# terms

id: GO:0010590
data:
  {"annotated_genes":["SJAG_01436","SJAG_02366","SJAG_01774","SJAG_02645"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[89262,96296],"is_not":false,"summary":null,"term":"GO:0010590"},{"annotations":[85236,103137],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:2001043"}]},"cv_name":"biological_process","definition":"Any process that modulates the rate, frequency or extent of the process of physically separating the septal cell wall material by enzymatic digestion, that occurs after daughter cells are separated by cytokinesis.","definition_xrefs":["PMID:21246752","PMID:19959363","PMID:22786806","GOC:mtg_cell_cycle","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of cellular process","termid":"GO:0050794"},{"relation_name":"regulates","term_name":"septum digestion after cytokinesis","termid":"GO:0000920"}],"gene_count":4,"genes_by_uniquename":{"SJAG_01436":null,"SJAG_01774":null,"SJAG_02366":null,"SJAG_02645":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of septum digestion after cytokinesis","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["GO:2001041","GO:1902467"],"synonyms":[{"name":"regulation of cell separation after cytokinesis","type":"related"},{"name":"regulation of cell separation following cytokinesis","type":"related"},{"name":"regulation of mitotic cytokinetic cell separation","type":"exact"}],"termid":"GO:0010590","terms_by_termid":{"GO:0010590":null,"GO:2001043":null}}


id: FYPO:0003117
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of reactive oxygen species (ROS) measured in a cell is higher than normal during a cellular response to plumbagin.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased cellular reactive oxygen species level during vegetative growth","termid":"FYPO:0003004"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001320","FYPO:0001985"],"is_obsolete":false,"name":"increased cellular reactive oxygen species level during cellular response to plumbagin","synonyms":[{"name":"increased ROS accumulation during cellular response to plumbagin","type":"related"},{"name":"increased cellular ROS accumulation during cellular response to plumbagin","type":"related"},{"name":"increased cellular ROS level during cellular response to plumbagin","type":"exact"},{"name":"increased cellular reactive oxygen species accumulation during cellular response to plumbagin","type":"related"},{"name":"increased cellular reactive oxygen species level during cellular response to plumbagin during mitotic cell cycle","type":"related"},{"name":"increased cellular reactive oxygen species level during cellular response to plumbagin during vegetative growth","type":"exact"}],"termid":"FYPO:0003117"}


id: PBO:0058178
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 4472-2","termid":"PBO:0058178"}


id: PBO:0044927
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"diacylglycerol kinase epsilon","termid":"PBO:0044927"}


id: PBO:0033782
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_site-specific_DNA_replication_termination_at_RTS1_barrier","termid":"PBO:0033782"}


id: GO:0051008
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to Hsp27 proteins, a lightweight heat shock protein.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"heat shock protein binding","termid":"GO:0031072"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005515"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005488"}],"interesting_parent_ids":["GO:0003674","GO:0005515","GO:0005488"],"is_obsolete":false,"name":"Hsp27 protein binding","termid":"GO:0051008"}


id: GO:0007338
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The union of male and female gametes to form a zygote.","definition_xrefs":["GOC:mtg_sensu","GOC:ems"],"direct_ancestors":[{"relation_name":"is_a","term_name":"fertilization","termid":"GO:0009566"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"single fertilization","synonyms":[{"name":"zygote biosynthesis","type":"related"},{"name":"zygote formation","type":"related"}],"termid":"GO:0007338"}


id: MOD:01099
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-aspartic acid residue to succinyl beta-aspartyl anhydride.","definition_xrefs":["DeltaMass:244"],"direct_ancestors":[{"relation_name":"is_a","term_name":"modified L-aspartic acid residue","termid":"MOD:00904"},{"relation_name":"is_a","term_name":"succinylated residue","termid":"MOD:01029"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:00649"}],"interesting_parent_ids":["MOD:00649"],"is_obsolete":false,"name":"succinyl beta-aspartyl anhydride","synonyms":[{"name":"succinyl aspartamyl","type":"exact"}],"termid":"MOD:01099"}


id: PBO:0087446
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Subunit I of cytochrome c oxidase (Complex IV); Complex IV is the terminal member of the mitochondrial inner membrane electron transport chain; one of three mitochondrially-encoded subunits; number of introns in different strains varies from 2 to 8, with most strains having 4-6 introns","termid":"PBO:0087446"}


id: PBO:0040251
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"autophagy related 7","termid":"PBO:0040251"}


id: PBO:0083378
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Dubious open reading frame; unlikely to encode a functional protein, based on available experimental and comparative sequence data; partially overlaps 5' end of the verified, essential gene YAH1/YPL252C","termid":"PBO:0083378"}


id: GO:0009569
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"Plant storage body for amylose and amylopectin, 1-100um in diameter, and located in chloroplasts. Also contains small amounts of enzymes, amino acids, lipids and nucleic acids. The shape of the grain varies widely amongst species, but is often spherical or disk-shaped.","definition_xrefs":["ISBN:0198506732","GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"starch grain","termid":"GO:0043036"},{"relation_name":"part_of","term_name":"chloroplast","termid":"GO:0009507"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005737"}],"interesting_parent_ids":["GO:0005737","GO:0005575"],"is_obsolete":false,"name":"chloroplast starch grain","synonyms":[{"name":"chloroplast starch granule","type":"exact"}],"termid":"GO:0009569"}


id: GO:1903498
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which a relatively unspecialized cell acquires the specialized features of a bundle sheath cell.","definition_xrefs":["GOC:tb","GOC:TermGenie","PMID:24517883","GO_REF:0000086"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell differentiation","termid":"GO:0030154"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"bundle sheath cell differentiation","termid":"GO:1903498"}


id: PBO:0085853
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the mitochondrion; mtc3 is synthetically sick with cdc13-1","termid":"PBO:0085853"}


id: PR:O14217
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A mitochondrial import receptor subunit TOM70 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO01015","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial import receptor subunit tom70 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC6B12.12","secondary_identifiers":["UniProtKB:O14217"],"synonyms":[{"name":"Spom972h-TOMM70A","type":"exact"},{"name":"translocase of outer membrane 40 kDa subunit (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:O14217"}


id: GO:0009371
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process involving pheromones that activates or increases the rate of transcription.","definition_xrefs":["GOC:go_curators"],"gene_count":0,"genotype_count":0,"name":"obsolete positive regulation of transcription by pheromones (obsolete GO:0009371)","synonyms":[{"name":"activation of transcription by pheromones","type":"narrow"},{"name":"stimulation of transcription by pheromones","type":"narrow"},{"name":"up regulation of transcription by pheromones","type":"exact"},{"name":"up-regulation of transcription by pheromones","type":"exact"},{"name":"upregulation of transcription by pheromones","type":"exact"}],"termid":"GO:0009371"}


id: PBO:0055057
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2473","termid":"PBO:0055057"}


id: PBO:0072180
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein S16 pseudogene 7","termid":"PBO:0072180"}


id: PR:Q9P3E5
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPAC750.06c gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q9P3E5"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"UPF0494 membrane protein C750.06c (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC750.06c","synonyms":[{"name":"Spom972h-SPAC750.06c","type":"exact"}],"termid":"PR:Q9P3E5"}


id: GO:0019652
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The anaerobic enzymatic conversion of lactate to propionate, concomitant with the oxidation of lactate to acetate and CO2 and yielding energy in the form of adenosine triphosphate (ATP).","definition_xrefs":["GOC:jl","MetaCyc:PROPFERM-PWY"],"direct_ancestors":[{"relation_name":"is_a","term_name":"propionate metabolic process","termid":"GO:0019541"},{"relation_name":"is_a","term_name":"non-glycolytic fermentation","termid":"GO:0019662"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006091"},{"rel_name":"is_a","termid":"GO:0006629"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0008150","GO:0006629","GO:0044281","GO:0006091"],"is_obsolete":false,"name":"lactate fermentation to propionate and acetate","synonyms":[{"name":"acrylate pathway","type":"exact"},{"name":"nonrandomizing pathway","type":"exact"},{"name":"propionate fermentation","type":"exact"}],"termid":"GO:0019652"}


id: PBO:0091900
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"wtf antidote-like meiotic drive suppressor Wtf5","termid":"PBO:0091900"}


id: FYPO:0006909
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell cycle phenotype in which the G1/S transition of the mitotic cell cycle occurs at a smaller cell size than normal after the cell has been arrested in G1 phase due to nitrogen starvation. The cell remains arrested in G1.","definition_xrefs":["PomBase:mah","PMID:872890"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal mitotic G1/S phase transition","termid":"FYPO:0000394"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000631"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0001320","FYPO:0000631","FYPO:0005447","FYPO:0000002"],"is_obsolete":false,"name":"mitotic G1/S phase transition at small cell size","synonyms":[{"name":"G1/S phase transition at small cell size during mitotic cell cycle","type":"exact"},{"name":"mitotic G1/S phase transition at abnormally small cell size","type":"exact"},{"name":"mitotic G1/S phase transition at small cell size during vegetative growth","type":"exact"},{"name":"small cell size at G1/S transition of mitotic cell cycle","type":"exact"}],"termid":"FYPO:0006909"}


id: FYPO:0001978
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A spindle phenotype in which the mitotic spindle is not straight, but instead forms an angle where microtubules from opposite poles interdigitate.","definition_xrefs":["PMID:1538784","PMID:2145514","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal bipolar mitotic spindle","termid":"FYPO:0001574"},{"relation_name":"is_a","term_name":"abnormal spindle morphology","termid":"FYPO:0003607"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"output_of","termid":"FYPO:0000054"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000120"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0002399"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001320","FYPO:0000054","FYPO:0005447","FYPO:0001985","FYPO:0000120","FYPO:0002399"],"is_obsolete":false,"name":"bent mitotic spindle","synonyms":[{"name":"V-shaped bipolar mitotic spindle","type":"exact"},{"name":"bent bipolar mitotic spindle","type":"exact"},{"name":"bent mitotic spindle during vegetative growth","type":"exact"},{"name":"bent spindle during mitotic cell cycle","type":"related"}],"termid":"FYPO:0001978"}


id: GO:0031538
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of chemical reactions and pathways involving anthocyanins.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of metabolic process","termid":"GO:0009892"},{"relation_name":"is_a","term_name":"regulation of anthocyanin metabolic process","termid":"GO:0031537"},{"relation_name":"negatively_regulates","term_name":"anthocyanin-containing compound metabolic process","termid":"GO:0046283"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of anthocyanin metabolic process","synonyms":[{"name":"down regulation of anthocyanin metabolic process","type":"exact"},{"name":"down-regulation of anthocyanin metabolic process","type":"exact"},{"name":"downregulation of anthocyanin metabolic process","type":"exact"},{"name":"inhibition of anthocyanin metabolic process","type":"narrow"},{"name":"negative regulation of anthocyanin metabolism","type":"exact"}],"termid":"GO:0031538"}


id: PR:Q10081
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein ElaA that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO00033","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"UPF0039 protein C11D3.02c (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC11D3.02c","secondary_identifiers":["UniProtKB:Q10081"],"synonyms":[{"name":"Spom972h-elaA","type":"exact"}],"termid":"PR:Q10081"}


id: PBO:0041628
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"calcium voltage-gated channel subunit alpha1 B","termid":"PBO:0041628"}


id: GO:1903831
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any signal transduction that is involved in cellular response to ammonium ion.","definition_xrefs":["GO_REF:0000060","GOC:TermGenie","PMID:16297994"],"direct_ancestors":[{"relation_name":"is_a","term_name":"signal transduction","termid":"GO:0007165"},{"relation_name":"part_of","term_name":"cellular response to ammonium ion","termid":"GO:0071242"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"signal transduction involved in cellular response to ammonium ion","synonyms":[{"name":"signaling cascade involved in cellular response to ammonium ion","type":"narrow"},{"name":"signaling pathway involved in cellular response to ammonium ion","type":"related"},{"name":"signalling cascade involved in cellular response to ammonium ion","type":"narrow"},{"name":"signalling pathway involved in cellular response to ammonium ion","type":"related"}],"termid":"GO:1903831"}


id: GO:0007198
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"An adenylate cyclase-inhibiting G protein-coupled receptor signaling pathway initiated by serotonin binding to its receptor, and ending with the regulation of a downstream cellular process.","definition_xrefs":["GOC:dph","GOC:mah","GOC:signaling","GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"adenylate cyclase-inhibiting G protein-coupled receptor signaling pathway","termid":"GO:0007193"},{"relation_name":"is_a","term_name":"G protein-coupled serotonin receptor signaling pathway","termid":"GO:0098664"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"adenylate cyclase-inhibiting serotonin receptor signaling pathway","synonyms":[{"name":"inhibition of adenylate cyclase activity by serotonin receptor signaling pathway","type":"related"},{"name":"inhibition of adenylate cyclase activity by serotonin receptor signalling pathway","type":"related"},{"name":"serotonin receptor, adenylate cyclase inhibiting pathway","type":"exact"},{"name":"serotonin receptor, adenylyl cyclase inhibiting pathway","type":"related"}],"termid":"GO:0007198"}


id: PBO:0065487
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"proteasome activator subunit 2 pseudogene 6","termid":"PBO:0065487"}


id: PBO:0048754
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glycerate kinase","termid":"PBO:0048754"}


id: PBO:0041832
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cancer susceptibility 8","termid":"PBO:0041832"}


id: PBO:0080405
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"VPS35 pseudogene 1","termid":"PBO:0080405"}


id: GO:0030777
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: (S)-scoulerine + S-adenosyl-L-methionine(1+) = (S)-tetrahydrocolumbamine + S-adenosyl-L-homocysteine + H+.","definition_xrefs":["RHEA:23808","EC:2.1.1.117"],"direct_ancestors":[{"relation_name":"is_a","term_name":"S-adenosylmethionine-dependent methyltransferase activity","termid":"GO:0008757"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016741"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016741","GO:0003824","GO:0003674","GO:0016740"],"is_obsolete":false,"name":"(S)-scoulerine 9-O-methyltransferase activity","secondary_identifiers":["MetaCyc:2.1.1.117-RXN","KEGG_REACTION:R03835"],"synonyms":[{"name":"S-adenosyl-L-methionine:(S)-scoclaurine 9-O-methyltransferase activity","type":"related"},{"name":"S-adenosyl-L-methionine:(S)-scoulerine 9-O-methyltransferase activity","type":"related"}],"termid":"GO:0030777"}


id: PBO:0111438
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"vacuolar proton/calcium exchanger Vcx1","termid":"PBO:0111438"}


id: PBO:0041840
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cancer susceptibility 20","termid":"PBO:0041840"}


id: PBO:0052824
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"keratin 90, pseudogene","termid":"PBO:0052824"}


id: PBO:0031295
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_plasma_membrane_sterol_distribution","termid":"PBO:0031295"}


id: GO:0034626
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Elongation of a fatty acid chain into which two or more C-C double bonds have been introduced.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"fatty acid elongation, unsaturated fatty acid","termid":"GO:0019368"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006629"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006629","GO:0044281","GO:0008150"],"is_obsolete":false,"name":"fatty acid elongation, polyunsaturated fatty acid","termid":"GO:0034626"}


id: PBO:0087677
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Subunit of the mitochondrial alpha-ketoglutarate dehydrogenase complex; catalyzes a key step in the tricarboxylic acid (TCA) cycle, the oxidative decarboxylation of alpha-ketoglutarate to form succinyl-CoA","termid":"PBO:0087677"}


id: PBO:0052967
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"LINE-1 type transposase domain containing 1 pseudogene 1","termid":"PBO:0052967"}


id: PR:G2TRP2
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- new15 gene.","definition_xrefs":["PRO:DNx","UniProtKB:G2TRP2"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial ribosomal protein new15, mitochondrial (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC8D2.23","synonyms":[{"name":"Spom972h-new15","type":"exact"}],"termid":"PR:G2TRP2"}


id: SO:0001160
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A sequence element characteristic of some RNA polymerase II promoters, usually located between -30 and +15 relative to the TSS. Consensus sequence is KNNCAKCNCTRNY. Tends to co-occur with DMv2 (SO:0001161). Tends to not occur with DPE motif (SO:0000015) or MTE (0001162).","definition_xrefs":["PMID:12537576:16827941"],"direct_ancestors":[{"relation_name":"is_a","term_name":"promoter_element","termid":"SO:0001659"},{"relation_name":"part_of","term_name":"RNApol_II_promoter","termid":"SO:0000170"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DMv3_motif","synonyms":[{"name":"DMv3","type":"exact"},{"name":"DMv3 motif","type":"exact"},{"name":"KNNCAKCNCTRNY","type":"narrow"},{"name":"directional motif v3","type":"exact"},{"name":"promoter motif 7","type":"exact"}],"termid":"SO:0001160"}


id: PBO:0062569
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 10 subfamily AH member 1 pseudogene","termid":"PBO:0062569"}


id: GO:0045258
data:
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id: PBO:0063647
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"phosphoglycerate mutase 1 pseudogene 4","termid":"PBO:0063647"}


id: CHEBI:15996
data:
  {"annotation_feature_type":"gene","cv_name":"chebi_ontology","definition":"A purine ribonucleoside 5'-triphosphate that has formula C10H16N5O14P3.","direct_ancestors":[{"relation_name":"is_a","term_name":"chemical entity","termid":"CHEBI:24431"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"GTP","termid":"CHEBI:15996"}


id: GO:0062052
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  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The sequence of events that initiates (or primes) the synthesis of semi-crystalline starch granules within photosynthetic chloroplasts or non-photosynthetic amyloplasts.","definition_xrefs":["PMID:28684429"],"direct_ancestors":[{"relation_name":"is_a","term_name":"starch biosynthetic process","termid":"GO:0019252"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005975"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0005975","GO:0008150"],"is_obsolete":false,"name":"starch granule initiation","termid":"GO:0062052"}


id: MOD:00031
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  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts a source amino acid residue to an L-selenocysteine, a natural pretranslational modification.","definition_xrefs":["PubMed:2963330","RESID:AA0022","PubMed:6217842","ChEBI:30000","PubMed:10523135","PubMed:2037562","PubMed:1066676","PubMed:4734725","PubMed:6714945","PubMed:6076213"],"direct_ancestors":[{"relation_name":"is_a","term_name":"selenium containing residue","termid":"MOD:00745"},{"relation_name":"is_a","term_name":"modified residue that can arise from different natural residues","termid":"MOD:00859"},{"relation_name":"is_a","term_name":"natural, non-standard encoded residue","termid":"MOD:00868"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"L-selenocysteine residue","synonyms":[{"name":"(2R)-2-amino-3-selanylpropanoic acid","type":"exact"},{"name":"2-azanyl-3-selanylpropanoic acid","type":"exact"},{"name":"3-selenylalanine","type":"exact"},{"name":"L-selenocysteine","type":"exact"},{"name":"NON_STD Selenocysteine","type":"exact"},{"name":"SeCys","type":"exact"},{"name":"Sec","type":"exact"},{"name":"selenium cysteine","type":"exact"}],"termid":"MOD:00031"}


id: FYPO:0003362
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id: GO:0008654
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id: GO:0030262
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id: PBO:0075165
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nuclear ribonucleoprotein D1 polypeptide","termid":"PBO:0075165"}


id: PBO:0058049
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 4270","termid":"PBO:0058049"}


id: GO:0034399
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id: GO:0035930
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id: PBO:0034547
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id: GO:0046083
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id: PBO:0040080
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id: GO:0002365
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id: PBO:0040210
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  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ASXL transcriptional regulator 3","termid":"PBO:0040210"}


id: PBO:0082987
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id: PBO:0072927
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id: GO:0003174
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id: SO:0001659
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"An element that can exist within the promoter region of a gene.","direct_ancestors":[{"relation_name":"is_a","term_name":"DNA_motif","termid":"SO:0000713"},{"relation_name":"overlaps","term_name":"TF_binding_site","termid":"SO:0000235"},{"relation_name":"part_of","term_name":"promoter","termid":"SO:0000167"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"promoter_element","synonyms":[{"name":"promoter element","type":"exact"}],"termid":"SO:0001659"}


id: PBO:0059240
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial ribosomal protein L11 pseudogene 3","termid":"PBO:0059240"}


id: PBO:0049621
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"H3 histone pseudogene 24","termid":"PBO:0049621"}


id: PBO:0046528
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"endoplasmic reticulum protein 27","termid":"PBO:0046528"}


id: PBO:0070435
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RPGRIP1 like","termid":"PBO:0070435"}


id: MOD:01703
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts a source amino acid residue to dehydrobutyrine.","definition_xrefs":["PubMed:18688235"],"direct_ancestors":[{"relation_name":"is_a","term_name":"modified residue that can arise from different natural residues","termid":"MOD:00859"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dehydrobutyrine","synonyms":[{"name":"Dehydrated","type":"related"},{"name":"Dehydration","type":"related"},{"name":"Dehydroamino butyric acid","type":"exact"},{"name":"beta-elim-t","type":"exact"},{"name":"dHAbu","type":"exact"},{"name":"dehydro","type":"exact"},{"name":"phospholosst","type":"exact"}],"termid":"MOD:01703"}


id: PBO:0080972
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger and BTB domain containing 8 opposite strand pseudogene 1","termid":"PBO:0080972"}


id: PBO:0087090
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Ribosomal 60S subunit protein L7A; required for processing of 27SA3 pre-rRNA to 27SB pre-rRNA during assembly of large ribosomal subunit; depletion leads to a turnover of pre-rRNA; contains a conserved C-terminal Nucleic acid Binding Domain (NDB2); binds to Domain II of 25S and 5.8S rRNAs; homologous to mammalian ribosomal protein L7 and bacterial L30; RPL7A has a paralog, RPL7B, that arose from the whole genome duplication","termid":"PBO:0087090"}


id: PBO:0041127
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"BTB domain containing 8","termid":"PBO:0041127"}


id: PBO:0004696
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"methylthioribose-1-phosphate isomerase (predicted)","termid":"PBO:0004696"}


id: GO:0048831
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of shoot development.","definition_xrefs":["GOC:tb","PMID:16361392"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of developmental process","termid":"GO:0050793"},{"relation_name":"regulates","term_name":"shoot system development","termid":"GO:0048367"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of shoot system development","synonyms":[{"name":"regulation of shoot development","type":"exact"}],"termid":"GO:0048831"}


id: GO:0031832
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a type 6 serotonin receptor.","definition_xrefs":["GOC:mah","GOC:nln"],"direct_ancestors":[{"relation_name":"is_a","term_name":"G protein-coupled serotonin receptor binding","termid":"GO:0031821"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005515"},{"rel_name":"is_a","termid":"GO:0005488"}],"interesting_parent_ids":["GO:0003674","GO:0005488","GO:0005515"],"is_obsolete":false,"name":"type 6 serotonin receptor binding","synonyms":[{"name":"5-hydroxytryptamine 6 receptor binding","type":"exact"},{"name":"type 6 serotonin receptor ligand","type":"narrow"}],"termid":"GO:0031832"}


id: GO:0042093
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which a relatively unspecialized thymocyte acquires specialized features of a T-helper cell.","definition_xrefs":["GOC:ebc"],"direct_ancestors":[{"relation_name":"is_a","term_name":"CD4-positive, alpha-beta T cell differentiation involved in immune response","termid":"GO:0002294"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"T-helper cell differentiation","synonyms":[{"name":"T-helper cell development","type":"related"},{"name":"helper T cell differentiation","type":"exact"}],"termid":"GO:0042093"}


id: PBO:0024828
data:
  {"annotation_feature_type":"gene","cv_name":"complementation","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"functionally complemented by Brassica napus BnMAP4Kalpha2","termid":"PBO:0024828"}


id: PBO:0060155
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MT-RNR2 like 3 (pseudogene)","termid":"PBO:0060155"}


id: GO:0006846
data:
  {"annotated_genes":["SJAG_01505"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[94025],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006847"}]},"cv_name":"biological_process","definition":"The directed movement of acetate into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.","definition_xrefs":["GOC:krc"],"direct_ancestors":[{"relation_name":"is_a","term_name":"monocarboxylic acid transport","termid":"GO:0015718"}],"gene_count":1,"genes_by_uniquename":{"SJAG_01505":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0051179"}],"interesting_parent_ids":["GO:0006810","GO:0008150","GO:0051179"],"is_obsolete":false,"name":"acetate transport","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0006846","terms_by_termid":{"GO:0006847":null}}


id: GO:1902654
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving aromatic primary alcohol.","definition_xrefs":["GOC:mengo_curators","PMID:19219878","GO_REF:0000068","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular aromatic compound metabolic process","termid":"GO:0006725"},{"relation_name":"is_a","term_name":"primary alcohol metabolic process","termid":"GO:0034308"},{"relation_name":"is_a","term_name":"organic cyclic compound metabolic process","termid":"GO:1901360"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0008150","GO:0044281"],"is_obsolete":false,"name":"aromatic primary alcohol metabolic process","synonyms":[{"name":"aromatic primary alcohol metabolism","type":"exact"}],"termid":"GO:1902654"}


id: PBO:0091051
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"plasma membrane calcium ion import channel Cch1","termid":"PBO:0091051"}


id: GO:0031760
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to an Edg-7 lysophosphatidic acid receptor.","definition_xrefs":["GOC:mah","GOC:nln"],"direct_ancestors":[{"relation_name":"is_a","term_name":"endothelial differentiation G protein-coupled receptor binding","termid":"GO:0031753"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0005515"}],"interesting_parent_ids":["GO:0005488","GO:0003674","GO:0005515"],"is_obsolete":false,"name":"Edg-7 lysophosphatidic acid receptor binding","synonyms":[{"name":"Edg-7 lysophosphatidic acid receptor ligand","type":"narrow"},{"name":"LPA3 receptor binding","type":"exact"}],"termid":"GO:0031760"}


id: GO:0062022
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The ATP-dependent protein localization to chromatin by which a cohesin ring complex is topologically linked to ssDNA (lagging strand) which is already linked to a dsDNA (leading strand) molecule as part of the mitotic cell cycle.","definition_xrefs":["GOC:vw","PMID:29358048"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mitotic cohesin loading","termid":"GO:0061780"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0007049"}],"interesting_parent_ids":["GO:0051179","GO:0008150","GO:0007049"],"is_obsolete":false,"name":"mitotic cohesin ssDNA (lagging strand) loading","synonyms":[{"name":"second-DNA capture","type":"exact"}],"termid":"GO:0062022"}


id: PBO:0073948
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"solute carrier family 20 member 1 pseudogene 1","termid":"PBO:0073948"}


id: PBO:0091419
data:
  {"annotation_feature_type":"gene","cv_name":"complementation","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"functionally complemented by human ELOVL7","termid":"PBO:0091419"}


id: PBO:0002424
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"iron permease Fip1","termid":"PBO:0002424"}


id: PBO:0049392
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"GTP binding protein 6 (putative)","termid":"PBO:0049392"}


id: PBO:0029123
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-inviable_swollen_elongated_cell_with_enlarged_nucleus_upon_entry_into_stationary_phase","termid":"PBO:0029123"}


id: GO:0003185
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which the structure of the sinoatrial valve is generated and organized.","definition_xrefs":["GOC:mtg_heart"],"direct_ancestors":[{"relation_name":"is_a","term_name":"heart valve morphogenesis","termid":"GO:0003179"},{"relation_name":"part_of","term_name":"sinoatrial valve development","termid":"GO:0003172"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"sinoatrial valve morphogenesis","synonyms":[{"name":"SA valve morphogenesis","type":"exact"}],"termid":"GO:0003185"}


id: PR:P79005
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- taz1 gene.","definition_xrefs":["PRO:DNx","UniProtKB:P79005"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"telomere length regulator taz1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC16A10.07c","synonyms":[{"name":"Spom972h-taz1","type":"exact"}],"termid":"PR:P79005"}


id: PBO:0079418
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tubulin beta pseudogene 1","termid":"PBO:0079418"}


id: GO:0045963
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways involving dopamine.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of dopamine metabolic process","termid":"GO:0042053"},{"relation_name":"is_a","term_name":"negative regulation of catecholamine metabolic process","termid":"GO:0045914"},{"relation_name":"negatively_regulates","term_name":"dopamine metabolic process","termid":"GO:0042417"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of dopamine metabolic process","synonyms":[{"name":"down regulation of dopamine metabolic process","type":"exact"},{"name":"down-regulation of dopamine metabolic process","type":"exact"},{"name":"downregulation of dopamine metabolic process","type":"exact"},{"name":"inhibition of dopamine metabolic process","type":"narrow"},{"name":"negative regulation of dopamine metabolism","type":"exact"}],"termid":"GO:0045963"}


id: GO:0090550
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a starvation stimulus, deprivation of molybdenum.","definition_xrefs":["GOC:tair_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to starvation","termid":"GO:0042594"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"response to molybdenum starvation","termid":"GO:0090550"}


id: PBO:0067273
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 351, pseudogene","termid":"PBO:0067273"}


id: PBO:0049965
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"HIG1 hypoxia inducible domain family member 1A pseudogene 11","termid":"PBO:0049965"}


id: PR:Q9P6J5
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPBC1683.05 gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q9P6J5"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized permease C1683.05 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC1683.05","synonyms":[{"name":"Spom972h-SPBC1683.05","type":"exact"}],"termid":"PR:Q9P6J5"}


id: PBO:0063152
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pro-apoptotic WT1 regulator","termid":"PBO:0063152"}


id: GO:0006501
data:
  {"annotated_genes":["SJAG_06309","SJAG_00059"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[105790,85589],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0061739"}]},"cv_name":"biological_process","definition":"The covalent attachment of a lipid group to the carboxy-terminus of a protein.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein lipidation","termid":"GO:0006497"},{"relation_name":"is_a","term_name":"C-terminal protein amino acid modification","termid":"GO:0018410"}],"gene_count":2,"genes_by_uniquename":{"SJAG_00059":null,"SJAG_06309":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0042158"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0042158"],"is_obsolete":false,"name":"C-terminal protein lipidation","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0006501","terms_by_termid":{"GO:0061739":null}}


id: FYPO:0001842
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which the observed rate of adenylyl cyclase activity is increased.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased catalytic activity","termid":"FYPO:0000662"},{"relation_name":"is_a","term_name":"abnormal adenylyl cyclase activity","termid":"FYPO:0001841"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000654"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000707"},{"rel_name":"is_a","termid":"FYPO:0000661"},{"rel_name":"is_a","termid":"FYPO:0000652"}],"interesting_parent_ids":["FYPO:0000707","FYPO:0000652","FYPO:0000654","FYPO:0000661","FYPO:0001985"],"is_obsolete":false,"name":"increased adenylyl cyclase activity","synonyms":[{"name":"increased adenylate cyclase activity","type":"exact"}],"termid":"FYPO:0001842"}


id: PBO:0063003
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"platelet activating factor acetylhydrolase 1b regulatory subunit 1","termid":"PBO:0063003"}


id: PR:O13752
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A transmembrane protein 56 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO01482","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized TLC domain-containing protein C17A2.02c (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC17A2.02c","secondary_identifiers":["UniProtKB:O13752"],"synonyms":[{"name":"Spom972h-TMEM56","type":"exact"}],"termid":"PR:O13752"}


id: GO:0048393
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which the developmental fate of a cell becomes restricted such that it will develop into an intermediate mesoderm cell.","definition_xrefs":["GOC:dgh"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mesodermal cell fate commitment","termid":"GO:0001710"},{"relation_name":"part_of","term_name":"intermediate mesodermal cell differentiation","termid":"GO:0048392"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"intermediate mesodermal cell fate commitment","synonyms":[{"name":"intermediate mesoderm cell fate commitment","type":"exact"}],"termid":"GO:0048393"}


id: PBO:0005159
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"wtf element Wtf9","termid":"PBO:0005159"}


id: PR:O43061
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- mug136 gene.","definition_xrefs":["UniProtKB:O43061","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"meiotically up-regulated gene 136 protein (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC4C3.08","synonyms":[{"name":"Spom972h-mug136","type":"exact"}],"termid":"PR:O43061"}


id: PBO:0081410
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein 260","termid":"PBO:0081410"}


id: PBO:0001753
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"T5orf172 family protein","termid":"PBO:0001753"}


id: PR:Q10499
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"An apoptosis-inducing factor 3 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO02144","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"apoptosis-inducing factor 1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC26F1.14c","secondary_identifiers":["UniProtKB:Q10499"],"synonyms":[{"name":"Spom972h-AIFM3","type":"exact"}],"termid":"PR:Q10499"}


id: PBO:0088155
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Vesicle membrane protein (v-SNARE) with acyltransferase activity; involved in trafficking to and within the Golgi, endocytic trafficking to the vacuole, and vacuolar fusion; membrane localization due to prenylation at the carboxy-terminus; human homolog YKT6 can complement yeast ykt6 mutant","termid":"PBO:0088155"}


id: GO:1904331
data:
  {"annotated_genes":["SJAG_00573"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[106865],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1904332"}]},"cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of error-prone translesion synthesis.","definition_xrefs":["PMID:22761594","GOC:TermGenie","GO_REF:0000058","GOC:kmv"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of DNA repair","termid":"GO:0006282"},{"relation_name":"is_a","term_name":"regulation of DNA biosynthetic process","termid":"GO:2000278"},{"relation_name":"regulates","term_name":"error-prone translesion synthesis","termid":"GO:0042276"}],"gene_count":1,"genes_by_uniquename":{"SJAG_00573":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0006281"},{"rel_name":"regulates","termid":"GO:0006259"}],"interesting_parent_ids":["GO:0006281","GO:0008150","GO:0006259"],"is_obsolete":false,"name":"regulation of error-prone translesion synthesis","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"regulation of error-prone postreplication DNA repair","type":"related"},{"name":"regulation of mutagenic PRR","type":"exact"},{"name":"regulation of mutagenic postreplication DNA repair","type":"related"}],"termid":"GO:1904331","terms_by_termid":{"GO:1904332":null}}


id: GO:0031755
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to an Edg-2 lysophosphatidic acid receptor.","definition_xrefs":["GOC:mah","GOC:nln"],"direct_ancestors":[{"relation_name":"is_a","term_name":"endothelial differentiation G protein-coupled receptor binding","termid":"GO:0031753"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0005515"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0005488","GO:0005515"],"is_obsolete":false,"name":"Edg-2 lysophosphatidic acid receptor binding","synonyms":[{"name":"Edg-2 lysophosphatidic acid receptor ligand","type":"narrow"},{"name":"LPA1 receptor binding","type":"exact"}],"termid":"GO:0031755"}


id: GO:1903947
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of ventricular cardiac muscle cell action potential.","definition_xrefs":["PMID:25281747","GO_REF:0000058","GOC:mtg_cardiac_conduct_nov11","GOC:nc","GOC:TermGenie","GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of action potential","termid":"GO:0045760"},{"relation_name":"is_a","term_name":"regulation of ventricular cardiac muscle cell action potential","termid":"GO:0098911"},{"relation_name":"is_a","term_name":"positive regulation of cardiac muscle cell contraction","termid":"GO:0106134"},{"relation_name":"positively_regulates","term_name":"ventricular cardiac muscle cell action potential","termid":"GO:0086005"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of ventricular cardiac muscle cell action potential","synonyms":[{"name":"activation of ventricular cardiac muscle cell action potential","type":"narrow"},{"name":"up regulation of ventricular cardiac muscle cell action potential","type":"exact"},{"name":"up-regulation of ventricular cardiac muscle cell action potential","type":"exact"},{"name":"upregulation of ventricular cardiac muscle cell action potential","type":"exact"}],"termid":"GO:1903947"}


id: PBO:0090079
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial pyruvate dehydrogenase (lipoamide) phosphatase","termid":"PBO:0090079"}


id: GO:0006189
data:
  {"annotated_genes":["SJAG_03355","SJAG_01661","SJAG_04681","SJAG_02364","SJAG_01814","SJAG_02850","SJAG_03140","SJAG_01081"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[69966,71221,75815,93147,94865,98669,105380,109572],"is_not":false,"summary":null,"term":"GO:0006189"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of IMP, inosine monophosphate, by the stepwise assembly of a purine ring on ribose 5-phosphate.","definition_xrefs":["GOC:mah","ISBN:0716720094"],"direct_ancestors":[{"relation_name":"is_a","term_name":"IMP biosynthetic process","termid":"GO:0006188"}],"gene_count":8,"genes_by_uniquename":{"SJAG_01081":null,"SJAG_01661":null,"SJAG_01814":null,"SJAG_02364":null,"SJAG_02850":null,"SJAG_03140":null,"SJAG_03355":null,"SJAG_04681":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0055086"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0044281","GO:0055086","GO:0008150"],"is_obsolete":false,"name":"'de novo' IMP biosynthetic process","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"synonyms":[{"name":"'de novo' IMP anabolism","type":"exact"},{"name":"'de novo' IMP biosynthesis","type":"exact"},{"name":"'de novo' IMP formation","type":"exact"},{"name":"'de novo' IMP synthesis","type":"exact"},{"name":"'de novo' purine biosynthesis","type":"broad"},{"name":"'de novo' purine biosynthetic process","type":"broad"}],"termid":"GO:0006189","terms_by_termid":{"GO:0006189":null}}


id: PBO:0082331
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ATPase required for ubiquinone biosynthesis and respiratory growth; maintains levels of CoQ biosynthetic proteins; binds to CoQ biosynthesis intermediates; UbiB protein kinase-like family member that lacks canonical protein kinase activity; similar to prokaryotic proteins involved in ubiquinone biosynthesis; human homolog ADCK3 complements a coq8 null, is associated with CoQ and respiratory-chain deficiencies, and is mutated in autosomal-recessive cerebellar ataxia type 2","termid":"PBO:0082331"}


id: PBO:0047425
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Fc alpha receptor","termid":"PBO:0047425"}


id: PBO:0074739
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nucleolar RNA, H/ACA box 99","termid":"PBO:0074739"}


id: PBO:0084990
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NADPH-dependent aldo-keto reductase; reduces multiple substrates including 2-methylbutyraldehyde and D,L-glyceraldehyde, expression is induced by osmotic and oxidative stress; functionally redundant with other aldo-keto reductases; protein abundance increases in response to DNA replication stress; YPR1 has a paralog, GCY1, that arose from the whole genome duplication; human homolog AKR1B1 can complement yeast null mutant","termid":"PBO:0084990"}


id: GO:0030161
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Stops, prevents or reduces the activity of the enzyme calpain, which catalyzes of the preferential cleavage of Tyr-Xaa, Met-Xaa or Arg-Xaa with Leu or Val as the P2 residue.","definition_xrefs":["GOC:ai"],"gene_count":0,"genotype_count":0,"name":"obsolete calpain inhibitor activity (obsolete GO:0030161)","synonyms":[{"name":"calpain inhibitor activity","type":"exact"}],"termid":"GO:0030161"}


id: PBO:0040067
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cAMP regulated phosphoprotein 21","termid":"PBO:0040067"}


id: GO:0140714
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A protein complex that assists early maturation of nascent 60S ribosomal subunits. The complex interacts with the large ribosomal subunit rRNA via one of the components (Urb2 in S. cerevisiae) and requires a RNA helicase (Dbp6 in S. cerevisiae).","definition_xrefs":["GOC:lnp","PMID:9528757","PMID:17145778"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein folding chaperone complex","termid":"GO:0101031"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0005575","GO:0032991"],"is_obsolete":false,"name":"large ribosomal subunit pre-assembly complex","termid":"GO:0140714"}


id: PBO:0017405
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene characterisation status","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Schizosaccharomyces pombe specific protein, uncharacterized","termid":"PBO:0017405"}


id: GO:2000454
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of CD8-positive, alpha-beta cytotoxic T cell extravasation.","definition_xrefs":["GOC:obol"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of CD8-positive, alpha-beta T cell extravasation","termid":"GO:2000451"},{"relation_name":"is_a","term_name":"regulation of CD8-positive, alpha-beta cytotoxic T cell extravasation","termid":"GO:2000452"},{"relation_name":"positively_regulates","term_name":"CD8-positive, alpha-beta cytotoxic T cell extravasation","termid":"GO:0035698"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of CD8-positive, alpha-beta cytotoxic T cell extravasation","termid":"GO:2000454"}


id: GO:0140925
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The directed movement of L-phenylalanine from outside of a cell, across the plasma membrane and into the cytosol.","definition_xrefs":["PMID:11069779"],"direct_ancestors":[{"relation_name":"is_a","term_name":"aromatic amino acid transport","termid":"GO:0015801"},{"relation_name":"is_a","term_name":"phenylalanine transport","termid":"GO:0015823"},{"relation_name":"is_a","term_name":"amino acid import across plasma membrane","termid":"GO:0089718"},{"relation_name":"is_a","term_name":"L-alpha-amino acid transmembrane transport","termid":"GO:1902475"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0055085"},{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0055085","GO:0008150","GO:0006810","GO:0051179"],"is_obsolete":false,"name":"L-phenylalanine import across plasma membrane","termid":"GO:0140925"}


id: GO:0047781
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: H2O + citrulline = NH3 + CO2 + L-ornithine.","definition_xrefs":["MetaCyc:CITRULLINASE-RXN","EC:3.5.1.20"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides","termid":"GO:0016811"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0016810"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016787","GO:0003824","GO:0016810","GO:0003674"],"is_obsolete":false,"name":"citrullinase activity","secondary_identifiers":["RHEA:11940"],"synonyms":[{"name":"L-citrulline 5-N-carbamoyldihydrolase activity","type":"related"},{"name":"L-citrulline N5-carbamoyldihydrolase activity","type":"related"},{"name":"citrulline hydrolase activity","type":"related"},{"name":"citrulline ureidase activity","type":"related"}],"termid":"GO:0047781"}


id: GO:0046156
data:
  {"annotated_genes":["SJAG_01786","SJAG_01192"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[75766,71176],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0019354"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways involving siroheme, a tetrahydroporphyrin with adjacent, reduced pyrrole rings.","definition_xrefs":["ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"heme metabolic process","termid":"GO:0042168"}],"gene_count":2,"genes_by_uniquename":{"SJAG_01192":null,"SJAG_01786":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0033013"}],"interesting_parent_ids":["GO:0033013","GO:0008150"],"is_obsolete":false,"name":"siroheme metabolic process","references_by_uniquename":{"GO_REF:0000033":null},"synonyms":[{"name":"sirohaem metabolic process","type":"exact"},{"name":"sirohaem metabolism","type":"exact"},{"name":"siroheme metabolism","type":"exact"}],"termid":"GO:0046156","terms_by_termid":{"GO:0019354":null}}


id: PBO:0091663
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transcription regulator Zas1","termid":"PBO:0091663"}


id: PBO:0110358
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DENR pseudogene 2","termid":"PBO:0110358"}


id: GO:0060684
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in the transfer of information from an epithelial cell to a mesenchymal cell where it is interpreted.","definition_xrefs":["GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell-cell signaling","termid":"GO:0007267"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"epithelial-mesenchymal cell signaling","synonyms":[{"name":"epithelial-mesenchymal cell signalling","type":"exact"}],"termid":"GO:0060684"}


id: GO:0019113
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of a monooxygenase reaction in which oxygen is incorporated into limonene.","definition_xrefs":["GOC:mah","PMID:820855"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen","termid":"GO:0016709"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016491","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"limonene monooxygenase activity","secondary_identifiers":["EC:1.14.13.-"],"termid":"GO:0019113"}


id: GO:0032708
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate, or extent of interleukin-24 production.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of cytokine production","termid":"GO:0001818"},{"relation_name":"is_a","term_name":"regulation of interleukin-24 production","termid":"GO:0032668"},{"relation_name":"negatively_regulates","term_name":"interleukin-24 production","termid":"GO:0032628"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"negatively_regulates","termid":"GO:0010467"},{"rel_name":"regulates","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0008150","GO:0010467"],"is_obsolete":false,"name":"negative regulation of interleukin-24 production","secondary_identifiers":["GO:0045532"],"synonyms":[{"name":"down regulation of interleukin-24 production","type":"exact"},{"name":"down-regulation of interleukin-24 production","type":"exact"},{"name":"downregulation of interleukin-24 production","type":"exact"},{"name":"inhibition of interleukin-24 production","type":"narrow"},{"name":"negative regulation of IL-24 production","type":"exact"},{"name":"negative regulation of interleukin-24 biosynthetic process","type":"narrow"}],"termid":"GO:0032708"}


id: PBO:0046986
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"family with sequence similarity 86 member K, pseudogene","termid":"PBO:0046986"}


id: PBO:0087709
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Subunit of the RNA polymerase II mediator complex; associates with core polymerase subunits to form the RNA polymerase II holoenzyme; essential for transcriptional regulation; involved in glucose repression","termid":"PBO:0087709"}


id: PBO:0065316
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"serine protease 40A (pseudogene)","termid":"PBO:0065316"}


id: PBO:0001904
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TRAPP complex subunit Bet5 (predicted)","termid":"PBO:0001904"}


id: GO:0051699
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: L-proline + O2 + H2O = L-delta1-pyrroline-5-carboxylate + H2O2.","definition_xrefs":["GOC:curators"],"gene_count":0,"genotype_count":0,"name":"obsolete proline oxidase activity (obsolete GO:0051699)","termid":"GO:0051699"}


id: PBO:0029850
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_protein_localization_to_telomeric_heterochromatin_during_vegetative_growth","termid":"PBO:0029850"}


id: GO:0031260
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The portion of the plasma membrane surrounding a pseudopodium.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell projection membrane","termid":"GO:0031253"},{"relation_name":"part_of","term_name":"pseudopodium","termid":"GO:0031143"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005886"}],"interesting_parent_ids":["GO:0005575","GO:0005886"],"is_obsolete":false,"name":"pseudopodium membrane","termid":"GO:0031260"}


id: GO:0002165
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of the instar larva or pupa over time, from its formation to the mature structure. An example of this process is found in Drosophila melanogaster.","definition_xrefs":["GOC:jid","GOC:mtg_sensu"],"direct_ancestors":[{"relation_name":"is_a","term_name":"multicellular organism development","termid":"GO:0007275"},{"relation_name":"is_a","term_name":"post-embryonic development","termid":"GO:0009791"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"instar larval or pupal development","termid":"GO:0002165"}


id: SO:0000117
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","gene_count":0,"genotype_count":0,"name":"OBSOLETE SO:0000117 transcript_with_readthrough_stop_codon (obsolete SO:0000117)","termid":"SO:0000117"}


id: PBO:0086566
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Putative protein of unknown function; conserved among S. cerevisiae strains; YOL085C is not an essential gene; partially overlaps dubious ORF YOL085W-A","termid":"PBO:0086566"}


id: PBO:0040410
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ATPase H+ transporting V1 subunit H","termid":"PBO:0040410"}


id: PBO:0012597
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"HP1 family chromodomain protein 2","termid":"PBO:0012597"}


id: GO:0015805
data:
  {"annotated_genes":["SJAG_01890","SJAG_01589"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[83828,97860],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1990543"}]},"cv_name":"biological_process","definition":"The directed movement of S-adenosylmethionine, S-(5'-adenosyl)-L-methionine, an important intermediate in one-carbon metabolism, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"organic cation transport","termid":"GO:0015695"},{"relation_name":"is_a","term_name":"sulfur compound transport","termid":"GO:0072348"}],"gene_count":2,"genes_by_uniquename":{"SJAG_01589":null,"SJAG_01890":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0006810","GO:0008150","GO:0051179"],"is_obsolete":false,"name":"S-adenosyl-L-methionine transport","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"S-adenosyl methionine transport","type":"exact"},{"name":"S-adenosylmethionine transport","type":"exact"},{"name":"SAM transport","type":"exact"}],"termid":"GO:0015805","terms_by_termid":{"GO:1990543":null}}


id: GO:0120259
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A ribonucleoprotein complex that contains the 7SK snRNA. The 7SK snRNP plays a central role in RNA polymerase II elongation control by regulating the availability of active P-TEFb.","definition_xrefs":["PMID:18249148","PMID:28431135"],"direct_ancestors":[{"relation_name":"is_a","term_name":"small nuclear ribonucleoprotein complex","termid":"GO:0030532"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005634"}],"interesting_parent_ids":["GO:0005634","GO:0032991","GO:0005575"],"is_obsolete":false,"name":"7SK snRNP","synonyms":[{"name":"snRNP 7SK","type":"exact"}],"termid":"GO:0120259"}


id: GO:0016266
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The stepwise addition of carbohydrate or carbohydrate derivative residues to the initially added O-linked residue (usually GalNAc) to form a core O-glycan structure.","definition_xrefs":["GOC:pr","GOC:mah","PMID:10580130"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein O-linked glycosylation","termid":"GO:0006493"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006486"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006486","GO:0008150"],"is_obsolete":false,"name":"O-glycan processing","termid":"GO:0016266"}


id: GO:1903968
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a micafungin stimulus.","definition_xrefs":["GO_REF:0000071","GOC:TermGenie","PMID:16928959"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular response to lipid","termid":"GO:0071396"},{"relation_name":"is_a","term_name":"cellular response to peptide","termid":"GO:1901653"},{"relation_name":"is_a","term_name":"response to micafungin","termid":"GO:1903967"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cellular response to micafungin","termid":"GO:1903968"}


id: PBO:0053765
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1010","termid":"PBO:0053765"}


id: FYPO:0007820
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of polyphosphate measured in a cell is too low to detect.","definition_xrefs":["PMID:34147496","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"substance absent from cell during vegetative growth","termid":"FYPO:0001208"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001320","FYPO:0001985"],"is_obsolete":false,"name":"polyphosphate absent from cell","synonyms":[{"name":"polyphosphate absent from cell during mitotic cell cycle","type":"related"},{"name":"polyphosphate absent from cell during vegetative growth","type":"exact"}],"termid":"FYPO:0007820"}


id: PBO:0053537
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 539","termid":"PBO:0053537"}


id: PR:Q10318
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A dihydroxy-acid dehydratase that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx","OMA:SCHPO00977"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dihydroxy-acid dehydratase, mitochondrial (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC17G8.06c","secondary_identifiers":["UniProtKB:Q10318"],"synonyms":[{"name":"2,3-dihydroxy acid hydrolyase (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"DAD (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-ilvD","type":"exact"}],"termid":"PR:Q10318"}


id: MOD:00918
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that modifies an L-tryptophan residue.","definition_xrefs":["PubMed:18688235"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein modification categorized by amino acid modified","termid":"MOD:01157"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"modified L-tryptophan residue","synonyms":[{"name":"ModTrp","type":"exact"}],"termid":"MOD:00918"}


id: PATO:0000802
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0000802 sensory function value (obsolete PATO:0000802)","termid":"PATO:0000802"}


id: PR:O13846
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A fatty acid 2-hydroxylase that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO01681","PRO:DNx","PANTHER:PTHR12863:SF0"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ceramide very long chain fatty acid hydroxylase-like protein C19G12.08 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC19G12.08","secondary_identifiers":["UniProtKB:O13846"],"synonyms":[{"name":"Spom972h-FA2H","type":"exact"}],"termid":"PR:O13846"}


id: GO:0016311
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process of removing one or more phosphoric (ester or anhydride) residues from a molecule.","definition_xrefs":["ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phosphate-containing compound metabolic process","termid":"GO:0006796"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"dephosphorylation","secondary_identifiers":["Wikipedia:Dephosphorylation"],"termid":"GO:0016311"}


id: GO:0044510
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process that begins with venom being forced into an organism by the bite or sting of another organism, and ends with the resultant positive regulation of signal transduction in the bitten organism.","definition_xrefs":["GOC:jl","PMID:8405712","GOC:fj"],"direct_ancestors":[{"relation_name":"is_a","term_name":"envenomation resulting in modulation of signal transduction in another organism","termid":"GO:0044509"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"envenomation resulting in positive regulation of signal transduction in another organism","synonyms":[{"name":"envenomation resulting in positive regulation of signal transduction in other organism","type":"exact"}],"termid":"GO:0044510"}


id: GO:0043736
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the hydrolysis of alkylated DNA; recognizes and removes both N-3- and N-7-methyl purines by cleaving the N-C1' glycosidic bond between the target damaged DNA base and the deoxyribose sugar. The reaction releases a free base and leaves an apurinic (AP) site.","definition_xrefs":["PMID:10375529"],"gene_count":0,"genotype_count":0,"name":"obsolete DNA-3-methyladenine glycosylase IV activity (obsolete GO:0043736)","synonyms":[{"name":"DNA-3-methyladenine glycosylase IV activity","type":"exact"},{"name":"Mpg II","type":"narrow"},{"name":"MpgII","type":"narrow"}],"termid":"GO:0043736"}


id: PATO:0000727
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0000727 behavioral function value (obsolete PATO:0000727)","termid":"PATO:0000727"}


id: PBO:0090390
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"S-methyl-5-thioadenosine phosphorylase Mta1","termid":"PBO:0090390"}


id: PBO:0090678
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"serine/threonine protein kinase S6K family Sck2","termid":"PBO:0090678"}


id: GO:0002035
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which an angiotensin-mediated signaling system present in the brain regulates the force with which blood passes through the circulatory system.","definition_xrefs":["PMID:2909574"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nervous system process involved in regulation of systemic arterial blood pressure","termid":"GO:0001976"},{"relation_name":"is_a","term_name":"regulation of blood volume by renin-angiotensin","termid":"GO:0002016"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"brain renin-angiotensin system","termid":"GO:0002035"}


id: PBO:0041977
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"coiled-coil domain containing 18","termid":"PBO:0041977"}


id: SO:0002037
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A tRNA primary transcript that also encodes pre-miR sequence that is processed to form functionally active miRNA.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"has_part","term_name":"pre_miRNA","termid":"SO:0001244"},{"relation_name":"is_a","term_name":"tRNA_primary_transcript","termid":"SO:0000210"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"miR_encoding_tRNA_primary_transcript","synonyms":[{"name":"miR encoding tRNA primary transcript","type":"exact"}],"termid":"SO:0002037"}


id: PBO:0039995
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ARL8B pseudogene 1","termid":"PBO:0039995"}


id: PBO:0086563
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Putative protein of unknown function; conserved among S. cerevisiae strains; YMR122C is not an essential gene","termid":"PBO:0086563"}


id: GO:0098525
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A neuromuscular junction that functions in the excitation of somatic muscle myotubes, such as an arthropod somatic muscle cells.","definition_xrefs":["GOC:dos"],"direct_ancestors":[{"relation_name":"is_a","term_name":"excitatory neuromuscular junction","termid":"GO:0098520"},{"relation_name":"is_a","term_name":"neuromuscular junction of somatic muscle myotube","termid":"GO:0098524"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"excitatory neuromuscular junction of somatic myotube","termid":"GO:0098525"}


id: GO:0032732
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate, or extent of interleukin-1 production.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of cytokine production","termid":"GO:0001819"},{"relation_name":"is_a","term_name":"regulation of interleukin-1 production","termid":"GO:0032652"},{"relation_name":"positively_regulates","term_name":"interleukin-1 production","termid":"GO:0032612"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"positively_regulates","termid":"GO:0010467"},{"rel_name":"regulates","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0008150","GO:0010467"],"is_obsolete":false,"name":"positive regulation of interleukin-1 production","secondary_identifiers":["GO:0050716","GO:0045362"],"synonyms":[{"name":"activation of interleukin-1 production","type":"narrow"},{"name":"positive regulation of IL-1 production","type":"exact"},{"name":"positive regulation of interleukin-1 biosynthetic process","type":"narrow"},{"name":"positive regulation of interleukin-1 secretion","type":"narrow"},{"name":"stimulation of interleukin-1 production","type":"narrow"},{"name":"up regulation of interleukin-1 production","type":"exact"},{"name":"up-regulation of interleukin-1 production","type":"exact"},{"name":"upregulation of interleukin-1 production","type":"exact"}],"termid":"GO:0032732"}


id: PBO:0054826
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2239","termid":"PBO:0054826"}


id: PBO:0038975
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ADP dependent glucokinase","termid":"PBO:0038975"}


id: GO:1990465
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction a long-chain aldehyde + O2 + 2 NADPH = an alkane + formate + H2O + 2 NADP+.","definition_xrefs":["PMID:22947199","RHEA:21440","GOC:mengo_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"carbon-carbon lyase activity","termid":"GO:0016830"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016829"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0016829","GO:0003824"],"is_obsolete":false,"name":"aldehyde oxygenase (deformylating) activity","secondary_identifiers":["EC:4.1.99.5"],"termid":"GO:1990465"}


id: GO:0050653
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The elongation of chondroitin sulfate proteoglycan chains by alternate addition of N-acetylhexosamine and GlcUA residues to the GAG-protein linkage region tetrasaccharide of chondroitin sulfate.","definition_xrefs":["GOC:ai","PMID:11788602"],"direct_ancestors":[{"relation_name":"is_a","term_name":"polysaccharide biosynthetic process","termid":"GO:0000271"},{"relation_name":"part_of","term_name":"chondroitin sulfate proteoglycan biosynthetic process","termid":"GO:0050650"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0005975"}],"interesting_parent_ids":["GO:0008150","GO:0005975"],"is_obsolete":false,"name":"chondroitin sulfate proteoglycan biosynthetic process, polysaccharide chain biosynthetic process","synonyms":[{"name":"chondroitin sulfate proteoglycan anabolism, polysaccharide chain anabolism","type":"exact"},{"name":"chondroitin sulfate proteoglycan chain elongation","type":"exact"},{"name":"chondroitin sulfate proteoglycan formation, polysaccharide chain biosynthesis","type":"exact"},{"name":"chondroitin sulfate proteoglycan formation, polysaccharide chain formation","type":"exact"},{"name":"chondroitin sulfate proteoglycan synthesis, polysaccharide chain synthesis","type":"exact"},{"name":"chondroitin sulphate proteoglycan biosynthesis, polysaccharide chain biosynthesis","type":"exact"},{"name":"chondroitin sulphate proteoglycan biosynthesis, polysaccharide chain biosynthetic process","type":"exact"}],"termid":"GO:0050653"}


id: PBO:0087289
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Silenced copy of a2 at HMR; similarity to Alpha2p; required along with a1p for inhibiting expression of the HO endonuclease in a/alpha HO/HO diploid cells with an active mating-type interconversion system","termid":"PBO:0087289"}


id: GO:1905256
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of RNA binding transcription factor activity.","definition_xrefs":["GOC:bf","GO_REF:0000059","GOC:TermGenie","GOC:PARL"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of molecular function","termid":"GO:0044092"},{"relation_name":"is_a","term_name":"regulation of RNA binding transcription factor activity","termid":"GO:1905255"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of RNA binding transcription factor activity","synonyms":[{"name":"down regulation of RNA binding transcription factor activity","type":"exact"},{"name":"down-regulation of RNA binding transcription factor activity","type":"exact"},{"name":"downregulation of RNA binding transcription factor activity","type":"exact"},{"name":"inhibition of RNA binding transcription factor activity","type":"narrow"}],"termid":"GO:1905256"}


id: PBO:0091135
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Schizosaccharomyces japonicus specific protein with 2 predicted transmembrane domains","termid":"PBO:0091135"}


id: PBO:0053336
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 189","termid":"PBO:0053336"}


id: GO:0052331
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The cytolytic destruction of red blood cells, with the release of intracellular hemoglobin, in one organism by another, where two organisms are in a symbiotic interaction.","definition_xrefs":["GOC:add","UniProtKB-KW:KW-0354"],"gene_count":0,"genotype_count":0,"name":"obsolete hemolysis in other organism involved in symbiotic interaction (obsolete GO:0052331)","synonyms":[{"name":"haemolysis in other organism involved in symbiotic interaction","type":"exact"},{"name":"hemolysin activity","type":"related"},{"name":"hemolysis by organism of RBCs in other organism during symbiotic interaction","type":"related"},{"name":"hemolysis by organism of erythrocytes in other organism during symbiotic interaction","type":"related"},{"name":"hemolysis by organism of red blood cells in other organism during symbiotic interaction","type":"related"},{"name":"hemolysis of cells in other organism during symbiotic interaction","type":"related"},{"name":"hemolysis of cells in other organism involved in symbiotic interaction","type":"exact"}],"termid":"GO:0052331"}


id: PBO:0054114
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1479","termid":"PBO:0054114"}


id: PBO:0066109
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RAS guanyl releasing protein 1","termid":"PBO:0066109"}


id: FYPO:0009055
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"An increased chemical resistance phenotype observed in the vegetative growth phase of the life cycle in which cells grow in the presence of a higher concentration of ethyl methanesulfonate than normal.","definition_xrefs":["PomBase:mlr"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased resistance to chemical during vegetative growth","termid":"FYPO:0000126"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000003"},{"rel_name":"is_a","termid":"FYPO:0000139"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0002682"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000003","FYPO:0000139","FYPO:0005447","FYPO:0002682"],"is_obsolete":false,"name":"resistance to ethyl methanesulfonate","synonyms":[{"name":"resistance to ethyl methanesulfonate during mitotic cell cycle","type":"related"},{"name":"resistance to ethyl methanesulfonate during vegetative growth","type":"exact"},{"name":"resistant to ethyl methanesulfonate","type":"exact"}],"termid":"FYPO:0009055"}


id: PBO:0077405
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TMEM139 antisense RNA 1","termid":"PBO:0077405"}


id: GO:0016716
data:
  {"annotated_genes":["SJAG_03018"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[69970],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0000254"}]},"cv_name":"molecular_function","definition":"Catalysis of an oxidation-reduction (redox) reaction in which hydrogen or electrons are transferred from each of two donors, and one atom of oxygen is incorporated into one donor.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"monooxygenase activity","termid":"GO:0004497"},{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen","termid":"GO:0016705"}],"gene_count":1,"genes_by_uniquename":{"SJAG_03018":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016491"],"is_obsolete":false,"name":"oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, another compound as one donor, and incorporation of one atom of oxygen","references_by_uniquename":{"GO_REF:0000033":null},"secondary_identifiers":["EC:1.14.18.-"],"termid":"GO:0016716","terms_by_termid":{"GO:0000254":null}}


id: PBO:0031260
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_late_endosome_to_vacuole_transport","termid":"PBO:0031260"}


id: PBO:0085382
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Plasma membrane ATP-binding cassette (ABC) transporter; multidrug transporter mediates export of many different organic anions including oligomycin; homolog of human cystic fibrosis transmembrane receptor (CFTR)","termid":"PBO:0085382"}


id: MOD:00197
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively crosslinks an L-glutamine residue and a glycine residue to form 2-imino-glutamine 5-imidazolinone glycine.","definition_xrefs":["PubMed:11050230","RESID:AA0189","PubMed:11209050"],"direct_ancestors":[{"relation_name":"is_a","term_name":"5-imidazolinone ring crosslinked residues (Gly)","termid":"MOD:01882"},{"relation_name":"is_a","term_name":"crosslinked L-glutamine residue","termid":"MOD:02046"},{"relation_name":"is_a","term_name":"crosslinked glycine residue","termid":"MOD:02047"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"2-imino-glutamine 5-imidazolinone glycine","synonyms":[{"name":"2,N-didehydroglutaminyl-5-imidazolinone glycine","type":"exact"},{"name":"2-(3-carbamoyl-1-imino-propyl)-1-carboxymethyl-1-imidazolin-5-one","type":"exact"},{"name":"2-imino-glutamine 5-imidazolinone glycine","type":"exact"},{"name":"CROSSLNK 2-iminomethyl-5-imidazolinone (Gln-Gly)","type":"exact"},{"name":"[2-(3-carbamoyl-1-imino-propyl)-5-oxo-4,5-dihydro-imidazol-1-yl]-acetic acid","type":"exact"},{"name":"[2-(4-amino-4-oxobutanimidoyl)-5-oxo-4,5-dihydro-1H-imidazol-1-yl]acetic acid","type":"exact"},{"name":"fluorescent protein FP583 chromophore","type":"exact"},{"name":"para-hydroxybenzylidene-imidazolidinone chromophore","type":"exact"},{"name":"red fluorescent protein chromophore","type":"exact"}],"termid":"MOD:00197"}


id: PBO:0084150
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"High affinity methionine permease; integral membrane protein with 13 putative membrane-spanning regions; involved in both methionine and cysteine uptake; subject to transport-activity dependent, methionine-induced endocytosis, vacuolar delivery and degradation; starvation-induced endocytosis is transport-activity independent","termid":"PBO:0084150"}


id: PBO:0057096
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 192","termid":"PBO:0057096"}


id: PBO:0045133
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dynein axonemal assembly factor 3","termid":"PBO:0045133"}


id: GO:0000345
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The eubacterial DNA-directed RNA polymerase is a multisubunit complex with a core composed of the essential subunits beta-prime, beta, and two copies of alpha and a fifth nonessential subunit called omega. An additional subunit, a sigma factor, is required for promoter recognition and specificity.","definition_xrefs":["PMID:11158566"],"direct_ancestors":[{"relation_name":"is_a","term_name":"DNA-directed RNA polymerase complex","termid":"GO:0000428"},{"relation_name":"part_of","term_name":"cytosol","termid":"GO:0005829"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005829"}],"interesting_parent_ids":["GO:0005737","GO:0032991","GO:0005575","GO:0005829"],"is_obsolete":false,"name":"cytosolic DNA-directed RNA polymerase complex","termid":"GO:0000345"}


id: PBO:0052270
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"lysine demethylase 4D","termid":"PBO:0052270"}


id: PBO:0011473
data:
  {"annotation_feature_type":"gene","cv_name":"cat_act","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"hydrolysis rate of maltose to glucose is 14.5 (mM min-1 ml-2)","termid":"PBO:0011473"}


id: PBO:0045690
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dynein light chain roadblock-type 1","termid":"PBO:0045690"}


id: PBO:0056790
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial fission factor","termid":"PBO:0056790"}


id: GO:0019898
data:
  {"annotated_genes":["SJAG_03081","SJAG_00638","SJAG_02233","SJAG_00115","SJAG_00721","SJAG_04000","SJAG_02699","SJAG_05398","SJAG_02605","SJAG_03403","SJAG_04552","SJAG_01249","SJAG_01043","SJAG_04266","SJAG_00459","SJAG_02289","SJAG_04026","SJAG_01140","SJAG_00852","SJAG_03563","SJAG_00230","SJAG_02444","SJAG_02665","SJAG_00655","SJAG_04860","SJAG_03456","SJAG_01876","SJAG_01783","SJAG_00114","SJAG_04963","SJAG_01236","SJAG_00933","SJAG_00576","SJAG_01911","SJAG_04642"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[71548,72875,78340,98208],"is_not":false,"summary":null,"term":"GO:0019898"},{"annotations":[105665],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0031234"},{"annotations":[95742,99013],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0099616"},{"annotations":[112054,101407,104661,112090,96564,102056,103344,85142,98485,104430,109922,86355],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0031314"},{"annotations":[102400],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0031315"},{"annotations":[90019],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0097629"},{"annotations":[90020],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0097632"},{"annotations":[89623,104172,102321,101689,108909],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0005834"},{"annotations":[108637,78454,83306,105128],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0070772"},{"annotations":[106627,71206,75528,76011,90023],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0034271"},{"annotations":[75529,76012,71207,100913],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0034272"}]},"cv_name":"cellular_component","definition":"The component of a membrane consisting of gene products and protein complexes that are loosely bound to one of its surfaces, but not integrated into the hydrophobic region.","definition_xrefs":["GOC:jl","GOC:mah","GOC:dos"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular anatomical entity","termid":"GO:0110165"},{"relation_name":"part_of","term_name":"membrane","termid":"GO:0016020"}],"gene_count":35,"genes_by_uniquename":{"SJAG_00114":null,"SJAG_00115":null,"SJAG_00230":null,"SJAG_00459":null,"SJAG_00576":null,"SJAG_00638":null,"SJAG_00655":null,"SJAG_00721":null,"SJAG_00852":null,"SJAG_00933":null,"SJAG_01043":null,"SJAG_01140":null,"SJAG_01236":null,"SJAG_01249":null,"SJAG_01783":null,"SJAG_01876":null,"SJAG_01911":null,"SJAG_02233":null,"SJAG_02289":null,"SJAG_02444":null,"SJAG_02605":null,"SJAG_02665":null,"SJAG_02699":null,"SJAG_03081":null,"SJAG_03403":null,"SJAG_03456":null,"SJAG_03563":null,"SJAG_04000":null,"SJAG_04026":null,"SJAG_04266":null,"SJAG_04552":null,"SJAG_04642":null,"SJAG_04860":null,"SJAG_04963":null,"SJAG_05398":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"extrinsic component of membrane","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"secondary_identifiers":["GO:0030396","Wikipedia:Peripheral_membrane_protein"],"synonyms":[{"name":"extrinsic to membrane","type":"exact"},{"name":"peripheral membrane protein","type":"exact"}],"termid":"GO:0019898","terms_by_termid":{"GO:0005834":null,"GO:0019898":null,"GO:0031234":null,"GO:0031314":null,"GO:0031315":null,"GO:0034271":null,"GO:0034272":null,"GO:0070772":null,"GO:0097629":null,"GO:0097632":null,"GO:0099616":null}}


id: PBO:0043153
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"capicua transcriptional repressor pseudogene 21","termid":"PBO:0043153"}


id: PBO:0091111
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"APC amino acid transmembrane transporter","termid":"PBO:0091111"}


id: PBO:0048500
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glycerophosphodiester phosphodiesterase 1","termid":"PBO:0048500"}


id: PBO:0063251
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protocadherin alpha subfamily C, 2","termid":"PBO:0063251"}


id: PBO:0047128
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"family with sequence similarity 169 member B, pseudogene","termid":"PBO:0047128"}


id: PR:000041443
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A core histone that is a translation product of the Schizosaccharomyces pombe cnp1 gene or a 1:1 ortholog thereof.","definition_xrefs":["PRO:DAN"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein","termid":"PR:000000001"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"histone H3-like centromeric protein cnp1","synonyms":[{"name":"CENP-A","type":"broad"},{"name":"centromere protein 1","type":"exact"},{"name":"centromere protein A","type":"broad"},{"name":"cnp1","type":"exact"},{"name":"cnp1 homolog","type":"exact"},{"name":"histone H3-like centromeric protein CENP-A","type":"broad"}],"termid":"PR:000041443"}


id: FYPO:0002943
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell morphology phenotype in which a cell is shaped in the form of a spheroid, and has a larger volume than normal, when the cell undergoes transition from G0 phase to G1. In spheroid cells, there is much less difference between the long and short axes of the cell than in wild type. Spheroid cells may shorter than normal, with approximately the same diameter as normal, or they may be enlarged.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"swollen spheroid cell","termid":"FYPO:0002941"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000005"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0000005","FYPO:0000002","FYPO:0001985"],"is_obsolete":false,"name":"swollen spheroid cell during G0 to G1 transition","synonyms":[{"name":"enlarged spheroid cell during G0 to G1 transition","type":"related"},{"name":"enlarged volume spheroid cell during G0 to G1 transition","type":"exact"},{"name":"large spheroid cell during G0 to G1 transition","type":"related"},{"name":"spheroid cell with increased cell size during G0 to G1 transition","type":"related"},{"name":"spheroid cell with increased cell volume during G0 to G1 transition","type":"exact"},{"name":"swollen rounded cell during G0 to G1 transition","type":"exact"},{"name":"swollen spheroid cell during cell cycle re-entry","type":"exact"},{"name":"swollen spheroid cell during cell quiescence to G1 transition","type":"exact"},{"name":"swollen spheroid cell during exit from cell quiescence","type":"exact"},{"name":"swollen spheroid cell during quiescence to G1 transition","type":"exact"},{"name":"swollen spheroid cell during recovery from quiescence","type":"exact"}],"termid":"FYPO:0002943"}


id: PBO:0071669
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L37 pseudogene 1","termid":"PBO:0071669"}


id: GO:0009962
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of flavonoids.","definition_xrefs":["GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of biosynthetic process","termid":"GO:0009889"},{"relation_name":"is_a","term_name":"regulation of primary metabolic process","termid":"GO:0080090"},{"relation_name":"regulates","term_name":"flavonoid biosynthetic process","termid":"GO:0009813"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of flavonoid biosynthetic process","synonyms":[{"name":"regulation of flavonoid anabolism","type":"exact"},{"name":"regulation of flavonoid biosynthesis","type":"exact"},{"name":"regulation of flavonoid formation","type":"exact"},{"name":"regulation of flavonoid synthesis","type":"exact"}],"termid":"GO:0009962"}


id: PBO:0088150
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Vacuole membrane protein that interacts with Atg8p; functions in the vacuolar membrane recruitment of Atg8p to facilitate the degradation of vacuolar integral membrane proteins during early-stationary vacuole turnover (EVT), a general degradation process for vacuolar integral membrane proteins when cells enter stationary phase; null mutant is defective in stationary phase-induced vacuolar microdomain formation; homolog of S. pombe hfl1; homolog of human TMEM184","termid":"PBO:0088150"}


id: PBO:0059110
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MOS proto-oncogene, serine/threonine kinase","termid":"PBO:0059110"}


id: PBO:0047647
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"FKBP prolyl isomerase 4","termid":"PBO:0047647"}


id: PBO:0072101
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein S12 pseudogene 32","termid":"PBO:0072101"}


id: PBO:0060030
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MT-ND4 pseudogene 18","termid":"PBO:0060030"}


id: PBO:0085328
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Phosphatidylinositol (PI) 3-kinase that synthesizes PI-3-phosphate; forms membrane-associated signal transduction complex with Vps15p to regulate protein sorting; activated by the GTP-bound form of Gpa1p; a fraction is localized, with Vps15p, to nuclear pores at nucleus-vacuole junctions and may facilitate transcription elongation for genes positioned at the nuclear periphery","termid":"PBO:0085328"}


id: FYPO:0000174
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which cell wall biogenesis is abnormal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"has_output","term_name":"abnormal cell wall","termid":"FYPO:0002946"},{"relation_name":"is_a","term_name":"abnormal cellular process","termid":"FYPO:0000628"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0000002","FYPO:0001985"],"is_obsolete":false,"name":"abnormal cell wall biogenesis","synonyms":[{"name":"abnormal fungal-type cell wall biogenesis","type":"exact"}],"termid":"FYPO:0000174"}


id: GO:1903797
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of inorganic anion transmembrane transport.","definition_xrefs":["GOC:TermGenie","PMID:11336802","GO_REF:0000058"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of transmembrane transport","termid":"GO:0034764"},{"relation_name":"is_a","term_name":"regulation of inorganic anion transmembrane transport","termid":"GO:1903795"},{"relation_name":"positively_regulates","term_name":"inorganic anion transmembrane transport","termid":"GO:0098661"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"positively_regulates","termid":"GO:0055085"},{"rel_name":"positively_regulates","termid":"GO:0006810"},{"rel_name":"regulates","termid":"GO:0055085"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0006810","GO:0055085"],"is_obsolete":false,"name":"positive regulation of inorganic anion transmembrane transport","synonyms":[{"name":"activation of inorganic anion membrane transport","type":"narrow"},{"name":"activation of inorganic anion transmembrane transport","type":"narrow"},{"name":"activation of transmembrane inorganic anion transport","type":"narrow"},{"name":"positive regulation of inorganic anion membrane transport","type":"exact"},{"name":"positive regulation of transmembrane inorganic anion transport","type":"exact"},{"name":"up regulation of inorganic anion membrane transport","type":"exact"},{"name":"up regulation of inorganic anion transmembrane transport","type":"exact"},{"name":"up regulation of transmembrane inorganic anion transport","type":"exact"},{"name":"up-regulation of inorganic anion membrane transport","type":"exact"},{"name":"up-regulation of inorganic anion transmembrane transport","type":"exact"},{"name":"up-regulation of transmembrane inorganic anion transport","type":"exact"},{"name":"upregulation of inorganic anion membrane transport","type":"exact"},{"name":"upregulation of inorganic anion transmembrane transport","type":"exact"},{"name":"upregulation of transmembrane inorganic anion transport","type":"exact"}],"termid":"GO:1903797"}


id: SO:0000416
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"An attribute to describe a feature that is invalidated due to partial processing.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"invalidated","termid":"SO:0000790"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"invalidated_by_partial_processing","synonyms":[{"name":"invalidated by partial processing","type":"exact"}],"termid":"SO:0000416"}


id: PBO:0069804
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 1090, pseudogene","termid":"PBO:0069804"}


id: FYPO:0004746
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which heterochromatin assembly involved in chromatin silencing at the centromere outer repeat region does not occur.","definition_xrefs":["PMID:24240238","GO:0031507","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal heterochromatin assembly at centromere outer repeat during vegetative growth","termid":"FYPO:0003098"},{"relation_name":"is_a","term_name":"abolished cellular process","termid":"FYPO:0005449"},{"relation_name":"is_a","term_name":"abnormal chromatin remodeling","termid":"FYPO:0006356"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000641"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0001985","FYPO:0000641","FYPO:0005447","FYPO:0000002"],"is_obsolete":false,"name":"abolished heterochromatin assembly involved in chromatin silencing at centromere outer repeat","synonyms":[{"name":"abolished heterochromatin assembly involved in chromatin silencing at centromere otr","type":"exact"},{"name":"abolished heterochromatin assembly involved in chromatin silencing at centromere outer repeat during mitotic cell cycle","type":"related"},{"name":"abolished heterochromatin assembly involved in chromatin silencing at centromere outer repeat during vegetative growth","type":"exact"},{"name":"abolished heterochromatin assembly involved in chromatin silencing at centromere outer repeat region","type":"exact"},{"name":"abolished heterochromatin assembly involved in chromatin silencing at pericentric region","type":"related"},{"name":"abolished heterochromatin assembly involved in chromatin silencing at pericentromeric region","type":"related"},{"name":"heterochromatin assembly involved in chromatin silencing at centromere outer repeat abolished","type":"exact"}],"termid":"FYPO:0004746"}


id: GO:1903179
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of dopamine biosynthetic process.","definition_xrefs":["GO_REF:0000058","GOC:PARL","GOC:bf","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of cellular biosynthetic process","termid":"GO:0031326"},{"relation_name":"is_a","term_name":"regulation of dopamine metabolic process","termid":"GO:0042053"},{"relation_name":"regulates","term_name":"dopamine biosynthetic process","termid":"GO:0042416"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of dopamine biosynthetic process","synonyms":[{"name":"regulation of dopamine anabolism","type":"exact"},{"name":"regulation of dopamine biosynthesis","type":"exact"},{"name":"regulation of dopamine formation","type":"exact"},{"name":"regulation of dopamine synthesis","type":"exact"}],"termid":"GO:1903179"}


id: PBO:0031101
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abolished_septum_formation","termid":"PBO:0031101"}


id: PR:Q9P805
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- dcp1 gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q9P805"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mRNA-decapping enzyme subunit 1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC3B9.21","synonyms":[{"name":"Spom972h-dcp1","type":"exact"}],"termid":"PR:Q9P805"}


id: GO:0042848
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of sorbose, the ketohexose xylo-2-hexulose. Sorbose is produced commercially by fermentation and is used as an intermediate in the manufacture of ascorbic acid.","definition_xrefs":["ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"sorbose metabolic process","termid":"GO:0019311"},{"relation_name":"is_a","term_name":"hexose catabolic process","termid":"GO:0019320"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0005975"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0005975","GO:0008150","GO:0044281"],"is_obsolete":false,"name":"sorbose catabolic process","synonyms":[{"name":"sorbose breakdown","type":"exact"},{"name":"sorbose catabolism","type":"exact"},{"name":"sorbose degradation","type":"exact"}],"termid":"GO:0042848"}


id: GO:0018948
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving xylene, a mixture of three colorless, aromatic hydrocarbon liquids, ortho-, meta- and para-xylene.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"benzene-containing compound metabolic process","termid":"GO:0042537"},{"relation_name":"is_a","term_name":"hydrocarbon metabolic process","termid":"GO:0120252"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"xylene metabolic process","synonyms":[{"name":"xylene metabolism","type":"exact"}],"termid":"GO:0018948"}


id: PBO:0058911
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 12129","termid":"PBO:0058911"}


id: GO:0140700
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: ATP + GTP = 2 diphosphate + cyclic G-P(3'-5')A-P(2'-5') (cyclic 3',2' GAMP).","definition_xrefs":["PMID:34261127"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cyclic GMP-AMP synthase activity","termid":"GO:0140699"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016779"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016740"}],"interesting_parent_ids":["GO:0003674","GO:0016740","GO:0016779","GO:0003824"],"is_obsolete":false,"name":"3',2'-cyclic GMP-AMP synthase activity","synonyms":[{"name":"3',2' cyclic-GMP-AMP synthase activity","type":"exact"},{"name":"3',2'-cyclic GAMP synthase activity","type":"exact"}],"termid":"GO:0140700"}


id: GO:1905493
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of G-quadruplex DNA binding.","definition_xrefs":["GO_REF:0000059","PMID:26503245","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of DNA binding","termid":"GO:0051101"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of G-quadruplex DNA binding","synonyms":[{"name":"regulation of G quadruplex DNA binding","type":"exact"},{"name":"regulation of G quartet DNA binding","type":"exact"},{"name":"regulation of G quartet binding","type":"broad"},{"name":"regulation of G-DNA binding","type":"exact"},{"name":"regulation of G-quartet DNA binding","type":"exact"},{"name":"regulation of G-quartet binding","type":"broad"},{"name":"regulation of quadruplex DNA binding","type":"exact"},{"name":"regulation of tetraplex DNA binding","type":"exact"}],"termid":"GO:1905493"}


id: GO:0014873
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a muscle activity stimulus. This process occurs as part of the regulation of muscle adaptation.","definition_xrefs":["GOC:mtg_muscle","GOC:ef"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to muscle activity","termid":"GO:0014850"},{"relation_name":"is_a","term_name":"response to stimulus involved in regulation of muscle adaptation","termid":"GO:0014874"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"response to muscle activity involved in regulation of muscle adaptation","synonyms":[{"name":"response to fatigue","type":"exact"},{"name":"response to muscle activity involved in regulation of muscle plasticity","type":"related"}],"termid":"GO:0014873"}


id: PR:Q9HDX7
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPAPB1A10.13 gene.","definition_xrefs":["UniProtKB:Q9HDX7","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized protein PB1A10.13 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAPB1A10.13","synonyms":[{"name":"Spom972h-SPAPB1A10.13","type":"exact"}],"termid":"PR:Q9HDX7"}


id: GO:1900330
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of methane biosynthetic process from trimethylamine.","definition_xrefs":["GOC:TermGenie","GOC:mengo_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of amine metabolic process","termid":"GO:0033238"},{"relation_name":"is_a","term_name":"regulation of cellular respiration","termid":"GO:0043457"},{"relation_name":"is_a","term_name":"regulation of alkane biosynthetic process","termid":"GO:1901577"},{"relation_name":"regulates","term_name":"methane biosynthetic process from trimethylamine","termid":"GO:2001130"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0006091"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006091","GO:0008150"],"is_obsolete":false,"name":"regulation of methane biosynthetic process from trimethylamine","termid":"GO:1900330"}


id: GO:0030485
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The contractile fiber of smooth muscle cells.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"contractile fiber","termid":"GO:0043292"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005737"}],"interesting_parent_ids":["GO:0005737","GO:0005575"],"is_obsolete":false,"name":"smooth muscle contractile fiber","termid":"GO:0030485"}


id: PBO:0083195
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Dubious open reading frame; unlikely to encode a functional protein, based on available experimental and comparative sequence data; completely overlaps the verified gene GIP3/YPL137C","termid":"PBO:0083195"}


id: GO:0004604
data:
  {"annotated_genes":["SJAG_04060"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[78232],"is_not":false,"summary":null,"term":"GO:0004604"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: adenosine 3',5'-diphosphate + H+ + sulfite + thioredoxin disulfide = 3'-phospho-5'-adenylyl sulfate + thioredoxin. Thioredoxin disulfide is the oxidized form of thioredoxin; 3'-phosphoadenosine 5'-phosphosulfate is also known as PAPS.","definition_xrefs":["EC:1.8.4.8","RHEA:11724"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor","termid":"GO:0016671"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04060":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0016491","GO:0003824"],"is_obsolete":false,"name":"phosphoadenylyl-sulfate reductase (thioredoxin) activity","references_by_uniquename":{"GO_REF:0000033":null},"secondary_identifiers":["KEGG_REACTION:R02021","MetaCyc:1.8.4.8-RXN"],"synonyms":[{"name":"3'-phosphoadenylylsulfate reductase activity","type":"related"},{"name":"PAPS reductase activity","type":"related"},{"name":"PAPS reductase, thioredoxin-dependent activity","type":"related"},{"name":"PAPS sulfotransferase activity","type":"related"},{"name":"PAdoPS reductase activity","type":"related"},{"name":"adenosine 3',5'-bisphosphate,sulfite:oxidized-thioredoxin oxidoreductase (3'-phosphoadenosine-5'-phosphosulfate-forming)","type":"related"},{"name":"adenosine 3',5'-bisphosphate,sulfite:thioredoxin-disulfide oxidoreductase (3'-phosphoadenosine-5'-phosphosulfate-forming)","type":"related"},{"name":"phosphoadenosine-phosphosulfate reductase activity","type":"related"},{"name":"phosphoadenylyl-sulphate reductase (thioredoxin) activity","type":"exact"},{"name":"thioredoxin:3'-phospho-adenylylsulfate reductase activity","type":"related"},{"name":"thioredoxin:adenosine 3'-phosphate 5'-phosphosulfate reductase activity","type":"related"}],"termid":"GO:0004604","terms_by_termid":{"GO:0004604":null}}


id: PBO:0051855
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"iron-sulfur cluster assembly 1 pseudogene 1","termid":"PBO:0051855"}


id: PR:O59698
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A glycerol-3-phosphate transporter GlpT that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx","OMA:SCHPO02606"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized transporter C36.01c (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC36.01c","secondary_identifiers":["UniProtKB:O59698"],"synonyms":[{"name":"Spom972h-glpT","type":"exact"}],"termid":"PR:O59698"}


id: GO:0030275
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a LRR domain (leucine rich repeats) of a protein.","definition_xrefs":["GOC:go_curators","Pfam:PF00560"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein domain specific binding","termid":"GO:0019904"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005515"}],"interesting_parent_ids":["GO:0005488","GO:0003674","GO:0005515"],"is_obsolete":false,"name":"LRR domain binding","termid":"GO:0030275"}


id: PBO:0004681
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transcription elongation factor complex subunit Spt4","termid":"PBO:0004681"}


id: GO:1904260
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of basement membrane assembly involved in embryonic body morphogenesis.","definition_xrefs":["GOC:TermGenie","PMID:23940118","GOC:als","GO_REF:0000058"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of developmental process","termid":"GO:0051093"},{"relation_name":"is_a","term_name":"negative regulation of extracellular matrix assembly","termid":"GO:1901202"},{"relation_name":"is_a","term_name":"regulation of basement membrane assembly involved in embryonic body morphogenesis","termid":"GO:1904259"},{"relation_name":"negatively_regulates","term_name":"basement membrane assembly involved in embryonic body morphogenesis","termid":"GO:2001197"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0044085"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0044085"],"is_obsolete":false,"name":"negative regulation of basement membrane assembly involved in embryonic body morphogenesis","synonyms":[{"name":"down regulation of basement membrane assembly involved in embryonic body morphogenesis","type":"exact"},{"name":"down-regulation of basement membrane assembly involved in embryonic body morphogenesis","type":"exact"},{"name":"downregulation of basement membrane assembly involved in embryonic body morphogenesis","type":"exact"},{"name":"inhibition of basement membrane assembly involved in embryonic body morphogenesis","type":"narrow"}],"termid":"GO:1904260"}


id: PBO:0053326
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 115","termid":"PBO:0053326"}


id: FYPO:0000680
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A developmental process phenotype in which ascus development is abnormal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"developmental process phenotype","termid":"FYPO:0000679"},{"relation_name":"is_a","term_name":"abnormal biological process","termid":"FYPO:0005447"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0005447"],"is_obsolete":false,"name":"abnormal ascus development","termid":"FYPO:0000680"}


id: PBO:0063443
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"phosphodiesterase 6G","termid":"PBO:0063443"}


id: GO:0061420
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Modulation of the frequency, rate or extent of transcription from an RNA polymerase II promoter as a result of deprivation of biotin.","definition_xrefs":["PMID:16533810","GOC:dph"],"gene_count":0,"genotype_count":0,"name":"obsolete regulation of transcription from RNA polymerase II promoter in response to biotin starvation (obsolete GO:0061420)","termid":"GO:0061420"}


id: PBO:0003222
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"40S ribosomal protein S29 (predicted)","termid":"PBO:0003222"}


id: PBO:0055801
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"lysophosphatidic acid receptor 3","termid":"PBO:0055801"}


id: MOD:00117
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively crosslinks an L-cysteine residue and an L-glutamine residue by a thioester bond with the formation of S-(L-isoglutamyl)-L-cysteine and the release of ammonia.","definition_xrefs":["RESID:AA0108","PubMed:6838833","ChEBI:22021","DeltaMass:0"],"direct_ancestors":[{"relation_name":"is_a","term_name":"thioester crosslinked residues","termid":"MOD:00395"},{"relation_name":"is_a","term_name":"crosslinked residues with loss of ammonia","termid":"MOD:00946"},{"relation_name":"is_a","term_name":"crosslinked L-glutamine residue","termid":"MOD:02046"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"S-(L-isoglutamyl)-L-cysteine","synonyms":[{"name":"(2S)-2-amino-5-[(2R)-2-amino-2-carboxyethyl]sulfanyl-5-oxopentanoic acid","type":"exact"},{"name":"(S,R)-2-amino-4-[S-(2-amino-2-carboxyethyl)thiocarboxy]butanoic acid","type":"exact"},{"name":"2-amino-5-(2-amino-2-carboxyethyl)thio-5-oxopentanoic acid","type":"exact"},{"name":"CROSSLNK Isoglutamyl cysteine thioester (Cys-Gln)","type":"exact"},{"name":"S-(L-isoglutamyl)-L-cysteine","type":"exact"},{"name":"S-gamma-glutamyl (crosslinked to cysteine)","type":"exact"},{"name":"XLNK-SCys-5Glu(Gln)","type":"exact"},{"name":"gamma-(S-cysteinyl)glutamic acid","type":"exact"}],"termid":"MOD:00117"}


id: PBO:0076463
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"trafficking regulator and scaffold protein tamalin","termid":"PBO:0076463"}


id: _global:results_in_movement_of
data:
  {"annotation_feature_type":"gene","cv_name":"go/extensions/gorel","definition":"Holds between p and c when p is locomotion process and the outcome of this process is the change of location of c","direct_ancestors":[{"relation_name":"is_a","term_name":"go_annotation_extension_relation","termid":"_global:go_annotation_extension_relation"},{"relation_name":"is_a","term_name":"results_in_changes_to_anatomical_or_cellular_structure","termid":"_global:results_in_changes_to_anatomical_or_cellular_structure"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"results_in_movement_of","secondary_identifiers":["GOREL:0001001","RO:0002565"],"termid":"_global:results_in_movement_of"}


id: GO:0016250
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: N-sulfo-D-glucosamine + H2O = D-glucosamine + sulfate.","definition_xrefs":["EC:3.10.1.1"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hydrolase activity, acting on acid sulfur-nitrogen bonds","termid":"GO:0016826"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016787"],"is_obsolete":false,"name":"N-sulfoglucosamine sulfohydrolase activity","secondary_identifiers":["MetaCyc:N-SULFOGLUCOSAMINE-SULFOHYDROLASE-RXN","Reactome:R-HSA-1678708","Reactome:R-HSA-2263444","Reactome:R-HSA-9036050","Reactome:R-HSA-2090043","RHEA:17881"],"synonyms":[{"name":"2-desoxy-D-glucoside-2-sulphamate sulphohydrolase (sulphamate sulphohydrolase)","type":"related"},{"name":"N-sulfo-D-glucosamine sulfohydrolase activity","type":"related"},{"name":"N-sulphoglucosamine sulphohydrolase activity","type":"exact"},{"name":"heparin sulfamidase activity","type":"related"},{"name":"sulfoglucosamine sulfamidase activity","type":"related"},{"name":"sulphamidase activity","type":"related"}],"termid":"GO:0016250"}


id: PR:Q10951
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- byr4 gene.","definition_xrefs":["UniProtKB:Q10951","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protein byr4 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC222.10c","synonyms":[{"name":"Spom972h-byr4","type":"exact"}],"termid":"PR:Q10951"}


id: PBO:0014290
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"KRE9 family cell wall 1,6-beta-glucan biosynthesis protein (predicted)","termid":"PBO:0014290"}


id: PBO:0085464
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Predicted tail-anchored plasma membrane protein; contains conserved CYSTM module; related proteins in other organisms may be involved in response to stress; N- and C-terminal fusion proteins localize to the cell periphery; YDR034W-B has a paralog, YBR056W-A, that arose from the whole genome duplication","termid":"PBO:0085464"}


id: GO:0009695
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of jasmonic acid, a fatty acid derivative.","definition_xrefs":["PMID:33821356"],"direct_ancestors":[{"relation_name":"is_a","term_name":"jasmonic acid metabolic process","termid":"GO:0009694"},{"relation_name":"is_a","term_name":"long-chain fatty acid biosynthetic process","termid":"GO:0042759"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006629"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0008150","GO:0044281","GO:0006629"],"is_obsolete":false,"name":"jasmonic acid biosynthetic process","secondary_identifiers":["MetaCyc:PWY-735"],"synonyms":[{"name":"jasmonic acid anabolism","type":"exact"},{"name":"jasmonic acid biosynthesis","type":"exact"},{"name":"jasmonic acid formation","type":"exact"},{"name":"jasmonic acid synthesis","type":"exact"}],"termid":"GO:0009695"}


id: PBO:0065828
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RAB6C, member RAS oncogene family","termid":"PBO:0065828"}


id: GO:0140074
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A transition where a cardiac endothelial cell loses apical/basolateral polarity, severs intercellular adhesive junctions, degrades basement membrane components and becomes a migratory mesenchymal cell. Endocardial cells (specialized endothelial cells that line the heart) undergo EndMT, and give rise to mesenchymal cells necessary for proper heart development. EndMT, specifically generates valve progenitor cells that give rise to the mitral and tricuspid valves. EndMT also contributes to endocardial cushion formation, as well as to generation of cardiac fibroblasts and smooth muscle cells, but not cardiac myocytes.","definition_xrefs":["GOC:BHF","GOC:nc","PMID:16162442","PMID:26053665"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mesenchymal cell differentiation","termid":"GO:0048762"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cardiac endothelial to mesenchymal transition","synonyms":[{"name":"EndMT","type":"exact"},{"name":"EndoMT","type":"exact"}],"termid":"GO:0140074"}


id: FYPO:0007765
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A gene expression phenotype in which protein levels that normally vary over the course of the mitotic cell cycle do not vary, or change in a pattern different from normal. Total protein or a specific protein may be affected.","definition_xrefs":["PMID:9430640","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"gene expression regulation phenotype during vegetative growth","termid":"FYPO:0001333"},{"relation_name":"is_a","term_name":"abnormal phenotype","termid":"FYPO:0001985"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0001320","FYPO:0000002"],"is_obsolete":false,"name":"abnormal protein level oscillation during mitotic cell cycle","synonyms":[{"name":"abnormal periodic protein expression during mitotic cell cycle","type":"exact"},{"name":"abnormal protein level fluctuation during mitotic cell cycle","type":"exact"}],"termid":"FYPO:0007765"}


id: PBO:0077607
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transmembrane serine protease 13","termid":"PBO:0077607"}


id: MOD:00305
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts six L-cysteine residues, an L-serine residue and a eight-iron seven-sulfur cluster to hexakis-L-cysteinyl L-serinyl octairon heptasulfide.","definition_xrefs":["PubMed:9063865","RESID:AA0300","PubMed:12215645","PubMed:10525412"],"direct_ancestors":[{"relation_name":"is_a","term_name":"iron-sulfur cluster containing modification","termid":"MOD:00739"},{"relation_name":"is_a","term_name":"metal or metal cluster coordinated L-cysteine residue","termid":"MOD:02067"},{"relation_name":"is_a","term_name":"metal or metal cluster coordinated L-serine residue","termid":"MOD:02072"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"hexakis-L-cysteinyl L-serinyl octairon heptasulfide","synonyms":[{"name":"Cys6Ser-[8Fe7S]","type":"exact"},{"name":"METAL Iron-sulfur (8Fe-7S)","type":"exact"},{"name":"hexakis-L-cysteinyl L-serinyl octairon heptasulfide","type":"exact"},{"name":"nitrogenase P-cluster","type":"exact"}],"termid":"MOD:00305"}


id: GO:0051604
data:
  {"annotated_genes":["SJAG_01545","SJAG_01073","SJAG_04014","SJAG_00750","SJAG_01471","SJAG_01647","SJAG_02367","SJAG_04817","SJAG_02301","SJAG_00893","SJAG_02397","SJAG_00524","SJAG_02214","SJAG_04352","SJAG_04741","SJAG_04074","SJAG_03955","SJAG_01826","SJAG_02745","SJAG_00040","SJAG_05338","SJAG_01750","SJAG_03315","SJAG_00079","SJAG_01641","SJAG_00822","SJAG_02902","SJAG_01664","SJAG_03231","SJAG_01147","SJAG_04398","SJAG_01283","SJAG_01838","SJAG_01510","SJAG_04514","SJAG_01896","SJAG_03601","SJAG_00112","SJAG_01121","SJAG_04046","SJAG_03524","SJAG_00449","SJAG_03648","SJAG_07016","SJAG_03794","SJAG_03022","SJAG_02032","SJAG_06636","SJAG_01052","SJAG_03238","SJAG_00436","SJAG_02497","SJAG_01186","SJAG_05206","SJAG_02867","SJAG_00505","SJAG_01747","SJAG_04553","SJAG_01684","SJAG_03320","SJAG_06449","SJAG_01164","SJAG_03913","SJAG_04896","SJAG_02461","SJAG_00564","SJAG_01179","SJAG_02378","SJAG_01004","SJAG_00790","SJAG_03215","SJAG_04602","SJAG_04016","SJAG_03166","SJAG_04785","SJAG_04228","SJAG_05191","SJAG_03717","SJAG_02432","SJAG_00954","SJAG_05189","SJAG_03570","SJAG_04567","SJAG_02014","SJAG_03784","SJAG_00353","SJAG_00574","SJAG_03094","SJAG_02489","SJAG_02875","SJAG_04336","SJAG_05414","SJAG_01246","SJAG_01160","SJAG_01417","SJAG_02980","SJAG_03992","SJAG_04012","SJAG_02926","SJAG_04844","SJAG_01714","SJAG_02474","SJAG_04631","SJAG_03267","SJAG_00403","SJAG_04533","SJAG_00447","SJAG_02033","SJAG_03069","SJAG_03537","SJAG_00609","SJAG_03052","SJAG_04055","SJAG_02565","SJAG_02726","SJAG_01868","SJAG_01874","SJAG_02694","SJAG_01002","SJAG_04679","SJAG_00181","SJAG_04187","SJAG_04179","SJAG_04121","SJAG_01430","SJAG_04784","SJAG_00288","SJAG_03815","SJAG_02895","SJAG_03532","SJAG_02866","SJAG_03135","SJAG_03737","SJAG_03121","SJAG_05016","SJAG_03553","SJAG_01626","SJAG_01615","SJAG_03222","SJAG_03386","SJAG_03237","SJAG_03414","SJAG_02270","SJAG_02920","SJAG_04131","SJAG_03701","SJAG_05351","SJAG_02413","SJAG_01737","SJAG_04641","SJAG_04371","SJAG_02825","SJAG_02919","SJAG_01914","SJAG_03045","SJAG_00558","SJAG_04518","SJAG_02672","SJAG_01526","SJAG_01038","SJAG_03261","SJAG_03463","SJAG_04197","SJAG_02827","SJAG_04511","SJAG_02495","SJAG_03030","SJAG_01733","SJAG_02809","SJAG_00730","SJAG_00196","SJAG_03396"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[84918,97100,97821,98828,100446,100696,102599,103719,105548,107778,107879,109796,110379,111804,112959,113493],"is_not":false,"summary":null,"term":"GO:0051604"},{"annotations":[98972,93253,93892,95994,112621,102484,112719,92908,78355,83058,99918],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0051083"},{"annotations":[90989,77259,84824],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0006458"},{"annotations":[69939,74011],"is_not":false,"rel_names":["part_of","is_a"],"summary":null,"term":"GO:0071586"},{"annotations":[89268,112820,111799,90426],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0061077"},{"annotations":[67293],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0016539"},{"annotations":[76772,98329,83804,96331,76039],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0034982"},{"annotations":[88594,83412],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0071432"},{"annotations":[85077],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0007323"},{"annotations":[88909,95851,97709,91917],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0007023"},{"annotations":[90047,91780,88595,99588],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0016540"},{"annotations":[105149,86706,77601,75546,76569,74034,99594,88364,112232,76930,92857,112912,92493,109603,69935,99662,76708,69783,78176,105148,108550,93184,101680,111363,113528,72422,105020,105975,110756,75394,73029,75196,76639,69789,85475,58575,78035,92323,75151,78385,74444,93777,101447,104673,94786,75182,78182,76693],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0006457"},{"annotations":[105119,98355,105948,98187,87746,84162,105176,98440,109837,91701,108737,87771,113355,100424,91096,86369],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0034975"},{"annotations":[96896],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0106034"},{"annotations":[111145,78327,84501,99996,70583,95326,99524,91029,109820,83219],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0106035"},{"annotations":[99946,97391,102670],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0015680"},{"annotations":[95771,71304],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0097428"},{"annotations":[90802,92182,113923],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0110147"},{"annotations":[76990],"is_not":false,"rel_names":["part_of","is_a"],"summary":null,"term":"GO:0022417"},{"annotations":[75695,101333,95526,84665,100960,98536,105180],"is_not":false,"rel_names":["is_a"],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id: PBO:0083949
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Gamma subunit of the oligosaccharyltransferase complex of the ER lumen; complex catalyzes asparagine-linked glycosylation of newly synthesized proteins; Ost3p is important for N-glycosylation of a subset of proteins including modification of Pmt2p at N131 and N403","termid":"PBO:0083949"}


id: PR:O59676
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- pdp1 gene.","definition_xrefs":["PRO:DNx","UniProtKB:O59676"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PWWP domain-containing protein 1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC29A3.13","synonyms":[{"name":"Spom972h-pdp1","type":"exact"},{"name":"set9-associated factor pdp1 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:O59676"}


id: GO:0033648
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"Organized structure of distinctive morphology and function, as found in host cells, bounded by a single or double lipid bilayer membrane and occurring within the cell. Includes the nucleus, mitochondria, plastids, vacuoles, and vesicles. Excludes the plasma membrane. The host is defined as the larger of the organisms involved in a symbiotic interaction.","definition_xrefs":["GOC:pamgo_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"host intracellular organelle","termid":"GO:0033647"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"host intracellular membrane-bounded organelle","synonyms":[{"name":"host intracellular membrane-enclosed organelle","type":"exact"}],"termid":"GO:0033648"}


id: GO:0001173
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process involved in the selection of the specific location within the template strand of a DNA-dependent RNA polymerase promoter for hybridization of the cognate ribonucleotides and formation of first phosphodiester bond within the nascent transcript.","definition_xrefs":["GOC:txnOH","PMID:18846104","PMID:16826228"],"direct_ancestors":[{"relation_name":"is_a","term_name":"RNA biosynthetic process","termid":"GO:0032774"},{"relation_name":"part_of","term_name":"DNA-templated transcription initiation","termid":"GO:0006352"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0006351"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0006351","GO:0008150","GO:0010467"],"is_obsolete":false,"name":"DNA-templated transcriptional start site selection","secondary_identifiers":["GO:0001176"],"synonyms":[{"name":"DNA-dependent transcriptional start site selection","type":"exact"},{"name":"transcriptional start site selection at bacterial-type RNA polymerase promoter","type":"narrow"}],"termid":"GO:0001173"}


id: FYPO:0002553
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which double-strand break processing is abnormal. Double-strand break processing is the 5' to 3' exonucleolytic resection of the DNA at the site of the break to form a 3' single-strand DNA overhang.","definition_xrefs":["GO:0000729","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal double-strand break repair during vegetative growth","termid":"FYPO:0000777"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000293"},{"rel_name":"is_a","termid":"FYPO:0000298"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0001320","FYPO:0001985","FYPO:0000002","FYPO:0000293","FYPO:0000298"],"is_obsolete":false,"name":"abnormal double-strand break processing","synonyms":[{"name":"abnormal DSB processing","type":"exact"},{"name":"abnormal double-strand break processing during mitotic cell cycle","type":"related"},{"name":"abnormal double-strand break processing during vegetative growth","type":"exact"}],"termid":"FYPO:0002553"}


id: PBO:0084277
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Integral membrane protein localized to mitochondria; required for sporulation and maintaining sphingolipid content; similar to SUR7; FMP45 has a paralog, YNL194C, that arose from the whole genome duplication","termid":"PBO:0084277"}


id: PBO:0039219
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"aldo-keto reductase family 1 member D1 pseudogene 1","termid":"PBO:0039219"}


id: PBO:0053000
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"laminin subunit beta 4","termid":"PBO:0053000"}


id: PBO:0011131
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"meiotic dynein intermediate chain Dic1","termid":"PBO:0011131"}


id: PBO:0049721
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"HAUS5 divergent transcript","termid":"PBO:0049721"}


id: PBO:0055532
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2967","termid":"PBO:0055532"}


id: GO:1905744
data:
  {"annotated_genes":["SJAG_01511","SJAG_01040"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[93899],"is_not":false,"summary":null,"term":"GO:1905744"},{"annotations":[113366],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1905746"}]},"cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of mRNA cis splicing, via spliceosome.","definition_xrefs":["GO_REF:0000058","GOC:TermGenie","PMID:2880558"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of mRNA splicing, via spliceosome","termid":"GO:0048024"},{"relation_name":"regulates","term_name":"mRNA cis splicing, via spliceosome","termid":"GO:0045292"}],"gene_count":2,"genes_by_uniquename":{"SJAG_01040":null,"SJAG_01511":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0016071"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0016071","GO:0010467","GO:0008150"],"is_obsolete":false,"name":"regulation of mRNA cis splicing, via spliceosome","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"regulation of nuclear mRNA cis splicing, via U2-type spliceosome","type":"narrow"},{"name":"regulation of nuclear mRNA cis splicing, via spliceosome","type":"exact"},{"name":"regulation of splicing","type":"broad"}],"termid":"GO:1905744","terms_by_termid":{"GO:1905744":null,"GO:1905746":null}}


id: PBO:0054780
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2193","termid":"PBO:0054780"}


id: GO:0050240
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: O2 + pyrogallol = (Z)-5-oxohex-2-enedioate + 2 H+.","definition_xrefs":["RHEA:19673","EC:1.13.11.35"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen","termid":"GO:0016702"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016491","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"pyrogallol 1,2-oxygenase activity","secondary_identifiers":["KEGG_REACTION:R03246","MetaCyc:PYROGALLOL-12-OXYGENASE-RXN"],"synonyms":[{"name":"1,2,3-trihydroxybenzene:oxygen 1,2-oxidoreductase (decyclizing)","type":"related"},{"name":"pyrogallol 1,2-dioxygenase activity","type":"related"}],"termid":"GO:0050240"}


id: PBO:0046789
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"EZH inhibitory protein","termid":"PBO:0046789"}


id: PBO:0075924
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ST13, Hsp70 interacting protein pseudogene 16","termid":"PBO:0075924"}


id: PBO:0084502
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Meiosis-specific protein required for prospore membrane morphogenesis; required for the proper shape of the prospore membrane (PSM) and for spore wall formation; functions cooperatively with SPO71 in PSM elongation; physically interacts with Spo71p; genetically antagonistic to SPO1, similar to SPO71; localizes to the PSM; required for spore wall formation during sporulation; dispensable for both nuclear divisions during meiosis; dysferlin domain-only protein","termid":"PBO:0084502"}


id: GO:0070992
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A ribonucleoprotein complex that contains a ribosome, mRNA, and initiator tRNA; the functional ribosome is at the AUG, with the methionyl/formyl-methionyl-tRNA positioned at the P site.","definition_xrefs":["GOC:mah","GOC:hjd"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ribonucleoprotein complex","termid":"GO:1990904"},{"relation_name":"part_of","term_name":"cytoplasm","termid":"GO:0005737"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005737","GO:0005575","GO:0032991"],"is_obsolete":false,"name":"translation initiation complex","termid":"GO:0070992"}


id: PBO:0001184
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nucleoporin Pom34","termid":"PBO:0001184"}


id: PBO:0071672
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L37 pseudogene 4","termid":"PBO:0071672"}


id: PBO:0040202
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"asteroid homolog 1","termid":"PBO:0040202"}


id: PATO:0000060
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A spatial quality inhering in a bearer by virtue of the bearer's exhibiting repetition of placement of its parts.","definition_xrefs":["PATOC:GVG"],"direct_ancestors":[{"relation_name":"is_a","term_name":"position","termid":"PATO:0000140"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"spatial pattern","secondary_identifiers":["PATO:0001565","PATO:0000132"],"synonyms":[{"name":"distribution","type":"exact"},{"name":"pattern","type":"related"}],"termid":"PATO:0000060"}


id: PBO:0027136
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-circularized_chromosome_during_mitotic_G2_phase","termid":"PBO:0027136"}


id: GO:0051447
data:
  {"annotated_genes":["SJAG_04280","SJAG_00266","SJAG_01330","SJAG_01515","SJAG_00364","SJAG_04287","SJAG_02481","SJAG_01082","SJAG_01680","SJAG_03854","SJAG_03327","SJAG_02771","SJAG_04259","SJAG_03438","SJAG_03529","SJAG_01837","SJAG_04140"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[111413],"is_not":false,"summary":null,"term":"GO:0051447"},{"annotations":[101517,109563],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1905318"},{"annotations":[111089,101815,86885],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0033315"},{"annotations":[76816,109327,101816,111090,84589],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0051598"},{"annotations":[111684],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0033316"},{"annotations":[106309],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0075297"},{"annotations":[77117,70465],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0110031"},{"annotations":[94019],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1902103"},{"annotations":[103153],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0045128"},{"annotations":[108868],"is_not":false,"rel_names":["regulates","positively_regulates"],"summary":null,"term":"GO:1905326"},{"annotations":[96620],"is_not":false,"rel_names":["regulates"],"summary":null,"term":"GO:1905325"}]},"cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the rate or extent of progression through the meiotic cell cycle.","definition_xrefs":["GOC:tb","GOC:dph","GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of cell cycle","termid":"GO:0045786"},{"relation_name":"is_a","term_name":"regulation of meiotic cell cycle","termid":"GO:0051445"},{"relation_name":"is_a","term_name":"negative regulation of reproductive process","termid":"GO:2000242"},{"relation_name":"negatively_regulates","term_name":"meiotic cell cycle","termid":"GO:0051321"}],"gene_count":17,"genes_by_uniquename":{"SJAG_00266":null,"SJAG_00364":null,"SJAG_01082":null,"SJAG_01330":null,"SJAG_01515":null,"SJAG_01680":null,"SJAG_01837":null,"SJAG_02481":null,"SJAG_02771":null,"SJAG_03327":null,"SJAG_03438":null,"SJAG_03529":null,"SJAG_03854":null,"SJAG_04140":null,"SJAG_04259":null,"SJAG_04280":null,"SJAG_04287":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0007049"},{"rel_name":"negatively_regulates","termid":"GO:0007049"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0007049"],"is_obsolete":false,"name":"negative regulation of meiotic cell cycle","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"synonyms":[{"name":"down regulation of progression through meiotic cell cycle","type":"exact"},{"name":"down-regulation of progression through meiotic cell cycle","type":"exact"},{"name":"downregulation of progression through meiotic cell cycle","type":"exact"},{"name":"inhibition of progression through meiotic cell cycle","type":"narrow"},{"name":"negative regulation of meiotic cell cycle progression","type":"exact"},{"name":"negative regulation of progression through meiotic cell cycle","type":"exact"}],"termid":"GO:0051447","terms_by_termid":{"GO:0033315":null,"GO:0033316":null,"GO:0045128":null,"GO:0051447":null,"GO:0051598":null,"GO:0075297":null,"GO:0110031":null,"GO:1902103":null,"GO:1905318":null,"GO:1905325":null,"GO:1905326":null}}


id: PR:Q10329
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- pre6 gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q10329"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"proteasome subunit alpha type-4 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC106.16","synonyms":[{"name":"Spom972h-pre6","type":"exact"}],"termid":"PR:Q10329"}


id: PBO:0028858
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_mRNA_splicing,_via_spliceosome","termid":"PBO:0028858"}


id: RO:0002625
data:
  {"annotation_feature_type":"gene","cv_name":"relationship","direct_ancestors":[{"relation_name":"is_a","term_name":"parasitized_by","termid":"RO:0002445"},{"relation_name":"is_a","term_name":"visited_by","termid":"RO:0002619"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"has_eggs_laid_in_by","termid":"RO:0002625"}


id: PR:O42957
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- ulp1 gene.","definition_xrefs":["PRO:DNx","UniProtKB:O42957"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ubiquitin-like-specific protease 1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC19G7.09","synonyms":[{"name":"Spom972h-ulp1","type":"exact"}],"termid":"PR:O42957"}


id: PBO:0016949
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Schizosaccharomyces specific protein Tam5","termid":"PBO:0016949"}


id: GO:0034443
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of lipoprotein oxidation.","definition_xrefs":["GOC:mah","GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of lipoprotein oxidation","termid":"GO:0034442"},{"relation_name":"is_a","term_name":"negative regulation of lipoprotein metabolic process","termid":"GO:0050748"},{"relation_name":"negatively_regulates","term_name":"lipoprotein oxidation","termid":"GO:0042161"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of lipoprotein oxidation","synonyms":[{"name":"inhibition of lipoprotein oxidation","type":"narrow"}],"termid":"GO:0034443"}


id: PBO:0079333
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"testis-specific transcript, Y-linked 19","termid":"PBO:0079333"}


id: PBO:0088662
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"aspartic protease, yapsin family, unknown specificity Yps1","termid":"PBO:0088662"}


id: PBO:0002252
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nucleolar RNA R62 (predicted)","termid":"PBO:0002252"}


id: GO:0050314
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 1,3-diaminopropane + S-adenosylmethioninamine = S-methyl-5'-thioadenosine + bis(3-aminopropyl)amine + H+.","definition_xrefs":["EC:2.5.1.23","RHEA:23244"],"direct_ancestors":[{"relation_name":"is_a","term_name":"transferase activity, transferring alkyl or aryl (other than methyl) groups","termid":"GO:0016765"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0016765"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016740","GO:0016765","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"sym-norspermidine synthase activity","secondary_identifiers":["MetaCyc:SYM-NORSPERMIDINE-SYNTHASE-RXN","KEGG_REACTION:R03271"],"synonyms":[{"name":"S-adenosylmethioninamine:propane-1,3-diamine 3-aminopropyltransferase activity","type":"related"}],"termid":"GO:0050314"}


id: GO:0009158
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of a ribonucleoside monophosphate, a compound consisting of a nucleobase linked to a ribose sugar esterified with phosphate on the sugar.","definition_xrefs":["GOC:go_curators","ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nucleoside monophosphate catabolic process","termid":"GO:0009125"},{"relation_name":"is_a","term_name":"ribonucleoside monophosphate metabolic process","termid":"GO:0009161"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0044248"},{"rel_name":"is_a","termid":"GO:0055086"}],"interesting_parent_ids":["GO:0008150","GO:0055086","GO:0044248","GO:0044281"],"is_obsolete":false,"name":"ribonucleoside monophosphate catabolic process","synonyms":[{"name":"ribonucleoside monophosphate breakdown","type":"exact"},{"name":"ribonucleoside monophosphate catabolism","type":"exact"},{"name":"ribonucleoside monophosphate degradation","type":"exact"}],"termid":"GO:0009158"}


id: GO:0060295
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the rate frequency or extent of cilium movement involved in ciliary motility.","definition_xrefs":["GOC:dph","GOC:BHF","GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of cilium movement","termid":"GO:0003352"},{"relation_name":"is_a","term_name":"regulation of cilium-dependent cell motility","termid":"GO:1902019"},{"relation_name":"regulates","term_name":"cilium movement involved in cell motility","termid":"GO:0060294"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of cilium movement involved in cell motility","termid":"GO:0060295"}


id: FYPO:0001453
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"An increased chemical resistance phenotype observed in the vegetative growth phase of the life cycle in which cells grow in the presence of a higher concentration of ethanol than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased resistance to chemical during vegetative growth","termid":"FYPO:0000126"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000003"},{"rel_name":"is_a","termid":"FYPO:0000139"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0002682"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000003","FYPO:0005447","FYPO:0002682","FYPO:0000139"],"is_obsolete":false,"name":"resistance to ethanol","synonyms":[{"name":"resistance to ethanol during mitotic cell cycle","type":"related"},{"name":"resistance to ethanol during vegetative growth","type":"exact"},{"name":"resistance to ethyl alcohol","type":"exact"},{"name":"resistant to ethanol","type":"exact"}],"termid":"FYPO:0001453"}


id: PATO:0001192
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A response quality inhering in a bearer by virtue of the bearer's excessive reaction to a stimulus or an agent.","definition_xrefs":["PATOC:GVG"],"direct_ancestors":[{"relation_name":"increased_in_magnitude_relative_to","term_name":"normal","termid":"PATO:0000461"},{"relation_name":"is_a","term_name":"responsive to","termid":"PATO:0000487"},{"relation_name":"is_a","term_name":"increased object quality","termid":"PATO:0002305"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"hyperresponsive to","synonyms":[{"name":"hyperresponsive","type":"exact"},{"name":"increased responsivity","type":"exact"}],"termid":"PATO:0001192"}


id: internal:narrow
data:
  {"annotation_feature_type":"gene","cv_name":"synonym_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"narrow","termid":"internal:narrow"}


id: FYPO:0001630
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of L-isoleucine measured in the vacuole is normal (i.e. indistinguishable from wild type).","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal level of substance in vacuole","termid":"FYPO:0001603"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0001312"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0001312","FYPO:0000002","FYPO:0001320","FYPO:0000257"],"is_obsolete":false,"name":"normal vacuolar isoleucine level","synonyms":[{"name":"normal level of isoleucine in vacuole","type":"exact"},{"name":"normal vacuolar L-isoleucine level","type":"exact"},{"name":"normal vacuolar isoleucine level during mitotic cell cycle","type":"related"},{"name":"normal vacuolar isoleucine level during vegetative growth","type":"exact"}],"termid":"FYPO:0001630"}


id: PBO:0005878
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial DNA binding endonuclease (predicted)","termid":"PBO:0005878"}


id: PBO:0068512
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U1 small nuclear 103, pseudogene","termid":"PBO:0068512"}


id: GO:0090624
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the endonucleolytic cleavage of the mRNA in a double-stranded RNA molecule formed by the base pairing of an mRNA with an miRNA.","definition_xrefs":["GOC:BHF_miRNA","GOC:rph","GOC:BHF","PMID:15260970","PMID:19239888"],"direct_ancestors":[{"relation_name":"is_a","term_name":"RNA endonuclease activity, producing 5'-phosphomonoesters","termid":"GO:0016891"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0140098"},{"rel_name":"is_a","termid":"GO:0016788"},{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016788","GO:0016787","GO:0140098"],"is_obsolete":false,"name":"endoribonuclease activity, cleaving miRNA-paired mRNA","termid":"GO:0090624"}


id: GO:1905508
data:
  {"annotated_genes":["SJAG_06270","SJAG_05220","SJAG_03437","SJAG_02529","SJAG_00883","SJAG_02514","SJAG_03508","SJAG_01371","SJAG_05319","SJAG_05266","SJAG_02731","SJAG_01211","SJAG_01224","SJAG_03376","SJAG_01790","SJAG_00229","SJAG_03915","SJAG_00082","SJAG_00918","SJAG_04468","SJAG_01760","SJAG_01775","SJAG_01805","SJAG_04901","SJAG_04455","SJAG_01546"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[100249,102729,105308,96558,73870,91021],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0061509"},{"annotations":[102422],"is_not":false,"rel_names":["regulates","negatively_regulates"],"summary":null,"term":"GO:1902543"},{"annotations":[89222],"is_not":false,"rel_names":["positively_regulates","regulates"],"summary":null,"term":"GO:0140434"},{"annotations":[110172,109014,86755,92233],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1902441"},{"annotations":[85508],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1902440"},{"annotations":[92137,86457,105036,109169,95805,111922,84671,104048,93954,85252,102689],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1990976"},{"annotations":[101588,96233],"is_not":false,"rel_names":["regulates"],"summary":null,"term":"GO:1902542"}]},"cv_name":"biological_process","definition":"A process in which a protein is transported to, or maintained in, a location within a microtubule organizing center.","definition_xrefs":["GO_REF:0000087","GOC:TermGenie","PMID:19001497"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein localization to microtubule cytoskeleton","termid":"GO:0072698"}],"gene_count":26,"genes_by_uniquename":{"SJAG_00082":null,"SJAG_00229":null,"SJAG_00883":null,"SJAG_00918":null,"SJAG_01211":null,"SJAG_01224":null,"SJAG_01371":null,"SJAG_01546":null,"SJAG_01760":null,"SJAG_01775":null,"SJAG_01790":null,"SJAG_01805":null,"SJAG_02514":null,"SJAG_02529":null,"SJAG_02731":null,"SJAG_03376":null,"SJAG_03437":null,"SJAG_03508":null,"SJAG_03915":null,"SJAG_04455":null,"SJAG_04468":null,"SJAG_04901":null,"SJAG_05220":null,"SJAG_05266":null,"SJAG_05319":null,"SJAG_06270":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0051179","GO:0008150"],"is_obsolete":false,"name":"protein localization to microtubule organizing center","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"synonyms":[{"name":"protein localisation in microtubule organizing center","type":"exact"},{"name":"protein localisation to microtubule organizing center","type":"exact"},{"name":"protein localization in microtubule organizing center","type":"exact"}],"termid":"GO:1905508","terms_by_termid":{"GO:0061509":null,"GO:0140434":null,"GO:1902440":null,"GO:1902441":null,"GO:1902542":null,"GO:1902543":null,"GO:1990976":null}}


id: PBO:0034436
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-inviable_elongated_vegetative_cell_with_mitotic_cell_cycle_arrest_in_interphase_during_cellular_response_to_UV","termid":"PBO:0034436"}


id: PBO:0079927
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"URGCP-MRPS24 readthrough","termid":"PBO:0079927"}


id: MOD:02013
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-lysine residue to N6-linoloyl-L-lysine.","direct_ancestors":[{"relation_name":"is_a","term_name":"N6-acylated L-lysine","termid":"MOD:01875"},{"relation_name":"is_a","term_name":"N-linoloylated residue","termid":"MOD:02014"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:00649"}],"interesting_parent_ids":["MOD:00649"],"is_obsolete":false,"name":"N6-linoloyl-L-lysine","termid":"MOD:02013"}


id: FYPO:0004951
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the number of sites at which the protein Brc1 accumulates is greater than normal.","definition_xrefs":["PomBase:mah","PMID:26368543"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal cellular physical quality phenotype during vegetative growth","termid":"FYPO:0004639"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001320","FYPO:0001985"],"is_obsolete":false,"name":"increased number of Brc1 foci","synonyms":[{"name":"increased number of Brc1 foci during mitotic cell cycle","type":"related"},{"name":"increased number of Brc1 foci during vegetative growth","type":"exact"}],"termid":"FYPO:0004951"}


id: PBO:0017003
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"box H/ACA small nucleolar RNA snR95","termid":"PBO:0017003"}


id: PBO:0029951
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_cell_cycle_arrest_in_mitotic_anaphase,_with_unseparated_sister_chromatids_(obsolete_FYPO:0001947)","termid":"PBO:0029951"}


id: GO:0016935
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A protein complex that forms a transmembrane channel through which chloride ions may pass in response to glycine binding to the channel complex or one of its constituent parts.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"chloride channel complex","termid":"GO:0034707"},{"relation_name":"is_a","term_name":"plasma membrane protein complex","termid":"GO:0098797"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0005886"}],"interesting_parent_ids":["GO:0005886","GO:0005575","GO:0032991"],"is_obsolete":false,"name":"glycine-gated chloride channel complex","termid":"GO:0016935"}


id: PBO:0005859
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Puf family RNA-binding protein Puf6 (predicted)","termid":"PBO:0005859"}


id: PBO:0004300
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ABC1 kinase family ubiquinone biosynthesis protein Abc1/Coq8","termid":"PBO:0004300"}


id: GO:1900532
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Negative regulation of cell proliferation during cellular hyperosmotic response.","definition_xrefs":["GOC:TermGenie"],"gene_count":0,"genotype_count":0,"name":"obsolete negative regulation of cell proliferation involved in cellular hyperosmotic response (obsolete GO:1900532)","synonyms":[{"name":"down regulation of cell proliferation of cellular HOG response","type":"exact"},{"name":"down regulation of cell proliferation of cellular hyperosmotic response","type":"exact"},{"name":"down regulation of cell proliferation of cellular hypertonic response","type":"exact"},{"name":"down regulation of cell proliferation of cellular response to hypertonicity","type":"exact"},{"name":"down-regulation of cell proliferation of cellular HOG response","type":"exact"},{"name":"down-regulation of cell proliferation of cellular hyperosmotic response","type":"exact"},{"name":"down-regulation of cell proliferation of cellular hypertonic response","type":"exact"},{"name":"down-regulation of cell proliferation of cellular response to hypertonicity","type":"exact"},{"name":"downregulation of cell proliferation of cellular HOG response","type":"exact"},{"name":"downregulation of cell proliferation of cellular hyperosmotic response","type":"exact"},{"name":"downregulation of cell proliferation of cellular hypertonic response","type":"exact"},{"name":"downregulation of cell proliferation of cellular response to hypertonicity","type":"exact"},{"name":"inhibition of cell proliferation of cellular HOG response","type":"narrow"},{"name":"inhibition of cell proliferation of cellular hyperosmotic response","type":"narrow"},{"name":"inhibition of cell proliferation of cellular hypertonic response","type":"narrow"},{"name":"inhibition of cell proliferation of cellular response to hypertonicity","type":"narrow"},{"name":"negative regulation of cell proliferation involved in cellular hyperosmotic response","type":"exact"},{"name":"negative regulation of cell proliferation of cellular HOG response","type":"exact"},{"name":"negative regulation of cell proliferation of cellular hyperosmotic response","type":"exact"},{"name":"negative regulation of cell proliferation of cellular hypertonic response","type":"exact"},{"name":"negative regulation of cell proliferation of cellular response to hypertonicity","type":"exact"}],"termid":"GO:1900532"}


id: PBO:0090236
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"meiotic Rho guanine nucleotide exchange factor","termid":"PBO:0090236"}


id: FYPO:0007293
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype in which a spherical vegetative cell lyses, i.e. the plasma membrane ruptures and cytoplasm is lost.","definition_xrefs":["PomBase:mah","PMID:10087262"],"direct_ancestors":[{"relation_name":"has_part","term_name":"vegetative cell lysis","termid":"FYPO:0000647"},{"relation_name":"is_a","term_name":"inviable spherical vegetative cell","termid":"FYPO:0004104"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"has_part","termid":"FYPO:0000004"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000004"},{"rel_name":"has_part","termid":"FYPO:0001985"},{"rel_name":"has_part","termid":"FYPO:0000005"},{"rel_name":"has_part","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000005"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0001320","FYPO:0000002","FYPO:0000004","FYPO:0000005"],"is_obsolete":false,"name":"lysed spherical vegetative cell","synonyms":[{"name":"inviable spherical vegetative cell with cell lysis","type":"exact"}],"termid":"FYPO:0007293"}


id: GO:0010310
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving hydrogen peroxide.","definition_xrefs":["PMID:14765119"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of reactive oxygen species metabolic process","termid":"GO:2000377"},{"relation_name":"regulates","term_name":"hydrogen peroxide metabolic process","termid":"GO:0042743"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of hydrogen peroxide metabolic process","synonyms":[{"name":"regulation of hydrogen peroxide metabolism","type":"exact"}],"termid":"GO:0010310"}


id: PBO:0110496
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein S8 pseudogene 11","termid":"PBO:0110496"}


id: GO:0060875
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The progession of the lateral semicircular canal from its initial formation to the mature structure.","definition_xrefs":["GOC:dph","GOC:sdb_2009","GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"semicircular canal development","termid":"GO:0060872"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"lateral semicircular canal development","termid":"GO:0060875"}


id: PBO:0086571
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Putative protein of unknown function; conserved among S. cerevisiae strains; YPR053C is not an essential gene; partially overlaps verified ORF NHP6A/YPR052C","termid":"PBO:0086571"}


id: FYPO:0001793
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which a cell shows increased resistance to conditions that degrade the cell wall.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"vegetative cell phenotype","termid":"FYPO:0001320"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0000002"],"is_obsolete":false,"name":"resistant to cell wall digestion","synonyms":[{"name":"resistant to cell wall digestion during mitotic cell cycle","type":"related"},{"name":"resistant to cell wall digestion during vegetative growth","type":"exact"}],"termid":"FYPO:0001793"}


id: PBO:0049300
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glutathione S-transferase mu 3","termid":"PBO:0049300"}


id: GO:0019537
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of vibriobactin, the major siderophore produced by Vibrio cholerae.","definition_xrefs":["PMID:11112537","GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"heterocycle biosynthetic process","termid":"GO:0018130"},{"relation_name":"is_a","term_name":"aromatic compound biosynthetic process","termid":"GO:0019438"},{"relation_name":"is_a","term_name":"vibriobactin metabolic process","termid":"GO:0019536"},{"relation_name":"is_a","term_name":"amide biosynthetic process","termid":"GO:0043604"},{"relation_name":"is_a","term_name":"organic cyclic compound biosynthetic process","termid":"GO:1901362"},{"relation_name":"is_a","term_name":"organonitrogen compound biosynthetic process","termid":"GO:1901566"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0019748"}],"interesting_parent_ids":["GO:0019748","GO:0008150"],"is_obsolete":false,"name":"vibriobactin biosynthetic process","secondary_identifiers":["GO:0031195","GO:0031196"],"synonyms":[{"name":"vibriobactin anabolism","type":"exact"},{"name":"vibriobactin biosynthesis","type":"exact"},{"name":"vibriobactin biosynthetic process, peptide formation","type":"narrow"},{"name":"vibriobactin biosynthetic process, peptide modification","type":"narrow"},{"name":"vibriobactin formation","type":"exact"},{"name":"vibriobactin synthesis","type":"exact"}],"termid":"GO:0019537"}


id: PBO:0057740
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 1470","termid":"PBO:0057740"}


id: GO:0034804
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: benzo(a)pyrene + O2 = benzo(a)pyrene-11,12-epoxide.","definition_xrefs":["UM-BBD_reactionID:r1119"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen","termid":"GO:0016705"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016491"],"is_obsolete":false,"name":"benzo(a)pyrene 11,12-epoxidase activity","termid":"GO:0034804"}


id: GO:1900328
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of mannotriose transport.","definition_xrefs":["GOC:TermGenie","GOC:mengo_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of transport","termid":"GO:0051051"},{"relation_name":"is_a","term_name":"regulation of mannotriose transport","termid":"GO:1900327"},{"relation_name":"negatively_regulates","term_name":"mannotriose transport","termid":"GO:2001095"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"negatively_regulates","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0006810","GO:0008150"],"is_obsolete":false,"name":"negative regulation of mannotriose transport","synonyms":[{"name":"down regulation of mannotriose transport","type":"exact"},{"name":"down-regulation of mannotriose transport","type":"exact"},{"name":"downregulation of mannotriose transport","type":"exact"},{"name":"inhibition of mannotriose transport","type":"narrow"}],"termid":"GO:1900328"}


id: GO:0102045
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 3-chlorobenzoate + O2 + a reduced electron acceptor = 3-chlorobenzoate-cis-3,4-diol + an oxidized electron acceptor.","definition_xrefs":["GOC:pz","PMID:8285670"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of two atoms of oxygen into one donor","termid":"GO:0016708"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0016491","GO:0003824"],"is_obsolete":false,"name":"3-chlorobenzoate-3,4-oxygenase activity","secondary_identifiers":["MetaCyc:RXN-10422"],"termid":"GO:0102045"}


id: PBO:0071142
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L22 pseudogene 5","termid":"PBO:0071142"}


id: PBO:0071387
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L30 pseudogene 10","termid":"PBO:0071387"}


id: PBO:0029766
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_protein_localization_to_double-strand_break_site","termid":"PBO:0029766"}


id: PBO:0074978
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nucleolar RNA, C/D box 114-20","termid":"PBO:0074978"}


id: GO:2000331
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of terminal button organization.","definition_xrefs":["GOC:BHF","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of presynapse organization","termid":"GO:0099174"},{"relation_name":"regulates","term_name":"terminal button organization","termid":"GO:0072553"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of terminal button organization","synonyms":[{"name":"regulation of bouton organization","type":"exact"},{"name":"regulation of presynaptic bouton organization","type":"exact"},{"name":"regulation of synaptic bouton organization","type":"exact"},{"name":"regulation of terminal bouton organization","type":"exact"},{"name":"regulation of terminal button organisation","type":"exact"}],"termid":"GO:2000331"}


id: PBO:0068228
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 5S ribosomal pseudogene 535","termid":"PBO:0068228"}


id: PBO:0091025
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"plasma membrane pantothenate transmembrane transporter Liz1","termid":"PBO:0091025"}


id: PBO:0047452
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"FCH and mu domain containing endocytic adaptor 2","termid":"PBO:0047452"}


id: PBO:0054109
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1474","termid":"PBO:0054109"}


id: PBO:0051374
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"immunoglobulin kappa variable 3/OR2-5 (pseudogene)","termid":"PBO:0051374"}


id: PBO:0050727
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"heat shock protein family D (Hsp60) member 1 pseudogene 13","termid":"PBO:0050727"}


id: PBO:0030821
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_sodium_export","termid":"PBO:0030821"}


id: GO:0140622
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"Lipid transfer complex that is responsible for the non-vesicular transport of phospholipids, such as phosphatidylserine, from the endoplasmic reticulum to the endosome. It resides in the endosomal (acceptor) membrane and binds to specific lipids on the donor membrane at the ER-endosome contact site.","definition_xrefs":["PMID:20016005","PMID:24366873","GOC:lnp"],"direct_ancestors":[{"relation_name":"is_a","term_name":"membrane protein complex","termid":"GO:0098796"},{"relation_name":"part_of","term_name":"endosome membrane","termid":"GO:0010008"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005768"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0031410"}],"interesting_parent_ids":["GO:0005575","GO:0005768","GO:0032991","GO:0031410","GO:0005737"],"is_obsolete":false,"name":"ER-to-endosome phospholipid transfer complex","termid":"GO:0140622"}


id: PBO:0030532
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_nuclear_morphology","termid":"PBO:0030532"}


id: PBO:0044310
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cytochrome b5 reductase like","termid":"PBO:0044310"}


id: PBO:0065013
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PRDM16 divergent transcript","termid":"PBO:0065013"}


id: GO:0010445
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A small round nuclear body, measuring 0.2-0.8 microns in diameter that is diffusely distributed throughout the nucleoplasm. Several proteins known to be involved in miRNA processing have been localized to these structures. D-bodies are thought to be involved in primary-miRNA processing and/or storage/assembly of miRNA processing complexes.","definition_xrefs":["PMID:17442570"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nuclear body","termid":"GO:0016604"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005654"},{"rel_name":"part_of","termid":"GO:0005634"}],"interesting_parent_ids":["GO:0005575","GO:0005654","GO:0005634"],"is_obsolete":false,"name":"nuclear dicing body","synonyms":[{"name":"D body","type":"exact"}],"termid":"GO:0010445"}


id: GO:1902041
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of extrinsic apoptotic signaling pathway via death domain receptors.","definition_xrefs":["GOC:TermGenie","PMID:17245429"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of extrinsic apoptotic signaling pathway","termid":"GO:2001236"},{"relation_name":"regulates","term_name":"extrinsic apoptotic signaling pathway via death domain receptors","termid":"GO:0008625"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"regulation of extrinsic apoptotic signaling pathway via death domain receptors","synonyms":[{"name":"regulation of death receptor-mediated apoptosis","type":"narrow"}],"termid":"GO:1902041"}


id: PBO:0075258
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sorting nexin 18 pseudogene 11","termid":"PBO:0075258"}


id: GO:0006458
data:
  {"annotated_genes":["SJAG_01641","SJAG_04784","SJAG_03094","SJAG_00750","SJAG_03267","SJAG_05206","SJAG_01664","SJAG_04741","SJAG_00112","SJAG_01510","SJAG_03237","SJAG_02461","SJAG_01733","SJAG_05189"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[77259,84824,90989],"is_not":false,"summary":null,"term":"GO:0006458"},{"annotations":[78355,93253,102484,83058,92908,112621,112719,93892,98972,95994,99918],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0051083"}]},"cv_name":"biological_process","definition":"The process of assisting in the folding of a nascent peptide chain into its correct tertiary structure.","definition_xrefs":["GOC:mb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein folding","termid":"GO:0006457"}],"gene_count":14,"genes_by_uniquename":{"SJAG_00112":null,"SJAG_00750":null,"SJAG_01510":null,"SJAG_01641":null,"SJAG_01664":null,"SJAG_01733":null,"SJAG_02461":null,"SJAG_03094":null,"SJAG_03237":null,"SJAG_03267":null,"SJAG_04741":null,"SJAG_04784":null,"SJAG_05189":null,"SJAG_05206":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006457"},{"rel_name":"part_of","termid":"GO:0051604"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0008150","GO:0006457","GO:0051604","GO:0010467"],"is_obsolete":false,"name":"'de novo' protein folding","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"synonyms":[{"name":"nascent chain protein folding","type":"exact"}],"termid":"GO:0006458","terms_by_termid":{"GO:0006458":null,"GO:0051083":null}}


id: PBO:0055280
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2707","termid":"PBO:0055280"}


id: PBO:0075532
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"speedy/RINGO cell cycle regulator family member E12","termid":"PBO:0075532"}


id: PBO:0048477
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glucosaminyl (N-acetyl) transferase 1 pseudogene 4","termid":"PBO:0048477"}


id: PBO:0042158
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"C-C motif chemokine ligand 19","termid":"PBO:0042158"}


id: GO:2000434
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of protein neddylation.","definition_xrefs":["GOC:obol"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of protein modification by small protein conjugation or removal","termid":"GO:1903320"},{"relation_name":"regulates","term_name":"protein neddylation","termid":"GO:0045116"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0070647"}],"interesting_parent_ids":["GO:0070647","GO:0008150"],"is_obsolete":false,"name":"regulation of protein neddylation","synonyms":[{"name":"regulation of RUB1-protein conjugation","type":"exact"}],"termid":"GO:2000434"}


id: PBO:0016074
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"rhomboid family protease (predicted)","termid":"PBO:0016074"}


id: GO:0002711
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate, or extent of T cell mediated immunity.","definition_xrefs":["GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of lymphocyte mediated immunity","termid":"GO:0002708"},{"relation_name":"is_a","term_name":"regulation of T cell mediated immunity","termid":"GO:0002709"},{"relation_name":"is_a","term_name":"positive regulation of adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains","termid":"GO:0002824"},{"relation_name":"positively_regulates","term_name":"T cell mediated immunity","termid":"GO:0002456"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of T cell mediated immunity","synonyms":[{"name":"up-regulation of T cell mediated immunity","type":"exact"},{"name":"activation of T cell mediated immunity","type":"narrow"},{"name":"positive regulation of T lymphocyte mediated immunity","type":"exact"},{"name":"positive regulation of T-cell mediated immunity","type":"exact"},{"name":"positive regulation of T-lymphocyte mediated immunity","type":"exact"},{"name":"stimulation of T cell mediated immunity","type":"narrow"},{"name":"up regulation of T cell mediated immunity","type":"exact"},{"name":"upregulation of T cell mediated immunity","type":"exact"}],"termid":"GO:0002711"}


id: PATO:0000509
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0000509 stress sensitivity value (obsolete PATO:0000509)","termid":"PATO:0000509"}


id: GO:0071676
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that decreases the rate, frequency or extent of mononuclear cell migration. Mononuclear cell migration is the movement of a mononuclear cell within or between different tissues and organs of the body.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of leukocyte migration","termid":"GO:0002686"},{"relation_name":"is_a","term_name":"regulation of mononuclear cell migration","termid":"GO:0071675"},{"relation_name":"negatively_regulates","term_name":"mononuclear cell migration","termid":"GO:0071674"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of mononuclear cell migration","synonyms":[{"name":"down regulation of mononuclear cell migration","type":"exact"},{"name":"down-regulation of mononuclear cell migration","type":"exact"},{"name":"downregulation of mononuclear cell migration","type":"exact"},{"name":"inhibition of mononuclear cell migration","type":"narrow"}],"termid":"GO:0071676"}


id: PBO:0076631
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TBL1X/Y related 1","termid":"PBO:0076631"}


id: PBO:0036339
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"claspin, Mrc1","termid":"PBO:0036339"}


id: GO:0034744
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A protein complex that contains the tumor suppressor protein adenomatous polyposis coli (APC), the small GTPase Cdc42, and the Rac1 and Cdc42 effector IQGAP1; may play a role in cytoskeleton organization and cell migration.","definition_xrefs":["PMID:15572129"],"direct_ancestors":[{"relation_name":"is_a","term_name":"intracellular protein-containing complex","termid":"GO:0140535"},{"relation_name":"is_a","term_name":"GTPase complex","termid":"GO:1905360"},{"relation_name":"part_of","term_name":"cell leading edge","termid":"GO:0031252"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0032991","GO:0005575"],"is_obsolete":false,"name":"APC-IQGAP1-Cdc42 complex","termid":"GO:0034744"}


id: PBO:0016912
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protein kinase, RIO family Rio1 (predicted)","termid":"PBO:0016912"}


id: GO:0019495
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of proline into other compounds, including 2-oxoglutarate.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"2-oxoglutarate metabolic process","termid":"GO:0006103"},{"relation_name":"is_a","term_name":"proline catabolic process","termid":"GO:0006562"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0006520"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044248"}],"interesting_parent_ids":["GO:0044248","GO:0008150","GO:0044281","GO:0006520"],"is_obsolete":false,"name":"proline catabolic process to 2-oxoglutarate","synonyms":[{"name":"proline breakdown to 2-oxoglutarate","type":"exact"},{"name":"proline catabolic process to 2-ketoglutarate","type":"exact"},{"name":"proline catabolic process to alpha-ketoglutarate","type":"exact"},{"name":"proline catabolic process to alpha-oxoglutarate","type":"exact"},{"name":"proline catabolism to 2-ketoglutarate","type":"exact"},{"name":"proline catabolism to alpha-ketoglutarate","type":"exact"},{"name":"proline catabolism to alpha-oxoglutarate","type":"exact"},{"name":"proline degradation to 2-oxoglutarate","type":"exact"}],"termid":"GO:0019495"}


id: GO:0005021
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Combining with a vascular endothelial growth factor (VEGF) receptor ligand and transmitting the signal across the plasma membrane to initiate a change in cell activity.","definition_xrefs":["GOC:signaling","GOC:mah","PMID:19909239"],"direct_ancestors":[{"relation_name":"is_a","term_name":"transmembrane receptor protein tyrosine kinase activity","termid":"GO:0004714"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016301"},{"rel_name":"is_a","termid":"GO:0038023"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0140096"},{"rel_name":"is_a","termid":"GO:0004672"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016301","GO:0140096","GO:0003824","GO:0003674","GO:0004672","GO:0038023","GO:0016740"],"is_obsolete":false,"name":"vascular endothelial growth factor receptor activity","secondary_identifiers":["GO:0036327","GO:0036330","GO:0036326","GO:0036328","GO:0036329"],"synonyms":[{"name":"VEGF receptor activity","type":"exact"},{"name":"VEGF-A-activated receptor activity","type":"narrow"},{"name":"VEGF-B-activated receptor activity","type":"narrow"},{"name":"VEGF-C-activated receptor activity","type":"narrow"},{"name":"VEGF-D-activated receptor activity","type":"narrow"},{"name":"VEGF-E-activated receptor activity","type":"narrow"},{"name":"VEGF-activated receptor activity","type":"exact"},{"name":"VEGFR activity","type":"exact"},{"name":"vascular endothelial growth factor E-activated receptor activity","type":"exact"},{"name":"vascular endothelial growth factor-activated receptor activity","type":"exact"}],"termid":"GO:0005021"}


id: GO:0072237
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of the metanephric proximal tubule over time, from its formation to the mature structure. The metanephric proximal tubule is a metanephric nephron tubule that connects Bowman's capsule to the descending thin limb of the loop of Henle in the metanephros. It has a brush border epithelial morphology.","definition_xrefs":["GOC:mtg_kidney_jan10"],"direct_ancestors":[{"relation_name":"is_a","term_name":"proximal tubule development","termid":"GO:0072014"},{"relation_name":"is_a","term_name":"metanephric nephron tubule development","termid":"GO:0072234"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"metanephric proximal tubule development","termid":"GO:0072237"}


id: PATO:0001787
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A curvature quality inhering in a bearer by virtue of the bearer's being curved around an axis.","definition_xrefs":["PATOC:GVG"],"direct_ancestors":[{"relation_name":"is_a","term_name":"curvature","termid":"PATO:0001591"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"rotational curvature","termid":"PATO:0001787"}


id: PBO:0003035
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pseudogene transporter","termid":"PBO:0003035"}


id: PBO:0054815
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2228","termid":"PBO:0054815"}


id: PBO:0025474
data:
  {"annotation_feature_type":"gene","cv_name":"disease_associated","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"amino acid transport disorders","termid":"PBO:0025474"}


id: GO:1900298
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of hexasaccharide transport.","definition_xrefs":["GOC:mengo_curators","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of transport","termid":"GO:0051051"},{"relation_name":"is_a","term_name":"regulation of hexasaccharide transport","termid":"GO:1900297"},{"relation_name":"negatively_regulates","term_name":"hexasaccharide transport","termid":"GO:2001102"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"negatively_regulates","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0006810","GO:0008150"],"is_obsolete":false,"name":"negative regulation of hexasaccharide transport","synonyms":[{"name":"down regulation of hexasaccharide transport","type":"exact"},{"name":"down-regulation of hexasaccharide transport","type":"exact"},{"name":"downregulation of hexasaccharide transport","type":"exact"},{"name":"inhibition of hexasaccharide transport","type":"narrow"}],"termid":"GO:1900298"}


id: GO:0047463
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: L-2-aminohexano-6-lactam = D-2-aminohexano-6-lactam.","definition_xrefs":["EC:5.1.1.15","RHEA:14813"],"direct_ancestors":[{"relation_name":"is_a","term_name":"racemase and epimerase activity, acting on amino acids and derivatives","termid":"GO:0016855"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016853"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003824","GO:0016853","GO:0003674"],"is_obsolete":false,"name":"2-aminohexano-6-lactam racemase activity","secondary_identifiers":["KEGG_REACTION:R04736","MetaCyc:5.1.1.15-RXN"],"synonyms":[{"name":"2-amino-hexano-6-lactam racemase activity","type":"related"},{"name":"alpha-amino-epsilon-caprolactam racemase activity","type":"related"}],"termid":"GO:0047463"}


id: PBO:0086057
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein of unknown function that associates with ribosomes; green fluorescent protein (GFP)-fusion protein localizes to the cell periphery and bud; not an essential gene; protein abundance increases in response to DNA replication stress; YMR295C has a paralog, YGR273C, that arose from the whole genome duplication","termid":"PBO:0086057"}


id: PBO:0082638
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Component of glutamine amidotransferase (GATase II); forms a complex with Dug2p to degrade glutathione (GSH) and other peptides containing a gamma-glu-X bond in an alternative pathway to GSH degradation by gamma-glutamyl transpeptidase (Ecm38p)","termid":"PBO:0082638"}


id: PBO:0056876
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MHC class I polypeptide-related sequence F (pseudogene)","termid":"PBO:0056876"}


id: PBO:0047715
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"flavin containing dimethylaniline monoxygenase 6, pseudogene","termid":"PBO:0047715"}


id: PBO:0070562
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L7a pseudogene 28","termid":"PBO:0070562"}


id: PBO:0016099
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA-binding protein involved in ribosome biogenesis Nip7 (predicted)","termid":"PBO:0016099"}


id: PBO:0065510
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"phosphoseryl-tRNA kinase","termid":"PBO:0065510"}


id: PBO:0065438
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"proteasome 26S subunit, ATPase 1 pseudogene 11","termid":"PBO:0065438"}


id: GO:0042426
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of choline (2-hydroxyethyltrimethylammonium), an amino alcohol that occurs widely in living organisms as a constituent of certain types of phospholipids and in the neurotransmitter acetylcholine.","definition_xrefs":["ISBN:0192801023","GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"choline metabolic process","termid":"GO:0019695"},{"relation_name":"is_a","term_name":"cellular biogenic amine catabolic process","termid":"GO:0042402"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"choline catabolic process","synonyms":[{"name":"choline breakdown","type":"exact"},{"name":"choline catabolism","type":"exact"},{"name":"choline degradation","type":"exact"}],"termid":"GO:0042426"}


id: PR:Q9USY0
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- mug131 gene.","definition_xrefs":["UniProtKB:Q9USY0","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"meiotically up-regulated gene 131 protein (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC1861.06c","synonyms":[{"name":"Spom972h-mug131","type":"exact"}],"termid":"PR:Q9USY0"}


id: MOD:01064
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"modification from DeltaMass","definition_xrefs":["DeltaMass:0"],"direct_ancestors":[{"relation_name":"is_a","term_name":"DeltaMass","termid":"MOD:00947"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"inositol","termid":"MOD:01064"}


id: PBO:0054457
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1854","termid":"PBO:0054457"}


id: PBO:0061180
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nuclear-encoded mitochondrial tRNA-Gln (TTG) 10-1","termid":"PBO:0061180"}


id: GO:0015613
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. (Was not defined before being made obsolete).","definition_xrefs":["GOC:ai"],"gene_count":0,"genotype_count":0,"name":"obsolete galactose/glucose (methylgalactoside) porter activity (obsolete GO:0015613)","synonyms":[{"name":"galactose/glucose (methylgalactoside) porter activity","type":"exact"}],"termid":"GO:0015613"}


id: GO:0004805
data:
  {"annotated_genes":["SJAG_00182","SJAG_01531","SJAG_01646","SJAG_01862","SJAG_01427","SJAG_00129"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[73287,73750,74976,77554,77809,78396],"is_not":false,"summary":null,"term":"GO:0004805"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: alpha,alpha-trehalose 6-phosphate + H2O = alpha,alpha-trehalose + phosphate.","definition_xrefs":["EC:3.1.3.12","RHEA:23420"],"direct_ancestors":[{"relation_name":"is_a","term_name":"sugar-phosphatase activity","termid":"GO:0050308"}],"gene_count":6,"genes_by_uniquename":{"SJAG_00129":null,"SJAG_00182":null,"SJAG_01427":null,"SJAG_01531":null,"SJAG_01646":null,"SJAG_01862":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016788"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016787"}],"interesting_parent_ids":["GO:0016787","GO:0016788","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"trehalose-phosphatase activity","references_by_uniquename":{"GO_REF:0000033":null},"secondary_identifiers":["MetaCyc:TREHALOSEPHOSPHA-RXN"],"synonyms":[{"name":"trehalose 6-phosphatase activity","type":"related"},{"name":"trehalose 6-phosphate phosphatase activity","type":"related"},{"name":"trehalose phosphatase activity","type":"exact"},{"name":"trehalose-6-phosphate phosphohydrolase activity","type":"related"}],"termid":"GO:0004805","terms_by_termid":{"GO:0004805":null}}


id: GO:1990831
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a carcinoembryonic antigen stimulus. The carcinoembryonic antigens represent a family of glycoproteins.","definition_xrefs":["PMID:10202129","PMID:14597422"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular response to glycoprotein","termid":"GO:1904588"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cellular response to carcinoembryonic antigen","synonyms":[{"name":"cellular response to pregnancy specific glycoprotein","type":"exact"}],"termid":"GO:1990831"}


id: MOD:00246
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively crosslinks an L-cysteine residue and a glycine residue to form glycine thiazole-4-carboxylic acid.","definition_xrefs":["RESID:AA0241","PubMed:8183941","PubMed:8895467","ChEBI:21276"],"direct_ancestors":[{"relation_name":"is_a","term_name":"thiazole/thiazoline ring crosslinked residues","termid":"MOD:01420"},{"relation_name":"is_a","term_name":"didehydrogenated residue","termid":"MOD:01888"},{"relation_name":"is_a","term_name":"crosslinked glycine residue","termid":"MOD:02047"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glycine thiazole-4-carboxylic acid","synonyms":[{"name":"2-(aminomethyl)-1,3-thiazole-4-carboxylic acid","type":"exact"},{"name":"2-(azanylmethyl)-1,3-thiazole-4-carboxylic acid","type":"exact"},{"name":"CROSSLNK Thiazole-4-carboxylic acid (Gly-Cys)","type":"exact"},{"name":"glycine thiazole-4-carboxylic acid","type":"exact"}],"termid":"MOD:00246"}


id: PBO:0085684
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein involved in proteolytic activation of Rim101p; part of response to alkaline pH; PalA/AIP1/Alix family member; interaction with the ESCRT-III subunit Snf7p suggests a relationship between pH response and multivesicular body formation","termid":"PBO:0085684"}


id: PR:000050570
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A septation initiation network scaffold protein cdc11 (Schizosaccharomyces pombe) that includes phosphorylated residues at a level greater than the interphase-observed phosphorylated form, and is only observed during mitotic anaphase.","definition_xrefs":["PRO:DAN","PomBase:VW","PMID:12546793"],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cdc11/HyperPhos","pombase_gene_id":"SPCC1739.11c","synonyms":[{"name":"Spom-cdc11/HyperPhos+","type":"exact"},{"name":"cdc11/HyperPhos","type":"exact"},{"name":"cdc11p hyperphosphorylated form (3) (Schizosaccharomyces pombe)","type":"related"}],"termid":"PR:000050570"}


id: PBO:0054090
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1443","termid":"PBO:0054090"}


id: FYPO:0005104
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which the observed rate of Lys63-specific deubiquitinase activity is abnormal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal ubiquitinyl hydrolase activity","termid":"FYPO:0003111"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000707"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0000654"},{"rel_name":"is_a","termid":"FYPO:0000661"}],"interesting_parent_ids":["FYPO:0000654","FYPO:0000661","FYPO:0001985","FYPO:0000652","FYPO:0000707"],"is_obsolete":false,"name":"abnormal Lys63-specific deubiquitinase activity","termid":"FYPO:0005104"}


id: PBO:0068442
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U1 small nuclear 16, pseudogene","termid":"PBO:0068442"}


id: PBO:0049653
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"H4 clustered histone 7","termid":"PBO:0049653"}


id: PR:Q9UT52
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- mod21 gene.","definition_xrefs":["UniProtKB:Q9UT52","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"gamma-tubulin complex subunit mod21 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC806.08c","synonyms":[{"name":"Spom972h-mod21","type":"exact"}],"termid":"PR:Q9UT52"}


id: GO:0008275
data:
  {"annotated_genes":["SJAG_03835","SJAG_01215","SJAG_02609","SJAG_07018"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[96269,104004,104751,105703],"is_not":false,"summary":null,"term":"GO:0008275"}]},"cv_name":"cellular_component","definition":"A complex usually comprising two gamma-tubulin molecules and two conserved non-tubulin proteins. Some gamma-tubulin small complexes are thought to be the repeating unit making up the core of the gamma-tubulin ring complex.","definition_xrefs":["PMID:12134075","PMID:11297925"],"direct_ancestors":[{"relation_name":"is_a","term_name":"gamma-tubulin complex","termid":"GO:0000930"}],"gene_count":4,"genes_by_uniquename":{"SJAG_01215":null,"SJAG_02609":null,"SJAG_03835":null,"SJAG_07018":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0015630"}],"interesting_parent_ids":["GO:0005575","GO:0015630","GO:0032991"],"is_obsolete":false,"name":"gamma-tubulin small complex","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["GO:0000927","GO:0000928","GO:0061495"],"synonyms":[{"name":"Tub4 complex","type":"narrow"},{"name":"gamma-tubulin small complex, centrosomal","type":"narrow"},{"name":"gamma-tubulin small complex, mitotic spindle pole body","type":"narrow"},{"name":"gamma-tubulin small complex, spindle pole body","type":"narrow"},{"name":"gammaTuSC","type":"exact"}],"termid":"GO:0008275","terms_by_termid":{"GO:0008275":null}}


id: PBO:0062097
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 4 subfamily A member 47","termid":"PBO:0062097"}


id: GO:0018984
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving naphthalenesulfonate, sulfonated derivatives of naphthalene.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"organic acid metabolic process","termid":"GO:0006082"},{"relation_name":"is_a","term_name":"sulfur compound metabolic process","termid":"GO:0006790"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0006790"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0044281","GO:0008150","GO:0006790"],"is_obsolete":false,"name":"naphthalenesulfonate metabolic process","secondary_identifiers":["GO:0018932","UM-BBD_pathwayID:nphs"],"synonyms":[{"name":"naphthalenesulfonate metabolism","type":"exact"},{"name":"naphthalenesulphonate metabolic process","type":"exact"},{"name":"naphthalenesulphonate metabolism","type":"exact"}],"termid":"GO:0018984"}


id: GO:0043135
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 5-phospho-alpha-D-ribose 1-diphosphate + H2O = ribose 1,5 bisphosphate + phosphate + H+.","definition_xrefs":["PMID:12370170","MetaCyc:RXN-10969"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pyrophosphatase activity","termid":"GO:0016462"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016787"}],"interesting_parent_ids":["GO:0016787","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"5-phosphoribosyl 1-pyrophosphate pyrophosphatase activity","synonyms":[{"name":"PRPP pyrophosphatase activity","type":"exact"}],"termid":"GO:0043135"}


id: FYPO:0003771
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to the plasma membrane surrounding the cell tip is decreased.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased protein localization to cell tip during vegetative growth","termid":"FYPO:0001586"},{"relation_name":"is_a","term_name":"abnormal protein localization to plasma membrane during vegetative growth","termid":"FYPO:0002125"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0000138","FYPO:0001320","FYPO:0005447","FYPO:0001985"],"is_obsolete":false,"name":"decreased protein localization to plasma membrane of cell tip during vegetative growth","synonyms":[{"name":"decreased protein localisation to plasma membrane of cell tip during vegetative growth","type":"exact"},{"name":"decreased protein localization in plasma membrane of cell tip during vegetative growth","type":"exact"},{"name":"decreased protein localization to plasma membrane of cell end during vegetative growth","type":"exact"},{"name":"decreased protein localization to plasma membrane of cell tip during mitotic cell cycle","type":"related"},{"name":"reduced protein localization to plasma membrane of cell tip during vegetative growth","type":"exact"}],"termid":"FYPO:0003771"}


id: GO:0048752
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which the anatomical structures of the semicircular canals are generated and organized.","definition_xrefs":["GOC:dph","GOC:dgh","GOC:jid"],"direct_ancestors":[{"relation_name":"is_a","term_name":"tube morphogenesis","termid":"GO:0035239"},{"relation_name":"is_a","term_name":"embryonic morphogenesis","termid":"GO:0048598"},{"relation_name":"part_of","term_name":"inner ear morphogenesis","termid":"GO:0042472"},{"relation_name":"part_of","term_name":"semicircular canal development","termid":"GO:0060872"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"semicircular canal morphogenesis","synonyms":[{"name":"embryonic semicircular canal morphogenesis","type":"exact"}],"termid":"GO:0048752"}


id: PBO:0003152
data:
  {"annotation_feature_type":"gene","cv_name":"EC numbers","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"2.5.1.46","termid":"PBO:0003152"}


id: PBO:0067701
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 5.8S ribosomal pseudogene 9","termid":"PBO:0067701"}


id: PBO:0049043
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"G protein-coupled receptor 34","termid":"PBO:0049043"}


id: PBO:0054352
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1745","termid":"PBO:0054352"}


id: PBO:0084122
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"hEST1A/B (SMG5/6)-like protein; contributes to environment-sensing adaptive gene expression responses; Esl1p and Esl2p contain a 14-3-3-like domain and a putative PilT N-terminus ribonuclease domain; ESL1 has a paralog, ESL2, that arose from the whole genome duplication","termid":"PBO:0084122"}


id: RO:0002223
data:
  {"annotation_feature_type":"gene","cv_name":"relationship","definition":"inverse of starts with","direct_ancestors":[{"relation_name":"is_a","term_name":"part_of","termid":"BFO:0000050"},{"relation_name":"is_a","term_name":"temporally_related_to","termid":"RO:0002222"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"starts","termid":"RO:0002223"}


id: GO:1990680
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a melanocyte-stimulating hormone stimulus. The binding of any one of three melanocyte-stimulating hormones causes dispersal of melanosomes in melanophores of poikilothermic vertebrates.","definition_xrefs":["PMID:17036007"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to peptide hormone","termid":"GO:0043434"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"response to melanocyte-stimulating hormone","synonyms":[{"name":"response to MSH","type":"exact"}],"termid":"GO:1990680"}


id: GO:0038167
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. An epidermal growth factor receptor signaling pathway in which the signal transmitted via the activation of the transcription factor NF-kappaB.","definition_xrefs":["PMID:22132240","GOC:uh","GOC:signaling","PMID:21229383","PMID:21518868"],"gene_count":0,"genotype_count":0,"name":"obsolete epidermal growth factor receptor signaling pathway via positive regulation of NF-kappaB transcription factor activity (obsolete GO:0038167)","synonyms":[{"name":"EGFR signaling pathway via activation of NF-kappaB","type":"exact"},{"name":"epidermal growth factor receptor signalling pathway via positive regulation of NF-kappaB transcription factor activity","type":"exact"}],"termid":"GO:0038167"}


id: PBO:0061470
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nuclear receptor binding factor 2 pseudogene 5","termid":"PBO:0061470"}


id: GO:1902856
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of non-motile cilium assembly.","definition_xrefs":["PMID:23807208","GOC:TermGenie","GOC:cilia","GOC:kmv","GO_REF:0000058"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of cilium assembly","termid":"GO:1902018"},{"relation_name":"is_a","term_name":"regulation of non-motile cilium assembly","termid":"GO:1902855"},{"relation_name":"negatively_regulates","term_name":"non-motile cilium assembly","termid":"GO:1905515"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0044085"}],"interesting_parent_ids":["GO:0044085","GO:0008150"],"is_obsolete":false,"name":"negative regulation of non-motile cilium assembly","synonyms":[{"name":"down regulation of immotile primary cilium assembly","type":"related"},{"name":"down regulation of nonmotile primary cilia assembly","type":"related"},{"name":"down regulation of nonmotile primary cilium assembly","type":"related"},{"name":"down regulation of sensory cilium assembly","type":"related"},{"name":"down regulation of sensory cilium biogenesis","type":"related"},{"name":"down-regulation of immotile primary cilium assembly","type":"related"},{"name":"down-regulation of nonmotile primary cilia assembly","type":"related"},{"name":"down-regulation of nonmotile primary cilium assembly","type":"related"},{"name":"down-regulation of sensory cilium assembly","type":"related"},{"name":"down-regulation of sensory cilium biogenesis","type":"related"},{"name":"downregulation of immotile primary cilium assembly","type":"related"},{"name":"downregulation of nonmotile primary cilia assembly","type":"related"},{"name":"downregulation of nonmotile primary cilium assembly","type":"related"},{"name":"downregulation of sensory cilium assembly","type":"related"},{"name":"downregulation of sensory cilium biogenesis","type":"related"},{"name":"inhibition of immotile primary cilium assembly","type":"narrow"},{"name":"inhibition of nonmotile primary cilia assembly","type":"related"},{"name":"inhibition of nonmotile primary cilium assembly","type":"narrow"},{"name":"inhibition of sensory cilium assembly","type":"narrow"},{"name":"inhibition of sensory cilium biogenesis","type":"related"},{"name":"negative regulation of immotile primary cilium assembly","type":"related"},{"name":"negative regulation of nonmotile primary cilia assembly","type":"related"},{"name":"negative regulation of nonmotile primary cilium assembly","type":"related"},{"name":"negative regulation of sensory cilium assembly","type":"related"},{"name":"negative regulation of sensory cilium biogenesis","type":"related"}],"termid":"GO:1902856"}


id: PBO:0042757
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CEP19 pseudogene 1","termid":"PBO:0042757"}


id: PBO:0027151
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_vacuolar_proline_level","termid":"PBO:0027151"}


id: PBO:0085244
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Peptidyl-prolyl cis-trans isomerase (cyclophilin) of the ER; catalyzes the cis-trans isomerization of peptide bonds N-terminal to proline residues; transcriptionally induced in response to unfolded proteins in the ER; CPR5 has a paralog, CPR2, that arose from the whole genome duplication","termid":"PBO:0085244"}


id: GO:0160114
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The structure which joins the B1 protofilament of the B tubule to the A10 and A11 protofilaments of the A tubule within an axonemal microtubule doublet.","definition_xrefs":["PMID:37295417","GOC:krc","PMID:29430673"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular anatomical entity","termid":"GO:0110165"},{"relation_name":"part_of","term_name":"axonemal outer doublet","termid":"GO:0097545"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005737"}],"interesting_parent_ids":["GO:0005575","GO:0005737"],"is_obsolete":false,"name":"axonemal microtubule doublet outer junction","termid":"GO:0160114"}


id: GO:0099177
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of trans-synaptic signaling.","definition_xrefs":["GOC:dos"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of cell communication","termid":"GO:0010646"},{"relation_name":"is_a","term_name":"regulation of signaling","termid":"GO:0023051"},{"relation_name":"regulates","term_name":"trans-synaptic signaling","termid":"GO:0099537"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"regulation of trans-synaptic signaling","termid":"GO:0099177"}


id: GO:0003336
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The delamination process that results in the shedding of a corneocyte from the surface of the epidermis.","definition_xrefs":["GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"delamination","termid":"GO:0060232"},{"relation_name":"part_of","term_name":"corneocyte development","termid":"GO:0003335"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0007155"},{"rel_name":"negatively_regulates","termid":"GO:0007155"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0007155"],"is_obsolete":false,"name":"corneocyte desquamation","synonyms":[{"name":"epidermal desquamation","type":"exact"}],"termid":"GO:0003336"}


id: PBO:0043286
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"C-type lectin domain family 4 member O, pseudogene","termid":"PBO:0043286"}


id: MOD:00382
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively crosslinks an L-methionyl-L-tyrosine dipeptide to form 3-(2-methylthio)ethyl-6-(4-hydroxybenzylidene)-5-iminopiperazin-2-one.","definition_xrefs":["PubMed:10852900","PubMed:11259412","RESID:AA0377","PubMed:15491166"],"direct_ancestors":[{"relation_name":"is_a","term_name":"crosslinked L-methionine residue","termid":"MOD:02052"},{"relation_name":"is_a","term_name":"crosslinked L-tyrosine residue","termid":"MOD:02058"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"3-(2-methylthio)ethyl-6-(4-hydroxybenzylidene)-5-iminopiperazin-2-one","synonyms":[{"name":"3-(2-methylsulfanyl)ethyl-6-(4-hydroxybenzylidene)-5-iminopiperazin-2-one","type":"exact"},{"name":"3-(2-methylthio)ethyl-6-(4-hydroxybenzylidene)-5-amino-3,6-didehydropyrazin-2-ol","type":"exact"},{"name":"3-(2-methylthio)ethyl-6-(4-hydroxybenzylidene)-5-iminopiperazin-2-one","type":"exact"},{"name":"GFP-like chromoprotein asFP595 chromophore","type":"exact"},{"name":"L-methionyl-L-tyrosyl-2-keto-5-iminopiperazine","type":"exact"}],"termid":"MOD:00382"}


id: PBO:0072323
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein S26 pseudogene 9","termid":"PBO:0072323"}


id: PBO:0049533
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"H2A.Z histone pseudogene 4","termid":"PBO:0049533"}


id: GO:0009832
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A cellular process that results in the biosynthesis of constituent macromolecules, assembly, and arrangement of constituent parts of a cellulose and pectin-containing cell wall. An example of this is found in Arabidopsis thaliana.","definition_xrefs":["GOC:mtg_sensu","GOC:go_curators","GOC:lr"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell wall biogenesis","termid":"GO:0042546"},{"relation_name":"is_a","term_name":"plant-type cell wall organization or biogenesis","termid":"GO:0071669"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044085"},{"rel_name":"is_a","termid":"GO:0071554"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0044085","GO:0071554","GO:0008150"],"is_obsolete":false,"name":"plant-type cell wall biogenesis","synonyms":[{"name":"cell wall anabolism","type":"broad"},{"name":"cell wall assembly","type":"broad"},{"name":"cell wall biosynthetic process","type":"broad"},{"name":"cell wall formation","type":"broad"},{"name":"cell wall synthesis","type":"broad"},{"name":"cellulose and pectin-containing cell wall biogenesis","type":"exact"}],"termid":"GO:0009832"}


id: GO:0019164
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: pyruvate + CoA + 2 oxidized ferredoxin = acetyl-CoA + CO2 + 2 reduced ferredoxin + 2 H+.","definition_xrefs":["KEGG_REACTION:R01196"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the aldehyde or oxo group of donors, iron-sulfur protein as acceptor","termid":"GO:0016625"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016491"],"is_obsolete":false,"name":"pyruvate synthase activity","secondary_identifiers":["MetaCyc:PYRUFLAVREDUCT-RXN","GO:0018696","RHEA:12765","EC:1.2.7.1"],"synonyms":[{"name":"PFOR","type":"exact"},{"name":"pyruvate oxidoreductase activity","type":"related"},{"name":"pyruvate synthetase activity","type":"related"},{"name":"pyruvate-ferredoxin reductase activity","type":"exact"},{"name":"pyruvate:ferredoxin 2-oxidoreductase (CoA-acetylating)","type":"related"},{"name":"pyruvate:ferredoxin oxidoreductase activity","type":"related"},{"name":"pyruvic-ferredoxin oxidoreductase activity","type":"related"}],"termid":"GO:0019164"}


id: GO:0000492
data:
  {"annotated_genes":["SJAG_01567","SJAG_05223","SJAG_00752","SJAG_05679"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[78072,92835,93286,99307],"is_not":false,"summary":null,"term":"GO:0000492"}]},"cv_name":"biological_process","definition":"The aggregation, arrangement and bonding together of proteins and a box C/D snoRNA to form a box C/D small nucleolar ribonucleoprotein (snoRNP) complex.","definition_xrefs":["GOC:krc"],"direct_ancestors":[{"relation_name":"is_a","term_name":"small nucleolar ribonucleoprotein complex assembly","termid":"GO:0000491"}],"gene_count":4,"genes_by_uniquename":{"SJAG_00752":null,"SJAG_01567":null,"SJAG_05223":null,"SJAG_05679":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0044085"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0065003"}],"interesting_parent_ids":["GO:0008150","GO:0065003","GO:0044085"],"is_obsolete":false,"name":"box C/D snoRNP assembly","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"synonyms":[{"name":"box C/D small nucleolar ribonucleoprotein complex assembly","type":"exact"}],"termid":"GO:0000492","terms_by_termid":{"GO:0000492":null}}


id: PBO:0082197
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Allantoicase; converts allantoate to urea and ureidoglycolate in the second step of allantoin degradation; expression sensitive to nitrogen catabolite repression and induced by allophanate, an intermediate in allantoin degradation","termid":"PBO:0082197"}


id: PBO:0060041
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MT-ND4 pseudogene 29","termid":"PBO:0060041"}


id: PBO:0027628
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_transposable_element-derived_small_RNA_level","termid":"PBO:0027628"}


id: PBO:0060594
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"neural cell adhesion molecule 2","termid":"PBO:0060594"}


id: PBO:0065895
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RAB40A like","termid":"PBO:0065895"}


id: PBO:0087102
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Ribosomal protein 51 (rp51) of the small (40s) subunit; homologous to mammalian ribosomal protein S17, no bacterial homolog; RPS17A has a paralog, RPS17B, that arose from the whole genome duplication","termid":"PBO:0087102"}


id: GO:0033167
data:
  {"annotated_genes":["SJAG_04061","SJAG_02594","SJAG_02621"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[84313,84366,113047],"is_not":false,"summary":null,"term":"GO:0033167"}]},"cv_name":"cellular_component","definition":"A ribonucleoprotein complex that contains members of the Argonaute family of proteins, additional protein subunits, and duplex siRNA; required for heterochromatin assembly and siRNA generation. Possibly involved in the conversion of ds siRNA to ss siRNA.","definition_xrefs":["GOC:vw","PMID:17310250"],"direct_ancestors":[{"relation_name":"is_a","term_name":"RNAi effector complex","termid":"GO:0031332"},{"relation_name":"is_a","term_name":"nuclear protein-containing complex","termid":"GO:0140513"}],"gene_count":3,"genes_by_uniquename":{"SJAG_02594":null,"SJAG_02621":null,"SJAG_04061":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0005634"}],"interesting_parent_ids":["GO:0005634","GO:0005575","GO:0032991"],"is_obsolete":false,"name":"ARC complex","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"argonaute siRNA chaperone complex","type":"exact"}],"termid":"GO:0033167","terms_by_termid":{"GO:0033167":null}}


id: GO:0030644
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A homeostatic process involved in the maintenance of a steady state level of chloride ions within a cell.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"intracellular monoatomic anion homeostasis","termid":"GO:0030002"},{"relation_name":"is_a","term_name":"chloride ion homeostasis","termid":"GO:0055064"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0098771"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0098771","GO:0008150"],"is_obsolete":false,"name":"intracellular chloride ion homeostasis","synonyms":[{"name":"cellular chloride ion homeostasis","type":"exact"}],"termid":"GO:0030644"}


id: GO:0106237
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: arachidonate + O2 = (5Z,8Z,10E,12R,14Z)-12-hydroperoxyicosa-5,8,10,14-tetraenoate.","definition_xrefs":["PMID:10100631","RHEA:41336","GOC:gap","PMID:11256953"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen","termid":"GO:0016702"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016491"],"is_obsolete":false,"name":"arachidonate 12(R)-lipoxygenase activity","termid":"GO:0106237"}


id: PBO:0040421
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ATP6V0D1 divergent transcript","termid":"PBO:0040421"}


id: PBO:0085632
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein involved in G2/M phase progression and response to DNA damage; interacts with Rad53p; contains an RNA recognition motif, a nuclear localization signal, and several SQ/TQ cluster domains; hyperphosphorylated in response to DNA damage","termid":"PBO:0085632"}


id: PBO:0018094
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitotic septin Spn3","termid":"PBO:0018094"}


id: PBO:0088146
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Vacuolar transporter; exports large neutral amino acids from the vacuole; member of a family of seven S. cerevisiae genes (AVT1-7) related to vesicular GABA-glycine transporters; localizes to sites of contact between the vacuole and mitochondria (vCLAMPs)","termid":"PBO:0088146"}


id: PBO:0049179
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"GREB1L divergent transcript","termid":"PBO:0049179"}


id: PBO:0086333
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Proton-coupled oligopeptide transporter of the plasma membrane; also transports glutathione and phytochelatin; member of the OPT family","termid":"PBO:0086333"}


id: PBO:0030366
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-elongated_multinucleate_multiseptate_vegetative_cell,_single_septa_between_nuclei","termid":"PBO:0030366"}


id: GO:0060427
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The biological process whose specific outcome is the progression of lung connective tissue from an initial condition to its mature state. This process begins with the formation of lung connective tissue and ends with the mature structure. The lung connective tissue is a material made up of fibers forming a framework and support structure for the lungs.","definition_xrefs":["GOC:mtg_lung","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"connective tissue development","termid":"GO:0061448"},{"relation_name":"part_of","term_name":"lung development","termid":"GO:0030324"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"lung connective tissue development","synonyms":[{"name":"pulmonary connective tissue development","type":"exact"}],"termid":"GO:0060427"}


id: MOD:00786
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively substitutes one or more (2)H deuterium atoms for (1)H protium atoms.","definition_xrefs":["PubMed:18688235"],"direct_ancestors":[{"relation_name":"is_a","term_name":"(2)H deuterium labeled residue","termid":"MOD:00839"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"deuterium substituted residue","synonyms":[{"name":"D(H)Res","type":"exact"}],"termid":"MOD:00786"}


id: GO:0002705
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate, or extent of leukocyte mediated immunity.","definition_xrefs":["GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of immune effector process","termid":"GO:0002699"},{"relation_name":"is_a","term_name":"regulation of leukocyte mediated immunity","termid":"GO:0002703"},{"relation_name":"positively_regulates","term_name":"leukocyte mediated immunity","termid":"GO:0002443"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of leukocyte mediated immunity","synonyms":[{"name":"activation of leukocyte mediated immunity","type":"narrow"},{"name":"positive regulation of immune cell mediated immunity","type":"exact"},{"name":"positive regulation of leucocyte mediated immunity","type":"exact"},{"name":"stimulation of leukocyte mediated immunity","type":"narrow"},{"name":"up regulation of leukocyte mediated immunity","type":"exact"},{"name":"up-regulation of leukocyte mediated immunity","type":"exact"},{"name":"upregulation of leukocyte mediated immunity","type":"exact"}],"termid":"GO:0002705"}


id: PR:Q9P7Q4
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A vesicle-fusing ATPase that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx","PANTHER:PTHR23078:SF0","OMA:SCHPO01950"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"vesicular-fusion protein sec18 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC1834.11c","secondary_identifiers":["UniProtKB:Q9P7Q4"],"synonyms":[{"name":"Spom972h-NSF","type":"exact"}],"termid":"PR:Q9P7Q4"}


id: GO:0034829
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 2-hydroxydec-2,4-diene-1,10-dioate + H2O = (2Z)-2,4-dihydroxydec-2-enedioate.","definition_xrefs":["UM-BBD_reactionID:r1172"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hydro-lyase activity","termid":"GO:0016836"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016829"}],"interesting_parent_ids":["GO:0016829","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"2-hydroxydec-2,4-diene-1,10-dioate hydratase activity","termid":"GO:0034829"}


id: PBO:0045032
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DISC1 scaffold protein","termid":"PBO:0045032"}


id: PBO:0088755
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"histone H2A-H2B chaperone Nap2","termid":"PBO:0088755"}


id: FYPO:0005306
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to centromeric chromatin is abnormal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal protein localization to centromere during vegetative growth","termid":"FYPO:0000449"},{"relation_name":"is_a","term_name":"abnormal protein localization to chromatin during vegetative growth","termid":"FYPO:0000452"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0000002","FYPO:0000138","FYPO:0005447","FYPO:0001985"],"is_obsolete":false,"name":"abnormal protein localization to centromeric chromatin during vegetative growth","synonyms":[{"name":"abnormal protein localisation to centromeric chromatin during vegetative growth","type":"exact"},{"name":"abnormal protein localization to centromeric chromatin during mitotic cell cycle","type":"related"},{"name":"abnormal protein localization to chromatin at centromere","type":"exact"}],"termid":"FYPO:0005306"}


id: GO:0010075
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process involved in maintaining the size and shape of a meristem.","definition_xrefs":["GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of developmental growth","termid":"GO:0048638"},{"relation_name":"part_of","term_name":"meristem maintenance","termid":"GO:0010073"},{"relation_name":"regulates","term_name":"meristem growth","termid":"GO:0035266"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of meristem growth","synonyms":[{"name":"regulation of meristem size","type":"exact"}],"termid":"GO:0010075"}


id: PBO:0070586
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L7a pseudogene 52","termid":"PBO:0070586"}


id: PBO:0040756
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB","termid":"PBO:0040756"}


id: PBO:0060108
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MT-ND6 pseudogene 9","termid":"PBO:0060108"}


id: GO:0071290
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a platinum stimulus.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to platinum ion","termid":"GO:0070541"},{"relation_name":"is_a","term_name":"cellular response to metal ion","termid":"GO:0071248"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cellular response to platinum ion","synonyms":[{"name":"cellular response to platinum","type":"exact"}],"termid":"GO:0071290"}


id: GO:0060531
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which relatively unspecialized cells acquires specialized structural and functions of a neuroendocrine cell of the prostate gland acinus.","definition_xrefs":["PMID:18977204","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"epithelial cell differentiation involved in prostate gland development","termid":"GO:0060742"},{"relation_name":"is_a","term_name":"neuroendocrine cell differentiation","termid":"GO:0061101"},{"relation_name":"part_of","term_name":"prostate glandular acinus development","termid":"GO:0060525"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"neuroendocrine cell differentiation involved in prostate gland acinus development","termid":"GO:0060531"}


id: GO:1905583
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a mannose stimulus.","definition_xrefs":["GOC:TermGenie","PMID:16699509","GO_REF:0000071"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular response to hexose stimulus","termid":"GO:0071331"},{"relation_name":"is_a","term_name":"response to mannose","termid":"GO:1905582"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cellular response to mannose","termid":"GO:1905583"}


id: FYPO:0008157
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which histone deacetylation is abnormal at the silent-mating type locus.","direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal histone deacetylation during vegetative growth","termid":"FYPO:0000201"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0002274"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0002494"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0000002","FYPO:0002274","FYPO:0002494","FYPO:0001985","FYPO:0001320"],"is_obsolete":false,"name":"abnormal histone deacetylation at the silent mating-type locus during vegetative growth","termid":"FYPO:0008157"}


id: PBO:0001467
data:
  {"annotation_feature_type":"gene","cv_name":"subunit_composition","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"monomeric","termid":"PBO:0001467"}


id: GO:0106402
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of a Lewis x epitope, a trisaccharide (beta-D-galactosyl-(1,4)-[alpha-L-fucosyl-(1,3)]-N-acetyl-beta-D-glucosamine) expressed on several glycolipids, glycoproteins, and proteoglycans of the nervous system. The related Lewis x epitope is formed by alpha(1,3) fucosylation of the N-acetylglucosaminyl residue of a type 2 histo-blood group antigen precursor disaccharide.","definition_xrefs":["PMID:16973732","PMID:23000574"],"direct_ancestors":[{"relation_name":"is_a","term_name":"carbohydrate derivative biosynthetic process","termid":"GO:1901137"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"Lewis x epitope biosynthetic process","synonyms":[{"name":"sLeX biosynthetic process","type":"related"},{"name":"sialyl-Lewis X biosynthetic process","type":"related"}],"termid":"GO:0106402"}


id: PBO:0000167
data:
  {"annotation_feature_type":"gene","cv_name":"EC numbers","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"2.1.2.11","termid":"PBO:0000167"}


id: FYPO:0000881
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the trimethylation of lysine at position 9 of histone H3 in centromere inner repeat regions occurs to a greater extent than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal histone H3-K9 trimethylation at centromere inner repeat during vegetative growth","termid":"FYPO:0000865"},{"relation_name":"is_a","term_name":"increased histone H3-K9 trimethylation at centromere during vegetative growth","termid":"FYPO:0000880"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0002494"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0002274"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0005447","FYPO:0001320","FYPO:0002494","FYPO:0001985","FYPO:0002274"],"is_obsolete":false,"name":"increased histone H3-K9 trimethylation at centromere inner repeat during vegetative growth","synonyms":[{"name":"increased histone H3 K9 trimethylation at centromere inner repeat during vegetative growth","type":"exact"},{"name":"increased histone H3-K9 trimethylation at centromere imr during vegetative growth","type":"exact"},{"name":"increased histone H3-K9 trimethylation at centromere inner repeat during mitotic cell cycle","type":"related"},{"name":"increased histone H3K9 trimethylation at centromere inner repeat during vegetative growth","type":"exact"},{"name":"increased histone H3K9me3 at centromere inner repeat during vegetative growth","type":"exact"},{"name":"increased histone lysine H3 K9 trimethylation at centromere inner repeat during vegetative growth","type":"exact"}],"termid":"FYPO:0000881"}


id: GO:0048001
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: D-erythrose 4-phosphate + H2O + NAD+ = 4-phospho-D-erythronate + 2 H+ + NADH.","definition_xrefs":["EC:1.2.1.72","RHEA:12056"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor","termid":"GO:0016620"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016491","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"erythrose-4-phosphate dehydrogenase activity","secondary_identifiers":["MetaCyc:ERYTH4PDEHYDROG-RXN","GO:0033724","KEGG_REACTION:R01825"],"synonyms":[{"name":"D-erythrose 4-phosphate:NAD+ oxidoreductase activity","type":"related"},{"name":"E4P dehydrogenase activity","type":"related"},{"name":"E4PDH","type":"related"},{"name":"Epd dehydrogenase activity","type":"related"},{"name":"GapB","type":"related"},{"name":"erythrose 4-phosphate dehydrogenase activity","type":"related"}],"termid":"GO:0048001"}


id: PBO:0078287
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-Cys (anticodon GCA) 20-1","termid":"PBO:0078287"}


id: GO:0072046
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Coordinated organization of groups of cells in the plane of an epithelium that contributes to the shaping of a nephron.","definition_xrefs":["GOC:mtg_kidney_jan10"],"direct_ancestors":[{"relation_name":"is_a","term_name":"establishment of planar polarity","termid":"GO:0001736"},{"relation_name":"part_of","term_name":"nephron morphogenesis","termid":"GO:0072028"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"establishment of planar polarity involved in nephron morphogenesis","synonyms":[{"name":"establishment of planar cell polarity involved in nephron morphogenesis","type":"narrow"}],"termid":"GO:0072046"}


id: GO:1990401
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process occurring during the embryonic phase whose specific outcome is the progression of the lung over time, from its formation to the mature structure.","definition_xrefs":["PMID:24785085"],"direct_ancestors":[{"relation_name":"is_a","term_name":"embryonic organ development","termid":"GO:0048568"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"embryonic lung development","termid":"GO:1990401"}


id: CHEBI:142517
data:
  {"annotation_feature_type":"gene","cv_name":"chebi_ontology","definition":"A benzoate ester resulting from the formal condensation of the carboxy group of vanillic acid with the hydroxy group of (−)-borneol. A metabolite isolated from Ferula dissecta.","direct_ancestors":[{"relation_name":"is_a","term_name":"chemical entity","termid":"CHEBI:24431"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tschimganine","termid":"CHEBI:142517"}


id: PBO:0045383
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DPP4 divergent transcript","termid":"PBO:0045383"}


id: FYPO:0003442
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to one or more actin cables does not occur. Actin cables are parallel actin filament bundles nucleated by formin, and are the most common form of actin filament bundles found in yeasts.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abolished protein localization during vegetative growth","termid":"FYPO:0001179"},{"relation_name":"is_a","term_name":"abolished cellular process","termid":"FYPO:0005449"},{"relation_name":"is_a","term_name":"abnormal protein localization to actin cable","termid":"FYPO:0006096"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0000138","FYPO:0005447","FYPO:0001320","FYPO:0001985"],"is_obsolete":false,"name":"abolished protein localization to actin cable","synonyms":[{"name":"abolished protein localisation to actin cable","type":"exact"},{"name":"abolished protein localization to actin cable during mitotic cell cycle","type":"related"},{"name":"abolished protein localization to actin cable during vegetative growth","type":"exact"},{"name":"abolished protein localization to formin-nucleated actin cable","type":"exact"},{"name":"protein absent from actin cable","type":"related"},{"name":"protein localization to actin cable abolished","type":"exact"}],"termid":"FYPO:0003442"}


id: GO:0071875
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A G protein-coupled receptor signaling pathway initiated by a ligand binding to an adrenergic receptor on the surface of a target cell, and ending with the regulation of a downstream cellular process.","definition_xrefs":["GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"G protein-coupled receptor signaling pathway","termid":"GO:0007186"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"adrenergic receptor signaling pathway","synonyms":[{"name":"adrenergic receptor signalling pathway","type":"exact"},{"name":"adrenoceptor signaling pathway","type":"exact"}],"termid":"GO:0071875"}


id: PBO:0014589
data:
  {"annotation_feature_type":"gene","cv_name":"name_description","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Mitosis Inhibitory Kinase","termid":"PBO:0014589"}


id: GO:0014891
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process, occurring in striated muscle, that is characterized by a decrease in protein content, fiber diameter, force production and fatigue resistance in response to different conditions such as starvation, aging and disuse.","definition_xrefs":["GOC:mtg_muscle"],"direct_ancestors":[{"relation_name":"is_a","term_name":"striated muscle adaptation","termid":"GO:0014888"},{"relation_name":"is_a","term_name":"muscle atrophy","termid":"GO:0014889"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"striated muscle atrophy","termid":"GO:0014891"}


id: GO:0001733
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 3'-phosphoadenosine 5'-phosphosulfate + a galactosylceramide = adenosine 3',5'-bisphosphate + a galactosylceramidesulfate.","definition_xrefs":["EC:2.8.2.11","PMID:10727929","RHEA:20613"],"direct_ancestors":[{"relation_name":"is_a","term_name":"galactose 3-O-sulfotransferase activity","termid":"GO:0050694"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016782"},{"rel_name":"is_a","termid":"GO:0016740"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016740","GO:0016782"],"is_obsolete":false,"name":"galactosylceramide sulfotransferase activity","secondary_identifiers":["Reactome:R-HSA-9844587","MetaCyc:GALACTOSYLCERAMIDE-SULFOTRANSFERASE-RXN"],"synonyms":[{"name":"3'-phosphoadenosine-5'-phosphosulfate-cerebroside sulfotransferase activity","type":"related"},{"name":"3'-phosphoadenylyl-sulfate:galactosylceramide 3'-sulfotransferase activity","type":"related"},{"name":"GSase","type":"related"},{"name":"cerebroside sulfotransferase activity","type":"exact"},{"name":"galactocerebroside sulfotransferase activity","type":"related"},{"name":"galactolipid sulfotransferase activity","type":"related"},{"name":"galactosylceramide sulphotransferase activity","type":"exact"},{"name":"glycolipid sulfotransferase activity","type":"related"},{"name":"glycosphingolipid sulfotransferase activity","type":"related"}],"termid":"GO:0001733"}


id: FYPO:0000074
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"OBSOLETE. An increased chemical resistance phenotype observed in the vegetative growth phase of the life cycle in which cells grow in the presence of a higher concentration of a drug than normal.","definition_xrefs":["PomBase:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete resistance to drug (obsolete FYPO:0000074)","synonyms":[{"name":"drug resistance","type":"exact"},{"name":"drug resistant","type":"exact"},{"name":"resistance to drug during vegetative growth","type":"exact"},{"name":"resistant to drugs","type":"exact"}],"termid":"FYPO:0000074"}


id: PR:O74448
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PANTHER:PTHR10657:SF4","OMA:SCHPO04403","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"peptidyl-prolyl cis-trans isomerase pin1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC16C4.03","secondary_identifiers":["UniProtKB:O74448"],"synonyms":[{"name":"PPIase pin1 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-PIN1","type":"exact"}],"termid":"PR:O74448"}


id: PBO:0082095
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"6-phosphogluconolactonase; catalyzes the second step of the pentose phosphate pathway; weak multicopy suppressor of los1-1 mutation; homologous to Sol2p and Sol1p; SOL3 has a paralog, SOL4, that arose from the whole genome duplication","termid":"PBO:0082095"}


id: GO:0052399
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The activation by an organism of programmed cell death in the symbiont organism. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction.","definition_xrefs":["GOC:mtg_pamgo"],"gene_count":0,"genotype_count":0,"name":"obsolete induction by organism of symbiont programmed cell death (obsolete GO:0052399)","synonyms":[{"name":"activation by organism of symbiont programmed cell death","type":"exact"},{"name":"induction by organism of symbiont programmed cell death","type":"exact"}],"termid":"GO:0052399"}


id: PBO:0000708
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"translation initiation factor eIF3h (p40)","termid":"PBO:0000708"}


id: GO:0044037
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The chemical reactions and pathways involving macromolecules forming, or destined to form, part of a cell wall, involving more than one organism. A cell wall is a rigid or semi-rigid envelope lying outside the cell membrane of plant, fungal and most prokaryotic cells, maintaining their shape and protecting them from osmotic lysis.","definition_xrefs":["GOC:mah","GOC:tair_curators"],"gene_count":0,"genotype_count":0,"name":"obsolete multi-organism cell wall macromolecule metabolic process (obsolete GO:0044037)","synonyms":[{"name":"multi-organism cell wall macromolecule metabolism","type":"exact"}],"termid":"GO:0044037"}


id: PBO:0090095
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RhoGAP, with CRAL-TRIO_domain Rga10","termid":"PBO:0090095"}


id: PBO:0083570
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Dubious open reading frame; unlikely to encode a functional protein, based on available experimental and comparative sequence data; partially overlaps verified ORF MRS1","termid":"PBO:0083570"}


id: GO:0008551
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + Cd2+(in) = ADP + phosphate + Cd2+(out).","definition_xrefs":["PMID:17326661"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cadmium ion transmembrane transporter activity","termid":"GO:0015086"},{"relation_name":"is_a","term_name":"P-type ion transporter activity","termid":"GO:0015662"},{"relation_name":"is_a","term_name":"ATPase-coupled monoatomic cation transmembrane transporter activity","termid":"GO:0019829"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0005215","GO:0003674","GO:0022857"],"is_obsolete":false,"name":"P-type cadmium transporter activity","secondary_identifiers":["MetaCyc:3.6.3.3-RXN","GO:0008561","EC:7.2.2.21","RHEA:12132"],"synonyms":[{"name":"Cd(2+)-exporting ATPase activity","type":"related"},{"name":"Cd2+-exporting ATPase activity","type":"related"},{"name":"cadmium exporting ATPase activity","type":"exact"},{"name":"cadmium transmembrane transporter activity, phosphorylative mechanism","type":"related"},{"name":"cadmium-exporting ATPase activity","type":"narrow"},{"name":"cadmium-translocating P-type ATPase activity","type":"exact"}],"termid":"GO:0008551"}


id: internal:replaced_by
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"replaced_by","termid":"internal:replaced_by"}


id: PBO:0028550
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_rate_of_microtubule_depolymerization","termid":"PBO:0028550"}


id: GO:1901607
data:
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chemical reactions and pathways resulting in the formation of an alpha-amino acid.","definition_xrefs":["GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"carboxylic acid biosynthetic process","termid":"GO:0046394"},{"relation_name":"is_a","term_name":"organonitrogen compound biosynthetic process","termid":"GO:1901566"},{"relation_name":"is_a","term_name":"alpha-amino acid metabolic 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id: PBO:0063506
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pyruvate dehydrogenase phosphatase regulatory subunit 2, pseudogene","termid":"PBO:0063506"}


id: GO:0070985
data:
  {"annotated_genes":["SJAG_03618","SJAG_04614","SJAG_00150"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[75063,107188,108057],"is_not":false,"summary":null,"term":"GO:0070985"}]},"cv_name":"cellular_component","definition":"A transcription factor complex that forms part of the holo TFIIH complex. In Saccharomyces/human, TFIIK contains Ccl1p/Cyclin H, Tfb3p/MAT1 and Kin28p/CDK7.","definition_xrefs":["PMID:19818408","PMID:22572993","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"RNA polymerase II transcription regulator complex","termid":"GO:0090575"},{"relation_name":"part_of","term_name":"transcription factor TFIIH holo complex","termid":"GO:0005675"}],"gene_count":3,"genes_by_uniquename":{"SJAG_00150":null,"SJAG_03618":null,"SJAG_04614":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0005634"},{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0005654"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575","GO:0032991","GO:0005634","GO:0005654"],"is_obsolete":false,"name":"transcription factor TFIIK complex","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"synonyms":[{"name":"Mcs6/Mcs2/Pmh1 complex","type":"narrow"},{"name":"TFIIK complex","type":"exact"},{"name":"cyclin H-CDK7 complex","type":"related"}],"termid":"GO:0070985","terms_by_termid":{"GO:0070985":null}}


id: GO:0090073
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that increases the frequency, rate or extent of protein homodimerization, interacting selectively with an identical protein to form a homodimer.","definition_xrefs":["GOC:dph","GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of protein binding","termid":"GO:0032092"},{"relation_name":"is_a","term_name":"regulation of protein homodimerization activity","termid":"GO:0043496"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of protein homodimerization activity","termid":"GO:0090073"}


id: PBO:0004007
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"coatomer epsilon subunit (predicted)","termid":"PBO:0004007"}


id: PBO:0083438
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Dubious open reading frame; unlikely to encode a functional protein, based on available experimental and comparative sequence data; partially overlaps the uncharacterized ORF YOR072W; originally identified by fungal homology and RT-PCR","termid":"PBO:0083438"}


id: PBO:0000359
data:
  {"annotation_feature_type":"gene","cv_name":"genome_org","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"antisense transcript detected","termid":"PBO:0000359"}


id: PBO:0091432
data:
  {"annotation_feature_type":"gene","cv_name":"cat_act","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"kcat for base excision activity of 1,N(6)-ethenoadenine = 5.3 x 10^-3 s-1","termid":"PBO:0091432"}


id: PBO:0071888
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RPS3A pseudogene 26","termid":"PBO:0071888"}


id: PBO:0061846
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Obg like ATPase 1","termid":"PBO:0061846"}


id: GO:0048484
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of the enteric nervous system over time, from its formation to the mature structure. The enteric nervous system is composed of two ganglionated neural plexuses in the gut wall which form one of the three major divisions of the autonomic nervous system. The enteric nervous system innervates the gastrointestinal tract, the pancreas, and the gallbladder. It contains sensory neurons, interneurons, and motor neurons. Thus the circuitry can autonomously sense the tension and the chemical environment in the gut and regulate blood vessel tone, motility, secretions, and fluid transport. The system is itself governed by the central nervous system and receives both parasympathetic and sympathetic innervation.","definition_xrefs":["GOC:jid","GOC:sr","FMA:66070"],"direct_ancestors":[{"relation_name":"is_a","term_name":"system development","termid":"GO:0048731"},{"relation_name":"part_of","term_name":"autonomic nervous system development","termid":"GO:0048483"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"enteric nervous system development","termid":"GO:0048484"}


id: GO:0140896
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The series of molecular signals initiated by the binding of a double-stranded DNA or RNA from another organism to cytosolic cyclic GMP-AMP (cGAMP) synthase (cGAS) that activates innate immune responses through production of the second messenger cGAMP, which activates the adaptor STING.","definition_xrefs":["PMID:27648547","PMID:34261127","PMID:34261128"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cytoplasmic pattern recognition receptor signaling pathway","termid":"GO:0002753"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"cGAS/STING signaling pathway","termid":"GO:0140896"}


id: GO:0048662
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the rate or extent of smooth muscle cell proliferation.","definition_xrefs":["CL:0000192","GOC:ebc"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of cell population proliferation","termid":"GO:0008285"},{"relation_name":"is_a","term_name":"regulation of smooth muscle cell proliferation","termid":"GO:0048660"},{"relation_name":"negatively_regulates","term_name":"smooth muscle cell proliferation","termid":"GO:0048659"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of smooth muscle cell proliferation","synonyms":[{"name":"down regulation of smooth muscle cell proliferation","type":"exact"},{"name":"down-regulation of smooth muscle cell proliferation","type":"exact"},{"name":"downregulation of smooth muscle cell proliferation","type":"exact"},{"name":"inhibition of smooth muscle cell proliferation","type":"narrow"},{"name":"negative regulation of SMC proliferation","type":"exact"}],"termid":"GO:0048662"}


id: GO:1900679
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of ferricrocin biosynthetic process.","definition_xrefs":["GOC:di","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of ferricrocin biosynthetic process","termid":"GO:1900678"},{"relation_name":"is_a","term_name":"negative regulation of ferrichrome biosynthetic process","termid":"GO:1905569"},{"relation_name":"negatively_regulates","term_name":"ferricrocin biosynthetic process","termid":"GO:0031171"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0019748"},{"rel_name":"negatively_regulates","termid":"GO:0019748"}],"interesting_parent_ids":["GO:0008150","GO:0019748"],"is_obsolete":false,"name":"negative regulation of ferricrocin biosynthetic process","synonyms":[{"name":"down regulation of ferricrocin anabolism","type":"exact"},{"name":"down regulation of ferricrocin biosynthesis","type":"exact"},{"name":"down regulation of ferricrocin biosynthetic process","type":"exact"},{"name":"down regulation of ferricrocin biosynthetic process, peptide formation","type":"narrow"},{"name":"down regulation of ferricrocin biosynthetic process, peptide modification","type":"narrow"},{"name":"down regulation of ferricrocin formation","type":"exact"},{"name":"down regulation of ferricrocin synthesis","type":"exact"},{"name":"down-regulation of ferricrocin anabolism","type":"exact"},{"name":"down-regulation of ferricrocin biosynthesis","type":"exact"},{"name":"down-regulation of ferricrocin biosynthetic process","type":"exact"},{"name":"down-regulation of ferricrocin biosynthetic process, peptide formation","type":"narrow"},{"name":"down-regulation of ferricrocin biosynthetic process, peptide modification","type":"narrow"},{"name":"down-regulation of ferricrocin formation","type":"exact"},{"name":"down-regulation of ferricrocin synthesis","type":"exact"},{"name":"downregulation of ferricrocin anabolism","type":"exact"},{"name":"downregulation of ferricrocin biosynthesis","type":"exact"},{"name":"downregulation of ferricrocin biosynthetic process","type":"exact"},{"name":"downregulation of ferricrocin biosynthetic process, peptide formation","type":"narrow"},{"name":"downregulation of ferricrocin biosynthetic process, peptide modification","type":"narrow"},{"name":"downregulation of ferricrocin formation","type":"exact"},{"name":"downregulation of ferricrocin synthesis","type":"exact"},{"name":"inhibition of ferricrocin anabolism","type":"exact"},{"name":"inhibition of ferricrocin biosynthesis","type":"exact"},{"name":"inhibition of ferricrocin biosynthetic process","type":"narrow"},{"name":"inhibition of ferricrocin biosynthetic process, peptide formation","type":"narrow"},{"name":"inhibition of ferricrocin biosynthetic process, peptide modification","type":"narrow"},{"name":"inhibition of ferricrocin formation","type":"exact"},{"name":"inhibition of ferricrocin synthesis","type":"exact"},{"name":"negative regulation of ferricrocin anabolism","type":"exact"},{"name":"negative regulation of ferricrocin biosynthesis","type":"exact"},{"name":"negative regulation of ferricrocin biosynthetic process, peptide formation","type":"narrow"},{"name":"negative regulation of ferricrocin biosynthetic process, peptide modification","type":"narrow"},{"name":"negative regulation of ferricrocin formation","type":"exact"},{"name":"negative regulation of ferricrocin synthesis","type":"exact"}],"termid":"GO:1900679"}


id: PBO:0027671
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_response_to_mitotic_cell_cycle_spindle_assembly_checkpoint_signaling","termid":"PBO:0027671"}


id: PBO:0091954
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"wtf meiotic drive antidote Wtf13","termid":"PBO:0091954"}


id: GO:0120040
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of macrophage proliferation.","definition_xrefs":["GOC:rph","GOC:BHF_miRNA","GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of leukocyte proliferation","termid":"GO:0070663"},{"relation_name":"regulates","term_name":"macrophage proliferation","termid":"GO:0061517"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of macrophage proliferation","termid":"GO:0120040"}


id: SO:0000232
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A primary transcript encoding one or more small nucleolar RNAs (SO:0000275).","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nc_primary_transcript","termid":"SO:0000483"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"snoRNA_primary_transcript","synonyms":[{"name":"snoRNA primary transcript","type":"exact"}],"termid":"SO:0000232"}


id: GO:0052633
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: cis-aconitate + H2O = isocitrate.","definition_xrefs":["GOC:pde","GOC:vw","MetaCyc:ACONITATEHYDR-RXN","EC:4.2.1.3"],"gene_count":0,"genotype_count":0,"name":"obsolete isocitrate hydro-lyase (cis-aconitate-forming) activity (obsolete GO:0052633)","synonyms":[{"name":"aconitate hydratase activity","type":"broad"},{"name":"cis-aconitase activity","type":"broad"},{"name":"citrate hydro-lyase activity","type":"broad"},{"name":"citrate(isocitrate) hydro-lyase (cis-aconitate-forming)","type":"broad"},{"name":"citrate(isocitrate) hydro-lyase activity","type":"broad"}],"termid":"GO:0052633"}


id: PR:O74922
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPCC757.12 gene.","definition_xrefs":["PRO:DNx","UniProtKB:O74922"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"alpha-amylase 1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC757.12","synonyms":[{"name":"1,4-alpha-D-glucan glucanohydrolase (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-SPCC757.12","type":"exact"}],"termid":"PR:O74922"}


id: GO:0016652
data:
  {"annotated_genes":["SJAG_01869"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[87263],"is_not":false,"summary":null,"term":"GO:0016652"}]},"cv_name":"molecular_function","definition":"Catalysis of an oxidation-reduction (redox) reaction in which NADH or NADPH acts as a hydrogen or electron donor and reduces NAD+ or NADP.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on NAD(P)H","termid":"GO:0016651"}],"gene_count":1,"genes_by_uniquename":{"SJAG_01869":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0016491","GO:0003824"],"is_obsolete":false,"name":"oxidoreductase activity, acting on NAD(P)H, NAD(P) as acceptor","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["EC:1.6.1.-"],"synonyms":[{"name":"oxidoreductase activity, acting on NAD or NADPH, NAD or NADP as acceptor","type":"related"}],"termid":"GO:0016652","terms_by_termid":{"GO:0016652":null}}


id: PR:O43063
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A proteasome subunit beta type-6 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO03572","PANTHER:PTHR11599:SF4","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"proteasome subunit beta type-1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC4C3.10c","secondary_identifiers":["UniProtKB:O43063"],"synonyms":[{"name":"Spom972h-PSMB6","type":"exact"}],"termid":"PR:O43063"}


id: GO:1990749
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Increases the activity of the enzyme polynucleotide adenylyltransferase.","definition_xrefs":["PMID:19460348","GOC:kmv"],"direct_ancestors":[{"relation_name":"is_a","term_name":"enzyme activator activity","termid":"GO:0008047"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0030234"},{"rel_name":"is_a","termid":"GO:0098772"},{"rel_name":"is_a","termid":"GO:0140677"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0140677","GO:0030234","GO:0098772","GO:0003674"],"is_obsolete":false,"name":"polynucleotide adenylyltransferase activator activity","termid":"GO:1990749"}


id: PBO:0059117
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"monooxygenase DBH like 1","termid":"PBO:0059117"}


id: PBO:0070927
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L17 pseudogene 35","termid":"PBO:0070927"}


id: FYPO:0003224
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which acetylation of lysine at position 14 of histone H3 is normal (i.e. indistinguishable from wild type).","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal histone acetylation during vegetative growth","termid":"FYPO:0003221"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0001312"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0001312","FYPO:0000002","FYPO:0000257"],"is_obsolete":false,"name":"normal histone H3-K14 acetylation during vegetative growth","synonyms":[{"name":"normal histone H3 K14 acetylation during vegetative growth","type":"exact"},{"name":"normal histone H3-K14 acetylation during mitotic cell cycle","type":"related"},{"name":"normal histone H3K14 acetylation during vegetative growth","type":"exact"},{"name":"normal histone lysine H3 K14 acetylation during vegetative growth","type":"exact"}],"termid":"FYPO:0003224"}


id: GO:1904229
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of succinate dehydrogenase activity.","definition_xrefs":["PMID:18160053","GOC:BHF","GOC:TermGenie","GO_REF:0000059","GOC:rl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of oxidoreductase activity","termid":"GO:0051341"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of succinate dehydrogenase activity","synonyms":[{"name":"regulation of fumarate dehydrogenase activity","type":"exact"},{"name":"regulation of fumarate reductase activity","type":"exact"},{"name":"regulation of fumaric hydrogenase activity","type":"exact"},{"name":"regulation of succinate oxidoreductase activity","type":"exact"},{"name":"regulation of succinate:(acceptor) oxidoreductase activity","type":"exact"},{"name":"regulation of succinate:acceptor oxidoreductase activity","type":"exact"},{"name":"regulation of succinic acid dehydrogenase activity","type":"exact"},{"name":"regulation of succinic dehydrogenase activity","type":"broad"},{"name":"regulation of succinodehydrogenase activity","type":"exact"},{"name":"regulation of succinyl dehydrogenase activity","type":"exact"}],"termid":"GO:1904229"}


id: GO:1900689
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of gliotoxin biosynthetic process.","definition_xrefs":["GOC:TermGenie","GOC:di"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of cellular biosynthetic process","termid":"GO:0031326"},{"relation_name":"is_a","term_name":"regulation of amide metabolic process","termid":"GO:0034248"},{"relation_name":"is_a","term_name":"regulation of sulfur metabolic process","termid":"GO:0042762"},{"relation_name":"is_a","term_name":"regulation of secondary metabolite biosynthetic process","termid":"GO:1900376"},{"relation_name":"regulates","term_name":"gliotoxin biosynthetic process","termid":"GO:2001310"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0006790"},{"rel_name":"regulates","termid":"GO:0019748"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0006790","GO:0019748"],"is_obsolete":false,"name":"regulation of gliotoxin biosynthetic process","synonyms":[{"name":"regulation of gliotoxin anabolism","type":"exact"},{"name":"regulation of gliotoxin biosynthesis","type":"exact"},{"name":"regulation of gliotoxin formation","type":"exact"},{"name":"regulation of gliotoxin synthesis","type":"exact"}],"termid":"GO:1900689"}


id: PBO:0091770
data:
  {"annotation_feature_type":"gene","cv_name":"warning","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"The Bioneer strain does not appear contain a deletion","termid":"PBO:0091770"}


id: GO:1990385
data:
  {"annotated_genes":["SJAG_04412","SJAG_00930","SJAG_01837","SJAG_03073"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[96706,98785,111679,113627],"is_not":false,"summary":null,"term":"GO:1990385"}]},"cv_name":"cellular_component","definition":"The area in the center of the meiotic spindle where the spindle microtubules from opposite poles overlap.","definition_xrefs":["PMID:12707312","GOC:kmv"],"direct_ancestors":[{"relation_name":"is_a","term_name":"spindle midzone","termid":"GO:0051233"},{"relation_name":"part_of","term_name":"meiotic spindle","termid":"GO:0072687"}],"gene_count":4,"genes_by_uniquename":{"SJAG_00930":null,"SJAG_01837":null,"SJAG_03073":null,"SJAG_04412":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0015630"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0015630","GO:0005575"],"is_obsolete":false,"name":"meiotic spindle midzone","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:1990385","terms_by_termid":{"GO:1990385":null}}


id: GO:0032125
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of the micronucleus.","definition_xrefs":["GOC:mah","PMID:10503190","GOC:jl","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nucleus organization","termid":"GO:0006997"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"micronucleus organization","synonyms":[{"name":"micronuclear organization","type":"exact"},{"name":"micronuclear organization and biogenesis","type":"related"},{"name":"micronucleus organisation","type":"exact"}],"termid":"GO:0032125"}


id: PBO:0000644
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transcription factor TFIIF complex subunit Tfg3","termid":"PBO:0000644"}


id: GO:1902749
data:
  {"annotated_genes":["SJAG_01205","SJAG_02771","SJAG_00117","SJAG_06592","SJAG_03026","SJAG_02392","SJAG_01010","SJAG_05373","SJAG_01680","SJAG_02266","SJAG_01429","SJAG_02332","SJAG_03942","SJAG_01605","SJAG_03854","SJAG_02563","SJAG_02098","SJAG_01044","SJAG_02723","SJAG_04280","SJAG_00082","SJAG_01076","SJAG_01901","SJAG_04332","SJAG_04394","SJAG_03309","SJAG_04486","SJAG_01146","SJAG_01000","SJAG_03695","SJAG_01084","SJAG_02576","SJAG_01855","SJAG_01873","SJAG_00640","SJAG_00526","SJAG_03067","SJAG_00600","SJAG_00214","SJAG_03927","SJAG_00883","SJAG_04287","SJAG_00364","SJAG_03486","SJAG_00216","SJAG_02342","SJAG_03126","SJAG_01118","SJAG_02858","SJAG_01456","SJAG_02074","SJAG_00318","SJAG_02592","SJAG_01805","SJAG_03592","SJAG_03602","SJAG_01837","SJAG_04671","SJAG_04597","SJAG_03160","SJAG_04140","SJAG_00256","SJAG_03073"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[111089,86885,101815],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0033315"},{"annotations":[95819,89808,85498,96721,111032],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0044878"},{"annotations":[77833,94670,86886,112101,74100,94510,104473,101818,95820,70933,71667,111814,77455,107140,111091,112260,89373],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0033314"},{"annotations":[89939,91226,93765,111034],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0031569"},{"annotations":[86887,71668,87239,95821,112019,74357,101819,77887,84651,104474,112691,94671,96339,106835,85716],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0007095"},{"annotations":[88344,96283,103744,99745,88625,101848,106672,106928,109533,106542,88981,107575,102207,89768],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0010972"},{"annotations":[70465,77117],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0110031"},{"annotations":[89771,105472,72930,106311,94322,102424,89810,83614,70502,98738,111688,87179,93766,83623,87571,103746,111508,97032,89216],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0010971"},{"annotations":[83424,96671],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1905287"},{"annotations":[72927],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0110032"},{"annotations":[107069],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0010389"}]},"cv_name":"biological_process","definition":"Any signaling pathway that modulates the activity of a cell cycle cyclin-dependent protein kinase to modulate the switch from G2 phase to M phase of the cell cycle.","definition_xrefs":["GOC:TermGenie","GO_REF:0000058","GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of cell cycle phase transition","termid":"GO:1901987"},{"relation_name":"regulates","term_name":"cell cycle G2/M phase transition","termid":"GO:0044839"}],"gene_count":63,"genes_by_uniquename":{"SJAG_00082":null,"SJAG_00117":null,"SJAG_00214":null,"SJAG_00216":null,"SJAG_00256":null,"SJAG_00318":null,"SJAG_00364":null,"SJAG_00526":null,"SJAG_00600":null,"SJAG_00640":null,"SJAG_00883":null,"SJAG_01000":null,"SJAG_01010":null,"SJAG_01044":null,"SJAG_01076":null,"SJAG_01084":null,"SJAG_01118":null,"SJAG_01146":null,"SJAG_01205":null,"SJAG_01429":null,"SJAG_01456":null,"SJAG_01605":null,"SJAG_01680":null,"SJAG_01805":null,"SJAG_01837":null,"SJAG_01855":null,"SJAG_01873":null,"SJAG_01901":null,"SJAG_02074":null,"SJAG_02098":null,"SJAG_02266":null,"SJAG_02332":null,"SJAG_02342":null,"SJAG_02392":null,"SJAG_02563":null,"SJAG_02576":null,"SJAG_02592":null,"SJAG_02723":null,"SJAG_02771":null,"SJAG_02858":null,"SJAG_03026":null,"SJAG_03067":null,"SJAG_03073":null,"SJAG_03126":null,"SJAG_03160":null,"SJAG_03309":null,"SJAG_03486":null,"SJAG_03592":null,"SJAG_03602":null,"SJAG_03695":null,"SJAG_03854":null,"SJAG_03927":null,"SJAG_03942":null,"SJAG_04140":null,"SJAG_04280":null,"SJAG_04287":null,"SJAG_04332":null,"SJAG_04394":null,"SJAG_04486":null,"SJAG_04597":null,"SJAG_04671":null,"SJAG_05373":null,"SJAG_06592":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0007049"}],"interesting_parent_ids":["GO:0007049","GO:0008150"],"is_obsolete":false,"name":"regulation of cell cycle G2/M phase transition","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"termid":"GO:1902749","terms_by_termid":{"GO:0007095":null,"GO:0010389":null,"GO:0010971":null,"GO:0010972":null,"GO:0031569":null,"GO:0033314":null,"GO:0033315":null,"GO:0044878":null,"GO:0110031":null,"GO:0110032":null,"GO:1905287":null}}


id: GO:1905576
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to ganglioside GT1b.","definition_xrefs":["GO_REF:0000067","PMID:1454804","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"carboxylic acid binding","termid":"GO:0031406"},{"relation_name":"is_a","term_name":"ganglioside binding","termid":"GO:0035594"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008289"},{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0008289","GO:0005488","GO:0003674"],"is_obsolete":false,"name":"ganglioside GT1b binding","termid":"GO:1905576"}


id: PBO:0027116
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-delayed_onset_of_premeiotic_DNA_replication_during_azygotic_meiosis","termid":"PBO:0027116"}


id: PBO:0005511
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nucleoside diphosphatase Ynd1","termid":"PBO:0005511"}


id: GO:0034284
data:
  {"annotated_genes":["SJAG_01754","SJAG_00574","SJAG_00472","SJAG_03081","SJAG_04312","SJAG_02444","SJAG_04026","SJAG_01254","SJAG_01699"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[89626,111581,104672,101105,102041,104174,101690,97115,110552],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0010619"}]},"cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a monosaccharide stimulus.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to carbohydrate","termid":"GO:0009743"}],"gene_count":9,"genes_by_uniquename":{"SJAG_00472":null,"SJAG_00574":null,"SJAG_01254":null,"SJAG_01699":null,"SJAG_01754":null,"SJAG_02444":null,"SJAG_03081":null,"SJAG_04026":null,"SJAG_04312":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"response to monosaccharide","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"response to monosaccharide stimulus","type":"exact"}],"termid":"GO:0034284","terms_by_termid":{"GO:0010619":null}}


id: GO:0050537
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: (R)-mandelamide + H2O = (R)-mandelate + NH4.","definition_xrefs":["RHEA:22876","EC:3.5.1.86"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides","termid":"GO:0016811"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016810"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016787"}],"interesting_parent_ids":["GO:0016810","GO:0003674","GO:0003824","GO:0016787"],"is_obsolete":false,"name":"mandelamide amidase activity","secondary_identifiers":["KEGG_REACTION:R05783","MetaCyc:3.5.1.86-RXN"],"synonyms":[{"name":"Pseudomonas mandelamide hydrolase activity","type":"related"},{"name":"mandelamide hydrolase activity","type":"related"}],"termid":"GO:0050537"}


id: PBO:0048600
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ghrelin and obestatin prepropeptide","termid":"PBO:0048600"}


id: PBO:0090424
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transketolase Tkt1","termid":"PBO:0090424"}


id: GO:1904931
data:
  {"annotated_genes":["SJAG_00399"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[98217],"is_not":false,"summary":null,"term":"GO:1904931"}]},"cv_name":"molecular_function","definition":"Binding to an MCM complex.","definition_xrefs":["GOC:TermGenie","PMID:12604790"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein-containing complex binding","termid":"GO:0044877"}],"gene_count":1,"genes_by_uniquename":{"SJAG_00399":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0005488","GO:0003674"],"is_obsolete":false,"name":"MCM complex binding","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"mini-chromosome maintenance complex binding","type":"exact"}],"termid":"GO:1904931","terms_by_termid":{"GO:1904931":null}}


id: GO:0160045
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A multilamellar subcellular structure formed in the cytoplasm of developing neuron, composed of Tmem240 and Emd proteins.","definition_xrefs":["PMID:32535204"],"direct_ancestors":[{"relation_name":"is_a","term_name":"intracellular membrane-bounded organelle","termid":"GO:0043231"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"TMEM240-body","synonyms":[{"name":"T240-body","type":"exact"}],"termid":"GO:0160045"}


id: GO:0061085
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that modulates the rate, frequency, or extent of histone H3-K27 methylation. Histone H3-K27 methylation is the modification of histone H3 by addition of a methyl group to lysine at position 27 of the histone.","definition_xrefs":["GOC:dph","GOC:tb"],"gene_count":0,"genotype_count":0,"name":"obsolete regulation of histone H3-K27 methylation (obsolete GO:0061085)","termid":"GO:0061085"}


id: PBO:0046517
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ER lipid raft associated 1","termid":"PBO:0046517"}


id: GO:0006542
data:
  {"annotated_genes":["SJAG_00359"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[71149],"is_not":false,"summary":null,"term":"GO:0006542"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of glutamine, 2-amino-4-carbamoylbutanoic acid.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"glutamine metabolic process","termid":"GO:0006541"},{"relation_name":"is_a","term_name":"glutamine family amino acid biosynthetic process","termid":"GO:0009084"}],"gene_count":1,"genes_by_uniquename":{"SJAG_00359":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0006520"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006520","GO:0044281","GO:0008150"],"is_obsolete":false,"name":"glutamine biosynthetic process","references_by_uniquename":{"GO_REF:0000033":null},"secondary_identifiers":["MetaCyc:GLNSYN-PWY"],"synonyms":[{"name":"glutamine anabolism","type":"exact"},{"name":"glutamine biosynthesis","type":"exact"},{"name":"glutamine formation","type":"exact"},{"name":"glutamine synthesis","type":"exact"}],"termid":"GO:0006542","terms_by_termid":{"GO:0006542":null}}


id: GO:0031067
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that stops, prevents, or reduces the frequency, rate or extent of the removal of acetyl groups to histones in centromeric DNA.","definition_xrefs":["GOC:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete negative regulation of histone deacetylation at centromere (obsolete GO:0031067)","synonyms":[{"name":"down regulation of histone deacetylation at centromere","type":"exact"},{"name":"down-regulation of histone deacetylation at centromere","type":"exact"},{"name":"downregulation of histone deacetylation at centromere","type":"exact"},{"name":"inhibition of histone deacetylation at centromere","type":"narrow"}],"termid":"GO:0031067"}


id: PBO:0053369
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 290","termid":"PBO:0053369"}


id: GO:0032064
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of translation initiation, as a result of a stimulus indicating an increase or decrease in the concentration of solutes outside the organism or cell.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of translational initiation in response to stress","termid":"GO:0032058"},{"relation_name":"is_a","term_name":"positive regulation of translation in response to osmotic stress","termid":"GO:0032062"},{"relation_name":"is_a","term_name":"regulation of translational initiation in response to osmotic stress","termid":"GO:0043561"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"positively_regulates","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0008150","GO:0010467"],"is_obsolete":false,"name":"positive regulation of translational initiation in response to osmotic stress","synonyms":[{"name":"activation of translation initiation in response to osmotic stress","type":"narrow"},{"name":"stimulation of translation initiation in response to osmotic stress","type":"narrow"},{"name":"up regulation of translation initiation in response to osmotic stress","type":"exact"},{"name":"up-regulation of translation initiation in response to osmotic stress","type":"exact"},{"name":"upregulation of translation initiation in response to osmotic stress","type":"exact"}],"termid":"GO:0032064"}


id: GO:0030611
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the interconversion of arsenate and arsenite.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity","termid":"GO:0016491"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003824","GO:0016491","GO:0003674"],"is_obsolete":false,"name":"arsenate reductase activity","termid":"GO:0030611"}


id: GO:0140357
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The directed movement of heme from inside the vacuole across the vacuolar membrane and into the cytosol.","definition_xrefs":["PMID:28193844"],"direct_ancestors":[{"relation_name":"is_a","term_name":"vacuolar transmembrane transport","termid":"GO:0034486"},{"relation_name":"is_a","term_name":"heme transmembrane transport","termid":"GO:0035351"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0055085"},{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0051179"}],"interesting_parent_ids":["GO:0055085","GO:0006810","GO:0051179","GO:0008150"],"is_obsolete":false,"name":"heme export from vacuole to cytoplasm","termid":"GO:0140357"}


id: PBO:0044344
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CYCS pseudogene 28","termid":"PBO:0044344"}


id: GO:1905926
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that activates or increases the frequency, rate or extent of invadopodium assembly.","definition_xrefs":["GO_REF:0000058","GOC:TermGenie","PMID:15684033"],"gene_count":0,"genotype_count":0,"name":"obsolete positive regulation of invadopodium assembly (obsolete GO:1905926)","synonyms":[{"name":"activation of invadopodium assembly","type":"narrow"},{"name":"activation of invadopodium formation","type":"narrow"},{"name":"positive regulation of invadopodium formation","type":"exact"},{"name":"up regulation of invadopodium assembly","type":"exact"},{"name":"up regulation of invadopodium formation","type":"exact"},{"name":"up-regulation of invadopodium assembly","type":"exact"},{"name":"up-regulation of invadopodium formation","type":"exact"},{"name":"upregulation of invadopodium assembly","type":"exact"},{"name":"upregulation of invadopodium formation","type":"exact"}],"termid":"GO:1905926"}


id: GO:0103103
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: UDP-alpha-D-glucose + 9-methylthiononylhydroximate = 8-methylthiooctyldesulfoglucosinolate + UDP + H+.","definition_xrefs":["GOC:pz","EC:2.4.1.195"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hexosyltransferase activity","termid":"GO:0016758"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016757"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016740"}],"interesting_parent_ids":["GO:0003674","GO:0016740","GO:0016757","GO:0003824"],"is_obsolete":false,"name":"UDP-glucose: 9-methylthiononylhydroximate S-glucosyltransferase activity","secondary_identifiers":["MetaCyc:RXNQT-4328"],"termid":"GO:0103103"}


id: GO:1990030
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"Ramification of basket cell axon surrounding cell bodies, forming the characteristic pericellular baskets from which the cell class derives its name.","definition_xrefs":["NIF_Subcellular:sao413722576"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular anatomical entity","termid":"GO:0110165"},{"relation_name":"part_of","term_name":"axon","termid":"GO:0030424"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"pericellular basket","synonyms":[{"name":"peri cellular basket","type":"exact"},{"name":"peri-cellular basket","type":"exact"}],"termid":"GO:1990030"}


id: PBO:0042181
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cyclin B1 interacting protein 1 pseudogene 1","termid":"PBO:0042181"}


id: GO:0140575
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Oxidation of monodehydroascorbate outside of a membrane coupled to the reduction of L-ascorbate to monodehydro-L-ascorbate radical on the inner side of a membrane. Electrons get transferred across the membrane during the reaction.","definition_xrefs":["RHEA:66524","PMID:1623014"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity","termid":"GO:0016491"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016491"],"is_obsolete":false,"name":"transmembrane monodehydroascorbate reductase activity","termid":"GO:0140575"}


id: GO:0099001
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Entry of a symbiont's genome into the host cell through the host cell envelope via a long, flexible tail ejection system consisting a baseplate, a central tube and a terminator complex which attaches the tail to the phage capsid. Upon binding to the host cell surface, the baseplate changes its conformation and triggers genome ejection into the host cell cytoplasm. Occurs in non-enveloped prokaryotic viruses.","definition_xrefs":["PMID:22297512","GOC:dos","VZ:3952"],"direct_ancestors":[{"relation_name":"is_a","term_name":"symbiont genome ejection through host cell envelope","termid":"GO:0039678"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"symbiont genome ejection through host cell envelope, long flexible tail mechanism","synonyms":[{"name":"viral genome ejection through host cell envelope, long flexible tail mechanism","type":"related"},{"name":"viral long flexible tail ejection system","type":"exact"}],"termid":"GO:0099001"}


id: GO:0070330
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reduction of an aliphatic ring to yield an aromatic ring.","definition_xrefs":["GOC:cb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen","termid":"GO:0016712"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016491","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"aromatase activity","secondary_identifiers":["MetaCyc:UNSPECIFIC-MONOOXYGENASE-RXN","UM-BBD_enzymeID:e0551","RHEA:17149","EC:1.14.14.1"],"synonyms":[{"name":"estrogen synthetase activity","type":"narrow"}],"termid":"GO:0070330"}


id: PBO:0049646
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"H3.Y histone 2","termid":"PBO:0049646"}


id: FYPO:0004722
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A physical cellular phenotype observed in the vegetative growth phase of the life cycle in which the morphology of nuclear microtubules is normal (i.e. indistinguishable from wild type).","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal subcellular component during vegetative growth","termid":"FYPO:0001313"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0000257","FYPO:0000002","FYPO:0001320"],"is_obsolete":false,"name":"normal nuclear microtubules","synonyms":[{"name":"normal nuclear microtubule morphology","type":"exact"},{"name":"normal nuclear microtubule structure","type":"narrow"},{"name":"normal nuclear microtubules during mitotic cell cycle","type":"related"},{"name":"normal nuclear microtubules during vegetative growth","type":"exact"}],"termid":"FYPO:0004722"}


id: GO:0046186
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of acetaldehyde, a colorless, flammable liquid intermediate in the metabolism of alcohol.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"acetaldehyde metabolic process","termid":"GO:0006117"},{"relation_name":"is_a","term_name":"aldehyde biosynthetic process","termid":"GO:0046184"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"acetaldehyde biosynthetic process","synonyms":[{"name":"acetaldehyde anabolism","type":"exact"},{"name":"acetaldehyde biosynthesis","type":"exact"},{"name":"acetaldehyde formation","type":"exact"},{"name":"acetaldehyde synthesis","type":"exact"}],"termid":"GO:0046186"}


id: PBO:0046217
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"elongin C pseudogene 10","termid":"PBO:0046217"}


id: PBO:0068652
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U4 small nuclear 33, pseudogene","termid":"PBO:0068652"}


id: PR:O13977
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- jmj1 gene.","definition_xrefs":["UniProtKB:O13977","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"JmjC domain-containing protein 1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC25H1.02","synonyms":[{"name":"Spom972h-jmj1","type":"exact"},{"name":"jumonji domain-containing protein 1 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:O13977"}


id: PBO:0055160
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2579","termid":"PBO:0055160"}


id: PBO:0001208
data:
  {"annotation_feature_type":"gene","cv_name":"name_description","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Uracil Regulatable Gene","termid":"PBO:0001208"}


id: PR:P12000
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A DNA ligase 1 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO00562","PRO:DNx","PANTHER:PTHR10459:SF10"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DNA ligase 1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC20G8.01","secondary_identifiers":["UniProtKB:P12000"],"synonyms":[{"name":"DNA ligase I (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-LIG1","type":"exact"},{"name":"polydeoxyribonucleotide synthase [ATP] 1 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:P12000"}


id: PBO:0091621
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"plasma membrane arginine/lysine amino acid transmembrane transporter Cat1","termid":"PBO:0091621"}


id: PR:O94500
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"An NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO03130","PANTHER:PTHR11780:SF0","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NADH-ubiquinone oxidoreductase 51 kDa subunit homolog SPBC18E5.10, mitochondrial (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC18E5.10","secondary_identifiers":["UniProtKB:O94500"],"synonyms":[{"name":"Spom972h-NDUFV1","type":"exact"}],"termid":"PR:O94500"}


id: FYPO:0005907
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to the nucleus is normal (i.e. indistinguishable from wild type) during a cellular response to heat.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal protein localization to nucleus during vegetative growth","termid":"FYPO:0000838"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001312"},{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000138"}],"interesting_parent_ids":["FYPO:0000138","FYPO:0000002","FYPO:0000257","FYPO:0001312","FYPO:0001320"],"is_obsolete":false,"name":"normal protein localization to nucleus during cellular response to heat","synonyms":[{"name":"normal protein localisation to nucleus during cellular response to heat","type":"exact"},{"name":"normal protein localization to nucleus during cellular response to heat during mitotic cell cycle","type":"related"},{"name":"normal protein localization to nucleus during cellular response to heat during vegetative growth","type":"exact"}],"termid":"FYPO:0005907"}


id: MOD:00449
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"modification from Unimod Isotopic label","definition_xrefs":["Unimod:56","PubMed:11999733","PubMed:12175151","PubMed:11857757"],"direct_ancestors":[{"relation_name":"is_a","term_name":"(2)H deuterium tagged reagent","termid":"MOD:01431"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"acetate labeling reagent (N-term) (heavy form, +3amu)","synonyms":[{"name":"Acetate labeling reagent (N-term & K) (heavy form, +3amu)","type":"related"},{"name":"Acetyl:2H(3)","type":"related"}],"termid":"MOD:00449"}


id: PBO:0003527
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"BAR adaptor protein Hob3","termid":"PBO:0003527"}


id: PBO:0047408
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"F-box protein 46","termid":"PBO:0047408"}


id: PBO:0061222
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nucleolar and coiled-body phosphoprotein 1","termid":"PBO:0061222"}


id: GO:0070122
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the hydrolysis of an isopeptide bond. An isopeptide bond is an amide linkage between a carboxyl group of one amino acid and an amino group of another amino acid in which at least one of these groups is not on the a-carbon of one of the amino acids (for example, the link between an epsilon-amino group of a lysine molecule to a carboxyl group on a second amino acid is an isopeptide bond).","definition_xrefs":["GOC:mah","Wikipedia:Isopeptidase"],"gene_count":0,"genotype_count":0,"name":"obsolete isopeptidase activity (obsolete GO:0070122)","termid":"GO:0070122"}


id: GO:0047796
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: cyclohexane-1,3-dione + H2O = 5-oxohexanoate + H+.","definition_xrefs":["EC:3.7.1.10","RHEA:16473"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hydrolase activity, acting on acid carbon-carbon bonds, in ketonic substances","termid":"GO:0016823"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016787","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"cyclohexane-1,3-dione hydrolase activity","secondary_identifiers":["KEGG_REACTION:R03211","MetaCyc:CYCLOHEXANE-13-DIONE-HYDROLASE-RXN"],"synonyms":[{"name":"1,3-cyclohexanedione hydrolase activity","type":"related"},{"name":"cyclohexane-1,3-dione acylhydrolase (decyclizing)","type":"related"}],"termid":"GO:0047796"}


id: GO:0003407
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The progression of the neural retina over time from its initial formation to the mature structure. The neural retina is the part of the retina that contains neurons and photoreceptor cells.","definition_xrefs":["GOC:dph","GOC:tb","GOC:ascb_2009"],"direct_ancestors":[{"relation_name":"is_a","term_name":"anatomical structure development","termid":"GO:0048856"},{"relation_name":"part_of","term_name":"retina development in camera-type eye","termid":"GO:0060041"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"neural retina development","termid":"GO:0003407"}


id: PBO:0077961
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-Ala (anticodon AGC) 14-2","termid":"PBO:0077961"}


id: PBO:0027014
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abolished_positive_regulation_of_protein_kinase_activity","termid":"PBO:0027014"}


id: FYPO:0000198
data:
  {"alleles_by_uniquename":{"SJAG_04280:allele-1":{"allele_type":"amino_acid_mutation","description":"T582G","gene_uniquename":"SJAG_04280","name":"wee1-as8","uniquename":"SJAG_04280:allele-1"}},"annotation_feature_type":"genotype","cv_annotations":{"single_locus_phenotype":[{"annotations":[114055],"is_not":false,"summary":null,"term":"FYPO:0000198"}]},"cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the establishment or maintenance of actin cytoskeleton polarity is abnormal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal vegetative cell polarity","termid":"FYPO:0000026"},{"relation_name":"is_a","term_name":"abnormal actin cytoskeleton organization during vegetative growth","termid":"FYPO:0000801"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04280":null},"genotype_count":1,"genotypes_by_uniquename":{"wee1-as8-T582G-amino_acid_mutation-expression-not_assayed_or_wild_type":{"display_name":"wee1-as8(T582G aa)","display_uniquename":"wee1-as8-T582G-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04280:allele-1","expression":"Not assayed or wild type"}]}]}},"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005568"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0004803"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0004803","FYPO:0001320","FYPO:0005447","FYPO:0005568","FYPO:0000002","FYPO:0001985"],"is_obsolete":false,"name":"abnormal establishment or maintenance of actin cytoskeleton polarity during vegetative growth","references_by_uniquename":{"PMID:30664646":null},"single_locus_annotated_genes":["SJAG_04280"],"single_locus_genotype_uniquenames":["wee1-as8-T582G-amino_acid_mutation-expression-not_assayed_or_wild_type"],"synonyms":[{"name":"abnormal actin cytoskeleton polarisation during vegetative growth","type":"related"},{"name":"abnormal actin cytoskeleton polarization during vegetative growth","type":"related"},{"name":"abnormal establishment or maintenance of actin cytoskeleton polarity during mitotic cell cycle","type":"related"}],"termid":"FYPO:0000198","terms_by_termid":{"FYECO:0000005":null,"FYECO:0000137":null,"FYECO:0000338":null,"FYPO:0000198":null,"FYPO_EXT:0000001":null}}


id: GO:0042698
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The type of sexual cycle seen in females, often with physiologic changes in the endometrium that recur at regular intervals during the reproductive years.","definition_xrefs":["ISBN:0721662544"],"direct_ancestors":[{"relation_name":"is_a","term_name":"rhythmic process","termid":"GO:0048511"},{"relation_name":"is_a","term_name":"multicellular organismal reproductive process","termid":"GO:0048609"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"ovulation cycle","termid":"GO:0042698"}


id: PBO:0088850
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Golgi protein, associated with COP vesicles (predicted), DUF5427","termid":"PBO:0088850"}


id: PBO:0045616
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"double homeobox 4 like 27 (pseudogene)","termid":"PBO:0045616"}


id: GO:0015988
data:
  {"annotated_genes":["SJAG_MIT04"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[113958],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0015990"}]},"cv_name":"biological_process","definition":"The transport of protons across a membrane and against an electrochemical gradient, using energy from a source such as ATP hydrolysis, light, or electron transport.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"proton transmembrane transport","termid":"GO:1902600"}],"gene_count":1,"genes_by_uniquename":{"SJAG_MIT04":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0055085"}],"interesting_parent_ids":["GO:0055085","GO:0051179","GO:0006810","GO:0008150"],"is_obsolete":false,"name":"energy coupled proton transmembrane transport, against electrochemical gradient","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0015988","terms_by_termid":{"GO:0015990":null}}


id: PBO:0035915
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_histone_H3-K9_acetylation_at_subtelomere_during_vegetative_growth","termid":"PBO:0035915"}


id: PBO:0080006
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"USP12 pseudogene 1","termid":"PBO:0080006"}


id: PBO:0005674
data:
  {"annotation_feature_type":"gene","cv_name":"EC numbers","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"1.7.3.3","termid":"PBO:0005674"}


id: GO:0036440
data:
  {"annotated_genes":["SJAG_01922"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[73582],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004108"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: acetyl-CoA + H2O + oxaloacetate = citrate + CoA.","definition_xrefs":["RHEA:16845"],"direct_ancestors":[{"relation_name":"is_a","term_name":"acyltransferase activity, acyl groups converted into alkyl on transfer","termid":"GO:0046912"}],"gene_count":1,"genes_by_uniquename":{"SJAG_01922":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0016746"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016740","GO:0016746","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"citrate synthase activity","references_by_uniquename":{"GO_REF:0000033":null},"secondary_identifiers":["KEGG_REACTION:R00351","EC:2.3.3.16","MetaCyc:CITSYN-RXN"],"termid":"GO:0036440","terms_by_termid":{"GO:0004108":null}}


id: GO:0106190
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the translocation of hydrons linked to a decarboxylation reaction.","definition_xrefs":["GOC:hjd"],"gene_count":0,"genotype_count":0,"name":"obsolete translocase activity acting on hydrons linked to a decarboxylation reaction (obsolete GO:0106190)","secondary_identifiers":["EC:7.1.4.-"],"termid":"GO:0106190"}


id: MOD:01825
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively replaces a residue sulfhydryl hydrogen with a Thermo Scientific cysTMT6plex-128 reporter+balance group.","definition_xrefs":["PubMed:18688235","URL:http://www.piercenet.com/files/2162220.pdf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cysTMT6plex reporter+balance reagent cysteine disulfide","termid":"MOD:01821"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cysTMT6plex-128 reporter+balance reagent cysteine disulfide","synonyms":[{"name":"S-(2-{3-[2-(2,6-dimethylpiperidin-1-yl)acetamido]propanamido}ethyl)sulfanyl","type":"exact"},{"name":"cysTMT6plex","type":"related"},{"name":"cysteine-reactive Sixplex Tandem Mass Tag(TM)","type":"related"}],"termid":"MOD:01825"}


id: FYPO:0006839
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which the assembly of a protein complex at the cellular level is normal (i.e. indistinguishable from wild type).","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal cellular process","termid":"FYPO:0000627"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000257"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0000257"],"is_obsolete":false,"name":"normal protein complex assembly","synonyms":[{"name":"normal cellular protein complex assembly","type":"exact"}],"termid":"FYPO:0006839"}


id: SO:0001892
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A feature amplification of a region containing a transcription factor binding site.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulatory_region_amplification","termid":"SO:0001891"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TFBS_amplification","secondary_identifiers":["http:www.ensembl.org/info/genome/variation/predicted_data.html#consequences"],"synonyms":[{"name":"TFBS amplification ","type":"exact"},{"name":"VEP:TFBS_amplification","type":"exact"},{"name":"transcription factor binding site amplification","type":"exact"}],"termid":"SO:0001892"}


id: PBO:0043678
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"coronin 2B","termid":"PBO:0043678"}


id: PBO:0029047
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_vacuole_organization_during_nitrogen_starvation","termid":"PBO:0029047"}


id: PBO:0090507
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"WD repeat protein, DDB1 and CUL4-associated factor Dca7","termid":"PBO:0090507"}


id: GO:0007551
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. (Was not defined before being made obsolete).","definition_xrefs":["GOC:isa_complete"],"gene_count":0,"genotype_count":0,"name":"obsolete maintenance of dosage compensation (obsolete GO:0007551)","synonyms":[{"name":"maintenance of dosage compensation","type":"exact"}],"termid":"GO:0007551"}


id: PBO:0077035
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"THO complex subunit 3","termid":"PBO:0077035"}


id: PR:O14125
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPAC3A11.11c gene.","definition_xrefs":["UniProtKB:O14125","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized oxidoreductase C3A11.11c (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC3A11.11c","synonyms":[{"name":"Spom972h-SPAC3A11.11c","type":"exact"}],"termid":"PR:O14125"}


id: GO:0016883
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. A grouping term for carbon-nitrogen ligases that cannot be more accurately categorized.","definition_xrefs":["GOC:ai"],"gene_count":0,"genotype_count":0,"name":"obsolete other carbon-nitrogen ligase activity (obsolete GO:0016883)","synonyms":[{"name":"other carbon-nitrogen ligase activity","type":"exact"}],"termid":"GO:0016883"}


id: PBO:0073276
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"septin 10 pseudogene 1","termid":"PBO:0073276"}


id: GO:0002842
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate, or extent of a T cell mediated immune response to tumor cell.","definition_xrefs":["GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of T cell mediated immunity","termid":"GO:0002711"},{"relation_name":"is_a","term_name":"positive regulation of immune response to tumor cell","termid":"GO:0002839"},{"relation_name":"is_a","term_name":"regulation of T cell mediated immune response to tumor cell","termid":"GO:0002840"},{"relation_name":"positively_regulates","term_name":"T cell mediated immune response to tumor cell","termid":"GO:0002424"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of T cell mediated immune response to tumor cell","synonyms":[{"name":"activation of T cell mediated immune response to tumor cell","type":"narrow"},{"name":"positive regulation of T cell mediated immune response to tumour cell","type":"exact"},{"name":"positive regulation of T lymphocyte mediated immune response to tumor cell","type":"exact"},{"name":"positive regulation of T-cell mediated immune response to tumor cell","type":"exact"},{"name":"positive regulation of T-lymphocyte mediated immune response to tumor cell","type":"exact"},{"name":"stimulation of T cell mediated immune response to tumor cell","type":"narrow"},{"name":"up regulation of T cell mediated immune response to tumor cell","type":"exact"},{"name":"up-regulation of T cell mediated immune response to tumor cell","type":"exact"},{"name":"upregulation of T cell mediated immune response to tumor cell","type":"exact"}],"termid":"GO:0002842"}


id: PBO:0049999
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"histone cell cycle regulator","termid":"PBO:0049999"}


id: PBO:0081217
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ZMIZ1 antisense RNA 1","termid":"PBO:0081217"}


id: GO:0009600
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The series of events in which a stimulus from a nematode is received and converted into a molecular signal.","definition_xrefs":["GOC:hb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"detection of other organism","termid":"GO:0098543"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"detection of nematode","synonyms":[{"name":"perception of nematode","type":"related"}],"termid":"GO:0009600"}


id: FYPO:0005002
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which a cell is elongated, and the nucleus undergoes oscillatory movement around its normal location.","definition_xrefs":["PomBase:mah","PMID:16611238","PomBase:vw"],"direct_ancestors":[{"relation_name":"is_a","term_name":"elongated vegetative cell","termid":"FYPO:0001122"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"has_part","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"has_part","termid":"FYPO:0000005"},{"rel_name":"has_part","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000005"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0001985","FYPO:0000005","FYPO:0000002"],"is_obsolete":false,"name":"elongated vegetative cell with oscillating nucleus","synonyms":[{"name":"elongated cell with oscillating nucleus during vegetative growth","type":"exact"},{"name":"elongated vegetative cell with oscillating nucleus during mitotic cell cycle","type":"related"}],"termid":"FYPO:0005002"}


id: PBO:0059013
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"membrane magnesium transporter 1","termid":"PBO:0059013"}


id: PBO:0052019
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"jumonji domain containing 8","termid":"PBO:0052019"}


id: PBO:0069905
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 1196, pseudogene","termid":"PBO:0069905"}


id: GO:0120201
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"Stack of disc membranes located inside a cone photoreceptor outer segment, and containing densely packed molecules of opsin photoreceptor proteins that traverse the lipid bilayer. Cone disc membranes arise as evaginations of the ciliary membrane during the development of the cone outer segment and remain contiguous with the ciliary membrane.","definition_xrefs":["PMID:26574505","GOC:pde","PMID:19501669","PMID:6771304","GOC:krc"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ciliary membrane","termid":"GO:0060170"},{"relation_name":"is_a","term_name":"photoreceptor disc membrane","termid":"GO:0097381"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005886"}],"interesting_parent_ids":["GO:0005575","GO:0005886"],"is_obsolete":false,"name":"cone photoreceptor disc membrane","termid":"GO:0120201"}


id: PBO:0012311
data:
  {"annotation_feature_type":"gene","cv_name":"subunit_composition","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"homotrimeric","termid":"PBO:0012311"}


id: PBO:0091441
data:
  {"annotation_feature_type":"gene","cv_name":"warning","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"does not appear to be the ortholog of S. cerevisiae CYB2, missing the N-term cytochrome B2 domain","termid":"PBO:0091441"}


id: PBO:0030671
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abolished_protein_localization_to_heterochromatin_during_vegetative_growth","termid":"PBO:0030671"}


id: GO:0046452
data:
  {"annotated_genes":["SJAG_00529","SJAG_01198"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[70839],"is_not":false,"summary":null,"term":"GO:0046452"},{"annotations":[68467],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006761"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways involving dihydrofolate, the dihydroxylated derivative of folate.","definition_xrefs":["ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"folic acid-containing compound metabolic process","termid":"GO:0006760"},{"relation_name":"is_a","term_name":"dicarboxylic acid metabolic process","termid":"GO:0043648"}],"gene_count":2,"genes_by_uniquename":{"SJAG_00529":null,"SJAG_01198":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0008150","GO:0044281"],"is_obsolete":false,"name":"dihydrofolate metabolic process","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000108":null},"synonyms":[{"name":"dihydrofolate metabolism","type":"exact"},{"name":"dihydrofolate reduction","type":"narrow"}],"termid":"GO:0046452","terms_by_termid":{"GO:0006761":null,"GO:0046452":null}}


