# terms

id: PBO:0069487
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 754, pseudogene","termid":"PBO:0069487"}


id: PBO:0038552
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ABHD17A pseudogene 7","termid":"PBO:0038552"}


id: PBO:0029991
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-growth_auxotrophic_for_thiamine","termid":"PBO:0029991"}


id: PBO:0057393
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 548f-1","termid":"PBO:0057393"}


id: PBO:0054874
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2288","termid":"PBO:0054874"}


id: FYPO:0004842
data:
  {"alleles_by_uniquename":{"SJAG_01745:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_01745","name":"lem2delta","uniquename":"SJAG_01745:allele-1"}},"annotation_feature_type":"genotype","cv_annotations":{"single_locus_phenotype":[{"annotations":[114216],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0003657"}]},"cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in which a protein that is not normally found in the cytoplasm is observed there.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mislocalized protein","termid":"FYPO:0003452"}],"gene_count":1,"genes_by_uniquename":{"SJAG_01050":null,"SJAG_01745":null},"genotype_count":1,"genotypes_by_uniquename":{"lem2delta":{"display_name":"lem2delta","display_uniquename":"lem2delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01745:allele-1","expression":"Null"}]}]}},"interesting_parent_details":[{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"output_of","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0001985","FYPO:0000138","FYPO:0000002"],"is_obsolete":false,"name":"protein mislocalized to cytoplasm","references_by_uniquename":{"PMID:32109380":null},"single_locus_annotated_genes":["SJAG_01745"],"single_locus_genotype_uniquenames":["lem2delta"],"synonyms":[{"name":"ectopic protein localization to cytoplasm","type":"exact"},{"name":"protein mislocalised to cytoplasm","type":"exact"}],"termid":"FYPO:0004842","terms_by_termid":{"FYECO:0000137":null,"FYPO:0003657":null,"FYPO_EXT:0000001":null}}


id: GO:0019526
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of pentitols, any alditol with a chain of five carbon atoms in the molecule.","definition_xrefs":["ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"alditol biosynthetic process","termid":"GO:0019401"},{"relation_name":"is_a","term_name":"pentitol metabolic process","termid":"GO:0019519"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0005975"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0005975","GO:0008150","GO:0044281"],"is_obsolete":false,"name":"pentitol biosynthetic process","synonyms":[{"name":"pentitol anabolism","type":"exact"},{"name":"pentitol biosynthesis","type":"exact"},{"name":"pentitol formation","type":"exact"},{"name":"pentitol synthesis","type":"exact"}],"termid":"GO:0019526"}


id: PBO:0043277
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"C-type lectin domain family 3 member B","termid":"PBO:0043277"}


id: GO:0072213
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of the metanephric capsule over time, from its formation to the mature structure. The metanephric capsule is the tough fibrous layer surrounding the metanephros, covered in a thick layer of perinephric adipose tissue. It provides some protection from trauma and damage.","definition_xrefs":["GOC:mtg_kidney_jan10"],"direct_ancestors":[{"relation_name":"is_a","term_name":"renal capsule development","termid":"GO:0072127"},{"relation_name":"part_of","term_name":"metanephros development","termid":"GO:0001656"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"metanephric capsule development","termid":"GO:0072213"}


id: GO:0160112
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A structural network of microtubule inner proteins (MIPs) located inside the lumen of the B tubule of the axonemal microtubule doublet that helps stabilize the B tubule.","definition_xrefs":["PMID:37295417","PMID:29430673","GOC:krc"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular anatomical entity","termid":"GO:0110165"},{"relation_name":"part_of","term_name":"A axonemal microtubule","termid":"GO:0097649"},{"relation_name":"part_of","term_name":"axonemal microtubule doublet inner sheath","termid":"GO:0160110"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"part_of","termid":"GO:0015630"}],"interesting_parent_ids":["GO:0005737","GO:0005575","GO:0015630"],"is_obsolete":false,"name":"axonemal B tubule inner sheath","termid":"GO:0160112"}


id: PBO:0055180
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2604","termid":"PBO:0055180"}


id: RO:0002453
data:
  {"annotation_feature_type":"gene","cv_name":"relationship","direct_ancestors":[{"relation_name":"is_a","term_name":"symbiotically_interacts_with","termid":"RO:0002440"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"host_of","termid":"RO:0002453"}


id: PBO:0056671
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mediator complex subunit 29","termid":"PBO:0056671"}


id: PBO:0043255
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"claudin 14","termid":"PBO:0043255"}


id: PBO:0075384
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SOX30 pseudogene 1","termid":"PBO:0075384"}


id: GO:0035999
data:
  {"annotated_genes":["SJAG_03712","SJAG_01466","SJAG_01616","SJAG_04156","SJAG_01766","SJAG_00106","SJAG_03914","SJAG_01126"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[70630,71582,72125,74700,75431,86761,89886,100018],"is_not":false,"summary":null,"term":"GO:0035999"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways by which one-carbon (C1) units are transferred between tetrahydrofolate molecules, to synthesise other tetrahydrofolate molecules.","definition_xrefs":["GOC:yaf","PMID:1825999"],"direct_ancestors":[{"relation_name":"is_a","term_name":"one-carbon metabolic process","termid":"GO:0006730"},{"relation_name":"is_a","term_name":"tetrahydrofolate metabolic process","termid":"GO:0046653"}],"gene_count":8,"genes_by_uniquename":{"SJAG_00106":null,"SJAG_01126":null,"SJAG_01466":null,"SJAG_01616":null,"SJAG_01766":null,"SJAG_03712":null,"SJAG_03914":null,"SJAG_04156":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0044281"],"is_obsolete":false,"name":"tetrahydrofolate interconversion","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"secondary_identifiers":["MetaCyc:PWY-2201"],"termid":"GO:0035999","terms_by_termid":{"GO:0035999":null}}


id: GO:0038162
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The series of molecular signals initiated by erythropoietin (EPO) binding to the erythropoietin receptor (EPO-R) on the surface of a target cell, and ending with the regulation of a downstream cellular process, e.g. transcription.","definition_xrefs":["PMID:12489509","GOC:nhn"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cytokine-mediated signaling pathway","termid":"GO:0019221"},{"relation_name":"part_of","term_name":"cellular response to erythropoietin","termid":"GO:0036018"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"erythropoietin-mediated signaling pathway","synonyms":[{"name":"EPO-R signaling pathway","type":"exact"},{"name":"erythropoietin receptor signaling pathway","type":"exact"}],"termid":"GO:0038162"}


id: PBO:0081809
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein 736 pseudogene 2, Y-linked","termid":"PBO:0081809"}


id: PBO:0060924
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"neurofibromin 1 pseudogene 11","termid":"PBO:0060924"}


id: PBO:0075628
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"shadow of prion protein pseudogene 1","termid":"PBO:0075628"}


id: GO:0018132
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The chemical reactions and pathways resulting in the formation of a peptidyl serine-peptidyl cysteine cross-link by the condensation of a serine hydroxyl with the carbonyl of the preceding residue and alpha-beta dehydrogenation.","definition_xrefs":["RESID:AA0238","PMID:8895467"],"gene_count":0,"genotype_count":0,"name":"obsolete peptide cross-linking via L-cysteine oxazolecarboxylic acid (obsolete GO:0018132)","termid":"GO:0018132"}


id: FYPO:0002562
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to the actomyosin contractile ring begins later than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal protein localization to actomyosin contractile ring","termid":"FYPO:0002560"},{"relation_name":"is_a","term_name":"delayed onset of protein localization to cell division site","termid":"FYPO:0003946"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000032"},{"rel_name":"is_a","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000002","FYPO:0000138","FYPO:0001320","FYPO:0000032","FYPO:0000631","FYPO:0005447"],"is_obsolete":false,"name":"delayed onset of protein localization to actomyosin contractile ring","synonyms":[{"name":"delayed onset of protein localisation to actomyosin contractile ring","type":"exact"},{"name":"delayed onset of protein localization to actomyosin contractile ring during mitotic cell cycle","type":"related"},{"name":"delayed onset of protein localization to actomyosin contractile ring during vegetative growth","type":"exact"},{"name":"delayed onset of protein localization to actomyosin contractile ring involved in mitotic cytokinesis","type":"exact"},{"name":"delayed onset of protein localization to contractile ring","type":"exact"},{"name":"delayed onset of protein localization to cytokinetic contractile ring","type":"exact"},{"name":"delayed onset of protein localization to mitotic contractile ring","type":"exact"},{"name":"delayed onset of protein recruitment to actomyosin contractile ring","type":"related"},{"name":"delayed protein localization to actomyosin contractile ring","type":"exact"}],"termid":"FYPO:0002562"}


id: FYPO:0000781
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which transcription occurs to a lower extent than normal. All genes, or a specific subset of genes, may be affected.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"has_output","term_name":"decreased RNA level during vegetative growth","termid":"FYPO:0001117"},{"relation_name":"is_a","term_name":"decreased transcription","termid":"FYPO:0002876"},{"relation_name":"is_a","term_name":"abnormal transcription during vegetative growth","termid":"FYPO:0004064"},{"relation_name":"is_a","term_name":"abnormal regulation of transcription during vegetative growth","termid":"FYPO:0004527"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0006551"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000294"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0001985","FYPO:0000002","FYPO:0006551","FYPO:0000294","FYPO:0001320"],"is_obsolete":false,"name":"decreased transcription during vegetative growth","synonyms":[{"name":"decreased transcription during mitotic cell cycle","type":"related"},{"name":"reduced transcription during vegetative growth","type":"exact"}],"termid":"FYPO:0000781"}


id: PBO:0052080
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"katanin regulatory subunit B1 like 1 pseudogene 5","termid":"PBO:0052080"}


id: GO:0019240
data:
  {"annotated_genes":["SJAG_00635","SJAG_00964","SJAG_00412"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[71014,71523,77091],"is_not":false,"summary":null,"term":"GO:0019240"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of citrulline, N5-carbamoyl-L-ornithine, an alpha amino acid not found in proteins.","definition_xrefs":["ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"citrulline metabolic process","termid":"GO:0000052"},{"relation_name":"is_a","term_name":"non-proteinogenic amino acid biosynthetic process","termid":"GO:0170043"},{"relation_name":"is_a","term_name":"alpha-amino acid biosynthetic process","termid":"GO:1901607"}],"gene_count":3,"genes_by_uniquename":{"SJAG_00412":null,"SJAG_00635":null,"SJAG_00964":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0006520"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0044281","GO:0006520","GO:0008150"],"is_obsolete":false,"name":"citrulline biosynthetic process","references_by_uniquename":{"GO_REF:0000033":null},"secondary_identifiers":["MetaCyc:CITRULBIO-PWY"],"synonyms":[{"name":"citrulline anabolism","type":"exact"},{"name":"citrulline biosynthesis","type":"exact"},{"name":"citrulline formation","type":"exact"},{"name":"citrulline synthesis","type":"exact"}],"termid":"GO:0019240","terms_by_termid":{"GO:0019240":null}}


id: PBO:0073325
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"serpin family A member 1","termid":"PBO:0073325"}


id: PBO:0059041
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"matrix metallopeptidase 28","termid":"PBO:0059041"}


id: PBO:0065910
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RAB GTPase activating protein 1 like","termid":"PBO:0065910"}


id: GO:0042448
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving progesterone, a steroid hormone produced in the ovary which prepares and maintains the uterus for pregnancy. Also found in plants.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"C21-steroid hormone metabolic process","termid":"GO:0008207"},{"relation_name":"is_a","term_name":"cellular ketone metabolic process","termid":"GO:0042180"},{"relation_name":"is_a","term_name":"olefinic compound metabolic process","termid":"GO:0120254"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006629"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006629","GO:0044281","GO:0008150"],"is_obsolete":false,"name":"progesterone metabolic process","synonyms":[{"name":"progesterone metabolism","type":"exact"}],"termid":"GO:0042448"}


id: GO:0016832
data:
  {"annotated_genes":["SJAG_04242","SJAG_00815","SJAG_01310","SJAG_01455","SJAG_02450","SJAG_02230","SJAG_03373","SJAG_00706"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[102342],"is_not":false,"summary":null,"term":"GO:0016832"},{"annotations":[106940],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0106359"},{"annotations":[100161],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004150"},{"annotations":[109660],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0097023"},{"annotations":[72498,71005],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004332"},{"annotations":[98748],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0033984"},{"annotations":[71856],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0008732"}]},"cv_name":"molecular_function","definition":"Catalysis of the cleavage of a C-C bond in a molecule containing a hydroxyl group and a carbonyl group to form two smaller molecules, each being an aldehyde or a ketone.","definition_xrefs":["GOC:curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"carbon-carbon lyase activity","termid":"GO:0016830"}],"gene_count":8,"genes_by_uniquename":{"SJAG_00706":null,"SJAG_00815":null,"SJAG_01310":null,"SJAG_01455":null,"SJAG_02230":null,"SJAG_02450":null,"SJAG_03373":null,"SJAG_04242":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016829"}],"interesting_parent_ids":["GO:0003674","GO:0016829","GO:0003824"],"is_obsolete":false,"name":"aldehyde-lyase activity","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"secondary_identifiers":["EC:4.1.2.-","GO:0016228","Reactome:R-HSA-200651","Reactome:R-HSA-71249","Reactome:R-HSA-200735"],"synonyms":[{"name":"aldolase activity","type":"broad"}],"termid":"GO:0016832","terms_by_termid":{"GO:0004150":null,"GO:0004332":null,"GO:0008732":null,"GO:0016832":null,"GO:0033984":null,"GO:0097023":null,"GO:0106359":null}}


id: PBO:0001352
data:
  {"annotation_feature_type":"gene","cv_name":"misc","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"swi5delta rhp57delta double mutant showed a repair profile very similar to that to the rhp51delta single mutant","termid":"PBO:0001352"}


id: PBO:0063126
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"poly(ADP-ribose) polymerase family member 11","termid":"PBO:0063126"}


id: PBO:0056828
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"maltase-glucoamylase 2 (putative)","termid":"PBO:0056828"}


id: PBO:0071731
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L39 pseudogene 29","termid":"PBO:0071731"}


id: PBO:0004127
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Usp (universal stress protein) family protein","termid":"PBO:0004127"}


id: PBO:0072391
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RPS27A pseudogene 17","termid":"PBO:0072391"}


id: PBO:0002250
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"spindle pole body protein Ppc89","termid":"PBO:0002250"}


id: PBO:0042024
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"coiled-coil domain containing 82","termid":"PBO:0042024"}


id: GO:0010101
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which the anatomical structures of the post-embryonic root are generated and organized. The post-embryonic root is the root formed after the embryonic phase has been completed.","definition_xrefs":["GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"root morphogenesis","termid":"GO:0010015"},{"relation_name":"is_a","term_name":"post-embryonic plant organ morphogenesis","termid":"GO:0090697"},{"relation_name":"part_of","term_name":"post-embryonic root development","termid":"GO:0048528"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"post-embryonic root morphogenesis","termid":"GO:0010101"}


id: PBO:0003943
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"siderophore-iron biosynthesis protein (predicted)","termid":"PBO:0003943"}


id: GO:0008775
data:
  {"annotated_genes":["SJAG_02769","SJAG_02985"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[64977,86897],"is_not":false,"summary":null,"term":"GO:0008775"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: acyl-CoA + acetate = a fatty acid anion + acetyl-CoA.","definition_xrefs":["EC:2.8.3.8"],"direct_ancestors":[{"relation_name":"is_a","term_name":"CoA-transferase activity","termid":"GO:0008410"}],"gene_count":2,"genes_by_uniquename":{"SJAG_02769":null,"SJAG_02985":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0016782"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003824","GO:0016782","GO:0003674","GO:0016740"],"is_obsolete":false,"name":"acetate CoA-transferase activity","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000107":null},"secondary_identifiers":["Reactome:R-HSA-2066788","RHEA:13381","UM-BBD_enzymeID:e0012","MetaCyc:ACECOATRANS-RXN"],"synonyms":[{"name":"acetate coenzyme A-transferase activity","type":"related"},{"name":"acetyl-CoA:acetoacetate CoA transferase activity","type":"related"},{"name":"acyl-CoA:acetate CoA-transferase activity","type":"related"},{"name":"butyryl CoA:acetate CoA transferase activity","type":"related"},{"name":"butyryl coenzyme A transferase activity","type":"related"},{"name":"succinyl-CoA:acetate CoA transferase activity","type":"related"}],"termid":"GO:0008775","terms_by_termid":{"GO:0008775":null}}


id: PBO:0091087
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"origin recognition complex subunit Orc3","termid":"PBO:0091087"}


id: GO:0051884
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id: GO:0046942
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id: PBO:0038311
data:
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id: FYPO:0003500
data:
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id: GO:1904864
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id: PATO:0000514
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id: PBO:0061885
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id: GO:0048656
data:
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id: PBO:0052249
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id: PBO:0016965
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id: PBO:0088240
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id: PBO:0005725
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id: PBO:0090691
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id: GO:0060690
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id: RO:0002510
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id: MOD:00218
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id: PBO:0071854
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  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein S2 pseudogene 49","termid":"PBO:0071854"}


id: PBO:0073569
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"shisa family member 2","termid":"PBO:0073569"}


id: PBO:0077480
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transmembrane protein 200C","termid":"PBO:0077480"}


id: PBO:0029054
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id: SO:0000521
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one V-gene and one VDJ-gene.","direct_ancestors":[{"relation_name":"has_part","term_name":"V_gene_segment","termid":"SO:0000466"},{"relation_name":"has_part","term_name":"VDJ_gene_segment","termid":"SO:0000574"},{"relation_name":"is_a","term_name":"vertebrate_immunoglobulin_T_cell_receptor_rearranged_gene_cluster","termid":"SO:0000938"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"V_VDJ_cluster","synonyms":[{"name":"V VDJ cluster","type":"exact"},{"name":"V-(VDJ)-CLUSTER","type":"exact"}],"termid":"SO:0000521"}


id: GO:0051331
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The cell cycle 'gap' phase which is the interval between the completion of DNA synthesis and the beginning of DNA segregation by meiosis.","definition_xrefs":["GOC:mtg_cell_cycle"],"direct_ancestors":[{"relation_name":"is_a","term_name":"G2 phase","termid":"GO:0051319"},{"relation_name":"part_of","term_name":"meiotic interphase","termid":"GO:0051328"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0051328"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0051328","GO:0008150"],"is_obsolete":false,"name":"meiotic G2 phase","synonyms":[{"name":"G2 phase of meiotic cell cycle","type":"exact"}],"termid":"GO:0051331"}


id: PBO:0041041
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"BRCA2 DNA repair associated","termid":"PBO:0041041"}


id: PBO:0017051
data:
  {"annotation_feature_type":"gene","cv_name":"complementation","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"functionally complements S. cerevisiae STE20","termid":"PBO:0017051"}


id: PBO:0090150
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"LEM domain nuclear inner membrane protein Man1, Sad1 interacting factor","termid":"PBO:0090150"}


id: GO:0070384
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of the Harderian gland over time, from its formation to the mature structure. The Harderian gland is an anterior orbital structure usually associated with the nictitating membrane, and produces and secretes a variety of substances to the eye, depending upon the species.","definition_xrefs":["PMID:16856596","GOC:hjd","PMID:7559104"],"direct_ancestors":[{"relation_name":"is_a","term_name":"gland development","termid":"GO:0048732"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"Harderian gland development","termid":"GO:0070384"}


id: GO:0051653
data:
  {"annotated_genes":["SJAG_02737","SJAG_02695"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[111948,92336],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0000132"}]},"cv_name":"biological_process","definition":"Any process in which is the spindle is transported to, and/or maintained in, a specific location.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell cycle process","termid":"GO:0022402"},{"relation_name":"is_a","term_name":"organelle localization","termid":"GO:0051640"}],"gene_count":2,"genes_by_uniquename":{"SJAG_02695":null,"SJAG_02737":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0007049"},{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0007049","GO:0051179","GO:0008150"],"is_obsolete":false,"name":"spindle localization","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"establishment and maintenance of spindle localization","type":"exact"},{"name":"spindle localisation","type":"exact"}],"termid":"GO:0051653","terms_by_termid":{"GO:0000132":null}}


id: FYPO:0002399
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A physical cellular phenotype in which the amount, distribution, or morphology of all or part of the microtubule cytoskeleton is abnormal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal cytoskeleton","termid":"FYPO:0002397"},{"relation_name":"output_of","term_name":"abnormal microtubule cytoskeleton organization","termid":"FYPO:0000054"}],"gene_count":0,"genotype_count":0,"in_subsets":["fypo_slim"],"interesting_parent_details":[{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"output_of","termid":"FYPO:0000054"},{"rel_name":"output_of","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000002","FYPO:0000054","FYPO:0005447"],"is_obsolete":false,"name":"abnormal microtubule cytoskeleton","synonyms":[{"name":"abnormal microtubule cytoskeleton physical object quality","type":"exact"},{"name":"disorganized microtubule cytoskeleton","type":"related"}],"termid":"FYPO:0002399"}


id: PBO:0047489
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ferredoxin reductase","termid":"PBO:0047489"}


id: PBO:0075615
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"signal peptide peptidase like 2A","termid":"PBO:0075615"}


id: PBO:0045628
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"double homeobox 4 like 40 (pseudogene)","termid":"PBO:0045628"}


id: PBO:0016076
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"serine/threonine protein kinase Hal4","termid":"PBO:0016076"}


id: FYPO:0001323
data:
  {"alleles_by_uniquename":{"SJAG_00426:allele-1":{"allele_type":"amino_acid_mutation","description":"P363S","gene_uniquename":"SJAG_00426","name":"bbl1-P363S","uniquename":"SJAG_00426:allele-1"},"SJAG_01956:allele-1":{"allele_type":"amino_acid_mutation","description":"E405K ts","gene_uniquename":"SJAG_01956","name":"nuc2-1051","uniquename":"SJAG_01956:allele-1"},"SJAG_02621:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_02621","name":"ago1delta","uniquename":"SJAG_02621:allele-1"},"SJAG_03118:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_03118","name":"leo1delta","uniquename":"SJAG_03118:allele-1"},"SJAG_03351:allele-1":{"allele_type":"amino_acid_mutation","description":"A186T ts","gene_uniquename":"SJAG_03351","name":"cut23-415","uniquename":"SJAG_03351:allele-1"},"SJAG_03575:allele-1":{"allele_type":"amino_acid_mutation","description":"E548K ts","gene_uniquename":"SJAG_03575","name":"apc2-361","uniquename":"SJAG_03575:allele-1"},"SJAG_03689:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_03689","name":"dcr1delta","uniquename":"SJAG_03689:allele-1"},"SJAG_04697:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_04697","name":"gms1delta","uniquename":"SJAG_04697:allele-1"}},"annotation_feature_type":"genotype","cv_annotations":{"multi_locus_phenotype":[{"annotations":[114418,114420],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0004982"},{"annotations":[114421,114419],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0004573"}],"single_locus_phenotype":[{"annotations":[114404],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0004205"},{"annotations":[114325],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0003727"},{"annotations":[114188],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0004695"},{"annotations":[114187],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0002227"},{"annotations":[114406],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0004982"},{"annotations":[114546,114547,114548],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0001327"},{"annotations":[114405],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0004574"}]},"cv_name":"fission_yeast_phenotype","definition":"A cell phenotype in which the amount of a specific substance measured in a cell differs from normal when the cell is in the vegetative growth phase of the life cycle.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"altered level of substance in cell","termid":"FYPO:0000989"},{"relation_name":"is_a","term_name":"abnormal cellular physical quality phenotype during vegetative growth","termid":"FYPO:0004639"}],"gene_count":8,"genes_by_uniquename":{"SJAG_00426":null,"SJAG_01956":null,"SJAG_02621":null,"SJAG_03118":null,"SJAG_03198":null,"SJAG_03351":null,"SJAG_03575":null,"SJAG_03689":null,"SJAG_04697":null},"genotype_count":8,"genotypes_by_uniquename":{"ago1delta__leo1delta":{"display_name":"ago1delta 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growth","references_by_uniquename":{"PMID:23786411":null,"PMID:25318672":null,"PMID:35226668":null,"PMID:36058798":null},"single_locus_annotated_genes":["SJAG_03575","SJAG_03689","SJAG_00426","SJAG_01956","SJAG_03351","SJAG_04697"],"single_locus_genotype_uniquenames":["apc2-361-E548K_ts-amino_acid_mutation-expression-not_assayed_or_wild_type","bbl1-P363S-P363S-amino_acid_mutation-expression-not_assayed_or_wild_type","gms1delta","dcr1delta","nuc2-1051-E405K_ts-amino_acid_mutation-expression-not_assayed_or_wild_type","cut23-415-A186T_ts-amino_acid_mutation-expression-not_assayed_or_wild_type"],"synonyms":[{"name":"abnormal level of substance in cell during vegetative growth","type":"exact"},{"name":"altered level of substance in cell during mitotic cell cycle","type":"related"}],"termid":"FYPO:0001323","terms_by_termid":{"FYECO:0000004":null,"FYECO:0000005":null,"FYECO:0000006":null,"FYECO:0000137":null,"FYECO:0000162":null,"FYPO:0001327":null,"FYPO:0002227":null,"FYPO:0003727":null,"FYPO:0004205":null,"FYPO:0004573":null,"FYPO:0004574":null,"FYPO:0004695":null,"FYPO:0004982":null,"FYPO_EXT:0000001":null}}


id: PATO:0002441
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A surface feature shape in which the bearer's surface is highly topographical with ridges, pits, rugosity or other surface structures.","definition_xrefs":["PATOC:AD"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ornamentation","termid":"PATO:0002440"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ornamented","termid":"PATO:0002441"}


id: PATO:0001790
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A density which is lower relative to the normal or average.","definition_xrefs":["PATOC:GVG"],"direct_ancestors":[{"relation_name":"decreased_in_magnitude_relative_to","term_name":"normal","termid":"PATO:0000461"},{"relation_name":"is_a","term_name":"dense","termid":"PATO:0001164"},{"relation_name":"is_a","term_name":"decreased object quality","termid":"PATO:0002303"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"decreased mass density","synonyms":[{"name":"low density","type":"exact"}],"termid":"PATO:0001790"}


id: PBO:0044587
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"debranching RNA lariats 1","termid":"PBO:0044587"}


id: PBO:0027975
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_cysteine-type_peptidase_activity","termid":"PBO:0027975"}


id: GO:0016040
data:
  {"annotated_genes":["SJAG_04054"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[71889],"is_not":false,"summary":null,"term":"GO:0016040"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: 2 L-glutamate + NAD+ = 2-oxoglutarate + L-glutamine + H+ + NADH.","definition_xrefs":["EC:1.4.1.14","RHEA:13753"],"direct_ancestors":[{"relation_name":"is_a","term_name":"glutamate synthase activity, NAD(P)H as acceptor","termid":"GO:0045181"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04054":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016491","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"glutamate synthase (NADH) activity","references_by_uniquename":{"GO_REF:0000033":null},"secondary_identifiers":["MetaCyc:GLUTAMATE-SYNTHASE-NADH-RXN","KEGG_REACTION:R00093"],"synonyms":[{"name":"GOGAT activity","type":"broad"},{"name":"L-glutamate synthase (NADH)","type":"related"},{"name":"L-glutamate synthase activity","type":"broad"},{"name":"L-glutamate synthetase activity","type":"broad"},{"name":"L-glutamate:NAD+ oxidoreductase (transaminating)","type":"related"},{"name":"NADH-dependent glutamate synthase activity","type":"related"},{"name":"NADH-glutamate synthase activity","type":"related"},{"name":"NADH: GOGAT","type":"related"},{"name":"glutamate (reduced nicotinamide adenine dinucleotide) synthase","type":"related"}],"termid":"GO:0016040","terms_by_termid":{"GO:0016040":null}}


id: PBO:0018141
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial ribosomal protein subunit L20, Mrpl20 (predicted)","termid":"PBO:0018141"}


id: PBO:0079612
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ubiquitin conjugating enzyme E2 I","termid":"PBO:0079612"}


id: PBO:0028521
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_histone_H3-K9_acetylation","termid":"PBO:0028521"}


id: PBO:0053820
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1081","termid":"PBO:0053820"}


id: PBO:0050328
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"heterogeneous nuclear ribonucleoprotein A1 pseudogene 30","termid":"PBO:0050328"}


id: PBO:0004255
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase family or domain","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"HIT family","termid":"PBO:0004255"}


id: PBO:0018138
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NMS complex subunit, Spc105/KNL-1 family member, blinkin, Spc7","termid":"PBO:0018138"}


id: PBO:0081533
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein 443","termid":"PBO:0081533"}


id: PBO:0001481
data:
  {"annotation_feature_type":"gene","cv_name":"EC numbers","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"2.3.1.26","termid":"PBO:0001481"}


id: PATO:0001533
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A color pattern inhering in a bearer by virtue of bearer's having two or more hues or degrees of saturation.","definition_xrefs":["PATOC:GVG"],"direct_ancestors":[{"relation_name":"is_a","term_name":"color pattern","termid":"PATO:0000019"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"multi-colored","synonyms":[{"name":"variegated","type":"exact"}],"termid":"PATO:0001533"}


id: PBO:0027203
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_nuclear_microtubules","termid":"PBO:0027203"}


id: SO:0002370
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A scaRNA possessing a box H/ACA sequence motif, guiding the pseudouridylation of snRNAs.","definition_xrefs":["PMID:17099227","PMID:24659245"],"direct_ancestors":[{"relation_name":"is_a","term_name":"scaRNA","termid":"SO:0002095"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"H_ACA_box_scaRNA","synonyms":[{"name":"H/ACA scaRNA","type":"exact"}],"termid":"SO:0002370"}


id: PBO:0058167
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 4462","termid":"PBO:0058167"}


id: PBO:0081177
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger FYVE-type containing 27","termid":"PBO:0081177"}


id: PBO:0110346
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CDCA7 pseudogene 2","termid":"PBO:0110346"}


id: GO:1901621
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of smoothened signaling pathway involved in dorsal/ventral neural tube patterning.","definition_xrefs":["GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of smoothened signaling pathway","termid":"GO:0045879"},{"relation_name":"is_a","term_name":"regulation of smoothened signaling pathway involved in dorsal/ventral neural tube patterning","termid":"GO:1901620"},{"relation_name":"negatively_regulates","term_name":"smoothened signaling pathway involved in dorsal/ventral neural tube patterning","termid":"GO:0060831"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"negatively_regulates","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"negative regulation of smoothened signaling pathway involved in dorsal/ventral neural tube patterning","synonyms":[{"name":"down regulation of hedgehog signaling pathway involved in dorsal/ventral neural tube patterning","type":"exact"},{"name":"down regulation of hh signaling pathway involved in dorsal/ventral neural tube patterning","type":"exact"},{"name":"down regulation of smoothened signaling pathway involved in dorsal/ventral neural tube patterning","type":"exact"},{"name":"down regulation of smoothened signalling pathway involved in dorsal/ventral neural tube patterning","type":"exact"},{"name":"down-regulation of hedgehog signaling pathway involved in dorsal/ventral neural tube patterning","type":"exact"},{"name":"down-regulation of hh signaling pathway involved in dorsal/ventral neural tube patterning","type":"exact"},{"name":"down-regulation of smoothened signaling pathway involved in dorsal/ventral neural tube patterning","type":"exact"},{"name":"down-regulation of smoothened signalling pathway involved in dorsal/ventral neural tube patterning","type":"exact"},{"name":"downregulation of hedgehog signaling pathway involved in dorsal/ventral neural tube patterning","type":"exact"},{"name":"downregulation of hh signaling pathway involved in dorsal/ventral neural tube patterning","type":"exact"},{"name":"downregulation of smoothened signaling pathway involved in dorsal/ventral neural tube patterning","type":"exact"},{"name":"downregulation of smoothened signalling pathway involved in dorsal/ventral neural tube patterning","type":"exact"},{"name":"inhibition of hedgehog signaling pathway involved in dorsal/ventral neural tube patterning","type":"narrow"},{"name":"inhibition of hh signaling pathway involved in dorsal/ventral neural tube patterning","type":"narrow"},{"name":"inhibition of smoothened signaling pathway involved in dorsal/ventral neural tube patterning","type":"narrow"},{"name":"inhibition of smoothened signalling pathway involved in dorsal/ventral neural tube patterning","type":"narrow"},{"name":"negative regulation of hedgehog signaling pathway involved in dorsal/ventral neural tube patterning","type":"exact"},{"name":"negative regulation of hh signaling pathway involved in dorsal/ventral neural tube patterning","type":"exact"},{"name":"negative regulation of smoothened signalling pathway involved in dorsal/ventral neural tube patterning","type":"exact"}],"termid":"GO:1901621"}


id: PBO:0051328
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"immunoglobulin kappa variable 2-19 (pseudogene)","termid":"PBO:0051328"}


id: MOD:00289
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts three L-cysteine residues, an L-histidine residue and a four-iron four-sulfur cluster to tris-L-cysteinyl L-N1'-histidino tetrairon tetrasulfide.","definition_xrefs":["PubMed:9836629","RESID:AA0284"],"direct_ancestors":[{"relation_name":"is_a","term_name":"iron-sulfur cluster containing modification","termid":"MOD:00739"},{"relation_name":"is_a","term_name":"metal or metal cluster coordinated L-cysteine residue","termid":"MOD:02067"},{"relation_name":"is_a","term_name":"metal or metal cluster coordinated L-histidine residue","termid":"MOD:02070"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tris-L-cysteinyl L-N1'-histidino tetrairon tetrasulfide","synonyms":[{"name":"METAL Iron-sulfur (4Fe-4S)","type":"exact"},{"name":"METAL Iron-sulfur (4Fe-4S); via tele nitrogen","type":"exact"},{"name":"tetra-mu3-sulfidotris(S-cysteinyliron)(N1'-histidinoiron)","type":"exact"},{"name":"tris-L-cysteinyl L-N1'-histidino tetrairon tetrasulfide","type":"exact"}],"termid":"MOD:00289"}


id: GO:0070103
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the rate, frequency or extent of an interleukin-6-mediated signaling pathway.","definition_xrefs":["GOC:BHF","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of cytokine-mediated signaling pathway","termid":"GO:0001959"},{"relation_name":"regulates","term_name":"interleukin-6-mediated signaling pathway","termid":"GO:0070102"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"regulation of interleukin-6-mediated signaling pathway","synonyms":[{"name":"regulation of IL-6-mediated signaling pathway","type":"exact"},{"name":"regulation of interleukin-6-mediated signalling pathway","type":"exact"}],"termid":"GO:0070103"}


id: PBO:0003159
data:
  {"annotation_feature_type":"gene","cv_name":"EC numbers","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"3.5.4.6","termid":"PBO:0003159"}


id: GO:0005274
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: allantoin(out) + H+(out) = allantoin(in) + H+(in) by secondary active transport.","definition_xrefs":["GOC:mtg_transport","ISBN:0815340729","TC:2.A.39.3.1"],"direct_ancestors":[{"relation_name":"is_a","term_name":"solute:proton symporter activity","termid":"GO:0015295"},{"relation_name":"is_a","term_name":"amide transmembrane transporter activity","termid":"GO:0042887"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0022857","GO:0005215","GO:0003674"],"is_obsolete":false,"name":"allantoin:proton symporter activity","secondary_identifiers":["GO:0015206"],"synonyms":[{"name":"allantoin permease activity","type":"related"},{"name":"allantoin uptake transmembrane transporter activity","type":"narrow"},{"name":"allantoin/allantoate transporter","type":"broad"}],"termid":"GO:0005274"}


id: RO:0002414
data:
  {"annotation_feature_type":"gene","cv_name":"relationship","definition":"transitive form of directly_provides_input_for","direct_ancestors":[{"relation_name":"is_a","term_name":"causally_upstream_of","termid":"RO:0002411"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transitively_provides_input_for","termid":"RO:0002414"}


id: PBO:0041067
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"BRI3 binding protein pseudogene 1","termid":"PBO:0041067"}


id: PBO:0041209
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"basic leucine zipper and W2 domains 1 pseudogene 1","termid":"PBO:0041209"}


id: GO:0045642
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of basophil differentiation.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of granulocyte differentiation","termid":"GO:0030854"},{"relation_name":"is_a","term_name":"regulation of basophil differentiation","termid":"GO:0045640"},{"relation_name":"positively_regulates","term_name":"basophil differentiation","termid":"GO:0030221"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of basophil differentiation","synonyms":[{"name":"activation of basophil differentiation","type":"narrow"},{"name":"stimulation of basophil differentiation","type":"narrow"},{"name":"up regulation of basophil differentiation","type":"exact"},{"name":"up-regulation of basophil differentiation","type":"exact"},{"name":"upregulation of basophil differentiation","type":"exact"}],"termid":"GO:0045642"}


id: GO:1905929
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that activates or increases the frequency, rate or extent of invadopodium disassembly.","definition_xrefs":["PMID:15684033","GOC:TermGenie","GO_REF:0000058"],"gene_count":0,"genotype_count":0,"name":"obsolete positive regulation of invadopodium disassembly (obsolete GO:1905929)","synonyms":[{"name":"activation of invadopodium disassembly","type":"narrow"},{"name":"up regulation of invadopodium disassembly","type":"exact"},{"name":"up-regulation of invadopodium disassembly","type":"exact"},{"name":"upregulation of invadopodium disassembly","type":"exact"}],"termid":"GO:1905929"}


id: GO:0048024
data:
  {"annotated_genes":["SJAG_01511","SJAG_01040","SJAG_02018","SJAG_00996","SJAG_01799","SJAG_02058","SJAG_00504","SJAG_01919","SJAG_04782"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[89158],"is_not":false,"summary":null,"term":"GO:0048024"},{"annotations":[113366],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1905746"},{"annotations":[106042,73295,74463,87593,74390],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0048026"},{"annotations":[90759],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0000381"},{"annotations":[93899],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1905744"}]},"cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of mRNA splicing via a spliceosomal mechanism.","definition_xrefs":["GOC:jid"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of RNA splicing","termid":"GO:0043484"},{"relation_name":"is_a","term_name":"regulation of mRNA processing","termid":"GO:0050684"},{"relation_name":"regulates","term_name":"mRNA splicing, via spliceosome","termid":"GO:0000398"}],"gene_count":9,"genes_by_uniquename":{"SJAG_00504":null,"SJAG_00996":null,"SJAG_01040":null,"SJAG_01511":null,"SJAG_01799":null,"SJAG_01919":null,"SJAG_02018":null,"SJAG_02058":null,"SJAG_04782":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0016071"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0016071","GO:0010467","GO:0008150"],"is_obsolete":false,"name":"regulation of mRNA splicing, via spliceosome","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"secondary_identifiers":["GO:0035055"],"synonyms":[{"name":"regulation of nuclear mRNA splicing via U2-type spliceosome","type":"narrow"},{"name":"regulation of nuclear mRNA splicing, via spliceosome","type":"exact"},{"name":"regulation of pre-mRNA splicing","type":"broad"}],"termid":"GO:0048024","terms_by_termid":{"GO:0000381":null,"GO:0048024":null,"GO:0048026":null,"GO:1905744":null,"GO:1905746":null}}


id: PBO:0031522
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_DNA-7-methylguanine_glycosylase_activity","termid":"PBO:0031522"}


id: PBO:0058435
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 4999","termid":"PBO:0058435"}


id: PBO:0048096
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ferritin light chain pseudogene 17","termid":"PBO:0048096"}


id: GO:0002051
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The commitment of mesenchymal cells to the specific cell fate of an osteoblast. An osteoblast is a bone-forming cell which secretes an extracellular matrix. Hydroxyapatite crystals are then deposited into the matrix to form bone.","definition_xrefs":["GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell fate commitment","termid":"GO:0045165"},{"relation_name":"part_of","term_name":"osteoblast differentiation","termid":"GO:0001649"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"osteoblast fate commitment","termid":"GO:0002051"}


id: GO:0021573
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of rhombomere 7 over time, from its formation to the mature structure. Rhombomeres are transverse segments of the developing rhombencephalon. Rhombomeres are lineage restricted, express different genes from one another, and adopt different developmental fates. Rhombomeres are numbered in anterior to posterior order.","definition_xrefs":["GOC:cls","GO_REF:0000021","GOC:curators","GOC:dgh","GOC:jid","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"rhombomere development","termid":"GO:0021546"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"rhombomere 7 development","termid":"GO:0021573"}


id: SO:0001998
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A small RNA oligo, typically about 20 bases, that guides the cas nuclease to a target DNA sequence in the CRISPR/cas mutagenesis method.","definition_xrefs":["PMID:23934893"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oligo","termid":"SO:0000696"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sgRNA","synonyms":[{"name":"gRNA","type":"related"},{"name":"guide RNA","type":"related"},{"name":"small guide RNA","type":"exact"}],"termid":"SO:0001998"}


id: SO:0001074
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"Polypeptide region that is localized outside of a lipid bilayer and outside of the cytoplasm.","definition_xrefs":["EBIBS:GAR","SO:cb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"extramembrane_polypeptide_region","termid":"SO:0001072"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"SO:0000839"}],"interesting_parent_ids":["SO:0000839"],"is_obsolete":false,"name":"non_cytoplasmic_polypeptide_region","secondary_identifiers":["BS:00144"],"synonyms":[{"name":"non cytoplasmic polypeptide region","type":"exact"},{"name":"non_cytoplasm_location","type":"exact"},{"name":"outside","type":"related"}],"termid":"SO:0001074"}


id: PBO:0026785
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_ascus_morphology","termid":"PBO:0026785"}


id: GO:0141089
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to and responding, e.g. by conformational change, to changes in the cellular level of glucose.","definition_xrefs":["PMID:17470517"],"direct_ancestors":[{"relation_name":"is_a","term_name":"small molecule sensor activity","termid":"GO:0140299"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0140299"}],"interesting_parent_ids":["GO:0003674","GO:0140299"],"is_obsolete":false,"name":"glucose sensor activity","synonyms":[{"name":"glucose sensing activity","type":"exact"}],"termid":"GO:0141089"}


id: _global:gained
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"X gained Y if X is a variant_of X' and Y part of X but not X'.","definition_xrefs":["SO:ke"],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"gained","termid":"_global:gained"}


id: SO:0000883
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A stop codon redefined to be a new amino acid.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"recoded_codon","termid":"SO:0000145"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"stop_codon_read_through","synonyms":[{"name":"stop codon read through","type":"exact"},{"name":"stop codon readthrough","type":"related"}],"termid":"SO:0000883"}


id: PBO:0051739
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"integrator complex subunit 6 pseudogene 1","termid":"PBO:0051739"}


id: PBO:0027370
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-altered_cellular_amino_acid_level_during_vegetative_growth","termid":"PBO:0027370"}


id: GO:0001301
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any chromatin organization process that occurs during the lifespan of the cell that results in changes in chromatin structure. Such changes may lead to gene dysregulation and ultimately to a loss in cell homeostasis, bringing about an aging phenotype.","definition_xrefs":["GOC:jh","GOC:vw","PMID:12044938"],"gene_count":0,"genotype_count":0,"name":"obsolete progressive alteration of chromatin involved in cell aging (obsolete GO:0001301)","synonyms":[{"name":"age-dependent accumulation of genetic damage","type":"related"},{"name":"progressive alteration of chromatin during cell ageing","type":"exact"},{"name":"progressive alteration of chromatin during cell aging","type":"related"}],"termid":"GO:0001301"}


id: PR:000027986
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A tropomyosin cdc8 that is encoded in the genome of Schizosaccharomyces pombe.","definition_xrefs":["PRO:DAN"],"direct_ancestors":[{"relation_name":"is_a","term_name":"tropomyosin cdc8","termid":"PR:000028197"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tropomyosin cdc8 (Schizosaccharomyces pombe)","pombase_gene_id":"SPAC27F1.02c","synonyms":[{"name":"Spom-cdc8","type":"exact"}],"termid":"PR:000027986"}


id: PBO:0086572
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Putative protein of unknown function; conserved among S. cerevisiae strains; YPR064W is not an essential gene","termid":"PBO:0086572"}


id: FYPO:0006621
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which deacetylation of lysine at position 4 of histone H3 is normal (i.e. indistinguishable from wild type) when the cell is returned to glucose-rich medium following glucose starvation.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal protein modification","termid":"FYPO:0002495"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000257"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0000257"],"is_obsolete":false,"name":"normal H3-K4 deacetylation during recovery from glucose starvation","synonyms":[{"name":"normal H3-K4 deacetylation during recovery from glucose depletion","type":"exact"},{"name":"normal H3-K4 deacetylation during recovery from glucose deprivation","type":"exact"},{"name":"normal H3-K4 deacetylation during recovery from glucose limitation","type":"related"},{"name":"normal H3-K4 deacetylation following glucose starvation","type":"exact"},{"name":"normal H3K4 deacetylation during recovery from glucose starvation","type":"exact"}],"termid":"FYPO:0006621"}


id: SO:0000400
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"An attribute describes a quality of sequence.","definition_xrefs":["SO:ke"],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sequence_attribute","synonyms":[{"name":"sequence attribute","type":"exact"}],"termid":"SO:0000400"}


id: GO:0050930
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that initiates the directed movement of a motile cell or organism towards a higher concentration in a concentration gradient of a specific chemical.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of positive chemotaxis","termid":"GO:0050927"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"induction of positive chemotaxis","termid":"GO:0050930"}


id: GO:0001775
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A multicellular organismal process by which exposure to an activating factor such as a cellular or soluble ligand results in a change in the morphology or behavior of a cell.","definition_xrefs":["GOC:mgi_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular process","termid":"GO:0009987"},{"relation_name":"is_a","term_name":"multicellular organismal process","termid":"GO:0032501"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cell activation","termid":"GO:0001775"}


id: GO:0045773
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of axon extension.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of cell growth","termid":"GO:0030307"},{"relation_name":"is_a","term_name":"regulation of axon extension","termid":"GO:0030516"},{"relation_name":"is_a","term_name":"positive regulation of developmental growth","termid":"GO:0048639"},{"relation_name":"is_a","term_name":"positive regulation of axonogenesis","termid":"GO:0050772"},{"relation_name":"positively_regulates","term_name":"axon extension","termid":"GO:0048675"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of axon extension","synonyms":[{"name":"activation of axon extension","type":"narrow"},{"name":"stimulation of axon extension","type":"narrow"},{"name":"up regulation of axon extension","type":"exact"},{"name":"up-regulation of axon extension","type":"exact"},{"name":"upregulation of axon extension","type":"exact"}],"termid":"GO:0045773"}


id: PBO:0084463
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MAP kinase kinase kinase of HOG1 mitogen-activated signaling pathway; interacts with Ssk1p, leading to autophosphorylation and activation of Ssk2p which phosphorylates Pbs2p; also mediates actin cytoskeleton recovery from osmotic stress; a HOG-independent function of Ssk2p mediates the calcium-sensitive phenotype of the ptp2 msg5 double disruptant; SSK2 has a paralog, SSK22, that arose from the whole genome duplication","termid":"PBO:0084463"}


id: PBO:0044248
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CUB and zona pellucida like domains 1","termid":"PBO:0044248"}


id: GO:0009377
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the ATP-dependent hydrolysis of peptide bonds in substrates including E. coli SulA and misfolded proteins.","definition_xrefs":["GOC:mah","PMID:10368141"],"gene_count":0,"genotype_count":0,"name":"obsolete HslUV protease activity (obsolete GO:0009377)","synonyms":[{"name":"HslUV protease activity","type":"exact"}],"termid":"GO:0009377"}


id: PBO:0041587
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"carbonic anhydrase 2","termid":"PBO:0041587"}


id: PBO:0044128
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CTAGE family member 14, pseudogene","termid":"PBO:0044128"}


id: PBO:0085854
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein of unknown function; green fluorescent protein (GFP)- fusion protein localizes to the mother side of the bud neck and the vacuole; YOL007C is not an essential gene","termid":"PBO:0085854"}


id: GO:2001162
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that activates or increases the frequency, rate or extent of histone H3-K79 methylation.","definition_xrefs":["PMID:12876294"],"gene_count":0,"genotype_count":0,"name":"obsolete positive regulation of histone H3-K79 methylation (obsolete GO:2001162)","synonyms":[{"name":"positive regulation of histone H3 K79 methylation","type":"exact"},{"name":"positive regulation of histone H3K79me","type":"exact"},{"name":"positive regulation of histone lysine H3 K79 methylation","type":"exact"}],"termid":"GO:2001162"}


id: PR:P46960
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A geranylgeranyl transferase type-2 subunit beta that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO00626","PRO:DNx","PANTHER:PTHR11774:SF5"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"geranylgeranyl transferase type-2 subunit beta (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC167.02","secondary_identifiers":["UniProtKB:P46960"],"synonyms":[{"name":"GGTase-II-beta (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-RABGGTB","type":"exact"},{"name":"geranylgeranyl transferase type II subunit beta (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"type II protein geranyl-geranyltransferase subunit beta (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:P46960"}


id: GO:0018245
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The glycosylation of protein via the O4' atom of peptidyl-tyrosine, O4'-glycosyl-L-tyrosine; the carbohydrate is glucose, the origin for glycogen.","definition_xrefs":["RESID:AA0157"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein O-linked glycosylation","termid":"GO:0006493"},{"relation_name":"is_a","term_name":"peptidyl-tyrosine modification","termid":"GO:0018212"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006486"}],"interesting_parent_ids":["GO:0008150","GO:0006486"],"is_obsolete":false,"name":"protein O-linked glycosylation via tyrosine","synonyms":[{"name":"protein amino acid O-linked glycosylation via tyrosine","type":"exact"}],"termid":"GO:0018245"}


id: GO:0055126
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"OBSOLETE. A protein complex that forms part of the nuclear pore complex. It forms a subcomplex with Nup159p and Nsp1p, interacts with Nup116p, and is required for proper localization of Nup116p. In Saccharomyces cerevisiae this complex contains Nup82p, Nsp1p, Nup159p, Nup116p, and Gle2p.","definition_xrefs":["PMID:15741174","GOC:jh","PMID:12791264"],"gene_count":0,"genotype_count":0,"name":"obsolete Nup82 complex (obsolete GO:0055126)","synonyms":[{"name":"Nup82 complex","type":"exact"}],"termid":"GO:0055126"}


id: PBO:0085857
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the nucleus; protein abundance increases in response to DNA replication stress","termid":"PBO:0085857"}


id: PBO:0089075
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SAGA complex/transcription factor TFIID complex subunit Taf9","termid":"PBO:0089075"}


id: PBO:0055551
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2987","termid":"PBO:0055551"}


id: GO:0031390
data:
  {"annotated_genes":["SJAG_02182","SJAG_02373","SJAG_01010","SJAG_00272","SJAG_00806","SJAG_02610","SJAG_00729"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[72218,75988,76407,87161,89366,91670,107822],"is_not":false,"summary":null,"term":"GO:0031390"}]},"cv_name":"cellular_component","definition":"A heptameric complex related to replication factor C, which loads the DNA polymerase processivity factor proliferating cell nuclear antigen (PCNA) onto DNA and plays a vital role in chromosome cohesion. In Saccharomyces the subunits are known as Ctf18p, Rfc2p, Rfc3p, Rfc4p, Rfc5p, Dcc1p, and Ctf8p.","definition_xrefs":["PMID:14614842"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nuclear protein-containing complex","termid":"GO:0140513"},{"relation_name":"part_of","term_name":"chromosome","termid":"GO:0005694"}],"gene_count":7,"genes_by_uniquename":{"SJAG_00272":null,"SJAG_00729":null,"SJAG_00806":null,"SJAG_01010":null,"SJAG_02182":null,"SJAG_02373":null,"SJAG_02610":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005634"},{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005694"}],"interesting_parent_ids":["GO:0005694","GO:0032991","GO:0005634","GO:0005575"],"is_obsolete":false,"name":"Ctf18 RFC-like complex","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"synonyms":[{"name":"Ctf18-RFC","type":"exact"},{"name":"Ctf18-RLC","type":"exact"},{"name":"RFC (Ctf18)","type":"exact"}],"termid":"GO:0031390","terms_by_termid":{"GO:0031390":null}}


id: PR:O94647
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- ppk24 gene.","definition_xrefs":["UniProtKB:O94647","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"serine/threonine-protein kinase ppk24, mitochondrial (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC21.07c","synonyms":[{"name":"Spom972h-ppk24","type":"exact"},{"name":"meiotically up-regulated gene 29 protein (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:O94647"}


id: GO:0042544
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of melibiose, the disaccharide 6-O-alpha-D-galactopyranosyl-D-glucose.","definition_xrefs":["ISBN:0198506732","GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"melibiose metabolic process","termid":"GO:0005994"},{"relation_name":"is_a","term_name":"disaccharide biosynthetic process","termid":"GO:0046351"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005975"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0005975","GO:0008150"],"is_obsolete":false,"name":"melibiose biosynthetic process","synonyms":[{"name":"melibiose anabolism","type":"exact"},{"name":"melibiose biosynthesis","type":"exact"},{"name":"melibiose formation","type":"exact"},{"name":"melibiose synthesis","type":"exact"}],"termid":"GO:0042544"}


id: FYPO:0002431
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"OBSOLETE. A mixed population phenotype in which all cells in a population are inviable, and the population includes a mixture of germinated spores of abnormal shape and vegetative cells of abnormal shape. The vegetative cells arise from division of some of the germinated spores, and may form a microcolony of up to 64 cells.","definition_xrefs":["PomBase:mah","PomBase:vw"],"gene_count":0,"genotype_count":0,"name":"obsolete inviable mixed population including germinated spores with abnormal shape and cells with abnormal shape (obsolete FYPO:0002431)","termid":"FYPO:0002431"}


id: PBO:0108906
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"GPCPD1 pseudogene 1","termid":"PBO:0108906"}


id: GO:1901600
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving strigolactone.","definition_xrefs":["GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"sesquiterpenoid metabolic process","termid":"GO:0006714"},{"relation_name":"is_a","term_name":"lactone metabolic process","termid":"GO:1901334"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006629"}],"interesting_parent_ids":["GO:0008150","GO:0006629"],"is_obsolete":false,"name":"strigolactone metabolic process","synonyms":[{"name":"strigolactone metabolism","type":"exact"}],"termid":"GO:1901600"}


id: GO:1903283
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of glutathione peroxidase activity.","definition_xrefs":["GOC:PARL","GOC:bf","GO_REF:0000059","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of glutathione peroxidase activity","termid":"GO:1903282"},{"relation_name":"is_a","term_name":"negative regulation of peroxidase activity","termid":"GO:2000469"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of glutathione peroxidase activity","synonyms":[{"name":"down regulation of GSH peroxidase activity","type":"exact"},{"name":"down regulation of glutathione peroxidase activity","type":"exact"},{"name":"down regulation of glutathione:hydrogen-peroxide oxidoreductase activity","type":"exact"},{"name":"down regulation of non-selenium glutathione peroxidase activity","type":"narrow"},{"name":"down regulation of reduced glutathione peroxidase activity","type":"exact"},{"name":"down regulation of selenium-glutathione peroxidase activity","type":"exact"},{"name":"down-regulation of GSH peroxidase activity","type":"exact"},{"name":"down-regulation of glutathione peroxidase activity","type":"exact"},{"name":"down-regulation of glutathione:hydrogen-peroxide oxidoreductase activity","type":"exact"},{"name":"down-regulation of non-selenium glutathione peroxidase activity","type":"narrow"},{"name":"down-regulation of reduced glutathione peroxidase activity","type":"exact"},{"name":"down-regulation of selenium-glutathione peroxidase activity","type":"exact"},{"name":"downregulation of GSH peroxidase activity","type":"exact"},{"name":"downregulation of glutathione peroxidase activity","type":"exact"},{"name":"downregulation of glutathione:hydrogen-peroxide oxidoreductase activity","type":"exact"},{"name":"downregulation of non-selenium glutathione peroxidase activity","type":"narrow"},{"name":"downregulation of reduced glutathione peroxidase activity","type":"exact"},{"name":"downregulation of selenium-glutathione peroxidase activity","type":"exact"},{"name":"inhibition of GSH peroxidase activity","type":"narrow"},{"name":"inhibition of glutathione peroxidase activity","type":"narrow"},{"name":"inhibition of glutathione:hydrogen-peroxide oxidoreductase activity","type":"narrow"},{"name":"inhibition of non-selenium glutathione peroxidase activity","type":"narrow"},{"name":"inhibition of reduced glutathione peroxidase activity","type":"narrow"},{"name":"inhibition of selenium-glutathione peroxidase activity","type":"narrow"},{"name":"negative regulation of GSH peroxidase activity","type":"exact"},{"name":"negative regulation of glutathione:hydrogen-peroxide oxidoreductase activity","type":"exact"},{"name":"negative regulation of non-selenium glutathione peroxidase activity","type":"narrow"},{"name":"negative regulation of reduced glutathione peroxidase activity","type":"exact"},{"name":"negative regulation of selenium-glutathione peroxidase activity","type":"exact"}],"termid":"GO:1903283"}


id: PBO:0055560
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2996","termid":"PBO:0055560"}


id: PBO:0081458
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein 324B","termid":"PBO:0081458"}


id: GO:0110036
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to the C2 domain of a protein, a protein structural domain involved in targeting proteins to cell membranes.","definition_xrefs":["GOC:sl","PMID:24882364"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein domain specific binding","termid":"GO:0019904"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005515"},{"rel_name":"is_a","termid":"GO:0005488"}],"interesting_parent_ids":["GO:0005488","GO:0003674","GO:0005515"],"is_obsolete":false,"name":"C2 domain binding","termid":"GO:0110036"}


id: GO:0015305
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: (lactose or galactose)(out) + H+(out) = (lactose or galactose)(in) + H+(in).","definition_xrefs":["TC:2.A.1.1.9"],"gene_count":0,"genotype_count":0,"name":"obsolete lactose, galactose:proton symporter activity (obsolete GO:0015305)","synonyms":[{"name":"lactose, galactose:hydrogen symporter activity","type":"exact"},{"name":"lactose, galactose:proton symporter activity","type":"exact"},{"name":"lactose,galactose:proton symporter activity","type":"exact"}],"termid":"GO:0015305"}


id: PBO:0048819
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"G protein subunit gamma 5 pseudogene 3","termid":"PBO:0048819"}


id: PBO:0061764
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ornithine aminotransferase pseudogene 1","termid":"PBO:0061764"}


id: PBO:0041775
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"calpain 14","termid":"PBO:0041775"}


id: PBO:0038778
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"activin A receptor type 1C","termid":"PBO:0038778"}


id: PBO:0062796
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ORMDL1 pseudogene 1","termid":"PBO:0062796"}


id: PATO:0001926
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A fluorescence which is higher than normal.","definition_xrefs":["PATOC:GVG"],"direct_ancestors":[{"relation_name":"increased_in_magnitude_relative_to","term_name":"normal","termid":"PATO:0000461"},{"relation_name":"is_a","term_name":"fluorescent","termid":"PATO:0001290"},{"relation_name":"is_a","term_name":"increased object quality","termid":"PATO:0002305"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"increased fluorescence","synonyms":[{"name":"high fluorescence","type":"exact"}],"termid":"PATO:0001926"}


id: GO:0052579
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: (+)-isomenthone + NADP+ = (+)-pulegone + NADPH + H+.","definition_xrefs":["EC:1.3.1.81","MetaCyc:RXN-5164"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor","termid":"GO:0016628"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016491","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"(+)-pulegone reductase, (+)-isomenthone as substrate, activity","synonyms":[{"name":"(+)-isomenthone:NADP+ oxidoreductase activity","type":"related"}],"termid":"GO:0052579"}


id: PBO:0081791
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein 721","termid":"PBO:0081791"}


id: PBO:0110320
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"alpha 1,4-galactosyltransferase (P1PK blood group)","termid":"PBO:0110320"}


id: PR:O94650
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A ubiquitin-like protein 5 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx","PANTHER:PTHR13042:SF0","OMA:SCHPO02376"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ubiquitin-like modifier hub1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC31E1.03","secondary_identifiers":["UniProtKB:O94650"],"synonyms":[{"name":"Spom972h-UBL5","type":"exact"}],"termid":"PR:O94650"}


id: PBO:0069219
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 474, pseudogene","termid":"PBO:0069219"}


id: GO:0052843
data:
  {"annotated_genes":["SJAG_01154","SJAG_00244"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[100410,110111],"is_not":false,"summary":null,"term":"GO:0052843"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: 1-diphospho-1D-myo-inositol 2,3,4,5,6-pentakisphosphate + H2O = 1D-myo-inositol 1,2,3,4,5,6-hexakisphosphate + phosphate + 2 H+.","definition_xrefs":["PMID:10827188","PMID:11502751","PMID:26422458"],"direct_ancestors":[{"relation_name":"is_a","term_name":"inositol diphosphate pentakisphosphate diphosphatase activity","termid":"GO:0052842"}],"gene_count":2,"genes_by_uniquename":{"SJAG_00244":null,"SJAG_01154":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016787"}],"interesting_parent_ids":["GO:0003674","GO:0016787","GO:0003824"],"is_obsolete":false,"name":"inositol-1-diphosphate-2,3,4,5,6-pentakisphosphate diphosphatase activity","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["GO:0101011","MetaCyc:RXN-10977"],"synonyms":[{"name":"inositol 1-diphosphate 2,3,4,5,6-pentakisphosphate 1-diphosphatase activity","type":"exact"},{"name":"inositol 1-pyrophosphate 2,3,4,5,6-pentakisphosphate 1-pyrophosphatase activity","type":"exact"}],"termid":"GO:0052843","terms_by_termid":{"GO:0052843":null}}


id: PBO:0079086
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-Tyr (anticodon GTA) 3-1","termid":"PBO:0079086"}


id: PBO:0056594
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"malate dehydrogenase 1","termid":"PBO:0056594"}


id: PBO:0082863
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Core Sm protein Sm D2; part of heteroheptameric complex (with Smb1p, Smd1p, Smd3p, Sme1p, Smx3p, and Smx2p) that is part of the spliceosomal U1, U2, U4, and U5 snRNPs; homolog of human Sm D2","termid":"PBO:0082863"}


id: GO:0097719
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The regrowth of neural tissue following its loss or destruction.","definition_xrefs":["Wikipedia:Neuroregeneration"],"direct_ancestors":[{"relation_name":"is_a","term_name":"tissue regeneration","termid":"GO:0042246"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"neural tissue regeneration","synonyms":[{"name":"neuroregeneration","type":"related"}],"termid":"GO:0097719"}


id: PBO:0075080
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nucleolar RNA, C/D box 130","termid":"PBO:0075080"}


id: GO:0002182
data:
  {"annotated_genes":["SJAG_02585","SJAG_01074","SJAG_02738","SJAG_01536","SJAG_01128","SJAG_04204","SJAG_03094","SJAG_01851","SJAG_00468","SJAG_04168","SJAG_04452","SJAG_04157","SJAG_03677","SJAG_04756","SJAG_02189","SJAG_02493","SJAG_02812","SJAG_04020","SJAG_02180","SJAG_00541","SJAG_04174","SJAG_05332","SJAG_04029","SJAG_02020","SJAG_04847","SJAG_02017","SJAG_01438","SJAG_00579","SJAG_01411","SJAG_03863","SJAG_02871"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[90722,92069,93667,93668,100307,100612,100613,100769,103080,104319,104320,108593,108594,108952,109778,110736,111323,111324,111956,113422,113423,113424,113837,113838,113885,113886],"is_not":false,"summary":null,"term":"GO:0002182"},{"annotations":[109475],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0140708"},{"annotations":[109054,90846,104642,105292],"is_not":false,"rel_names":["regulates"],"summary":null,"term":"GO:0140018"}]},"cv_name":"biological_process","definition":"The successive addition of amino acid residues to a nascent polypeptide chain during protein biosynthesis in the cytoplasm.","definition_xrefs":["GOC:hjd"],"direct_ancestors":[{"relation_name":"is_a","term_name":"translational elongation","termid":"GO:0006414"},{"relation_name":"part_of","term_name":"cytoplasmic translation","termid":"GO:0002181"}],"gene_count":31,"genes_by_uniquename":{"SJAG_00468":null,"SJAG_00541":null,"SJAG_00579":null,"SJAG_01074":null,"SJAG_01128":null,"SJAG_01411":null,"SJAG_01438":null,"SJAG_01536":null,"SJAG_01851":null,"SJAG_02017":null,"SJAG_02020":null,"SJAG_02180":null,"SJAG_02189":null,"SJAG_02493":null,"SJAG_02585":null,"SJAG_02738":null,"SJAG_02812":null,"SJAG_02871":null,"SJAG_03094":null,"SJAG_03677":null,"SJAG_03863":null,"SJAG_04020":null,"SJAG_04029":null,"SJAG_04157":null,"SJAG_04168":null,"SJAG_04174":null,"SJAG_04204":null,"SJAG_04452":null,"SJAG_04756":null,"SJAG_04847":null,"SJAG_05332":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0002181"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0008150","GO:0010467","GO:0002181"],"is_obsolete":false,"name":"cytoplasmic translational elongation","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0002182","terms_by_termid":{"GO:0002182":null,"GO:0140018":null,"GO:0140708":null}}


id: PBO:0042426
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cell division cycle 27 pseudogene 10","termid":"PBO:0042426"}


id: PBO:0064229
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"phospholipase C gamma 2","termid":"PBO:0064229"}


id: FYPO:0000962
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A phenotype in which vegetative cell population growth is normal (i.e. indistinguishable from wild type) in a medium containing hydrogen peroxide.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal vegetative cell population growth","termid":"FYPO:0001357"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000003"},{"rel_name":"is_a","termid":"FYPO:0002058"},{"rel_name":"is_a","termid":"FYPO:0002060"},{"rel_name":"is_a","termid":"FYPO:0002057"},{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0000139"}],"interesting_parent_ids":["FYPO:0002057","FYPO:0000257","FYPO:0002060","FYPO:0000003","FYPO:0002058","FYPO:0000139"],"is_obsolete":false,"name":"normal growth on hydrogen peroxide","synonyms":[{"name":"normal cell population growth in presence of hydrogen peroxide","type":"exact"},{"name":"normal cell population growth on H2O2","type":"exact"},{"name":"normal cell population growth on hydrogen peroxide","type":"exact"},{"name":"normal cellular response to hydrogen peroxide","type":"related"},{"name":"normal vegetative cell population growth on hydrogen peroxide","type":"exact"}],"termid":"FYPO:0000962"}


id: PBO:0090890
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"rRNA exonuclease Rrp17","termid":"PBO:0090890"}


id: PATO:0000444
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0000444 percentage value (obsolete PATO:0000444)","termid":"PATO:0000444"}


id: GO:0016710
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: trans-cinnamate + NADPH + H+ + O2 = 4-hydroxycinnamate + NADP+ + H2O.","definition_xrefs":["EC:1.14.14.91"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen","termid":"GO:0016709"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0016491","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"trans-cinnamate 4-monooxygenase activity","secondary_identifiers":["MetaCyc:TRANS-CINNAMATE-4-MONOOXYGENASE-RXN","RHEA:10608"],"synonyms":[{"name":"CA4H activity","type":"narrow"},{"name":"cinnamate 4-hydroxylase activity","type":"related"},{"name":"cinnamate 4-monooxygenase activity","type":"related"},{"name":"cinnamate hydroxylase activity","type":"related"},{"name":"cinnamic 4-hydroxylase activity","type":"related"},{"name":"cinnamic acid 4-hydroxylase activity","type":"related"},{"name":"cinnamic acid 4-monooxygenase activity","type":"related"},{"name":"cinnamic acid p-hydroxylase activity","type":"related"},{"name":"cytochrome P450 cinnamate 4-hydroxylase activity","type":"related"},{"name":"hydroxylase, cinnamate 4-","type":"related"},{"name":"oxygenase, cinnamate 4-mono-","type":"related"},{"name":"t-cinnamic acid hydroxylase activity","type":"related"},{"name":"trans-cinnamate 4-hydroxylase activity","type":"related"},{"name":"trans-cinnamate,NADPH:oxygen oxidoreductase (4-hydroxylating)","type":"related"},{"name":"trans-cinnamic acid 4-hydroxylase activity","type":"related"}],"termid":"GO:0016710"}


id: PBO:0070393
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RAR related orphan receptor A","termid":"PBO:0070393"}


id: PBO:0084846
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Mitochondrial ribosomal protein of the large subunit; homolog of prokaryotic L29 ribosomal protein; located at the ribosomal tunnel exit","termid":"PBO:0084846"}


id: GO:0003277
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any apoptotic process that contributes to the shaping of an endocardial cushion. The endocardial cushion is a specialized region of mesenchymal cells that will give rise to the heart septa and valves.","definition_xrefs":["GOC:mtg_heart","GOC:mtg_apoptosis"],"direct_ancestors":[{"relation_name":"is_a","term_name":"apoptotic process involved in heart morphogenesis","termid":"GO:0003278"},{"relation_name":"part_of","term_name":"endocardial cushion morphogenesis","termid":"GO:0003203"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"apoptotic process involved in endocardial cushion morphogenesis","synonyms":[{"name":"apoptosis involved in endocardial cushion morphogenesis","type":"narrow"}],"termid":"GO:0003277"}


id: MOD:00665
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-alanine residue to a methylated alanine, such as N-methylalanine, N,N-dimethylalanine, or N,N,N-trimethylalanine.","definition_xrefs":["PubMed:18688235"],"direct_ancestors":[{"relation_name":"is_a","term_name":"methylated residue","termid":"MOD:00427"},{"relation_name":"is_a","term_name":"modified L-alanine residue","termid":"MOD:00901"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:00427"}],"interesting_parent_ids":["MOD:00427"],"is_obsolete":false,"name":"methylated alanine","synonyms":[{"name":"MeAla","type":"exact"}],"termid":"MOD:00665"}


id: PBO:0040019
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"armadillo repeat containing 8","termid":"PBO:0040019"}


id: PBO:0039674
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"adaptor related protein complex 4 subunit sigma 1","termid":"PBO:0039674"}


id: GO:0022869
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the PEP-dependent, phosphoryl transfer-driven transport of substances across a membrane. The transport happens by catalysis of the reaction: protein N-phosphohistidine + lactose(out) = protein histidine + lactose phosphate(in). This differs from primary and secondary active transport in that the solute is modified during transport.","definition_xrefs":["GOC:mtg_transport","ISBN:0815340729"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein-N(PI)-phosphohistidine-sugar phosphotransferase activity","termid":"GO:0008982"},{"relation_name":"is_a","term_name":"lactose transmembrane transporter activity","termid":"GO:0015155"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016740","GO:0003824","GO:0005215","GO:0003674","GO:0022857"],"is_obsolete":false,"name":"protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity","synonyms":[{"name":"lactose PTS transporter activity","type":"exact"}],"termid":"GO:0022869"}


id: PBO:0002006
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"clathrin heavy chain Chc1 (predicted)","termid":"PBO:0002006"}


id: GO:0032903
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate, or extent of production of nerve growth factor (NGF).","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of neurotrophin production","termid":"GO:0032899"},{"relation_name":"regulates","term_name":"nerve growth factor production","termid":"GO:0032902"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of nerve growth factor production","synonyms":[{"name":"regulation of NGF production","type":"exact"},{"name":"regulation of beta-nerve growth factor production","type":"exact"}],"termid":"GO:0032903"}


id: PBO:0062182
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 4 subfamily N member 3B pseudogene","termid":"PBO:0062182"}


id: PBO:0031023
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_concentration_of_M-factor_in_growth_medium","termid":"PBO:0031023"}


id: SO:0001786
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A functional variant whereby the sequence alteration causes a loss of function of one allele of a gene.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"functionally_abnormal","termid":"SO:0002218"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"loss_of_heterozygosity","synonyms":[{"name":"LOH","type":"exact"},{"name":"loss of heterozygosity","type":"exact"}],"termid":"SO:0001786"}


id: GO:0071644
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate, or extent of production of chemokine (C-C motif) ligand 4.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of chemokine production","termid":"GO:0032682"},{"relation_name":"is_a","term_name":"regulation of chemokine (C-C motif) ligand 4 production","termid":"GO:0071643"},{"relation_name":"negatively_regulates","term_name":"chemokine (C-C motif) ligand 4 production","termid":"GO:0071606"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0010467"},{"rel_name":"negatively_regulates","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0010467","GO:0008150"],"is_obsolete":false,"name":"negative regulation of chemokine (C-C motif) ligand 4 production","synonyms":[{"name":"negative regulation of CCL4 production","type":"exact"},{"name":"negative regulation of MIP-1b production","type":"exact"},{"name":"negative regulation of macrophage inflammatory protein production","type":"broad"}],"termid":"GO:0071644"}


id: GO:0019787
data:
  {"annotated_genes":["SJAG_00727","SJAG_02371","SJAG_05323","SJAG_04151","SJAG_03324","SJAG_01535","SJAG_01253","SJAG_05022","SJAG_04619","SJAG_04966","SJAG_04600","SJAG_03860","SJAG_00475","SJAG_04857","SJAG_05012","SJAG_02082","SJAG_03175","SJAG_02299","SJAG_02851","SJAG_02347","SJAG_05340","SJAG_00293","SJAG_01165","SJAG_00500","SJAG_04783","SJAG_00931","SJAG_04429","SJAG_00435","SJAG_00604","SJAG_03968","SJAG_03883","SJAG_03657","SJAG_02918","SJAG_05264","SJAG_04915","SJAG_01360","SJAG_03250","SJAG_01992","SJAG_02415","SJAG_02685","SJAG_01854","SJAG_02575","SJAG_02308","SJAG_03006","SJAG_04573","SJAG_05236","SJAG_04612","SJAG_01561","SJAG_05274","SJAG_03618","SJAG_03970","SJAG_00208","SJAG_01251","SJAG_03136","SJAG_03831","SJAG_01772","SJAG_02603","SJAG_03191","SJAG_00111","SJAG_00300","SJAG_02169","SJAG_00819","SJAG_03005","SJAG_04990","SJAG_00509","SJAG_01533","SJAG_01507","SJAG_00855","SJAG_03615","SJAG_02746","SJAG_03613","SJAG_02652","SJAG_02521","SJAG_01776","SJAG_02319","SJAG_00173","SJAG_00059","SJAG_01900","SJAG_01018","SJAG_04309","SJAG_01637","SJAG_06309","SJAG_00561","SJAG_00341","SJAG_00188","SJAG_00552","SJAG_01593","SJAG_01679","SJAG_03112","SJAG_01212","SJAG_00209","SJAG_02668"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[88332],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0061651"},{"annotations":[71727,72485,104920,105408],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0019776"},{"annotations":[113778,111244],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0140850"},{"annotations":[89752],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0140851"},{"annotations":[113347],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0061654"},{"annotations":[74770,99726],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0061656"},{"annotations":[72038,71997,99610],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0061665"},{"annotations":[86990,105108],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0140082"},{"annotations":[103357,83580,76808,97380,71156,83733,97526,101653,108076,83372,109341,111797],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0061631"},{"annotations":[84186,71752,75496,97139,74506,86217,105365,108480,103055,110439,83581,112229,98282,111717,104043,85710,100176,107194,113385,83874,105109,109342,88987,107909,92067,71644,85059,102149,85297,77184,98658,73621,100453,111718,112189,94709,92147,71037,103186,96593,109396,76854,78361,85227,76219,90776,73465,74480,84863,75215,73468,72603,95545,77705,76189,83591,74599,71570,93870,104793,77344,72372,99611],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0061630"},{"annotations":[100098,102382,86958,108719],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0061659"},{"annotations":[73896],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0034450"}]},"cv_name":"molecular_function","definition":"Catalysis of the transfer of a ubiquitin-like from one protein to another via the reaction X-ULP + Y = Y-ULP + X, where both X-ULP and Y-ULP are covalent linkages. ULP represents a ubiquitin-like protein.","definition_xrefs":["GOC:rn","PMID:10806345","GOC:mah","PMID:10884686"],"direct_ancestors":[{"relation_name":"is_a","term_name":"aminoacyltransferase activity","termid":"GO:0016755"},{"relation_name":"is_a","term_name":"catalytic activity, acting on a protein","termid":"GO:0140096"}],"gene_count":92,"genes_by_uniquename":{"SJAG_00059":null,"SJAG_00111":null,"SJAG_00173":null,"SJAG_00188":null,"SJAG_00208":null,"SJAG_00209":null,"SJAG_00293":null,"SJAG_00300":null,"SJAG_00341":null,"SJAG_00435":null,"SJAG_00475":null,"SJAG_00500":null,"SJAG_00509":null,"SJAG_00552":null,"SJAG_00561":null,"SJAG_00604":null,"SJAG_00727":null,"SJAG_00819":null,"SJAG_00855":null,"SJAG_00931":null,"SJAG_01018":null,"SJAG_01165":null,"SJAG_01212":null,"SJAG_01251":null,"SJAG_01253":null,"SJAG_01360":null,"SJAG_01507":null,"SJAG_01533":null,"SJAG_01535":null,"SJAG_01561":null,"SJAG_01593":null,"SJAG_01637":null,"SJAG_01679":null,"SJAG_01772":null,"SJAG_01776":null,"SJAG_01854":null,"SJAG_01900":null,"SJAG_01992":null,"SJAG_02082":null,"SJAG_02169":null,"SJAG_02299":null,"SJAG_02308":null,"SJAG_02319":null,"SJAG_02347":null,"SJAG_02371":null,"SJAG_02415":null,"SJAG_02521":null,"SJAG_02575":null,"SJAG_02603":null,"SJAG_02652":null,"SJAG_02668":null,"SJAG_02685":null,"SJAG_02746":null,"SJAG_02851":null,"SJAG_02918":null,"SJAG_03005":null,"SJAG_03006":null,"SJAG_03112":null,"SJAG_03136":null,"SJAG_03175":null,"SJAG_03191":null,"SJAG_03250":null,"SJAG_03324":null,"SJAG_03613":null,"SJAG_03615":null,"SJAG_03618":null,"SJAG_03657":null,"SJAG_03831":null,"SJAG_03860":null,"SJAG_03883":null,"SJAG_03968":null,"SJAG_03970":null,"SJAG_04151":null,"SJAG_04309":null,"SJAG_04429":null,"SJAG_04573":null,"SJAG_04600":null,"SJAG_04612":null,"SJAG_04619":null,"SJAG_04783":null,"SJAG_04857":null,"SJAG_04915":null,"SJAG_04966":null,"SJAG_04990":null,"SJAG_05012":null,"SJAG_05022":null,"SJAG_05236":null,"SJAG_05264":null,"SJAG_05274":null,"SJAG_05323":null,"SJAG_05340":null,"SJAG_06309":null},"genotype_count":0,"in_subsets":["mf_goslim_japonicus"],"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0140096"},{"rel_name":"is_a","termid":"GO:0016746"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016740","GO:0016746","GO:0003674","GO:0003824","GO:0140096"],"is_obsolete":false,"name":"ubiquitin-like protein transferase activity","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"secondary_identifiers":["Reactome:R-HSA-688137","GO:0008639","GO:0008640","Reactome:R-HSA-5678490"],"synonyms":[{"name":"E2","type":"broad"},{"name":"E3","type":"related"},{"name":"small conjugating protein ligase activity","type":"narrow"},{"name":"small conjugating protein transferase activity","type":"exact"},{"name":"small protein conjugating enzyme activity","type":"narrow"},{"name":"ubiquitin-like conjugating enzyme activity","type":"narrow"},{"name":"ubiquitin-like-protein ligase activity","type":"narrow"}],"termid":"GO:0019787","terms_by_termid":{"GO:0019776":null,"GO:0034450":null,"GO:0061630":null,"GO:0061631":null,"GO:0061651":null,"GO:0061654":null,"GO:0061656":null,"GO:0061659":null,"GO:0061665":null,"GO:0140082":null,"GO:0140850":null,"GO:0140851":null}}


id: MOD:00789
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"modification from Unimod - isotopic label ICPL method - The paper describes an H/D labeling strategy whereas the commercial product follows a C/13C labeling strategy. The digest is typically applied AFTER ICPL_light/heavy labeling, only Protein N-term labeling and Lys-specific labeling is applied.","definition_xrefs":["URL:http://www.serva.de/products/sheets/39230-E.pdf","PubMed:15602776","Unimod:364"],"direct_ancestors":[{"relation_name":"is_a","term_name":"isotope tagged reagent derivatized residue","termid":"MOD:01426"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Bruker Daltonics SERVA-ICPL(TM) quantification chemistry, heavy form","synonyms":[{"name":"Bruker Daltonics SERVA-ICPL(TM) quantification chemistry, heavy form","type":"related"},{"name":"ICPL:13C(6)","type":"related"}],"termid":"MOD:00789"}


id: GO:0003854
data:
  {"annotated_genes":["SJAG_02855"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[105221],"is_not":false,"summary":null,"term":"GO:0003854"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: a 3-beta-hydroxy-delta(5)-steroid + NAD+ = a 3-oxo-delta(5)-steroid + NADH + H+.","definition_xrefs":["EC:1.1.1.145"],"direct_ancestors":[{"relation_name":"is_a","term_name":"steroid dehydrogenase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor","termid":"GO:0033764"}],"gene_count":1,"genes_by_uniquename":{"SJAG_02855":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016491"],"is_obsolete":false,"name":"3-beta-hydroxy-delta5-steroid dehydrogenase activity","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["MetaCyc:1.1.1.145-RXN","Reactome:R-HSA-193789","Reactome:R-HSA-192097","Reactome:R-HSA-193816","Reactome:R-HSA-196350","Reactome:R-HSA-196372","RHEA:24076"],"synonyms":[{"name":"3-beta-hydroxy-5-ene steroid dehydrogenase activity","type":"related"},{"name":"3-beta-hydroxy-D5-steroid dehydrogenase activity","type":"exact"},{"name":"3beta-HSDH","type":"related"},{"name":"3beta-hydroxy steroid dehydrogenase/isomerase activity","type":"related"},{"name":"3beta-hydroxy-5-ene steroid dehydrogenase activity","type":"related"},{"name":"3beta-hydroxy-5-ene-steroid dehydrogenase activity","type":"related"},{"name":"3beta-hydroxy-5-ene-steroid oxidoreductase activity","type":"related"},{"name":"3beta-hydroxy-delta5-C27-steroid dehydrogenase/isomerase activity","type":"related"},{"name":"3beta-hydroxy-delta5-C27-steroid oxidoreductase","type":"broad"},{"name":"3beta-hydroxy-delta5-steroid dehydrogenase activity","type":"related"},{"name":"3beta-hydroxy-delta5-steroid:NAD+ 3-oxidoreductase activity","type":"related"},{"name":"5-ene-3-beta-hydroxysteroid dehydrogenase activity","type":"related"},{"name":"delta5-3beta-hydroxysteroid dehydrogenase activity","type":"related"},{"name":"progesterone reductase activity","type":"broad"},{"name":"steroid-delta5-3beta-ol dehydrogenase activity","type":"related"}],"termid":"GO:0003854","terms_by_termid":{"GO:0003854":null}}


id: GO:0006669
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of sphinganine-1-phosphate, the phosphorylated derivative of D-erythro-2-amino-1,3-octadecanediol.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"sphinganine-1-phosphate metabolic process","termid":"GO:0006668"},{"relation_name":"is_a","term_name":"phospholipid biosynthetic process","termid":"GO:0008654"},{"relation_name":"is_a","term_name":"sphingolipid biosynthetic process","termid":"GO:0030148"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006629"}],"interesting_parent_ids":["GO:0008150","GO:0006629"],"is_obsolete":false,"name":"sphinganine-1-phosphate biosynthetic process","synonyms":[{"name":"dihydrosphingosine-1-phosphate biosynthesis","type":"exact"},{"name":"dihydrosphingosine-1-phosphate biosynthetic process","type":"exact"},{"name":"sphinganine-1-phosphate anabolism","type":"exact"},{"name":"sphinganine-1-phosphate biosynthesis","type":"exact"},{"name":"sphinganine-1-phosphate formation","type":"exact"},{"name":"sphinganine-1-phosphate synthesis","type":"exact"}],"termid":"GO:0006669"}


id: FYPO:0001544
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of sulfur measured in a cell is normal (i.e. indistinguishable from wild type).","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal level of substance in cell during vegetative growth","termid":"FYPO:0001316"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001312"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0001312","FYPO:0001320","FYPO:0000257","FYPO:0000002"],"is_obsolete":false,"name":"normal cellular sulfur level","synonyms":[{"name":"normal cellular sulfur accumulation","type":"related"},{"name":"normal cellular sulfur level during mitotic cell cycle","type":"related"},{"name":"normal cellular sulfur level during vegetative growth","type":"exact"},{"name":"normal cellular sulphur level","type":"exact"}],"termid":"FYPO:0001544"}


id: PBO:0055038
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2453","termid":"PBO:0055038"}


id: CHEBI:18385
data:
  {"annotation_feature_type":"gene","cv_name":"chebi_ontology","direct_ancestors":[{"relation_name":"is_a","term_name":"chemical entity","termid":"CHEBI:24431"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"thiamine(1+)","termid":"CHEBI:18385"}


id: PBO:0064241
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"phospholipase C zeta 1","termid":"PBO:0064241"}


id: PBO:0036135
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_histone_acetylation_during_vegetative_growth","termid":"PBO:0036135"}


id: GO:1905316
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The developmental process by which a superior endocardial cushion is generated and organized.","definition_xrefs":["PMID:17050629","GO_REF:0000083","GOC:BHF","GOC:rl","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"endocardial cushion morphogenesis","termid":"GO:0003203"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"superior endocardial cushion morphogenesis","synonyms":[{"name":"dorsal endocardial cushion morphogenesis","type":"exact"}],"termid":"GO:1905316"}


id: GO:0050587
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: chloride + O2 = chlorite.","definition_xrefs":["EC:1.13.11.49","RHEA:21404"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen","termid":"GO:0016702"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003824","GO:0016491","GO:0003674"],"is_obsolete":false,"name":"chlorite O2-lyase activity","secondary_identifiers":["GO:0030065","KEGG_REACTION:R05721","UM-BBD_reactionID:r0982","MetaCyc:1.13.11.49-RXN"],"synonyms":[{"name":"chloride:oxygen oxidoreductase activity","type":"related"},{"name":"chlorite dismutase activity","type":"related"}],"termid":"GO:0050587"}


id: PBO:0058035
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 4256","termid":"PBO:0058035"}


id: PBO:0071192
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L23a pseudogene 33","termid":"PBO:0071192"}


id: GO:0008623
data:
  {"annotated_genes":["SJAG_04879"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[70260],"is_not":false,"summary":null,"term":"GO:0008623"}]},"cv_name":"cellular_component","definition":"An ISWI complex that contains an ATPase subunit of the ISWI family (SNF2H in mammals, Isw2 in S. cerevisiae), an ACF1 homolog, and additional small histone fold subunits (generally two of these, but Xenopus has only one and some additional non-conserved subunits). CHRAC plays roles in the regulation of RNA polymerase II transcription and in DNA replication and repair.","definition_xrefs":["GOC:krc","PMID:16568949","PMID:21810179","PMID:15284901","PMID:9252192","GOC:bf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ISWI-type complex","termid":"GO:0031010"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04879":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005634"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0005694"}],"interesting_parent_ids":["GO:0005694","GO:0005634","GO:0005575","GO:0032991"],"is_obsolete":false,"name":"CHRAC","references_by_uniquename":{"GO_REF:0000033":null},"secondary_identifiers":["GO:0016588"],"synonyms":[{"name":"ISW2 complex","type":"narrow"},{"name":"chromatin accessibility complex","type":"exact"}],"termid":"GO:0008623","terms_by_termid":{"GO:0008623":null}}


id: FYPO:0007509
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the trimethylation of lysine at position 9 of histone H3 in silent mating-type cassettes occurs to a greater extent than normal.","definition_xrefs":["PMID:17434129","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased histone H3-K9 trimethylation during vegetative growth","termid":"FYPO:0000879"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0002494"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0002274"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001320","FYPO:0005447","FYPO:0002274","FYPO:0001985","FYPO:0002494"],"is_obsolete":false,"name":"increased histone H3-K9 trimethylation at silent mating-type cassette during vegetative growth","synonyms":[{"name":"increased histone H3 K9 trimethylation at silent mating-type cassette during vegetative growth","type":"exact"},{"name":"increased histone H3-K9 trimethylation at mating-type region heterochromatin during vegetative growth","type":"exact"},{"name":"increased histone H3-K9 trimethylation at silent mating-type cassette during mitotic cell cycle","type":"related"},{"name":"increased histone H3K9 trimethylation at silent mating-type cassette during vegetative growth","type":"exact"},{"name":"increased histone H3K9me3 at silent mating-type cassette during vegetative growth","type":"exact"},{"name":"increased histone lysine H3 K9 trimethylation at silent mating-type cassette during vegetative growth","type":"exact"}],"termid":"FYPO:0007509"}


id: PBO:0075606
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"spondin 1","termid":"PBO:0075606"}


id: GO:0003183
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which the structure of the mitral valve is generated and organized.","definition_xrefs":["GOC:mtg_heart"],"direct_ancestors":[{"relation_name":"is_a","term_name":"atrioventricular valve morphogenesis","termid":"GO:0003181"},{"relation_name":"part_of","term_name":"mitral valve development","termid":"GO:0003174"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"mitral valve morphogenesis","termid":"GO:0003183"}


id: GO:1904021
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of G protein-coupled receptor internalization.","definition_xrefs":["PMID:24732013","GOC:TermGenie","GO_REF:0000058"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of receptor internalization","termid":"GO:0002091"},{"relation_name":"is_a","term_name":"regulation of G protein-coupled receptor internalization","termid":"GO:1904020"},{"relation_name":"negatively_regulates","term_name":"G protein-coupled receptor internalization","termid":"GO:0002031"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0016192"},{"rel_name":"negatively_regulates","termid":"GO:0006810"},{"rel_name":"regulates","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"negatively_regulates","termid":"GO:0016192"},{"rel_name":"regulates","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0006810","GO:0023052","GO:0008150","GO:0016192"],"is_obsolete":false,"name":"negative regulation of G protein-coupled receptor internalization","synonyms":[{"name":"down regulation of G-protein coupled receptor internalization","type":"exact"},{"name":"down-regulation of G-protein coupled receptor internalization","type":"exact"},{"name":"downregulation of G-protein coupled receptor internalization","type":"exact"},{"name":"inhibition of G-protein coupled receptor internalization","type":"narrow"},{"name":"negative regulation of G-protein coupled receptor internalization","type":"exact"}],"termid":"GO:1904021"}


id: PBO:0065266
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"proline rich 27","termid":"PBO:0065266"}


id: GO:0033593
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A heterodimeric protein complex formed of BRCA2 and MAGE-D1; may mediate the synergistic activities of the two proteins in regulating cell growth.","definition_xrefs":["PMID:15930293"],"direct_ancestors":[{"relation_name":"is_a","term_name":"intracellular protein-containing complex","termid":"GO:0140535"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0032991","GO:0005575"],"is_obsolete":false,"name":"BRCA2-MAGE-D1 complex","termid":"GO:0033593"}


id: PBO:0087564
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Subunit of structure-specific Mms4p-Mus81p endonuclease; cleaves branched DNA; involved in DNA repair, replication fork stability, and joint molecule formation/resolution during meiotic recombination; promotes template switching during break-induced replication (BIR), causing non-reciprocal translocations (NRTs); helix-hairpin-helix protein; phosphorylation of non-catalytic subunit Mms4p by Cdc28p and Cdcp during mitotic cell cycle activates function of Mms4p-Mus81p","termid":"PBO:0087564"}


id: PATO:0001654
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"An alignment quality inhering in a bearer by virtue of the bearer's being in a improper spatial positioning with respect to an additional entity.","definition_xrefs":["PATOC:GVG"],"direct_ancestors":[{"relation_name":"is_a","term_name":"alignment","termid":"PATO:0001652"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"misaligned with","synonyms":[{"name":"misaligned ","type":"exact"},{"name":"unaligned with","type":"exact"}],"termid":"PATO:0001654"}


id: PR:P36606
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- sod2 gene.","definition_xrefs":["UniProtKB:P36606","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Na(+)/H(+) antiporter (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC977.10","synonyms":[{"name":"Spom972h-sod2","type":"exact"}],"termid":"PR:P36606"}


id: GO:0002709
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate, or extent of T cell mediated immunity.","definition_xrefs":["GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of lymphocyte mediated immunity","termid":"GO:0002706"},{"relation_name":"is_a","term_name":"regulation of adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains","termid":"GO:0002822"},{"relation_name":"regulates","term_name":"T cell mediated immunity","termid":"GO:0002456"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of T cell mediated immunity","synonyms":[{"name":"regulation of T lymphocyte mediated immunity","type":"exact"},{"name":"regulation of T-cell mediated immunity","type":"exact"},{"name":"regulation of T-lymphocyte mediated immunity","type":"exact"}],"termid":"GO:0002709"}


id: PBO:0002828
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pseudogene wtf element Wtf1","termid":"PBO:0002828"}


id: PBO:0076304
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"synaptogyrin 2","termid":"PBO:0076304"}


id: GO:0046646
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of gamma-delta T cell proliferation.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of T cell proliferation","termid":"GO:0042129"},{"relation_name":"is_a","term_name":"regulation of gamma-delta T cell activation","termid":"GO:0046643"},{"relation_name":"regulates","term_name":"gamma-delta T cell proliferation","termid":"GO:0046630"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of gamma-delta T cell proliferation","synonyms":[{"name":"regulation of gamma-delta T lymphocyte proliferation","type":"exact"},{"name":"regulation of gamma-delta T-cell proliferation","type":"exact"},{"name":"regulation of gamma-delta T-lymphocyte proliferation","type":"exact"}],"termid":"GO:0046646"}


id: PBO:0050491
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"homeobox B1","termid":"PBO:0050491"}


id: GO:0035552
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Removal of the methyl group from one or more nucleotides within a single-stranded DNA molecule involving the oxidation (i.e. electron loss) of one or more atoms.","definition_xrefs":["GOC:rl","PMID:18775698","GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"DNA demethylation","termid":"GO:0080111"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006259"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006259","GO:0008150"],"is_obsolete":false,"name":"oxidative single-stranded DNA demethylation","synonyms":[{"name":"oxidative ssDNA demethylation","type":"exact"}],"termid":"GO:0035552"}


id: PBO:0077416
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transmembrane protein 151A","termid":"PBO:0077416"}


id: PBO:0042888
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cilia and flagella associated protein 410","termid":"PBO:0042888"}


id: GO:0048029
data:
  {"annotated_genes":["SJAG_04334","SJAG_00605","SJAG_00839","SJAG_04495","SJAG_04571","SJAG_03535"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[69901,76594],"is_not":false,"summary":null,"term":"GO:0048029"},{"annotations":[93343,89933],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0005536"},{"annotations":[108848,113470],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0005537"}]},"cv_name":"molecular_function","definition":"Binding to a monosaccharide. Monosaccharides are the simplest carbohydrates; they are polyhydroxy aldehydes H[CH(OH)]nC(=O)H or polyhydroxy ketones H[CHOH]nC(=O)[CHOH]mH with three or more carbon atoms. They form the constitutional repeating units of oligo- and polysaccharides.","definition_xrefs":["GOC:jid"],"direct_ancestors":[{"relation_name":"is_a","term_name":"carbohydrate binding","termid":"GO:0030246"},{"relation_name":"is_a","term_name":"small molecule binding","termid":"GO:0036094"}],"gene_count":6,"genes_by_uniquename":{"SJAG_00605":null,"SJAG_00839":null,"SJAG_03535":null,"SJAG_04334":null,"SJAG_04495":null,"SJAG_04571":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0005488","GO:0003674"],"is_obsolete":false,"name":"monosaccharide binding","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"termid":"GO:0048029","terms_by_termid":{"GO:0005536":null,"GO:0005537":null,"GO:0048029":null}}


id: GO:0005715
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"An electron dense structure that is associated with meiotic chromosomes in pachytene during meiosis I.","definition_xrefs":["GOC:elh"],"direct_ancestors":[{"relation_name":"is_a","term_name":"recombination nodule","termid":"GO:0005713"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005634"},{"rel_name":"part_of","termid":"GO:0005694"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005694","GO:0005575","GO:0005634"],"is_obsolete":false,"name":"late recombination nodule","termid":"GO:0005715"}


id: PBO:0030081
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_protein_localization_to_cell_tip","termid":"PBO:0030081"}


id: PBO:0039997
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ADP ribosylation factor like GTPase 9","termid":"PBO:0039997"}


id: PBO:0073143
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SEC23 homolog A, COPII coat complex component","termid":"PBO:0073143"}


id: PBO:0067199
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 263, pseudogene","termid":"PBO:0067199"}


id: GO:0051573
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that stops, prevents, or reduces the frequency, rate or extent of the covalent addition of a methyl group to the lysine at position 9 of histone H3.","definition_xrefs":["GOC:ai"],"gene_count":0,"genotype_count":0,"name":"obsolete negative regulation of histone H3-K9 methylation (obsolete GO:0051573)","synonyms":[{"name":"down regulation of histone H3-K9 methylation","type":"exact"},{"name":"down-regulation of histone H3-K9 methylation","type":"exact"},{"name":"downregulation of histone H3-K9 methylation","type":"exact"},{"name":"inhibition of histone H3-K9 methylation","type":"narrow"}],"termid":"GO:0051573"}


id: GO:0018853
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: perillic acid + CoA-SH + ATP = H2O + ADP/AMP + mono/diphosphate + perillyl-CoA.","definition_xrefs":["UM-BBD_reactionID:r0731"],"gene_count":0,"genotype_count":0,"name":"obsolete perillyl-CoA synthetase activity (obsolete GO:0018853)","secondary_identifiers":["EC:6.2.1.-"],"synonyms":[{"name":"perillyl-CoA synthetase activity","type":"exact"}],"termid":"GO:0018853"}


id: GO:0036521
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process in which an organism modulates the frequency, rate or extent of protein localisation to the host phagosome. The host is defined as the larger of the organisms involved in a symbiotic interaction.","definition_xrefs":["GOC:bf","GOC:PARL","PMID:25063865"],"direct_ancestors":[{"relation_name":"is_a","term_name":"symbiont-mediated perturbation of host cellular process","termid":"GO:0044068"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"modulation by symbiont of host protein localization to phagocytic vesicle","synonyms":[{"name":"modulation by symbiont of host protein localisation to phagosome","type":"related"}],"termid":"GO:0036521"}


id: GO:0048195
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The aggregation, arrangement and bonding together of a set of components to form a membrane priming complex. An incoming coat component recognizes both GTPase and a membrane protein to form the priming complex.","definition_xrefs":["ISBN:0716731363","PMID:10219233","GOC:jid"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein-containing complex assembly","termid":"GO:0065003"},{"relation_name":"part_of","term_name":"Golgi transport vesicle coating","termid":"GO:0048200"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0061024"},{"rel_name":"is_a","termid":"GO:0065003"},{"rel_name":"part_of","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0016192"},{"rel_name":"part_of","termid":"GO:0044085"}],"interesting_parent_ids":["GO:0065003","GO:0016192","GO:0044085","GO:0061024","GO:0006810","GO:0008150"],"is_obsolete":false,"name":"Golgi membrane priming complex assembly","synonyms":[{"name":"formation of Golgi membrane priming complex","type":"exact"},{"name":"formation of dictyosome membrane priming complex","type":"narrow"}],"termid":"GO:0048195"}


id: PBO:0043434
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cornichon family AMPA receptor auxiliary protein 4","termid":"PBO:0043434"}


id: PBO:0017415
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-derived_into","termid":"PBO:0017415"}


id: PBO:0076439
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TATA-box binding protein associated factor 12","termid":"PBO:0076439"}


id: PBO:0001873
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transcription coactivator PC4","termid":"PBO:0001873"}


id: PBO:0042117
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"coiled-coil domain containing 188B, pseudogene","termid":"PBO:0042117"}


id: GO:0032005
data:
  {"annotated_genes":["SJAG_02379","SJAG_00993","SJAG_00990","SJAG_02923","SJAG_01345","SJAG_03340","SJAG_03623","SJAG_02233","SJAG_00781","SJAG_03453","SJAG_01718"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[86330,101583,106474,110610],"is_not":false,"summary":null,"term":"GO:0032005"},{"annotations":[88734],"is_not":false,"rel_names":["regulates","negatively_regulates"],"summary":null,"term":"GO:0090029"},{"annotations":[102325,91743,84758,88735,101477,92404,87618],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0071507"}]},"cv_name":"biological_process","definition":"The series of molecular signals that bring about the relay, amplification or dampening of a signal generated in response to a cue, such as starvation or pheromone exposure, in organisms that undergo conjugation with cellular fusion.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"signal transduction","termid":"GO:0007165"},{"relation_name":"is_a","term_name":"positive regulation of conjugation with cellular fusion","termid":"GO:0031139"}],"gene_count":11,"genes_by_uniquename":{"SJAG_00781":null,"SJAG_00990":null,"SJAG_00993":null,"SJAG_01345":null,"SJAG_01718":null,"SJAG_02233":null,"SJAG_02379":null,"SJAG_02923":null,"SJAG_03340":null,"SJAG_03453":null,"SJAG_03623":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0000747"},{"rel_name":"part_of","termid":"GO:0023052"},{"rel_name":"positively_regulates","termid":"GO:0000747"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0000747","GO:0023052"],"is_obsolete":false,"name":"signal transduction involved in positive regulation of conjugation with cellular fusion","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0032005","terms_by_termid":{"GO:0032005":null,"GO:0071507":null,"GO:0090029":null}}


id: SO:0000428
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"The U5 segment of the three-prime long terminal repeat.","direct_ancestors":[{"relation_name":"is_a","term_name":"U5_LTR_region","termid":"SO:0000422"},{"relation_name":"is_a","term_name":"five_prime_LTR_component","termid":"SO:0000850"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"U5_five_prime_LTR_region","synonyms":[{"name":"U5 5' long terminal repeat region","type":"exact"},{"name":"U5 five prime LTR region","type":"exact"}],"termid":"SO:0000428"}


id: SO:0002248
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A region of DNA that is predicted to be translated and transcribed into a protein by a protein detection algorithm that does not get transcribed in nature.","definition_xrefs":["PMID:21771858"],"direct_ancestors":[{"relation_name":"is_a","term_name":"experimental_feature","termid":"SO:0001410"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"spurious_protein","synonyms":[{"name":"spurious protein","type":"exact"}],"termid":"SO:0002248"}


id: SO:0000657
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A region of sequence containing one or more repeat units.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"has_part","term_name":"repeat_unit","termid":"SO:0000726"},{"relation_name":"is_a","term_name":"biological_region","termid":"SO:0001411"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"repeat_region","synonyms":[{"name":"INSDC_feature:repeat_region","type":"broad"},{"name":"INSDC_qualifier:other","type":"exact"},{"name":"repeat region","type":"exact"}],"termid":"SO:0000657"}


id: PBO:0079463
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"trans-golgi network vesicle protein 23 homolog C","termid":"PBO:0079463"}


id: PBO:0065028
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"peroxiredoxin 4 pseudogene 2","termid":"PBO:0065028"}


id: PBO:0067375
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 477, pseudogene","termid":"PBO:0067375"}


id: PATO:0000099
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0000099 plant growth hormone sensitivity (obsolete PATO:0000099)","termid":"PATO:0000099"}


id: PBO:0003815
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"flavin dependent monooxygenase (predicted)","termid":"PBO:0003815"}


id: GO:0141023
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process in which a symbiont alters or subverts host cell adhesion ito its extracellular matrix. The host is defined as the larger of the organisms involved in a symbiotic interaction.","definition_xrefs":["GOC:curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"symbiont-mediated perturbation of host cellular process","termid":"GO:0044068"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"symbiont-mediated disruption of host cell-cell adhesion","synonyms":[{"name":"disruption by symbiont of host cell-cell adhesion","type":"exact"}],"termid":"GO:0141023"}


id: PR:Q9UUF3
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPBC17A3.03c gene.","definition_xrefs":["UniProtKB:Q9UUF3","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tyrosine-protein phosphatase C17A3.03c (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC17A3.03c","synonyms":[{"name":"Spom972h-SPBC17A3.03c","type":"exact"}],"termid":"PR:Q9UUF3"}


id: PR:P05511
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPMIT.06 gene.","definition_xrefs":["PRO:DNx","UniProtKB:P05511"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized 91 kDa protein in cob intron (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPMIT.06","synonyms":[{"name":"Spom972h-SPMIT.06","type":"exact"}],"termid":"PR:P05511"}


id: FYPO:0004732
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A physical cellular phenotype observed in the vegetative growth phase of the life cycle in which cells contain fewer astral microtubules than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"microtubules present in decreased numbers","termid":"FYPO:0003430"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0002399"},{"rel_name":"output_of","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"output_of","termid":"FYPO:0000054"}],"interesting_parent_ids":["FYPO:0000054","FYPO:0002399","FYPO:0005447","FYPO:0001985","FYPO:0000002","FYPO:0001320"],"is_obsolete":false,"name":"astral microtubules present in decreased numbers","synonyms":[{"name":"astral microtubules present in decreased numbers during mitotic cell cycle","type":"related"},{"name":"astral microtubules present in decreased numbers during vegetative growth","type":"exact"},{"name":"astral microtubules present in reduced numbers","type":"exact"},{"name":"decreased level of astral microtubules","type":"exact"},{"name":"reduced number of astral microtubules","type":"exact"}],"termid":"FYPO:0004732"}


id: GO:0010793
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of the directed movement of mRNA from the nucleus to the cytoplasm.","definition_xrefs":["GOC:dph","GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of RNA export from nucleus","termid":"GO:0046831"},{"relation_name":"is_a","term_name":"regulation of ribonucleoprotein complex localization","termid":"GO:2000197"},{"relation_name":"regulates","term_name":"mRNA export from nucleus","termid":"GO:0006406"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0006913"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0006810","GO:0008150","GO:0006913"],"is_obsolete":false,"name":"regulation of mRNA export from nucleus","termid":"GO:0010793"}


id: PBO:0085941
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein of unknown function; mutant phenotype suggests a potential role in vacuolar function; green fluorescent protein (GFP)-fusion protein localizes to the cell periphery, cytoplasm, bud, and bud neck; relocalizes from bud neck to cytoplasm upon DNA replication stress; SVL3 has a paralog, PAM1, that arose from the whole genome duplication","termid":"PBO:0085941"}


id: GO:0002841
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate, or extent of a T cell mediated immune response to tumor cell.","definition_xrefs":["GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of T cell mediated immunity","termid":"GO:0002710"},{"relation_name":"is_a","term_name":"negative regulation of immune response to tumor cell","termid":"GO:0002838"},{"relation_name":"is_a","term_name":"regulation of T cell mediated immune response to tumor cell","termid":"GO:0002840"},{"relation_name":"negatively_regulates","term_name":"T cell mediated immune response to tumor cell","termid":"GO:0002424"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of T cell mediated immune response to tumor cell","synonyms":[{"name":"down regulation of T cell mediated immune response to tumor cell","type":"exact"},{"name":"down-regulation of T cell mediated immune response to tumor cell","type":"exact"},{"name":"downregulation of T cell mediated immune response to tumor cell","type":"exact"},{"name":"inhibition of T cell mediated immune response to tumor cell","type":"narrow"},{"name":"negative regulation of T cell mediated immune response to tumour cell","type":"exact"},{"name":"negative regulation of T lymphocyte mediated immune response to tumor cell","type":"exact"},{"name":"negative regulation of T-cell mediated immune response to tumor cell","type":"exact"},{"name":"negative regulation of T-lymphocyte mediated immune response to tumor cell","type":"exact"}],"termid":"GO:0002841"}


id: PBO:0074637
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nucleolar RNA, H/ACA box 30B","termid":"PBO:0074637"}


id: GO:1904445
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of establishment of Sertoli cell barrier.","definition_xrefs":["PMID:18057314","GO_REF:0000058","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of cell development","termid":"GO:0010721"},{"relation_name":"is_a","term_name":"negative regulation of epithelial cell differentiation","termid":"GO:0030857"},{"relation_name":"is_a","term_name":"regulation of establishment of Sertoli cell barrier","termid":"GO:1904444"},{"relation_name":"is_a","term_name":"negative regulation of reproductive process","termid":"GO:2000242"},{"relation_name":"negatively_regulates","term_name":"establishment of Sertoli cell barrier","termid":"GO:0097368"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of establishment of Sertoli cell barrier","synonyms":[{"name":"down regulation of establishment of BTB","type":"exact"},{"name":"down regulation of establishment of SCB","type":"exact"},{"name":"down regulation of establishment of Sertoli cell barrier","type":"exact"},{"name":"down regulation of establishment of blood-testis barrier","type":"exact"},{"name":"down-regulation of establishment of BTB","type":"exact"},{"name":"down-regulation of establishment of SCB","type":"exact"},{"name":"down-regulation of establishment of Sertoli cell barrier","type":"exact"},{"name":"down-regulation of establishment of blood-testis barrier","type":"exact"},{"name":"downregulation of establishment of BTB","type":"exact"},{"name":"downregulation of establishment of SCB","type":"exact"},{"name":"downregulation of establishment of Sertoli cell barrier","type":"exact"},{"name":"downregulation of establishment of blood-testis barrier","type":"exact"},{"name":"inhibition of establishment of BTB","type":"narrow"},{"name":"inhibition of establishment of SCB","type":"narrow"},{"name":"inhibition of establishment of Sertoli cell barrier","type":"narrow"},{"name":"inhibition of establishment of blood-testis barrier","type":"narrow"},{"name":"negative regulation of establishment of BTB","type":"exact"},{"name":"negative regulation of establishment of SCB","type":"exact"},{"name":"negative regulation of establishment of blood-testis barrier","type":"exact"}],"termid":"GO:1904445"}


id: MOD:01293
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-asparagine residue to L-aspartic acid with one (18)O.","definition_xrefs":["PubMed:8382902","Unimod:366#N","OMSSA:139"],"direct_ancestors":[{"relation_name":"derives_from","term_name":"deamidated L-asparagine","termid":"MOD:00684"},{"relation_name":"is_a","term_name":"1x(18)O labeled deamidated residue","termid":"MOD:00852"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"1x(18)O labeled deamidated L-asparagine","synonyms":[{"name":"Deamidated:18O(1)","type":"related"},{"name":"Deamidation in presence of O18","type":"related"},{"name":"oxy18","type":"exact"}],"termid":"MOD:01293"}


id: PBO:0029090
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_microtubule_bundle_formation","termid":"PBO:0029090"}


id: PBO:0031278
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_cellular_response_to_nitrogen_starvation","termid":"PBO:0031278"}


id: PBO:0048036
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"follicle stimulating hormone subunit beta","termid":"PBO:0048036"}


id: PBO:0002067
data:
  {"annotation_feature_type":"gene","cv_name":"disease_associated","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Berardinelli-Seip congenital lipodystrophy type 2, Silver spastic paraplegia syndrome, distal hereditary motor neuropathy type V","termid":"PBO:0002067"}


id: PBO:0052540
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"kallikrein related peptidase 13","termid":"PBO:0052540"}


id: PBO:0084201
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"HMG-CoA reductase; catalyzes conversion of HMG-CoA to mevalonate, which is a rate-limiting step in sterol biosynthesis; one of two isozymes; localizes to nuclear envelope; overproduction induces formation of karmellae; forms foci at nuclear periphery upon DNA replication stress; HMG1 has a paralog, HMG2, that arose from the whole genome duplication; human homolog HMGCR can complement yeast hmg1 mutant","termid":"PBO:0084201"}


id: PBO:0004061
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"vacuolar membrane amino acid uptake transporter Fnx1","termid":"PBO:0004061"}


id: GO:0016836
data:
  {"annotated_genes":["SJAG_02084","SJAG_04843","SJAG_06611","SJAG_04674","SJAG_02293","SJAG_01630","SJAG_04098","SJAG_01574","SJAG_02369","SJAG_03669","SJAG_03588","SJAG_00461","SJAG_03124","SJAG_03213","SJAG_02689","SJAG_02988","SJAG_05007","SJAG_01300","SJAG_03243","SJAG_04404","SJAG_02107","SJAG_05283","SJAG_02106","SJAG_01372","SJAG_00337","SJAG_00592","SJAG_00305","SJAG_04107"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[96027],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004317"},{"annotations":[73804],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0019171"},{"annotations":[86572],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0003855"},{"annotations":[96114],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0003861"},{"annotations":[72620,73126],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0003994"},{"annotations":[76291],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0047453"},{"annotations":[76327],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004089"},{"annotations":[71093],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004160"},{"annotations":[77763],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004333"},{"annotations":[73754,88541,88542,72234],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0019172"},{"annotations":[92043],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004409"},{"annotations":[74744],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004424"},{"annotations":[76986,78496],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0046570"},{"annotations":[100670,100669,100671],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004634"},{"annotations":[71453],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004655"},{"annotations":[76630],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004664"},{"annotations":[78154],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004730"},{"annotations":[78486],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0061503"},{"annotations":[72910],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004834"},{"annotations":[73886],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004852"},{"annotations":[101088],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0102158"}]},"cv_name":"molecular_function","definition":"Catalysis of the cleavage of a carbon-oxygen bond by elimination of water.","definition_xrefs":["EC:4.2.1.-"],"direct_ancestors":[{"relation_name":"is_a","term_name":"carbon-oxygen lyase activity","termid":"GO:0016835"}],"gene_count":28,"genes_by_uniquename":{"SJAG_00305":null,"SJAG_00337":null,"SJAG_00461":null,"SJAG_00592":null,"SJAG_01300":null,"SJAG_01372":null,"SJAG_01574":null,"SJAG_01630":null,"SJAG_02084":null,"SJAG_02106":null,"SJAG_02107":null,"SJAG_02293":null,"SJAG_02369":null,"SJAG_02689":null,"SJAG_02988":null,"SJAG_03124":null,"SJAG_03213":null,"SJAG_03243":null,"SJAG_03588":null,"SJAG_03669":null,"SJAG_04098":null,"SJAG_04107":null,"SJAG_04404":null,"SJAG_04674":null,"SJAG_04843":null,"SJAG_05007":null,"SJAG_05283":null,"SJAG_06611":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016829"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016829","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"hydro-lyase activity","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"secondary_identifiers":["Reactome:R-HSA-9014627"],"termid":"GO:0016836","terms_by_termid":{"GO:0003855":null,"GO:0003861":null,"GO:0003994":null,"GO:0004089":null,"GO:0004160":null,"GO:0004317":null,"GO:0004333":null,"GO:0004409":null,"GO:0004424":null,"GO:0004634":null,"GO:0004655":null,"GO:0004664":null,"GO:0004730":null,"GO:0004834":null,"GO:0004852":null,"GO:0019171":null,"GO:0019172":null,"GO:0046570":null,"GO:0047453":null,"GO:0061503":null,"GO:0102158":null}}


id: PBO:0004963
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"galactose-1-phosphate uridylyltransferase Gal7","termid":"PBO:0004963"}


id: FYPO:0003780
data:
  {"alleles_by_uniquename":{"SJAG_03250:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_03250","name":"sst4delta","uniquename":"SJAG_03250:allele-1"}},"annotation_feature_type":"genotype","cv_annotations":{"single_locus_phenotype":[{"annotations":[114228],"is_not":false,"summary":null,"term":"FYPO:0003780"}]},"cv_name":"fission_yeast_phenotype","definition":"A physical cellular phenotype observed in the vegetative growth phase of the life cycle in which the size, shape, or structure of all or part of the nuclear envelope is normal (i.e. indistinguishable from wild type) during mitosis.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal nuclear envelope morphology","termid":"FYPO:0003751"}],"gene_count":1,"genes_by_uniquename":{"SJAG_03250":null},"genotype_count":1,"genotypes_by_uniquename":{"sst4delta":{"display_name":"sst4delta","display_uniquename":"sst4delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03250:allele-1","expression":"Null"}]}]}},"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0000002","FYPO:0000257"],"is_obsolete":false,"name":"normal nuclear envelope morphology during mitosis","references_by_uniquename":{"PMID:32109380":null},"single_locus_annotated_genes":["SJAG_03250"],"single_locus_genotype_uniquenames":["sst4delta"],"synonyms":[{"name":"normal nuclear envelope morphology during mitosis during vegetative growth","type":"exact"},{"name":"normal nuclear envelope morphology during mitotic M phase","type":"related"},{"name":"normal nuclear envelope morphology during mitotic nuclear division","type":"exact"},{"name":"normal nuclear membrane morphology during mitosis","type":"narrow"}],"termid":"FYPO:0003780","terms_by_termid":{"FYPO:0003780":null}}


id: GO:0030115
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A crystalline protein layer surrounding some bacteria.","definition_xrefs":["ISBN:0815108893","GOC:mlg"],"direct_ancestors":[{"relation_name":"is_a","term_name":"external encapsulating structure","termid":"GO:0030312"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"S-layer","secondary_identifiers":["Wikipedia:S-layer"],"termid":"GO:0030115"}


id: GO:1903319
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of protein maturation.","definition_xrefs":["GOC:TermGenie","GOC:vw","GO_REF:0000058"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of gene expression","termid":"GO:0010628"},{"relation_name":"is_a","term_name":"positive regulation of protein metabolic process","termid":"GO:0051247"},{"relation_name":"is_a","term_name":"regulation of protein maturation","termid":"GO:1903317"},{"relation_name":"positively_regulates","term_name":"protein maturation","termid":"GO:0051604"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0051604"},{"rel_name":"regulates","termid":"GO:0010467"},{"rel_name":"positively_regulates","termid":"GO:0010467"},{"rel_name":"positively_regulates","termid":"GO:0051604"}],"interesting_parent_ids":["GO:0051604","GO:0008150","GO:0010467"],"is_obsolete":false,"name":"positive regulation of protein maturation","synonyms":[{"name":"activation of protein maturation","type":"narrow"},{"name":"up regulation of protein maturation","type":"exact"},{"name":"up-regulation of protein maturation","type":"exact"},{"name":"upregulation of protein maturation","type":"exact"}],"termid":"GO:1903319"}


id: GO:0062195
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The organization process that preserves a microtubule bundle in a stable functional or structural state.","definition_xrefs":["PMID:18061564"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular component maintenance","termid":"GO:0043954"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"microtubule bundle maintenance","termid":"GO:0062195"}


id: PBO:0087748
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Subunit of the THO complex; THO is a nuclear complex comprised of Hpr1p, Mft1p, Rlr1p, and Thp2p, that is involved in transcription elongation and mitotic recombination; involved in telomere maintenance","termid":"PBO:0087748"}


id: PR:P79088
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein transport protein Sec61 subunit alpha isoform 1 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO02501","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protein transport protein sec61 subunit alpha (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC354.02c","secondary_identifiers":["UniProtKB:P79088"],"synonyms":[{"name":"Spom972h-SEC61A1","type":"exact"}],"termid":"PR:P79088"}


id: GO:0001604
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Combining with urotensin II to initiate a change in cell activity.","definition_xrefs":["PMID:15102493","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"G protein-coupled peptide receptor activity","termid":"GO:0008528"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0038023"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0038023"],"is_obsolete":false,"name":"urotensin II receptor activity","termid":"GO:0001604"}


id: PBO:0027603
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_mitotic_spindle_microtubule_depolymerization","termid":"PBO:0027603"}


id: PBO:0055199
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2624","termid":"PBO:0055199"}


id: GO:0150025
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Combining with an oxidised low-density lipoprotein particle and delivering the oxidised low-density lipoprotein particle into the cell via endocytosis.","definition_xrefs":["PMID:27607416","GOC:aruk","GOC:bc"],"direct_ancestors":[{"relation_name":"is_a","term_name":"lipoprotein particle receptor activity","termid":"GO:0030228"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0038024"}],"interesting_parent_ids":["GO:0003674","GO:0038024"],"is_obsolete":false,"name":"oxidised low-density lipoprotein particle receptor activity","synonyms":[{"name":"ox-LDL particle receptor activity","type":"exact"},{"name":"ox-LDL receptor activity","type":"related"},{"name":"oxLDL particle receptor activity","type":"exact"},{"name":"oxLDL receptor activity","type":"related"},{"name":"oxidised LDL particle receptor activity","type":"exact"},{"name":"oxidised LDL receptor activity","type":"related"},{"name":"oxidised low-density lipoprotein receptor activity","type":"related"},{"name":"oxidized LDL particle receptor activity","type":"exact"},{"name":"oxidized LDL receptor activity","type":"related"},{"name":"oxidized low-density lipoprotein particle receptor activity","type":"exact"},{"name":"oxidized low-density lipoprotein receptor activity","type":"related"}],"termid":"GO:0150025"}


id: PR:Q9US22
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- rpl1502 gene.","definition_xrefs":["UniProtKB:Q9US22","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"60S ribosomal protein L15-B (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC1783.08c","synonyms":[{"name":"Spom972h-rpl1502","type":"exact"}],"termid":"PR:Q9US22"}


id: PBO:0067536
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 680, pseudogene","termid":"PBO:0067536"}


id: PBO:0087156
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA helicase in the DEAH-box family; functions in both RNA polymerase I and polymerase II transcript metabolism; catalyzes removal of U2, U5, and U6 snRNPs from the postsplicing lariat-intron ribonucleoprotein complex; required for efficient biogenesis of both small- and large-subunit rRNAs; acts with Sqs1p to promote 20S to 18S rRNA processing catalyzed by endonuclease Nob1p","termid":"PBO:0087156"}


id: PBO:0090518
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DNA-directed RNA polymerase complex I TFIIS subunit Rpa12","termid":"PBO:0090518"}


id: PR:O14063
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- cut15 gene.","definition_xrefs":["PRO:DNx","UniProtKB:O14063"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"importin subunit alpha-1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC962.03c","synonyms":[{"name":"Spom972h-cut15","type":"exact"},{"name":"cell untimely torn protein 15 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"karyopherin subunit alpha-1 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"serine-rich RNA polymerase I suppressor protein (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:O14063"}


id: GO:1901276
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of tartrate.","definition_xrefs":["GOC:yaf","GOC:TermGenie","UniPathway:UPA00839"],"direct_ancestors":[{"relation_name":"is_a","term_name":"catabolic process","termid":"GO:0009056"},{"relation_name":"is_a","term_name":"tartrate metabolic process","termid":"GO:1901275"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"tartrate catabolic process","synonyms":[{"name":"tartrate breakdown","type":"exact"},{"name":"tartrate catabolism","type":"exact"},{"name":"tartrate degradation","type":"exact"}],"termid":"GO:1901276"}


id: PBO:0064441
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"proline rich nuclear receptor coactivator 2 pseudogene 1","termid":"PBO:0064441"}


id: SO:0000750
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"An origin_of_replication that is used for the amplification of a chromosomal nucleic acid sequence.","definition_xrefs":["SO:ma"],"direct_ancestors":[{"relation_name":"is_a","term_name":"origin_of_replication","termid":"SO:0000296"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"amplification_origin","synonyms":[{"name":"amplification origin","type":"exact"}],"termid":"SO:0000750"}


id: PBO:0071217
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L23a pseudogene 58","termid":"PBO:0071217"}


id: PBO:0075647
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SPRY4 intronic transcript 1","termid":"PBO:0075647"}


id: FYPO:0007859
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which the nucleus divides into two or more fragments, each enclosed by nuclear envelope and containing a DNA mass, in a cell that does not form a mitotic spindle or undergo cytokinesis. In these cells, the nucleus does not elongate into a dumbbell shape, but instead the nuclear envelope takes on a ruffled aspect and then eventually pinches into two nuclear masses.","definition_xrefs":["PomBase:jh","PomBase:mah","PMID:20967237"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal mitosis","termid":"FYPO:0000337"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000337"},{"rel_name":"is_a","termid":"FYPO:0000631"}],"interesting_parent_ids":["FYPO:0000337","FYPO:0005447","FYPO:0000631","FYPO:0000002","FYPO:0001320","FYPO:0001985"],"is_obsolete":false,"name":"nuclear division in absence of mitotic spindle","synonyms":[{"name":"nuclear division in absence of mitotic spindle during mitotic cell cycle","type":"related"},{"name":"nuclear division in absence of mitotic spindle during vegetative growth","type":"exact"},{"name":"nuclear fission","type":"exact"},{"name":"nuclear fission in absence of mitotic spindle","type":"exact"},{"name":"rel syn DNA segregation in absence of mitotic spindle","type":"related"}],"termid":"FYPO:0007859"}


id: PBO:0052244
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"KCTD13 divergent transcript","termid":"PBO:0052244"}


id: PBO:0030146
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_growth_on_caffeine","termid":"PBO:0030146"}


id: GO:2000566
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of CD8-positive, alpha-beta T cell proliferation.","definition_xrefs":["GOC:obol"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of alpha-beta T cell proliferation","termid":"GO:0046641"},{"relation_name":"is_a","term_name":"regulation of CD8-positive, alpha-beta T cell proliferation","termid":"GO:2000564"},{"relation_name":"is_a","term_name":"positive regulation of CD8-positive, alpha-beta T cell activation","termid":"GO:2001187"},{"relation_name":"positively_regulates","term_name":"CD8-positive, alpha-beta T cell proliferation","termid":"GO:0035740"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"positively_regulates","termid":"GO:0007155"},{"rel_name":"regulates","termid":"GO:0007155"}],"interesting_parent_ids":["GO:0007155","GO:0008150"],"is_obsolete":false,"name":"positive regulation of CD8-positive, alpha-beta T cell proliferation","termid":"GO:2000566"}


id: FYPO:0004737
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A physical cellular phenotype observed in the vegetative growth phase of the life cycle in which the amount of filamentous actin (F-actin) in the actomyosin contractile ring is lower than normal during early mitosis (before anaphase).","definition_xrefs":["PMID:25688133","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal actomyosin contractile ring","termid":"FYPO:0004736"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0000631"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0004803"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0000631","FYPO:0001985","FYPO:0004803","FYPO:0001320","FYPO:0005447"],"is_obsolete":false,"name":"decreased F-actin level in actomyosin contractile ring during early mitosis","synonyms":[{"name":"decreased F-actin level in actomyosin contractile ring during early mitosis during mitotic cell cycle","type":"related"},{"name":"decreased F-actin level in actomyosin contractile ring during early mitosis during vegetative growth","type":"exact"},{"name":"decreased F-actin level in mitotic contractile ring during early mitosis","type":"exact"},{"name":"decreased abundance of F-actin in the actomyosin contractile ring in early mitosis","type":"exact"},{"name":"decreased actomyosin contractile ring F-actin level during early mitosis","type":"exact"},{"name":"decreased filamentous actin level in actomyosin contractile ring during early mitosis","type":"exact"}],"termid":"FYPO:0004737"}


id: GO:0150129
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of interleukin-33 production.","definition_xrefs":["GOC:aruk"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of cytokine production","termid":"GO:0001819"},{"relation_name":"is_a","term_name":"regulation of interleukin-33 production","termid":"GO:0150127"},{"relation_name":"positively_regulates","term_name":"interleukin-33 production","termid":"GO:0072639"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0010467"},{"rel_name":"positively_regulates","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0010467","GO:0008150"],"is_obsolete":false,"name":"positive regulation of interleukin-33 production","secondary_identifiers":["GO:0150125","GO:0150132"],"synonyms":[{"name":"positive regulation of interleukin-33 biosynthetic process","type":"narrow"},{"name":"positive regulation of interleukin-33 secretion","type":"narrow"}],"termid":"GO:0150129"}


id: PBO:0058793
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 7162","termid":"PBO:0058793"}


id: PBO:0072200
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein S17 pseudogene 17","termid":"PBO:0072200"}


id: GO:0098015
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"Part of the virion that may be used to recognize, attach and inject the viral genome and accessory proteins into the host cell.","definition_xrefs":["GOC:bm","VZ:3958"],"direct_ancestors":[{"relation_name":"is_a","term_name":"virion component","termid":"GO:0044423"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"virus tail","synonyms":[{"name":"bacteriophage tail","type":"narrow"},{"name":"viral tail","type":"related"}],"termid":"GO:0098015"}


id: PBO:0062636
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 11 subfamily J member 5 pseudogene","termid":"PBO:0062636"}


id: PR:O14362
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- smi1 gene.","definition_xrefs":["UniProtKB:O14362","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cell wall biosynthesis/cell cycle regulator smi1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC30D10.17c","synonyms":[{"name":"Spom972h-smi1","type":"exact"}],"termid":"PR:O14362"}


id: GO:0018839
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: cis-4-(2-(3-hydroxy)-thionaphthenyl)-2-oxo-3-butenoate = trans-4-(2-(3-hydroxy)-thionaphthenyl)-2-oxo-3-butenoate.","definition_xrefs":["UM-BBD_reactionID:r0163"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cis-trans isomerase activity","termid":"GO:0016859"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016853"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003824","GO:0016853","GO:0003674"],"is_obsolete":false,"name":"cis-4-[2-(3-hydroxy)-thionaphthenyl]-2-oxo-3-butenoate isomerase activity","secondary_identifiers":["EC:5.2.1.-"],"termid":"GO:0018839"}


id: PR:O14029
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A microtubule-associated protein 1A that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO02252","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"COPII coat assembly protein sec16 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC29B12.07","secondary_identifiers":["UniProtKB:O14029"],"synonyms":[{"name":"Spom972h-MAP1A","type":"exact"},{"name":"protein transport protein sec16 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:O14029"}


id: PBO:0039910
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ARHGEF9 intronic transcript 1","termid":"PBO:0039910"}


id: PBO:0035704
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-sensitive_to_Zeocin","termid":"PBO:0035704"}


id: PBO:0071702
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L39 like","termid":"PBO:0071702"}


id: SO:0000424
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"The U3 segment of the long terminal repeats.","direct_ancestors":[{"relation_name":"is_a","term_name":"LTR_component","termid":"SO:0000848"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"U3_LTR_region","synonyms":[{"name":"U3 LTR region","type":"exact"},{"name":"U3 long terminal repeat region","type":"exact"}],"termid":"SO:0000424"}


id: GO:0030952
data:
  {"annotated_genes":["SJAG_00030","SJAG_02838","SJAG_02624","SJAG_00229","SJAG_02392","SJAG_00661","SJAG_01613","SJAG_00424","SJAG_00152","SJAG_03748","SJAG_04461","SJAG_03540"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[96559],"is_not":false,"summary":null,"term":"GO:0030952"},{"annotations":[94638,105885,91224,95463,72713,84022,84956,100565],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0030950"},{"annotations":[113604,94538,113101],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0030951"}]},"cv_name":"biological_process","definition":"Any cellular process that results in the specification, formation or maintenance of polarized cytoskeletal structures.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cytoskeleton organization","termid":"GO:0007010"},{"relation_name":"is_a","term_name":"establishment or maintenance of cell polarity","termid":"GO:0007163"}],"gene_count":12,"genes_by_uniquename":{"SJAG_00030":null,"SJAG_00152":null,"SJAG_00229":null,"SJAG_00424":null,"SJAG_00661":null,"SJAG_01613":null,"SJAG_02392":null,"SJAG_02624":null,"SJAG_02838":null,"SJAG_03540":null,"SJAG_03748":null,"SJAG_04461":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0007010"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0007163"}],"interesting_parent_ids":["GO:0007010","GO:0008150","GO:0007163"],"is_obsolete":false,"name":"establishment or maintenance of cytoskeleton polarity","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"synonyms":[{"name":"cytoskeleton polarization","type":"related"}],"termid":"GO:0030952","terms_by_termid":{"GO:0030950":null,"GO:0030951":null,"GO:0030952":null}}


id: GO:0098544
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process in which a protein complex is maintained in a location and prevented from moving elsewhere. These include sequestration, stabilization to prevent transport elsewhere and the active retrieval of protein complexes that move away.","definition_xrefs":["GOC:dos"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein-containing complex localization","termid":"GO:0031503"},{"relation_name":"is_a","term_name":"maintenance of location","termid":"GO:0051235"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0051179"}],"interesting_parent_ids":["GO:0008150","GO:0051179"],"is_obsolete":false,"name":"maintenance of protein complex location","termid":"GO:0098544"}


id: PBO:0062297
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 5 subfamily M member 8","termid":"PBO:0062297"}


id: PBO:0066420
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"REPIN1 antisense RNA 1","termid":"PBO:0066420"}


id: GO:0072227
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of the metanephric macula densa over time, from its formation to the mature structure. The metanephric macula densa is an area of specialized cells in the distal tubule of the metanephros that makes contact with the vascular pole of the glomerulus.","definition_xrefs":["GOC:mtg_kidney_jan10"],"direct_ancestors":[{"relation_name":"is_a","term_name":"macula densa development","termid":"GO:0072024"},{"relation_name":"is_a","term_name":"metanephric nephron epithelium development","termid":"GO:0072243"},{"relation_name":"part_of","term_name":"metanephric juxtaglomerular apparatus development","termid":"GO:0072206"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"metanephric macula densa development","termid":"GO:0072227"}


id: GO:0047566
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 4-nitrophenyl-3-ketovalidamine = 4-nitroaniline + 5-D-(5/6)-5-C-(hydroxymethyl)-2,6-dihydroxycyclohex-2-en-1-one + H+.","definition_xrefs":["EC:4.3.3.1","RHEA:22768"],"direct_ancestors":[{"relation_name":"is_a","term_name":"amine-lyase activity","termid":"GO:0016843"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016829"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016829"],"is_obsolete":false,"name":"3-ketovalidoxylamine C-N-lyase activity","secondary_identifiers":["KEGG_REACTION:R04367","MetaCyc:3-KETOVALIDOXYLAMINE-C-N-LYASE-RXN"],"synonyms":[{"name":"3-ketovalidoxylamine A C-N-lyase activity","type":"related"},{"name":"4-nitrophenyl-3-ketovalidamine 4-nitroaniline-lyase [5-D-(5/6)-5-C-(hydroxymethyl)-2,6-dihydroxycyclohex-2-en-1-one-forming]","type":"related"},{"name":"4-nitrophenyl-3-ketovalidamine 4-nitroaniline-lyase activity","type":"related"},{"name":"p-nitrophenyl-3-ketovalidamine p-nitroaniline lyase activity","type":"related"}],"termid":"GO:0047566"}


id: MOD:00862
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts a source amino acid residue to D-alanine.","definition_xrefs":["RESID:AA0191","PubMed:7961627","PubMed:7287302","ChEBI:29949"],"direct_ancestors":[{"relation_name":"is_a","term_name":"stereoisomerized residue","termid":"MOD:00664"},{"relation_name":"is_a","term_name":"modified residue that can arise from different natural residues","termid":"MOD:00859"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"D-alanine","synonyms":[{"name":"(R)-2-aminopropanoic acid","type":"exact"},{"name":"D-alanine","type":"exact"},{"name":"MOD_RES D-alanine (Ala)","type":"exact"},{"name":"MOD_RES D-alanine (Ser)","type":"exact"}],"termid":"MOD:00862"}


id: PBO:0082871
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Cortical ER protein; implicated in the membrane insertion of tail-anchored C-terminal single transmembrane domain proteins; may function in transport of glycosylphosphatidylinositol intermediates into the ER lumen; required for normal intracellular sterol distribution; human ARV1, required for normal cholesterol and bile acid homeostasis, can complement yeast arv1 null mutant; human variant causing early onset epileptic encephalopathy is unable to rescue the yeast null","termid":"PBO:0082871"}


id: PR:P36586
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- ypt5 gene.","definition_xrefs":["UniProtKB:P36586","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"},{"relation_name":"is_a","term_name":"GTP-binding protein ypt5 (Schizosaccharomyces pombe)","termid":"PR:000030005"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"GTP-binding protein ypt5 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC6F6.15","synonyms":[{"name":"SPAC6F6.15","type":"related"},{"name":"Spom972h-ypt5","type":"exact"}],"termid":"PR:P36586"}


id: GO:0045228
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of polysaccharides in the slime layer, a diffused layer of polysaccharide exterior to the bacterial cell wall.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"extracellular polysaccharide biosynthetic process","termid":"GO:0045226"},{"relation_name":"is_a","term_name":"slime layer organization","termid":"GO:0045231"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0005975"}],"interesting_parent_ids":["GO:0008150","GO:0005975"],"is_obsolete":false,"name":"slime layer polysaccharide biosynthetic process","synonyms":[{"name":"slime layer polysaccharide anabolism","type":"exact"},{"name":"slime layer polysaccharide biosynthesis","type":"exact"},{"name":"slime layer polysaccharide formation","type":"exact"},{"name":"slime layer polysaccharide synthesis","type":"exact"}],"termid":"GO:0045228"}


id: PBO:0043261
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"claudin 19","termid":"PBO:0043261"}


id: GO:0009018
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: sucrose + phosphate = D-fructose + alpha-D-glucose 1-phosphate.","definition_xrefs":["EC:2.4.1.7"],"direct_ancestors":[{"relation_name":"is_a","term_name":"1,4-alpha-oligoglucan phosphorylase activity","termid":"GO:0004645"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016757"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016757","GO:0016740","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"sucrose phosphorylase activity","secondary_identifiers":["MetaCyc:SUCROSE-PHOSPHORYLASE-RXN","RHEA:24048"],"synonyms":[{"name":"disaccharide glucosyltransferase activity","type":"broad"},{"name":"sucrose glucosyltransferase activity","type":"related"},{"name":"sucrose:phosphate alpha-D-glucosyltransferase activity","type":"related"}],"termid":"GO:0009018"}


id: GO:0055048
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The aggregation, arrangement and bonding together of a set of components to form the spindle, the array of microtubules and associated molecules that serves to move duplicated chromosomes apart, in the absence of centrosomes. Formation is initiated by the nucleation of microtubules (MTs) in the vicinity of condensed chromatin. MTs then attach to and congress around the chromatin due to activity of microtubule motors. A bipolar spindle is formed by focusing of the terminal ends of the MT array into spindle poles by molecular motors and cross-linking proteins.","definition_xrefs":["GOC:expert_rg","PMID:15034926","GOC:tb","GOC:mtg_sensu"],"direct_ancestors":[{"relation_name":"is_a","term_name":"spindle assembly","termid":"GO:0051225"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0007049"},{"rel_name":"is_a","termid":"GO:0000226"},{"rel_name":"is_a","termid":"GO:0007010"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0044085"}],"interesting_parent_ids":["GO:0007010","GO:0000226","GO:0008150","GO:0044085","GO:0007049"],"is_obsolete":false,"name":"anastral spindle assembly","termid":"GO:0055048"}


id: GO:0052156
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process in which an organism effects a change that affects the T-cell mediated immune response of the host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction.","definition_xrefs":["GOC:mtg_pamgo_17jul06"],"direct_ancestors":[{"relation_name":"is_a","term_name":"symbiont-mediated perturbation of host immune response","termid":"GO:0052553"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"perturbation of host T-cell mediated immune response","secondary_identifiers":["GO:0052295"],"synonyms":[{"name":"modulation by organism of T-cell mediated immune response of other organism involved in symbiotic interaction","type":"broad"},{"name":"modulation by symbiont of host T-cell mediated immune response","type":"exact"},{"name":"symbiont-mediated modulation of host cell-mediated immune response","type":"exact"},{"name":"symbiont-mediated perturbation of host cell-mediated immune response","type":"exact"}],"termid":"GO:0052156"}


id: GO:0140804
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: L-lysyl-[protein] + NAD+ = H+ + N(6)-(ADP-D-ribosyl)-L-lysyl-[protein] + nicotinamide.","definition_xrefs":["PMID:25043379","RHEA:58220"],"direct_ancestors":[{"relation_name":"is_a","term_name":"NAD+-protein ADP-ribosyltransferase activity","termid":"GO:1990404"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0140096"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016757"}],"interesting_parent_ids":["GO:0003824","GO:0016757","GO:0003674","GO:0140096","GO:0016740"],"is_obsolete":false,"name":"NAD+- protein-lysine ADP-ribosyltransferase activity","termid":"GO:0140804"}


id: FYPO:0005030
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which more ribonucleotides than normal are incorporated into the leading strand during mitotic DNA replication.","definition_xrefs":["PomBase:mah","PMID:25664722"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased ribonucleotide incorporation into DNA","termid":"FYPO:0007680"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0000293"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000631","FYPO:0000002","FYPO:0000293","FYPO:0005447","FYPO:0001320"],"is_obsolete":false,"name":"increased ribonucleotide incorporation on leading strand","synonyms":[{"name":"increased rNMP incorporation on leading strand","type":"related"},{"name":"increased rNTP incorporation on leading strand","type":"related"},{"name":"increased ribonucleotide residue incorporation on leading strand","type":"exact"}],"termid":"FYPO:0005030"}


id: GO:1905776
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of ATP-dependent DNA helicase activity.","definition_xrefs":["GOC:TermGenie","PMID:13679365","GOC:rb","PMID:19734539"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of helicase activity","termid":"GO:0051096"},{"relation_name":"is_a","term_name":"positive regulation of DNA duplex unwinding","termid":"GO:1905464"},{"relation_name":"is_a","term_name":"regulation of DNA helicase activity","termid":"GO:1905774"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of DNA helicase activity","secondary_identifiers":["GO:1902451"],"synonyms":[{"name":"activation of ATP-dependent DNA helicase activity","type":"narrow"},{"name":"activation of DNA helicase activity","type":"narrow"},{"name":"positive regulation of ATP-dependent DNA helicase activity","type":"exact"},{"name":"up regulation of ATP-dependent DNA helicase activity","type":"exact"},{"name":"up regulation of DNA helicase activity","type":"exact"},{"name":"up-regulation of ATP-dependent DNA helicase activity","type":"exact"},{"name":"up-regulation of DNA helicase activity","type":"exact"},{"name":"upregulation of ATP-dependent DNA helicase activity","type":"exact"},{"name":"upregulation of DNA helicase activity","type":"exact"}],"termid":"GO:1905776"}


id: PBO:0090486
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Vps20 associated protein Vta1","termid":"PBO:0090486"}


id: GO:0102338
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: behenoyl-CoA(4-) + malonyl-CoA(5-) + H+ = 3-oxotetracosanoyl-CoA. + carbon dioxide + coenzyme A.","definition_xrefs":["GOC:pz"],"gene_count":0,"genotype_count":0,"name":"obsolete 3-oxo-lignoceronyl-CoA synthase activity (obsolete GO:0102338)","termid":"GO:0102338"}


id: GO:0034216
data:
  {"annotated_genes":["SJAG_04673"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[95965],"is_not":false,"summary":null,"term":"GO:0034216"}]},"cv_name":"molecular_function","definition":"Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: thiamine(out) + H+(out) = thiamine(in) + H+(in). In high-affinity transport the transporter is able to bind the solute even if it is only present at very low concentrations.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"thiamine:proton symporter activity","termid":"GO:0034215"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04673":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0022857"}],"interesting_parent_ids":["GO:0003674","GO:0005215","GO:0022857"],"is_obsolete":false,"name":"high-affinity thiamine:proton symporter activity","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"high affinity thiamin:hydrogen symporter activity","type":"exact"},{"name":"high-affinity thiamin:hydrogen symporter activity","type":"exact"},{"name":"high-affinity thiamin:proton symporter activity","type":"exact"},{"name":"high-affinity thiamine:hydrogen symporter activity","type":"exact"}],"termid":"GO:0034216","terms_by_termid":{"GO:0034216":null}}


id: PATO:0000302
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0000302 relative speed value (obsolete PATO:0000302)","termid":"PATO:0000302"}


id: FYPO:0002385
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to heterochromatin is decreased.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal protein localization to heterochromatin during vegetative growth","termid":"FYPO:0001131"},{"relation_name":"is_a","term_name":"decreased protein localization to chromatin during vegetative growth","termid":"FYPO:0002909"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0001320","FYPO:0005447","FYPO:0000002","FYPO:0000138"],"is_obsolete":false,"name":"decreased protein localization to heterochromatin during vegetative growth","synonyms":[{"name":"decreased protein localisation to heterochromatin during vegetative growth","type":"exact"},{"name":"decreased protein localization to heterochromatin during mitotic cell cycle","type":"related"},{"name":"reduced protein localization to heterochromatin during vegetative growth","type":"exact"}],"termid":"FYPO:0002385"}


id: GO:0042193
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of methylmercury (MeHg+), a highly toxic organometal.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"methylmercury metabolic process","termid":"GO:0042191"},{"relation_name":"is_a","term_name":"organomercury catabolic process","termid":"GO:0046413"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044248"}],"interesting_parent_ids":["GO:0008150","GO:0044248"],"is_obsolete":false,"name":"methylmercury catabolic process","synonyms":[{"name":"methylmercury breakdown","type":"exact"},{"name":"methylmercury catabolism","type":"exact"},{"name":"methylmercury degradation","type":"exact"}],"termid":"GO:0042193"}


id: PBO:0091562
data:
  {"annotation_feature_type":"gene","cv_name":"name_description","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"FolliculiN-interacting Protein","termid":"PBO:0091562"}


id: PBO:0070413
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"replication protein A4","termid":"PBO:0070413"}


id: GO:1903615
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of protein tyrosine phosphatase activity.","definition_xrefs":["GOC:TermGenie","GO_REF:0000059","PMID:11129957"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of phosphoprotein phosphatase activity","termid":"GO:0032516"},{"relation_name":"is_a","term_name":"regulation of protein tyrosine phosphatase activity","termid":"GO:1903613"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of protein tyrosine phosphatase activity","synonyms":[{"name":"activation of PPT-phosphatase activity","type":"narrow"},{"name":"activation of PTP-phosphatase activity","type":"narrow"},{"name":"activation of PTPase activity","type":"narrow"},{"name":"activation of [phosphotyrosine]protein phosphatase activity","type":"narrow"},{"name":"activation of phosphoprotein phosphatase (phosphotyrosine) activity","type":"narrow"},{"name":"activation of phosphotyrosine histone phosphatase activity","type":"narrow"},{"name":"activation of phosphotyrosine phosphatase activity","type":"narrow"},{"name":"activation of phosphotyrosine protein phosphatase activity","type":"narrow"},{"name":"activation of phosphotyrosylprotein phosphatase activity","type":"narrow"},{"name":"activation of protein phosphotyrosine phosphatase activity","type":"narrow"},{"name":"activation of protein tyrosine phosphatase activity","type":"narrow"},{"name":"activation of protein-tyrosine-phosphatase activity","type":"narrow"},{"name":"activation of protein-tyrosine-phosphate phosphohydrolase activity","type":"narrow"},{"name":"activation of tyrosine O-phosphate phosphatase activity","type":"narrow"},{"name":"activation of tyrosylprotein phosphatase activity","type":"narrow"},{"name":"positive regulation of PPT-phosphatase activity","type":"exact"},{"name":"positive regulation of PTP-phosphatase activity","type":"exact"},{"name":"positive regulation of PTPase activity","type":"exact"},{"name":"positive regulation of [phosphotyrosine]protein phosphatase activity","type":"exact"},{"name":"positive regulation of phosphoprotein phosphatase (phosphotyrosine) activity","type":"exact"},{"name":"positive regulation of phosphotyrosine histone phosphatase activity","type":"exact"},{"name":"positive regulation of phosphotyrosine phosphatase activity","type":"exact"},{"name":"positive regulation of phosphotyrosine protein phosphatase activity","type":"exact"},{"name":"positive regulation of phosphotyrosylprotein phosphatase activity","type":"exact"},{"name":"positive regulation of protein phosphotyrosine phosphatase activity","type":"exact"},{"name":"positive regulation of protein-tyrosine-phosphatase activity","type":"exact"},{"name":"positive regulation of protein-tyrosine-phosphate phosphohydrolase activity","type":"exact"},{"name":"positive regulation of tyrosine O-phosphate phosphatase activity","type":"exact"},{"name":"positive regulation of tyrosylprotein phosphatase activity","type":"exact"},{"name":"up regulation of PPT-phosphatase activity","type":"exact"},{"name":"up regulation of PTP-phosphatase activity","type":"exact"},{"name":"up regulation of PTPase activity","type":"exact"},{"name":"up regulation of [phosphotyrosine]protein phosphatase activity","type":"exact"},{"name":"up regulation of phosphoprotein phosphatase (phosphotyrosine) activity","type":"exact"},{"name":"up regulation of phosphotyrosine histone phosphatase activity","type":"exact"},{"name":"up regulation of phosphotyrosine phosphatase activity","type":"exact"},{"name":"up regulation of phosphotyrosine protein phosphatase activity","type":"exact"},{"name":"up regulation of phosphotyrosylprotein phosphatase activity","type":"exact"},{"name":"up regulation of protein phosphotyrosine phosphatase activity","type":"exact"},{"name":"up regulation of protein tyrosine phosphatase activity","type":"exact"},{"name":"up regulation of protein-tyrosine-phosphatase activity","type":"exact"},{"name":"up regulation of protein-tyrosine-phosphate phosphohydrolase activity","type":"exact"},{"name":"up regulation of tyrosine O-phosphate phosphatase activity","type":"exact"},{"name":"up regulation of tyrosylprotein phosphatase activity","type":"exact"},{"name":"up-regulation of PPT-phosphatase activity","type":"exact"},{"name":"up-regulation of PTP-phosphatase activity","type":"exact"},{"name":"up-regulation of PTPase activity","type":"exact"},{"name":"up-regulation of [phosphotyrosine]protein phosphatase activity","type":"exact"},{"name":"up-regulation of phosphoprotein phosphatase (phosphotyrosine) activity","type":"exact"},{"name":"up-regulation of phosphotyrosine histone phosphatase activity","type":"exact"},{"name":"up-regulation of phosphotyrosine phosphatase activity","type":"exact"},{"name":"up-regulation of phosphotyrosine protein phosphatase activity","type":"exact"},{"name":"up-regulation of phosphotyrosylprotein phosphatase activity","type":"exact"},{"name":"up-regulation of protein phosphotyrosine phosphatase activity","type":"exact"},{"name":"up-regulation of protein tyrosine phosphatase activity","type":"exact"},{"name":"up-regulation of protein-tyrosine-phosphatase activity","type":"exact"},{"name":"up-regulation of protein-tyrosine-phosphate phosphohydrolase activity","type":"exact"},{"name":"up-regulation of tyrosine O-phosphate phosphatase activity","type":"exact"},{"name":"up-regulation of tyrosylprotein phosphatase activity","type":"exact"},{"name":"upregulation of PPT-phosphatase activity","type":"exact"},{"name":"upregulation of PTP-phosphatase activity","type":"exact"},{"name":"upregulation of PTPase activity","type":"exact"},{"name":"upregulation of [phosphotyrosine]protein phosphatase activity","type":"exact"},{"name":"upregulation of phosphoprotein phosphatase (phosphotyrosine) activity","type":"exact"},{"name":"upregulation of phosphotyrosine histone phosphatase activity","type":"exact"},{"name":"upregulation of phosphotyrosine phosphatase activity","type":"exact"},{"name":"upregulation of phosphotyrosine protein phosphatase activity","type":"exact"},{"name":"upregulation of phosphotyrosylprotein phosphatase activity","type":"exact"},{"name":"upregulation of protein phosphotyrosine phosphatase activity","type":"exact"},{"name":"upregulation of protein tyrosine phosphatase activity","type":"exact"},{"name":"upregulation of protein-tyrosine-phosphatase activity","type":"exact"},{"name":"upregulation of protein-tyrosine-phosphate phosphohydrolase activity","type":"exact"},{"name":"upregulation of tyrosine O-phosphate phosphatase activity","type":"exact"},{"name":"upregulation of tyrosylprotein phosphatase activity","type":"exact"}],"termid":"GO:1903615"}


id: PBO:0078069
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"T cell receptor alpha joining 59 (non-functional)","termid":"PBO:0078069"}


id: PBO:0074175
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"solute carrier family 37 member 2","termid":"PBO:0074175"}


id: GO:0016706
data:
  {"annotated_genes":["SJAG_03041","SJAG_02401","SJAG_00642","SJAG_03286","SJAG_04580","SJAG_03664","SJAG_00892","SJAG_03635","SJAG_03997","SJAG_00221","SJAG_01465","SJAG_05265"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[73878,76468],"is_not":false,"summary":null,"term":"GO:0016706"},{"annotations":[70303,82969],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0051864"},{"annotations":[112735],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0140680"},{"annotations":[70131,71556,74093],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0034647"},{"annotations":[98480,89491],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0140683"},{"annotations":[90195],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0106156"},{"annotations":[106824],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0031543"},{"annotations":[98352],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1990984"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: A + 2-oxoglutarate + O2 = B + succinate + CO2. This is an oxidation-reduction (redox) reaction in which hydrogen or electrons are transferred from 2-oxoglutarate and one other donor, and one atom of oxygen is incorporated into each donor.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen","termid":"GO:0016705"},{"relation_name":"is_a","term_name":"dioxygenase activity","termid":"GO:0051213"}],"gene_count":12,"genes_by_uniquename":{"SJAG_00221":null,"SJAG_00642":null,"SJAG_00892":null,"SJAG_01465":null,"SJAG_02401":null,"SJAG_03041":null,"SJAG_03286":null,"SJAG_03635":null,"SJAG_03664":null,"SJAG_03997":null,"SJAG_04580":null,"SJAG_05265":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016491","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"2-oxoglutarate-dependent dioxygenase activity","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"secondary_identifiers":["GO:0010302","EC:1.14.11.-","Reactome:R-HSA-1234164","Reactome:R-HSA-6783455"],"synonyms":[{"name":"2-oxoglutarate dioxygenase activity","type":"exact"},{"name":"oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors","type":"exact"}],"termid":"GO:0016706","terms_by_termid":{"GO:0016706":null,"GO:0031543":null,"GO:0034647":null,"GO:0051864":null,"GO:0106156":null,"GO:0140680":null,"GO:0140683":null,"GO:1990984":null}}


id: PBO:0001983
data:
  {"annotation_feature_type":"gene","cv_name":"EC numbers","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"3.2.1.14","termid":"PBO:0001983"}


id: PBO:0067308
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 394, pseudogene","termid":"PBO:0067308"}


id: PBO:0041713
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"calmodulin like 4","termid":"PBO:0041713"}


id: PBO:0072826
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"survival associated mitochondrial melanoma specific oncogenic non-coding RNA","termid":"PBO:0072826"}


id: GO:0010137
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of ureide, the organic form of nitrogen in nitrogen fixing and transporting plants, from IMP, which is synthesized de novo during nitrogen fixation by roots.","definition_xrefs":["GOC:pz"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ureide metabolic process","termid":"GO:0010135"},{"relation_name":"is_a","term_name":"amide biosynthetic process","termid":"GO:0043604"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"ureide biosynthetic process","secondary_identifiers":["MetaCyc:URSIN-PWY"],"synonyms":[{"name":"ureide anabolism","type":"exact"},{"name":"ureide biosynthesis","type":"exact"},{"name":"ureide formation","type":"exact"},{"name":"ureide synthesis","type":"exact"}],"termid":"GO:0010137"}


id: GO:0140280
data:
  {"annotated_genes":["SJAG_03048"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[97636],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1905757"}]},"cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of mitotic division septum formation. Division septum formation is the assembly and arrangement of a septum that spans the plasma membrane interface between progeny cells following cytokinesis.","definition_xrefs":["PMID:22786806"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of division septum assembly","termid":"GO:0010974"},{"relation_name":"is_a","term_name":"regulation of mitotic division septum assembly","termid":"GO:0140279"},{"relation_name":"is_a","term_name":"negative regulation of mitotic cytokinetic process","termid":"GO:1903437"},{"relation_name":"negatively_regulates","term_name":"mitotic division septum assembly","termid":"GO:0140278"}],"gene_count":1,"genes_by_uniquename":{"SJAG_03048":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"negatively_regulates","termid":"GO:0000281"},{"rel_name":"negatively_regulates","termid":"GO:0007049"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0000281"},{"rel_name":"regulates","termid":"GO:0044085"},{"rel_name":"regulates","termid":"GO:0007049"}],"interesting_parent_ids":["GO:0000281","GO:0007049","GO:0008150","GO:0044085"],"is_obsolete":false,"name":"negative regulation of mitotic division septum assembly","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"down regulation of division septum formation involved in mitotic cell cycle","type":"exact"},{"name":"down regulation of formation of division septum involved in mitotic cell cycle","type":"exact"},{"name":"down regulation of mitotic division septum assembly","type":"exact"},{"name":"down regulation of septin assembly and septum biosynthesis involved in mitotic cell cycle","type":"exact"},{"name":"down regulation of septin assembly and septum formation involved in mitotic cell cycle","type":"exact"},{"name":"down-regulation of division septum formation involved in mitotic cell cycle","type":"exact"},{"name":"down-regulation of formation of division septum involved in mitotic cell cycle","type":"exact"},{"name":"down-regulation of mitotic division septum assembly","type":"exact"},{"name":"down-regulation of septin assembly and septum biosynthesis involved in mitotic cell cycle","type":"exact"},{"name":"down-regulation of septin assembly and septum formation involved in mitotic cell cycle","type":"exact"},{"name":"downregulation of division septum formation involved in mitotic cell cycle","type":"exact"},{"name":"downregulation of formation of division septum involved in mitotic cell cycle","type":"exact"},{"name":"downregulation of mitotic division septum assembly","type":"exact"},{"name":"downregulation of septin assembly and septum biosynthesis involved in mitotic cell cycle","type":"exact"},{"name":"downregulation of septin assembly and septum formation involved in mitotic cell cycle","type":"exact"},{"name":"inhibition of division septum formation involved in mitotic cell cycle","type":"narrow"},{"name":"inhibition of formation of division septum involved in mitotic cell cycle","type":"narrow"},{"name":"inhibition of mitotic division septum assembly","type":"narrow"},{"name":"inhibition of septin assembly and septum biosynthesis involved in mitotic cell cycle","type":"exact"},{"name":"inhibition of septin assembly and septum formation involved in mitotic cell cycle","type":"exact"},{"name":"negative regulation of division septum formation involved in mitotic cell cycle","type":"exact"},{"name":"negative regulation of formation of division septum involved in mitotic cell cycle","type":"exact"},{"name":"negative regulation of septin assembly and septum biosynthesis involved in mitotic cell cycle","type":"exact"},{"name":"negative regulation of septin assembly and septum formation involved in mitotic cell cycle","type":"exact"}],"termid":"GO:0140280","terms_by_termid":{"GO:1905757":null}}


id: PBO:0043879
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cAMP responsive element binding protein like 2","termid":"PBO:0043879"}


id: GO:1903149
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Any adenine transmembrane transporter activity that is involved in adenine import into cell.","definition_xrefs":["GOC:dos","GOC:TermGenie","ISBN:0-8249-3695-6","GO_REF:0000061"],"gene_count":0,"genotype_count":0,"name":"obsolete adenine transmembrane transporter activity involved in adenine import into cell (obsolete GO:1903149)","synonyms":[{"name":"adenine transmembrane transporter activity involved in adenine import into cell","type":"exact"}],"termid":"GO:1903149"}


id: PBO:0063043
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"palladin, cytoskeletal associated protein","termid":"PBO:0063043"}


id: GO:0023027
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a major histocompatibility complex class I molecules via the antigen binding groove.","definition_xrefs":["GOC:mtg_signal","GOC:vw"],"direct_ancestors":[{"relation_name":"is_a","term_name":"MHC class I protein binding","termid":"GO:0042288"},{"relation_name":"part_of","term_name":"MHC class I protein complex binding","termid":"GO:0023024"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005515"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005488"}],"interesting_parent_ids":["GO:0005488","GO:0005515","GO:0003674"],"is_obsolete":false,"name":"MHC class I protein binding, via antigen binding groove","termid":"GO:0023027"}


id: PBO:0071086
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L21 pseudogene 88","termid":"PBO:0071086"}


id: FYPO:0009043
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"An increased chemical resistance phenotype observed in the vegetative growth phase of the life cycle in which cells grow in the presence of higher concentrations of potassium chloride and sodium dodecyl sulfate than normal.","definition_xrefs":["PomBase:mlr"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased resistance to chemical during vegetative growth","termid":"FYPO:0000126"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0002682"},{"rel_name":"is_a","termid":"FYPO:0000003"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000139"}],"interesting_parent_ids":["FYPO:0002682","FYPO:0000003","FYPO:0005447","FYPO:0000139","FYPO:0001985"],"is_obsolete":false,"name":"resistance to potassium chloride and sodium dodecyl sulfate","synonyms":[{"name":"resistance to potassium chloride and sodium dodecyl sulfate during mitotic cell cycle","type":"related"},{"name":"resistance to potassium chloride and sodium dodecyl sulfate during vegetative growth","type":"exact"},{"name":"resistance to potassium chloride and sodium dodecyl sulfate in combination","type":"exact"},{"name":"resistant to potassium chloride and sodium dodecyl sulfate","type":"exact"}],"termid":"FYPO:0009043"}


id: GO:0034206
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A protein-DNA complex formed by the association of a distinct set of general and specific transcription factors with a region of enhancer DNA. The cooperative assembly of an enhanceosome confers specificity of transcriptional regulation.","definition_xrefs":["PMID:17574024","PMID:11250145"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein-DNA complex","termid":"GO:0032993"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0005575","GO:0032991"],"is_obsolete":false,"name":"enhanceosome","secondary_identifiers":["Wikipedia:Enhanceosome"],"termid":"GO:0034206"}


id: GO:1990669
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The joining of the lipid bilayer membrane around an ERGIC-derived vesicle to the lipid bilayer membrane of the ER. Such vesicles include COPI-coated transport vesicles involved in retrograde transport.","definition_xrefs":["GOC:bhm","PMID:16038056","PMID:24119662"],"direct_ancestors":[{"relation_name":"is_a","term_name":"vesicle fusion with endoplasmic reticulum","termid":"GO:0048279"},{"relation_name":"part_of","term_name":"retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum","termid":"GO:0006890"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0061024"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0016192"}],"interesting_parent_ids":["GO:0061024","GO:0008150","GO:0016192","GO:0006810"],"is_obsolete":false,"name":"endoplasmic reticulum-Golgi intermediate compartment (ERGIC) derived vesicle fusion with endoplasmic reticulum membrane","synonyms":[{"name":"ER-Golgi intermediate compartment derived vesicle fusion with ER membrane","type":"exact"},{"name":"endoplasmic reticulum-Golgi intermediate compartment (ERGIC) derived vesicle fusion with ER membrane","type":"exact"}],"termid":"GO:1990669"}


id: PBO:0109019
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CATSPER2 pseudogene 2","termid":"PBO:0109019"}


id: GO:0072498
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process, occurring during the embryonic phase, whose specific outcome is the progression of the skeletal joints over time, from formation to mature structure.","definition_xrefs":["GOC:BHF","GOC:vk"],"direct_ancestors":[{"relation_name":"is_a","term_name":"embryonic skeletal system development","termid":"GO:0048706"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"embryonic skeletal joint development","termid":"GO:0072498"}


id: PBO:0079398
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TUBB4B pseudogene 5","termid":"PBO:0079398"}


id: GO:0099535
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The extracellular matrix of the perisynaptic space (the extracellular space adjacent to the synapse) and the synaptic cleft.","definition_xrefs":["GOC:dos"],"direct_ancestors":[{"relation_name":"is_a","term_name":"collagen-containing extracellular matrix","termid":"GO:0062023"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"synapse-associated extracellular matrix","synonyms":[{"name":"extra-synaptic extracellular matrix","type":"exact"}],"termid":"GO:0099535"}


id: GO:0031503
data:
  {"annotated_genes":["SJAG_01065","SJAG_02761","SJAG_02624","SJAG_02210","SJAG_02757","SJAG_03683","SJAG_01339","SJAG_03882","SJAG_04379","SJAG_03593","SJAG_01745","SJAG_03658","SJAG_03719","SJAG_04940","SJAG_01805","SJAG_00471","SJAG_01613","SJAG_01358","SJAG_04076","SJAG_01338","SJAG_04148","SJAG_03299","SJAG_02250","SJAG_03729","SJAG_01391","SJAG_01013","SJAG_01449","SJAG_02274","SJAG_02737","SJAG_03540","SJAG_04721","SJAG_03012","SJAG_04308","SJAG_02814","SJAG_05196","SJAG_00753","SJAG_00794","SJAG_00178"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[111946,98074,86800],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0072766"},{"annotations":[94540,95673,113605,90690,97698,89212,104303,110952,113102],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1990571"},{"annotations":[75511,94934,111259,75038,75855,100950,78371,112657],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0000055"},{"annotations":[70207,75039,69977,78372],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0000056"},{"annotations":[95705,91500,105557,99199,89401,106550,101362,84541,75405,87169,71280,90361,96679,77900,100594,76478],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0000054"}]},"cv_name":"biological_process","definition":"A localization process that acts on a protein complex; the complex is transported to, or maintained in, a specific location.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"localization","termid":"GO:0051179"}],"gene_count":38,"genes_by_uniquename":{"SJAG_00178":null,"SJAG_00471":null,"SJAG_00753":null,"SJAG_00794":null,"SJAG_01013":null,"SJAG_01065":null,"SJAG_01338":null,"SJAG_01339":null,"SJAG_01358":null,"SJAG_01391":null,"SJAG_01449":null,"SJAG_01613":null,"SJAG_01745":null,"SJAG_01805":null,"SJAG_02210":null,"SJAG_02250":null,"SJAG_02274":null,"SJAG_02624":null,"SJAG_02737":null,"SJAG_02757":null,"SJAG_02761":null,"SJAG_02814":null,"SJAG_03012":null,"SJAG_03299":null,"SJAG_03540":null,"SJAG_03593":null,"SJAG_03658":null,"SJAG_03683":null,"SJAG_03719":null,"SJAG_03729":null,"SJAG_03882":null,"SJAG_04076":null,"SJAG_04148":null,"SJAG_04308":null,"SJAG_04379":null,"SJAG_04721":null,"SJAG_04940":null,"SJAG_05196":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0051179"}],"interesting_parent_ids":["GO:0051179","GO:0008150"],"is_obsolete":false,"name":"protein-containing complex localization","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"secondary_identifiers":["GO:0034629"],"synonyms":[{"name":"cellular protein complex localisation","type":"related"},{"name":"cellular protein complex localization","type":"related"},{"name":"cellular protein-containing complex localization","type":"related"},{"name":"establishment and maintenance of cellular protein complex localization","type":"related"},{"name":"establishment and maintenance of protein complex localization","type":"exact"},{"name":"protein complex localisation","type":"exact"},{"name":"protein complex localization","type":"related"}],"termid":"GO:0031503","terms_by_termid":{"GO:0000054":null,"GO:0000055":null,"GO:0000056":null,"GO:0072766":null,"GO:1990571":null}}


id: PBO:0040603
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"B melanoma antigen","termid":"PBO:0040603"}


id: PBO:0027021
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abolished_glutathione_import_into_vacuole","termid":"PBO:0027021"}


id: GO:0052497
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The process in which an organism reduces the flow of fluid within the xylem, the tissue in plants that carries water and nutrients up from the roots to the shoot and leaves, of a second organism, where the two organisms are in a symbiotic interaction.","definition_xrefs":["GOC:mtg_pamgo_17jul06"],"gene_count":0,"genotype_count":0,"name":"obsolete occlusion by organism of xylem in other organism involved in symbiotic interaction (obsolete GO:0052497)","synonyms":[{"name":"occlusion by organism of xylem in other organism during symbiotic interaction","type":"related"}],"termid":"GO:0052497"}


id: GO:0030916
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process resulting in the transition of the otic placode into the otic vesicle, a transient embryonic structure formed during development of the vertebrate inner ear.","definition_xrefs":["GOC:dgh"],"direct_ancestors":[{"relation_name":"is_a","term_name":"epithelial tube formation","termid":"GO:0072175"},{"relation_name":"part_of","term_name":"otic vesicle morphogenesis","termid":"GO:0071600"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"otic vesicle formation","synonyms":[{"name":"otocyst biosynthesis","type":"exact"},{"name":"otocyst formation","type":"exact"}],"termid":"GO:0030916"}


id: PBO:0004633
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mannose-1-phosphate guanyltransferase (predicted)","termid":"PBO:0004633"}


id: GO:0060044
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of cardiac muscle cell proliferation.","definition_xrefs":["GOC:rph","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of cell population proliferation","termid":"GO:0008285"},{"relation_name":"is_a","term_name":"negative regulation of cardiac muscle tissue growth","termid":"GO:0055022"},{"relation_name":"is_a","term_name":"regulation of cardiac muscle cell proliferation","termid":"GO:0060043"},{"relation_name":"negatively_regulates","term_name":"cardiac muscle cell proliferation","termid":"GO:0060038"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of cardiac muscle cell proliferation","synonyms":[{"name":"negative regulation of heart muscle cell proliferation","type":"exact"}],"termid":"GO:0060044"}


id: GO:0042976
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process of introducing a phosphate group to a tyrosine residue of a JAK (Janus Activated Kinase) protein, thereby activating it.","definition_xrefs":["PMID:12479803","GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"peptidyl-tyrosine phosphorylation","termid":"GO:0018108"},{"relation_name":"is_a","term_name":"activation of protein kinase activity","termid":"GO:0032147"},{"relation_name":"part_of","term_name":"positive regulation of receptor signaling pathway via JAK-STAT","termid":"GO:0046427"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"activation of Janus kinase activity","secondary_identifiers":["GO:0042977","GO:0010531"],"synonyms":[{"name":"activation of JAK protein","type":"exact"},{"name":"activation of JAK protein by tyrosine phosphorylation","type":"exact"},{"name":"activation of JAK1 kinase activity","type":"narrow"},{"name":"activation of JAK1 protein","type":"narrow"},{"name":"activation of JAK2 kinase activity","type":"narrow"},{"name":"activation of JAK2 protein","type":"narrow"},{"name":"positive regulation of JAK protein activity by tyrosine phosphorylation","type":"exact"},{"name":"tyrosine phosphorylation of JAK protein","type":"exact"},{"name":"tyrosine phosphorylation of JAK1 protein","type":"narrow"},{"name":"tyrosine phosphorylation of JAK2 protein","type":"narrow"}],"termid":"GO:0042976"}


id: PBO:0052192
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"potassium calcium-activated channel subfamily M regulatory beta subunit 2","termid":"PBO:0052192"}


id: GO:0170035
data:
  {"annotated_genes":["SJAG_04145","SJAG_03861","SJAG_03641","SJAG_00714","SJAG_03163","SJAG_01019","SJAG_03290","SJAG_02235","SJAG_00937","SJAG_01903","SJAG_01271","SJAG_02450","SJAG_03293","SJAG_00830","SJAG_02309","SJAG_02901","SJAG_04634","SJAG_00674","SJAG_03434","SJAG_00881","SJAG_00495","SJAG_03398"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[77036],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0019544"},{"annotations":[70484],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0019547"},{"annotations":[77037,108290],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0010121"},{"annotations":[101193],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006530"},{"annotations":[70890],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006533"},{"annotations":[77970,113339],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006538"},{"annotations":[83977,83018,87157],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006540"},{"annotations":[96477],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006543"},{"annotations":[93205],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006546"},{"annotations":[76686,83003,73475,91769],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0019464"},{"annotations":[106342],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0042853"},{"annotations":[107175],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0033512"},{"annotations":[76258],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006565"},{"annotations":[88192],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006562"},{"annotations":[76804,70170],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0010133"},{"annotations":[71859,76259],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006567"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of an L-amino acid.","definition_xrefs":["GOC:edw"],"direct_ancestors":[{"relation_name":"is_a","term_name":"amino acid catabolic process","termid":"GO:0009063"},{"relation_name":"is_a","term_name":"L-amino acid metabolic process","termid":"GO:0170033"},{"relation_name":"is_a","term_name":"alpha-amino acid catabolic process","termid":"GO:1901606"}],"gene_count":22,"genes_by_uniquename":{"SJAG_00495":null,"SJAG_00674":null,"SJAG_00714":null,"SJAG_00830":null,"SJAG_00881":null,"SJAG_00937":null,"SJAG_01019":null,"SJAG_01271":null,"SJAG_01903":null,"SJAG_02235":null,"SJAG_02309":null,"SJAG_02450":null,"SJAG_02901":null,"SJAG_03163":null,"SJAG_03290":null,"SJAG_03293":null,"SJAG_03398":null,"SJAG_03434":null,"SJAG_03641":null,"SJAG_03861":null,"SJAG_04145":null,"SJAG_04634":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006520"},{"rel_name":"is_a","termid":"GO:0044248"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006520","GO:0044248","GO:0044281","GO:0008150"],"is_obsolete":false,"name":"L-amino acid catabolic process","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"synonyms":[{"name":"L-amino acid breakdown","type":"exact"},{"name":"L-amino acid catabolism","type":"exact"},{"name":"L-amino acid degradation","type":"exact"}],"termid":"GO:0170035","terms_by_termid":{"GO:0006530":null,"GO:0006533":null,"GO:0006538":null,"GO:0006540":null,"GO:0006543":null,"GO:0006546":null,"GO:0006562":null,"GO:0006565":null,"GO:0006567":null,"GO:0010121":null,"GO:0010133":null,"GO:0019464":null,"GO:0019544":null,"GO:0019547":null,"GO:0033512":null,"GO:0042853":null}}


id: GO:0021690
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A developmental process, independent of morphogenetic (shape) change, that is required for the cerebellar molecular layer to attain its fully functional state. The molecular layer is the outermost layer of the cerebellar cortex. It contains the parallel fibers of the granule cells, interneurons such as stellate and basket cells, and the dendrites of the underlying Purkinje cells.","definition_xrefs":["GOC:dph","GO_REF:0000021","GOC:jid","ISBN:0838580343","GOC:cls","GOC:dgh"],"direct_ancestors":[{"relation_name":"is_a","term_name":"anatomical structure maturation","termid":"GO:0071695"},{"relation_name":"part_of","term_name":"cerebellar molecular layer development","termid":"GO:0021679"},{"relation_name":"part_of","term_name":"cerebellar cortex maturation","termid":"GO:0021699"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cerebellar molecular layer maturation","termid":"GO:0021690"}


id: PBO:0052467
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"KLF transcription factor 13","termid":"PBO:0052467"}


id: FYPO:0003603
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which the first meiotic nuclear division is abnormal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal meiosis","termid":"FYPO:0000051"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001985","FYPO:0005447","FYPO:0000631"],"is_obsolete":false,"name":"abnormal meiosis I","synonyms":[{"name":"abnormal first meiotic nuclear division","type":"exact"}],"termid":"FYPO:0003603"}


id: PBO:0026808
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_protein_phosphorylation_during_cellular_response_to_micafungin","termid":"PBO:0026808"}


id: PBO:0067552
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 703, pseudogene","termid":"PBO:0067552"}


id: MOD:01179
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-alanine residue to N,N-dimethyl-L-alanine.","definition_xrefs":["PubMed:17691833","PubMed:387091","RESID:AA0433"],"direct_ancestors":[{"relation_name":"is_a","term_name":"N-methylated alanine","termid":"MOD:01461"},{"relation_name":"is_a","term_name":"alpha-amino dimethylated residue","termid":"MOD:01686"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:00427"}],"interesting_parent_ids":["MOD:00427"],"is_obsolete":false,"name":"N,N-dimethyl-L-alanine","synonyms":[{"name":"(S)-1-carboxy-N,N-dimethylaminoethane","type":"exact"},{"name":"(S)-2-(dimethylamino)propanoic acid","type":"exact"},{"name":"MOD_RES N,N-dimethylalanine","type":"exact"},{"name":"N,N-dimethyl-L-alanine","type":"exact"},{"name":"N,N-dimethylalanine","type":"exact"},{"name":"NMe2Ala","type":"exact"}],"termid":"MOD:01179"}


id: PBO:0060823
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nectin cell adhesion molecule 1","termid":"PBO:0060823"}


id: GO:0090358
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that increases the frequency, rate or extent of the chemical reactions and pathways involving tryptophan, the chiral amino acid 2-amino-3-(1H-indol-3-yl)propanoic acid.","definition_xrefs":["GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of cellular metabolic process","termid":"GO:0031325"},{"relation_name":"is_a","term_name":"positive regulation of amino acid metabolic process","termid":"GO:0045764"},{"relation_name":"is_a","term_name":"positive regulation of small molecule metabolic process","termid":"GO:0062013"},{"relation_name":"is_a","term_name":"regulation of tryptophan metabolic process","termid":"GO:0090357"},{"relation_name":"positively_regulates","term_name":"tryptophan metabolic process","termid":"GO:0006568"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0006520"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"positively_regulates","termid":"GO:0044281"},{"rel_name":"positively_regulates","termid":"GO:0006520"},{"rel_name":"regulates","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0044281","GO:0006520","GO:0008150"],"is_obsolete":false,"name":"positive regulation of tryptophan metabolic process","synonyms":[{"name":"positive regulation of tryptophan metabolism","type":"exact"}],"termid":"GO:0090358"}


id: PBO:0073270
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"septin 7 pseudogene 14","termid":"PBO:0073270"}


id: PBO:0001926
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nucleoporin Nup98 and Nup96","termid":"PBO:0001926"}


id: GO:1901044
data:
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id: GO:0030684
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id: GO:0065001
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id: GO:0044732
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id: PBO:0040741
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id: PBO:0068325
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id: GO:0032656
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id: PBO:0091413
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id: PR:Q9P7H4
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- ypa2 gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q9P7H4"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"serine/threonine-protein phosphatase 2A activator 2 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC1782.05","synonyms":[{"name":"PPIase PTPA-2 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-ypa2","type":"exact"},{"name":"peptidyl-prolyl cis-trans isomerase PTPA-2 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"phosphotyrosyl phosphatase activator 2 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"rotamase PTPA-2 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:Q9P7H4"}


id: PBO:0069458
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 723, pseudogene","termid":"PBO:0069458"}


id: PBO:0046613
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"endogenous retrovirus group MER34 member 1, envelope","termid":"PBO:0046613"}


id: SO:0000724
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A region of a DNA molecule where transfer is initiated during the process of conjugation or mobilization.","direct_ancestors":[{"relation_name":"is_a","term_name":"origin_of_replication","termid":"SO:0000296"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"oriT","secondary_identifiers":["http://en.wikipedia.org/wiki/Origin_of_transfer"],"synonyms":[{"name":"INSDC_feature:oriT","type":"exact"},{"name":"origin of transfer","type":"exact"}],"termid":"SO:0000724"}


id: GO:0048615
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which the anatomical structures of the anterior midgut (ectodermal) are generated and organized, during the embryonic phase.","definition_xrefs":["GOC:jid","GOC:rc"],"direct_ancestors":[{"relation_name":"is_a","term_name":"morphogenesis of embryonic epithelium","termid":"GO:0016331"},{"relation_name":"part_of","term_name":"anterior midgut (ectodermal) morphogenesis","termid":"GO:0007441"},{"relation_name":"part_of","term_name":"embryonic ectodermal digestive tract morphogenesis","termid":"GO:0048613"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"embryonic anterior midgut (ectodermal) morphogenesis","termid":"GO:0048615"}


id: PBO:0067995
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 5S ribosomal pseudogene 297","termid":"PBO:0067995"}


id: PBO:0071293
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L26 pseudogene 16","termid":"PBO:0071293"}


id: PBO:0070564
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L7a pseudogene 30","termid":"PBO:0070564"}


id: PBO:0048109
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"alpha-L-fucosidase 1 pseudogene 1","termid":"PBO:0048109"}


id: PBO:0029823
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-inviable_swollen_vegetative_cell","termid":"PBO:0029823"}


id: PBO:0069256
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 511, pseudogene","termid":"PBO:0069256"}


id: GO:0031919
data:
  {"annotated_genes":["SJAG_03808","SJAG_02962","SJAG_02152","SJAG_03652"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[85640,113687,112455,85641],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1903090"},{"annotations":[85643,113688,85642,112456],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1903091"},{"annotations":[85645,113689,85644,112457],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1903092"}]},"cv_name":"biological_process","definition":"The directed movement of any of the vitamin B6 compounds -- pyridoxal, pyridoxamine and pyridoxine and the active form, pyridoxal phosphate -- into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"vitamin transport","termid":"GO:0051180"},{"relation_name":"is_a","term_name":"organic substance transport","termid":"GO:0071702"},{"relation_name":"is_a","term_name":"nitrogen compound transport","termid":"GO:0071705"}],"gene_count":4,"genes_by_uniquename":{"SJAG_02152":null,"SJAG_02962":null,"SJAG_03652":null,"SJAG_03808":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0051179","GO:0008150","GO:0006810"],"is_obsolete":false,"name":"vitamin B6 transport","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0031919","terms_by_termid":{"GO:1903090":null,"GO:1903091":null,"GO:1903092":null}}


id: RO:0002488
data:
  {"annotation_feature_type":"gene","cv_name":"relationship","definition":"x existence starts during y if and only if the time point at which x starts is after or equivalent to the time point at which y starts and before or equivalent to the time point at which y ends. Formally: x existence starts during y iff α(x) >= α(y) & α(x) <= ω(y).","direct_ancestors":[{"relation_name":"is_a","term_name":"existence_overlaps","termid":"RO:0002490"},{"relation_name":"is_a","term_name":"existence_starts_during_or_after","termid":"RO:0002496"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"existence_starts_during","termid":"RO:0002488"}


id: PBO:0044782
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"2,4-dienoyl-CoA reductase 2","termid":"PBO:0044782"}


id: SO:0000073
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"An attribute to describe a gene when the five prime region overlaps with another gene's 3' region.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"overlapping","termid":"SO:0000068"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"five_prime_three_prime_overlap","synonyms":[{"name":"five prime-three prime overlap","type":"exact"}],"termid":"SO:0000073"}


id: PBO:0052189
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"KCNMA1 antisense RNA 2","termid":"PBO:0052189"}


id: PBO:0046450
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"epiplakin 1","termid":"PBO:0046450"}


id: GO:0039628
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The protein coat that surrounds the infective nucleic acid in some virus particles where the subunits (capsomeres) are arranged to form an icosahedron with T=169 symmetry. T=169 icosahedral capsid is composed of 12 pentameric and 1680 hexameric capsomeres for a total of 10140 capsid proteins.","definition_xrefs":["VZ:10117","GOC:plm"],"direct_ancestors":[{"relation_name":"is_a","term_name":"icosahedral viral capsid","termid":"GO:0019030"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"T=169 icosahedral viral capsid","synonyms":[{"name":"T=169 icosahedral capsid","type":"exact"}],"termid":"GO:0039628"}


id: GO:1900370
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of post-transcriptional gene silencing by RNA.","definition_xrefs":["GOC:TermGenie","GOC:kmv","PMID:22412382"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of post-transcriptional gene silencing","termid":"GO:0060148"},{"relation_name":"is_a","term_name":"regulation of post-transcriptional gene silencing by regulatory ncRNA","termid":"GO:1900368"},{"relation_name":"positively_regulates","term_name":"regulatory ncRNA-mediated post-transcriptional gene silencing","termid":"GO:0035194"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0008150","GO:0010467"],"is_obsolete":false,"name":"positive regulation of post-transcriptional gene silencing by RNA","synonyms":[{"name":"activation of RNA interference","type":"narrow"},{"name":"activation of RNAi","type":"exact"},{"name":"positive regulation of PTGS","type":"exact"},{"name":"positive regulation of RNA interference","type":"exact"},{"name":"positive regulation of RNAi","type":"exact"},{"name":"up regulation of RNA interference","type":"exact"},{"name":"up regulation of RNAi","type":"exact"},{"name":"up-regulation of RNA interference","type":"exact"},{"name":"up-regulation of RNAi","type":"exact"},{"name":"upregulation of RNA interference","type":"exact"},{"name":"upregulation of RNAi","type":"exact"}],"termid":"GO:1900370"}


id: FYPO:0001285
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of phosphatidylethanolamine measured in a cell is lower than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased phospholipid level","termid":"FYPO:0001289"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0001320","FYPO:0000002"],"is_obsolete":false,"name":"decreased cellular phosphatidylethanolamine level","synonyms":[{"name":"decreased cellular PE level","type":"exact"},{"name":"decreased cellular phosphatidylethanolamine level during mitotic cell cycle","type":"related"},{"name":"decreased cellular phosphatidylethanolamine level during vegetative growth","type":"exact"},{"name":"decreased phosphatidylethanolamine accumulation","type":"related"},{"name":"reduced cellular phosphatidylethanolamine level","type":"exact"}],"termid":"FYPO:0001285"}


id: PBO:0088050
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Ubiquitin ligase that modifies and regulates RNA Pol II; involved in a putative alcohol-responsive signaling pathway; accumulates in the nucleus under alcohol stress; has a role in organization of septins and the actin cytoskeleton; contains a Ring/PHD finger domain similar to the mammalian rA9 protein","termid":"PBO:0088050"}


id: PBO:0047434
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"FCF1 pseudogene 5","termid":"PBO:0047434"}


id: PBO:0000918
data:
  {"annotation_feature_type":"gene","cv_name":"EC numbers","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"2.5.1.10","termid":"PBO:0000918"}


id: PBO:0066114
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Ras interacting protein 1","termid":"PBO:0066114"}


id: GO:0039640
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The dissemination of mature viral particles from a host cell, caused by a virus stopping, preventing, or reducing peptidoglycan biosynthesis in the host organism. Peptidoglycans are any of a class of glycoconjugates found in bacterial cell walls.","definition_xrefs":["PMID:28894177","GOC:bm","GOC:bf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"viral release from host cell by cytolysis","termid":"GO:0044659"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"viral release via suppression of host peptidoglycan biosynthetic process","synonyms":[{"name":"cytolysis by virus via suppression of host peptidoglycan biosynthetic process","type":"related"},{"name":"viral exit by cytolysis via suppression of host peptidoglycan biosynthetic process","type":"exact"},{"name":"viral release by cytolysis via suppression of host peptidoglycan biosynthetic process","type":"exact"}],"termid":"GO:0039640"}


id: PBO:0047796
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"FOXG1 antisense RNA 1","termid":"PBO:0047796"}


id: PBO:0029672
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-angled_actomyosin_contractile_ring","termid":"PBO:0029672"}


id: FYPO:0005636
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype in which the localization of a protein from kinetochores to the spindle begins later than normal during the first meiotic nuclear division.","definition_xrefs":["PomBase:mah","PMID:21920317"],"direct_ancestors":[{"relation_name":"is_a","term_name":"delayed onset of protein localization to spindle during meiosis I","termid":"FYPO:0005635"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0005447","FYPO:0000002","FYPO:0000138"],"is_obsolete":false,"name":"delayed onset of protein localization from kinetochore to spindle during meiosis I","synonyms":[{"name":"delayed onset of protein localisation from kinetochore to spindle during meiosis I","type":"exact"},{"name":"delayed onset of protein localization from kinetochore to meiosis I spindle","type":"exact"},{"name":"delayed onset of protein localization from kinetochore to meiotic spindle during meiosis I","type":"exact"},{"name":"delayed onset of protein localization from kinetochore to spindle during first meiotic nuclear division","type":"exact"},{"name":"delayed onset of protein movement from kinetochore to spindle during meiosis I","type":"related"},{"name":"delayed protein localization from kinetochore to spindle during meiosis I","type":"exact"},{"name":"delayed protein localization to meiotic spindle from kinetochore during meiosis I","type":"exact"}],"termid":"FYPO:0005636"}


id: PBO:0062075
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 4 subfamily A member 6 pseudogene","termid":"PBO:0062075"}


id: MOD:00763
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"modification from Unimod N-linked glycosylation - missing ref","definition_xrefs":["Unimod:310"],"direct_ancestors":[{"relation_name":"is_a","term_name":"N4-glycosyl-L-asparagine","termid":"MOD:00160"},{"relation_name":"is_a","term_name":"complex glycosylation","termid":"MOD:00725"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:00693"}],"interesting_parent_ids":["MOD:00693"],"is_obsolete":false,"name":"biantennary (-1 galactose) N4-glycosylated asparagine","synonyms":[{"name":"Biantennary (-1 galactose)","type":"related"},{"name":"Hex(4)HexNAc(4)","type":"related"}],"termid":"MOD:00763"}


id: FYECO:0000066
data:
  {"annotation_feature_type":"gene","cv_name":"fission_yeast_phenotype_condition","definition":"Inositol was absent from the experiment.","definition_xrefs":["PomBase:al"],"gene_count":0,"genotype_count":0,"name":"OBSOLETE FYECO:0000066 absence of inositol (obsolete FYECO:0000066)","termid":"FYECO:0000066"}


id: GO:0043280
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the activity of a cysteine-type endopeptidase involved in the apoptotic process.","definition_xrefs":["GOC:jl","GOC:mtg_apoptosis"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of cysteine-type endopeptidase activity involved in apoptotic process","termid":"GO:0043281"},{"relation_name":"is_a","term_name":"positive regulation of cysteine-type endopeptidase activity","termid":"GO:2001056"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of cysteine-type endopeptidase activity involved in apoptotic process","synonyms":[{"name":"activation of caspase activity","type":"narrow"},{"name":"positive regulation of caspase activity","type":"broad"},{"name":"stimulation of caspase activity","type":"narrow"},{"name":"up regulation of caspase activity","type":"exact"},{"name":"up-regulation of caspase activity","type":"exact"},{"name":"upregulation of caspase activity","type":"exact"}],"termid":"GO:0043280"}


id: PBO:0038710
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"actin gamma 1 pseudogene 4","termid":"PBO:0038710"}


id: GO:0102331
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: malonyl-CoA + 3 H+ + a heptodecanoyl-[acp] = octadec-1-ene + 2 carbon dioxide + coenzyme A + a holo-[acyl-carrier protein].","definition_xrefs":["GOC:pz","EC:2.3.1.-"],"direct_ancestors":[{"relation_name":"is_a","term_name":"acyltransferase activity, transferring groups other than amino-acyl groups","termid":"GO:0016747"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016746"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016740"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016740","GO:0016746"],"is_obsolete":false,"name":"heptadecanoyl-[acp] elongase/decarboxylase activity","secondary_identifiers":["MetaCyc:RXN-13259"],"termid":"GO:0102331"}


id: PBO:0059867
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"myotubularin related protein 4","termid":"PBO:0059867"}


id: PR:Q9HDV4
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A lysine-specific demethylase 5A that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"lid2 complex component lid2 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBP19A11.06","secondary_identifiers":["UniProtKB:Q9HDV4"],"synonyms":[{"name":"Lid2C component lid2 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"SPBP19A11.06","type":"related"},{"name":"Spom972h-KDM5A","type":"exact"}],"termid":"PR:Q9HDV4"}


id: GO:0071618
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the transfer of acyl groups from an acyl-CoA to lysophosphatidylethanolamine.","definition_xrefs":["GOC:cjk"],"direct_ancestors":[{"relation_name":"is_a","term_name":"lysophospholipid acyltransferase activity","termid":"GO:0071617"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016746"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0016746","GO:0016740","GO:0003824"],"is_obsolete":false,"name":"lysophosphatidylethanolamine acyltransferase activity","termid":"GO:0071618"}


id: PBO:0078673
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-Lys (anticodon TTT) 6-1","termid":"PBO:0078673"}


id: PBO:0080301
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"vomeronasal 1 receptor 65 pseudogene","termid":"PBO:0080301"}


id: PBO:0068335
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ring finger protein 43","termid":"PBO:0068335"}


id: PBO:0056034
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"leukotriene B4 receptor","termid":"PBO:0056034"}


id: GO:0007285
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The phase of growth and gene expression that male germ cells undergo as they enter the spermatocyte stage. The cells grow in volume and transcribe most of the gene products needed for the morphological events that follow meiosis.","definition_xrefs":["GOC:jid","ISBN:0879694238"],"direct_ancestors":[{"relation_name":"is_a","term_name":"developmental process involved in reproduction","termid":"GO:0003006"},{"relation_name":"is_a","term_name":"cellular process involved in reproduction in multicellular organism","termid":"GO:0022412"},{"relation_name":"is_a","term_name":"developmental cell growth","termid":"GO:0048588"},{"relation_name":"part_of","term_name":"spermatogenesis","termid":"GO:0007283"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"primary spermatocyte growth","termid":"GO:0007285"}


id: PBO:0083406
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Dubious open reading frame; unlikely to encode a functional protein, based on available experimental and comparative sequence data; partially overlaps the dubious ORF YHR032W-A","termid":"PBO:0083406"}


id: PBO:0081303
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ZNF84 divergent transcript","termid":"PBO:0081303"}


id: PBO:0016992
data:
  {"annotation_feature_type":"gene","cv_name":"misc","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cell surface glycoprotein, flocculin, related to Gsf2","termid":"PBO:0016992"}


id: GO:0070139
data:
  {"annotated_genes":["SJAG_02214","SJAG_16454"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[73962,101335],"is_not":false,"summary":null,"term":"GO:0070139"}]},"cv_name":"molecular_function","definition":"Catalysis of the hydrolysis of peptide bonds between an alpha-carboxyl group and an alpha-amino group within the small conjugating protein SUMO.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ubiquitin-like protein-specific endopeptidase activity","termid":"GO:0070137"}],"gene_count":2,"genes_by_uniquename":{"SJAG_02214":null,"SJAG_16454":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0140096"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0008233"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016787","GO:0140096","GO:0008233","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"SUMO-specific endopeptidase activity","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"secondary_identifiers":["Reactome:R-HSA-2993763","Reactome:R-HSA-2990840","Reactome:R-HSA-2990842"],"termid":"GO:0070139","terms_by_termid":{"GO:0070139":null}}


id: FYPO:0007065
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of 20S rRNA precursor measured in a cell is too low to detect.","definition_xrefs":["PomBase:mah","PMID:29641590"],"direct_ancestors":[{"relation_name":"is_a","term_name":"RNA absent from cell during vegetative growth","termid":"FYPO:0003161"},{"relation_name":"is_a","term_name":"altered rRNA or precursor level","termid":"FYPO:0005996"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0006551"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001320","FYPO:0005447","FYPO:0006551","FYPO:0001985"],"is_obsolete":false,"name":"20S rRNA precursor absent from cell","synonyms":[{"name":"20S rRNA precursor absent from cell during mitotic cell cycle","type":"related"},{"name":"20S rRNA precursor absent from cell during vegetative growth","type":"exact"},{"name":"20S rRNA precursor transcripts absent from cell during vegetative growth","type":"exact"},{"name":"undetectable 20S rRNA precursor level during vegetative growth","type":"exact"}],"termid":"FYPO:0007065"}


id: PBO:0055724
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"lamin tail domain containing 1","termid":"PBO:0055724"}


id: GO:1900276
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of proteinase activated receptor activity.","definition_xrefs":["GOC:TermGenie","GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of signaling receptor activity","termid":"GO:0010469"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"regulation of proteinase activated receptor activity","termid":"GO:1900276"}


id: PBO:0070302
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNY1 pseudogene 8","termid":"PBO:0070302"}


id: PBO:0087453
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Subunit of a complex with Ctf8p; shares some subunits with Replication Factor C and is required for sister chromatid cohesion; may have overlapping functions with Rad24p in the DNA damage replication checkpoint","termid":"PBO:0087453"}


id: PBO:0051934
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"inter-alpha-trypsin inhibitor heavy chain 5","termid":"PBO:0051934"}


id: FYPO:0007883
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which cleavage-dependent termination of transcription by RNA polymerase II is abnormal. In cleavage-dependent termination, co-transcriptional secondary structure-dependent endonucleolytic cleavage triggers RNA polymerase II transcription termination; transcripts are not polyadenylated, and are subsequently rapidly degraded in the nucleus. Termination of all transcripts, or a subset of transcripts, may be affected.","definition_xrefs":["PomBase:mah","PMID:34352089"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased termination of RNA polymerase II transcription","termid":"FYPO:0006613"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000294"},{"rel_name":"is_a","termid":"FYPO:0006551"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0001320","FYPO:0001985","FYPO:0000294","FYPO:0000002","FYPO:0006551"],"is_obsolete":false,"name":"decreased cleavage-dependent termination of RNA polymerase II transcription","synonyms":[{"name":"decreased Pac1-dependent termination of RNA polymerase II transcription","type":"related"},{"name":"decreased cleavage-dependent RNA polymerase II transcription termination","type":"exact"},{"name":"decreased cleavage-dependent premature transcription termination","type":"narrow"},{"name":"decreased cleavage-dependent termination of RNA polymerase II transcription during mitotic cell cycle","type":"related"},{"name":"decreased cleavage-dependent termination of RNA polymerase II transcription during vegetative growth","type":"exact"}],"termid":"FYPO:0007883"}


id: FYPO:0004137
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which dimethylation of lysine at position 9 of histone H3 in heterochromatin at subtelomeric regions occurs to a lower extent than normal.","definition_xrefs":["PomBase:mah","PMID:25245948"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased histone H3-K9 dimethylation during vegetative growth","termid":"FYPO:0000876"},{"relation_name":"is_a","term_name":"decreased histone H3-K9 methylation at subtelomeric heterochromatin during vegetative growth","termid":"FYPO:0003572"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0002494"},{"rel_name":"is_a","termid":"FYPO:0002274"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0002494","FYPO:0001320","FYPO:0001985","FYPO:0002274","FYPO:0005447","FYPO:0000002"],"is_obsolete":false,"name":"decreased histone H3-K9 dimethylation at subtelomeric heterochromatin during vegetative growth","synonyms":[{"name":"decreased histone H3 K9 dimethylation at subtelomeric heterochromatin during vegetative growth","type":"exact"},{"name":"decreased histone H3-K9 dimethylation at subtelomeres during vegetative growth","type":"exact"},{"name":"decreased histone H3-K9 dimethylation at subtelomeric heterochromatin during mitotic cell cycle","type":"related"},{"name":"decreased histone H3-K9 dimethylation at telomeric heterochromatin during vegetative growth","type":"related"},{"name":"decreased histone H3K9me2 at subtelomeric heterochromatin during vegetative growth","type":"exact"},{"name":"decreased histone lysine H3 K9 dimethylation at subtelomeric heterochromatin during vegetative growth","type":"exact"},{"name":"reduced histone H3-K9 dimethylation at subtelomeric heterochromatin during vegetative growth","type":"exact"}],"termid":"FYPO:0004137"}


id: PBO:0039229
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"AKT serine/threonine kinase 3","termid":"PBO:0039229"}


id: PBO:0045515
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"D-aminoacyl-tRNA deacylase 1","termid":"PBO:0045515"}


id: PBO:0079472
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TWF2 divergent transcript","termid":"PBO:0079472"}


id: GO:0021743
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of the hypoglossal nucleus over time, from its formation to the mature structure.","definition_xrefs":["GOC:curators","GOC:cls","GO_REF:0000021","GOC:dph","GOC:jid","GOC:dgh"],"direct_ancestors":[{"relation_name":"is_a","term_name":"neural nucleus development","termid":"GO:0048857"},{"relation_name":"part_of","term_name":"medulla oblongata development","termid":"GO:0021550"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"hypoglossal nucleus development","termid":"GO:0021743"}


id: PBO:0110328
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ANKRD36 pseudogene 2","termid":"PBO:0110328"}


id: PBO:0051741
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"integrator complex subunit 8","termid":"PBO:0051741"}


id: MOD:01618
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-alaine residue and an L-asparagine residue to L-alanyl-L-isoaspartyl cyclopeptide.","definition_xrefs":["PubMed:3207697","RESID:AA0515","PubMed:19928958"],"direct_ancestors":[{"relation_name":"is_a","term_name":"isopeptide crosslinked residues","termid":"MOD:00688"},{"relation_name":"is_a","term_name":"crosslinked residues with loss of ammonia","termid":"MOD:00946"},{"relation_name":"is_a","term_name":"crosslinked L-alanine residue","termid":"MOD:02040"},{"relation_name":"is_a","term_name":"crosslinked L-asparagine residue","termid":"MOD:02042"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"L-alanyl-L-isoaspartyl cyclopeptide","synonyms":[{"name":"(2S,5S)-2-methyl-3,7-dioxo-1,4-diazepane-5-carboxylic acid","type":"exact"},{"name":"1,4.2-anhydro(L-alanyl-L-aspartic acid)","type":"exact"},{"name":"CROSSLNK Alanine isoaspartyl cyclopeptide (Ala-Asn)","type":"exact"},{"name":"L-alanyl-L-isoaspartyl cyclopeptide","type":"exact"}],"termid":"MOD:01618"}


id: PBO:0027960
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_cellular_nitrite_level","termid":"PBO:0027960"}


id: PBO:0051617
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"immunoglobulin like domain containing receptor 2","termid":"PBO:0051617"}


id: PBO:0027290
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_glutathione_peroxidase_activity","termid":"PBO:0027290"}


id: GO:0102751
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: UDP-alpha-D-glucose + a glucosyl-glycogenin = (1,4-alpha-D-glucosyl)n-glucosyl glucogenin + UDP + H+.","definition_xrefs":["GOC:pz","EC:2.4.1.186"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hexosyltransferase activity","termid":"GO:0016758"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016757"}],"interesting_parent_ids":["GO:0016740","GO:0003824","GO:0016757","GO:0003674"],"is_obsolete":false,"name":"UDP-alpha-D-glucose:glucosyl-glycogenin alpha-D-glucosyltransferase activity","secondary_identifiers":["RHEA:56560","MetaCyc:RXN-7667"],"termid":"GO:0102751"}


id: PBO:0002079
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"40S ribosomal protein S5 (predicted)","termid":"PBO:0002079"}


id: GO:0035288
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Partitioning the insect head anlage into procephalic (labral, (ocular), antennal and intercalary) segments. The procephalic segments lie anterior to the gnathal (posterior head) segments, and are pattered by different segmentation gene cascades to the abdominal, thoracic and posterior head (gnathal) segments.","definition_xrefs":["PMID:15382136"],"direct_ancestors":[{"relation_name":"is_a","term_name":"head segmentation","termid":"GO:0035287"},{"relation_name":"part_of","term_name":"anterior head development","termid":"GO:0097065"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"anterior head segmentation","synonyms":[{"name":"procephalic segmentation","type":"related"}],"termid":"GO:0035288"}


id: PBO:0060390
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitotic spindle organizing protein 1","termid":"PBO:0060390"}


id: PBO:0088722
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA demethylase","termid":"PBO:0088722"}


id: GO:0031665
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of signaling in response to detection of lipopolysaccharide.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of response to biotic stimulus","termid":"GO:0002832"},{"relation_name":"is_a","term_name":"negative regulation of signal transduction","termid":"GO:0009968"},{"relation_name":"is_a","term_name":"regulation of lipopolysaccharide-mediated signaling pathway","termid":"GO:0031664"},{"relation_name":"is_a","term_name":"negative regulation of response to external stimulus","termid":"GO:0032102"},{"relation_name":"negatively_regulates","term_name":"lipopolysaccharide-mediated signaling pathway","termid":"GO:0031663"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0023052"},{"rel_name":"negatively_regulates","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"negative regulation of lipopolysaccharide-mediated signaling pathway","synonyms":[{"name":"down regulation of lipopolysaccharide-mediated signaling pathway","type":"exact"},{"name":"down-regulation of lipopolysaccharide-mediated signaling pathway","type":"exact"},{"name":"downregulation of lipopolysaccharide-mediated signaling pathway","type":"exact"},{"name":"inhibition of lipopolysaccharide-mediated signaling pathway","type":"narrow"},{"name":"negative regulation of LPS-mediated signaling pathway","type":"exact"},{"name":"negative regulation of lipopolysaccharide-mediated signalling pathway","type":"exact"}],"termid":"GO:0031665"}


id: PR:000044738
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A DNA-directed RNA polymerase II subunit rpb1 (Schizosaccharomyces pombe) that has been post-translationally modified to include phosphoserine at position 2 of one or more C-terminal heptad repeats (YSPTSPS).","definition_xrefs":["PMID:28367989","PomBase:VW","PRO:DAN"],"direct_ancestors":[{"relation_name":"is_a","term_name":"DNA-directed RNA polymerase II subunit rpb1 (Schizosaccharomyces pombe)","termid":"PR:000044736"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"rpb1/Phos:(CTD:S2)","pombase_gene_id":"SPBC28F2.12","synonyms":[{"name":"S2P-Pol II (Schizosaccharomyces pombe)","type":"exact"},{"name":"Spom-rpb1/Phos:5","type":"exact"},{"name":"rpb1/Phos:(CTD:S2)","type":"exact"}],"termid":"PR:000044738"}


id: GO:0090362
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that increases the rate, frequency, or extent of the appearance of any platelet-derived growth factor due to biosynthesis or secretion following a cellular stimulus, resulting in an increase in its intracellular or extracellular levels.","definition_xrefs":["GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of cytokine production","termid":"GO:0001819"},{"relation_name":"is_a","term_name":"regulation of platelet-derived growth factor production","termid":"GO:0090361"},{"relation_name":"positively_regulates","term_name":"platelet-derived growth factor production","termid":"GO:0090360"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0010467"},{"rel_name":"positively_regulates","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0010467"],"is_obsolete":false,"name":"positive regulation of platelet-derived growth factor production","termid":"GO:0090362"}


id: FYPO:0002362
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which histone H3 acetylation occurs to a lower extent than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased histone acetylation during vegetative growth","termid":"FYPO:0000331"},{"relation_name":"is_a","term_name":"abnormal histone H3 acetylation during vegetative growth","termid":"FYPO:0002361"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0002494"},{"rel_name":"is_a","termid":"FYPO:0002274"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0002494","FYPO:0001320","FYPO:0001985","FYPO:0005447","FYPO:0002274","FYPO:0000002"],"is_obsolete":false,"name":"decreased histone H3 acetylation during vegetative growth","synonyms":[{"name":"decreased histone H3 acetylation during mitotic cell cycle","type":"related"},{"name":"reduced histone H3 acetylation during vegetative growth","type":"exact"}],"termid":"FYPO:0002362"}


id: PBO:0011506
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sequence orphan, similar to a region of alpha-galactosidase, melibiase, possible pseudogene","termid":"PBO:0011506"}


id: GO:0140146
data:
  {"annotated_genes":["SJAG_04698"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[110583],"is_not":false,"summary":null,"term":"GO:0140146"}]},"cv_name":"biological_process","definition":"The directed movement of calcium cations into the vacuole across the vacuolar membrane.","definition_xrefs":["GOC:vw","PMID:8628289"],"direct_ancestors":[{"relation_name":"is_a","term_name":"vacuolar transmembrane transport","termid":"GO:0034486"},{"relation_name":"is_a","term_name":"calcium ion transmembrane transport","termid":"GO:0070588"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04698":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0055085"},{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0055085","GO:0051179","GO:0008150","GO:0006810"],"is_obsolete":false,"name":"calcium ion import into vacuole","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0140146","terms_by_termid":{"GO:0140146":null}}


id: GO:0045013
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A transcription regulation process in which the presence of one carbon source leads to a decrease in the frequency, rate, or extent of transcription of specific genes involved in the metabolism of other carbon sources. Carbon catabolite repression is a mechanism of genetic regulation which the accumulation of catabolites of one substance in the cell represses the formation of enzymes that contribute to the catabolism of other substances.","definition_xrefs":["PMID:18359269","GOC:mah","ISBN:0198506732","PMID:11018147","PMID:9618445"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of DNA-templated transcription","termid":"GO:0045892"},{"relation_name":"is_a","term_name":"carbon catabolite regulation of transcription","termid":"GO:0045990"},{"relation_name":"is_a","term_name":"carbon catabolite repression","termid":"GO:0061985"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"negatively_regulates","termid":"GO:0006351"},{"rel_name":"is_a","termid":"GO:0006355"},{"rel_name":"regulates","termid":"GO:0010467"},{"rel_name":"regulates","termid":"GO:0006351"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0006351","GO:0006355","GO:0010467"],"is_obsolete":false,"name":"carbon catabolite repression of transcription","synonyms":[{"name":"carbon catabolite repression","type":"related"},{"name":"negative regulation of transcription by carbon catabolites","type":"exact"}],"termid":"GO:0045013"}


id: PBO:0091094
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitotic and meiotic spindle pole body protein, gamma tubulin complex linker-related Spo15","termid":"PBO:0091094"}


id: PBO:0026813
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_level_of_early_meiotic_gene_mRNA_during_meiotic_cell_cycle","termid":"PBO:0026813"}


id: PBO:0003288
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosome biogenesis protein Rrp14-C (predicted)","termid":"PBO:0003288"}


id: PBO:0073009
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sodium voltage-gated channel alpha subunit 9","termid":"PBO:0073009"}


id: PBO:0040139
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"achaete-scute family bHLH transcription factor 2","termid":"PBO:0040139"}


id: PBO:0071961
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein S6 kinase A2","termid":"PBO:0071961"}


id: PBO:0052626
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"keratin 5","termid":"PBO:0052626"}


id: GO:0031851
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a kappa-type opioid receptor.","definition_xrefs":["GOC:mah","GOC:nln"],"direct_ancestors":[{"relation_name":"is_a","term_name":"opioid receptor binding","termid":"GO:0031628"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005515"},{"rel_name":"is_a","termid":"GO:0005488"}],"interesting_parent_ids":["GO:0005515","GO:0005488","GO:0003674"],"is_obsolete":false,"name":"kappa-type opioid receptor binding","synonyms":[{"name":"dynorphin receptor binding","type":"related"},{"name":"kappa-type opioid receptor ligand","type":"narrow"}],"termid":"GO:0031851"}


id: GO:1904343
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of colon smooth muscle contraction.","definition_xrefs":["GO_REF:0000058","GOC:TermGenie","PMID:24170253"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of gastro-intestinal system smooth muscle contraction","termid":"GO:1904306"},{"relation_name":"is_a","term_name":"regulation of colon smooth muscle contraction","termid":"GO:1904341"},{"relation_name":"positively_regulates","term_name":"colon smooth muscle contraction","termid":"GO:1990765"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of colon smooth muscle contraction","synonyms":[{"name":"activation of colon smooth muscle contraction","type":"narrow"},{"name":"up regulation of colon smooth muscle contraction","type":"exact"},{"name":"up-regulation of colon smooth muscle contraction","type":"exact"},{"name":"upregulation of colon smooth muscle contraction","type":"exact"}],"termid":"GO:1904343"}


id: PBO:0060312
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MYLK antisense RNA 2","termid":"PBO:0060312"}


id: GO:0030632
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of D-alanine, the D-enantiomer of the amino acid alanine, i.e (2R)-2-aminopropanoic acid.","definition_xrefs":["GOC:jsg","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"alanine biosynthetic process","termid":"GO:0006523"},{"relation_name":"is_a","term_name":"D-alanine metabolic process","termid":"GO:0046436"},{"relation_name":"is_a","term_name":"D-amino acid biosynthetic process","termid":"GO:0046437"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0006520"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0044281","GO:0006520","GO:0008150"],"is_obsolete":false,"name":"D-alanine biosynthetic process","synonyms":[{"name":"D-alanine anabolism","type":"exact"},{"name":"D-alanine biosynthesis","type":"exact"},{"name":"D-alanine formation","type":"exact"},{"name":"D-alanine synthesis","type":"exact"}],"termid":"GO:0030632"}


id: FYPO:0000720
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which the observed rate of fatty acid synthase activity is abnormal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal catalytic activity","termid":"FYPO:0000661"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000661"},{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0000707"},{"rel_name":"is_a","termid":"FYPO:0000654"}],"interesting_parent_ids":["FYPO:0000654","FYPO:0000707","FYPO:0000652","FYPO:0001985","FYPO:0000661"],"is_obsolete":false,"name":"abnormal fatty acid synthase activity","synonyms":[{"name":"abnormal FAS activity","type":"exact"}],"termid":"FYPO:0000720"}


id: GO:0035207
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the rate or extent of hemocyte proliferation. Hemocytes are blood cells associated with a hemocoel (the cavity containing most of the major organs of the arthropod body) which are involved in defense and clotting of hemolymph, but not involved in transport of oxygen. An example of this is found in Drosophila melanogaster.","definition_xrefs":["GOC:bf","GOC:mtg_sensu"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of immune system process","termid":"GO:0002683"},{"relation_name":"is_a","term_name":"negative regulation of cell population proliferation","termid":"GO:0008285"},{"relation_name":"is_a","term_name":"regulation of hemocyte proliferation","termid":"GO:0035206"},{"relation_name":"negatively_regulates","term_name":"hemocyte proliferation","termid":"GO:0035172"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of hemocyte proliferation","synonyms":[{"name":"down regulation of hemocyte proliferation","type":"exact"},{"name":"down-regulation of hemocyte proliferation","type":"exact"},{"name":"downregulation of hemocyte proliferation","type":"exact"},{"name":"inhibition of hemocyte proliferation","type":"narrow"},{"name":"negative regulation of arthropod blood cell proliferation","type":"exact"}],"termid":"GO:0035207"}


id: PBO:0091700
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DNA ligase","termid":"PBO:0091700"}


id: PBO:0055334
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2762","termid":"PBO:0055334"}


id: _global:regulates_o_results_in_development_of
data:
  {"annotation_feature_type":"gene","cv_name":"go/extensions/gorel","definition":"This is the combination of the regulates relation with the results_in_development_of relation.","definition_xrefs":["GOC:mtg_berkeley_2013"],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"regulates_development_of","secondary_identifiers":["GOREL:0001023"],"synonyms":[{"name":"regulates_o_results_in_development_of","type":"exact"}],"termid":"_global:regulates_o_results_in_development_of"}


id: SO:1000110
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A mutation that reverts the sequence of a previous frameshift mutation back to the initial frame.","definition_xrefs":["SO:ke"],"gene_count":0,"genotype_count":0,"name":"OBSOLETE SO:1000110 frame_restoring_sequence_variant (obsolete SO:1000110)","synonyms":[{"name":"frame restoring mutation","type":"exact"},{"name":"frame restoring sequence variant","type":"exact"}],"termid":"SO:1000110"}


id: PBO:0004968
data:
  {"annotation_feature_type":"gene","cv_name":"EC numbers","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"5.1.3.2","termid":"PBO:0004968"}


id: PBO:0084142
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"High-affinity glucose transporter; member of the major facilitator superfamily, nearly identical to Hxt7p, expressed at high basal levels relative to other HXTs, repression of expression by high glucose requires SNF3; HXT6 has a paralog, HXT1, that arose from the whole genome duplication","termid":"PBO:0084142"}


id: GO:0046610
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The V0 domain of a proton-transporting V-type ATPase found in the lysosomal membrane.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"vacuolar proton-transporting V-type ATPase, V0 domain","termid":"GO:0000220"},{"relation_name":"part_of","term_name":"lysosomal proton-transporting V-type ATPase complex","termid":"GO:0046611"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"part_of","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0005773"}],"interesting_parent_ids":["GO:0032991","GO:0005737","GO:0005575","GO:0005773"],"is_obsolete":false,"name":"lysosomal proton-transporting V-type ATPase, V0 domain","synonyms":[{"name":"lysosomal hydrogen ion-transporting ATPase V0 domain","type":"exact"}],"termid":"GO:0046610"}


id: PBO:0088170
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"WW domain containing protein of unknown function; binds to Mca1p, a caspase-related protease that regulates H2O2-induced apoptosis; overexpression causes G1 phase growth arrest and clonal death that is suppressed by overexpression of MCA1","termid":"PBO:0088170"}


id: PBO:0042867
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CFAP97 domain containing 2","termid":"PBO:0042867"}


id: SO:0000172
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"Part of a conserved sequence located about 75-bp upstream of the start point of eukaryotic transcription units which may be involved in RNA polymerase binding; consensus=GG(C|T)CAATCT.","direct_ancestors":[{"relation_name":"is_a","term_name":"DNA_motif","termid":"SO:0000713"},{"relation_name":"part_of","term_name":"RNApol_II_promoter","termid":"SO:0000170"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CAAT_signal","secondary_identifiers":["http://en.wikipedia.org/wiki/CAAT_box"],"synonyms":[{"name":"CAAT box","type":"exact"},{"name":"CAAT signal","type":"exact"},{"name":"CAAT-box","type":"exact"},{"name":"INSDC_feature:regulatory","type":"broad"},{"name":"INSDC_qualifier:CAAT_signal","type":"exact"}],"termid":"SO:0000172"}


id: GO:0048883
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The migration of a cluster of a relatively undifferentiated cell originating at specific cephalic placodes and depositing proneuromasts along a developing lateral line, from which the neuromasts will develop.","definition_xrefs":["PMID:15832385","PMID:15018940"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell migration","termid":"GO:0016477"},{"relation_name":"part_of","term_name":"lateral line development","termid":"GO:0048882"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"neuromast primordium migration","synonyms":[{"name":"lateral line primordium migration","type":"exact"}],"termid":"GO:0048883"}


id: FYPO:0003434
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which the observed rate of ornithine carbamoyltransferase activity is decreased.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased catalytic activity","termid":"FYPO:0000663"},{"relation_name":"is_a","term_name":"abnormal ornithine carbamoyltransferase activity","termid":"FYPO:0003433"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000707"},{"rel_name":"is_a","termid":"FYPO:0000654"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000661"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001985","FYPO:0000661","FYPO:0000707","FYPO:0005447","FYPO:0000652","FYPO:0000654"],"is_obsolete":false,"name":"decreased ornithine carbamoyltransferase activity","synonyms":[{"name":"reduced ornithine carbamoyltransferase activity","type":"exact"}],"termid":"FYPO:0003434"}


id: PBO:0041207
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"basic leucine zipper and W2 domains 1","termid":"PBO:0041207"}


id: PBO:0083487
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Dubious open reading frame; unlikely to encode a functional protein, based on available experimental and comparative sequence data; partially overlaps the verified gene VPS64/YDR200C; computationally predicted to have thiol-disulfide oxidoreductase activity","termid":"PBO:0083487"}


id: PATO:0001858
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A functionality quality inhering in a bearer by virtue of being not completely paralysed.","definition_xrefs":["PATOC:GVG"],"direct_ancestors":[{"relation_name":"is_a","term_name":"movement behavioral quality","termid":"PATO:0002076"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"partially paralysed","termid":"PATO:0001858"}


id: PBO:0060758
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NADH:ubiquinone oxidoreductase subunit B4 pseudogene 2","termid":"PBO:0060758"}


id: PBO:0027820
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_positive_regulation_of_DNA-directed_DNA_polymerase_activity","termid":"PBO:0027820"}


id: GO:0061826
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The ring structure surrounding the podosome core, containing proteins such as vinculin and talin.","definition_xrefs":["PMID:23158496"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular anatomical entity","termid":"GO:0110165"},{"relation_name":"part_of","term_name":"podosome","termid":"GO:0002102"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0015629"}],"interesting_parent_ids":["GO:0015629","GO:0005575"],"is_obsolete":false,"name":"podosome ring","termid":"GO:0061826"}


id: PBO:0042521
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CDK2AP1 pseudogene 1","termid":"PBO:0042521"}


id: PBO:0066589
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ras homolog family member C","termid":"PBO:0066589"}


id: PBO:0031731
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_meiosis","termid":"PBO:0031731"}


id: PBO:0091079
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DNA-binding forkhead transcription factor, meiotic Mei4","termid":"PBO:0091079"}


id: PBO:0017827
data:
  {"annotation_feature_type":"gene","cv_name":"name_description","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Chromosome Segregation in Meiosis","termid":"PBO:0017827"}


id: PBO:0051937
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"intelectin 1","termid":"PBO:0051937"}


id: GO:0006048
data:
  {"annotated_genes":["SJAG_03723","SJAG_00978","SJAG_00519","SJAG_01443","SJAG_04728"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[57750,70650,71641,75519,98043],"is_not":false,"summary":null,"term":"GO:0006048"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of UDP-N-acetylglucosamine, a substance composed of N-acetylglucosamine, a common structural unit of oligosaccharides, in glycosidic linkage with uridine diphosphate.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"UDP-N-acetylglucosamine metabolic process","termid":"GO:0006047"},{"relation_name":"is_a","term_name":"nucleotide-sugar biosynthetic process","termid":"GO:0009226"},{"relation_name":"is_a","term_name":"amino sugar biosynthetic process","termid":"GO:0046349"}],"gene_count":5,"genes_by_uniquename":{"SJAG_00519":null,"SJAG_00978":null,"SJAG_01443":null,"SJAG_03723":null,"SJAG_04728":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0055086"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0044281","GO:0055086","GO:0008150"],"is_obsolete":false,"name":"UDP-N-acetylglucosamine biosynthetic process","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000041":null,"GO_REF:0000107":null},"secondary_identifiers":["MetaCyc:UDPNAGSYN-PWY"],"synonyms":[{"name":"UDP-GlcNAc biosynthesis","type":"exact"},{"name":"UDP-GlcNAc biosynthetic process","type":"exact"},{"name":"UDP-N-acetylglucosamine anabolism","type":"exact"},{"name":"UDP-N-acetylglucosamine biosynthesis","type":"exact"},{"name":"UDP-N-acetylglucosamine formation","type":"exact"},{"name":"UDP-N-acetylglucosamine synthesis","type":"exact"}],"termid":"GO:0006048","terms_by_termid":{"GO:0006048":null}}


id: PBO:0001020
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA Leucine","termid":"PBO:0001020"}


id: GO:0051053
data:
  {"annotated_genes":["SJAG_00573","SJAG_02724","SJAG_00247","SJAG_02162","SJAG_01068","SJAG_03048","SJAG_00266","SJAG_04671","SJAG_03097","SJAG_03997","SJAG_01210","SJAG_04855"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[97629],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:2001033"},{"annotations":[106865],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1904332"},{"annotations":[111859],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1903464"},{"annotations":[104055,93114,97633],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1903467"},{"annotations":[103153],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0045128"},{"annotations":[98478],"is_not":false,"rel_names":["regulates"],"summary":null,"term":"GO:1902681"},{"annotations":[76880,78593],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0043111"},{"annotations":[98479,94674],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0011000"},{"annotations":[97539,94675,110072],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0031582"},{"annotations":[94676],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0090001"},{"annotations":[97540],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0071807"}]},"cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways involving DNA.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of macromolecule metabolic process","termid":"GO:0010605"},{"relation_name":"is_a","term_name":"negative regulation of nucleobase-containing compound metabolic process","termid":"GO:0045934"},{"relation_name":"is_a","term_name":"regulation of DNA metabolic process","termid":"GO:0051052"},{"relation_name":"negatively_regulates","term_name":"DNA metabolic process","termid":"GO:0006259"}],"gene_count":12,"genes_by_uniquename":{"SJAG_00247":null,"SJAG_00266":null,"SJAG_00573":null,"SJAG_01068":null,"SJAG_01210":null,"SJAG_02162":null,"SJAG_02724":null,"SJAG_03048":null,"SJAG_03097":null,"SJAG_03997":null,"SJAG_04671":null,"SJAG_04855":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"negatively_regulates","termid":"GO:0006259"},{"rel_name":"regulates","termid":"GO:0006259"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006259","GO:0008150"],"is_obsolete":false,"name":"negative regulation of DNA metabolic process","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"synonyms":[{"name":"down regulation of DNA metabolic process","type":"exact"},{"name":"down-regulation of DNA metabolic process","type":"exact"},{"name":"downregulation of DNA metabolic process","type":"exact"},{"name":"inhibition of DNA metabolic process","type":"narrow"},{"name":"negative regulation of DNA metabolism","type":"exact"}],"termid":"GO:0051053","terms_by_termid":{"GO:0011000":null,"GO:0031582":null,"GO:0043111":null,"GO:0045128":null,"GO:0071807":null,"GO:0090001":null,"GO:1902681":null,"GO:1903464":null,"GO:1903467":null,"GO:1904332":null,"GO:2001033":null}}


id: GO:0097755
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that increases the diameter of blood vessels.","definition_xrefs":["GOC:pr"],"gene_count":0,"genotype_count":0,"name":"obsolete positive regulation of blood vessel diameter (obsolete GO:0097755)","synonyms":[{"name":"positive regulation of vasodilation","type":"related"}],"termid":"GO:0097755"}


id: GO:0071356
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a tumor necrosis factor stimulus.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to tumor necrosis factor","termid":"GO:0034612"},{"relation_name":"is_a","term_name":"cellular response to cytokine stimulus","termid":"GO:0071345"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cellular response to tumor necrosis factor","synonyms":[{"name":"cellular response to TNF","type":"exact"}],"termid":"GO:0071356"}


id: PBO:0086826
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Putative protein of unknown function; YNL165W is not an essential gene","termid":"PBO:0086826"}


id: GO:0102070
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 18-hydroxyoleate + a lipid hydroperoxide = 9,10-epoxy-18-hydroxystearate + a lipid alcohol.","definition_xrefs":["PMID:14535881","PMID:468835","GOC:pz","PMID:12226220"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on peroxide as acceptor","termid":"GO:0016684"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0016491","GO:0003824"],"is_obsolete":false,"name":"18-hydroxyoleate peroxygenase activity","secondary_identifiers":["EC:1.11.2.3","MetaCyc:RXN-1064"],"termid":"GO:0102070"}


id: PBO:0048431
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glucosylceramidase beta 2","termid":"PBO:0048431"}


id: GO:0031286
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of sorocarp stalk cell differentiation. An example of this process is found in Dictyostelium discoideum.","definition_xrefs":["PMID:4338436","GOC:mtg_sensu","GOC:kp"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of sorocarp stalk cell differentiation","termid":"GO:0031285"},{"relation_name":"is_a","term_name":"negative regulation of response to nutrient levels","termid":"GO:0032108"},{"relation_name":"is_a","term_name":"negative regulation of cell differentiation","termid":"GO:0045596"},{"relation_name":"is_a","term_name":"negative regulation of spore-bearing organ development","termid":"GO:0075262"},{"relation_name":"negatively_regulates","term_name":"sorocarp stalk cell differentiation","termid":"GO:0031149"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of sorocarp stalk cell differentiation","synonyms":[{"name":"down regulation of stalk cell differentiation","type":"exact"},{"name":"down-regulation of stalk cell differentiation","type":"exact"},{"name":"downregulation of stalk cell differentiation","type":"exact"},{"name":"inhibition of stalk cell differentiation","type":"narrow"},{"name":"negative regulation of stalk cell differentiation","type":"exact"}],"termid":"GO:0031286"}


id: FYPO:0007030
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A physical cellular phenotype observed in the vegetative growth phase of the life cycle in which the levels and proportions of monosaccharides in the cell wall are normal (i.e. indistinguishable from wild type).","definition_xrefs":["PMID:30389790","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal subcellular component during vegetative growth","termid":"FYPO:0001313"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0000002","FYPO:0000257"],"is_obsolete":false,"name":"normal cell wall monosaccharide composition during vegetative growth","synonyms":[{"name":"normal cell wall monosaccharide composition during mitotic cell cycle","type":"related"}],"termid":"FYPO:0007030"}


id: GO:1902031
data:
  {"annotated_genes":["SJAG_00685","SJAG_05314"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[85203],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1905857"},{"annotations":[75097],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0043456"}]},"cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of NADP metabolic process.","definition_xrefs":["GOC:TermGenie","PMID:23334421"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of purine nucleotide metabolic process","termid":"GO:1900542"},{"relation_name":"regulates","term_name":"NADP metabolic process","termid":"GO:0006739"}],"gene_count":2,"genes_by_uniquename":{"SJAG_00685":null,"SJAG_05314":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0055086"},{"rel_name":"regulates","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0008150","GO:0055086","GO:0044281"],"is_obsolete":false,"name":"regulation of NADP metabolic process","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"synonyms":[{"name":"regulation of NAD phosphorylation and dephosphorylation","type":"related"},{"name":"regulation of NADP (oxidized) metabolic process","type":"exact"},{"name":"regulation of NADP (oxidized) metabolism","type":"exact"},{"name":"regulation of NADP (reduced) metabolic process","type":"exact"},{"name":"regulation of NADP (reduced) metabolism","type":"exact"},{"name":"regulation of NADP metabolism","type":"exact"},{"name":"regulation of NADPH metabolic process","type":"exact"},{"name":"regulation of NADPH metabolism","type":"exact"},{"name":"regulation of nicotinamide adenine dinucleotide phosphate metabolic process","type":"exact"},{"name":"regulation of nicotinamide adenine dinucleotide phosphate metabolism","type":"exact"},{"name":"regulation of oxidized NADP metabolic process","type":"exact"},{"name":"regulation of oxidized NADP metabolism","type":"exact"},{"name":"regulation of oxidized nicotinamide adenine dinucleotide phosphate metabolic process","type":"exact"},{"name":"regulation of oxidized nicotinamide adenine dinucleotide phosphate metabolism","type":"exact"},{"name":"regulation of reduced NADP metabolic process","type":"exact"},{"name":"regulation of reduced NADP metabolism","type":"exact"},{"name":"regulation of reduced nicotinamide adenine dinucleotide phosphate metabolic process","type":"exact"},{"name":"regulation of reduced nicotinamide adenine dinucleotide phosphate metabolism","type":"exact"}],"termid":"GO:1902031","terms_by_termid":{"GO:0043456":null,"GO:1905857":null}}


id: GO:0001649
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whereby a relatively unspecialized cell acquires the specialized features of an osteoblast, a mesodermal or neural crest cell that gives rise to bone.","definition_xrefs":["GO_REF:0000034","CL:0000062","GOC:jid"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell differentiation","termid":"GO:0030154"},{"relation_name":"part_of","term_name":"ossification","termid":"GO:0001503"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"osteoblast differentiation","synonyms":[{"name":"osteoblast cell differentiation","type":"exact"}],"termid":"GO:0001649"}


id: PBO:0074765
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nucleolar RNA, C/D box 1C","termid":"PBO:0074765"}


id: GO:0097723
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process involved in the controlled movement of an amoeboid sperm cell.","definition_xrefs":["GOC:cilia","GOC:krc"],"direct_ancestors":[{"relation_name":"is_a","term_name":"sperm motility","termid":"GO:0097722"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"amoeboid sperm motility","synonyms":[{"name":"ameboid sperm motility","type":"exact"},{"name":"ameboid sperm movement","type":"exact"},{"name":"amoeboid sperm movement","type":"exact"}],"termid":"GO:0097723"}


id: PBO:0051549
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"interleukin 9","termid":"PBO:0051549"}


id: GO:0051623
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of the directed movement of norepinephrine into a cell.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of transport","termid":"GO:0051050"},{"relation_name":"is_a","term_name":"regulation of norepinephrine uptake","termid":"GO:0051621"},{"relation_name":"positively_regulates","term_name":"norepinephrine uptake","termid":"GO:0051620"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"positively_regulates","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006810","GO:0008150"],"is_obsolete":false,"name":"positive regulation of norepinephrine uptake","synonyms":[{"name":"activation of norepinephrine uptake","type":"narrow"},{"name":"positive regulation of levarterenol uptake","type":"exact"},{"name":"positive regulation of noradrenaline uptake","type":"exact"},{"name":"positive regulation of norepinephrine import","type":"exact"},{"name":"stimulation of norepinephrine uptake","type":"narrow"},{"name":"up regulation of norepinephrine uptake","type":"exact"},{"name":"up-regulation of norepinephrine uptake","type":"exact"},{"name":"upregulation of norepinephrine uptake","type":"exact"}],"termid":"GO:0051623"}


id: SO:0001280
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"2'-O-methylinosine is a modified inosine.","direct_ancestors":[{"relation_name":"is_a","term_name":"modified_inosine","termid":"SO:0001274"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"two_prime_O_methylinosine","secondary_identifiers":["RNAMOD:081"],"synonyms":[{"name":"2'-O-methylinosine","type":"exact"},{"name":"Im","type":"exact"},{"name":"two prime O methylinosine","type":"exact"}],"termid":"SO:0001280"}


id: PBO:0091281
data:
  {"annotation_feature_type":"gene","cv_name":"name_description","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"HydroxyUrea Sensitive","termid":"PBO:0091281"}


id: GO:0080115
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to the tail region of a myosin XI heavy chain.","definition_xrefs":["PMID:18703495"],"direct_ancestors":[{"relation_name":"is_a","term_name":"myosin tail binding","termid":"GO:0032029"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0005515"},{"rel_name":"is_a","termid":"GO:0008092"}],"interesting_parent_ids":["GO:0005515","GO:0008092","GO:0003674","GO:0005488"],"is_obsolete":false,"name":"myosin XI tail binding","termid":"GO:0080115"}


id: GO:1901583
data:
  {"annotated_genes":["SJAG_00922"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[103165],"is_not":false,"summary":null,"term":"GO:1901583"}]},"cv_name":"biological_process","definition":"The directed movement of a tetrapeptide from outside of a cell, across the plasma membrane and into the cytosol.","definition_xrefs":["PMID:22226946","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oligopeptide import across plasma membrane","termid":"GO:0140205"}],"gene_count":1,"genes_by_uniquename":{"SJAG_00922":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0055085"},{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0055085","GO:0051179","GO:0006810","GO:0008150"],"is_obsolete":false,"name":"tetrapeptide import across plasma membrane","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"tetrapeptide membrane transport","type":"exact"},{"name":"tetrapeptide transmembrane transport","type":"broad"}],"termid":"GO:1901583","terms_by_termid":{"GO:1901583":null}}


id: PBO:0083835
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Evolutionarily conserved 19S regulatory particle assembly-chaperone; involved in the assembly of the base subcomplex of the 19S proteasomal regulatory particle (RP); involved in DNA mismatch repair during slow growth; weak similarity to Msh1p; structural study suggests Hsm3p is a scaffold protein for Rpt1p-Rpt2p complex formation; ortholog of human 19S subunit S5b","termid":"PBO:0083835"}


id: GO:0098987
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that regulates the modification of synaptic structure and as a result regulates synaptic transmission.","definition_xrefs":["GOC:dos"],"direct_ancestors":[{"relation_name":"is_a","term_name":"modulation of chemical synaptic transmission","termid":"GO:0050804"},{"relation_name":"is_a","term_name":"regulation of modification of synaptic structure","termid":"GO:1905244"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"regulation of modification of synapse structure, modulating synaptic transmission","termid":"GO:0098987"}


id: PBO:0109394
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"testis expressed transcript, Y-linked 22","termid":"PBO:0109394"}


id: MOD:02062
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that contains an N-formyl-L-methionine residue crosslinked to one or more amino acid residues.","definition_xrefs":["PubMed:18688235"],"direct_ancestors":[{"relation_name":"is_a","term_name":"modified N-formyl-L-methionine residue","termid":"MOD:01450"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"crosslinked N-formyl-L-methionine residue","termid":"MOD:02062"}


id: GO:0052050
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. An interaction with the host organism mediated by a substance secreted by the other organism by a type IV secretion system. The host is defined as the larger of the organisms involved in a symbiotic interaction.","definition_xrefs":["GOC:mtg_pamgo_17jul06"],"gene_count":0,"genotype_count":0,"name":"obsolete interaction with host via substance secreted by type IV secretion system (obsolete GO:0052050)","termid":"GO:0052050"}


id: PBO:0083381
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Dubious open reading frame; unlikely to encode a functional protein, based on available experimental and comparative sequence data; partially overlaps CCT8/YJL008C, a verified gene encoding a subunit of the cytosolic chaperonin Cct ring complex","termid":"PBO:0083381"}


id: GO:0060057
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any apoptotic process that triggers the activity of proteolytic caspases whose actions dismantle the mammary epithelial cells resulting in their programmed cell death.","definition_xrefs":["GOC:dph","GOC:mtg_apoptosis"],"direct_ancestors":[{"relation_name":"is_a","term_name":"apoptotic process involved in morphogenesis","termid":"GO:0060561"},{"relation_name":"part_of","term_name":"mammary gland involution","termid":"GO:0060056"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"apoptotic process involved in mammary gland involution","synonyms":[{"name":"apoptosis involved in mammary gland involution","type":"narrow"}],"termid":"GO:0060057"}


id: PBO:0005448
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cell wall protein Pwp1","termid":"PBO:0005448"}


id: GO:0010241
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The three successive oxidations of the 4-methyl group of ent-kaurene to form ent-kaur-16-en-19-oate, kaurenoic acid. This process may be carried out entirely by the enzyme ent-kaurene oxidase.","definition_xrefs":["GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ent-kaurene metabolic process","termid":"GO:0033331"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006629"}],"interesting_parent_ids":["GO:0008150","GO:0006629"],"is_obsolete":false,"name":"ent-kaurene oxidation to kaurenoic acid","synonyms":[{"name":"ent-kaurene oxidation to ent-kaur-16-en-19-oate","type":"exact"},{"name":"ent-kaurene oxidation to ent-kaurenoate","type":"exact"},{"name":"ent-kaurene oxidation to kaurenoic acid by ent-kaurene oxidase","type":"exact"}],"termid":"GO:0010241"}


id: SOFP:element
data:
  {"annotation_feature_type":"gene","cv_name":"feature_property","definition":"name of transposable element class","direct_ancestors":[{"relation_name":"is_a","term_name":"feature_property","termid":"SOFP:feature_property"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"element","termid":"SOFP:element"}


id: FYPO:0004613
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the spindle pole body is not attached to any interphase cytoplasmic microtubules; as a result, the microtubules are not connected to the nucleus. Normally, the spindle pole body is attached to at least one cytoplasmic microtubule bundle.","definition_xrefs":["PMID:15772152","PomBase:mah","PomBase:vw"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal mitotic spindle pole body morphology","termid":"FYPO:0001474"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0001320","FYPO:0000002"],"is_obsolete":false,"name":"abolished microtubule attachment to spindle pole body","synonyms":[{"name":"SPB detached from cytoplasmic microtubules","type":"exact"},{"name":"abolished microtubule attachment to nucleus","type":"broad"},{"name":"abolished microtubule attachment to spindle pole body during mitotic cell cycle","type":"related"},{"name":"abolished microtubule attachment to spindle pole body during vegetative growth","type":"exact"},{"name":"cytoplasmic microtubules absent from mitotic spindle pole body","type":"exact"},{"name":"cytoplasmic microtubules detached from spindle pole body","type":"exact"},{"name":"interphase microtubules detached from nucleus","type":"exact"},{"name":"interphase microtubules detached from spindle pole body","type":"exact"},{"name":"spindle pole body detached from cytoplasmic microtubules","type":"exact"}],"termid":"FYPO:0004613"}


id: PBO:0064834
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protein phosphatase 1 regulatory inhibitor subunit 11","termid":"PBO:0064834"}


id: GO:0072497
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which a relatively unspecialized cell acquires specialized features of a mesenchymal stem cell. A mesenchymal stem cell is a cell that retains the ability to divide and proliferate throughout life to provide progenitor cells that can differentiate into specialized mesenchymal cells.","definition_xrefs":["CL:0002452","GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"stem cell differentiation","termid":"GO:0048863"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"mesenchymal stem cell differentiation","termid":"GO:0072497"}


id: PBO:0075392
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Sp5 transcription factor","termid":"PBO:0075392"}


id: PBO:0055169
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2593","termid":"PBO:0055169"}


id: PBO:0077529
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TMEM242 divergent transcript","termid":"PBO:0077529"}


id: GO:2001074
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of metanephric ureteric bud development.","definition_xrefs":["GOC:obol"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of metanephros development","termid":"GO:0072215"},{"relation_name":"regulates","term_name":"metanephric part of ureteric bud development","termid":"GO:0035502"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of metanephric ureteric bud development","termid":"GO:2001074"}


id: PBO:0003301
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"UDP-glucose-glycoprotein glucosyltransferase Gpt1","termid":"PBO:0003301"}


id: PBO:0060564
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nibrin","termid":"PBO:0060564"}


id: PBO:0070919
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L17 pseudogene 27","termid":"PBO:0070919"}


id: GO:0070956
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that decreases the frequency, rate or extent of the directed killing of a bacterium by a neutrophil.","definition_xrefs":["GOC:mah","GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of neutrophil mediated killing of bacterium","termid":"GO:0070950"},{"relation_name":"is_a","term_name":"negative regulation of neutrophil mediated killing of symbiont cell","termid":"GO:0070955"},{"relation_name":"negatively_regulates","term_name":"neutrophil-mediated killing of bacterium","termid":"GO:0070944"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of neutrophil mediated killing of bacterium","synonyms":[{"name":"down regulation of neutrophil mediated killing of bacterium","type":"exact"},{"name":"down-regulation of neutrophil mediated killing of bacterium","type":"exact"},{"name":"downregulation of neutrophil mediated killing of bacterium","type":"exact"},{"name":"inhibition of neutrophil mediated killing of bacterium","type":"narrow"}],"termid":"GO:0070956"}


id: GO:0036154
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Remodeling the acyl chains of diacylglycerol, through sequential deacylation and re-acylation reactions, to generate diacylglycerol containing different types of fatty acid acyl chains.","definition_xrefs":["GOC:mw","PMID:15364929"],"direct_ancestors":[{"relation_name":"is_a","term_name":"acylglycerol acyl-chain remodeling","termid":"GO:0036155"},{"relation_name":"is_a","term_name":"diacylglycerol metabolic process","termid":"GO:0046339"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006629"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0006629"],"is_obsolete":false,"name":"diacylglycerol acyl-chain remodeling","synonyms":[{"name":"diacylglycerol acyl-chain remodelling","type":"exact"},{"name":"diglyceride acyl-chain remodeling","type":"exact"}],"termid":"GO:0036154"}


id: GO:0070149
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process of coupling glutamate to glutamyl-tRNA in a mitochondrion, catalyzed by glutamyl-tRNA synthetase. In tRNA aminoacylation, the amino acid is first activated by linkage to AMP and then transferred to either the 2'- or the 3'-hydroxyl group of the 3'-adenosine residue of the tRNA.","definition_xrefs":["GOC:mcc","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"glutamyl-tRNA aminoacylation","termid":"GO:0006424"},{"relation_name":"is_a","term_name":"tRNA aminoacylation for mitochondrial protein translation","termid":"GO:0070127"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006520"},{"rel_name":"is_a","termid":"GO:0006399"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0140053"},{"rel_name":"part_of","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0140053","GO:0010467","GO:0008150","GO:0006520","GO:0006399"],"is_obsolete":false,"name":"mitochondrial glutamyl-tRNA aminoacylation","termid":"GO:0070149"}


id: PATO:0001555
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"The number of parts of a particular type that the bearer entity has. This is a relational quality, and thus holds between two entities: the bearer of the quality, and the type of parts.","definition_xrefs":["PATOC:CJM"],"direct_ancestors":[{"relation_name":"is_a","term_name":"physical object quality","termid":"PATO:0001241"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"has number of","secondary_identifiers":["OBO_REL:has_part"],"synonyms":[{"name":"cardinality","type":"related"},{"name":"extra or missing physical or functional parts","type":"exact"},{"name":"has or lacks parts of type","type":"exact"},{"name":"mereological quality","type":"exact"},{"name":"number","type":"related"},{"name":"number of","type":"exact"}],"termid":"PATO:0001555"}


id: PBO:0041203
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"blood vessel epicardial substance","termid":"PBO:0041203"}


id: GO:0033269
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"An axon part that is located between the nodes of Ranvier and surrounded by compact myelin sheath.","definition_xrefs":["GOC:mh","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular anatomical entity","termid":"GO:0110165"},{"relation_name":"part_of","term_name":"main axon","termid":"GO:0044304"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"internode region of axon","secondary_identifiers":["NIF_Subcellular:sao206157942"],"synonyms":[{"name":"internode","type":"exact"}],"termid":"GO:0033269"}


id: PBO:0016964
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial iron-sulfur cluster biogenesis protein Iba57 (predicted)","termid":"PBO:0016964"}


id: FYPO:0003355
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"Auxotrophy in which a cell is unable to synthesize sulfur-containing amino acids, and therefore requires one or more sulfur-containing amino acids (e.g. cysteine or methionine) in the medium for vegetative cell growth.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"auxotrophy","termid":"FYPO:0000128"},{"relation_name":"is_a","term_name":"abnormal cellular physical quality phenotype","termid":"FYPO:0004638"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000002"],"is_obsolete":false,"name":"growth auxotrophic for sulfur-containing amino acid","synonyms":[{"name":"growth auxotrophic for sulfur-containing amino acid during mitotic cell cycle","type":"related"},{"name":"growth auxotrophic for sulfur-containing amino acid during vegetative growth","type":"exact"},{"name":"growth auxotrophic for sulphur-containing amino acid","type":"exact"},{"name":"sulfur-containing amino acid auxotrophy","type":"exact"}],"termid":"FYPO:0003355"}


id: PBO:0091670
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dipeptide transmembrane transporter Dal5h2","termid":"PBO:0091670"}


id: PBO:0069101
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 348, pseudogene","termid":"PBO:0069101"}


id: SO:0002149
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A kind of histone modification site, whereby the 15th residue (a lysine), from the start of the H2AZ histone protein is acetylated.","definition_xrefs":["PMID:19385636","PMID:24316985","PMID:27087541"],"direct_ancestors":[{"relation_name":"is_a","term_name":"histone_2AZ_acetylation_site","termid":"SO:0002144"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"SO:0000839"}],"interesting_parent_ids":["SO:0000839"],"is_obsolete":false,"name":"H2AZK15_acetylation_site","synonyms":[{"name":"H2A.ZK15ac","type":"exact"},{"name":"H2AZK15 acetylation site","type":"exact"},{"name":"H2AZK15ac","type":"exact"}],"termid":"SO:0002149"}


id: PBO:0066490
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ret finger protein like 4A pseudogene 1","termid":"PBO:0066490"}


id: FYPO:0005427
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell morphology phenotype in which a vegetatively growing cell is elongated, is curved along the long axis to form a \\\"J\\\" shape, and contains cytoplasmic microtubules that curve to follow the long axis of the cell. In a curved cell, the long axis follows a smooth bend rather than a straight line. In a J-shaped cell, the curve is centered away from the midpoint of the long axis of the cell.","definition_xrefs":["PomBase:mah","PomBase:vw","PMID:11739790"],"direct_ancestors":[{"relation_name":"has_part","term_name":"curved interphase microtubules","termid":"FYPO:0003327"},{"relation_name":"has_part","term_name":"J-shaped vegetative cell","termid":"FYPO:0005790"},{"relation_name":"is_a","term_name":"curved interphase microtubules","termid":"FYPO:0003327"},{"relation_name":"is_a","term_name":"curved elongated vegetative cell with long curved interphase microtubules","termid":"FYPO:0005425"},{"relation_name":"is_a","term_name":"J-shaped vegetative cell","termid":"FYPO:0005790"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"has_part","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0000054"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"output_of","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000005"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"has_part","termid":"FYPO:0002399"},{"rel_name":"has_part","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0002399"},{"rel_name":"has_part","termid":"FYPO:0000005"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0000054","FYPO:0005447","FYPO:0000005","FYPO:0002399","FYPO:0000002","FYPO:0001985"],"is_obsolete":false,"name":"elongated J-shaped vegetative cell with curved interphase microtubules","synonyms":[{"name":"curved elongated J-shaped vegetative cell with curved cytoplasmic microtubules","type":"exact"},{"name":"elongated J-shaped cell with curved cytoplasmic microtubules","type":"exact"},{"name":"elongated J-shaped cell with curved interphase microtubules during vegetative growth","type":"exact"},{"name":"elongated J-shaped vegetative cell with curved cytoplasmic microtubules during mitotic interphase","type":"exact"},{"name":"elongated J-shaped vegetative cell with curved interphase cytoplasmic microtubules","type":"exact"},{"name":"elongated J-shaped vegetative cell with curved interphase microtubules during mitotic cell cycle","type":"related"}],"termid":"FYPO:0005427"}


id: PBO:0053991
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1310","termid":"PBO:0053991"}


id: PR:P87114
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- fft1 gene.","definition_xrefs":["PRO:DNx","UniProtKB:P87114"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ATP-dependent helicase fft1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC20G8.08c","synonyms":[{"name":"Fun thirty-related protein 1 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-fft1","type":"exact"}],"termid":"PR:P87114"}


id: PBO:0057563
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 758","termid":"PBO:0057563"}


id: PBO:0074035
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"solute carrier family 25 member 21","termid":"PBO:0074035"}


id: GO:0000041
data:
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