force with which blood travels through the circulatory system of the bitten/stung organism.","definition_xrefs":["PMID:19837656","GOC:jl","GOC:fj"],"direct_ancestors":[{"relation_name":"is_a","term_name":"envenomation resulting in modulation of process in another organism","termid":"GO:0035738"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"envenomation resulting in modulation of blood pressure in another organism","synonyms":[{"name":"envenomation resulting in modulation of blood pressure in other organism","type":"exact"},{"name":"envenomation resulting in regulation of blood pressure in other organism","type":"exact"}],"termid":"GO:0044498"}


id: PBO:0050080
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"high mobility group AT-hook 1","termid":"PBO:0050080"}


id: GO:0052899
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: H2O + N(1),N(12)-diacetylspermine + O2 = 3-acetamidopropanal + H2O2 + N(1)-acetylspermidine.","definition_xrefs":["RHEA:25868"],"direct_ancestors":[{"relation_name":"is_a","term_name":"polyamine oxidase activity","termid":"GO:0046592"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016491"],"is_obsolete":false,"name":"N(1),N(12)-diacetylspermine:oxygen oxidoreductase (3-acetamidopropanal-forming) activity","secondary_identifiers":["EC:1.5.3.13","MetaCyc:RXN-10460"],"synonyms":[{"name":"polyamine oxidase activity","type":"broad"},{"name":"N(1)-acetylpolyamine oxidase activity","type":"broad"}],"termid":"GO:0052899"}


id: PBO:0047026
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"family with sequence similarity 91 member A1","termid":"PBO:0047026"}


id: PBO:0064819
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protein phosphatase 1 regulatory subunit 3B","termid":"PBO:0064819"}


id: FYPO:0002995
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A regulation phenotype observed in the vegetative growth phase of the life cycle in which regulation of DNA replication is normal (i.e. indistinguishable from wild type).","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal cellular process during vegetative growth","termid":"FYPO:0001319"},{"relation_name":"is_a","term_name":"regulation phenotype during vegetative growth","termid":"FYPO:0001334"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001312"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000257"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001312","FYPO:0001320","FYPO:0000257"],"is_obsolete":false,"name":"normal regulation of DNA replication","synonyms":[{"name":"normal regulation of DNA replication during mitotic cell cycle","type":"exact"},{"name":"normal regulation of DNA replication during vegetative growth","type":"exact"},{"name":"normal regulation of nuclear cell cycle DNA replication","type":"exact"}],"termid":"FYPO:0002995"}


id: GO:1902499
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of protein autoubiquitination.","definition_xrefs":["GOC:TermGenie","GOC:rb","PMID:24069405"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of protein ubiquitination","termid":"GO:0031398"},{"relation_name":"is_a","term_name":"regulation of protein autoubiquitination","termid":"GO:1902498"},{"relation_name":"positively_regulates","term_name":"protein autoubiquitination","termid":"GO:0051865"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0070647"},{"rel_name":"positively_regulates","termid":"GO:0070647"}],"interesting_parent_ids":["GO:0070647","GO:0008150"],"is_obsolete":false,"name":"positive regulation of protein autoubiquitination","synonyms":[{"name":"activation of protein auto-ubiquitination","type":"narrow"},{"name":"activation of protein auto-ubiquitinylation","type":"narrow"},{"name":"activation of protein autoubiquitination","type":"narrow"},{"name":"activation of protein autoubiquitinylation","type":"narrow"},{"name":"activation of protein self-ubiquitination","type":"narrow"},{"name":"activation of protein self-ubiquitinylation","type":"narrow"},{"name":"positive regulation of protein auto-ubiquitination","type":"exact"},{"name":"positive regulation of protein auto-ubiquitinylation","type":"exact"},{"name":"positive regulation of protein autoubiquitinylation","type":"exact"},{"name":"positive regulation of protein self-ubiquitination","type":"exact"},{"name":"positive regulation of protein self-ubiquitinylation","type":"exact"},{"name":"up regulation of protein auto-ubiquitination","type":"exact"},{"name":"up regulation of protein auto-ubiquitinylation","type":"exact"},{"name":"up regulation of protein autoubiquitination","type":"exact"},{"name":"up regulation of protein autoubiquitinylation","type":"exact"},{"name":"up regulation of protein self-ubiquitination","type":"exact"},{"name":"up regulation of protein self-ubiquitinylation","type":"exact"},{"name":"up-regulation of protein auto-ubiquitination","type":"exact"},{"name":"up-regulation of protein auto-ubiquitinylation","type":"exact"},{"name":"up-regulation of protein autoubiquitination","type":"exact"},{"name":"up-regulation of protein autoubiquitinylation","type":"exact"},{"name":"up-regulation of protein self-ubiquitination","type":"exact"},{"name":"up-regulation of protein self-ubiquitinylation","type":"exact"},{"name":"upregulation of protein auto-ubiquitination","type":"exact"},{"name":"upregulation of protein auto-ubiquitinylation","type":"exact"},{"name":"upregulation of protein autoubiquitination","type":"exact"},{"name":"upregulation of protein autoubiquitinylation","type":"exact"},{"name":"upregulation of protein self-ubiquitination","type":"exact"},{"name":"upregulation of protein self-ubiquitinylation","type":"exact"}],"termid":"GO:1902499"}


id: GO:0043558
data:
  {"annotated_genes":["SJAG_02592","SJAG_00169","SJAG_04873","SJAG_00786","SJAG_04383","SJAG_00690","SJAG_03869","SJAG_01942"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[95526,72198,88841,90419,70093,112283],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1990625"},{"annotations":[91305,100282],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1990611"}]},"cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of translation initiation, as a result of a stimulus indicating the organism is under stress.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of translational initiation","termid":"GO:0006446"},{"relation_name":"is_a","term_name":"regulation of translation in response to stress","termid":"GO:0043555"}],"gene_count":8,"genes_by_uniquename":{"SJAG_00169":null,"SJAG_00690":null,"SJAG_00786":null,"SJAG_01942":null,"SJAG_02592":null,"SJAG_03869":null,"SJAG_04383":null,"SJAG_04873":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0010467","GO:0008150"],"is_obsolete":false,"name":"regulation of translational initiation in response to stress","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"synonyms":[{"name":"regulation of translation initiation in response to stress","type":"exact"}],"termid":"GO:0043558","terms_by_termid":{"GO:1990611":null,"GO:1990625":null}}


id: FYPO:0001712
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of coenzyme Q10 measured in a cell is too low to detect.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"substance absent from cell during vegetative growth","termid":"FYPO:0001208"},{"relation_name":"is_a","term_name":"decreased cellular coenzyme Q10 level","termid":"FYPO:0006978"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000002","FYPO:0001320"],"is_obsolete":false,"name":"coenzyme Q10 absent from cell","synonyms":[{"name":"UQ-10 absent from cell","type":"exact"},{"name":"coenzyme Q10 absent from cell during mitotic cell cycle","type":"related"},{"name":"coenzyme Q10 absent from cell during vegetative growth","type":"exact"},{"name":"ubiquinone 10 absent from cell","type":"exact"}],"termid":"FYPO:0001712"}


id: PBO:0045905
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"EF-hand calcium binding domain 3","termid":"PBO:0045905"}


id: GO:1990967
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The directed movement of a toxin into, out of or within a cell, or between cells where two or more organisms of the same or different species are involved.","definition_xrefs":["PMID:18191792","GOC:bf","GOC:PARL","PMID:22042847"],"gene_count":0,"genotype_count":0,"name":"obsolete multi-organism toxin transport (obsolete GO:1990967)","synonyms":[{"name":"typhoid toxin transport","type":"narrow"}],"termid":"GO:1990967"}


id: PBO:0004707
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ubiquitin activating enzyme E1","termid":"PBO:0004707"}


id: PBO:0059097
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mortality factor 4 like 1 pseudogene 3","termid":"PBO:0059097"}


id: PBO:0050035
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"major histocompatibility complex, class II, DR beta 3","termid":"PBO:0050035"}


id: PBO:0016091
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"phosducin family protein Plp2 (predicted)","termid":"PBO:0016091"}


id: PBO:0075129
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nuclear ribonucleoprotein U4/U6.U5 subunit 27","termid":"PBO:0075129"}


id: GO:0046232
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of carbazole, a heterocyclic aromatic compound containing a dibenzopyrrole system that is produced during coal gasification and is present in cigarette smoke. Coal tar produced at high temperature contains an average of 1.5% carbazole. It is used widely in synthesis of dyes, pharmaceuticals, and plastics and is a suspected carcinogen.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"carbazole metabolic process","termid":"GO:0018884"},{"relation_name":"is_a","term_name":"aromatic compound catabolic process","termid":"GO:0019439"},{"relation_name":"is_a","term_name":"xenobiotic catabolic process","termid":"GO:0042178"},{"relation_name":"is_a","term_name":"cellular nitrogen compound catabolic process","termid":"GO:0044270"},{"relation_name":"is_a","term_name":"heterocycle catabolic process","termid":"GO:0046700"},{"relation_name":"is_a","term_name":"organic cyclic compound catabolic process","termid":"GO:1901361"},{"relation_name":"is_a","term_name":"organonitrogen compound catabolic process","termid":"GO:1901565"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044248"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0044248","GO:0008150"],"is_obsolete":false,"name":"carbazole catabolic process","synonyms":[{"name":"carbazole breakdown","type":"exact"},{"name":"carbazole catabolism","type":"exact"},{"name":"carbazole degradation","type":"exact"}],"termid":"GO:0046232"}


id: PBO:0066900
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RN7SK pseudogene 200","termid":"PBO:0066900"}


id: PBO:0083966
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"GID Complex subunit, serves as adaptor for regulatory subunit Vid24p; protein involved in proteasome-dependent catabolite degradation of fructose-1,6-bisphosphatase (FBPase); localized to the nucleus and the cytoplasm","termid":"PBO:0083966"}


id: GO:0007121
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process of defining subsequent sites of bud emergence such that budding takes place at alternating poles of a budding cell.","definition_xrefs":["GOC:clt"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular bud site selection","termid":"GO:0000282"},{"relation_name":"is_a","term_name":"cell budding","termid":"GO:0007114"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0007163"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0007049"},{"rel_name":"part_of","termid":"GO:0000281"}],"interesting_parent_ids":["GO:0000281","GO:0007163","GO:0008150","GO:0007049"],"is_obsolete":false,"name":"bipolar cellular bud site selection","synonyms":[{"name":"bipolar bud site selection","type":"exact"},{"name":"bipolar budding","type":"broad"},{"name":"polar budding","type":"broad"}],"termid":"GO:0007121"}


id: PBO:0050330
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"heterogeneous nuclear ribonucleoprotein A1 pseudogene 32","termid":"PBO:0050330"}


id: GO:1900757
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of D-amino-acid oxidase activity.","definition_xrefs":["GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of oxidoreductase activity","termid":"GO:0051341"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of D-amino-acid oxidase activity","synonyms":[{"name":"regulation of D-amino-acid:oxygen oxidoreductase (deaminating)","type":"exact"},{"name":"regulation of L-amino acid:O2 oxidoreductase activity","type":"exact"},{"name":"regulation of new yellow enzyme","type":"related"}],"termid":"GO:1900757"}


id: MOD:00410
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-cysteine residue to S-(N-isopropylcarboxamidomethyl)-L-cysteine.","definition_xrefs":["OMSSA:84","PubMed:8465942","Unimod:17#C","PubMed:11465505"],"direct_ancestors":[{"relation_name":"is_a","term_name":"reagent derivatized residue","termid":"MOD:00848"},{"relation_name":"is_a","term_name":"modified L-cysteine residue","termid":"MOD:00905"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"S-(N-isopropylcarboxamidomethyl)-L-cysteine","synonyms":[{"name":"N-isopropylcarboxamidomethyl","type":"related"},{"name":"NIPCAM","type":"related"},{"name":"nipcam","type":"exact"}],"termid":"MOD:00410"}


id: GO:0022614
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The initial attachment of a membrane to a target membrane, mediated by proteins protruding from the two membranes. Docking requires only that the membranes come close enough for the proteins to interact and adhere.","definition_xrefs":["GOC:isa_complete"],"direct_ancestors":[{"relation_name":"is_a","term_name":"membrane docking","termid":"GO:0022406"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"membrane to membrane docking","synonyms":[{"name":"membrane-membrane docking","type":"exact"}],"termid":"GO:0022614"}


id: GO:0002613
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate, or extent of monocyte antigen processing and presentation.","definition_xrefs":["GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of antigen processing and presentation","termid":"GO:0002577"},{"relation_name":"regulates","term_name":"monocyte antigen processing and presentation","termid":"GO:0002471"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of monocyte antigen processing and presentation","termid":"GO:0002613"}


id: GO:1990715
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to an mRNA molecule coding sequence (CDS).","definition_xrefs":["SO:0000316","PMID:25805859","GOC:kmv"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mRNA binding","termid":"GO:0003729"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003723"}],"interesting_parent_ids":["GO:0003723","GO:0003674","GO:0005488"],"is_obsolete":false,"name":"mRNA CDS binding","synonyms":[{"name":"mRNA coding region binding","type":"exact"},{"name":"mRNA coding sequence binding","type":"exact"}],"termid":"GO:1990715"}


id: PR:Q9UUD0
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPBC19C2.10 gene.","definition_xrefs":["UniProtKB:Q9UUD0","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized protein C19C2.10 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC19C2.10","synonyms":[{"name":"Spom972h-SPBC19C2.10","type":"exact"}],"termid":"PR:Q9UUD0"}


id: PBO:0000318
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"gluconate transporter inducer Gti1","termid":"PBO:0000318"}


id: GO:0099174
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the physical form of a presynapse.","definition_xrefs":["GOC:tb","GOC:ai","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of synapse organization","termid":"GO:0050807"},{"relation_name":"regulates","term_name":"presynapse organization","termid":"GO:0099172"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of presynapse organization","synonyms":[{"name":"regulation of presynapse organisation","type":"exact"},{"name":"regulation of presynapse organization and biogenesis","type":"related"},{"name":"regulation of presynapse structure","type":"exact"}],"termid":"GO:0099174"}


id: PR:Q9Y7Q6
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- set7 gene.","definition_xrefs":["UniProtKB:Q9Y7Q6","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SET domain-containing protein 7 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC297.04c","synonyms":[{"name":"Spom972h-set7","type":"exact"}],"termid":"PR:Q9Y7Q6"}


id: GO:0097605
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that modulates the frequency, rate or extent of the passage or uptake of molecules by the nuclear envelope.","definition_xrefs":["GOC:pr"],"gene_count":0,"genotype_count":0,"name":"obsolete regulation of nuclear envelope permeability (obsolete GO:0097605)","synonyms":[{"name":"regulation of nuclear membrane permeability","type":"related"}],"termid":"GO:0097605"}


id: PBO:0075371
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SRY-box transcription factor 9","termid":"PBO:0075371"}


id: GO:0048045
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: all-trans-pentaprenyl diphosphate + isopentenyl diphosphate = all-trans-hexaprenyl diphosphate + diphosphate.","definition_xrefs":["GOC:curators"],"gene_count":0,"genotype_count":0,"name":"obsolete trans-pentaprenyltranstransferase activity (obsolete GO:0048045)","secondary_identifiers":["KEGG_REACTION:R05613"],"synonyms":[{"name":"all-trans-hexaprenyl-diphosphate synthase activity","type":"related"},{"name":"all-trans-pentaprenyl-diphosphate:isopentenyl-diphosphate pentaprenyltranstransferase activity","type":"related"},{"name":"hexaprenyl diphosphate synthase activity","type":"related"},{"name":"hexaprenyl pyrophosphate synthetase activity","type":"exact"}],"termid":"GO:0048045"}


id: GO:0048307
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: NH3 + 2 H2O + 6 oxidized ferredoxin = nitrite + 6 reduced ferredoxin + 7 H+.","definition_xrefs":["GOC:jid","EC:1.7.7.1"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on other nitrogenous compounds as donors, iron-sulfur protein as acceptor","termid":"GO:0016664"},{"relation_name":"is_a","term_name":"nitrite reductase activity","termid":"GO:0098809"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0016491","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"ferredoxin-nitrite reductase activity","secondary_identifiers":["RHEA:18041","MetaCyc:FERREDOXIN--NITRITE-REDUCTASE-RXN"],"synonyms":[{"name":"ammonia:ferredoxin oxidoreductase activity","type":"related"}],"termid":"GO:0048307"}


id: PBO:0004518
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"deoxycytidylate deaminase (predicted)","termid":"PBO:0004518"}


id: PBO:0054339
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1732","termid":"PBO:0054339"}


id: PBO:0029444
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-growth_auxotrophic_for_glutamine","termid":"PBO:0029444"}


id: PBO:0081023
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger CCCH-type containing 4","termid":"PBO:0081023"}


id: PBO:0079267
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tetratricopeptide repeat domain 39A","termid":"PBO:0079267"}


id: PBO:0034055
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-determined_by","termid":"PBO:0034055"}


id: GO:0009489
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. A low molecular weight mononuclear iron protein involved in electron transfer, with an iron tetrahedrally coordinated by the sulfurs of four conserved cysteine residues.","definition_xrefs":["GOC:kd"],"gene_count":0,"genotype_count":0,"name":"obsolete rubredoxin (obsolete GO:0009489)","synonyms":[{"name":"rubredoxin","type":"exact"}],"termid":"GO:0009489"}


id: FYPO:0007726
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A vegetative cell population growth phenotype in which cell growth is decreased relative to normal in a medium containing L-phenylalanine as the nitrogen source.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased vegetative cell population growth","termid":"FYPO:0001355"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000139"},{"rel_name":"is_a","termid":"FYPO:0002057"},{"rel_name":"is_a","termid":"FYPO:0002058"},{"rel_name":"is_a","termid":"FYPO:0000003"},{"rel_name":"is_a","termid":"FYPO:0002060"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000003","FYPO:0000139","FYPO:0005447","FYPO:0002058","FYPO:0002060","FYPO:0002057"],"is_obsolete":false,"name":"decreased cell population growth on phenylalanine nitrogen source","synonyms":[{"name":"decreased growth on phenylalanine nitrogen source","type":"broad"},{"name":"decreased vegetative cell growth on phenylalanine nitrogen source","type":"exact"},{"name":"growth defect, slow growth with phenylalanine nitrogen source","type":"related"},{"name":"reduced cell growth on phenylalanine nitrogen source","type":"related"},{"name":"slow cell growth on phenylalanine nitrogen source","type":"narrow"}],"termid":"FYPO:0007726"}


id: SO:0001849
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A core promoter element that has the consensus sequence ACCCTACCCT (or its inverted form AGGGTAGGGT), and is found near the homol D box in some promoters that use a homol D box instead of a canonical TATA sequence.","definition_xrefs":["PMID:7501449"],"direct_ancestors":[{"relation_name":"is_a","term_name":"promoter_element","termid":"SO:0001659"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"homol_E_box","synonyms":[{"name":"homol E box","type":"exact"}],"termid":"SO:0001849"}


id: PBO:0080926
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta pseudogene 4","termid":"PBO:0080926"}


id: PBO:0061291
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NPAS2 antisense RNA 1","termid":"PBO:0061291"}


id: GO:0009827
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The series of events leading to chemical and structural alterations of an existing cellulose and pectin-containing cell wall that can result in loosening, increased extensibility or disassembly. An example of this is found in Arabidopsis thaliana.","definition_xrefs":["GOC:mtg_sensu","GOC:lr"],"direct_ancestors":[{"relation_name":"is_a","term_name":"plant-type cell wall organization","termid":"GO:0009664"},{"relation_name":"is_a","term_name":"cell wall modification","termid":"GO:0042545"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0071554"}],"interesting_parent_ids":["GO:0008150","GO:0071554"],"is_obsolete":false,"name":"plant-type cell wall modification","synonyms":[{"name":"cellulose and pectin-containing cell wall modification","type":"exact"}],"termid":"GO:0009827"}


id: FYPO:0006694
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which trimethylation of lysine at position 4 of histone H3 occurs to a lower extent than normal during G0 phase.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal chromatin organization during G0","termid":"FYPO:0003871"},{"relation_name":"is_a","term_name":"abnormal histone methylation","termid":"FYPO:0006870"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0002274"},{"rel_name":"is_a","termid":"FYPO:0002494"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000641"}],"interesting_parent_ids":["FYPO:0000641","FYPO:0000002","FYPO:0002494","FYPO:0002274","FYPO:0005447","FYPO:0001985"],"is_obsolete":false,"name":"decreased histone H3-K4 trimethylation during G0","synonyms":[{"name":"decreased histone H3 K4 trimethylation during G0","type":"exact"},{"name":"decreased histone H3-K4 trimethylation during cell quiescence","type":"exact"},{"name":"decreased histone H3-K4 trimethylation during quiescence","type":"exact"},{"name":"decreased histone H3K4 trimethylation during G0","type":"exact"},{"name":"decreased histone H3K4me3 during G0","type":"exact"},{"name":"decreased histone lysine H3 K4 trimethylation during G0","type":"exact"},{"name":"reduced histone H3-K4 trimethylation during G0","type":"exact"}],"termid":"FYPO:0006694"}


id: GO:0043859
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the hydrolytic cleavage of multi-L-arginyl-poly-L-aspartic acid (cyanophycin; a water-insoluble reserve polymer) into aspartate-arginine dipeptides.","definition_xrefs":["PMID:10429200"],"gene_count":0,"genotype_count":0,"name":"obsolete cyanophycinase activity (obsolete GO:0043859)","synonyms":[{"name":"cyanophycinase activity","type":"exact"}],"termid":"GO:0043859"}


id: PBO:0045420
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"divergent-paired related homeobox","termid":"PBO:0045420"}


id: GO:0120153
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a carbohydrate in the presence of calcium.","definition_xrefs":["PMID:25912189"],"direct_ancestors":[{"relation_name":"is_a","term_name":"carbohydrate binding","termid":"GO:0030246"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005488"}],"interesting_parent_ids":["GO:0005488","GO:0003674"],"is_obsolete":false,"name":"calcium-dependent carbohydrate binding","termid":"GO:0120153"}


id: PBO:0069956
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 1249, pseudogene","termid":"PBO:0069956"}


id: PBO:0074484
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SET and MYND domain containing 3","termid":"PBO:0074484"}


id: FYPO:0007523
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of protein measured in a cell during a cellular response to oxidative stress is lower than normal. Total protein or a specific protein may be affected.","definition_xrefs":["PMID:19625445","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased protein level during vegetative growth","termid":"FYPO:0001324"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0006551"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0006551","FYPO:0001985","FYPO:0000002","FYPO:0005447"],"is_obsolete":false,"name":"decreased protein level during cellular response to oxidative stress","synonyms":[{"name":"decreased protein accumulation during cellular response to oxidative stress","type":"exact"},{"name":"decreased protein level during cellular response to oxidative stress during mitotic cell cycle","type":"related"},{"name":"decreased protein level during cellular response to oxidative stress during vegetative growth","type":"exact"},{"name":"reduced protein level during cellular response to oxidative stress","type":"exact"}],"termid":"FYPO:0007523"}


id: PBO:0002301
data:
  {"annotation_feature_type":"gene","cv_name":"EC numbers","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"3.6.1.11","termid":"PBO:0002301"}


id: FYPO:0000398
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which progression through the G1/S transition of the mitotic cell cycle begins earlier than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal mitotic G1/S phase transition","termid":"FYPO:0000394"},{"relation_name":"is_a","term_name":"premature cell cycle phase transition","termid":"FYPO:0000827"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0001985","FYPO:0000002","FYPO:0000631","FYPO:0005447"],"is_obsolete":false,"name":"premature mitotic G1/S phase transition","synonyms":[{"name":"advanced mitotic G1/S phase transition during vegetative growth","type":"exact"},{"name":"cell cycle progression through the G1/S phase transition: premature","type":"related"},{"name":"premature G1/S phase transition during mitotic cell cycle","type":"exact"},{"name":"premature cell cycle progression through mitotic G1/S phase transition","type":"exact"},{"name":"premature mitotic G1/S phase transition during vegetative growth","type":"exact"},{"name":"premature mitotic G1/S transition","type":"exact"}],"termid":"FYPO:0000398"}


id: PBO:0084739
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Mitochondrial intermembrane space protein; involved in phospholipid metabolism; forms complex with Mdm35p that transfers phosphatidylserine from outer membrane to inner membrane for phosphatidylethanolamine synthesis; null mutant has defects in mitochondrial morphology; similar to Ups1p, Ups3p and to human PRELI; UPS2 has a paralog, UPS3, that arose from the whole genome duplication","termid":"PBO:0084739"}


id: GO:0046552
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which the developmental fate of a cell becomes restricted such that it will develop into a photoreceptor cell. A photoreceptor cell is a cell that responds to incident electromagnetic radiation. Different classes of photoreceptor have different spectral sensitivities and express different photosensitive pigments.","definition_xrefs":["GOC:mtg_sensu"],"direct_ancestors":[{"relation_name":"is_a","term_name":"neuron fate commitment","termid":"GO:0048663"},{"relation_name":"part_of","term_name":"photoreceptor cell differentiation","termid":"GO:0046530"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"photoreceptor cell fate commitment","termid":"GO:0046552"}


id: PBO:0044079
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cystatin pseudogene 1","termid":"PBO:0044079"}


id: PBO:0054753
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2164","termid":"PBO:0054753"}


id: FYPO:0004726
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which mitotic spindle orientation correction is normal (i.e. indistinguishable from wild type). Spindle orientation correction is the process by which a spindle that has formed in, or moved into, an incorrect orientation is restored to the correct orientation (parallel to the long axis of the cell).","definition_xrefs":["PomBase:mah","PMID:15772152"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular response phenotype during vegetative growth","termid":"FYPO:0001342"},{"relation_name":"is_a","term_name":"normal mitotic cell cycle process","termid":"FYPO:0002741"},{"relation_name":"is_a","term_name":"normal cellular component organization","termid":"FYPO:0006003"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001312"},{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000298"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0000257","FYPO:0001320","FYPO:0001312","FYPO:0000298"],"is_obsolete":false,"name":"normal mitotic spindle orientation correction","synonyms":[{"name":"normal correction of mitotic spindle orientation","type":"exact"},{"name":"normal mitotic spindle orientation correction during vegetative growth","type":"exact"},{"name":"normal repair of mitotic mono-orientation defect","type":"exact"},{"name":"normal spindle orientation correction during mitosis","type":"exact"},{"name":"normal spindle orientation correction during mitotic cell cycle","type":"related"}],"termid":"FYPO:0004726"}


id: GO:0016937
data:
  {"annotated_genes":["SJAG_00944"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[72686],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0003860"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: a short-chain 2,3-saturated fatty acyl-CoA + H+ + oxidized [electron-transfer flavoprotein] = a short-chain (2E)-enoyl-CoA + reduced [electron-transfer flavoprotein]. A short-chain fatty acid has an aliphatic tail containing fewer than 6 carbons.","definition_xrefs":["RHEA:47196"],"direct_ancestors":[{"relation_name":"is_a","term_name":"acyl-CoA dehydrogenase activity","termid":"GO:0003995"}],"gene_count":1,"genes_by_uniquename":{"SJAG_00944":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0016491","GO:0003824"],"is_obsolete":false,"name":"short-chain fatty acyl-CoA dehydrogenase activity","references_by_uniquename":{"GO_REF:0000033":null},"secondary_identifiers":["EC:1.3.8.1"],"synonyms":[{"name":"butanoyl-CoA dehydrogenase","type":"narrow"},{"name":"butyryl dehydrogenase","type":"narrow"},{"name":"short-chain acyl CoA dehydrogenase","type":"exact"},{"name":"short-chain-acyl-CoA dehydrogenase activity","type":"exact"},{"name":"unsaturated acyl-CoA reductase","type":"broad"}],"termid":"GO:0016937","terms_by_termid":{"GO:0003860":null}}


id: PBO:0045201
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DnaJ heat shock protein family (Hsp40) member B12","termid":"PBO:0045201"}


id: GO:0052913
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: S-adenosyl-L-methionine + guanosine(966) in 16S rRNA = N(2)-methylguanosine(966) in 16S rRNA + S-adenosyl-L-homocysteine.","definition_xrefs":["EC:2.1.1.171"],"direct_ancestors":[{"relation_name":"is_a","term_name":"rRNA (guanine-N2-)-methyltransferase activity","termid":"GO:0008990"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016741"},{"rel_name":"is_a","termid":"GO:0140098"},{"rel_name":"is_a","termid":"GO:0016740"}],"interesting_parent_ids":["GO:0140098","GO:0003674","GO:0016740","GO:0003824","GO:0016741"],"is_obsolete":false,"name":"16S rRNA (guanine(966)-N(2))-methyltransferase activity","secondary_identifiers":["KEGG_REACTION:R07234","MetaCyc:RXN0-6515","RHEA:23548"],"termid":"GO:0052913"}


id: PBO:0088999
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Golgi to plasma membrane transport protein","termid":"PBO:0088999"}


id: PBO:0054587
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1990","termid":"PBO:0054587"}


id: GO:1903897
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of the PERK-mediated unfolded protein response.","definition_xrefs":["PMID:22013210","GOC:PARL","GO_REF:0000058","GOC:bf","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of endoplasmic reticulum unfolded protein response","termid":"GO:1900101"},{"relation_name":"regulates","term_name":"PERK-mediated unfolded protein response","termid":"GO:0036499"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"regulation of PERK-mediated unfolded protein response","synonyms":[{"name":"regulation of EIF2AK3-mediated unfolded protein response","type":"related"},{"name":"regulation of PERK branch of UPR","type":"exact"},{"name":"regulation of PERK signal transduction pathway","type":"broad"},{"name":"regulation of PERK signaling in response to endoplasmic reticulum stress","type":"related"},{"name":"regulation of PKR-like ER kinase signal transduction","type":"exact"},{"name":"regulation of UPR signaling by PERK stress sensor","type":"exact"},{"name":"regulation of endoplasmic reticulum unfolded protein response; PERK signaling","type":"exact"}],"termid":"GO:1903897"}


id: PBO:0078592
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tripartite motif containing 60 pseudogene 5, Y-linked","termid":"PBO:0078592"}


id: PBO:0048008
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"FRMD6 antisense RNA 2","termid":"PBO:0048008"}


id: PBO:0054432
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1828","termid":"PBO:0054432"}


id: PBO:0039650
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"adaptor related protein complex 1 subunit mu 1","termid":"PBO:0039650"}


id: GO:0097215
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that decreases the frequency, rate or extent of the passage or uptake of molecules by the lysosomal membrane.","definition_xrefs":["GOC:yaf","PMID:20544854"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of lysosomal membrane permeability","termid":"GO:0097213"},{"relation_name":"is_a","term_name":"negative regulation of membrane permeability","termid":"GO:1905709"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0061024"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0061024","GO:0008150"],"is_obsolete":false,"name":"negative regulation of lysosomal membrane permeability","synonyms":[{"name":"negative regulation of lysosome membrane permeability","type":"exact"}],"termid":"GO:0097215"}


id: GO:0033830
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: UDP-N-acetylglucosamine + Skp1-protein-hydroxyproline = UDP + Skp1-protein-O-(N-acetyl-D-glucosaminyl)hydroxyproline.","definition_xrefs":["EC:2.4.1.229"],"direct_ancestors":[{"relation_name":"is_a","term_name":"acetylglucosaminyltransferase activity","termid":"GO:0008375"},{"relation_name":"is_a","term_name":"catalytic activity, acting on a protein","termid":"GO:0140096"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016757"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0140096"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016757","GO:0016740","GO:0140096","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"Skp1-protein-hydroxyproline N-acetylglucosaminyltransferase activity","secondary_identifiers":["RHEA:17841"],"synonyms":[{"name":"Skp1-HyPro GlcNAc-transferase activity","type":"related"},{"name":"UDP-GlcNAc:Skp1-hydroxyproline GlcNAc-transferase activity","type":"related"},{"name":"UDP-GlcNAc:hydroxyproline polypeptide GlcNAc-transferase activity","type":"related"},{"name":"UDP-N-acetyl-D-glucosamine:Skp1-protein-hydroxyproline N-acetyl-D-glucosaminyl-transferase activity","type":"related"},{"name":"UDP-N-acetylglucosamine (GlcNAc):hydroxyproline polypeptide GlcNAc-transferase activity","type":"related"}],"termid":"GO:0033830"}


id: PR:Q9UT74
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- lys2 gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q9UT74"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"homoaconitase, mitochondrial (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC343.16","synonyms":[{"name":"Spom972h-lys2","type":"exact"},{"name":"homoaconitate hydratase (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:Q9UT74"}


id: GO:0001524
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. The colorless and basic protein moiety of hemoglobin and myoglobins.","definition_xrefs":["GOC:ai","ISBN:0198506732"],"gene_count":0,"genotype_count":0,"name":"obsolete globin (obsolete GO:0001524)","synonyms":[{"name":"globin","type":"exact"}],"termid":"GO:0001524"}


id: GO:0061957
data:
  {"annotated_genes":["SJAG_01088","SJAG_03976","SJAG_00181"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[102121,109907,111088],"is_not":false,"summary":null,"term":"GO:0061957"}]},"cv_name":"cellular_component","definition":"A protein complex that is capable of contributing to protein localization by the NVT pathway. In fission yeast, the Nvt complex consists of Ape2, Lap2 and Nbr1.","definition_xrefs":["PMID:26365378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein-containing complex","termid":"GO:0032991"}],"gene_count":3,"genes_by_uniquename":{"SJAG_00181":null,"SJAG_01088":null,"SJAG_03976":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0005575","GO:0032991"],"is_obsolete":false,"name":"NVT complex","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0061957","terms_by_termid":{"GO:0061957":null}}


id: PBO:0049077
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"G protein-coupled receptor 108","termid":"PBO:0049077"}


id: PBO:0084455
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Mannosyltransferase; involved in adding the 4th and 5th mannose residues of O-linked glycans","termid":"PBO:0084455"}


id: GO:0005950
data:
  {"annotated_genes":["SJAG_02505","SJAG_01455"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[99799,111298],"is_not":false,"summary":null,"term":"GO:0005950"}]},"cv_name":"cellular_component","definition":"A heterotetrameric enzyme complex made up of two components I and two components II. Catalyzes the formation of anthranilate, pyruvate and L-glutamate from chorismate and L-glutamine.","definition_xrefs":["PMID:4886290"],"direct_ancestors":[{"relation_name":"is_a","term_name":"catalytic complex","termid":"GO:1902494"},{"relation_name":"part_of","term_name":"cytoplasm","termid":"GO:0005737"}],"gene_count":2,"genes_by_uniquename":{"SJAG_01455":null,"SJAG_02505":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0032991","GO:0005737","GO:0005575"],"is_obsolete":false,"name":"anthranilate synthase complex","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["MetaCyc:ANTHRANSYN-CPLX"],"termid":"GO:0005950","terms_by_termid":{"GO:0005950":null}}


id: GO:1901529
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of anion channel activity.","definition_xrefs":["GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of anion channel activity","termid":"GO:0010359"},{"relation_name":"is_a","term_name":"positive regulation of ion transmembrane transporter activity","termid":"GO:0032414"},{"relation_name":"is_a","term_name":"positive regulation of anion transmembrane transport","termid":"GO:1903961"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0055085"},{"rel_name":"positively_regulates","termid":"GO:0006810"},{"rel_name":"positively_regulates","termid":"GO:0055085"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0008150","GO:0055085","GO:0006810"],"is_obsolete":false,"name":"positive regulation of anion channel activity","synonyms":[{"name":"activation of anion channel activity","type":"narrow"},{"name":"up regulation of anion channel activity","type":"exact"},{"name":"up-regulation of anion channel activity","type":"exact"},{"name":"upregulation of anion channel activity","type":"exact"}],"termid":"GO:1901529"}


id: PR:Q9P7W0
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"An optic atrophy 3 protein that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx","PANTHER:PTHR12499:SF0"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"OPA3-like protein (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC1703.11","secondary_identifiers":["UniProtKB:Q9P7W0"],"synonyms":[{"name":"Spom972h-OPA3","type":"exact"}],"termid":"PR:Q9P7W0"}


id: PBO:0040974
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"BNIP3 pseudogene 45","termid":"PBO:0040974"}


id: GO:0034743
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A protein complex that contains the tumor suppressor protein adenomatous polyposis coli (APC) and the Rac1 and Cdc42 effector IQGAP1; may play a role in cytoskeleton organization and cell migration.","definition_xrefs":["PMID:15572129"],"direct_ancestors":[{"relation_name":"is_a","term_name":"intracellular protein-containing complex","termid":"GO:0140535"},{"relation_name":"is_a","term_name":"GTPase complex","termid":"GO:1905360"},{"relation_name":"part_of","term_name":"cell leading edge","termid":"GO:0031252"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0032991","GO:0005575"],"is_obsolete":false,"name":"APC-IQGAP complex","termid":"GO:0034743"}


id: GO:0048217
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The gel-like pectin matrix consists of the interlinked acidic and neutral pectin networks that are further cross-linked by calcium bridges. Pectins consist largely of long chains of mostly galacturonic acid units (typically 1,4 linkages and sometimes methyl esters). Three major pectic polysaccharides (homogalacturonan, rhamnogalacturonan I and rhamnogalacturonan II) are thought to occur in all primary cell walls.","definition_xrefs":["PMID:11554482","GOC:jid"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular anatomical entity","termid":"GO:0110165"},{"relation_name":"part_of","term_name":"primary cell wall","termid":"GO:0009530"},{"relation_name":"part_of","term_name":"secondary cell wall","termid":"GO:0009531"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005618"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005618","GO:0005575"],"is_obsolete":false,"name":"pectic matrix","termid":"GO:0048217"}


id: PBO:0036369
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"helper of TIM Hot13 (predicted)","termid":"PBO:0036369"}


id: FYPO:0000741
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the occurrence of cellular pigment accumulation is increased.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular pigment accumulation phenotype","termid":"FYPO:0000739"},{"relation_name":"is_a","term_name":"abnormal cellular process during vegetative growth","termid":"FYPO:0001362"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0000002","FYPO:0005447","FYPO:0001985"],"is_obsolete":false,"name":"increased cellular pigment accumulation","synonyms":[{"name":"abnormal cellular pigment accumulation","type":"exact"},{"name":"altered colony color","type":"related"},{"name":"altered colony colour","type":"related"},{"name":"increased cellular pigment accumulation during mitotic cell cycle","type":"related"},{"name":"increased cellular pigment accumulation during vegetative growth","type":"exact"}],"termid":"FYPO:0000741"}


id: PBO:0017993
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"M-factor transmembrane transporter Mam1","termid":"PBO:0017993"}


id: FYPO:0000997
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell morphology phenotype in which a cell is shaped in the form of a pear when the cell is subject to nitrogen starvation. One end is rounded, while the other resembles an end of a normal rod-shaped cell. The normally shaped end has the same diameter as a wild-type cell.","definition_xrefs":["PMID:19366728","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pear-shaped cell","termid":"FYPO:0000020"},{"relation_name":"is_a","term_name":"abnormal cell morphology during nitrogen starvation","termid":"FYPO:0000995"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000005"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0000005","FYPO:0001985","FYPO:0000002"],"is_obsolete":false,"name":"pear-shaped cell during nitrogen starvation","synonyms":[{"name":"cell morphology, pear shaped during nitrogen starvation","type":"exact"},{"name":"ice cream cone-shaped cell during nitrogen starvation","type":"exact"},{"name":"pear-shaped cell during nitrogen depletion","type":"exact"},{"name":"pear-shaped cell during nitrogen deprivation","type":"exact"}],"termid":"FYPO:0000997"}


id: GO:0019482
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving beta-alanine (3-aminopropanoic acid), an achiral amino acid and an isomer of alanine. It occurs free (e.g. in brain) and in combination (e.g. in pantothenate) but it is not a constituent of proteins.","definition_xrefs":["ISBN:0198506732","GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"non-proteinogenic amino acid metabolic process","termid":"GO:0170041"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0006520"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0044281","GO:0006520","GO:0008150"],"is_obsolete":false,"name":"beta-alanine metabolic process","secondary_identifiers":["Wikipedia:Beta-alanine"],"synonyms":[{"name":"beta-alanine metabolism","type":"exact"}],"termid":"GO:0019482"}


id: PBO:0080976
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger and BTB domain containing 11","termid":"PBO:0080976"}


id: FYPO:0007029
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to polysomes is decreased.","definition_xrefs":["PomBase:mah","PMID:31285271"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal protein localization during vegetative growth","termid":"FYPO:0000443"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0000138","FYPO:0005447","FYPO:0001320","FYPO:0001985","FYPO:0000002"],"is_obsolete":false,"name":"decreased protein localization to polysome","synonyms":[{"name":"decreased protein localisation to polysome","type":"exact"},{"name":"decreased protein localization to polyribosome","type":"exact"},{"name":"decreased protein localization to polysome during mitotic cell cycle","type":"related"},{"name":"decreased protein localization to polysome during vegetative growth","type":"exact"},{"name":"reduced protein localization to polysome","type":"exact"}],"termid":"FYPO:0007029"}


id: PBO:0109042
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"membrane palmitoyltransferase Pfa5","termid":"PBO:0109042"}


id: PBO:0040007
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ADP ribosylation factor like GTPase 15","termid":"PBO:0040007"}


id: PBO:0027183
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_chromatin_silencing_at_centromere_outer_repeat","termid":"PBO:0027183"}


id: FYPO:0001782
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A physical cellular phenotype observed in the vegetative growth phase of the life cycle in which the nucleus is constricted in the middle, resembling a figure 8.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal nuclear morphology during vegetative growth","termid":"FYPO:0000062"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"output_of","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0002403"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0002403","FYPO:0001985","FYPO:0000002","FYPO:0005447"],"is_obsolete":false,"name":"constricted nucleus","synonyms":[{"name":"constricted nuclei","type":"exact"},{"name":"constricted nucleus during mitotic cell cycle","type":"related"},{"name":"constricted nucleus during vegetative growth","type":"exact"}],"termid":"FYPO:0001782"}


id: PBO:0041596
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"carbonic anhydrase 7","termid":"PBO:0041596"}


id: GO:0090629
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which the synthesis of DNA from a template strand in a net 3' to 5' direction is started.","definition_xrefs":["GOC:mah","GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"DNA metabolic process","termid":"GO:0006259"},{"relation_name":"part_of","term_name":"lagging strand elongation","termid":"GO:0006273"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0006259"},{"rel_name":"is_a","termid":"GO:0006259"},{"rel_name":"part_of","termid":"GO:0006260"}],"interesting_parent_ids":["GO:0006259","GO:0006260","GO:0008150"],"is_obsolete":false,"name":"lagging strand initiation","termid":"GO:0090629"}


id: FYPO:0002143
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype in which the amount of reactive oxygen species (ROS) measured in a cell is lower than normal when the population in which the cell is found is in stationary phase.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased level of substance in cell","termid":"FYPO:0000991"},{"relation_name":"is_a","term_name":"altered cellular reactive oxygen species level","termid":"FYPO:0002142"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000002"],"is_obsolete":false,"name":"decreased cellular reactive oxygen species level in stationary phase","synonyms":[{"name":"decreased ROS accumulation in stationary phase","type":"related"},{"name":"decreased cellular ROS accumulation in stationary phase","type":"related"},{"name":"decreased cellular ROS level in stationary phase","type":"exact"},{"name":"decreased cellular reactive oxygen species accumulation in stationary phase","type":"related"},{"name":"reduced cellular ROS level in stationary phase","type":"exact"},{"name":"reduced cellular reactive oxygen species level in stationary phase","type":"exact"}],"termid":"FYPO:0002143"}


id: PBO:0069204
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 458, pseudogene","termid":"PBO:0069204"}


id: GO:0043540
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A homodimeric, bifunctional enzyme complex which catalyzes the synthesis and degradation of fructose 2,6-bisphosphate, and is required for both glycolysis and gluconeogenesis.","definition_xrefs":["GOC:so","GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"transferase complex, transferring phosphorus-containing groups","termid":"GO:0061695"},{"relation_name":"part_of","term_name":"cytosol","termid":"GO:0005829"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005829"},{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0005737"}],"interesting_parent_ids":["GO:0005575","GO:0005737","GO:0005829","GO:0032991"],"is_obsolete":false,"name":"6-phosphofructo-2-kinase/fructose-2,6-biphosphatase complex","synonyms":[{"name":"6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 1 complex","type":"narrow"},{"name":"6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 2 complex","type":"narrow"},{"name":"6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3 complex","type":"narrow"},{"name":"6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 4 complex","type":"narrow"}],"termid":"GO:0043540"}


id: PBO:0017775
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"conserved fungal protein Nst1","termid":"PBO:0017775"}


id: GO:0140590
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process mediated by a molecule secreted by a symbiont that results in the supression of a defense response. The host is defined as the larger of the organisms involved in a symbiotic interaction.","definition_xrefs":["PMID:28082413"],"direct_ancestors":[{"relation_name":"is_a","term_name":"symbiont-mediated suppression of host defenses","termid":"GO:0044414"},{"relation_name":"is_a","term_name":"effector-mediated modulation of host defenses by symbiont","termid":"GO:0140415"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"effector-mediated suppression of host defense response","synonyms":[{"name":"effector-mediated suppression of host defenses","type":"related"},{"name":"effector-mediated suppression of host defenses by symbiont","type":"exact"}],"termid":"GO:0140590"}


id: GO:0002091
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of receptor internalization.","definition_xrefs":["GOC:hjd"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of receptor internalization","termid":"GO:0002090"},{"relation_name":"is_a","term_name":"negative regulation of receptor-mediated endocytosis","termid":"GO:0048261"},{"relation_name":"negatively_regulates","term_name":"receptor internalization","termid":"GO:0031623"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"regulates","termid":"GO:0016192"},{"rel_name":"negatively_regulates","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"negatively_regulates","termid":"GO:0016192"}],"interesting_parent_ids":["GO:0008150","GO:0006810","GO:0016192"],"is_obsolete":false,"name":"negative regulation of receptor internalization","synonyms":[{"name":"down regulation of receptor internalization","type":"exact"},{"name":"down-regulation of receptor internalization","type":"exact"},{"name":"downregulation of receptor internalization","type":"exact"},{"name":"inhibition of receptor internalization","type":"narrow"}],"termid":"GO:0002091"}


id: GO:0048817
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of hair follicle maturation.","definition_xrefs":["GOC:devbiol"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of hair follicle maturation","termid":"GO:0048819"},{"relation_name":"is_a","term_name":"negative regulation of hair follicle development","termid":"GO:0051799"},{"relation_name":"negatively_regulates","term_name":"hair follicle maturation","termid":"GO:0048820"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of hair follicle maturation","synonyms":[{"name":"down regulation of hair follicle maturation","type":"exact"},{"name":"down-regulation of hair follicle maturation","type":"exact"},{"name":"downregulation of hair follicle maturation","type":"exact"},{"name":"inhibition of hair follicle maturation","type":"narrow"}],"termid":"GO:0048817"}


id: PBO:0064998
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PR/SET domain 5","termid":"PBO:0064998"}


id: GO:1990871
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A protein complex that is involved in the assembly of the V-ATPase complex. In the budding yeast Saccharomyces cerevisiae, this complex consists of Vma12p and Vma22p.","definition_xrefs":["PMID:9660861","GOC:rb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein-containing complex","termid":"GO:0032991"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575","GO:0032991"],"is_obsolete":false,"name":"Vma12-Vma22 assembly complex","termid":"GO:1990871"}


id: SO:0000923
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"An edit to insert a G.","definition_xrefs":["SO:ke"],"gene_count":0,"genotype_count":0,"name":"OBSOLETE SO:0000923 insert_G (obsolete SO:0000923)","synonyms":[{"name":"insert G","type":"exact"}],"termid":"SO:0000923"}


id: GO:0120224
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The biological process whose specific outcome is the progression of a larynx from an initial condition to its mature state. This process begins with the formation of the larynx and ends with the mature structure. A larynx is a continuation of the pharynx that is involved in breathing, sound production, and protecting the trachea against food aspiration.","definition_xrefs":["GOC:krc","PMID:28177282"],"direct_ancestors":[{"relation_name":"is_a","term_name":"animal organ development","termid":"GO:0048513"},{"relation_name":"part_of","term_name":"respiratory system development","termid":"GO:0060541"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"larynx development","termid":"GO:0120224"}


id: PBO:0002080
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cytoskeletal protein binding protein Sla1 family, Shd1 (predicted)","termid":"PBO:0002080"}


id: PBO:0049586
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"H3 clustered histone 4","termid":"PBO:0049586"}


id: PBO:0085241
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Peptidyl-prolyl cis-trans isomerase (cyclophilin); catalyzes the cis-trans isomerization of peptide bonds N-terminal to proline residues; plays a role in determining prion variants; binds to Hsp82p and contributes to chaperone activity; protein abundance increases in response to DNA replication stress","termid":"PBO:0085241"}


id: GO:0034269
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of discadenine, (2S)-2-amino-4-{6-[(3-methylbut-2-en-1-yl)amino]-3H-purin-3-yl}butanoic acid.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cytokinin catabolic process","termid":"GO:0009823"},{"relation_name":"is_a","term_name":"discadenine metabolic process","termid":"GO:0034267"},{"relation_name":"is_a","term_name":"purine-containing compound catabolic process","termid":"GO:0072523"},{"relation_name":"is_a","term_name":"L-amino acid catabolic process","termid":"GO:0170035"},{"relation_name":"is_a","term_name":"non-proteinogenic amino acid catabolic process","termid":"GO:0170044"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044248"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0006520"}],"interesting_parent_ids":["GO:0008150","GO:0044248","GO:0044281","GO:0006520"],"is_obsolete":false,"name":"discadenine catabolic process","synonyms":[{"name":"discadenine breakdown","type":"exact"},{"name":"discadenine catabolism","type":"exact"},{"name":"discadenine degradation","type":"exact"}],"termid":"GO:0034269"}


id: FYPO:0001011
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A physical cellular phenotype observed in the vegetative growth phase of the life cycle in which cells do not contain filamentous actin structures, such as cortical patches or dots, or rings.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal subcellular component during vegetative growth","termid":"FYPO:0001322"},{"relation_name":"is_a","term_name":"altered level of macromolecular complex during vegetative growth","termid":"FYPO:0003684"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0000002","FYPO:0001985"],"is_obsolete":false,"name":"filamentous actin absent","synonyms":[{"name":"F-actin absent","type":"exact"},{"name":"actin filaments absent","type":"exact"},{"name":"filamentous actin absent during mitotic cell cycle","type":"related"},{"name":"filamentous actin absent during vegetative growth","type":"exact"}],"termid":"FYPO:0001011"}


id: GO:0075096
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process in which the host organism modulates the frequency, rate or extent of the symbiont signal transduction mediated by G-protein gamma subunit. The host is defined as the larger of the organisms involved in a symbiotic interaction.","definition_xrefs":["GOC:pamgo_curators"],"gene_count":0,"genotype_count":0,"name":"obsolete modulation by host of symbiont signal transduction mediated by G-protein gamma subunit (obsolete GO:0075096)","termid":"GO:0075096"}


id: GO:0051567
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The modification of histone H3 by addition of one or more methyl groups to lysine at position 9 of the histone.","definition_xrefs":["GOC:ai","GOC:pr"],"gene_count":0,"genotype_count":0,"name":"obsolete histone H3-K9 methylation (obsolete GO:0051567)","synonyms":[{"name":"histone H3 K9 methylation","type":"exact"},{"name":"histone H3K9me","type":"exact"},{"name":"histone lysine H3 K9 methylation","type":"exact"}],"termid":"GO:0051567"}


id: PBO:0047393
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"F-box protein 33","termid":"PBO:0047393"}


id: PR:Q9UT84
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPAC343.06c gene.","definition_xrefs":["UniProtKB:Q9UT84","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"phospholipid scramblase family protein C343.06c (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC343.06c","synonyms":[{"name":"Spom972h-SPAC343.06c","type":"exact"}],"termid":"PR:Q9UT84"}


id: PBO:0055317
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2745","termid":"PBO:0055317"}


id: GO:0075150
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process in which the symbiont organism modulates the frequency, rate or extent of its receptor-mediated signal transduction as a result of detecting molecules of its host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction.","definition_xrefs":["GOC:pamgo_curators"],"gene_count":0,"genotype_count":0,"name":"obsolete regulation of receptor-mediated signal transduction in response to host (obsolete GO:0075150)","synonyms":[{"name":"regulation of symbiont receptor-mediated signal transduction in response to host","type":"exact"}],"termid":"GO:0075150"}


id: PBO:0043659
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"coenzyme Q4","termid":"PBO:0043659"}


id: PBO:0058183
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 4477a","termid":"PBO:0058183"}


id: GO:1990560
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Binding to a DNA methyltransferase.","definition_xrefs":["PMID:22880885"],"gene_count":0,"genotype_count":0,"name":"obsolete DNA methyltransferase binding (obsolete GO:1990560)","synonyms":[{"name":"DNA methyltransferase binding","type":"exact"}],"termid":"GO:1990560"}


id: FYPO:0005971
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which proton transport is abnormal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal transport","termid":"FYPO:0001720"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0001985","FYPO:0000138","FYPO:0000002"],"is_obsolete":false,"name":"abnormal proton transport","synonyms":[{"name":"abnormal H+ ion transport","type":"exact"},{"name":"abnormal hydrogen ion transport","type":"exact"},{"name":"abnormal proton transmembrane transport","type":"exact"}],"termid":"FYPO:0005971"}


id: PBO:0069989
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 1284, pseudogene","termid":"PBO:0069989"}


id: PATO:0001404
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A cellular quality inhering in a bearer by virtue of bearer's number of nuclei.","definition_xrefs":["PATOC:GVG"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular quality","termid":"PATO:0001396"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nucleate quality","termid":"PATO:0001404"}


id: PBO:0073520
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SH3 domain binding protein 2","termid":"PBO:0073520"}


id: PBO:0059321
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial ribosomal protein L57 pseudogene 6","termid":"PBO:0059321"}


id: SO:0002039
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A shRNA primary transcript that also encodes pre-miR sequence that is processed to form functionally active miRNA.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"has_part","term_name":"pre_miRNA","termid":"SO:0001244"},{"relation_name":"is_a","term_name":"shRNA_primary_transcript","termid":"SO:0002038"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"miR_encoding_shRNA_primary_transcript","synonyms":[{"name":"miR encoding shRNA primary transcript","type":"exact"}],"termid":"SO:0002039"}


id: FYPO:0007944
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which any process of chromatin loop formation is abnormal during meiotic prophase I.","definition_xrefs":["PomBase:val"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal chromatin organization during meiotic cell cycle","termid":"FYPO:0007943"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000641"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000631"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001985","FYPO:0005447","FYPO:0000641","FYPO:0000631"],"is_obsolete":false,"name":"abnormal chromatin loop formation during meiotic prophase I","synonyms":[{"name":"abnormal chromatin looping during meiotic prophase I","type":"exact"}],"termid":"FYPO:0007944"}


id: GO:0007273
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. (Was not defined before being made obsolete).","definition_xrefs":["GOC:ai"],"gene_count":0,"genotype_count":0,"name":"obsolete regulation of synapse (obsolete GO:0007273)","synonyms":[{"name":"regulation of synapse","type":"exact"}],"termid":"GO:0007273"}


id: GO:0001845
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process that results in the fusion of a phagosome, a vesicle formed by phagocytosis, with a lysosome.","definition_xrefs":["GOC:add","ISBN:0781735149"],"direct_ancestors":[{"relation_name":"is_a","term_name":"lysosome organization","termid":"GO:0007040"},{"relation_name":"is_a","term_name":"vesicle organization","termid":"GO:0016050"},{"relation_name":"is_a","term_name":"organelle assembly","termid":"GO:0070925"},{"relation_name":"part_of","term_name":"phagocytosis","termid":"GO:0006909"},{"relation_name":"part_of","term_name":"phagosome maturation","termid":"GO:0090382"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0016192"},{"rel_name":"part_of","termid":"GO:0044085"}],"interesting_parent_ids":["GO:0006810","GO:0044085","GO:0016192","GO:0008150"],"is_obsolete":false,"name":"phagolysosome assembly","synonyms":[{"name":"late phagosome biosynthesis","type":"related"},{"name":"late phagosome formation","type":"related"},{"name":"phagolysosome formation","type":"related"}],"termid":"GO:0001845"}


id: GO:0008498
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. The trans-bilayer migration of phospholipids accelerated by a phospholipid scramblase upon binding calcium ions.","definition_xrefs":["OMIM:604170"],"gene_count":0,"genotype_count":0,"name":"obsolete phospholipid scrambling (obsolete GO:0008498)","synonyms":[{"name":"phospholipid scrambling","type":"exact"}],"termid":"GO:0008498"}


id: GO:0140270
data:
  {"annotated_genes":["SJAG_04905"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[88452],"is_not":false,"summary":null,"term":"GO:0140270"}]},"cv_name":"biological_process","definition":"The directed movement of gluconate from outside of a cell, across the plasma membrane and into the cytosol.","definition_xrefs":["PMID:10735857"],"direct_ancestors":[{"relation_name":"is_a","term_name":"gluconate transmembrane transport","termid":"GO:0035429"},{"relation_name":"is_a","term_name":"import across plasma membrane","termid":"GO:0098739"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04905":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0055085"},{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0051179"}],"interesting_parent_ids":["GO:0055085","GO:0006810","GO:0051179","GO:0008150"],"is_obsolete":false,"name":"gluconate import across plasma membrane","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0140270","terms_by_termid":{"GO:0140270":null}}


id: GO:0046131
data:
  {"annotated_genes":["SJAG_00694","SJAG_01673"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[69994],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0009972"},{"annotations":[72989],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0046132"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways involving any ribonucleoside, a nucleoside in which pyrimidine base is linked to a ribose (beta-D-ribofuranose) molecule.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pyrimidine nucleoside metabolic process","termid":"GO:0006213"},{"relation_name":"is_a","term_name":"ribonucleoside metabolic process","termid":"GO:0009119"}],"gene_count":2,"genes_by_uniquename":{"SJAG_00694":null,"SJAG_01673":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0055086"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0008150","GO:0044281","GO:0055086"],"is_obsolete":false,"name":"pyrimidine ribonucleoside metabolic process","references_by_uniquename":{"GO_REF:0000033":null},"synonyms":[{"name":"pyrimidine ribonucleoside metabolism","type":"exact"}],"termid":"GO:0046131","terms_by_termid":{"GO:0009972":null,"GO:0046132":null}}


id: PBO:0001398
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"methionine synthase reductase (predicted)","termid":"PBO:0001398"}


id: PBO:0047387
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"F-box protein 25","termid":"PBO:0047387"}


id: MOD:01573
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively replaces the O4'-hydrogen atom of a tyrosine residue with the Applied Biosystems iTRAQ8plex-119 reporter+balance group.","definition_xrefs":["Unimod:731#Y"],"direct_ancestors":[{"relation_name":"is_a","term_name":"modified L-tyrosine residue","termid":"MOD:00919"},{"relation_name":"is_a","term_name":"iTRAQ8plex-119 reporter+balance reagent acylated residue","termid":"MOD:01570"},{"relation_name":"is_a","term_name":"iTRAQ8plex reporter+balance reagent O-acylated residue","termid":"MOD:01714"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:00649"}],"interesting_parent_ids":["MOD:00649"],"is_obsolete":false,"name":"iTRAQ8plex-119 reporter+balance reagent O4'-acylated tyrosine","synonyms":[{"name":"(4-methylpiperazin-1-yl)acetyl","type":"exact"},{"name":"Accurate mass for 115, 118, 119 & 121","type":"related"},{"name":"Applied Biosystems iTRAQ(TM) multiplexed quantitation chemistry","type":"related"},{"name":"iTRAQ8plex:13C(6)15N(2)","type":"related"}],"termid":"MOD:01573"}


id: MOD:01780
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-lysine residue to N6-(beta-lysyl)-L-5-hydroxylysine by formation of an isopeptide bond between the carboxyl group of a free beta-lysine and the N6-amino group of a peptidyl L-lysine.","definition_xrefs":["PubMed:18201202","RESID:AA0531","PubMed:20729861"],"direct_ancestors":[{"relation_name":"is_a","term_name":"5-hydroxy-L-lysine","termid":"MOD:00037"},{"relation_name":"is_a","term_name":"N6-acylated L-lysine","termid":"MOD:01875"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:00649"}],"interesting_parent_ids":["MOD:00649"],"is_obsolete":false,"name":"N6-(beta-lysyl)-L-5-hydroxylysine","synonyms":[{"name":"(2S)-2-amino-6-([(3R)-3,6-diaminohexanoyl]amino)-5-hydroxyhexanoic acid","type":"exact"},{"name":"5-hydroxy-N6-(beta-lysyl)-L-lysine","type":"exact"},{"name":"5-hydroxy-N6-[(3R)-beta-lysyl]lysine","type":"exact"},{"name":"EF-P lysine derivative","type":"exact"},{"name":"MOD_RES N6-(3,6-diaminohexanoyl)-5-hydroxylysine","type":"exact"},{"name":"N6-[(3R)-3,6-diaminohexanoyl]-L-5-hydroxylysine","type":"exact"},{"name":"lysyl spermidine derivative [misidentification]","type":"exact"}],"termid":"MOD:01780"}


id: PBO:0088099
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Uracil-DNA glycosylase; required for repair of uracil in DNA formed by spontaneous cytosine deamination; efficiently excises uracil from single-stranded DNA in vivo; not required for strand-specific mismatch repair; cell-cycle regulated, expressed in late G1; localizes to mitochondria and nucleus","termid":"PBO:0088099"}


id: GO:0016323
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The region of the plasma membrane that includes the basal end and sides of the cell. Often used in reference to animal polarized epithelial membranes, where the basal membrane is the part attached to the extracellular matrix, or in plant cells, where the basal membrane is defined with respect to the zygotic axis.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"plasma membrane region","termid":"GO:0098590"},{"relation_name":"part_of","term_name":"basal plasma membrane","termid":"GO:0009925"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005886"}],"interesting_parent_ids":["GO:0005575","GO:0005886"],"is_obsolete":false,"name":"basolateral plasma membrane","termid":"GO:0016323"}


id: PBO:0069349
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 609, pseudogene","termid":"PBO:0069349"}


id: GO:0005854
data:
  {"annotated_genes":["SJAG_01641","SJAG_01733"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[75810,103698],"is_not":false,"summary":null,"term":"GO:0005854"}]},"cv_name":"cellular_component","definition":"A heterodimeric protein complex that can reversibly bind to ribosomes, and is located in direct proximity to newly synthesized polypeptide chains as they emerge from the ribosome.","definition_xrefs":["PMID:7568149","PMID:12475173"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein-containing complex","termid":"GO:0032991"},{"relation_name":"part_of","term_name":"cytoplasm","termid":"GO:0005737"}],"gene_count":2,"genes_by_uniquename":{"SJAG_01641":null,"SJAG_01733":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0032991","GO:0005575","GO:0005737"],"is_obsolete":false,"name":"nascent polypeptide-associated complex","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"synonyms":[{"name":"NAC","type":"exact"},{"name":"NACA","type":"exact"}],"termid":"GO:0005854","terms_by_termid":{"GO:0005854":null}}


id: PR:O94345
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- mrpl8 gene.","definition_xrefs":["UniProtKB:O94345","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"54S ribosomal protein L8, mitochondrial (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC1271.13","synonyms":[{"name":"Spom972h-mrpl8","type":"exact"}],"termid":"PR:O94345"}


id: PBO:0108568
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"armadillo-type fold protein, zf-MYND type zinc finger protein, Mub1-Rad6-Ubr2 ubiquitin ligase complex Mub1","termid":"PBO:0108568"}


id: GO:0100011
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any prostaglandin secretion process that positively_regulates fever generation.","definition_xrefs":["GOC:obol","GOC:cjm"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of fever generation by prostaglandin secretion","termid":"GO:0100009"},{"relation_name":"positively_regulates","term_name":"fever generation","termid":"GO:0001660"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"part_of","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006810","GO:0023052","GO:0051179","GO:0008150"],"is_obsolete":false,"name":"positive regulation of fever generation by prostaglandin secretion","termid":"GO:0100011"}


id: FYPO:0005731
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which the observed rate of arginase activity is decreased.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased catalytic activity","termid":"FYPO:0000663"},{"relation_name":"is_a","term_name":"abnormal arginase activity","termid":"FYPO:0005730"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000661"},{"rel_name":"is_a","termid":"FYPO:0000654"},{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000707"}],"interesting_parent_ids":["FYPO:0000661","FYPO:0000707","FYPO:0000654","FYPO:0001985","FYPO:0000652"],"is_obsolete":false,"name":"decreased arginase activity","synonyms":[{"name":"reduced arginase activity","type":"exact"}],"termid":"FYPO:0005731"}


id: PR:Q9HDW9
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"An N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PANTHER:PTHR12993:SF2","PRO:DNx","OMA:SCHPO01136"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAPB2B4.01c","secondary_identifiers":["UniProtKB:Q9HDW9"],"synonyms":[{"name":"Spom972h-PIGL","type":"exact"}],"termid":"PR:Q9HDW9"}


id: GO:1990596
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The modification of histone H3 by the removal of an acetyl group from lysine at position 4 of the histone.","definition_xrefs":["PMID:20299449"],"gene_count":0,"genotype_count":0,"name":"obsolete histone H3-K4 deacetylation (obsolete GO:1990596)","termid":"GO:1990596"}


id: PBO:0013784
data:
  {"annotation_feature_type":"gene","cv_name":"name_description","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Nucleolus, Spindle, Kinetochore","termid":"PBO:0013784"}


id: FYPO:0005861
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which CCR4-NOT complex binding by a gene product (usually a protein) in a mutant does not occur. The affected gene product may be encoded by the mutated gene, or by a different gene.","definition_xrefs":["PMID:26942678","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abolished protein-protein interaction","termid":"FYPO:0000705"},{"relation_name":"is_a","term_name":"abnormal protein complex binding","termid":"FYPO:0003591"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000707"},{"rel_name":"is_a","termid":"FYPO:0000702"},{"rel_name":"is_a","termid":"FYPO:0000652"}],"interesting_parent_ids":["FYPO:0000652","FYPO:0000702","FYPO:0001985","FYPO:0000707"],"is_obsolete":false,"name":"abolished CCR4-NOT complex binding","synonyms":[{"name":"CCR4-NOT complex binding abolished","type":"exact"}],"termid":"FYPO:0005861"}


id: PBO:0081211
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger matrin-type 1","termid":"PBO:0081211"}


id: PBO:0039821
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ARFGEF1 divergent transcript","termid":"PBO:0039821"}


id: PBO:0072276
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein S23 pseudogene 5","termid":"PBO:0072276"}


id: PBO:0039508
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ankyrin repeat domain 28","termid":"PBO:0039508"}


id: PR:P40379
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- rep1 gene.","definition_xrefs":["UniProtKB:P40379","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transcriptional activator protein rec16 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC2D10.06","synonyms":[{"name":"Spom972h-rep1","type":"exact"},{"name":"zinc finger protein rep1 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:P40379"}


id: PBO:0028941
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_poly(U)_polymerase_activity","termid":"PBO:0028941"}


id: FYPO:0004600
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A conjugation phenotype in which regulation of transcription in response to mating pheromone is normal (i.e. indistinguishable from wild type).","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal cellular process","termid":"FYPO:0000627"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000257"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0000257"],"is_obsolete":false,"name":"normal transcriptional response to pheromone","synonyms":[{"name":"normal regulation of transcription from RNA polymerase II promoter by pheromones","type":"exact"}],"termid":"FYPO:0004600"}


id: GO:0002431
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The series of molecular signals generated as a consequence of a the binding of the Fc portion of an immunoglobulin by an Fc receptor capable of activating or perpetuating an immune response. The Fc portion of an immunoglobulin is its C-terminal constant region.","definition_xrefs":["GOC:add","GO_REF:0000022","ISBN:0781735149"],"direct_ancestors":[{"relation_name":"is_a","term_name":"immune response-activating cell surface receptor signaling pathway","termid":"GO:0002429"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"Fc receptor mediated stimulatory signaling pathway","synonyms":[{"name":"Fc receptor mediated stimulatory signalling pathway","type":"exact"},{"name":"Fc-receptor mediated stimulatory signaling pathway","type":"exact"}],"termid":"GO:0002431"}


id: GO:0000972
data:
  {"annotated_genes":["SJAG_01374","SJAG_03986","SJAG_03299","SJAG_04379","SJAG_04148","SJAG_02757","SJAG_04347","SJAG_00298"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[73101,74438,75778,78824],"is_not":false,"summary":null,"term":"GO:0000972"},{"annotations":[106901,98221,74891,87944],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0000973"}]},"cv_name":"biological_process","definition":"The chromosome organization process in which the DNA sequence containing a gene transcribed by RNA polymerase II is maintained in a specific location at the nuclear periphery. In S. cerevisiae, this process involves cis-acting DNA sequences such as the TATA box and upstream activating sequence (UAS) elements, trans-acting transcriptional activators, and also the 3'-UTR of the transcript.","definition_xrefs":["GOC:krc","PMID:18614049"],"direct_ancestors":[{"relation_name":"is_a","term_name":"chromosome organization","termid":"GO:0051276"}],"gene_count":8,"genes_by_uniquename":{"SJAG_00298":null,"SJAG_01374":null,"SJAG_02757":null,"SJAG_03299":null,"SJAG_03986":null,"SJAG_04148":null,"SJAG_04347":null,"SJAG_04379":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"transcription-dependent tethering of RNA polymerase II gene DNA at nuclear periphery","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"termid":"GO:0000972","terms_by_termid":{"GO:0000972":null,"GO:0000973":null}}


id: GO:0070155
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process of coupling methionine to methionyl-tRNA in a mitochondrion, catalyzed by methionyl-tRNA synthetase. In tRNA aminoacylation, the amino acid is first activated by linkage to AMP and then transferred to either the 2'- or the 3'-hydroxyl group of the 3'-adenosine residue of the tRNA.","definition_xrefs":["GOC:mah","GOC:mcc"],"direct_ancestors":[{"relation_name":"is_a","term_name":"methionyl-tRNA aminoacylation","termid":"GO:0006431"},{"relation_name":"is_a","term_name":"tRNA aminoacylation for mitochondrial protein translation","termid":"GO:0070127"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006520"},{"rel_name":"part_of","termid":"GO:0010467"},{"rel_name":"part_of","termid":"GO:0140053"},{"rel_name":"is_a","termid":"GO:0006399"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0140053","GO:0010467","GO:0008150","GO:0006520","GO:0006399"],"is_obsolete":false,"name":"mitochondrial methionyl-tRNA aminoacylation","termid":"GO:0070155"}


id: GO:0042789
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The cellular synthesis of messenger RNA (mRNA) from a DNA template by RNA polymerase II, originating at an RNA polymerase II promoter.","definition_xrefs":["ISBN:0321000382","GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"transcription by RNA polymerase II","termid":"GO:0006366"},{"relation_name":"is_a","term_name":"mRNA transcription","termid":"GO:0009299"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006351"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0016071"},{"rel_name":"part_of","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0006351","GO:0010467","GO:0008150","GO:0016071"],"is_obsolete":false,"name":"mRNA transcription by RNA polymerase II","synonyms":[{"name":"mRNA transcription from Pol II promoter","type":"exact"},{"name":"mRNA transcription from RNA polymerase II promoter","type":"exact"}],"termid":"GO:0042789"}


id: PBO:0071057
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L21 pseudogene 59","termid":"PBO:0071057"}


id: MOD:01736
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively replaces a hydrogen atom of a residue with the Proteome Sciences TMT6plex-128 reporter+balance group.","definition_xrefs":["Unimod:737"],"direct_ancestors":[{"relation_name":"is_a","term_name":"TMT6plex reporter+balance reagent acylated residue","termid":"MOD:01715"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:00649"}],"interesting_parent_ids":["MOD:00649"],"is_obsolete":false,"name":"TMT6plex-128 reporter+balance reagent acylated residue","synonyms":[{"name":"3-[(2,6-dimethylpiperidin-1-yl)acetyl]amino)propanoyl","type":"exact"},{"name":"Sixplex Tandem Mass Tag(TM)","type":"related"},{"name":"TMT6plex","type":"related"}],"termid":"MOD:01736"}


id: SO:0000790
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"An attribute describing a feature that is invalidated.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"status","termid":"SO:0000905"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"invalidated","termid":"SO:0000790"}


id: GO:0021661
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which the anatomical structure of rhombomere 4 is generated and organized. Rhombomeres are transverse segments of the developing rhombencephalon. Rhombomeres are lineage restricted, express different genes from one another, and adopt different developmental fates. Rhombomeres are numbered in an anterior to posterior order.","definition_xrefs":["GOC:curators","GOC:jid","GOC:dgh","GO_REF:0000021","GOC:cls","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"rhombomere morphogenesis","termid":"GO:0021593"},{"relation_name":"part_of","term_name":"rhombomere 4 development","termid":"GO:0021570"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"rhombomere 4 morphogenesis","termid":"GO:0021661"}


id: PBO:0043152
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"capicua transcriptional repressor pseudogene 20","termid":"PBO:0043152"}


id: PBO:0003991
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"6-phosphofructokinase (predicted)","termid":"PBO:0003991"}


id: GO:0036116
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of long-chain fatty-acyl-CoAs, any derivative of coenzyme A in which the sulfhydryl group is in a thioester linkage with a long-chain fatty-acyl group. A long-chain fatty acid has an aliphatic tail containing 13 to 22 carbons.","definition_xrefs":["GOC:pm"],"direct_ancestors":[{"relation_name":"is_a","term_name":"long-chain fatty-acyl-CoA metabolic process","termid":"GO:0035336"},{"relation_name":"is_a","term_name":"fatty-acyl-CoA catabolic process","termid":"GO:0036115"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006790"},{"rel_name":"is_a","termid":"GO:0055086"},{"rel_name":"is_a","termid":"GO:0044248"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0006629"}],"interesting_parent_ids":["GO:0006790","GO:0006629","GO:0044248","GO:0008150","GO:0055086","GO:0044281"],"is_obsolete":false,"name":"long-chain fatty-acyl-CoA catabolic process","synonyms":[{"name":"long-chain fatty-acyl-CoA breakdown","type":"exact"},{"name":"long-chain fatty-acyl-CoA catabolism","type":"exact"},{"name":"long-chain fatty-acyl-CoA degradation","type":"exact"}],"termid":"GO:0036116"}


id: GO:1990941
data:
  {"annotated_genes":["SJAG_00918"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[103900],"is_not":false,"summary":null,"term":"GO:1990941"}]},"cv_name":"cellular_component","definition":"Any of the mitotic spindle microtubules that attach to the kinetochores of chromosomes by their plus ends, and maneuver the chromosomes during mitotic chromosome segregation.","definition_xrefs":["PMID:18256284"],"direct_ancestors":[{"relation_name":"is_a","term_name":"kinetochore microtubule","termid":"GO:0005828"},{"relation_name":"is_a","term_name":"mitotic spindle microtubule","termid":"GO:1990498"}],"gene_count":1,"genes_by_uniquename":{"SJAG_00918":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0072686"},{"rel_name":"part_of","termid":"GO:0015630"}],"interesting_parent_ids":["GO:0072686","GO:0015630","GO:0005575"],"is_obsolete":false,"name":"mitotic spindle kinetochore microtubule","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:1990941","terms_by_termid":{"GO:1990941":null}}


id: MOD:02002
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively replaces a residue sulfanyl group with a palmitoleylsulfanyl group.","direct_ancestors":[{"relation_name":"is_a","term_name":"S-acylated residue","termid":"MOD:00672"},{"relation_name":"is_a","term_name":"palmitoleylated residue","termid":"MOD:01423"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:00649"}],"interesting_parent_ids":["MOD:00649"],"is_obsolete":false,"name":"S-palmitoleylated residue","termid":"MOD:02002"}


id: GO:0060589
data:
  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id: PBO:0075639
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  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small proline rich protein 4","termid":"PBO:0075639"}


id: PR:O60093
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  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- ber1 gene.","definition_xrefs":["PRO:DNx","UniProtKB:O60093"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SRR1-like protein (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC14C8.13","synonyms":[{"name":"Spom972h-ber1","type":"exact"}],"termid":"PR:O60093"}


id: PBO:0089835
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  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"BRCT domain protein Brc1-like","termid":"PBO:0089835"}


id: PBO:0059211
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial rRNA methyltransferase 3","termid":"PBO:0059211"}


id: MOD:00882
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  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-serine residue to S-(2-aminoethyl)cysteine.","definition_xrefs":["Unimod:472#S","DeltaMass:171","PubMed:12923550"],"direct_ancestors":[{"relation_name":"is_a","term_name":"modified L-serine residue","termid":"MOD:00916"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"S-(2-aminoethyl)cysteine (Ser)","synonyms":[{"name":"AEC-MAEC","type":"related"},{"name":"Aminoethyl Cysteinyl (AECys)","type":"exact"},{"name":"aminoethylcysteine","type":"related"}],"termid":"MOD:00882"}


id: PBO:0083064
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Dihydroorotate dehydrogenase; catalyzes the fourth enzymatic step in the de novo biosynthesis of pyrimidines, converting dihydroorotic acid into orotic acid","termid":"PBO:0083064"}


id: PBO:0076660
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  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"T-box transcription factor 22","termid":"PBO:0076660"}


id: PBO:0090076
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  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glycerol-3-phosphate O-acyltransferase Sct1/Gpt1-like","termid":"PBO:0090076"}


id: PBO:0078916
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  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-Gln (anticodon TTG) 5-1","termid":"PBO:0078916"}


id: GO:0031580
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  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process that establishes the spatial arrangement of membrane rafts within a cellular membrane.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"membrane raft organization","termid":"GO:0031579"},{"relation_name":"is_a","term_name":"membrane raft localization","termid":"GO:0051665"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0061024"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0051179"}],"interesting_parent_ids":["GO:0008150","GO:0061024","GO:0051179"],"is_obsolete":false,"name":"membrane raft distribution","synonyms":[{"name":"lipid raft distribution","type":"exact"}],"termid":"GO:0031580"}


id: PBO:0064598
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  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"POU class 2 homeobox 1","termid":"PBO:0064598"}


id: GO:0035283
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  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Division of the central nervous system into a series of semi-repetitive parts or segments.","definition_xrefs":["GOC:bf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"segmentation","termid":"GO:0035282"},{"relation_name":"part_of","term_name":"central nervous system development","termid":"GO:0007417"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"central nervous system segmentation","termid":"GO:0035283"}


id: GO:0043441
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  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of acetoacetic acid, a beta-keto acid of the keto acid group, empirical formula is C4H6O3 or CH3COCH2COOH.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"acetoacetic acid metabolic process","termid":"GO:0043438"},{"relation_name":"is_a","term_name":"ketone body biosynthetic process","termid":"GO:0046951"},{"relation_name":"is_a","term_name":"short-chain fatty acid biosynthetic process","termid":"GO:0051790"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006091"},{"rel_name":"is_a","termid":"GO:0006629"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0006091","GO:0008150","GO:0006629","GO:0044281"],"is_obsolete":false,"name":"acetoacetic acid biosynthetic process","synonyms":[{"name":"acetoacetic acid anabolism","type":"exact"},{"name":"acetoacetic acid biosynthesis","type":"exact"},{"name":"acetoacetic acid formation","type":"exact"},{"name":"acetoacetic acid synthesis","type":"exact"}],"termid":"GO:0043441"}


id: GO:0042263
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Combining with neuropeptide F and transmitting the signal within the cell to initiate a change in cell activity. Neuropeptide F is an arthropod peptide of more than 28 residues (typically 28-45) with a consensus C-terminal RxRFamide (commonly RPRFa, but also RVRFa.","definition_xrefs":["GOC:bf","PMID:21440021","GOC:ma"],"direct_ancestors":[{"relation_name":"is_a","term_name":"neuropeptide receptor activity","termid":"GO:0008188"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0038023"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0038023","GO:0003674"],"is_obsolete":false,"name":"neuropeptide F receptor activity","synonyms":[{"name":"NPF receptor activity","type":"exact"}],"termid":"GO:0042263"}


id: GO:2000111
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  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of macrophage apoptotic process.","definition_xrefs":["GOC:BHF","GOC:mtg_apoptosis"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of myeloid cell apoptotic process","termid":"GO:0033034"},{"relation_name":"is_a","term_name":"positive regulation of leukocyte apoptotic process","termid":"GO:2000108"},{"relation_name":"is_a","term_name":"regulation of macrophage apoptotic process","termid":"GO:2000109"},{"relation_name":"positively_regulates","term_name":"macrophage apoptotic process","termid":"GO:0071888"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of macrophage apoptotic process","synonyms":[{"name":"positive regulation of AICD","type":"related"},{"name":"positive regulation of activation-induced cell death","type":"related"},{"name":"positive regulation of macrophage apoptosis","type":"narrow"}],"termid":"GO:2000111"}


id: GO:0048468
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Cell development start once cell commitment has taken place.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"anatomical structure development","termid":"GO:0048856"},{"relation_name":"is_a","term_name":"cellular developmental process","termid":"GO:0048869"},{"relation_name":"part_of","term_name":"cell differentiation","termid":"GO:0030154"}],"gene_count":56,"genes_by_uniquename":{"SJAG_00114":null,"SJAG_00405":null,"SJAG_00486":null,"SJAG_00514":null,"SJAG_00663":null,"SJAG_00821":null,"SJAG_00826":null,"SJAG_00971":null,"SJAG_00974":null,"SJAG_00993":null,"SJAG_01321":null,"SJAG_01483":null,"SJAG_01531":null,"SJAG_01662":null,"SJAG_01769":null,"SJAG_02169":null,"SJAG_02241":null,"SJAG_02248":null,"SJAG_02320":null,"SJAG_02392":null,"SJAG_02529":null,"SJAG_02566":null,"SJAG_02712":null,"SJAG_02736":null,"SJAG_03013":null,"SJAG_03057":null,"SJAG_03090":null,"SJAG_03250":null,"SJAG_03483":null,"SJAG_03536":null,"SJAG_03557":null,"SJAG_03581":null,"SJAG_03587":null,"SJAG_03688":null,"SJAG_03723":null,"SJAG_03746":null,"SJAG_03915":null,"SJAG_04010":null,"SJAG_04080":null,"SJAG_04140":null,"SJAG_04184":null,"SJAG_04232":null,"SJAG_04236":null,"SJAG_04238":null,"SJAG_04271":null,"SJAG_04275":null,"SJAG_04470":null,"SJAG_04483":null,"SJAG_04615":null,"SJAG_04781":null,"SJAG_04853":null,"SJAG_04859":null,"SJAG_04868":null,"SJAG_04901":null,"SJAG_04922":null,"SJAG_05309":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cell development","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"terminal differentiation","type":"related"}],"termid":"GO:0048468","terms_by_termid":{"GO:0030097":null,"GO:0030437":null,"GO:0030476":null,"GO:0031321":null,"GO:0031322":null,"GO:0032120":null,"GO:0034217":null,"GO:0034307":null,"GO:0034412":null,"GO:0034413":null,"GO:0045773":null,"GO:0048671":null,"GO:0051517":null,"GO:0051519":null,"GO:0070583":null,"GO:0070591":null,"GO:0075296":null,"GO:0075297":null,"GO:1903024":null}}


id: PBO:0066213
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA binding motif protein 22 pseudogene 6","termid":"PBO:0066213"}


id: PBO:0041729
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CAMK2G antisense RNA 1","termid":"PBO:0041729"}


id: GO:0016865
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. A grouping term for intramolecular oxidoreductases that cannot be more accurately categorized.","definition_xrefs":["GOC:ai"],"gene_count":0,"genotype_count":0,"name":"obsolete intramolecular oxidoreductase activity, other intramolecular oxidoreductases (obsolete GO:0016865)","synonyms":[{"name":"intramolecular isomerase activity, other intramolecular oxidoreductases","type":"exact"},{"name":"intramolecular oxidoreductase activity, other intramolecular oxidoreductases","type":"exact"}],"termid":"GO:0016865"}


id: PBO:0086787
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Putative protein of unknown function; the authentic, non-tagged protein is detected in highly purified mitochondria in high-throughput studies; induced by treatment with 8-methoxypsoralen and UVA irradiation","termid":"PBO:0086787"}


id: GO:1990661
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A protein complex composed of a S100A8 dimer and capable of binding to toll-like receptor 4 (TLR4).","definition_xrefs":["GOC:bhm","PMID:25417112"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein-containing complex","termid":"GO:0032991"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0032991","GO:0005575"],"is_obsolete":false,"name":"S100A8 complex","synonyms":[{"name":"S100A8 homodimer","type":"exact"}],"termid":"GO:1990661"}


id: GO:1900025
data:
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id: GO:0046974
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id: PBO:0005140
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id: PBO:0078891
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id: GO:0022890
data:
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id: PBO:0089858
data:
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id: GO:1903378
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of oxidative stress-induced neuron intrinsic apoptotic signaling pathway.","definition_xrefs":["GOC:TermGenie","GO_REF:0000058","GOC:bf","GOC:PARL"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of neuron apoptotic process","termid":"GO:0043525"},{"relation_name":"is_a","term_name":"positive regulation of oxidative stress-induced intrinsic apoptotic signaling pathway","termid":"GO:1902177"},{"relation_name":"is_a","term_name":"regulation of oxidative stress-induced neuron intrinsic apoptotic signaling pathway","termid":"GO:1903376"},{"relation_name":"positively_regulates","term_name":"neuron intrinsic apoptotic signaling pathway in response to oxidative stress","termid":"GO:0036480"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"positively_regulates","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"positive regulation of oxidative stress-induced neuron intrinsic apoptotic signaling pathway","synonyms":[{"name":"activation of neuron apoptosis in response to oxidative stress","type":"related"},{"name":"activation of neuron intrinsic apoptotic signaling pathway in response to oxidative stress","type":"narrow"},{"name":"positive regulation of neuron apoptosis in response to oxidative stress","type":"related"},{"name":"positive regulation of neuron intrinsic apoptotic signaling pathway in response to oxidative stress","type":"exact"},{"name":"up regulation of neuron apoptosis in response to oxidative stress","type":"related"},{"name":"up regulation of neuron intrinsic apoptotic signaling pathway in response to oxidative stress","type":"exact"},{"name":"up-regulation of neuron apoptosis in response to oxidative stress","type":"related"},{"name":"up-regulation of neuron intrinsic apoptotic signaling pathway in response to oxidative stress","type":"exact"},{"name":"upregulation of neuron apoptosis in response to oxidative stress","type":"related"},{"name":"upregulation of neuron intrinsic apoptotic signaling pathway in response to oxidative stress","type":"exact"}],"termid":"GO:1903378"}


id: PATO:0000596
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  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A volume which is relatively low.","definition_xrefs":["PATOC:GVG"],"direct_ancestors":[{"relation_name":"decreased_in_magnitude_relative_to","term_name":"normal","termid":"PATO:0000461"},{"relation_name":"is_a","term_name":"decreased size","termid":"PATO:0000587"},{"relation_name":"is_a","term_name":"volume","termid":"PATO:0000918"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"decreased volume","synonyms":[{"name":"low volume","type":"exact"},{"name":"small volume","type":"related"}],"termid":"PATO:0000596"}


id: GO:0030422
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id: PBO:0081540
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id: PBO:0051519
data:
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id: GO:0039557
data:
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id: PBO:0069328
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 587, pseudogene","termid":"PBO:0069328"}


id: PBO:0076176
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sulfotransferase family 1D member 1 pseudogene 2","termid":"PBO:0076176"}


id: PR:O59811
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A zinc finger protein 622 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO04600","PANTHER:PTHR13182:SF7","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cytoplasmic 60S subunit biogenesis factor SPCC550.15c (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC550.15c","secondary_identifiers":["UniProtKB:O59811"],"synonyms":[{"name":"Spom972h-ZNF622","type":"exact"},{"name":"pre-60S factor REI1 homolog (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:O59811"}


id: GO:0042693
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which the cellular identity of muscle cells is acquired and determined.","definition_xrefs":["CL:0000187","GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell fate commitment","termid":"GO:0045165"},{"relation_name":"part_of","term_name":"muscle cell differentiation","termid":"GO:0042692"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"muscle cell fate commitment","termid":"GO:0042693"}


id: PBO:0085230
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Part of the heteromeric co-chaperone GimC/prefoldin complex; complex promotes efficient protein folding","termid":"PBO:0085230"}


id: GO:0061266
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which relatively unspecialized cells acquire specialized structural and/or functional features that characterize the interstitial fibroblasts of the mesonephros as it progresses from its formation to the mature state.","definition_xrefs":["GOC:mtg_kidney_jan10"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell differentiation involved in mesonephros development","termid":"GO:0061208"},{"relation_name":"is_a","term_name":"kidney interstitial fibroblast differentiation","termid":"GO:0072071"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"mesonephric interstitial fibroblast differentiation","synonyms":[{"name":"mesonephros interstitial cell differentiation","type":"exact"}],"termid":"GO:0061266"}


id: GO:0110137
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of imaginal disc-derived leg joint morphogenesis, the process in which the anatomical structure of the imaginal disc-derived leg joint is generated and organized.","definition_xrefs":["GOC:ha","PMID:25329825"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of anatomical structure morphogenesis","termid":"GO:0022603"},{"relation_name":"regulates","term_name":"imaginal disc-derived leg morphogenesis","termid":"GO:0007480"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of imaginal disc-derived leg joint morphogenesis","termid":"GO:0110137"}


id: PBO:0032714
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_error-free_translesion_synthesis","termid":"PBO:0032714"}


id: PBO:0086678
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Putative protein of unknown function; identified by gene-trapping, microarray-based expression analysis, and genome-wide homology searching","termid":"PBO:0086678"}


id: PBO:0044509
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cytohesin 1 interacting protein","termid":"PBO:0044509"}


id: PBO:0036017
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_histone_H3-K56_acetylation_during_vegetative_growth","termid":"PBO:0036017"}


id: PBO:0043129
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CIBAR1 pseudogene 1","termid":"PBO:0043129"}


id: PBO:0036454
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ABC1 kinase family ubiquinone biosynthesis ATPase Abc1/Coq8","termid":"PBO:0036454"}


id: PBO:0004908
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sporulation specific protein Spo2","termid":"PBO:0004908"}


id: GO:0036148
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Remodeling the acyl chains of phosphatidylglycerol, through sequential deacylation and re-acylation reactions, to generate phosphatidylglycerol containing different types of fatty acid acyl chains.","definition_xrefs":["PMID:18458083","GOC:mw","PMID:15485873"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phosphatidylglycerol metabolic process","termid":"GO:0046471"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006629"}],"interesting_parent_ids":["GO:0008150","GO:0006629"],"is_obsolete":false,"name":"phosphatidylglycerol acyl-chain remodeling","synonyms":[{"name":"phosphatidylglycerol acyl-chain remodelling","type":"exact"}],"termid":"GO:0036148"}


id: PBO:0030283
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_sulfide:quinone_oxidoreductase_activity","termid":"PBO:0030283"}


id: PBO:0064317
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"phospholipid phosphatase 6","termid":"PBO:0064317"}


id: PBO:0029044
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_growth_on_arsenate","termid":"PBO:0029044"}


id: PBO:0052678
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"keratin 8 pseudogene 46","termid":"PBO:0052678"}


id: GO:0008677
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: (R)-pantoate + NADP+ = 2-dehydropantoate + H+ + NADPH.","definition_xrefs":["EC:1.1.1.169","RHEA:16233"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor","termid":"GO:0016616"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0016491","GO:0003824"],"is_obsolete":false,"name":"2-dehydropantoate 2-reductase activity","secondary_identifiers":["MetaCyc:2-DEHYDROPANTOATE-REDUCT-RXN","KEGG_REACTION:R02472"],"synonyms":[{"name":"(R)-pantoate:NADP+ 2-oxidoreductase activity","type":"related"},{"name":"2-ketopantoate reductase activity","type":"related"},{"name":"2-ketopantoic acid reductase activity","type":"related"},{"name":"2-oxopantoate reductase activity","type":"related"},{"name":"KPA reductase activity","type":"related"},{"name":"ketopantoate reductase activity","type":"related"},{"name":"ketopantoic acid reductase activity","type":"related"}],"termid":"GO:0008677"}


id: GO:0006610
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The directed movement of a ribosomal protein from the cytoplasm into the nucleus, across the nuclear membrane. At least some ribosomal proteins, including rpl12, uses the importin 11 pathway as a major route into the nucleus.","definition_xrefs":["GOC:ai","PMID:11809816"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein import into nucleus","termid":"GO:0006606"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0006913"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0051179","GO:0008150","GO:0006810","GO:0006913"],"is_obsolete":false,"name":"ribosomal protein import into nucleus","synonyms":[{"name":"ribosomal protein import into cell nucleus","type":"exact"},{"name":"ribosomal protein transport from cytoplasm to nucleus","type":"exact"},{"name":"ribosomal protein-nucleus import","type":"exact"}],"termid":"GO:0006610"}


id: PBO:0078463
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-His (anticodon GTG) 1-1","termid":"PBO:0078463"}


id: PBO:0091185
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ATP synthase F0 subunit 9","termid":"PBO:0091185"}


id: PBO:0077944
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-Ala (anticodon AGC) 4-1","termid":"PBO:0077944"}


id: PBO:0057170
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 323a","termid":"PBO:0057170"}


id: GO:0072703
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a methyl methanesulfonate (MMS) stimulus.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular response to organic substance","termid":"GO:0071310"},{"relation_name":"is_a","term_name":"response to methyl methanesulfonate","termid":"GO:0072702"},{"relation_name":"is_a","term_name":"cellular response to oxygen-containing compound","termid":"GO:1901701"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cellular response to methyl methanesulfonate","synonyms":[{"name":"cellular response to MMS","type":"exact"}],"termid":"GO:0072703"}


id: PBO:0028286
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_mitotic_G2_DNA_damage_checkpoint","termid":"PBO:0028286"}


id: PBO:0065590
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"prothymosin alpha pseudogene 6","termid":"PBO:0065590"}


id: GO:0060629
data:
  {"annotated_genes":["SJAG_03048","SJAG_02104","SJAG_01082","SJAG_04457"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[111146],"is_not":false,"summary":null,"term":"GO:0060629"},{"annotations":[89931,106656],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0090006"},{"annotations":[98653],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0062123"}]},"cv_name":"biological_process","definition":"Any process that modulates the rate, frequency, or extent of homologous chromosome segregation, the cell cycle process in which replicated homologous chromosomes are organized and then physically separated and apportioned to two sets during the first division of the meiotic cell cycle. Each replicated chromosome, composed of two sister chromatids, aligns at the cell equator, paired with its homologous partner; this pairing off, referred to as synapsis, permits genetic recombination. One homolog (both sister chromatids) of each morphologic type goes into each of the resulting chromosome sets.","definition_xrefs":["GOC:dph","GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of chromosome segregation","termid":"GO:0051983"},{"relation_name":"is_a","term_name":"regulation of reproductive process","termid":"GO:2000241"},{"relation_name":"regulates","term_name":"homologous chromosome segregation","termid":"GO:0045143"}],"gene_count":4,"genes_by_uniquename":{"SJAG_01082":null,"SJAG_02104":null,"SJAG_03048":null,"SJAG_04457":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0007049"}],"interesting_parent_ids":["GO:0007049","GO:0008150"],"is_obsolete":false,"name":"regulation of homologous chromosome segregation","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0060629","terms_by_termid":{"GO:0060629":null,"GO:0062123":null,"GO:0090006":null}}


id: GO:0000041
data:
  {"annotated_genes":["SJAG_04675","SJAG_04096","SJAG_00547","SJAG_04246","SJAG_04867","SJAG_04743","SJAG_02968","SJAG_01803","SJAG_00222","SJAG_01119","SJAG_04737","SJAG_03528","SJAG_00328","SJAG_02834","SJAG_02735","SJAG_03850","SJAG_01007","SJAG_03231","SJAG_03497","SJAG_04185","SJAG_01990","SJAG_04830","SJAG_02399","SJAG_02473","SJAG_04260","SJAG_02457","SJAG_03079","SJAG_01078","SJAG_04677","SJAG_01493"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[114905],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0036249"},{"annotations":[63911],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0070574"},{"annotations":[104275],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0060003"},{"annotations":[104276,77461],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0015677"},{"annotations":[83753,111232],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0098705"},{"annotations":[97725],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0097430"},{"annotations":[100952,62148,100102],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0035434"},{"annotations":[101045],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006825"},{"annotations":[94235,70347,110416],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0048250"},{"annotations":[88416,88412],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0098711"},{"annotations":[100112,74914,109361,109817],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0034755"},{"annotations":[85138],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0140466"},{"annotations":[70690,105103,100113,91414],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0071421"},{"annotations":[112686],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0098716"},{"annotations":[88417,109362],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0033215"},{"annotations":[107273,107274],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0044718"},{"annotations":[109363],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0015891"},{"annotations":[107275,107276],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0033214"},{"annotations":[110975],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0140147"},{"annotations":[100501,109818],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0071578"},{"annotations":[89820,89821],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0140209"},{"annotations":[100644,74046],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1904257"},{"annotations":[77177],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0071577"}]},"cv_name":"biological_process","definition":"The directed movement of transition metal ions into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. A transition metal is an element whose atom has an incomplete d-subshell of extranuclear electrons, or which gives rise to a cation or cations with an incomplete d-subshell. Transition metals often have more than one valency state. Biologically relevant transition metals include vanadium, manganese, iron, copper, cobalt, nickel, molybdenum and silver.","definition_xrefs":["ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"metal ion transport","termid":"GO:0030001"}],"gene_count":30,"genes_by_uniquename":{"SJAG_00222":null,"SJAG_00328":null,"SJAG_00547":null,"SJAG_01007":null,"SJAG_01078":null,"SJAG_01119":null,"SJAG_01493":null,"SJAG_01803":null,"SJAG_01990":null,"SJAG_02399":null,"SJAG_02457":null,"SJAG_02473":null,"SJAG_02735":null,"SJAG_02834":null,"SJAG_02968":null,"SJAG_03079":null,"SJAG_03231":null,"SJAG_03497":null,"SJAG_03528":null,"SJAG_03850":null,"SJAG_04096":null,"SJAG_04185":null,"SJAG_04246":null,"SJAG_04260":null,"SJAG_04675":null,"SJAG_04677":null,"SJAG_04737":null,"SJAG_04743":null,"SJAG_04830":null,"SJAG_04867":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006810","GO:0051179","GO:0008150"],"is_obsolete":false,"name":"transition metal ion transport","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000033":null,"GO_REF:0000107":null,"GO_REF:0000108":null},"synonyms":[{"name":"transition metal transport","type":"exact"}],"termid":"GO:0000041","terms_by_termid":{"GO:0006825":null,"GO:0015677":null,"GO:0015891":null,"GO:0033214":null,"GO:0033215":null,"GO:0034755":null,"GO:0035434":null,"GO:0036249":null,"GO:0044718":null,"GO:0048250":null,"GO:0060003":null,"GO:0070574":null,"GO:0071421":null,"GO:0071577":null,"GO:0071578":null,"GO:0097430":null,"GO:0098705":null,"GO:0098711":null,"GO:0098716":null,"GO:0140147":null,"GO:0140209":null,"GO:0140466":null,"GO:1904257":null}}


id: PBO:0084221
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Hsp40 chaperone with a role in SUMO-mediated protein degradation; works in concert with Hsp70 and Hsp110 (Sse1p) to promote disaggregation of intranuclear protein inclusions; competes with Hsp104 in disaggregation, supporting turnover instead of refolding; member of DnaJ-like family, conserved across eukaryotes; overexpression interferes with propagation of the [Psi+] prion; forms nuclear foci upon DNA replication stress","termid":"PBO:0084221"}


id: PBO:0062771
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 52 subfamily Y member 1 pseudogene","termid":"PBO:0062771"}


id: GO:0030133
data:
  {"annotated_genes":["SJAG_02349","SJAG_02539","SJAG_04023","SJAG_01189","SJAG_05345","SJAG_01633","SJAG_00557","SJAG_04517","SJAG_02529","SJAG_05344","SJAG_00916","SJAG_04565","SJAG_02282","SJAG_00906","SJAG_01809","SJAG_00430","SJAG_03558","SJAG_02240","SJAG_01309","SJAG_04513","SJAG_04609","SJAG_00072","SJAG_00379","SJAG_01939","SJAG_03153","SJAG_04509","SJAG_00284","SJAG_02368","SJAG_00669","SJAG_03907","SJAG_03915"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[74127,115870],"is_not":false,"summary":null,"term":"GO:0030133"},{"annotations":[97363,76652,109591,109348],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0030121"},{"annotations":[90961,109472],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0030130"},{"annotations":[74926,77283,72756,71315,71336,75508,74179,75950,91604,74515],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0030127"},{"annotations":[110822,97313,70485,73422,75322],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0012507"},{"annotations":[83694,112120],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0070382"},{"annotations":[71955,76349],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0034044"},{"annotations":[110563,78780],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0070319"},{"annotations":[96389,97073],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0030140"}]},"cv_name":"cellular_component","definition":"Any of the vesicles of the constitutive secretory pathway, which carry cargo from the endoplasmic reticulum to the Golgi, between Golgi cisternae, from the Golgi to the ER (retrograde transport) or to destinations within or outside the cell.","definition_xrefs":["PMID:22160157","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cytoplasmic vesicle","termid":"GO:0031410"},{"relation_name":"part_of","term_name":"endomembrane system","termid":"GO:0012505"}],"gene_count":31,"genes_by_uniquename":{"SJAG_00072":null,"SJAG_00284":null,"SJAG_00379":null,"SJAG_00430":null,"SJAG_00557":null,"SJAG_00669":null,"SJAG_00906":null,"SJAG_00916":null,"SJAG_01189":null,"SJAG_01309":null,"SJAG_01633":null,"SJAG_01809":null,"SJAG_01939":null,"SJAG_02240":null,"SJAG_02282":null,"SJAG_02349":null,"SJAG_02368":null,"SJAG_02529":null,"SJAG_02539":null,"SJAG_03153":null,"SJAG_03558":null,"SJAG_03907":null,"SJAG_03915":null,"SJAG_04023":null,"SJAG_04509":null,"SJAG_04513":null,"SJAG_04517":null,"SJAG_04565":null,"SJAG_04609":null,"SJAG_05344":null,"SJAG_05345":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"is_a","termid":"GO:0031410"}],"interesting_parent_ids":["GO:0031410","GO:0005737","GO:0005575"],"is_obsolete":false,"name":"transport vesicle","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null,"PMID:30726171":null},"secondary_identifiers":["NIF_Subcellular:sao885490876"],"synonyms":[{"name":"Golgi to vacuole transport vesicle","type":"narrow"},{"name":"Golgi-vacuole transport vesicle","type":"narrow"},{"name":"constitutive secretory pathway transport vesicle","type":"exact"},{"name":"secretory vesicle","type":"related"}],"termid":"GO:0030133","terms_by_termid":{"GO:0012507":null,"GO:0030121":null,"GO:0030127":null,"GO:0030130":null,"GO:0030133":null,"GO:0030140":null,"GO:0034044":null,"GO:0070319":null,"GO:0070382":null}}


id: PBO:0062819
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"osteoclast associated Ig-like receptor","termid":"PBO:0062819"}


id: GO:0010868
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that decreases the rate, frequency, or extent of triglyceride biosynthesis. Triglyceride biosynthesis is the collection of chemical reactions and pathways resulting in the formation of triglyceride, any triester of glycerol.","definition_xrefs":["GOC:BHF","GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of triglyceride biosynthetic process","termid":"GO:0010866"},{"relation_name":"is_a","term_name":"negative regulation of cellular biosynthetic process","termid":"GO:0031327"},{"relation_name":"is_a","term_name":"negative regulation of lipid biosynthetic process","termid":"GO:0051055"},{"relation_name":"is_a","term_name":"negative regulation of triglyceride metabolic process","termid":"GO:0090209"},{"relation_name":"negatively_regulates","term_name":"triglyceride biosynthetic process","termid":"GO:0019432"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0006629"},{"rel_name":"negatively_regulates","termid":"GO:0006629"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0006629"],"is_obsolete":false,"name":"negative regulation of triglyceride biosynthetic process","synonyms":[{"name":"negative regulation of triacylglycerol biosynthetic process","type":"exact"}],"termid":"GO:0010868"}


id: PBO:0031745
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_flocculation_(obsolete_FYPO:0000463)","termid":"PBO:0031745"}


id: GO:0070557
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id: GO:0070024
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A protein complex that contains the cell surface signaling molecule CD19, the Ras guanine nucleotide exchange factor Vav, and the regulatory subunit alpha of phosphatidylinositol 3-kinase (PI3K).","definition_xrefs":["PMID:7528218"],"direct_ancestors":[{"relation_name":"is_a","term_name":"plasma membrane protein complex","termid":"GO:0098797"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0005886"}],"interesting_parent_ids":["GO:0005575","GO:0032991","GO:0005886"],"is_obsolete":false,"name":"CD19-Vav-PIK3R1 complex","synonyms":[{"name":"CD19-Vav-PI 3-kinase (p85 subunit) complex","type":"exact"}],"termid":"GO:0070024"}


id: PBO:0000545
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase family or domain","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"bZIP (basic leucine zipper) transcription factor family","termid":"PBO:0000545"}


id: PBO:0063476
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protein disulfide isomerase family A member 4","termid":"PBO:0063476"}


id: PBO:0011505
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"anthranilate synthase component II, multifunctional enzyme (predicted)","termid":"PBO:0011505"}


id: PBO:0060131
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MT-ND6 pseudogene 32","termid":"PBO:0060131"}


id: GO:0008193
data:
  {"annotated_genes":["SJAG_04233"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[72847],"is_not":false,"summary":null,"term":"GO:0008193"}]},"cv_name":"molecular_function","definition":"Catalysis of the posttranscriptional addition of a guanyl residue to the 5' end of a tRNA molecule; observed for His tRNAs.","definition_xrefs":["PMID:1660461"],"direct_ancestors":[{"relation_name":"is_a","term_name":"RNA guanylyltransferase activity","termid":"GO:0008192"},{"relation_name":"is_a","term_name":"catalytic activity, acting on a tRNA","termid":"GO:0140101"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04233":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0140098"},{"rel_name":"is_a","termid":"GO:0140101"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0016779"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016779","GO:0140101","GO:0016740","GO:0003674","GO:0003824","GO:0140098"],"is_obsolete":false,"name":"tRNA guanylyltransferase activity","references_by_uniquename":{"GO_REF:0000033":null},"secondary_identifiers":["EC:2.7.7.79","RHEA:54564"],"termid":"GO:0008193","terms_by_termid":{"GO:0008193":null}}


id: PBO:0018096
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"borate transmembrane transporter (predicted)","termid":"PBO:0018096"}


id: GO:0021865
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The mitotic division of a radial glial cell giving rise to two new radial glial cells in the forebrain.","definition_xrefs":["GO_REF:0000021","GOC:cls","GOC:dgh","GOC:dph","GOC:jid","PMID:16226447"],"gene_count":0,"genotype_count":0,"name":"obsolete symmetric radial glial cell division in forebrain (obsolete GO:0021865)","termid":"GO:0021865"}


id: PBO:0062428
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 7 subfamily E member 89 pseudogene","termid":"PBO:0062428"}


id: PBO:0084309
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Isoamyl acetate-hydrolyzing esterase; required in balance with alcohol acetyltransferase to maintain optimal amounts of isoamyl acetate, which is particularly important in sake brewing","termid":"PBO:0084309"}


id: GO:0031246
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"OBSOLETE. The component of the cell outer membrane consisting of the gene products that that penetrate the periplasmic side of the cell outer membrane only, either directly or via some covalently attached hydrophobic anchor.","definition_xrefs":["GOC:mah","GOC:dos","GOC:mtg_sensu"],"gene_count":0,"genotype_count":0,"name":"obsolete intrinsic component of periplasmic side of cell outer membrane (obsolete GO:0031246)","synonyms":[{"name":"intrinsic to external side of cell outer membrane","type":"narrow"},{"name":"intrinsic to internal leaflet of cell outer membrane","type":"exact"},{"name":"intrinsic to internal side of cell outer membrane","type":"exact"},{"name":"intrinsic to internal side of outer membrane","type":"exact"}],"termid":"GO:0031246"}


id: FYPO:0000046
data:
  {"alleles_by_uniquename":{"SJAG_00266:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_00266","name":"atf1delta","uniquename":"SJAG_00266:allele-1"},"SJAG_00409:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_00409","name":"gpd1delta","uniquename":"SJAG_00409:allele-1"},"SJAG_00514:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_00514","name":"scd1delta","uniquename":"SJAG_00514:allele-1"},"SJAG_01794:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_01794","name":"scd2delta","uniquename":"SJAG_01794:allele-1"},"SJAG_01946:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_01946","name":"cem1delta","uniquename":"SJAG_01946:allele-1"},"SJAG_02527:allele-1":{"allele_type":"disruption","description":"RNA sequencing revealed that only the 5' end of the disrupted allele showed low RNA expression and coverage","gene_uniquename":"SJAG_02527","name":"lig4::KanMX6","uniquename":"SJAG_02527:allele-1"},"SJAG_02592:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_02592","name":"sty1delta","uniquename":"SJAG_02592:allele-1"},"SJAG_03198:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_03198","name":"oar2delta","uniquename":"SJAG_03198:allele-1"},"SJAG_03198:allele-2":{"allele_type":"amino_acid_mutation","description":"Y189D cold sensitive","gene_uniquename":"SJAG_03198","name":"oar2-51","uniquename":"SJAG_03198:allele-2"},"SJAG_03198:allele-3":{"allele_type":"amino_acid_mutation","description":"R72A,L75A,R106A,L109A","gene_uniquename":"SJAG_03198","name":"oar2-dm12","synonyms":[{"name":"destruction box mutations","reference":"PMID:23786411","type":"exact"}],"uniquename":"SJAG_03198:allele-3"},"SJAG_03453:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_03453","name":"ras1delta","uniquename":"SJAG_03453:allele-1"},"SJAG_04464:allele-1":{"allele_type":"amino_acid_mutation","description":"R152C","gene_uniquename":"SJAG_04464","name":"pim1-R152C","synonyms":[{"name":"Inferred CDK-phospho-mimic mutation","reference":"PMID:28954740","type":"exact"}],"uniquename":"SJAG_04464:allele-1"},"SJAG_04697:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_04697","name":"gms1delta","uniquename":"SJAG_04697:allele-1"},"SJAG_04703:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_04703","name":"for3delta","uniquename":"SJAG_04703:allele-1"},"SJAG_05207:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_05207","name":"cmp7delta","uniquename":"SJAG_05207:allele-1"}},"annotation_feature_type":"genotype","cv_annotations":{"single_locus_phenotype":[{"annotations":[115995,116007],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0004481"},{"annotations":[115959,116089],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0000082"},{"annotations":[116194,116196,116210,116112,116195],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0000080"},{"annotations":[116032,115873,116040,116227,116036],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0001355"},{"annotations":[116127],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0001408"}]},"cv_name":"fission_yeast_phenotype","definition":"A cell population phenotype in which cell population growth is decreased relative to normal. Decreased growth may reflect a reduced growth rate (i.e. slower growth), growth that occurs to a lesser extent than normal, or both. 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sequencing revealed that only the 5' end of the disrupted allele showed low RNA expression and coverage)[Knockdown]","display_uniquename":"lig4::KanMX6-RNA_sequencing_revealed_that_only_the_5'_end_of_the_disrupted_allele_showed_low_RNA_expression_and_coverage-disruption-expression-knockdown","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_02527:allele-1","expression":"Knockdown"}]}]},"oar2-51-Y189D_cold_sensitive-amino_acid_mutation-expression-overexpression":{"display_name":"oar2-51(Y189D cold sensitive)[Overexpression]","display_uniquename":"oar2-51-Y189D_cold_sensitive-amino_acid_mutation-expression-overexpression","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03198:allele-2","expression":"Overexpression"}]}]},"oar2-dm12-R72A,L75A,R106A,L109A-amino_acid_mutation-expression-overexpression":{"display_name":"oar2-dm12(R72A,L75A,R106A,L109A aa)[Overexpression]","display_uniquename":"oar2-dm12-R72A,L75A,R106A,L109A-amino_acid_mutation-expression-overexpression","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03198:allele-3","expression":"Overexpression"}]}]},"oar2delta":{"display_name":"oar2delta","display_uniquename":"oar2delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03198:allele-1","expression":"Null"}]}]},"pim1-R152C-R152C-amino_acid_mutation-expression-not_assayed_or_wild_type":{"display_name":"pim1-R152C(aa)","display_uniquename":"pim1-R152C-R152C-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04464:allele-1","expression":"Not assayed or wild type"}]}]},"ras1delta":{"display_name":"ras1delta","display_uniquename":"ras1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03453:allele-1","expression":"Null"}]}]},"scd1delta":{"display_name":"scd1delta","display_uniquename":"scd1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_00514:allele-1","expression":"Null"}]}]},"scd2delta":{"display_name":"scd2delta","display_uniquename":"scd2delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01794:allele-1","expression":"Null"}]}]},"sty1delta":{"display_name":"sty1delta","display_uniquename":"sty1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_02592:allele-1","expression":"Null"}]}]}},"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000139"},{"rel_name":"is_a","termid":"FYPO:0000003"},{"rel_name":"is_a","termid":"FYPO:0002057"},{"rel_name":"is_a","termid":"FYPO:0002058"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0000139","FYPO:0000003","FYPO:0002057","FYPO:0002058","FYPO:0005447","FYPO:0001985"],"is_obsolete":false,"name":"decreased cell population growth","references_by_uniquename":{"PMID:23786411":null,"PMID:28954740":null,"PMID:29566183":null,"PMID:30726171":null,"PMID:31150379":null,"PMID:32243490":null,"PMID:36058798":null,"PMID:37164017":null,"PMID:37233261":null},"secondary_identifiers":["FYPO:0000222"],"single_locus_annotated_genes":["SJAG_03453","SJAG_00409","SJAG_00514","SJAG_02527","SJAG_03198","SJAG_04697","SJAG_01946","SJAG_00266","SJAG_01794","SJAG_04703","SJAG_02592","SJAG_04464","SJAG_05207"],"single_locus_genotype_uniquenames":["gpd1delta","gms1delta","lig4::KanMX6-RNA_sequencing_revealed_that_only_the_5'_end_of_the_disrupted_allele_showed_low_RNA_expression_and_coverage-disruption-expression-knockdown","scd2delta","cem1delta","sty1delta","atf1delta","scd1delta","pim1-R152C-R152C-amino_acid_mutation-expression-not_assayed_or_wild_type","oar2-51-Y189D_cold_sensitive-amino_acid_mutation-expression-overexpression","oar2-dm12-R72A,L75A,R106A,L109A-amino_acid_mutation-expression-overexpression","oar2delta","cmp7delta","for3delta","ras1delta"],"synonyms":[{"name":"aerobic growth defects","type":"related"},{"name":"decreased aerobic cell population growth","type":"narrow"},{"name":"decreased growth","type":"broad"},{"name":"reduced aerobic cell population growth","type":"narrow"},{"name":"reduced cell population growth","type":"exact"},{"name":"slow aerobic cell population growth","type":"narrow"}],"termid":"FYPO:0000046","terms_by_termid":{"FYECO:0000004":null,"FYECO:0000005":null,"FYECO:0000006":null,"FYECO:0000117":null,"FYECO:0000137":null,"FYPO:0000080":null,"FYPO:0000082":null,"FYPO:0001355":null,"FYPO:0001408":null,"FYPO:0004481":null,"FYPO_EXT:0000001":null,"FYPO_EXT:0000002":null}}


id: PBO:0039038
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"AGBL carboxypeptidase 1","termid":"PBO:0039038"}


id: GO:0015362
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: dicarboxylate(out) + Na+(out) = dicarboxylate(in) + Na+(in). In high-affinity transport the transporter is able to bind the solute even if it is only present at very low concentrations.","definition_xrefs":["TC:2.A.47.1.4"],"direct_ancestors":[{"relation_name":"is_a","term_name":"sodium:dicarboxylate symporter activity","termid":"GO:0017153"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0022857","GO:0005215","GO:0003674"],"is_obsolete":false,"name":"high-affinity sodium:dicarboxylate symporter activity","secondary_identifiers":["Reactome:R-HSA-433101"],"synonyms":[{"name":"high affinity sodium:dicarboxylate cotransporter activity","type":"broad"},{"name":"high affinity sodium:dicarboxylate symporter activity","type":"exact"}],"termid":"GO:0015362"}


id: FYPO:0004617
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"OBSOLETE. A cellular process phenotype observed in the vegetative growth phase of the life cycle in which minus-end specific microtubule depolymerization, i.e. the removal of tubulin dimers from the minus end of a microtubule, occurs at a greater rate, or speed, than normal.","definition_xrefs":["GO:0036078","PomBase:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete increased rate of microtubule depolymerization at minus end (obsolete FYPO:0004617)","synonyms":[{"name":"decreased microtubule stability","type":"related"},{"name":"increased microtubule depolymerization rate at minus end","type":"exact"},{"name":"increased microtubule minus end shrinkage","type":"related"},{"name":"increased rate of microtubule catastrophe at minus end","type":"related"},{"name":"increased rate of microtubule depolymerisation at minus end","type":"exact"},{"name":"increased rate of microtubule depolymerization at minus end during mitotic cell cycle","type":"related"},{"name":"increased rate of microtubule depolymerization at minus end during vegetative growth","type":"exact"},{"name":"increased rate of minus-end specific microtubule depolymerization","type":"exact"}],"termid":"FYPO:0004617"}


id: PR:000024934
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A ubiquitin ligase complex composed of two subunits of Schizosaccharomyces pombe E3 ubiquitin-protein ligase dma1.","definition_xrefs":["PMID:22669973","PRO:DAN"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein","termid":"PR:000000001"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dma1 homodimer (Schizosaccharomyces pombe)","pombase_gene_id":"SPAC17G8.10c","termid":"PR:000024934"}


id: PBO:0070888
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L15 pseudogene 20","termid":"PBO:0070888"}


id: PBO:0040561
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"beta-1,4-N-acetyl-galactosaminyltransferase 2","termid":"PBO:0040561"}


id: GO:0140851
data:
  {"annotated_genes":["SJAG_00341"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[90404],"is_not":false,"summary":null,"term":"GO:0140851"}]},"cv_name":"molecular_function","definition":"Catalysis of the transfer of a ubiquitin molecule to histone 3 at the lysine-14 residue.","definition_xrefs":["PMID:34010645","PMID:28624371","PMID:31468675"],"direct_ancestors":[{"relation_name":"is_a","term_name":"histone H3 ubiquitin ligase activity","termid":"GO:0141055"}],"gene_count":1,"genes_by_uniquename":{"SJAG_00341":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0016746"},{"rel_name":"is_a","termid":"GO:0019787"},{"rel_name":"is_a","termid":"GO:0140096"},{"rel_name":"is_a","termid":"GO:0004842"}],"interesting_parent_ids":["GO:0016746","GO:0140096","GO:0019787","GO:0004842","GO:0003674","GO:0003824","GO:0016740"],"is_obsolete":false,"name":"histone H3K14 ubiquitin ligase activity","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"histone H3-K14 ubiquitin ligase activity","type":"exact"},{"name":"histone ubiquitin ligase activity (H3-K14 specific)","type":"exact"}],"termid":"GO:0140851","terms_by_termid":{"GO:0140851":null}}


id: GO:1901200
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any negative regulation of calcium ion transport into cytosol that is involved in cellular response to salt stress.","definition_xrefs":["GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of calcium ion transport into cytosol","termid":"GO:0010523"},{"relation_name":"part_of","term_name":"cellular response to salt stress","termid":"GO:0071472"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"regulates","termid":"GO:0055085"},{"rel_name":"negatively_regulates","termid":"GO:0006810"},{"rel_name":"negatively_regulates","termid":"GO:0055085"}],"interesting_parent_ids":["GO:0006810","GO:0008150","GO:0055085"],"is_obsolete":false,"name":"negative regulation of calcium ion transport into cytosol involved in cellular response to salt stress","synonyms":[{"name":"negative regulation of calcium ion transport into cytosol involved in cellular response to ionic osmotic stress","type":"exact"},{"name":"negative regulation of calcium ion transport into cytosol involved in cellular salinity response","type":"exact"}],"termid":"GO:1901200"}


id: GO:0033278
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The multiplication or reproduction of cells, resulting in the expansion of a cell population in the midbrain.","definition_xrefs":["GOC:dgf","GO_REF:0000021"],"direct_ancestors":[{"relation_name":"is_a","term_name":"neural precursor cell proliferation","termid":"GO:0061351"},{"relation_name":"part_of","term_name":"midbrain development","termid":"GO:0030901"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cell proliferation in midbrain","synonyms":[{"name":"cell proliferation in mesencephalon","type":"exact"},{"name":"mesencepahalic cell proliferation","type":"related"}],"termid":"GO:0033278"}


id: PBO:0081932
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Zn regulated GTPase metalloprotein activator 1B","termid":"PBO:0081932"}


id: GO:0002574
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which a relatively unspecialized myeloid precursor cell acquires the specialized features of a thrombocyte, a nucleated cell found in all vertebrates but mammals involved in hemostasis.","definition_xrefs":["GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"myeloid cell differentiation","termid":"GO:0030099"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"thrombocyte differentiation","termid":"GO:0002574"}


id: GO:0032535
data:
  {"annotated_genes":["SJAG_04232","SJAG_04332","SJAG_03229","SJAG_04668","SJAG_03655","SJAG_01894","SJAG_02566","SJAG_00279","SJAG_03401","SJAG_02532","SJAG_00409","SJAG_03086","SJAG_04479","SJAG_04703","SJAG_01943","SJAG_01993","SJAG_04100","SJAG_02019","SJAG_00521","SJAG_02700","SJAG_01805","SJAG_04982"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[101061,88282,115355,78738,75064,77883,88473],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0051016"},{"annotations":[91778,102058,110558],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006884"},{"annotations":[102879,88368],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0009992"},{"annotations":[114527],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0048671"},{"annotations":[97999],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0045773"},{"annotations":[89848],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0045793"},{"annotations":[101510,106570,78119,86576,76250,98001],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0030833"},{"annotations":[90609],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0008361"},{"annotations":[75069,72078],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0042989"}]},"cv_name":"biological_process","definition":"A process that modulates the size of a cellular component.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular component organization","termid":"GO:0016043"},{"relation_name":"is_a","term_name":"regulation of anatomical structure size","termid":"GO:0090066"}],"gene_count":22,"genes_by_uniquename":{"SJAG_00279":null,"SJAG_00409":null,"SJAG_00521":null,"SJAG_01805":null,"SJAG_01894":null,"SJAG_01943":null,"SJAG_01993":null,"SJAG_02019":null,"SJAG_02532":null,"SJAG_02566":null,"SJAG_02700":null,"SJAG_03086":null,"SJAG_03229":null,"SJAG_03401":null,"SJAG_03655":null,"SJAG_04100":null,"SJAG_04232":null,"SJAG_04332":null,"SJAG_04479":null,"SJAG_04668":null,"SJAG_04703":null,"SJAG_04982":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of cellular component size","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"termid":"GO:0032535","terms_by_termid":{"GO:0006884":null,"GO:0008361":null,"GO:0009992":null,"GO:0030833":null,"GO:0042989":null,"GO:0045773":null,"GO:0045793":null,"GO:0048671":null,"GO:0051016":null}}


id: PBO:0005599
data:
  {"annotation_feature_type":"gene","cv_name":"EC numbers","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"5.4.3.8","termid":"PBO:0005599"}


id: GO:0033757
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: sucrose + acceptor = 3-dehydro-alpha-D-glucosyl-beta-D-fructofuranoside + reduced acceptor.","definition_xrefs":["EC:1.1.99.13"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on CH-OH group of donors","termid":"GO:0016614"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016491","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"glucoside 3-dehydrogenase activity","secondary_identifiers":["Wikipedia:Glucoside_3-dehydrogenase","MetaCyc:GLUCOSIDE-3-DEHYDROGENASE-RXN","RHEA:16589"],"synonyms":[{"name":"D-aldohexopyranoside dehydrogenase","type":"related"},{"name":"D-aldohexoside:(acceptor) 3-oxidoreductase","type":"related"},{"name":"D-aldohexoside:acceptor 3-oxidoreductase","type":"related"},{"name":"D-aldohexoside:cytochrome c oxidoreductase","type":"related"},{"name":"hexopyranoside-cytochrome c oxidoreductase","type":"related"}],"termid":"GO:0033757"}


id: PBO:0064174
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"phospholipase A2 group X","termid":"PBO:0064174"}


id: PBO:0041488
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"C11orf98 pseudogene 3","termid":"PBO:0041488"}


id: PR:O13956
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A pre-rRNA-processing protein TSR1 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO00635","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosome biogenesis protein tsr1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC23H4.15","secondary_identifiers":["UniProtKB:O13956"],"synonyms":[{"name":"Spom972h-TSR1","type":"exact"}],"termid":"PR:O13956"}


id: PBO:0067566
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 719, pseudogene","termid":"PBO:0067566"}


id: PBO:0071601
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L36a pseudogene 18","termid":"PBO:0071601"}


id: PBO:0000122
data:
  {"annotation_feature_type":"gene","cv_name":"name_description","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Meiotic Expression Upregulated","termid":"PBO:0000122"}


id: GO:0106110
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of type B trichothecene vomitoxin, also known as deoxynivalenol, a poisonous substance produced by some species of fungi and predominantly occurs in grains such as wheat, barley and oats.","definition_xrefs":["PMID:19333439","PMID:25680507","PMID:25758923","PMID:8637056"],"direct_ancestors":[{"relation_name":"is_a","term_name":"sesquiterpenoid biosynthetic process","termid":"GO:0016106"},{"relation_name":"is_a","term_name":"heterocycle biosynthetic process","termid":"GO:0018130"},{"relation_name":"is_a","term_name":"primary alcohol biosynthetic process","termid":"GO:0034309"},{"relation_name":"is_a","term_name":"ketone biosynthetic process","termid":"GO:0042181"},{"relation_name":"is_a","term_name":"mycotoxin biosynthetic process","termid":"GO:0043386"},{"relation_name":"is_a","term_name":"polyol biosynthetic process","termid":"GO:0046173"},{"relation_name":"is_a","term_name":"epoxide metabolic process","termid":"GO:0097176"},{"relation_name":"is_a","term_name":"olefinic compound biosynthetic process","termid":"GO:0120255"},{"relation_name":"is_a","term_name":"organic cyclic compound biosynthetic process","termid":"GO:1901362"},{"relation_name":"is_a","term_name":"ether biosynthetic process","termid":"GO:1901503"},{"relation_name":"is_a","term_name":"secondary alcohol biosynthetic process","termid":"GO:1902653"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0019748"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0006629"}],"interesting_parent_ids":["GO:0044281","GO:0019748","GO:0008150","GO:0006629"],"is_obsolete":false,"name":"vomitoxin biosynthetic process","synonyms":[{"name":"DON biosynthetic process","type":"exact"},{"name":"deoxynivalenol biosynthetic process","type":"exact"},{"name":"vomitoxin anabolism","type":"exact"},{"name":"vomitoxin biosynthesis","type":"exact"},{"name":"vomitoxin formation","type":"exact"},{"name":"vomitoxin synthesis","type":"exact"}],"termid":"GO:0106110"}


id: PBO:0069134
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 384, pseudogene","termid":"PBO:0069134"}


id: PBO:0066388
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RecQ like helicase 4","termid":"PBO:0066388"}


id: SO:0001413
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"The point within a chromosome where a translocation begins or ends.","definition_xrefs":["SO:cb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"chromosome_breakpoint","termid":"SO:0001021"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"translocation_breakpoint","synonyms":[{"name":"translocation breakpoint","type":"exact"}],"termid":"SO:0001413"}


id: PBO:0004357
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transcription corepressor (predicted)","termid":"PBO:0004357"}


id: PBO:0071579
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L35 pseudogene 8","termid":"PBO:0071579"}


id: FYPO:0004481
data:
  {"alleles_by_uniquename":{"SJAG_00266:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_00266","name":"atf1delta","uniquename":"SJAG_00266:allele-1"},"SJAG_02592:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_02592","name":"sty1delta","uniquename":"SJAG_02592:allele-1"}},"annotation_feature_type":"genotype","cv_annotations":{"single_locus_phenotype":[{"annotations":[115995,116007],"is_not":false,"summary":null,"term":"FYPO:0004481"}]},"cv_name":"fission_yeast_phenotype","definition":"A vegetative cell population growth phenotype in which a cell population does not grow at high temperatures.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abolished vegetative cell population growth","termid":"FYPO:0001575"}],"gene_count":2,"genes_by_uniquename":{"SJAG_00266":null,"SJAG_02592":null},"genotype_count":2,"genotypes_by_uniquename":{"atf1delta":{"display_name":"atf1delta","display_uniquename":"atf1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_00266:allele-1","expression":"Null"}]}]},"sty1delta":{"display_name":"sty1delta","display_uniquename":"sty1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_02592:allele-1","expression":"Null"}]}]}},"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0002058"},{"rel_name":"is_a","termid":"FYPO:0000003"},{"rel_name":"is_a","termid":"FYPO:0002057"},{"rel_name":"is_a","termid":"FYPO:0000139"},{"rel_name":"is_a","termid":"FYPO:0002060"}],"interesting_parent_ids":["FYPO:0002058","FYPO:0005447","FYPO:0001985","FYPO:0002057","FYPO:0000139","FYPO:0002060","FYPO:0000003"],"is_obsolete":false,"name":"abolished cell population growth at high temperature","references_by_uniquename":{"PMID:31150379":null},"single_locus_annotated_genes":["SJAG_02592","SJAG_00266"],"single_locus_genotype_uniquenames":["atf1delta","sty1delta"],"synonyms":[{"name":"abolished cell population growth at high temperature during mitotic cell cycle","type":"related"},{"name":"abolished growth at high temperature","type":"broad"},{"name":"abolished vegetative cell population growth at high temperature","type":"exact"},{"name":"cell population growth at high temperature abolished","type":"exact"},{"name":"heat sensitive","type":"related"},{"name":"hypersensitive to high temperature","type":"related"},{"name":"sensitive to heat","type":"related"},{"name":"sensitive to high temperature","type":"related"},{"name":"sensitive to high temperature during vegetative growth","type":"related"},{"name":"temperature sensitive","type":"related"}],"termid":"FYPO:0004481","terms_by_termid":{"FYECO:0000004":null,"FYECO:0000137":null,"FYPO:0004481":null}}


id: PBO:0109228
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"KLF3 pseudogene 2","termid":"PBO:0109228"}


id: GO:0141025
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The attachment of a symbiont to its host by binding to a glycoprotein on the host cell surface. The host is defined as the larger of the organisms involved in a symbiotic interaction.","definition_xrefs":["PMID:12010488","PMID:15487949","PMID:29184850","PMID:17630833"],"direct_ancestors":[{"relation_name":"is_a","term_name":"adhesion of symbiont to host cell","termid":"GO:0044650"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"adhesion of symbiont to host cell surface via host glycoprotein","termid":"GO:0141025"}


id: GO:0044183
data:
  {"annotated_genes":["SJAG_00609","SJAG_02270","SJAG_04567","SJAG_04197","SJAG_03815","SJAG_00558","SJAG_00750","SJAG_00954","SJAG_04602","SJAG_02875","SJAG_03099","SJAG_01510","SJAG_00770","SJAG_04228","SJAG_05414","SJAG_02014","SJAG_02378","SJAG_00447","SJAG_04511","SJAG_01002","SJAG_03237","SJAG_05191","SJAG_03463","SJAG_01186","SJAG_03930","SJAG_00353","SJAG_04121","SJAG_02919","SJAG_04684","SJAG_02926","SJAG_00790","SJAG_04074","SJAG_02461","SJAG_04844","SJAG_04899","SJAG_01874","SJAG_01664","SJAG_03570","SJAG_00564","SJAG_01684","SJAG_01615","SJAG_03320","SJAG_04055"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[70395,85170,87153,88967,91119,92976,95675,96780,97346,98714,100676,102618,104460,104834,105068,106473,106474,106874,112413,113032,113243,113499,113952,114349],"is_not":false,"summary":null,"term":"GO:0044183"},{"annotations":[64489,96932,84697,88069,94738,88299,103739,107871,89121,102597,83727,112164,105670,84164,98079,112163,101021,95439,99111],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0140662"}]},"cv_name":"molecular_function","definition":"Binding to a protein or a protein-containing complex to assist the protein folding process.","definition_xrefs":["GOC:mtg_cambridge_2009"],"direct_ancestors":[{"relation_name":"is_a","term_name":"molecular_function","termid":"GO:0003674"}],"gene_count":43,"genes_by_uniquename":{"SJAG_00353":null,"SJAG_00447":null,"SJAG_00558":null,"SJAG_00564":null,"SJAG_00609":null,"SJAG_00750":null,"SJAG_00770":null,"SJAG_00790":null,"SJAG_00954":null,"SJAG_01002":null,"SJAG_01186":null,"SJAG_01510":null,"SJAG_01615":null,"SJAG_01664":null,"SJAG_01684":null,"SJAG_01874":null,"SJAG_02014":null,"SJAG_02270":null,"SJAG_02378":null,"SJAG_02461":null,"SJAG_02875":null,"SJAG_02919":null,"SJAG_02926":null,"SJAG_03099":null,"SJAG_03237":null,"SJAG_03320":null,"SJAG_03463":null,"SJAG_03570":null,"SJAG_03815":null,"SJAG_03930":null,"SJAG_04055":null,"SJAG_04074":null,"SJAG_04121":null,"SJAG_04197":null,"SJAG_04228":null,"SJAG_04511":null,"SJAG_04567":null,"SJAG_04602":null,"SJAG_04684":null,"SJAG_04844":null,"SJAG_04899":null,"SJAG_05191":null,"SJAG_05414":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674"],"is_obsolete":false,"name":"protein folding chaperone","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000033":null,"GO_REF:0000107":null},"secondary_identifiers":["Reactome:R-HSA-9018785"],"synonyms":[{"name":"chaperone activity","type":"broad"},{"name":"protein binding involved in protein folding","type":"exact"}],"termid":"GO:0044183","terms_by_termid":{"GO:0044183":null,"GO:0140662":null}}


id: PBO:0059376
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial ribosomal protein S21 pseudogene 1","termid":"PBO:0059376"}


id: MOD:01323
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"modification from Unimod Other -","definition_xrefs":["Unimod:256#H"],"direct_ancestors":[{"relation_name":"is_a","term_name":"propionaldehyde +40","termid":"MOD:00579"},{"relation_name":"is_a","term_name":"modified L-histidine residue","termid":"MOD:00909"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"propionaldehyde +40 - site H","synonyms":[{"name":"Delta:H(4)C(3)","type":"related"},{"name":"Propionaldehyde +40","type":"related"}],"termid":"MOD:01323"}


id: GO:1903573
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of a response to endoplasmic reticulum stress.","definition_xrefs":["GOC:bf","GOC:TermGenie","GOC:PARL","GO_REF:0000058","PMID:11381086"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of cellular process","termid":"GO:0048523"},{"relation_name":"is_a","term_name":"negative regulation of response to stimulus","termid":"GO:0048585"},{"relation_name":"is_a","term_name":"regulation of response to endoplasmic reticulum stress","termid":"GO:1905897"},{"relation_name":"negatively_regulates","term_name":"response to endoplasmic reticulum stress","termid":"GO:0034976"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of response to endoplasmic reticulum stress","synonyms":[{"name":"down regulation of ER stress response","type":"exact"},{"name":"down regulation of cellular response to endoplasmic reticulum stress","type":"exact"},{"name":"down regulation of response to ER stress","type":"exact"},{"name":"down regulation of response to endoplasmic reticulum stress","type":"exact"},{"name":"down-regulation of ER stress response","type":"exact"},{"name":"down-regulation of cellular response to endoplasmic reticulum stress","type":"exact"},{"name":"down-regulation of response to ER stress","type":"exact"},{"name":"down-regulation of response to endoplasmic reticulum stress","type":"exact"},{"name":"downregulation of ER stress response","type":"exact"},{"name":"downregulation of cellular response to endoplasmic reticulum stress","type":"exact"},{"name":"downregulation of response to ER stress","type":"exact"},{"name":"downregulation of response to endoplasmic reticulum stress","type":"exact"},{"name":"inhibition of ER stress response","type":"narrow"},{"name":"inhibition of cellular response to endoplasmic reticulum stress","type":"narrow"},{"name":"inhibition of response to ER stress","type":"narrow"},{"name":"inhibition of response to endoplasmic reticulum stress","type":"narrow"},{"name":"negative regulation of ER stress response","type":"exact"},{"name":"negative regulation of cellular response to endoplasmic reticulum stress","type":"exact"},{"name":"negative regulation of response to ER stress","type":"exact"}],"termid":"GO:1903573"}


id: PBO:0089914
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"histone H2B-K119 ubiquitin ligase complex (HULC) subunit, ubiquitin-protein ligase E3 Brl1","termid":"PBO:0089914"}


id: GO:0102992
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: H+ + 2-methylbutyronitrile + NADPH + O2 = H2O + NADP + 2-hydroxy-2-methylbutyronitrile.","definition_xrefs":["EC:1.14.13.-","GOC:pz"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen","termid":"GO:0016709"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016491"],"is_obsolete":false,"name":"2-methylbutyronitrile hydroxylase activity","secondary_identifiers":["MetaCyc:RXN-9642","RHEA:51948"],"termid":"GO:0102992"}


id: PBO:0041837
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cancer susceptibility 17","termid":"PBO:0041837"}


id: PBO:0078622
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tripartite motif containing 71","termid":"PBO:0078622"}


id: GO:0060831
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The series of molecular signals generated as a consequence of activation of the transmembrane protein Smoothened contributing to the dorsal/ventral pattern of the neural tube.","definition_xrefs":["GOC:dph","GOC:tb","GOC:sdb_2009"],"direct_ancestors":[{"relation_name":"is_a","term_name":"smoothened signaling pathway","termid":"GO:0007224"},{"relation_name":"part_of","term_name":"dorsal/ventral neural tube patterning","termid":"GO:0021904"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"smoothened signaling pathway involved in dorsal/ventral neural tube patterning","synonyms":[{"name":"hedgehog signaling pathway involved in dorsal/ventral neural tube patterning","type":"exact"},{"name":"hh signaling pathway involved in dorsal/ventral neural tube patterning","type":"exact"},{"name":"smoothened signalling pathway involved in dorsal/ventral neural tube patterning","type":"exact"}],"termid":"GO:0060831"}


id: PBO:0011481
data:
  {"annotation_feature_type":"gene","cv_name":"name_description","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"defect of the gene silencing at centromeric heterochromatin","termid":"PBO:0011481"}


id: PBO:0002077
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tubulin specific chaperone cofactor C Tbc1 (predicted)","termid":"PBO:0002077"}


id: FYPO:0005050
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which occurrence of chromatin binding by a gene product (usually a protein) in a mutant is decreased when the cell is subject to nitrogen starvation. The affected gene product may be encoded by the mutated gene, or by a different gene, and may normally bind DNA, protein, or both in chromatin.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased chromatin binding","termid":"FYPO:0002577"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000707"},{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000702"}],"interesting_parent_ids":["FYPO:0000707","FYPO:0000702","FYPO:0000652","FYPO:0001985"],"is_obsolete":false,"name":"decreased chromatin binding during cellular response to nitrogen starvation","synonyms":[{"name":"decreased chromatin binding during cellular response to nitrogen depletion","type":"exact"},{"name":"decreased chromatin binding during cellular response to nitrogen deprivation","type":"exact"},{"name":"reduced chromatin binding during cellular response to nitrogen starvation","type":"exact"}],"termid":"FYPO:0005050"}


id: GO:0006211
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of 5-methylcytosine, a methylated base of DNA.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"aromatic compound catabolic process","termid":"GO:0019439"},{"relation_name":"is_a","term_name":"5-methylcytosine metabolic process","termid":"GO:0019857"},{"relation_name":"is_a","term_name":"pyrimidine-containing compound catabolic process","termid":"GO:0072529"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044248"}],"interesting_parent_ids":["GO:0008150","GO:0044248"],"is_obsolete":false,"name":"5-methylcytosine catabolic process","synonyms":[{"name":"5-methylcytosine breakdown","type":"exact"},{"name":"5-methylcytosine catabolism","type":"exact"},{"name":"5-methylcytosine degradation","type":"exact"}],"termid":"GO:0006211"}


id: GO:0043474
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving a pigment, any general or particular coloring matter in living organisms, resulting in the deposition or aggregation of pigment in an organism, tissue or cell.","definition_xrefs":["GOC:dph","GOC:tb","GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pigment metabolic process","termid":"GO:0042440"},{"relation_name":"part_of","term_name":"pigmentation","termid":"GO:0043473"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"pigment metabolic process involved in pigmentation","synonyms":[{"name":"pigment metabolic process during pigmentation","type":"related"},{"name":"pigment metabolism during pigmentation","type":"related"}],"termid":"GO:0043474"}


id: PBO:0090945
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"GARP complex subunit Vps53","termid":"PBO:0090945"}


id: GO:0036084
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The directed movement of GDP-fucose into the endoplasmic reticulum lumen. GDP-fucose is a substance composed of fucose in glycosidic linkage with guanosine diphosphate.","definition_xrefs":["GOC:sart","PMID:3458237"],"direct_ancestors":[{"relation_name":"is_a","term_name":"GDP-fucose transmembrane transport","termid":"GO:0015783"},{"relation_name":"is_a","term_name":"cytosol to endoplasmic reticulum transport","termid":"GO:0046967"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0055085"},{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0051179","GO:0008150","GO:0006810","GO:0055085"],"is_obsolete":false,"name":"GDP-fucose import into endoplasmic reticulum lumen","synonyms":[{"name":"GDP-fucose import into endoplasmic reticulum","type":"exact"},{"name":"GDP-fucose transport across endoplasmic reticulum membrane","type":"exact"},{"name":"GDP-fucose transport into endoplasmic reticulum lumen","type":"exact"}],"termid":"GO:0036084"}


id: FYPO:0000004
data:
  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id: PR:O94278
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- thi5 gene.","definition_xrefs":["PRO:DNx","UniProtKB:O94278"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"thiamine repressible genes regulatory protein thi5 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBP8B7.30c","synonyms":[{"name":"Spom972h-thi5","type":"exact"},{"name":"transcription factor ntf1 5 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:O94278"}


id: GO:0051816
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The production of structures and/or molecules in an organism that are required for the acquisition and/or utilization of nutrients obtained from a second organism, where the two organisms are in a symbiotic interaction.","definition_xrefs":["GOC:cc"],"gene_count":0,"genotype_count":0,"name":"obsolete acquisition of nutrients from other organism during symbiotic interaction (obsolete GO:0051816)","termid":"GO:0051816"}


id: GO:1902711
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A protein complex which is capable of GABA-A receptor activity. In human, it is usually composed of either two alpha, two beta and one gamma chain of the GABA-A receptor subunits or 5 chains of the GABA-A receptor subunits rho1-3 (formally known as GABA-C receptor).","definition_xrefs":["GOC:TermGenie","GOC:bhm","PMID:18790874","GO_REF:0000088"],"direct_ancestors":[{"relation_name":"is_a","term_name":"GABA receptor complex","termid":"GO:1902710"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575","GO:0032991"],"is_obsolete":false,"name":"GABA-A receptor complex","termid":"GO:1902711"}


id: PBO:0038879
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"adenylate cyclase 6","termid":"PBO:0038879"}


id: PBO:0047033
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"family with sequence similarity 98 member A","termid":"PBO:0047033"}


id: PBO:0082579
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Cholinephosphate cytidylyltransferase; a rate-determining enzyme of the CDP-choline pathway for phosphatidylcholine synthesis, inhibited by Sec14p, activated upon lipid-binding; controls phosphatidylcholine homeostasis; contains an element within the regulatory domain involved in both silencing and activation of enzymatic activity","termid":"PBO:0082579"}


id: PBO:0003884
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial carboxylic acid transporter (predicted)","termid":"PBO:0003884"}


id: PBO:0042719
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cell cycle exit and neuronal differentiation 1 pseudogene 1","termid":"PBO:0042719"}


id: FYPO:0006058
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which vacuole fusion, the merging of two vacuole membranes to form a single vacuole, is abnormal during sporulation.","definition_xrefs":["PomBase:mah","GO:0042144"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal vacuole fusion","termid":"FYPO:0006057"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0000002","FYPO:0001985"],"is_obsolete":false,"name":"abnormal vacuole fusion during sporulation","synonyms":[{"name":"abnormal homotypic vacuole fusion during sporulation","type":"exact"},{"name":"abnormal vacuole fusion, non-autophagic, during sporulation","type":"exact"}],"termid":"FYPO:0006058"}


id: GO:0043269
data:
  {"annotated_genes":["SJAG_00296","SJAG_04551","SJAG_03631"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[87123,109967],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1905949"},{"annotations":[98404],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1905665"}]},"cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of the directed movement of charged atoms or small charged molecules into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of transport","termid":"GO:0051049"},{"relation_name":"regulates","term_name":"monoatomic ion transport","termid":"GO:0006811"}],"gene_count":3,"genes_by_uniquename":{"SJAG_00296":null,"SJAG_03631":null,"SJAG_04551":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0006810","GO:0008150"],"is_obsolete":false,"name":"regulation of monoatomic ion transport","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"regulation of ion transport","type":"broad"}],"termid":"GO:0043269","terms_by_termid":{"GO:1905665":null,"GO:1905949":null}}


id: PR:O74939
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- dbl2 gene.","definition_xrefs":["PRO:DNx","UniProtKB:O74939"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized protein C553.01c (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC553.01c","synonyms":[{"name":"Spom972h-dbl2","type":"exact"}],"termid":"PR:O74939"}


id: PBO:0066518
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ral guanine nucleotide dissociation stimulator like 3","termid":"PBO:0066518"}


id: GO:0002348
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process leading to positive selection of B cells in the bone marrow. Positive selection is the process in which B or T cells are selected to survive based on signaling through their antigen receptors.","definition_xrefs":["GOC:jal"],"direct_ancestors":[{"relation_name":"is_a","term_name":"central B cell selection","termid":"GO:0002340"},{"relation_name":"is_a","term_name":"B cell positive selection","termid":"GO:0002346"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"central B cell positive selection","synonyms":[{"name":"central B lymphocyte positive selection","type":"exact"},{"name":"central B-cell positive selection","type":"exact"},{"name":"central B-lymphocyte positive selection","type":"exact"}],"termid":"GO:0002348"}


id: GO:0070982
data:
  {"annotated_genes":["SJAG_04549"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[98420],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0070981"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways involving L-asparagine, (2S)-2-amino-3-carbamoylpropanoic acid.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"asparagine metabolic process","termid":"GO:0006528"},{"relation_name":"is_a","term_name":"amide metabolic process","termid":"GO:0043603"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04549":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006520"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0044281","GO:0008150","GO:0006520"],"is_obsolete":false,"name":"L-asparagine metabolic process","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"L-asparagine metabolism","type":"exact"}],"termid":"GO:0070982","terms_by_termid":{"GO:0070981":null}}


id: PBO:0049497
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"H2A clustered histone 4","termid":"PBO:0049497"}


id: GO:0062137
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"Any protein complex that is part of a membrane and which functions as a cargo receptor.","definition_xrefs":["PMID:27903609"],"direct_ancestors":[{"relation_name":"is_a","term_name":"membrane protein complex","termid":"GO:0098796"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0032991","GO:0005575"],"is_obsolete":false,"name":"cargo receptor complex","termid":"GO:0062137"}


id: PBO:0083763
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Essential kinetochore protein associated with microtubules and SPBs; component of the kinetochore sub-complex COMA (Ctf19p, Okp1p, Mcm21p, Ame1p); involved in spindle checkpoint maintenance; orthologous to human centromere constitutive-associated network (CCAN) subunit CENP-U and fission yeast Mis17; relative distribution to the nucleus increases upon DNA replication stress","termid":"PBO:0083763"}


id: GO:0016255
data:
  {"annotated_genes":["SJAG_02776","SJAG_05278","SJAG_03672","SJAG_03292","SJAG_00846"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[70871,73968,73997,87310,110579],"is_not":false,"summary":null,"term":"GO:0016255"}]},"cv_name":"biological_process","definition":"A transamidation reaction that results in the cleavage of the polypeptide chain and the concomitant transfer of the GPI anchor to the newly formed carboxy-terminal amino acid of the anchored protein. The cleaved C-terminal contains the C-terminal GPI signal sequence of the newly synthesized polypeptide chain.","definition_xrefs":["ISBN:0879695595"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein modification process","termid":"GO:0036211"},{"relation_name":"part_of","term_name":"GPI anchor biosynthetic process","termid":"GO:0006506"}],"gene_count":5,"genes_by_uniquename":{"SJAG_00846":null,"SJAG_02776":null,"SJAG_03292":null,"SJAG_03672":null,"SJAG_05278":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0042158"},{"rel_name":"part_of","termid":"GO:0006629"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006629","GO:0008150","GO:0042158"],"is_obsolete":false,"name":"attachment of GPI anchor to protein","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"termid":"GO:0016255","terms_by_termid":{"GO:0016255":null}}


id: GO:0034992
data:
  {"annotated_genes":["SJAG_05303","SJAG_04489","SJAG_03783","SJAG_01538","SJAG_03491","SJAG_05196","SJAG_04558","SJAG_01242","SJAG_05207"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[70629],"is_not":false,"summary":null,"term":"GO:0034992"},{"annotations":[109405],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0034993"},{"annotations":[111344,83766,94106,100037,97120],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0180028"},{"annotations":[99089,92842],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:1990612"}]},"cv_name":"cellular_component","definition":"A region of the nuclear envelope to which a microtubule organizing center (MTOC) attaches; protein complexes embedded in the nuclear envelope mediate direct or indirect linkages between the microtubule cytoskeleton and the nuclear envelope.","definition_xrefs":["PMID:18692466","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular anatomical entity","termid":"GO:0110165"},{"relation_name":"part_of","term_name":"nuclear envelope","termid":"GO:0005635"}],"gene_count":9,"genes_by_uniquename":{"SJAG_01242":null,"SJAG_01538":null,"SJAG_03491":null,"SJAG_03783":null,"SJAG_04489":null,"SJAG_04558":null,"SJAG_05196":null,"SJAG_05207":null,"SJAG_05303":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005634"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575","GO:0005634"],"is_obsolete":false,"name":"microtubule organizing center attachment site","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"synonyms":[{"name":"MAS","type":"exact"},{"name":"MTOC attachment site","type":"exact"},{"name":"microtubule organising centre attachment site","type":"exact"}],"termid":"GO:0034992","terms_by_termid":{"GO:0034992":null,"GO:0034993":null,"GO:0180028":null,"GO:1990612":null}}


id: PBO:0034493
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-split_kinetochore_during_meiosis_I","termid":"PBO:0034493"}


id: PBO:0109136
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SHOX homeobox 2","termid":"PBO:0109136"}


id: PBO:0048355
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glyceraldehyde-3-phosphate dehydrogenase pseudogene 66","termid":"PBO:0048355"}


id: PBO:0060851
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NIMA related kinase 2","termid":"PBO:0060851"}


id: PBO:0049331
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"general transcription factor IIF subunit 2 pseudogene 1","termid":"PBO:0049331"}


id: PBO:0057029
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 125b-1","termid":"PBO:0057029"}


id: GO:0048626
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which a cell becomes capable of differentiating autonomously into a myoblast in an environment that is neutral with respect to the developmental pathway. Upon specification, the cell fate can be reversed. A myoblast is a mononucleate cell type that, by fusion with other myoblasts, gives rise to the myotubes that eventually develop into skeletal muscle fibers.","definition_xrefs":["CL:0000056","GOC:mtg_muscle","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell fate specification","termid":"GO:0001708"},{"relation_name":"part_of","term_name":"myoblast fate commitment","termid":"GO:0048625"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"myoblast fate specification","termid":"GO:0048626"}


id: GO:0043217
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process of preserving the structure and function of mature myelin. This includes maintaining the compact structure of myelin necessary for its electrical insulating characteristics as well as the structure of non-compact regions such as Schmidt-Lantermann clefts and paranodal loops. This does not include processes responsible for maintaining the nodes of Ranvier, which are not part of the myelin sheath.","definition_xrefs":["GOC:dgh"],"direct_ancestors":[{"relation_name":"is_a","term_name":"plasma membrane organization","termid":"GO:0007009"},{"relation_name":"part_of","term_name":"myelination","termid":"GO:0042552"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0061024"}],"interesting_parent_ids":["GO:0061024","GO:0008150"],"is_obsolete":false,"name":"myelin maintenance","synonyms":[{"name":"myelin sheath maintenance","type":"exact"}],"termid":"GO:0043217"}


id: PBO:0060268
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"myosin heavy chain 2","termid":"PBO:0060268"}


id: GO:0036346
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a L-cysteine stimulus. L-cysteine is an optically active form of cysteine having L-configuration.","definition_xrefs":["GOC:al"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular response to amino acid stimulus","termid":"GO:0071230"},{"relation_name":"is_a","term_name":"response to L-cysteine","termid":"GO:1901367"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cellular response to L-cysteine","termid":"GO:0036346"}


id: GO:0009129
data:
  {"annotated_genes":["SJAG_04709","SJAG_03164","SJAG_04627","SJAG_00694","SJAG_00197","SJAG_00444","SJAG_04713","SJAG_04354","SJAG_03771","SJAG_03708","SJAG_00964","SJAG_00533","SJAG_04487"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[94668,113428,85323,89451,108449],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0044205"},{"annotations":[67937],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0009224"},{"annotations":[104811,78320],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006231"},{"annotations":[77971,104812],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006226"},{"annotations":[111561,84284,83262,88988,87905],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0044206"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways involving pyrimidine nucleoside monophosphate, a compound consisting of a pyrimidine base linked to a ribose or deoxyribose sugar esterified with phosphate on the sugar.","definition_xrefs":["ISBN:0198506732","GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nucleoside monophosphate metabolic process","termid":"GO:0009123"}],"gene_count":13,"genes_by_uniquename":{"SJAG_00197":null,"SJAG_00444":null,"SJAG_00533":null,"SJAG_00694":null,"SJAG_00964":null,"SJAG_03164":null,"SJAG_03708":null,"SJAG_03771":null,"SJAG_04354":null,"SJAG_04487":null,"SJAG_04627":null,"SJAG_04709":null,"SJAG_04713":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0055086"}],"interesting_parent_ids":["GO:0055086","GO:0008150","GO:0044281"],"is_obsolete":false,"name":"pyrimidine nucleoside monophosphate metabolic process","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null,"GO_REF:0000108":null},"synonyms":[{"name":"pyrimidine nucleoside monophosphate metabolism","type":"exact"}],"termid":"GO:0009129","terms_by_termid":{"GO:0006226":null,"GO:0006231":null,"GO:0009224":null,"GO:0044205":null,"GO:0044206":null}}


id: GO:0033702
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: (1R,5S)-carveol + NAD+ = (S)-carvone + H+ + NADH.","definition_xrefs":["RHEA:14825","EC:1.1.1.275"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor","termid":"GO:0016616"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003824","GO:0016491","GO:0003674"],"is_obsolete":false,"name":"(+)-trans-carveol dehydrogenase activity","secondary_identifiers":["KEGG_REACTION:R06117","MetaCyc:RXN-9397"],"synonyms":[{"name":"(+)-trans-carveol:NAD+ oxidoreductase activity","type":"related"}],"termid":"GO:0033702"}


id: MOD:00724
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively replaces one hydrogen atom on a nitrogen of an L-histidine residue with one methyl group.","definition_xrefs":["OMSSA:74","Unimod:34#H"],"direct_ancestors":[{"relation_name":"is_a","term_name":"monomethylated residue","termid":"MOD:00599"},{"relation_name":"is_a","term_name":"N-methylated residue","termid":"MOD:00602"},{"relation_name":"is_a","term_name":"methylated histidine","termid":"MOD:00661"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:00427"}],"interesting_parent_ids":["MOD:00427"],"is_obsolete":false,"name":"N-methylated L-histidine","synonyms":[{"name":"Methyl","type":"related"},{"name":"NMeHis","type":"exact"},{"name":"methylh","type":"exact"}],"termid":"MOD:00724"}


id: GO:0021638
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process that gives rise to the trigeminal nerve. This process pertains to the initial formation of a structure from unspecified parts. The trigeminal nerve is composed of three large branches. They are the ophthalmic (V1, sensory), maxillary (V2, sensory) and mandibular (V3, motor and sensory) branches. The sensory ophthalmic branch travels through the superior orbital fissure and passes through the orbit to reach the skin of the forehead and top of the head. The maxillary nerve contains sensory branches that reach the pterygopalatine fossa via the inferior orbital fissure (face, cheek and upper teeth) and pterygopalatine canal (soft and hard palate, nasal cavity and pharynx). The motor part of the mandibular branch is distributed to the muscles of mastication, the mylohyoid muscle and the anterior belly of the digastric. The mandibular nerve also innervates the tensor veli palatini and tensor tympani muscles. The sensory part of the mandibular nerve is composed of branches that carry general sensory information from the mucous membranes of the mouth and cheek, anterior two-thirds of the tongue, lower teeth, skin of the lower jaw, side of the head and scalp and meninges of the anterior and middle cranial fossae.","definition_xrefs":["GOC:dph","GOC:cls","GOC:dgh","GOC:jid","GO_REF:0000021","ISBN:0838580343"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cranial nerve formation","termid":"GO:0021603"},{"relation_name":"part_of","term_name":"trigeminal nerve morphogenesis","termid":"GO:0021636"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"trigeminal nerve formation","synonyms":[{"name":"CN V biosynthesis","type":"related"},{"name":"CN V formation","type":"related"}],"termid":"GO:0021638"}


id: PR:P0CT38
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- Tf2-5 gene.","definition_xrefs":["PRO:DNx","UniProtKB:P0CT38"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transposon Tf2-5 polyprotein (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAPB15E9.03c","synonyms":[{"name":"Spom972h-Tf2-5","type":"exact"},{"name":"retrotransposable element Tf2 155 kDa protein (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:P0CT38"}


id: GO:0071478
data:
  {"annotated_genes":["SJAG_01010","SJAG_02818","SJAG_02200","SJAG_02199","SJAG_00729","SJAG_05197","SJAG_01648","SJAG_00208","SJAG_04150","SJAG_04877","SJAG_00272","SJAG_04190","SJAG_02828","SJAG_01262","SJAG_03898","SJAG_02334","SJAG_02860","SJAG_00863","SJAG_02182","SJAG_05242","SJAG_00814"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[66396],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0009785"},{"annotations":[116246,116247],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0071483"},{"annotations":[105551,91318,99100,75923],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:1904161"},{"annotations":[102311,103374,91354,108822,90012,83824,93254,100557,109397,107317,91137,89709,85444,92124,70054],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0070914"}]},"cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an electromagnetic radiation stimulus. Electromagnetic radiation is a propagating wave in space with electric and magnetic components. These components oscillate at right angles to each other and to the direction of propagation.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to radiation","termid":"GO:0009314"},{"relation_name":"is_a","term_name":"cellular response to abiotic stimulus","termid":"GO:0071214"}],"gene_count":21,"genes_by_uniquename":{"SJAG_00208":null,"SJAG_00272":null,"SJAG_00729":null,"SJAG_00814":null,"SJAG_00863":null,"SJAG_01010":null,"SJAG_01262":null,"SJAG_01648":null,"SJAG_02182":null,"SJAG_02199":null,"SJAG_02200":null,"SJAG_02334":null,"SJAG_02818":null,"SJAG_02828":null,"SJAG_02860":null,"SJAG_03898":null,"SJAG_04150":null,"SJAG_04190":null,"SJAG_04877":null,"SJAG_05197":null,"SJAG_05242":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cellular response to radiation","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null,"GO_REF:0000108":null,"PMID:23873862":null},"synonyms":[{"name":"cellular response to electromagnetic radiation stimulus","type":"exact"},{"name":"cellular response to radiation stimulus","type":"exact"}],"termid":"GO:0071478","terms_by_termid":{"GO:0009785":null,"GO:0070914":null,"GO:0071483":null,"GO:1904161":null}}


id: FYPO:0007070
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which binding to a nuclear localization sequence (NLS) in a protein by a gene product (usually a protein) in a mutant does not occur. The affected gene product may be encoded by the mutated gene, or by a different gene.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"binding phenotype","termid":"FYPO:0001092"},{"relation_name":"is_a","term_name":"abolished molecular function","termid":"FYPO:0005446"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000707"},{"rel_name":"is_a","termid":"FYPO:0000652"}],"interesting_parent_ids":["FYPO:0000707","FYPO:0000652","FYPO:0001985"],"is_obsolete":false,"name":"abolished NLS binding","synonyms":[{"name":"NLS binding abolished","type":"exact"},{"name":"abolished nuclear localisation sequence binding","type":"exact"},{"name":"abolished nuclear localization sequence binding","type":"exact"},{"name":"abolished nuclear localization signal binding","type":"exact"}],"termid":"FYPO:0007070"}


id: PBO:0043710
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"COX6A1 pseudogene 7","termid":"PBO:0043710"}


id: GO:0034731
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"An SMN-Sm protein complex formed by the association of the methylated Sm proteins B/B', D3, E, F, and G, and Lsm10 and Lsm11, with the SMN complex. This complex forms Sm cores on U7 snRNA.","definition_xrefs":["PMID:17401408","PMID:12975319"],"direct_ancestors":[{"relation_name":"is_a","term_name":"SMN-Sm protein complex","termid":"GO:0034719"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0005737","GO:0005575","GO:0032991"],"is_obsolete":false,"name":"Lsm-containing SMN-Sm protein complex","synonyms":[{"name":"SMN-containing protein complex","type":"broad"}],"termid":"GO:0034731"}


id: PBO:0048161
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"frizzled class receptor 6","termid":"PBO:0048161"}


id: GO:0050604
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: AH(2) + O2 + taxa-4,11-diene = A + H2O + taxa-4(20),11-dien-5alpha-ol.","definition_xrefs":["RHEA:14049"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen","termid":"GO:0016705"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0016491","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"taxadiene 5-alpha-hydroxylase activity","secondary_identifiers":["MetaCyc:1.14.99.37-RXN","KEGG_REACTION:R06306","EC:1.14.14.176"],"synonyms":[{"name":"taxa-4,11-diene,hydrogen-donor:oxygen oxidoreductase (5alpha-hydroxylating)","type":"related"},{"name":"taxadiene 5a-hydroxylase activity","type":"exact"},{"name":"taxadiene 5alpha-hydroxylase activity","type":"related"}],"termid":"GO:0050604"}


id: PBO:0110459
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ER membrane O-mannosyltransferase Ogm4","termid":"PBO:0110459"}


id: GO:0160147
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: uridine(38/39/40) in tRNA = pseudouridine(38/39/40) in tRNA.","definition_xrefs":["EC:5.4.99.12"],"direct_ancestors":[{"relation_name":"is_a","term_name":"tRNA pseudouridine synthase activity","termid":"GO:0106029"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0140101"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016853"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0140098"}],"interesting_parent_ids":["GO:0003824","GO:0016853","GO:0003674","GO:0140098","GO:0140101"],"is_obsolete":false,"name":"tRNA pseudouridine(38-40) synthase activity","secondary_identifiers":["RHEA:22376","MetaCyc:TRNA-PSEUDOURIDINE-SYNTHASE-I-RXN"],"synonyms":[{"name":"PSUI activity","type":"exact"},{"name":"tRNA pseudouridylate synthase","type":"exact"}],"termid":"GO:0160147"}


id: PBO:0001181
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial ribosomal protein subunit L1 (predicted)","termid":"PBO:0001181"}


id: GO:0004452
data:
  {"annotated_genes":["SJAG_04307"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[74348],"is_not":false,"summary":null,"term":"GO:0004452"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: isopentenyl diphosphate = dimethylallyl diphosphate.","definition_xrefs":["RHEA:23284"],"direct_ancestors":[{"relation_name":"is_a","term_name":"intramolecular oxidoreductase activity, transposing C=C bonds","termid":"GO:0016863"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04307":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016853"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016853","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"isopentenyl-diphosphate delta-isomerase activity","references_by_uniquename":{"GO_REF:0000033":null},"secondary_identifiers":["MetaCyc:IPPISOM-RXN","KEGG_REACTION:R01123","EC:5.3.3.2","Reactome:R-HSA-191382"],"synonyms":[{"name":"IPP isomerase activity","type":"related"},{"name":"isopentenyl-diphosphate D-isomerase activity","type":"exact"},{"name":"isopentenyl-diphosphate delta3-delta2-isomerase activity","type":"related"},{"name":"isopentenylpyrophosphate delta-isomerase activity","type":"related"},{"name":"isopentenylpyrophosphate isomerase activity","type":"related"},{"name":"methylbutenylpyrophosphate isomerase activity","type":"related"}],"termid":"GO:0004452","terms_by_termid":{"GO:0004452":null}}


id: GO:0097123
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A protein complex consisting of cyclin A1 and cyclin-dependent kinase 2 (CDK2). Cyclins are characterized by periodicity in protein abundance throughout the cell cycle. Cyclin-dependent kinases represent a family of serine/threonine protein kinases that become active upon binding to a cyclin regulatory partner.","definition_xrefs":["GOC:so","PMID:15935619"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cyclin-dependent protein kinase holoenzyme complex","termid":"GO:0000307"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0005575","GO:0032991"],"is_obsolete":false,"name":"cyclin A1-CDK2 complex","termid":"GO:0097123"}


id: PBO:0050456
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"HOMER2 pseudogene 2","termid":"PBO:0050456"}


id: PBO:0072054
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein S10 pseudogene 24","termid":"PBO:0072054"}


id: GO:0022835
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Enables the transmembrane transfer of a solute by a channel that opens when a specific neurotransmitter has been bound by the channel complex or one of its constituent parts.","definition_xrefs":["ISBN:0815340729","GOC:mtg_transport"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ligand-gated channel activity","termid":"GO:0022834"},{"relation_name":"is_a","term_name":"neurotransmitter receptor activity","termid":"GO:0030594"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0038023"}],"interesting_parent_ids":["GO:0005215","GO:0003674","GO:0022857","GO:0038023"],"is_obsolete":false,"name":"transmitter-gated channel activity","synonyms":[{"name":"extracellular substance gated channel activity","type":"exact"},{"name":"neurotransmitter-gated channel activity","type":"exact"}],"termid":"GO:0022835"}


id: GO:0016524
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Combining with alpha-latrotoxin, a potent presynaptic neurotoxin, and transmitting the signal from one side of the membrane to the other to initiate a change in cell activity.","definition_xrefs":["GOC:signaling","PMID:10025961","GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"transmembrane signaling receptor activity","termid":"GO:0004888"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0038023"}],"interesting_parent_ids":["GO:0038023","GO:0003674"],"is_obsolete":false,"name":"latrotoxin receptor activity","synonyms":[{"name":"latrophilin","type":"narrow"}],"termid":"GO:0016524"}


id: GO:0018172
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The modification of protein tyrosine to peptidyl-L-3',4',5'-dihydroxyphenylalanine.","definition_xrefs":["RESID:AA0263"],"direct_ancestors":[{"relation_name":"is_a","term_name":"peptidyl-tyrosine modification","termid":"GO:0018212"},{"relation_name":"is_a","term_name":"peptidyl-tyrosine hydroxylation","termid":"GO:0018336"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"peptidyl-L-3',4',5'-trihydroxyphenylalanine biosynthetic process from peptidyl-tyrosine","synonyms":[{"name":"peptidyl-L-3',4',5'-trihydroxyphenylalanine anabolism from peptidyl-tyrosine","type":"exact"},{"name":"peptidyl-L-3',4',5'-trihydroxyphenylalanine formation from peptidyl-tyrosine","type":"exact"},{"name":"peptidyl-L-3',4',5'-trihydroxyphenylalanine synthesis from peptidyl-tyrosine","type":"exact"}],"termid":"GO:0018172"}


id: PBO:0066264
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RBMX pseudogene 4","termid":"PBO:0066264"}


id: FYPO:0005025
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which mitotic chromosome condensation does not occur in centromeric regions (i.e. adjacent to the kinetochores).","definition_xrefs":["PMID:21633354","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abolished mitotic chromosome condensation","termid":"FYPO:0003844"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000641"},{"rel_name":"is_a","termid":"FYPO:0000337"},{"rel_name":"is_a","termid":"FYPO:0000293"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"part_of","termid":"FYPO:0000631"},{"rel_name":"part_of","termid":"FYPO:0001320"},{"rel_name":"part_of","termid":"FYPO:0000337"},{"rel_name":"part_of","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"part_of","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000631"}],"interesting_parent_ids":["FYPO:0000641","FYPO:0001985","FYPO:0005447","FYPO:0000293","FYPO:0000337","FYPO:0001320","FYPO:0000631","FYPO:0000002"],"is_obsolete":false,"name":"abolished mitotic chromosome centromere condensation","synonyms":[{"name":"abolished chromosome centromere condensation during mitotic cell cycle","type":"related"},{"name":"abolished mitotic chromosome centromere condensation during vegetative growth","type":"exact"},{"name":"abolished mitotic chromosome condensation at centromere","type":"exact"},{"name":"mitotic chromosome condensation abolished at centromere","type":"exact"},{"name":"mitotic chromosome kinetochore condensation","type":"exact"}],"termid":"FYPO:0005025"}


id: GO:0051724
data:
  {"annotated_genes":["SJAG_04328"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[74852],"is_not":false,"summary":null,"term":"GO:0051724"}]},"cv_name":"molecular_function","definition":"Enables the transfer of NAD from one side of a membrane to the other.","definition_xrefs":["GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"adenine nucleotide transmembrane transporter activity","termid":"GO:0000295"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04328":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0005215","GO:0022857"],"is_obsolete":false,"name":"NAD transmembrane transporter activity","references_by_uniquename":{"GO_REF:0000033":null},"secondary_identifiers":["GO:1901368"],"synonyms":[{"name":"NAD (oxidized) transporter activity","type":"exact"},{"name":"NAD (reduced) transporter activity","type":"exact"},{"name":"NAD transporter activity","type":"related"},{"name":"NAD+ transporter activity","type":"exact"},{"name":"NADH transporter activity","type":"exact"},{"name":"nicotinamide adenine dinucleotide transmembrane transporter activity","type":"exact"},{"name":"oxidized NAD transporter activity","type":"exact"},{"name":"oxidized nicotinamide adenine dinucleotide transmembrane transporter activity","type":"exact"},{"name":"reduced NAD transporter activity","type":"exact"},{"name":"reduced nicotinamide adenine dinucleotide transmembrane transporter activity","type":"exact"}],"termid":"GO:0051724","terms_by_termid":{"GO:0051724":null}}


id: PBO:0086589
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Putative protein of unknown function; exhibits a two-hybrid interaction with Yhr151cp in a large-scale analysis","termid":"PBO:0086589"}


id: GO:2001263
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of C-C chemokine binding.","definition_xrefs":["GOC:obol"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of protein binding","termid":"GO:0043393"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of C-C chemokine binding","termid":"GO:2001263"}


id: PATO:0000885
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0000885 male fertility value (obsolete PATO:0000885)","termid":"PATO:0000885"}


id: PBO:0046672
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"estrogen related receptor gamma","termid":"PBO:0046672"}


id: GO:0080146
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: L-cysteine + H2O = ammonia + pyruvate + hydrogen sulfide + H+.","definition_xrefs":["PMID:19955263","MetaCyc:LCYSDESULF-RXN"],"direct_ancestors":[{"relation_name":"is_a","term_name":"carbon-sulfur lyase activity","termid":"GO:0016846"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016829"}],"interesting_parent_ids":["GO:0016829","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"L-cysteine desulfhydrase activity","secondary_identifiers":["EC:4.4.1.1","Reactome:R-HSA-1614591","RHEA:24931","Reactome:R-HSA-1614614"],"termid":"GO:0080146"}


id: GO:0071803
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the rate or extent of podosome assembly.","definition_xrefs":["GOC:mah","GOC:sl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of protein-containing complex assembly","termid":"GO:0031334"},{"relation_name":"is_a","term_name":"regulation of podosome assembly","termid":"GO:0071801"},{"relation_name":"is_a","term_name":"positive regulation of organelle assembly","termid":"GO:1902117"},{"relation_name":"positively_regulates","term_name":"podosome assembly","termid":"GO:0071800"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"positively_regulates","termid":"GO:0044085"},{"rel_name":"regulates","termid":"GO:0065003"},{"rel_name":"positively_regulates","termid":"GO:0065003"},{"rel_name":"regulates","termid":"GO:0044085"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0065003","GO:0044085"],"is_obsolete":false,"name":"positive regulation of podosome assembly","synonyms":[{"name":"activation of podosome assembly","type":"narrow"},{"name":"stimulation of podosome assembly","type":"narrow"},{"name":"up regulation of podosome assembly","type":"exact"},{"name":"up-regulation of podosome assembly","type":"exact"},{"name":"upregulation of podosome assembly","type":"exact"}],"termid":"GO:0071803"}


id: GO:1903109
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of transcription occuring in the mitochondrion.","definition_xrefs":["PMID:21357609","GOC:TermGenie","GO_REF:0000058"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of DNA-templated transcription","termid":"GO:0045893"},{"relation_name":"is_a","term_name":"regulation of mitochondrial transcription","termid":"GO:1903108"},{"relation_name":"positively_regulates","term_name":"mitochondrial transcription","termid":"GO:0006390"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006355"},{"rel_name":"positively_regulates","termid":"GO:0006351"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0140053"},{"rel_name":"regulates","termid":"GO:0006351"},{"rel_name":"regulates","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0140053","GO:0006355","GO:0006351","GO:0008150","GO:0010467"],"is_obsolete":false,"name":"positive regulation of mitochondrial transcription","synonyms":[{"name":"activation of mitochondrial transcription","type":"narrow"},{"name":"activation of transcription from mitochondrial promoter","type":"narrow"},{"name":"positive regulation of transcription from mitochondrial promoter","type":"exact"},{"name":"up regulation of mitochondrial transcription","type":"exact"},{"name":"up regulation of transcription from mitochondrial promoter","type":"exact"},{"name":"up-regulation of mitochondrial transcription","type":"exact"},{"name":"up-regulation of transcription from mitochondrial promoter","type":"exact"},{"name":"upregulation of mitochondrial transcription","type":"exact"},{"name":"upregulation of transcription from mitochondrial promoter","type":"exact"}],"termid":"GO:1903109"}


id: PBO:0041812
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"coactivator associated arginine methyltransferase 1","termid":"PBO:0041812"}


id: FYPO:0003215
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which the binding of one protein to another is normal (i.e. indistinguishable from wild type) during a cellular response to hydrogen peroxide. The relevant proteins may include the one encoded by the mutated gene, or may both be encoded by different genes.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal protein-protein interaction","termid":"FYPO:0000703"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0000702"}],"interesting_parent_ids":["FYPO:0000257","FYPO:0000652","FYPO:0000702"],"is_obsolete":false,"name":"normal protein-protein interaction during cellular response to hydrogen peroxide","synonyms":[{"name":"normal protein binding during cellular response to hydrogen peroxide","type":"exact"},{"name":"normal protein-protein interaction during cellular response to H2O2","type":"exact"}],"termid":"FYPO:0003215"}


id: PBO:0041749
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"calmodulin binding transcription activator 2","termid":"PBO:0041749"}


id: PBO:0064915
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PPP4R2 pseudogene 4","termid":"PBO:0064915"}


id: PBO:0073381
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SET nuclear proto-oncogene","termid":"PBO:0073381"}


id: PBO:0067498
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 634, pseudogene","termid":"PBO:0067498"}


id: FYPO:0006166
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell morphology phenotype observed in the vegetative growth phase of the life cycle in which a cell is inviable, branched, has more than one nucleus, and has a larger volume and is longer, than normal. In a swollen cell, both length and diameter may be greater than normal, although the cell is only considered elongated if the length:diameter ratio is also greater than normal.","definition_xrefs":["PomBase:mah","PomBase:jh"],"direct_ancestors":[{"relation_name":"is_a","term_name":"inviable elongated multinucleate vegetative cell","termid":"FYPO:0001493"},{"relation_name":"is_a","term_name":"inviable branched, swollen, elongated vegetative cell","termid":"FYPO:0004494"},{"relation_name":"is_a","term_name":"branched, swollen, elongated, multinucleate vegetative cell","termid":"FYPO:0006165"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000005"},{"rel_name":"output_of","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"has_part","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000004"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"has_part","termid":"FYPO:0000004"},{"rel_name":"output_of","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"has_part","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0000032"},{"rel_name":"has_part","termid":"FYPO:0000005"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0000032","FYPO:0001985","FYPO:0001320","FYPO:0000004","FYPO:0000005","FYPO:0000631","FYPO:0000002","FYPO:0005447"],"is_obsolete":false,"name":"inviable branched, swollen, elongated, multinucleate vegetative cell","synonyms":[{"name":"inviable branched, elongated, swollen, multinucleate vegetative cell","type":"exact"},{"name":"inviable branched, swollen, elongated, multinucleate cell during vegetative growth","type":"exact"},{"name":"inviable branched, swollen, elongated, multinucleate vegetative cell during mitotic cell cycle","type":"related"},{"name":"lethal; branched, swollen, elongated, multinucleate vegetative cell","type":"exact"}],"termid":"FYPO:0006166"}


id: FYPO:0005418
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which a gene product (usually a protein) that normally has ATPase activator activity has no activity in a mutant. The affected gene product may be encoded by the mutated gene, or by a different gene.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abolished molecular function","termid":"FYPO:0005446"},{"relation_name":"is_a","term_name":"catalytic activity regulator phenotype","termid":"FYPO:0007690"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000707"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000652"}],"interesting_parent_ids":["FYPO:0000707","FYPO:0001985","FYPO:0000652"],"is_obsolete":false,"name":"abolished ATPase activator activity","synonyms":[{"name":"ATPase activator activity abolished","type":"exact"}],"termid":"FYPO:0005418"}


id: PBO:0060348
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"myosin XVI","termid":"PBO:0060348"}


id: PBO:0055693
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"LIX1 and RIOK2 antisense RNA 1","termid":"PBO:0055693"}


id: GO:1901271
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of lipooligosaccharide.","definition_xrefs":["GOC:yaf","UniPathway:UPA00501","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"carbohydrate derivative biosynthetic process","termid":"GO:1901137"},{"relation_name":"is_a","term_name":"lipooligosaccharide metabolic process","termid":"GO:1901269"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"lipooligosaccharide biosynthetic process","synonyms":[{"name":"lipooligosaccharide anabolism","type":"exact"},{"name":"lipooligosaccharide biosynthesis","type":"exact"},{"name":"lipooligosaccharide formation","type":"exact"},{"name":"lipooligosaccharide synthesis","type":"exact"}],"termid":"GO:1901271"}


id: PBO:0029753
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abolished_protein_modification","termid":"PBO:0029753"}


id: PBO:0001954
data:
  {"annotation_feature_type":"gene","cv_name":"gene_ex","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transcriptionally regulates adg3","termid":"PBO:0001954"}


id: PBO:0065066
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"proteoglycan 4","termid":"PBO:0065066"}


id: PBO:0039766
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"aquaporin 1 (Colton blood group)","termid":"PBO:0039766"}


id: GO:0071553
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Combining with a pyrimidine nucleotide and transmitting the signal across the membrane by activating an associated G-protein; promotes the exchange of GDP for GTP on the alpha subunit of a heterotrimeric G-protein complex.","definition_xrefs":["PMID:12369950","PMID:10736418","PMID:15796906","GOC:sl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"G protein-coupled receptor activity","termid":"GO:0004930"},{"relation_name":"is_a","term_name":"nucleotide receptor activity","termid":"GO:0016502"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0038023"}],"interesting_parent_ids":["GO:0003674","GO:0038023"],"is_obsolete":false,"name":"G protein-coupled pyrimidinergic nucleotide receptor activity","synonyms":[{"name":"G protein coupled pyrimidinergic nucleotide receptor activity","type":"exact"},{"name":"G-protein coupled pyrimidinergic nucleotide receptor activity","type":"exact"},{"name":"pyrimidinergic nucleotide receptor activity, G protein coupled","type":"exact"},{"name":"pyrimidinergic nucleotide receptor activity, G-protein coupled","type":"exact"}],"termid":"GO:0071553"}


id: GO:0010004
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A complex and coordinated series of cellular movements, including germ band extension, that occurs at the end of cleavage during embryonic development. An example of this process is found in Drosophila melanogaster.","definition_xrefs":["GOC:go_curators","GOC:mtg_sensu"],"direct_ancestors":[{"relation_name":"is_a","term_name":"gastrulation with mouth forming first","termid":"GO:0001703"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"gastrulation involving germ band extension","termid":"GO:0010004"}


id: PBO:0088952
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DUF2406 family conserved fungal protein","termid":"PBO:0088952"}


id: PBO:0076984
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"THAP domain containing 2","termid":"PBO:0076984"}


id: PBO:0080279
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"vomeronasal 1 receptor 42 pseudogene","termid":"PBO:0080279"}


id: SO:0000397
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"U6atac_snRNA is an snRNA required for the splicing of the minor U12-dependent class of eukaryotic nuclear introns. It forms a base paired complex with U4atac_snRNA (SO:0000394).","direct_ancestors":[{"relation_name":"is_a","term_name":"snRNA","termid":"SO:0000274"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"U6atac_snRNA","synonyms":[{"name":"U6atac small nuclear RNA","type":"exact"},{"name":"U6atac snRNA","type":"exact"},{"name":"snRNA U6atac","type":"exact"}],"termid":"SO:0000397"}


id: GO:0015172
data:
  {"annotated_genes":["SJAG_00626","SJAG_03256","SJAG_00522"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[92680],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0015183"},{"annotations":[94385,77851,92681],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0005313"}]},"cv_name":"molecular_function","definition":"Enables the transfer of acidic amino acids from one side of a membrane to the other. Acidic amino acids have side chains with a negative charge at pH 7.3.","definition_xrefs":["GOC:ai","GOC:mtg_transport","ISBN:0815340729"],"direct_ancestors":[{"relation_name":"is_a","term_name":"amino acid transmembrane transporter activity","termid":"GO:0015171"}],"gene_count":3,"genes_by_uniquename":{"SJAG_00522":null,"SJAG_00626":null,"SJAG_03256":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0022857","GO:0005215","GO:0003674"],"is_obsolete":false,"name":"acidic amino acid transmembrane transporter activity","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"secondary_identifiers":["Reactome:R-HSA-372448"],"synonyms":[{"name":"acidic amino acid transporter activity","type":"broad"}],"termid":"GO:0015172","terms_by_termid":{"GO:0005313":null,"GO:0015183":null}}


id: PBO:0084039
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"GPI-anchored protein involved in cell wall remodeling; involved in the assembly of the cell wall chitin-glucan structure and repair of damage caused by the antifungal agent polyhexamethylene biguanide; role in the cell wall integrity pathway; expression is upregulated in response to cell wall stress; transported to the cell surface after Pmt1p-Pmt2p-mediated O-mannosylation, colocalizing with bud scars","termid":"PBO:0084039"}


id: PBO:0064334
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"phospholipid scramblase 4","termid":"PBO:0064334"}


id: PBO:0045231
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DnaJ heat shock protein family (Hsp40) member C18","termid":"PBO:0045231"}


id: GO:0050004
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: UDP-glucose + isoflavone = UDP + isoflavone 7-O-beta-D-glucoside.","definition_xrefs":["MetaCyc:ISOFLAVONE-7-O-GLUCOSYLTRANSFERASE-RXN","EC:2.4.1.170"],"direct_ancestors":[{"relation_name":"is_a","term_name":"UDP-glucosyltransferase activity","termid":"GO:0035251"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016757"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016757","GO:0016740"],"is_obsolete":false,"name":"isoflavone 7-O-glucosyltransferase activity","secondary_identifiers":["RHEA:56344"],"synonyms":[{"name":"UDP-glucose:isoflavone 7-O-beta-D-glucosyltransferase activity","type":"related"},{"name":"UDPglucose-flavonoid 7-O-glucosyltransferase activity","type":"related"},{"name":"UDPglucose:isoflavone 7-O-beta-D-glucosyltransferase activity","type":"related"},{"name":"UDPglucose:isoflavone 7-O-glucosyltransferase activity","type":"related"},{"name":"uridine diphosphoglucose-isoflavone 7-O-glucosyltransferase activity","type":"related"}],"termid":"GO:0050004"}


id: PBO:0044375
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chymosin, pseudogene","termid":"PBO:0044375"}


id: PBO:0080040
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ubiquitin specific peptidase 17 like family member 26","termid":"PBO:0080040"}


id: SO:0000024
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A loop in ribosomal RNA containing the sites of attack for ricin and sarcin.","direct_ancestors":[{"relation_name":"is_a","term_name":"asymmetric_RNA_internal_loop","termid":"SO:0000021"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sarcin_like_RNA_motif","synonyms":[{"name":"sarcin like RNA motif","type":"exact"},{"name":"sarcin/ricin RNA domain","type":"exact"},{"name":"sarcin/ricin domain","type":"exact"},{"name":"sarcin/ricin loop","type":"exact"}],"termid":"SO:0000024"}


id: PR:A6X992
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPCC16C4.21 gene.","definition_xrefs":["UniProtKB:A6X992","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized protein C16C4.21 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC16C4.21","synonyms":[{"name":"Spom972h-SPCC16C4.21","type":"exact"}],"termid":"PR:A6X992"}


id: PBO:0030061
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_protein_localization_to_spindle_pole_body","termid":"PBO:0030061"}


id: GO:0018411
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The modification of a protein by amino acid glucuronidation.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein modification process","termid":"GO:0036211"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"protein glucuronidation","synonyms":[{"name":"protein amino acid glucuronidation","type":"exact"}],"termid":"GO:0018411"}


id: PBO:0072222
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein S19 pseudogene 5","termid":"PBO:0072222"}


id: FYPO:0004667
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which cohesion between sister chromatids is normal (i.e. indistinguishable from wild type) at the centromeric regions during meiosis.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal meiotic sister chromatid cohesion","termid":"FYPO:0002094"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000257"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0000257"],"is_obsolete":false,"name":"normal meiotic sister chromatid cohesion at centromere","synonyms":[{"name":"normal meiotic sister chromatid cohesion, centromeric","type":"exact"},{"name":"normal sister chromatid cohesion at centromere during meiosis","type":"exact"}],"termid":"FYPO:0004667"}


id: GO:0032199
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The synthesis of DNA from an RNA transposon intermediate.","definition_xrefs":["GOC:txnOH","ISBN:1555812090","GOC:jp"],"gene_count":0,"genotype_count":0,"name":"obsolete reverse transcription involved in RNA-mediated transposition (obsolete GO:0032199)","synonyms":[{"name":"reverse transcription during retrotransposition","type":"exact"}],"termid":"GO:0032199"}


id: GO:0090471
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 9,15,9'-tricis-zeta-carotene = 9,9'-dicis-zeta-carotene.","definition_xrefs":["EC:5.2.1.12"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cis-trans isomerase activity","termid":"GO:0016859"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016853"}],"interesting_parent_ids":["GO:0003824","GO:0016853","GO:0003674"],"is_obsolete":false,"name":"9,15,9'-tri-cis-zeta-carotene isomerase activity","synonyms":[{"name":"9,15,9'-tricis-zeta-carotene cis-trans-isomerase","type":"related"}],"termid":"GO:0090471"}


id: PBO:0060309
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"myosin regulatory light chain interacting protein","termid":"PBO:0060309"}


id: GO:1904183
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of pyruvate dehydrogenase activity.","definition_xrefs":["GOC:TermGenie","GOC:dph","PMID:25525879","GO_REF:0000059"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of oxidoreductase activity","termid":"GO:0051354"},{"relation_name":"is_a","term_name":"regulation of pyruvate dehydrogenase activity","termid":"GO:1904182"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of pyruvate dehydrogenase activity","synonyms":[{"name":"down regulation of pyruvate dehydrogenase activity","type":"exact"},{"name":"down regulation of pyruvic acid dehydrogenase activity","type":"exact"},{"name":"down regulation of pyruvic dehydrogenase activity","type":"exact"},{"name":"down-regulation of pyruvate dehydrogenase activity","type":"exact"},{"name":"down-regulation of pyruvic acid dehydrogenase activity","type":"exact"},{"name":"down-regulation of pyruvic dehydrogenase activity","type":"exact"},{"name":"downregulation of pyruvate dehydrogenase activity","type":"exact"},{"name":"downregulation of pyruvic acid dehydrogenase activity","type":"exact"},{"name":"downregulation of pyruvic dehydrogenase activity","type":"exact"},{"name":"inhibition of pyruvate dehydrogenase activity","type":"narrow"},{"name":"inhibition of pyruvic acid dehydrogenase activity","type":"narrow"},{"name":"inhibition of pyruvic dehydrogenase activity","type":"narrow"},{"name":"negative regulation of pyruvic acid dehydrogenase activity","type":"exact"},{"name":"negative regulation of pyruvic dehydrogenase activity","type":"exact"}],"termid":"GO:1904183"}


id: GO:0061503
data:
  {"annotated_genes":["SJAG_02084"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[78703],"is_not":false,"summary":null,"term":"GO:0061503"}]},"cv_name":"molecular_function","definition":"Catalysis of the ATP-dependent dehydration of t6A to form cyclic t6A.","definition_xrefs":["GOC:dph","PMID:23242255"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hydro-lyase activity","termid":"GO:0016836"},{"relation_name":"is_a","term_name":"catalytic activity, acting on a tRNA","termid":"GO:0140101"}],"gene_count":1,"genes_by_uniquename":{"SJAG_02084":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0140101"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016829"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0140098"}],"interesting_parent_ids":["GO:0003674","GO:0140101","GO:0016829","GO:0003824","GO:0140098"],"is_obsolete":false,"name":"tRNA threonylcarbamoyladenosine dehydratase","references_by_uniquename":{"GO_REF:0000033":null},"termid":"GO:0061503","terms_by_termid":{"GO:0061503":null}}


id: GO:1901910
data:
  {"annotated_genes":["SJAG_04870"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[77864],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1901911"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways involving adenosine 5'-(hexahydrogen pentaphosphate).","definition_xrefs":["PMID:10090752","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"purine ribonucleotide metabolic process","termid":"GO:0009150"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04870":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0055086"}],"interesting_parent_ids":["GO:0008150","GO:0055086","GO:0044281"],"is_obsolete":false,"name":"adenosine 5'-(hexahydrogen pentaphosphate) metabolic process","references_by_uniquename":{"GO_REF:0000033":null},"synonyms":[{"name":"adenosine 5'-(hexahydrogen pentaphosphate) metabolism","type":"exact"}],"termid":"GO:1901910","terms_by_termid":{"GO:1901911":null}}


id: GO:0005024
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Combining with a transforming growth factor beta (TGFbeta) and transmitting the signal from one side of the membrane to the other to initiate a change in cell activity by catalysis of the reaction: ATP protein serine = ADP + protein serine phosphate, and ATP + protein threonine = ADP + protein threonine phosphate.","definition_xrefs":["GOC:signaling","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"transmembrane receptor protein serine/threonine kinase activity","termid":"GO:0004675"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016301"},{"rel_name":"is_a","termid":"GO:0004672"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0140096"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0038023"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0038023","GO:0016740","GO:0004672","GO:0016301","GO:0140096"],"is_obsolete":false,"name":"transforming growth factor beta receptor activity","synonyms":[{"name":"TGF-beta receptor activity","type":"exact"},{"name":"TGFbeta receptor activity","type":"exact"},{"name":"TGFbeta-activated receptor activity","type":"exact"},{"name":"TGFbetaR","type":"exact"},{"name":"transforming growth factor beta-activated receptor activity","type":"exact"}],"termid":"GO:0005024"}


id: PR:Q9P7F1
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPAC2E1P3.05c gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q9P7F1"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"carbohydrate-binding domain-containing protein C2E1P3.05c (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC2E1P3.05c","synonyms":[{"name":"Spom972h-SPAC2E1P3.05c","type":"exact"}],"termid":"PR:Q9P7F1"}


id: SO:0002174
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A deletion that is the result of base-calling or assembly error.","direct_ancestors":[{"relation_name":"is_a","term_name":"sequence_alteration_artifact","termid":"SO:0002172"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"deletion_artifact","synonyms":[{"name":"deletion artifact","type":"exact"}],"termid":"SO:0002174"}


id: PBO:0057955
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 3678","termid":"PBO:0057955"}


id: PR:O94267
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A FACT complex subunit SPT16 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx","OMA:SCHPO03804"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"FACT complex subunit spt16 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBP8B7.19","secondary_identifiers":["UniProtKB:O94267"],"synonyms":[{"name":"Spom972h-SUPT16H","type":"exact"},{"name":"facilitates chromatin transcription complex subunit spt16 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:O94267"}


id: PBO:0014576
data:
  {"annotation_feature_type":"gene","cv_name":"complementation","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"functionally complemented by H. sapiens CLNS1A","termid":"PBO:0014576"}


id: PBO:0039741
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"apolipoprotein L3","termid":"PBO:0039741"}


id: GO:0072567
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The appearance of chemokine (C-X-C motif) ligand 2 due to biosynthesis or secretion following a cellular stimulus, resulting in an increase in its intracellular or extracellular levels.","definition_xrefs":["GOC:BHF","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"chemokine production","termid":"GO:0032602"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0010467","GO:0008150"],"is_obsolete":false,"name":"chemokine (C-X-C motif) ligand 2 production","synonyms":[{"name":"CXCL2 production","type":"exact"},{"name":"MIP-2 production","type":"exact"},{"name":"MIP2 production","type":"exact"},{"name":"SCYB2 production","type":"exact"}],"termid":"GO:0072567"}


id: PR:Q9P6N8
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"An ATP-dependent RNA helicase DDX47 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO01084","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ATP-dependent rRNA helicase rrp3 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC823.08c","secondary_identifiers":["UniProtKB:Q9P6N8"],"synonyms":[{"name":"Spom972h-DDX47","type":"exact"}],"termid":"PR:Q9P6N8"}


id: GO:0030327
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of prenylated proteins.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"modification-dependent protein catabolic process","termid":"GO:0019941"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0030163"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0030163","GO:0008150"],"is_obsolete":false,"name":"prenylated protein catabolic process","synonyms":[{"name":"prenylated protein breakdown","type":"exact"},{"name":"prenylated protein catabolism","type":"exact"},{"name":"prenylated protein degradation","type":"exact"}],"termid":"GO:0030327"}


id: FYECO:0000141
data:
  {"annotation_feature_type":"gene","cv_name":"fission_yeast_phenotype_condition","definition":"The experiment was carried out in vivo.","definition_xrefs":["PomBase:al"],"direct_ancestors":[{"relation_name":"is_a","term_name":"grouping experimental environment","termid":"FYECO:0000132"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"in vivo","termid":"FYECO:0000141"}


id: GO:0000323
data:
  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id: FYPO:0004756
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A regulation phenotype in which regulation of the initiation of DNA-dependent DNA replication is abnormal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation phenotype","termid":"FYPO:0000145"},{"relation_name":"is_a","term_name":"abnormal cellular process","termid":"FYPO:0000628"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000002","FYPO:0005447"],"is_obsolete":false,"name":"abnormal regulation of DNA replication initiation","synonyms":[{"name":"abnormal regulation of DNA replication initiation during mitotic cell cycle","type":"related"},{"name":"abnormal regulation of DNA-dependent DNA replication initiation","type":"exact"}],"termid":"FYPO:0004756"}


id: GO:0035021
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of Rac protein signal transduction.","definition_xrefs":["GOC:bf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of Rac protein signal transduction","termid":"GO:0035020"},{"relation_name":"is_a","term_name":"negative regulation of small GTPase mediated signal transduction","termid":"GO:0051058"},{"relation_name":"negatively_regulates","term_name":"Rac protein signal transduction","termid":"GO:0016601"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"negatively_regulates","termid":"GO:0023052"},{"rel_name":"regulates","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"negative regulation of Rac protein signal transduction","synonyms":[{"name":"down regulation of Rac protein signal transduction","type":"exact"},{"name":"down-regulation of Rac protein signal transduction","type":"exact"},{"name":"downregulation of Rac protein signal transduction","type":"exact"},{"name":"inhibition of Rac protein signal transduction","type":"narrow"}],"termid":"GO:0035021"}


id: GO:2000273
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of signaling receptor activity.","definition_xrefs":["GOC:obol"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of signaling receptor activity","termid":"GO:0010469"},{"relation_name":"is_a","term_name":"positive regulation of molecular function","termid":"GO:0044093"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"positive regulation of signaling receptor activity","synonyms":[{"name":"positive regulation of signalling receptor activity","type":"exact"}],"termid":"GO:2000273"}


id: PBO:0038808
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ADAM metallopeptidase domain 12","termid":"PBO:0038808"}


id: GO:0018344
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The covalent attachment of a geranylgeranyl group to a protein.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein prenylation","termid":"GO:0018342"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"protein geranylgeranylation","secondary_identifiers":["GO:0018348"],"synonyms":[{"name":"C-terminal protein geranylgeranylation","type":"narrow"},{"name":"protein amino acid geranylgeranylation","type":"exact"}],"termid":"GO:0018344"}


id: PBO:0089676
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"major facilitator family transmembrane transporter Mug111","termid":"PBO:0089676"}


id: GO:0075282
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of uredinium development, a process that leads to the formation of a reddish, pustule-like structure formed by a rust fungus and consisting of uredospores.","definition_xrefs":["GOC:pamgo_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of spore-bearing organ development","termid":"GO:0075262"},{"relation_name":"is_a","term_name":"regulation of uredinium development","termid":"GO:0075280"},{"relation_name":"negatively_regulates","term_name":"uredinium development","termid":"GO:0075279"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of uredinium development","termid":"GO:0075282"}


id: PBO:0080567
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"WD repeat and FYVE domain containing 2","termid":"PBO:0080567"}


id: PBO:0066170
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RBIS pseudogene 3","termid":"PBO:0066170"}


id: PR:Q9UUH0
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A metallophosphoesterase 1 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO00144","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized protein C630.12 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC630.12","secondary_identifiers":["UniProtKB:Q9UUH0"],"synonyms":[{"name":"Spom972h-MPPE1","type":"exact"}],"termid":"PR:Q9UUH0"}


id: GO:1990842
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a disturbance in organismal or cellular homeostasis in the embryo or fetus during pregnancy.","definition_xrefs":["PMID:22738222"],"gene_count":0,"genotype_count":0,"name":"obsolete response to prenatal stress (obsolete GO:1990842)","synonyms":[{"name":"response to PNS","type":"exact"}],"termid":"GO:1990842"}


id: PBO:0046114
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"eukaryotic translation initiation factor 4E binding protein 1 pseudogene 1","termid":"PBO:0046114"}


id: GO:0060912
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process involved in the specification of cardiac cell identity. Once specification has taken place, a cell will be committed to differentiate down a specific pathway if left in its normal environment.","definition_xrefs":["GOC:mtg_heart"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell fate specification","termid":"GO:0001708"},{"relation_name":"part_of","term_name":"cardiac cell fate commitment","termid":"GO:0060911"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cardiac cell fate specification","synonyms":[{"name":"cardiocyte cell fate specification","type":"exact"}],"termid":"GO:0060912"}


id: GO:0061218
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that decreases the rate, frequency or extent of mesonephros development. Mesonephros development is the process whose specific outcome is the progression of the mesonephros over time, from its formation to the mature structure. The mesonephros is an organ that filters the blood and excretes the end products of body metabolism in the form of urine.","definition_xrefs":["GOC:mtg_kidney_jan10"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of mesonephros development","termid":"GO:0061217"},{"relation_name":"is_a","term_name":"negative regulation of kidney development","termid":"GO:0090185"},{"relation_name":"negatively_regulates","term_name":"mesonephros development","termid":"GO:0001823"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of mesonephros development","termid":"GO:0061218"}


id: PBO:0047612
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"fumarate hydratase pseudogene 1","termid":"PBO:0047612"}


id: PBO:0071257
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L23 pseudogene 2","termid":"PBO:0071257"}


id: PBO:0087898
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Transcription factor; involved in cell-type-specific transcription and pheromone response; plays a central role in the formation of both repressor and activator complexes; relocalizes to the cytosol in response to hypoxia","termid":"PBO:0087898"}


