# terms

id: PR:Q9Y7S8
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- dbl1 gene.","definition_xrefs":["UniProtKB:Q9Y7S8","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized protein C2H8.05c (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC2H8.05c","synonyms":[{"name":"Spom972h-dbl1","type":"exact"}],"termid":"PR:Q9Y7S8"}


id: GO:0006633
data:
  {"annotated_genes":["SJAG_04107","SJAG_00630","SJAG_03313","SJAG_04972","SJAG_02717","SJAG_03180","SJAG_03526","SJAG_03198","SJAG_03943","SJAG_03972","SJAG_01458","SJAG_00099","SJAG_00305","SJAG_02769","SJAG_02007","SJAG_01238","SJAG_00432","SJAG_03553","SJAG_03130","SJAG_03731","SJAG_01356","SJAG_02885","SJAG_01300","SJAG_01946"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[83588,86974,90670,93025,93398,93990,94082,94107,96508,97844,108498],"is_not":false,"summary":null,"term":"GO:0006633"},{"annotations":[96611],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0046360"},{"annotations":[93924,101756,107285],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0030497"},{"annotations":[87484,85003],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0034625"},{"annotations":[85004,87485],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0019367"},{"annotations":[92870,108684],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0009107"},{"annotations":[100166,93399,96509],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0042759"},{"annotations":[107226],"is_not":false,"rel_names":["negatively_regulates","regulates"],"summary":null,"term":"GO:0045717"},{"annotations":[93401],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1900535"},{"annotations":[69970,110460],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006636"},{"annotations":[85006,107286,101758,87488,99300],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0042761"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of a fatty acid, any of the aliphatic monocarboxylic acids that can be liberated by hydrolysis from naturally occurring fats and oils. Fatty acids are predominantly straight-chain acids of 4 to 24 carbon atoms, which may be saturated or unsaturated; branched fatty acids and hydroxy fatty acids also occur, and very long chain acids of over 30 carbons are found in waxes.","definition_xrefs":["GOC:mah","ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"fatty acid metabolic process","termid":"GO:0006631"},{"relation_name":"is_a","term_name":"lipid biosynthetic process","termid":"GO:0008610"},{"relation_name":"is_a","term_name":"monocarboxylic acid biosynthetic process","termid":"GO:0072330"}],"gene_count":24,"genes_by_uniquename":{"SJAG_00099":null,"SJAG_00305":null,"SJAG_00432":null,"SJAG_00630":null,"SJAG_01238":null,"SJAG_01300":null,"SJAG_01356":null,"SJAG_01458":null,"SJAG_01946":null,"SJAG_02007":null,"SJAG_02717":null,"SJAG_02769":null,"SJAG_02885":null,"SJAG_03130":null,"SJAG_03180":null,"SJAG_03198":null,"SJAG_03313":null,"SJAG_03526":null,"SJAG_03553":null,"SJAG_03731":null,"SJAG_03943":null,"SJAG_03972":null,"SJAG_04107":null,"SJAG_04972":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006629"}],"interesting_parent_ids":["GO:0008150","GO:0044281","GO:0006629"],"is_obsolete":false,"name":"fatty acid biosynthetic process","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"secondary_identifiers":["MetaCyc:PWY-4381","MetaCyc:FASYN-INITIAL-PWY","MetaCyc:PWY-5156","GO:0000037","Wikipedia:Fatty_acid_synthesis"],"synonyms":[{"name":"fatty acid anabolism","type":"exact"},{"name":"fatty acid biosynthesis","type":"exact"},{"name":"fatty acid formation","type":"exact"},{"name":"fatty acid synthesis","type":"exact"}],"termid":"GO:0006633","terms_by_termid":{"GO:0006633":null,"GO:0006636":null,"GO:0009107":null,"GO:0019367":null,"GO:0030497":null,"GO:0034625":null,"GO:0042759":null,"GO:0042761":null,"GO:0045717":null,"GO:0046360":null,"GO:1900535":null}}


id: FYPO:0003067
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which stalled replication forks are unwound four-stranded structures resembling Holliday junctions, but are not subsequently resolved correctly.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal replication fork processing","termid":"FYPO:0003586"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000293"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0005447","FYPO:0000293","FYPO:0000002","FYPO:0001320"],"is_obsolete":false,"name":"abnormal replication fork reversal","synonyms":[{"name":"abnormal replication fork reversal during mitotic cell cycle","type":"related"},{"name":"abnormal replication fork reversal during vegetative growth","type":"exact"}],"termid":"FYPO:0003067"}


id: PBO:0039120
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"AIDA pseudogene 3","termid":"PBO:0039120"}


id: GO:2001238
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of extrinsic apoptotic signaling pathway.","definition_xrefs":["GOC:mtg_apoptosis"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of apoptotic signaling pathway","termid":"GO:2001235"},{"relation_name":"is_a","term_name":"regulation of extrinsic apoptotic signaling pathway","termid":"GO:2001236"},{"relation_name":"positively_regulates","term_name":"extrinsic apoptotic signaling pathway","termid":"GO:0097191"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0023052"},{"rel_name":"positively_regulates","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"positive regulation of extrinsic apoptotic signaling pathway","synonyms":[{"name":"positive regulation of extrinsic apoptosis","type":"narrow"},{"name":"positive regulation of extrinsic apoptotic signalling pathway","type":"exact"}],"termid":"GO:2001238"}


id: GO:0038129
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The series of molecular signals initiated by binding of a ligand to the tyrosine kinase receptor ERBB3 on the surface of a cell, and ending with the regulation of a downstream cellular process, e.g. transcription. ERBB3 receptors have impaired kinase activity and rely on the kinase activity of the heterodimer partner for activation and signal transmission.","definition_xrefs":["GOC:jc","PMID:16460914","Reactome:R-HSA-1247497"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ERBB signaling pathway","termid":"GO:0038127"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"ERBB3 signaling pathway","synonyms":[{"name":"ERBB3 signalling pathway","type":"exact"},{"name":"HER3 signaling pathway","type":"exact"},{"name":"receptor tyrosine-protein kinase erbB-3 signaling pathway","type":"exact"}],"termid":"GO:0038129"}


id: GO:1990884
data:
  {"annotated_genes":["SJAG_01638","SJAG_01877"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[88174],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1904812"},{"annotations":[103215,88175],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0051391"}]},"cv_name":"biological_process","definition":"The posttranscriptional addition of one or more acetyl groups to specific residues in an RNA molecule.","definition_xrefs":["PMID:25402480"],"direct_ancestors":[{"relation_name":"is_a","term_name":"RNA modification","termid":"GO:0009451"}],"gene_count":2,"genes_by_uniquename":{"SJAG_01638":null,"SJAG_01877":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"RNA acetylation","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:1990884","terms_by_termid":{"GO:0051391":null,"GO:1904812":null}}


id: PBO:0036356
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CCR4-Not complex NOT box subunit Not3/5","termid":"PBO:0036356"}


id: FYPO:0002553
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which double-strand break processing is abnormal. Double-strand break processing is the 5' to 3' exonucleolytic resection of the DNA at the site of the break to form a 3' single-strand DNA overhang.","definition_xrefs":["PomBase:mah","GO:0000729"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal double-strand break repair during vegetative growth","termid":"FYPO:0000777"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000298"},{"rel_name":"is_a","termid":"FYPO:0000293"}],"interesting_parent_ids":["FYPO:0000298","FYPO:0001985","FYPO:0000002","FYPO:0001320","FYPO:0000293","FYPO:0005447"],"is_obsolete":false,"name":"abnormal double-strand break processing","synonyms":[{"name":"abnormal DSB processing","type":"exact"},{"name":"abnormal double-strand break processing during mitotic cell cycle","type":"related"},{"name":"abnormal double-strand break processing during vegetative growth","type":"exact"}],"termid":"FYPO:0002553"}


id: PBO:0041735
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"calmodulin-lysine N-methyltransferase","termid":"PBO:0041735"}


id: PBO:0033793
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-inviable_mononucleate_aseptate_vegetative_cell_with_cell_cycle_arrest_in_mitotic_G2_phase","termid":"PBO:0033793"}


id: PR:O74520
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- trp663 gene.","definition_xrefs":["UniProtKB:O74520","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized membrane protein C663.14c (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC663.14c","synonyms":[{"name":"Spom972h-trp663","type":"exact"}],"termid":"PR:O74520"}


id: PBO:0076729
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transcobalamin 2","termid":"PBO:0076729"}


id: GO:0071940
data:
  {"annotated_genes":["SJAG_04238","SJAG_00974","SJAG_03483","SJAG_03013","SJAG_01321"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[85769,83683,87302,110137,113871],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0030476"}]},"cv_name":"biological_process","definition":"The aggregation, arrangement and bonding together of a set of components to form a fungal-type cell wall.","definition_xrefs":["GOC:mah","GOC:vw","PMID:19646873"],"direct_ancestors":[{"relation_name":"is_a","term_name":"fungal-type cell wall organization","termid":"GO:0031505"},{"relation_name":"is_a","term_name":"cell wall assembly","termid":"GO:0070726"},{"relation_name":"part_of","term_name":"fungal-type cell wall biogenesis","termid":"GO:0009272"}],"gene_count":5,"genes_by_uniquename":{"SJAG_00974":null,"SJAG_01321":null,"SJAG_03013":null,"SJAG_03483":null,"SJAG_04238":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0044085"},{"rel_name":"part_of","termid":"GO:0071554"},{"rel_name":"is_a","termid":"GO:0071554"}],"interesting_parent_ids":["GO:0044085","GO:0008150","GO:0071554"],"is_obsolete":false,"name":"fungal-type cell wall assembly","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"fungal-type cell wall formation","type":"related"}],"termid":"GO:0071940","terms_by_termid":{"GO:0030476":null}}


id: PBO:0110197
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitocondrial and nuclear tRNA (guanine-N2-)-methyltransferase Trm1","termid":"PBO:0110197"}


id: GO:0070962
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that increases the frequency, rate or extent of the directed killing of a bacterium by a neutrophil.","definition_xrefs":["GOC:mah","GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of neutrophil mediated killing of bacterium","termid":"GO:0070950"},{"relation_name":"is_a","term_name":"positive regulation of neutrophil mediated killing of symbiont cell","termid":"GO:0070961"},{"relation_name":"is_a","term_name":"positive regulation of defense response to bacterium","termid":"GO:1900426"},{"relation_name":"positively_regulates","term_name":"neutrophil-mediated killing of bacterium","termid":"GO:0070944"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of neutrophil mediated killing of bacterium","synonyms":[{"name":"activation of neutrophil mediated killing of bacterium","type":"narrow"},{"name":"stimulation of neutrophil mediated killing of bacterium","type":"narrow"},{"name":"up regulation of neutrophil mediated killing of bacterium","type":"exact"},{"name":"up-regulation of neutrophil mediated killing of bacterium","type":"exact"},{"name":"upregulation of neutrophil mediated killing of bacterium","type":"exact"}],"termid":"GO:0070962"}


id: PBO:0090953
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ER sphingosine hydroxylase Scs7","termid":"PBO:0090953"}


id: MOD:00539
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"OBSOLETE because Unimod 179 merged wth Unimod 447 remap to ??? modification from Unimod O-linked glycosylation","definition_xrefs":["Unimod:182"],"gene_count":0,"genotype_count":0,"name":"OBSOLETE MOD:00539 threonine reduced to aminobutynate (obsolete MOD:00539)","termid":"MOD:00539"}


id: PBO:0084400
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Lunapark family member involved in ER network formation; regulates the ER asymmetry-induced inheritance block during ER stress; localizes to ER junctions and this localization is regulated by the yeast atlastin ortholog Sey1p; required for reticulophagy where it is proposed to stabilize the actin-dependent remodeling of the ER; interacts with the reticulon protein Rtn1p; induced in response to the DNA-damaging agent MMS","termid":"PBO:0084400"}


id: MOD:01296
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-glutamic acid residue to monosodium L-glutamate.","definition_xrefs":["Unimod:30#E","PubMed:12216740"],"direct_ancestors":[{"relation_name":"is_a","term_name":"monosodium salt","termid":"MOD:00423"},{"relation_name":"is_a","term_name":"modified L-glutamic acid residue","termid":"MOD:00906"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"monosodium L-glutamate","synonyms":[{"name":"Cation:Na","type":"related"},{"name":"MSG","type":"exact"},{"name":"Na1Glu","type":"exact"},{"name":"Sodium adduct","type":"related"}],"termid":"MOD:01296"}


id: GO:0140497
data:
  {"annotated_genes":["SJAG_01276","SJAG_04095","SJAG_04770","SJAG_00816"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[82957,93603,100788,114135],"is_not":false,"summary":null,"term":"GO:0140497"}]},"cv_name":"cellular_component","definition":"A complex with alpha-(1->6)-mannosyltransferase activity, located in the cis Golgi membrane; adds mannan to N-linked glycans on proteins as part of the elongation of alpha 1,6-linked Man backbone. In S. cerevisiae, contains Mnn9p, Anp1p, Mnn10p, Mnn11p, and Hoc1p.","definition_xrefs":["PMID:9430634"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mannan polymerase complex","termid":"GO:0000136"}],"gene_count":4,"genes_by_uniquename":{"SJAG_00816":null,"SJAG_01276":null,"SJAG_04095":null,"SJAG_04770":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0005794"}],"interesting_parent_ids":["GO:0005575","GO:0005794","GO:0032991","GO:0005737"],"is_obsolete":false,"name":"mannan polymerase II complex","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0140497","terms_by_termid":{"GO:0140497":null}}


id: PBO:0027792
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_phosphatase_activity","termid":"PBO:0027792"}


id: PATO:0000042
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0000042 relative distance (obsolete PATO:0000042)","termid":"PATO:0000042"}


id: PBO:0058571
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 6511a-3","termid":"PBO:0058571"}


id: GO:0015544
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Enables the transfer of phenyl propionate from one side of a membrane to the other.","definition_xrefs":["GOC:mtg_transport","TC:2.A.1.27.1"],"direct_ancestors":[{"relation_name":"is_a","term_name":"uniporter activity","termid":"GO:0015292"},{"relation_name":"is_a","term_name":"secondary active monocarboxylate transmembrane transporter activity","termid":"GO:0015355"},{"relation_name":"is_a","term_name":"propionate transmembrane transporter activity","termid":"GO:0015552"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005215"}],"interesting_parent_ids":["GO:0005215","GO:0003674","GO:0022857"],"is_obsolete":false,"name":"phenyl propionate uniporter activity","synonyms":[{"name":"phenyl propionate permease activity","type":"related"}],"termid":"GO:0015544"}


id: PBO:0042197
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cyclin E1","termid":"PBO:0042197"}


id: PBO:0075110
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nucleolar RNA, C/D box 159","termid":"PBO:0075110"}


id: GO:0045951
data:
  {"annotated_genes":["SJAG_00995"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[87718],"is_not":false,"summary":null,"term":"GO:0045951"}]},"cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of DNA recombination during mitosis.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of mitotic recombination","termid":"GO:0000019"},{"relation_name":"is_a","term_name":"positive regulation of DNA recombination","termid":"GO:0045911"},{"relation_name":"positively_regulates","term_name":"mitotic recombination","termid":"GO:0006312"}],"gene_count":1,"genes_by_uniquename":{"SJAG_00995":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0006310"},{"rel_name":"regulates","termid":"GO:0006259"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"positively_regulates","termid":"GO:0006310"},{"rel_name":"positively_regulates","termid":"GO:0006259"}],"interesting_parent_ids":["GO:0006259","GO:0008150","GO:0006310"],"is_obsolete":false,"name":"positive regulation of mitotic recombination","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"activation of mitotic recombination","type":"narrow"},{"name":"positive regulation of recombination within rDNA repeats","type":"narrow"},{"name":"stimulation of mitotic recombination","type":"narrow"},{"name":"up regulation of mitotic recombination","type":"exact"},{"name":"up-regulation of mitotic recombination","type":"exact"},{"name":"upregulation of mitotic recombination","type":"exact"}],"termid":"GO:0045951","terms_by_termid":{"GO:0045951":null}}


id: PBO:0090862
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"vacuolar amino acid transmembrane transporter Fnx1","termid":"PBO:0090862"}


id: PBO:0062228
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 5 subfamily B member 1 pseudogene","termid":"PBO:0062228"}


id: PBO:0004525
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"beta-glucosidase Psu2 (predicted)","termid":"PBO:0004525"}


id: SO:0002321
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A stop_gained (SO:0001587) variant that is degraded by nonsense-mediated decay (NMD).","definition_xrefs":["GenCC:AR"],"direct_ancestors":[{"relation_name":"is_a","term_name":"stop_gained","termid":"SO:0001587"},{"relation_name":"is_a","term_name":"NMD_triggering_variant","termid":"SO:0002319"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"stop_gained_NMD_triggering","synonyms":[{"name":"stop gained variant-nonsense-mediated decay triggering","type":"exact"},{"name":"stop gained-NMD triggering","type":"exact"}],"termid":"SO:0002321"}


id: GO:0045774
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of beta 2 integrins.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of beta 2 integrin biosynthetic process","termid":"GO:0045115"},{"relation_name":"is_a","term_name":"negative regulation of integrin biosynthetic process","termid":"GO:0045720"},{"relation_name":"negatively_regulates","term_name":"beta 2 integrin biosynthetic process","termid":"GO:0045114"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of beta 2 integrin biosynthetic process","synonyms":[{"name":"down regulation of beta 2 integrin biosynthetic process","type":"exact"},{"name":"down-regulation of beta 2 integrin biosynthetic process","type":"exact"},{"name":"downregulation of beta 2 integrin biosynthetic process","type":"exact"},{"name":"inhibition of beta 2 integrin biosynthetic process","type":"narrow"},{"name":"negative regulation of beta 2 integrin anabolism","type":"exact"},{"name":"negative regulation of beta 2 integrin biosynthesis","type":"exact"},{"name":"negative regulation of beta 2 integrin formation","type":"exact"},{"name":"negative regulation of beta 2 integrin synthesis","type":"exact"}],"termid":"GO:0045774"}


id: GO:1903311
data:
  {"annotated_genes":["SJAG_02808","SJAG_04006","SJAG_04321","SJAG_04084","SJAG_05231","SJAG_00854","SJAG_01944","SJAG_02723","SJAG_02862","SJAG_00670","SJAG_03283","SJAG_02058","SJAG_00966","SJAG_04360","SJAG_00996","SJAG_04163","SJAG_00797","SJAG_01799","SJAG_02573","SJAG_01521","SJAG_02239","SJAG_02725","SJAG_04824","SJAG_01053","SJAG_04946","SJAG_00391","SJAG_04818","SJAG_03179","SJAG_02018","SJAG_01818","SJAG_16457","SJAG_03886","SJAG_00285","SJAG_05010","SJAG_02383","SJAG_01910","SJAG_02540","SJAG_02691","SJAG_01511","SJAG_01836","SJAG_03696","SJAG_02036","SJAG_03876","SJAG_04880","SJAG_04825","SJAG_00504","SJAG_03448","SJAG_01436","SJAG_00759","SJAG_03157","SJAG_04350","SJAG_01625","SJAG_00686","SJAG_05694","SJAG_03745","SJAG_01843","SJAG_03883","SJAG_04427","SJAG_02370","SJAG_04782","SJAG_04153","SJAG_03597","SJAG_04407","SJAG_04318","SJAG_02213","SJAG_01040","SJAG_01919","SJAG_05014","SJAG_05322","SJAG_00343","SJAG_03113","SJAG_01191","SJAG_04682"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[114398],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0061158"},{"annotations":[114399,85714,77084,95838],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0070935"},{"annotations":[105824,102012,107980,105875,87082,109509],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0000290"},{"annotations":[66935],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0061157"},{"annotations":[84988,91935],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0048255"},{"annotations":[84989,84580],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1902373"},{"annotations":[85294],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0120271"},{"annotations":[103350,97874,111966,88684,91595,100243,111506,92953,114386,87797,101108,102344],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0071042"},{"annotations":[111208,85203,93863,93776,95671,107026,109352],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0000288"},{"annotations":[85295,86312,87537,94247,89971,88158,103687,112696,88064,111728,91187,113255,98840,89029,87473,105128],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0000289"},{"annotations":[87200],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0036450"},{"annotations":[91303],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1990074"},{"annotations":[114506],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1905746"},{"annotations":[73169,74337,92019,87705,106874],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0048026"},{"annotations":[102541],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0120272"},{"annotations":[96788,85204,100754],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0060213"},{"annotations":[114403,91053,108354,88660],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0000381"},{"annotations":[88205],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0031440"},{"annotations":[112720],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0061013"},{"annotations":[94307],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1905744"},{"annotations":[95517,74862],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0050684"},{"annotations":[114643,89377],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0048024"},{"annotations":[113371,84581,83892],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0043488"},{"annotations":[87053,85718,85308],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:2000815"},{"annotations":[94248],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0060211"}]},"cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of mRNA metabolic process.","definition_xrefs":["GOC:vw","GO_REF:0000058","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of RNA metabolic process","termid":"GO:0051252"},{"relation_name":"regulates","term_name":"mRNA metabolic process","termid":"GO:0016071"}],"gene_count":73,"genes_by_uniquename":{"SJAG_00285":null,"SJAG_00343":null,"SJAG_00391":null,"SJAG_00504":null,"SJAG_00670":null,"SJAG_00686":null,"SJAG_00759":null,"SJAG_00797":null,"SJAG_00854":null,"SJAG_00966":null,"SJAG_00996":null,"SJAG_01040":null,"SJAG_01053":null,"SJAG_01191":null,"SJAG_01436":null,"SJAG_01511":null,"SJAG_01521":null,"SJAG_01625":null,"SJAG_01799":null,"SJAG_01818":null,"SJAG_01836":null,"SJAG_01843":null,"SJAG_01910":null,"SJAG_01919":null,"SJAG_01944":null,"SJAG_02018":null,"SJAG_02036":null,"SJAG_02058":null,"SJAG_02213":null,"SJAG_02239":null,"SJAG_02370":null,"SJAG_02383":null,"SJAG_02540":null,"SJAG_02573":null,"SJAG_02691":null,"SJAG_02723":null,"SJAG_02725":null,"SJAG_02808":null,"SJAG_02862":null,"SJAG_03113":null,"SJAG_03157":null,"SJAG_03179":null,"SJAG_03283":null,"SJAG_03448":null,"SJAG_03597":null,"SJAG_03696":null,"SJAG_03745":null,"SJAG_03876":null,"SJAG_03883":null,"SJAG_03886":null,"SJAG_04006":null,"SJAG_04084":null,"SJAG_04153":null,"SJAG_04163":null,"SJAG_04318":null,"SJAG_04321":null,"SJAG_04350":null,"SJAG_04360":null,"SJAG_04407":null,"SJAG_04427":null,"SJAG_04682":null,"SJAG_04782":null,"SJAG_04818":null,"SJAG_04824":null,"SJAG_04825":null,"SJAG_04880":null,"SJAG_04946":null,"SJAG_05010":null,"SJAG_05014":null,"SJAG_05231":null,"SJAG_05322":null,"SJAG_05694":null,"SJAG_16457":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0016071"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0016071","GO:0008150"],"is_obsolete":false,"name":"regulation of mRNA metabolic process","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null,"GO_REF:0000117":null},"synonyms":[{"name":"regulation of mRNA metabolism","type":"exact"}],"termid":"GO:1903311","terms_by_termid":{"GO:0000288":null,"GO:0000289":null,"GO:0000290":null,"GO:0000381":null,"GO:0031440":null,"GO:0036450":null,"GO:0043488":null,"GO:0048024":null,"GO:0048026":null,"GO:0048255":null,"GO:0050684":null,"GO:0060211":null,"GO:0060213":null,"GO:0061013":null,"GO:0061157":null,"GO:0061158":null,"GO:0070935":null,"GO:0071042":null,"GO:0120271":null,"GO:0120272":null,"GO:1902373":null,"GO:1905744":null,"GO:1905746":null,"GO:1990074":null,"GO:2000815":null}}


id: PBO:0087180
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA polymerase I subunit A12.2; contains two zinc binding domains, and the N terminal domain is responsible for anchoring to the RNA pol I complex; physically interacts with transcriptional activator Msn4p, to regulate transcription of AYR1, a gene involved in lipid metabolism","termid":"PBO:0087180"}


id: GO:0019182
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Enables the transmembrane transfer of a chloride ion by a channel that opens when histamine has been bound by the channel complex or one of its constituent parts.","definition_xrefs":["GOC:mtg_transport","ISBN:0815340729"],"direct_ancestors":[{"relation_name":"is_a","term_name":"chloride channel activity","termid":"GO:0005254"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0022857","GO:0005215"],"is_obsolete":false,"name":"histamine-gated chloride channel activity","termid":"GO:0019182"}


id: GO:0071257
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an electrical stimulus.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to electrical stimulus","termid":"GO:0051602"},{"relation_name":"is_a","term_name":"cellular response to abiotic stimulus","termid":"GO:0071214"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cellular response to electrical stimulus","synonyms":[{"name":"cellular response to electricity","type":"related"}],"termid":"GO:0071257"}


id: PBO:0068833
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 71, pseudogene","termid":"PBO:0068833"}


id: PBO:0079099
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-Tyr (anticodon GTA) 12-1","termid":"PBO:0079099"}


id: GO:0051346
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops or reduces the rate of hydrolase activity, the catalysis of the hydrolysis of various bonds.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of catalytic activity","termid":"GO:0043086"},{"relation_name":"is_a","term_name":"regulation of hydrolase activity","termid":"GO:0051336"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of hydrolase activity","synonyms":[{"name":"down regulation of hydrolase activity","type":"exact"},{"name":"down-regulation of hydrolase activity","type":"exact"},{"name":"downregulation of hydrolase activity","type":"exact"},{"name":"hydrolase inhibitor","type":"exact"},{"name":"inhibition of hydrolase activity","type":"narrow"}],"termid":"GO:0051346"}


id: GO:0090164
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The asymmetric formation of a continuous ribbon of interconnected Golgi stacks of flat cisternae that contributes to the establishment of epithelial cell polarity.","definition_xrefs":["GOC:dph","GOC:ascb_2009","GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Golgi ribbon formation","termid":"GO:0090161"},{"relation_name":"part_of","term_name":"establishment of epithelial cell polarity","termid":"GO:0090162"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0007163"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0007163"],"is_obsolete":false,"name":"asymmetric Golgi ribbon formation","termid":"GO:0090164"}


id: GO:1900789
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of pseurotin A.","definition_xrefs":["GOC:di","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"lactam catabolic process","termid":"GO:0072340"},{"relation_name":"is_a","term_name":"pseurotin A metabolic process","termid":"GO:1900788"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0044248"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0044281","GO:0044248","GO:0008150"],"is_obsolete":false,"name":"pseurotin A catabolic process","synonyms":[{"name":"Pseurotin breakdown","type":"related"},{"name":"Pseurotin catabolic process","type":"related"},{"name":"Pseurotin catabolism","type":"related"},{"name":"Pseurotin degradation","type":"related"},{"name":"pseurotin A breakdown","type":"exact"},{"name":"pseurotin A catabolism","type":"exact"},{"name":"pseurotin A degradation","type":"exact"}],"termid":"GO:1900789"}


id: GO:1902754
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of renal amino acid absorption.","definition_xrefs":["PMID:1526373","GO_REF:0000058","GOC:hjd","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of multicellular organismal process","termid":"GO:0051240"},{"relation_name":"is_a","term_name":"regulation of renal amino acid absorption","termid":"GO:1902752"},{"relation_name":"positively_regulates","term_name":"renal amino acid absorption","termid":"GO:1990297"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of renal amino acid absorption","synonyms":[{"name":"activation of renal amino acid absorption","type":"narrow"},{"name":"up regulation of renal amino acid absorption","type":"exact"},{"name":"up-regulation of renal amino acid absorption","type":"exact"},{"name":"upregulation of renal amino acid absorption","type":"exact"}],"termid":"GO:1902754"}


id: PR:O94457
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- erg31 gene.","definition_xrefs":["PRO:DNx","UniProtKB:O94457"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"delta(7)-sterol 5(6)-desaturase erg31 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC1687.16c","synonyms":[{"name":"C-5 sterol desaturase erg31 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-erg31","type":"exact"},{"name":"ergosterol Delta(5,6) desaturase erg31 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"ergosterol biosynthesis protein 31 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"sterol-C5-desaturase erg31 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:O94457"}


id: PBO:0082597
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Class II abasic (AP) endonuclease involved in repair of DNA damage; resolves blocked 3' ends that result from removal of misincorporated nucleotides; homolog of human HAP1 and E. coli exoIII","termid":"PBO:0082597"}


id: GO:0047231
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: pyridoxine + UDP-D-glucose = 5'-O-beta-D-glucosylpyridoxine + H+ + UDP.","definition_xrefs":["EC:2.4.1.160","RHEA:20177"],"direct_ancestors":[{"relation_name":"is_a","term_name":"UDP-glucosyltransferase activity","termid":"GO:0035251"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016757"}],"interesting_parent_ids":["GO:0003824","GO:0016757","GO:0003674","GO:0016740"],"is_obsolete":false,"name":"pyridoxine 5'-O-beta-D-glucosyltransferase activity","secondary_identifiers":["MetaCyc:2.4.1.160-RXN","KEGG_REACTION:R01912"],"synonyms":[{"name":"UDP-glucose-pyridoxine glucosyltransferase activity","type":"related"},{"name":"UDP-glucose:pyridoxine 5'-O-beta-D-glucosyltransferase activity","type":"related"},{"name":"UDP-glucose:pyridoxine 5'-O-beta-glucosyltransferase activity","type":"related"},{"name":"UDPglucose:pyridoxine 5'-O-beta-D-glucosyltransferase activity","type":"related"},{"name":"uridine diphosphoglucose-pyridoxine 5'-beta-glucosyltransferase activity","type":"related"}],"termid":"GO:0047231"}


id: PBO:0089788
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosome biogenesis WD repeat WDR12/Ytm1 protein","termid":"PBO:0089788"}


id: PBO:0034176
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-contributes_to_condition","termid":"PBO:0034176"}


id: PBO:0065474
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"proteasome 26S subunit, non-ATPase 12","termid":"PBO:0065474"}


id: PBO:0057659
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 1251","termid":"PBO:0057659"}


id: PBO:0065671
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PTPRS antisense RNA 1","termid":"PBO:0065671"}


id: GO:0071406
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a methylmercury stimulus.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to methylmercury","termid":"GO:0051597"},{"relation_name":"is_a","term_name":"cellular response to organic substance","termid":"GO:0071310"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cellular response to methylmercury","synonyms":[{"name":"cellular response to CH3-Hg+","type":"exact"},{"name":"cellular response to MeHg+","type":"exact"}],"termid":"GO:0071406"}


id: PBO:0083951
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Gamma subunit of the translation initiation factor eIF2B; the guanine-nucleotide exchange factor for eIF2; activity subsequently regulated by phosphorylated eIF2; first identified as a negative regulator of GCN4 expression","termid":"PBO:0083951"}


id: GO:0019399
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The cyclohexanol metabolic process in which cyclohexanol is converted to adipate.","definition_xrefs":["MetaCyc:CYCLOHEXANOL-OXIDATION-PWY"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cyclohexanol metabolic process","termid":"GO:0018891"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0008150","GO:0044281"],"is_obsolete":false,"name":"cyclohexanol oxidation","termid":"GO:0019399"}


id: PBO:0049643
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"H3 histone pseudogene 46","termid":"PBO:0049643"}


id: SO:0002087
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A non functional descendant of the coding portion of a coding transcript, part of a pseudogene.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pseudogenic_region","termid":"SO:0000462"},{"relation_name":"part_of","term_name":"pseudogenic_transcript","termid":"SO:0000516"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pseudogenic_CDS","synonyms":[{"name":"INSDC_feature:CDS","type":"broad"},{"name":"INSDC_qualifier:pseudo","type":"exact"},{"name":"pseudogenic CDS","type":"exact"}],"termid":"SO:0002087"}


id: PBO:0049871
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"hemogen","termid":"PBO:0049871"}


id: GO:0050042
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: (S)-lactate + oxaloacetate = malate + pyruvate.","definition_xrefs":["RHEA:10984","EC:1.1.99.7"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on CH-OH group of donors","termid":"GO:0016614"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016491"],"is_obsolete":false,"name":"lactate-malate transhydrogenase activity","secondary_identifiers":["KEGG_REACTION:R01447","MetaCyc:LACTATE-MALATE-TRANSHYDROGENASE-RXN"],"synonyms":[{"name":"(S)-lactate:oxaloacetate oxidoreductase activity","type":"related"},{"name":"malate-lactate transhydrogenase activity","type":"related"}],"termid":"GO:0050042"}


id: GO:0004028
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 3-chloroallyl aldehyde + H2O = 2 H+ + 2 e- + 3-chloroacrylic acid.","definition_xrefs":["UM-BBD_enzymeID:e0432"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor","termid":"GO:0016620"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0016491","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"3-chloroallyl aldehyde dehydrogenase activity","termid":"GO:0004028"}


id: PBO:0079542
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ubiquitin like modifier activating enzyme 3","termid":"PBO:0079542"}


id: GO:0031571
data:
  {"annotated_genes":["SJAG_00169","SJAG_02026"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[86839,105612],"is_not":false,"summary":null,"term":"GO:0031571"}]},"cv_name":"biological_process","definition":"A signal transduction process that contributes to a mitotic cell cycle G1/S transition DNA damage checkpoint.","definition_xrefs":["GOC:mtg_cell_cycle"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mitotic DNA damage checkpoint signaling","termid":"GO:0044773"},{"relation_name":"is_a","term_name":"mitotic G1/S transition checkpoint signaling","termid":"GO:0044819"}],"gene_count":2,"genes_by_uniquename":{"SJAG_00169":null,"SJAG_02026":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0007049"},{"rel_name":"part_of","termid":"GO:0023052"},{"rel_name":"regulates","termid":"GO:0007049"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0044772"},{"rel_name":"negatively_regulates","termid":"GO:0044772"},{"rel_name":"negatively_regulates","termid":"GO:0007049"}],"interesting_parent_ids":["GO:0044772","GO:0007049","GO:0023052","GO:0008150"],"is_obsolete":false,"name":"mitotic G1 DNA damage checkpoint signaling","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["GO:1902400","GO:0044783","GO:0072431"],"synonyms":[{"name":"G1 DNA damage checkpoint","type":"related"},{"name":"G1/S DNA damage checkpoint","type":"related"},{"name":"intracellular signal transduction involved in G1 DNA damage checkpoint","type":"exact"},{"name":"intracellular signal transduction involved in G1/S DNA damage checkpoint","type":"exact"},{"name":"intracellular signal transduction pathway involved in G1 DNA damage checkpoint","type":"exact"},{"name":"intracellular signal transduction pathway involved in G1/S DNA damage checkpoint","type":"exact"},{"name":"intracellular signaling cascade involved in G1 DNA damage checkpoint","type":"exact"},{"name":"intracellular signaling cascade involved in G1/S DNA damage checkpoint","type":"exact"},{"name":"intracellular signaling chain involved in G1 DNA damage checkpoint","type":"exact"},{"name":"intracellular signaling chain involved in G1/S DNA damage checkpoint","type":"exact"},{"name":"intracellular signaling pathway involved in G1 DNA damage checkpoint","type":"exact"},{"name":"intracellular signaling pathway involved in G1/S DNA damage checkpoint","type":"exact"},{"name":"mitotic G1 DNA damage checkpoint","type":"exact"},{"name":"mitotic cell cycle G1/S transition DNA damage checkpoint","type":"exact"},{"name":"signal transduction involved in mitotic G1 DNA damage checkpoint","type":"related"},{"name":"signal transduction involved in mitotic cell cycle G1/S transition DNA damage checkpoint","type":"related"},{"name":"signal transduction via intracellular signaling cascade involved in G1 DNA damage checkpoint","type":"exact"},{"name":"signal transduction via intracellular signaling cascade involved in G1/S DNA damage checkpoint","type":"exact"},{"name":"signal transmission via intracellular cascade involved in G1 DNA damage checkpoint","type":"exact"}],"termid":"GO:0031571","terms_by_termid":{"GO:0031571":null}}


id: FYPO:0000625
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which premeiotic DNA replication is abnormal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal DNA replication","termid":"FYPO:0000217"},{"relation_name":"is_a","term_name":"abnormal meiotic cell cycle process","termid":"FYPO:0002739"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000293"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0005447","FYPO:0000631","FYPO:0000293","FYPO:0000002"],"is_obsolete":false,"name":"abnormal premeiotic DNA replication","synonyms":[{"name":"abnormal meiotic DNA replication","type":"related"},{"name":"abnormal meiotic DNA synthesis","type":"related"},{"name":"abnormal premeiotic DNA synthesis","type":"related"}],"termid":"FYPO:0000625"}


id: PBO:0038868
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"adenosine deaminase tRNA specific 2","termid":"PBO:0038868"}


id: SO:0001542
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A sequence variant that increases the level of mature, spliced and processed RNA with respect to a reference sequence.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"level_of_transcript_variant","termid":"SO:0001540"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"increased_transcript_level_variant","synonyms":[{"name":"increased transcript level variant","type":"exact"}],"termid":"SO:0001542"}


id: GO:1903405
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process in which a protein is transported to, or maintained in, a location within a nuclear body.","definition_xrefs":["PMID:24713849","GOC:TermGenie","GO_REF:0000087"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein localization to nucleoplasm","termid":"GO:1990173"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0051179"}],"interesting_parent_ids":["GO:0051179","GO:0008150"],"is_obsolete":false,"name":"protein localization to nuclear body","synonyms":[{"name":"protein localisation in nuclear body","type":"exact"},{"name":"protein localisation to nuclear body","type":"exact"},{"name":"protein localization in nuclear body","type":"exact"}],"termid":"GO:1903405"}


id: PBO:0030333
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_cellular_phosphoinositide_level","termid":"PBO:0030333"}


id: GO:0046106
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of thymine, 5-methyluracil, one of the two major pyrimidine bases present (as thymidine) in DNA but not found in RNA other than (as ribothymidine) in transfer RNA, where it is a minor base.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pyrimidine nucleobase biosynthetic process","termid":"GO:0019856"},{"relation_name":"is_a","term_name":"thymine metabolic process","termid":"GO:0019859"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0055086"}],"interesting_parent_ids":["GO:0008150","GO:0055086","GO:0044281"],"is_obsolete":false,"name":"thymine biosynthetic process","synonyms":[{"name":"thymine anabolism","type":"exact"},{"name":"thymine biosynthesis","type":"exact"},{"name":"thymine formation","type":"exact"},{"name":"thymine synthesis","type":"exact"}],"termid":"GO:0046106"}


id: PBO:0066185
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA binding motif protein 8A","termid":"PBO:0066185"}


id: PBO:0039713
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"apolipoprotein A5","termid":"PBO:0039713"}


id: _global:contains_process
data:
  {"annotation_feature_type":"gene","cv_name":"external","definition":"[copied from inverse property 'occurs in'] b occurs_in c =def b is a process and c is a material entity or immaterial entity& there exists a spatiotemporal region r and b occupies_spatiotemporal_region r.& forall(t) if b exists_at t then c exists_at t & there exist spatial regions s and s’ where & b spatially_projects_onto s at t& c is occupies_spatial_region s’ at t& s is a proper_continuant_part_of s’ at t","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"contains_process","secondary_identifiers":["BFO:0000067"],"termid":"_global:contains_process"}


id: PBO:0059599
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MT-ATP6 pseudogene 11","termid":"PBO:0059599"}


id: GO:0030436
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The formation of spores derived from the products of an asexual cell division. Examples of this process are found in bacteria and fungi.","definition_xrefs":["PMID:9529886","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"asexual reproduction","termid":"GO:0019954"},{"relation_name":"is_a","term_name":"sporulation","termid":"GO:0043934"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"asexual sporulation","synonyms":[{"name":"asexual reproductive sporulation","type":"exact"},{"name":"asexual spore formation","type":"exact"},{"name":"mitotic spore formation","type":"exact"},{"name":"mitotic sporulation","type":"exact"}],"termid":"GO:0030436"}


id: PBO:0038864
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"adenosine deaminase RNA specific B1","termid":"PBO:0038864"}


id: GO:0018477
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: benzaldehyde + NADP+ + H2O = benzoate + NADPH + H+.","definition_xrefs":["EC:1.2.1.7"],"direct_ancestors":[{"relation_name":"is_a","term_name":"benzaldehyde dehydrogenase [NAD(P)+] activity","termid":"GO:0019115"},{"relation_name":"is_a","term_name":"aldehyde dehydrogenase (NADP+) activity","termid":"GO:0033721"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016491"],"is_obsolete":false,"name":"benzaldehyde dehydrogenase (NADP+) activity","secondary_identifiers":["RHEA:21660","UM-BBD_enzymeID:e0079","MetaCyc:BENZALDEHYDE-DEHYDROGENASE-NADP+-RXN"],"synonyms":[{"name":"NADP-linked benzaldehyde dehydrogenase","type":"related"},{"name":"benzaldehyde:NADP+ oxidoreductase","type":"related"}],"termid":"GO:0018477"}


id: PBO:0033808
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_DNA_recombination_at_telomere_during_vegetative_growth","termid":"PBO:0033808"}


id: PR:Q10200
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPBC11C11.01 gene.","definition_xrefs":["UniProtKB:Q10200","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized protein C11C11.01 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC11C11.01","synonyms":[{"name":"Spom972h-SPBC11C11.01","type":"exact"}],"termid":"PR:Q10200"}


id: PBO:0084987
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NADP(+)-dependent glutamate dehydrogenase; synthesizes glutamate from ammonia and alpha-ketoglutarate; rate of alpha-ketoglutarate utilization differs from Gdh3p; expression regulated by nitrogen and carbon sources; GDH1 has a paralog, GDH3, that arose from the whole genome duplication","termid":"PBO:0084987"}


id: PBO:0049459
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glycogenin 2","termid":"PBO:0049459"}


id: GO:0046197
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of orcinol (5-methyl-1,3-benzenediol), an aromatic compound derived from the fermentation of lichen and synthesized by some higher plants.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"orcinol metabolic process","termid":"GO:0018940"},{"relation_name":"is_a","term_name":"secondary metabolite biosynthetic process","termid":"GO:0044550"},{"relation_name":"is_a","term_name":"phenol-containing compound biosynthetic process","termid":"GO:0046189"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0019748"}],"interesting_parent_ids":["GO:0008150","GO:0019748"],"is_obsolete":false,"name":"orcinol biosynthetic process","synonyms":[{"name":"orcinol anabolism","type":"exact"},{"name":"orcinol biosynthesis","type":"exact"},{"name":"orcinol formation","type":"exact"},{"name":"orcinol synthesis","type":"exact"}],"termid":"GO:0046197"}


id: GO:0006979
data:
  {"annotated_genes":["SJAG_06611","SJAG_02573","SJAG_02858","SJAG_04125","SJAG_03924","SJAG_05181","SJAG_00668","SJAG_03303","SJAG_04403","SJAG_01162","SJAG_06622","SJAG_03438","SJAG_01084","SJAG_03414","SJAG_04287","SJAG_02135","SJAG_02433","SJAG_04632","SJAG_04036","SJAG_03330","SJAG_01734","SJAG_02249","SJAG_04823","SJAG_02485","SJAG_04399","SJAG_04788","SJAG_06621","SJAG_04311","SJAG_03903","SJAG_00419","SJAG_00996","SJAG_02592","SJAG_00027","SJAG_02945","SJAG_01199","SJAG_01855","SJAG_01292","SJAG_03828","SJAG_03886","SJAG_03653","SJAG_02044","SJAG_00984","SJAG_05014","SJAG_02495","SJAG_00141","SJAG_04953","SJAG_03896","SJAG_01216","SJAG_02515","SJAG_03166"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[113455,95748,104756,100882,90861,114374],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0061692"},{"annotations":[91242,87702,89190,74163,110524,97595,104859,85613,93669,112826,97649,91673,90002,86424,104858,84909,104862,97127,93335,85715,104861,110796,104860,88882,84048,109537,96775,101071,103710,104857,68160,104863,84554,112142],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0034599"},{"annotations":[95749],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0034614"},{"annotations":[85308,85718,87053],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:2000815"},{"annotations":[95022,113460,84910,68462,58052,65065,88747,95907,106035,106083,84477],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0019430"}]},"cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals.","definition_xrefs":["PMID:12115731","GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to stress","termid":"GO:0006950"}],"gene_count":50,"genes_by_uniquename":{"SJAG_00027":null,"SJAG_00141":null,"SJAG_00419":null,"SJAG_00668":null,"SJAG_00984":null,"SJAG_00996":null,"SJAG_01084":null,"SJAG_01162":null,"SJAG_01199":null,"SJAG_01216":null,"SJAG_01292":null,"SJAG_01734":null,"SJAG_01855":null,"SJAG_02044":null,"SJAG_02135":null,"SJAG_02249":null,"SJAG_02433":null,"SJAG_02485":null,"SJAG_02495":null,"SJAG_02515":null,"SJAG_02573":null,"SJAG_02592":null,"SJAG_02858":null,"SJAG_02945":null,"SJAG_03166":null,"SJAG_03303":null,"SJAG_03330":null,"SJAG_03414":null,"SJAG_03438":null,"SJAG_03653":null,"SJAG_03828":null,"SJAG_03886":null,"SJAG_03896":null,"SJAG_03903":null,"SJAG_03924":null,"SJAG_04036":null,"SJAG_04125":null,"SJAG_04287":null,"SJAG_04311":null,"SJAG_04399":null,"SJAG_04403":null,"SJAG_04632":null,"SJAG_04788":null,"SJAG_04823":null,"SJAG_04953":null,"SJAG_05014":null,"SJAG_05181":null,"SJAG_06611":null,"SJAG_06621":null,"SJAG_06622":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"response to oxidative stress","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000033":null,"GO_REF:0000107":null,"GO_REF:0000108":null},"termid":"GO:0006979","terms_by_termid":{"GO:0019430":null,"GO:0034599":null,"GO:0034614":null,"GO:0061692":null,"GO:2000815":null}}


id: PBO:0056814
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"major facilitator superfamily domain containing 6 like","termid":"PBO:0056814"}


id: GO:0070148
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process of coupling glutamine to glutaminyl-tRNA in a mitochondrion, catalyzed by glutaminyl-tRNA synthetase. In tRNA aminoacylation, the amino acid is first activated by linkage to AMP and then transferred to either the 2'- or the 3'-hydroxyl group of the 3'-adenosine residue of the tRNA.","definition_xrefs":["GOC:mah","GOC:mcc"],"direct_ancestors":[{"relation_name":"is_a","term_name":"glutaminyl-tRNA aminoacylation","termid":"GO:0006425"},{"relation_name":"is_a","term_name":"tRNA aminoacylation for mitochondrial protein translation","termid":"GO:0070127"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006520"},{"rel_name":"part_of","termid":"GO:0140053"},{"rel_name":"is_a","termid":"GO:0006399"},{"rel_name":"part_of","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0006520","GO:0006399","GO:0008150","GO:0140053","GO:0010467"],"is_obsolete":false,"name":"mitochondrial glutaminyl-tRNA aminoacylation","termid":"GO:0070148"}


id: PBO:0045087
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dihydrolipoamide S-succinyltransferase","termid":"PBO:0045087"}


id: GO:0044796
data:
  {"annotated_genes":["SJAG_04190"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[100061],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0043626"}]},"cv_name":"cellular_component","definition":"A protein complex which is capable of increasing the processivity of nucleotide polymerization by DNA polymerase as a part of DNA replication.","definition_xrefs":["GOC:jl","GOC:bhm"],"direct_ancestors":[{"relation_name":"is_a","term_name":"enzyme activator complex","termid":"GO:0150005"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04190":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0005575","GO:0032991"],"is_obsolete":false,"name":"DNA polymerase processivity factor complex","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0044796","terms_by_termid":{"GO:0043626":null}}


id: _global:device_utilizes_material
data:
  {"annotation_feature_type":"gene","cv_name":"external","definition":"X device utilizes material Y means X and Y are material entities, and X is capable of some process P that has input Y.","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"device_utilizes_material","secondary_identifiers":["RO:0017001"],"synonyms":[{"name":"utilizes","type":"broad"}],"termid":"_global:device_utilizes_material"}


id: PATO:0000004
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A quality of inhering in a bearer by virtue of the bearer's disposition to move freely.","definition_xrefs":["PATOC:GVG"],"direct_ancestors":[{"relation_name":"is_a","term_name":"physical quality","termid":"PATO:0001018"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mobility","termid":"PATO:0000004"}


id: FYPO:0006021
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the distribution of a protein localized to chromatin along the length of genes that can be transcribed by RNA polymerase II is normal (i.e. indistinguishable from wild type).","definition_xrefs":["PMID:28366642","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal protein localization to chromatin at RNA polymerase II-transcribed genes during vegetative growth","termid":"FYPO:0007536"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001312"},{"rel_name":"is_a","termid":"FYPO:0000257"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0000257","FYPO:0000138","FYPO:0001320","FYPO:0001312"],"is_obsolete":false,"name":"normal protein distribution along RNA polymerase II-transcribed genes","synonyms":[{"name":"normal protein distribution across RNA polymerase II-transcribed genes","type":"exact"},{"name":"normal protein distribution along RNA polymerase II-regulated genes","type":"exact"},{"name":"normal protein distribution along RNA polymerase II-transcribed genes during mitotic cell cycle","type":"related"},{"name":"normal protein distribution along RNA polymerase II-transcribed genes during vegetative growth","type":"exact"},{"name":"normal protein distribution in chromatin along RNA polymerase II-transcribed genes","type":"exact"},{"name":"normal protein localization to chromatin along RNA polymerase II-transcribed genes","type":"exact"}],"termid":"FYPO:0006021"}


id: FYPO:0007936
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype in which the number of sites of  DNA breakpoint junctions is greater than normal.","definition_xrefs":["PomBase:vw"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased DNA damage","termid":"FYPO:0003546"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0000002"],"is_obsolete":false,"name":"increased number of DNA breakpoint junctions","termid":"FYPO:0007936"}


id: GO:0052387
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process by which an organism activates programmed cell death in the symbiont, where programmed cell death proceeds by apoptosis. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction.","definition_xrefs":["GOC:mtg_pamgo"],"gene_count":0,"genotype_count":0,"name":"obsolete induction by organism of symbiont apoptosis (obsolete GO:0052387)","synonyms":[{"name":"activation by organism of symbiont apoptosis","type":"exact"},{"name":"activation by organism of symbiont apoptotic programmed cell death","type":"exact"},{"name":"induction by organism of symbiont apoptosis","type":"exact"},{"name":"induction by organism of symbiont apoptotic programmed cell death","type":"exact"}],"termid":"GO:0052387"}


id: PR:Q10086
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- toe4 gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q10086"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized transcriptional regulatory protein C11D3.07c (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC11D3.07c","synonyms":[{"name":"Spom972h-toe4","type":"exact"}],"termid":"PR:Q10086"}


id: GO:2001206
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of osteoclast development.","definition_xrefs":["GOC:obol"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of osteoclast differentiation","termid":"GO:0045672"},{"relation_name":"is_a","term_name":"regulation of osteoclast development","termid":"GO:2001204"},{"relation_name":"positively_regulates","term_name":"osteoclast development","termid":"GO:0036035"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of osteoclast development","synonyms":[{"name":"positive regulation of osteoclast cell development","type":"exact"}],"termid":"GO:2001206"}


id: PBO:0082506
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Catalytic subunit of mitochondrial inner membrane peptidase complex; required for maturation of mitochondrial proteins of the intermembrane space; complex contains two catalytic subunits (Imp1p and Imp2p that differ in substrate specificty) and Som1p","termid":"PBO:0082506"}


id: GO:0060209
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The estrous cycle phase in which a female is sexually receptive.","definition_xrefs":["ISBN:0721662544","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"estrous cycle phase","termid":"GO:0060206"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"estrus","synonyms":[{"name":"oestrus","type":"exact"}],"termid":"GO:0060209"}


id: GO:0062161
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of a pyocyanine biosynthetic process.","definition_xrefs":["PMID:28715477"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of cellular biosynthetic process","termid":"GO:0031326"},{"relation_name":"is_a","term_name":"regulation of nitrogen compound metabolic process","termid":"GO:0051171"},{"relation_name":"regulates","term_name":"pyocyanine biosynthetic process","termid":"GO:0106220"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of pyocyanine biosynthetic process","synonyms":[{"name":"regulation of pyocyanin biosynthetic process","type":"exact"}],"termid":"GO:0062161"}


id: PBO:0065373
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pregnancy specific beta-1-glycoprotein 1","termid":"PBO:0065373"}


id: PBO:0056780
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mex-3 RNA binding family member B","termid":"PBO:0056780"}


id: PR:A6X972
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- gon7 gene.","definition_xrefs":["PRO:DNx","UniProtKB:A6X972"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"EKC/KEOPS complex subunit gon7 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC6B12.18","synonyms":[{"name":"Spom972h-gon7","type":"exact"}],"termid":"PR:A6X972"}


id: MOD:01967
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-arginine residue to  omega-N-(N-acetylamino)glucosyl-L-arginine.","definition_xrefs":["PubMed:23955153","RESID:AA0609"],"direct_ancestors":[{"relation_name":"is_a","term_name":"N-acetylaminoglucosylated residue","termid":"MOD:00448"},{"relation_name":"is_a","term_name":"omega-N-glycosyl-L-arginine","termid":"MOD:01980"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:00693"}],"interesting_parent_ids":["MOD:00693"],"is_obsolete":false,"name":"omega-N-(N-acetylamino)glucosyl-L-arginine","synonyms":[{"name":"(2S)-2-amino-5-[(amino[(2-N-acetylamino-2-deoxy-D-glucopyranosyl)amino]methylidene)amino]pentanoic acid","type":"exact"},{"name":"CARBOHYD N-linked (GlcNAc) arginine","type":"exact"},{"name":"N(omega)-(2-N-acetylaminoglucosyl)arginine","type":"exact"},{"name":"N(omega)-(2-acetamido-2-deoxy-D-glucopyranosyl)-L-arginine","type":"exact"},{"name":"N(omega)-(2-acetylamino-2-deoxy-D-glucopyranosyl)-L-arginine","type":"exact"},{"name":"NG-(2-N-acetylaminoglucosyl)arginine","type":"exact"},{"name":"NG-(2-acetamido-2-deoxy-D-glucopyranosyl)-L-arginine","type":"exact"},{"name":"NG-(2-acetylamino-2-deoxy-D-glucopyranosyl)-L-arginine","type":"exact"},{"name":"omega-N-(2-N-acetylaminoglucosyl)arginine","type":"exact"},{"name":"omega-N-(2-acetamido-2-deoxy-D-glucopyranosyl)-L-arginine","type":"exact"},{"name":"omega-N-(2-acetylamino-2-deoxy-D-glucopyranosyl)-L-arginine","type":"exact"},{"name":"omega-N-(N-acetylamino)glucosyl-L-arginine","type":"exact"}],"termid":"MOD:01967"}


id: PBO:0060683
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NDRG family member 3","termid":"PBO:0060683"}


id: PBO:0085672
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein involved in outer spore wall assembly; possible role in assembly of the dityrosine layer; similar to adjacent ORF, LOH1; irc18 loh1 double mutant exhibits reduced dityrosine fluorescence relative to single mutants; SWAT-GFP fusion protein localizes to the ER and vacuole, while mCherry fusion localizes to the vacuole; expression induced in respiratory-deficient cells and carbon-limited chemostat culture; null mutant displays increased levels of spontaneous Rad52p foci","termid":"PBO:0085672"}


id: FYPO:0004252
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A regulation phenotype observed in the vegetative growth phase of the life cycle in which regulation of DNA replication is normal (i.e. indistinguishable from wild type) when one or more replication forks arrest.","definition_xrefs":["PMID:24806966","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal regulation of DNA replication","termid":"FYPO:0002995"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001312"},{"rel_name":"is_a","termid":"FYPO:0000257"}],"interesting_parent_ids":["FYPO:0001312","FYPO:0001320","FYPO:0000257","FYPO:0000002"],"is_obsolete":false,"name":"normal regulation of DNA replication during replication fork arrest","synonyms":[{"name":"normal regulation of DNA replication during replication fork arrest during mitotic cell cycle","type":"exact"},{"name":"normal regulation of DNA replication during replication fork arrest during vegetative growth","type":"exact"},{"name":"normal regulation of nuclear cell cycle DNA replication during replication fork arrest","type":"exact"}],"termid":"FYPO:0004252"}


id: PBO:0063175
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"phenazine biosynthesis like protein domain containing","termid":"PBO:0063175"}


id: RO:0002332
data:
  {"annotation_feature_type":"gene","cv_name":"relationship","definition":"p regulates levels of c if p regulates some amount (PATO:0000070) of c","direct_ancestors":[{"relation_name":"is_a","term_name":"functionally_related_to","termid":"RO:0002328"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"regulates_levels_of","termid":"RO:0002332"}


id: GO:0033100
data:
  {"annotated_genes":["SJAG_00545","SJAG_00411","SJAG_02165","SJAG_01009","SJAG_02629"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[89585,101158,102391,103833],"is_not":false,"summary":null,"term":"GO:0033100"},{"annotations":[86283],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1990467"}]},"cv_name":"cellular_component","definition":"A Gcn5-independent multisubunit complex that catalyzes the acetylation of histone H3. The budding yeast complex includes Sas3p, Taf30p, and Yng1p.","definition_xrefs":["PMID:17157260","PMID:10817755"],"direct_ancestors":[{"relation_name":"is_a","term_name":"H3 histone acetyltransferase complex","termid":"GO:0070775"}],"gene_count":5,"genes_by_uniquename":{"SJAG_00411":null,"SJAG_00545":null,"SJAG_01009":null,"SJAG_02165":null,"SJAG_02629":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0005694"}],"interesting_parent_ids":["GO:0005575","GO:0005694","GO:0032991"],"is_obsolete":false,"name":"NuA3 histone acetyltransferase complex","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0033100","terms_by_termid":{"GO:0033100":null,"GO:1990467":null}}


id: GO:0001163
data:
  {"annotated_genes":["SJAG_05253","SJAG_00692","SJAG_00202","SJAG_02813","SJAG_05331","SJAG_02747"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[99176,105680],"is_not":false,"summary":null,"term":"GO:0001163"},{"annotations":[112536,88787],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0001165"},{"annotations":[107917,105080],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0001164"}]},"cv_name":"molecular_function","definition":"Binding to a specific sequence of DNA that is part of a regulatory region that controls the transcription of a gene or cistron by RNA polymerase I.","definition_xrefs":["GOC:txnOH"],"direct_ancestors":[{"relation_name":"is_a","term_name":"transcription cis-regulatory region binding","termid":"GO:0000976"}],"gene_count":6,"genes_by_uniquename":{"SJAG_00202":null,"SJAG_00692":null,"SJAG_02747":null,"SJAG_02813":null,"SJAG_05253":null,"SJAG_05331":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003677"},{"rel_name":"is_a","termid":"GO:0000976"}],"interesting_parent_ids":["GO:0003674","GO:0003677","GO:0005488","GO:0000976"],"is_obsolete":false,"name":"RNA polymerase I transcription regulatory region sequence-specific DNA binding","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["GO:0001013"],"synonyms":[{"name":"RNA polymerase I regulatory region DNA binding","type":"related"}],"termid":"GO:0001163","terms_by_termid":{"GO:0001163":null,"GO:0001164":null,"GO:0001165":null}}


id: PR:Q9UTJ3-2
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A meiotic expression up-regulated protein 1/2 (Schizosaccharomyces pombe 972h-) that is a translation product of some mRNA giving rise to a protein with the amino acid sequence represented by UniProtKB:Q9UTJ3-2.","definition_xrefs":["PRO:DNx","UniProtKB:Q9UTJ3"],"direct_ancestors":[{"relation_name":"is_a","term_name":"meiotic expression up-regulated protein 1/2 (Schizosaccharomyces pombe 972h-)","termid":"PR:Q9UTJ3"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"meiotic expression up-regulated protein 1/2 isoform meu1-2 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC1002.01","secondary_identifiers":["UniProtKB:Q9UTJ3-2"],"synonyms":[{"name":"Spom972h-meu1-1/iso:meu1-2","type":"exact"},{"name":"meiotic expression up-regulated protein 1/2 isoform SPAC1556.06.2 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"meiotic expression up-regulated protein 1/2 isoform SPAC1556.06b (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"meiotic expression up-regulated protein 1/2 isoform meu2 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:Q9UTJ3-2"}


id: FYPO:0001550
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of protein measured in a cell differs from normal during a cellular response to zinc ions. Total protein or a specific protein may be affected.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"altered protein level during vegetative growth","termid":"FYPO:0001325"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"output_of","termid":"FYPO:0006551"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0005447","FYPO:0000002","FYPO:0001320","FYPO:0006551"],"is_obsolete":false,"name":"altered protein level during cellular response to zinc ion","synonyms":[{"name":"abnormal protein level during cellular response to zinc ion","type":"exact"},{"name":"altered cellular protein level during cellular response to zinc ion during vegetative growth","type":"exact"},{"name":"altered protein level during cellular response to zinc","type":"exact"},{"name":"altered protein level during cellular response to zinc ion during mitotic cell cycle","type":"related"}],"termid":"FYPO:0001550"}


id: PBO:0028794
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_Argonaute-associated_RNA_length","termid":"PBO:0028794"}


id: GO:0018041
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The formation of a C-terminal peptidyl-glycine acid amide by hydrolysis and oxidation of an interior Gly-Gly peptide in a secreted protein.","definition_xrefs":["RESID:AA0088"],"gene_count":0,"genotype_count":0,"name":"obsolete C-terminal peptidyl-glycine amidation (obsolete GO:0018041)","termid":"GO:0018041"}


id: PBO:0005281
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"non-specific DNA binding protein Spt2 (predicted)","termid":"PBO:0005281"}


id: PBO:0089753
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"lysine methyltransferase Set8, unknown specificity","termid":"PBO:0089753"}


id: SO:0001084
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"The residue at an extremity of the sequence is not the terminal residue.","definition_xrefs":["UniProt:curation_manual","EBIBS:GAR"],"direct_ancestors":[{"relation_name":"is_a","term_name":"polypeptide_sequencing_information","termid":"SO:0001082"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"non_terminal_residue","secondary_identifiers":["BS:00072"],"synonyms":[{"name":"non terminal","type":"exact"},{"name":"non_ter","type":"exact"}],"termid":"SO:0001084"}


id: GO:0102199
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: dinitrogen oxide + H2O + NAD(P) = 2 nitric oxide + H+ + NAD(P)H.","definition_xrefs":["GOC:pz","EC:1.7.1.14"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on other nitrogenous compounds as donors, with NAD or NADP as acceptor","termid":"GO:0046857"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0016491","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"nitric oxide reductase activity (NAD(P)H-dependent) activity","secondary_identifiers":["MetaCyc:RXN-12112"],"termid":"GO:0102199"}


id: GO:1990451
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a disturbance in the homeostasis of organismal or cellular pH (with pH < 7). pH is a measure of the acidity or basicity of an aqueous solution.","definition_xrefs":["GOC:BHF","GOC:go_curators","GOC:rl","PMID:10615049"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular response to chemical stress","termid":"GO:0062197"},{"relation_name":"is_a","term_name":"cellular response to acidic pH","termid":"GO:0071468"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cellular stress response to acidic pH","synonyms":[{"name":"cellular stress response to acidity","type":"broad"}],"termid":"GO:1990451"}


id: PATO:0002185
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"Acyclic cyclicity inheres in a molecule when the atoms within the molecule do not contain at least one cycle in the atom-atom connection paths (through the bonds).","definition_xrefs":["PATOC:JH"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cyclicity","termid":"PATO:0002183"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"acyclic cyclicity","termid":"PATO:0002185"}


id: GO:0033438
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"A triplet codon-amino acid adaptor activity that recognizes an ACC codon.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"triplet codon-amino acid adaptor activity","termid":"GO:0030533"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003723"},{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0060090"}],"interesting_parent_ids":["GO:0060090","GO:0003723","GO:0005488","GO:0003674"],"is_obsolete":false,"name":"ACC codon-amino acid adaptor activity","synonyms":[{"name":"threonine tRNA","type":"related"}],"termid":"GO:0033438"}


id: GO:0009419
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The pointed extremity furthest from the cell of a pilus.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular anatomical entity","termid":"GO:0110165"},{"relation_name":"part_of","term_name":"pilus","termid":"GO:0009289"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"pilus tip","synonyms":[{"name":"fimbrial tip","type":"exact"}],"termid":"GO:0009419"}


id: GO:0051085
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process of assisting in the correct posttranslational noncovalent assembly of proteins, which is dependent on additional protein cofactors. This process occurs over one or several cycles of nucleotide hydrolysis-dependent binding and release.","definition_xrefs":["GOC:rb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"'de novo' post-translational protein folding","termid":"GO:0051084"},{"relation_name":"is_a","term_name":"chaperone-mediated protein folding","termid":"GO:0061077"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0051604"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006457"},{"rel_name":"part_of","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0008150","GO:0051604","GO:0006457","GO:0010467"],"is_obsolete":false,"name":"chaperone cofactor-dependent protein refolding","secondary_identifiers":["GO:0070389"],"synonyms":[{"name":"chaperone co-factor-dependent protein folding","type":"related"},{"name":"chaperone co-factor-dependent protein refolding","type":"exact"},{"name":"chaperone cofactor-dependent 'de novo' protein folding","type":"exact"},{"name":"chaperone cofactor-dependent protein folding","type":"exact"},{"name":"chaperone mediated protein folding requiring cofactor","type":"related"}],"termid":"GO:0051085"}


id: PBO:0077189
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"T cell leukemia homeobox 1","termid":"PBO:0077189"}


id: FYPO:0000534
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which spindle pole body localization is abnormal. Spindle pole body localization is the process in which a whole spindle pole body is transported to, or maintained in, a specific location.","definition_xrefs":["PomBase:mah","GO:0070631"],"direct_ancestors":[{"relation_name":"is_a","term_name":"localization phenotype during vegetative growth","termid":"FYPO:0001337"},{"relation_name":"is_a","term_name":"abnormal cellular process during vegetative growth","termid":"FYPO:0001362"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000138"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000002","FYPO:0000138","FYPO:0005447","FYPO:0001320"],"is_obsolete":false,"name":"abnormal mitotic spindle pole body localization","synonyms":[{"name":"abnormal mitotic SPB localization","type":"exact"},{"name":"abnormal mitotic spindle pole body localisation","type":"exact"},{"name":"abnormal position of mitotic spindle pole body","type":"related"},{"name":"abnormal spindle pole body localization during mitotic cell cycle","type":"related"},{"name":"abnormal spindle pole body localization during vegetative growth","type":"exact"},{"name":"position of spindle pole body: abnormal","type":"related"}],"termid":"FYPO:0000534"}


id: GO:0039556
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to MDA-5, a cytoplasmic pattern recognition receptor that initiates an antiviral signaling pathway upon binding to viral dsRNA.","definition_xrefs":["PMID:19019954"],"direct_ancestors":[{"relation_name":"is_a","term_name":"signaling receptor binding","termid":"GO:0005102"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005515"},{"rel_name":"is_a","termid":"GO:0005488"}],"interesting_parent_ids":["GO:0003674","GO:0005515","GO:0005488"],"is_obsolete":false,"name":"MDA-5 binding","synonyms":[{"name":"MDA5 binding","type":"exact"}],"termid":"GO:0039556"}


id: PBO:0071837
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein S2 pseudogene 32","termid":"PBO:0071837"}


id: PBO:0068384
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNF185 antisense RNA 1","termid":"PBO:0068384"}


id: SO:0000951
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A signal for RNA polymerase to terminate transcription.","direct_ancestors":[{"relation_name":"is_a","term_name":"terminator","termid":"SO:0000141"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"eukaryotic_terminator","synonyms":[{"name":"eukaryotic terminator","type":"exact"}],"termid":"SO:0000951"}


id: PBO:0088755
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"histone H2A-H2B chaperone Nap2","termid":"PBO:0088755"}


id: PBO:0061692
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nucleoporin 210 like","termid":"PBO:0061692"}


id: GO:0050956
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The series of events required for an organism to receive an electrical stimulus, convert it to a molecular signal, and recognize and characterize the signal. Many fish possess an electroception sense; for example, the electric eel uses low voltage pulses of electricity for navigation and prey location.","definition_xrefs":["Wikipedia:Electroreception","PMID:10210663","GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"sensory perception of electrical stimulus","termid":"GO:0050952"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"electroception","synonyms":[{"name":"electroception sense","type":"exact"},{"name":"electroceptive sense","type":"exact"}],"termid":"GO:0050956"}


id: PBO:0046447
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"erythropoietin receptor","termid":"PBO:0046447"}


id: GO:1990219
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process in which an organism activates, maintains or increases the frequency, rate or extent of protein levels in the host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction.","definition_xrefs":["PMID:20615948"],"gene_count":0,"genotype_count":0,"name":"obsolete positive regulation by symbiont of host protein levels (obsolete GO:1990219)","termid":"GO:1990219"}


id: PBO:0081957
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ZP3 pseudogene 1","termid":"PBO:0081957"}


id: GO:1905365
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of intralumenal vesicle formation.","definition_xrefs":["GO_REF:0000058","GOC:bc","GOC:PARL","PMID:26911690","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of endosome organization","termid":"GO:1904978"},{"relation_name":"regulates","term_name":"intralumenal vesicle formation","termid":"GO:0070676"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0061024"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0061024","GO:0008150"],"is_obsolete":false,"name":"regulation of intralumenal vesicle formation","synonyms":[{"name":"regulation of endosome membrane budding","type":"exact"}],"termid":"GO:1905365"}


id: GO:1900963
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of methanophenazine biosynthetic process.","definition_xrefs":["GOC:mengo_curators","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of cellular biosynthetic process","termid":"GO:0031327"},{"relation_name":"is_a","term_name":"regulation of methanophenazine biosynthetic process","termid":"GO:1900962"},{"relation_name":"is_a","term_name":"negative regulation of methanophenazine metabolic process","termid":"GO:1900966"},{"relation_name":"negatively_regulates","term_name":"methanophenazine biosynthetic process","termid":"GO:1900630"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of methanophenazine biosynthetic process","synonyms":[{"name":"down regulation of methanophenazine anabolism","type":"exact"},{"name":"down regulation of methanophenazine biosynthesis","type":"exact"},{"name":"down regulation of methanophenazine biosynthetic process","type":"exact"},{"name":"down regulation of methanophenazine formation","type":"exact"},{"name":"down regulation of methanophenazine synthesis","type":"exact"},{"name":"down-regulation of methanophenazine anabolism","type":"exact"},{"name":"down-regulation of methanophenazine biosynthesis","type":"exact"},{"name":"down-regulation of methanophenazine biosynthetic process","type":"exact"},{"name":"down-regulation of methanophenazine formation","type":"exact"},{"name":"down-regulation of methanophenazine synthesis","type":"exact"},{"name":"downregulation of methanophenazine anabolism","type":"exact"},{"name":"downregulation of methanophenazine biosynthesis","type":"exact"},{"name":"downregulation of methanophenazine biosynthetic process","type":"exact"},{"name":"downregulation of methanophenazine formation","type":"exact"},{"name":"downregulation of methanophenazine synthesis","type":"exact"},{"name":"inhibition of methanophenazine anabolism","type":"exact"},{"name":"inhibition of methanophenazine biosynthesis","type":"exact"},{"name":"inhibition of methanophenazine biosynthetic process","type":"narrow"},{"name":"inhibition of methanophenazine formation","type":"exact"},{"name":"inhibition of methanophenazine synthesis","type":"exact"},{"name":"negative regulation of methanophenazine anabolism","type":"exact"},{"name":"negative regulation of methanophenazine biosynthesis","type":"exact"},{"name":"negative regulation of methanophenazine formation","type":"exact"},{"name":"negative regulation of methanophenazine synthesis","type":"exact"}],"termid":"GO:1900963"}


id: PBO:0088208
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Novel ORF identified by enrichment-based proteomics","termid":"PBO:0088208"}


id: PBO:0002541
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"G-protein coupled receptor Stm1","termid":"PBO:0002541"}


id: PBO:0091086
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial inner membrane insertase Oxa101","termid":"PBO:0091086"}


id: GO:0061319
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which a relatively unspecialized cell acquires the specialized structural and/or functional features of a nephrocyte. A nephrocyte is an insect renal cell that filters hemolymph. Differentiation includes the processes involved in commitment of a cell to a specific fate and its subsequent development to the mature state.","definition_xrefs":["CL:0002520","GOC:mtg_kidney_jan10","GOC:dph","PMID:19783135"],"direct_ancestors":[{"relation_name":"is_a","term_name":"renal filtration cell differentiation","termid":"GO:0061318"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"nephrocyte differentiation","termid":"GO:0061319"}


id: GO:0004823
data:
  {"annotated_genes":["SJAG_04738","SJAG_02015"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[90712,93812],"is_not":false,"summary":null,"term":"GO:0004823"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: L-leucine + ATP + tRNA(Leu) = AMP + diphosphate + 2 H+ + Leu-tRNA(Leu).","definition_xrefs":["EC:6.1.1.4","RHEA:11688"],"direct_ancestors":[{"relation_name":"is_a","term_name":"aminoacyl-tRNA ligase activity","termid":"GO:0004812"}],"gene_count":2,"genes_by_uniquename":{"SJAG_02015":null,"SJAG_04738":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0140098"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0140101"},{"rel_name":"is_a","termid":"GO:0016874"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0140101","GO:0003674","GO:0140098","GO:0016874","GO:0003824"],"is_obsolete":false,"name":"leucine-tRNA ligase activity","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["Reactome:R-HSA-379974","KEGG_REACTION:R03657","Reactome:R-HSA-380200","MetaCyc:LEUCINE--TRNA-LIGASE-RXN"],"synonyms":[{"name":"L-leucine:tRNALeu ligase (AMP-forming)","type":"related"},{"name":"leucine translase activity","type":"related"},{"name":"leucine-tRNA synthetase activity","type":"related"},{"name":"leucyl-tRNA synthetase activity","type":"exact"},{"name":"leucyl-transfer RNA synthetase activity","type":"related"},{"name":"leucyl-transfer ribonucleate synthetase activity","type":"related"},{"name":"leucyl-transfer ribonucleic acid synthetase activity","type":"related"}],"termid":"GO:0004823","terms_by_termid":{"GO:0004823":null}}


id: PBO:0053720
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 930","termid":"PBO:0053720"}


id: GO:0102031
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: dTDP-4-acetamido-4,6-dideoxy-alpha-D-galactose + beta-D-ManNAcA-(1->4)-alpha-D-GlcNAc-1-diphospho-ditrans,polycis-undecaprenol = H+ + alpha-D-FucNAc4-(1->4)-beta-D-ManNAcA-(1->4)-D-GlcNAc-undecaprenyl diphosphate + dTDP.","definition_xrefs":["EC:2.4.1.325","GOC:pz"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hexosyltransferase activity","termid":"GO:0016758"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016757"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016740"}],"interesting_parent_ids":["GO:0016757","GO:0003674","GO:0016740","GO:0003824"],"is_obsolete":false,"name":"4-acetamido-4,6-dideoxy-D-galactose transferase activity","secondary_identifiers":["RHEA:28759","MetaCyc:FUC4NACTRANS-RXN"],"termid":"GO:0102031"}


id: PBO:0058284
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 4660","termid":"PBO:0058284"}


id: GO:0047483
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 5-phospho-alpha-D-ribose 1-diphosphate + ATP + H2O + imidazol-4-ylacetate = 1-(5-phosphoribosyl)imidazol-4-ylacetate + ADP + diphosphate + 2 H+ + phosphate.","definition_xrefs":["RHEA:16485","EC:6.3.4.8"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ligase activity, forming carbon-nitrogen bonds","termid":"GO:0016879"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016874"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003824","GO:0016874","GO:0003674"],"is_obsolete":false,"name":"imidazoleacetate-phosphoribosyldiphosphate ligase activity","secondary_identifiers":["KEGG_REACTION:R04068","MetaCyc:6.3.4.8-RXN"],"synonyms":[{"name":"5-phosphoribosylimidazoleacetate synthetase activity","type":"related"},{"name":"imidazoleacetate:5-phosphoribosyl-diphosphate ligase (ADP- and diphosphate-forming)","type":"related"}],"termid":"GO:0047483"}


id: GO:0000750
data:
  {"annotated_genes":["SJAG_00990","SJAG_01345","SJAG_00993","SJAG_02233","SJAG_01718","SJAG_01978","SJAG_02923","SJAG_03340"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[83613],"is_not":false,"summary":null,"term":"GO:0000750"},{"annotations":[88938],"is_not":false,"rel_names":["negatively_regulates","regulates"],"summary":null,"term":"GO:0090029"},{"annotations":[102154,92745,88939,84736,92066,103028,87731],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0071507"}]},"cv_name":"biological_process","definition":"A signal transduction process resulting in the relay, amplification or dampening of a signal generated in response to pheromone exposure in organisms that undergo conjugation with cellular fusion. An example of this process is found in Saccharomyces cerevisiae.","definition_xrefs":["GOC:clt"],"direct_ancestors":[{"relation_name":"is_a","term_name":"signal transduction involved in positive regulation of conjugation with cellular fusion","termid":"GO:0032005"},{"relation_name":"part_of","term_name":"response to pheromone triggering conjugation with cellular fusion","termid":"GO:0000749"}],"gene_count":8,"genes_by_uniquename":{"SJAG_00990":null,"SJAG_00993":null,"SJAG_01345":null,"SJAG_01718":null,"SJAG_01978":null,"SJAG_02233":null,"SJAG_02923":null,"SJAG_03340":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0000747"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0023052"},{"rel_name":"positively_regulates","termid":"GO:0000747"}],"interesting_parent_ids":["GO:0008150","GO:0023052","GO:0000747"],"is_obsolete":false,"name":"pheromone-dependent signal transduction involved in conjugation with cellular fusion","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["GO:0007330","GO:0030454"],"synonyms":[{"name":"transduction of mating signal","type":"broad"}],"termid":"GO:0000750","terms_by_termid":{"GO:0000750":null,"GO:0071507":null,"GO:0090029":null}}


id: GO:0033312
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways leading to the formation of chlorophyll a, via the intermediate geranylgeranyl-chlorophyll a.","definition_xrefs":["MetaCyc:PWY-5064","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"chlorophyll a biosynthetic process","termid":"GO:0033305"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0033013"}],"interesting_parent_ids":["GO:0033013","GO:0008150"],"is_obsolete":false,"name":"chlorophyll a biosynthetic process via geranylgeranyl-chlorophyll a","synonyms":[{"name":"chlorophyll a anabolism via geranylgeranyl-chlorophyll a","type":"exact"},{"name":"chlorophyll a biosynthesis via geranylgeranyl-chlorophyll a","type":"exact"},{"name":"chlorophyll a formation via geranylgeranyl-chlorophyll a","type":"exact"},{"name":"chlorophyll a synthesis via geranylgeranyl-chlorophyll a","type":"exact"}],"termid":"GO:0033312"}


id: PATO:0000248
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0000248 pupillary reflex (obsolete PATO:0000248)","termid":"PATO:0000248"}


id: GO:0036027
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A heterodimeric protein complex that contains protein C inhibitor (SERPINA5) and urokinase-type plasminogen activator (PLAU); formation of the complex inhibits the serine protease activity of urokinase-type plasminogen activator.","definition_xrefs":["PMID:10340997","GOC:ans","PMID:8536714","PMID:3501295"],"direct_ancestors":[{"relation_name":"is_a","term_name":"serine protease inhibitor complex","termid":"GO:0097180"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0032991","GO:0005575"],"is_obsolete":false,"name":"protein C inhibitor-PLAU complex","synonyms":[{"name":"PCI-PLAU complex","type":"exact"},{"name":"SERPINA5-PLAU complex","type":"exact"},{"name":"plasma serine protease inhibitor-PLAU complex","type":"exact"},{"name":"protein C inhibitor-U-plasminogen activator complex","type":"exact"},{"name":"protein C inhibitor-uPA complex","type":"exact"},{"name":"protein C inhibitor-urokinase-type plasminogen activator complex","type":"exact"},{"name":"serpin A5-PLAU complex","type":"exact"}],"termid":"GO:0036027"}


id: PBO:0086518
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Putative protein of unknown function; conserved across S. cerevisiae strains; null mutant displays increased levels of spontaneous Rad52 foci","termid":"PBO:0086518"}


id: GO:1904215
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of protein import into chloroplast stroma.","definition_xrefs":["PMID:25901327","GO_REF:0000058","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of transmembrane transport","termid":"GO:0034762"},{"relation_name":"is_a","term_name":"regulation of protein transport","termid":"GO:0051223"},{"relation_name":"regulates","term_name":"protein import into chloroplast stroma","termid":"GO:0045037"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0055085"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0006810","GO:0055085","GO:0008150"],"is_obsolete":false,"name":"regulation of protein import into chloroplast stroma","synonyms":[{"name":"regulation of chloroplast stroma protein import","type":"exact"},{"name":"regulation of protein transport into chloroplast stroma","type":"exact"}],"termid":"GO:1904215"}


id: PBO:0062883
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"OVCA2 serine hydrolase domain containing","termid":"PBO:0062883"}


id: GO:0055039
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A crystalline exocytotic organelle composed of small, acidic proteins existing primarily as disulphide-linked dimers. The trichocyst is an organelle that releases long filamentous proteins that capture predators in net-like structures, to slow them down when the cell is disturbed. The protein is nontoxic and shaped like a long, striated, fibrous shaft.","definition_xrefs":["GOC:rph","PMID:3667715","GOC:jid"],"direct_ancestors":[{"relation_name":"is_a","term_name":"extracellular non-membrane-bounded organelle","termid":"GO:0043264"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005576"}],"interesting_parent_ids":["GO:0005575","GO:0005576"],"is_obsolete":false,"name":"trichocyst","secondary_identifiers":["Wikipedia:Trichocyst"],"termid":"GO:0055039"}


id: PBO:0041701
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CALHM6 antisense RNA 1","termid":"PBO:0041701"}


id: GO:0021578
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A developmental process, independent of morphogenetic (shape) change, that is required for the hindbrain to attain its fully functional state. The hindbrain is the region consisting of the medulla, pons and cerebellum. Areas of the hindbrain control motor and autonomic functions.","definition_xrefs":["GO_REF:0000021","GOC:cls","GOC:dgh","GOC:dph","GOC:jid","ISBN:0838580343"],"direct_ancestors":[{"relation_name":"is_a","term_name":"anatomical structure maturation","termid":"GO:0071695"},{"relation_name":"part_of","term_name":"central nervous system maturation","termid":"GO:0021626"},{"relation_name":"part_of","term_name":"hindbrain development","termid":"GO:0030902"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"hindbrain maturation","termid":"GO:0021578"}


id: GO:0000377
data:
  {"annotated_genes":["SJAG_00058","SJAG_04911","SJAG_01040","SJAG_03954","SJAG_05926","SJAG_04589","SJAG_00249","SJAG_00225","SJAG_02185","SJAG_03711","SJAG_03210","SJAG_03687","SJAG_03601","SJAG_01547","SJAG_01958","SJAG_02227","SJAG_03301","SJAG_04222","SJAG_02304","SJAG_00639","SJAG_00094","SJAG_03112","SJAG_02862","SJAG_03890","SJAG_04071","SJAG_01308","SJAG_01315","SJAG_03460","SJAG_03245","SJAG_01064","SJAG_02558","SJAG_01629","SJAG_04497","SJAG_00446","SJAG_03993","SJAG_04529","SJAG_02018","SJAG_00531","SJAG_00996","SJAG_01634","SJAG_00577","SJAG_05211","SJAG_01919","SJAG_03498","SJAG_02396","SJAG_01214","SJAG_00571","SJAG_02005","SJAG_00498","SJAG_01452","SJAG_03937","SJAG_02843","SJAG_03894","SJAG_04538","SJAG_01799","SJAG_05224","SJAG_03469","SJAG_16453","SJAG_00859","SJAG_01504","SJAG_02279","SJAG_03983","SJAG_02317","SJAG_01761","SJAG_00313","SJAG_01144","SJAG_05025","SJAG_04949","SJAG_03279","SJAG_01301","SJAG_02688","SJAG_02722","SJAG_05212","SJAG_01852","SJAG_01440","SJAG_01433","SJAG_02879","SJAG_04230","SJAG_04318","SJAG_04782","SJAG_01152","SJAG_00206","SJAG_02687","SJAG_03369","SJAG_00888","SJAG_01408","SJAG_05349","SJAG_01819","SJAG_05208","SJAG_01557","SJAG_05231","SJAG_03323","SJAG_05195","SJAG_03214","SJAG_04079","SJAG_04025","SJAG_02844","SJAG_02078","SJAG_00809","SJAG_04214","SJAG_04783","SJAG_01462","SJAG_02455","SJAG_04117","SJAG_00911","SJAG_03070","SJAG_05009","SJAG_02905","SJAG_00076","SJAG_01654","SJAG_04163","SJAG_00504","SJAG_02083","SJAG_00474","SJAG_02560","SJAG_00818","SJAG_03995","SJAG_00414","SJAG_00322","SJAG_03410","SJAG_03238","SJAG_02686","SJAG_02058","SJAG_00363","SJAG_01200","SJAG_04293","SJAG_01870","SJAG_00539","SJAG_04825","SJAG_00278","SJAG_03427","SJAG_01511","SJAG_03547","SJAG_02772","SJAG_03966","SJAG_01015","SJAG_00989","SJAG_04898","SJAG_05276","SJAG_01008","SJAG_04433","SJAG_00597","SJAG_03849","SJAG_04914","SJAG_02573","SJAG_03291","SJAG_02915","SJAG_01327","SJAG_00147","SJAG_05235","SJAG_04694","SJAG_03430","SJAG_00083","SJAG_05240","SJAG_01217","SJAG_02295","SJAG_00643","SJAG_04405","SJAG_02469","SJAG_01810"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[91634,109615],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0000380"},{"annotations":[113920],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0000354"},{"annotations":[102287,96459,101647],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0000349"},{"annotations":[104792,110414,100701,105484],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0000350"},{"annotations":[97033,104793],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0000389"},{"annotations":[89636,106601,109303,90585,98345,101751,106008,106590,111312,87098,106575,98511,90849,91283,108353,93554],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0000395"},{"annotations":[99022],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0000348"},{"annotations":[89215,105159,90854,93114,105485,92018,113307,97034,91479,112045,86133,92539,109907,112974,97533,84977,91069,98272,88252,110415,88500,91009,107246,58800,104598,102433,88995,107755,104794,87855,87651,111275,112495,103798,77721,114642,105998,91663,102288,92133,94179,103552,105440,98446,98506,91225,101488,88659,98828,88560,101707,98974,91052,108651,88258,85468,107714,85034,88933,98801,109898,105689,107678,99023,87333,100521,88231,102225,102320,106458,91635,111951,84005,93735,103060,94527,94788,99008,99270,113125,90661,97985,101370,110922,88722,114808,83244,91851,104159,109194,114061,84487,114505,91896,100794,104456,110408,108886,85752,100702,105724,114978,98211,101504,110999,111048,87925,104690,109122,89799,93391,108443,82891,98833,90377,109492,114400,91507,86954,96460],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0045292"},{"annotations":[85716,102831],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0006376"},{"annotations":[114506],"is_not":false,"rel_names":["positively_regulates","regulates"],"summary":null,"term":"GO:1905746"},{"annotations":[106874,87705,92019,73169,74337],"is_not":false,"rel_names":["positively_regulates","regulates"],"summary":null,"term":"GO:0048026"},{"annotations":[91053,88660,108354,114403],"is_not":false,"rel_names":["regulates"],"summary":null,"term":"GO:0000381"},{"annotations":[94307],"is_not":false,"rel_names":["regulates"],"summary":null,"term":"GO:1905744"},{"annotations":[89377,114643],"is_not":false,"rel_names":["regulates"],"summary":null,"term":"GO:0048024"},{"annotations":[99024,88996,104691,101343,106876,74865,91011,107092,97534],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0000245"},{"annotations":[83245,85709,100365,84488,109918],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0000390"},{"annotations":[93736,96398],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0000393"},{"annotations":[91664,84978,106576,109304,98346,91284,90850,92540,106009,111180,97088,104459,104911,87182,101752,100392],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0000387"},{"annotations":[107679,93115,108232,93737,102436,110440,97986,101344],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0000244"},{"annotations":[96399],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0000388"},{"annotations":[102651,108444,109908],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:1903241"}]},"cv_name":"biological_process","definition":"Splicing of RNA via a series of two transesterification reactions with a bulged adenosine residue from the intron branch point as the initiating nucleophile. When the initial RNA for the splicing reaction is a single molecule (cis splicing), the excised intron is released in a lariat structure.","definition_xrefs":["GOC:krc","PMID:11377794"],"direct_ancestors":[{"relation_name":"is_a","term_name":"RNA splicing, via transesterification reactions","termid":"GO:0000375"}],"gene_count":160,"genes_by_uniquename":{"SJAG_00058":null,"SJAG_00076":null,"SJAG_00083":null,"SJAG_00094":null,"SJAG_00147":null,"SJAG_00206":null,"SJAG_00225":null,"SJAG_00249":null,"SJAG_00278":null,"SJAG_00313":null,"SJAG_00322":null,"SJAG_00363":null,"SJAG_00414":null,"SJAG_00446":null,"SJAG_00474":null,"SJAG_00498":null,"SJAG_00504":null,"SJAG_00531":null,"SJAG_00539":null,"SJAG_00571":null,"SJAG_00577":null,"SJAG_00597":null,"SJAG_00639":null,"SJAG_00643":null,"SJAG_00809":null,"SJAG_00818":null,"SJAG_00859":null,"SJAG_00888":null,"SJAG_00911":null,"SJAG_00989":null,"SJAG_00996":null,"SJAG_01008":null,"SJAG_01015":null,"SJAG_01040":null,"SJAG_01064":null,"SJAG_01144":null,"SJAG_01152":null,"SJAG_01200":null,"SJAG_01214":null,"SJAG_01217":null,"SJAG_01301":null,"SJAG_01308":null,"SJAG_01315":null,"SJAG_01327":null,"SJAG_01408":null,"SJAG_01433":null,"SJAG_01440":null,"SJAG_01452":null,"SJAG_01462":null,"SJAG_01504":null,"SJAG_01511":null,"SJAG_01547":null,"SJAG_01557":null,"SJAG_01629":null,"SJAG_01634":null,"SJAG_01654":null,"SJAG_01761":null,"SJAG_01799":null,"SJAG_01810":null,"SJAG_01819":null,"SJAG_01852":null,"SJAG_01870":null,"SJAG_01919":null,"SJAG_01958":null,"SJAG_02005":null,"SJAG_02018":null,"SJAG_02058":null,"SJAG_02078":null,"SJAG_02083":null,"SJAG_02185":null,"SJAG_02227":null,"SJAG_02279":null,"SJAG_02295":null,"SJAG_02304":null,"SJAG_02317":null,"SJAG_02396":null,"SJAG_02455":null,"SJAG_02469":null,"SJAG_02558":null,"SJAG_02560":null,"SJAG_02573":null,"SJAG_02686":null,"SJAG_02687":null,"SJAG_02688":null,"SJAG_02722":null,"SJAG_02772":null,"SJAG_02843":null,"SJAG_02844":null,"SJAG_02862":null,"SJAG_02879":null,"SJAG_02905":null,"SJAG_02915":null,"SJAG_03070":null,"SJAG_03112":null,"SJAG_03210":null,"SJAG_03214":null,"SJAG_03238":null,"SJAG_03245":null,"SJAG_03279":null,"SJAG_03291":null,"SJAG_03301":null,"SJAG_03323":null,"SJAG_03369":null,"SJAG_03410":null,"SJAG_03427":null,"SJAG_03430":null,"SJAG_03460":null,"SJAG_03469":null,"SJAG_03498":null,"SJAG_03547":null,"SJAG_03601":null,"SJAG_03687":null,"SJAG_03711":null,"SJAG_03849":null,"SJAG_03890":null,"SJAG_03894":null,"SJAG_03937":null,"SJAG_03954":null,"SJAG_03966":null,"SJAG_03983":null,"SJAG_03993":null,"SJAG_03995":null,"SJAG_04025":null,"SJAG_04071":null,"SJAG_04079":null,"SJAG_04117":null,"SJAG_04163":null,"SJAG_04214":null,"SJAG_04222":null,"SJAG_04230":null,"SJAG_04293":null,"SJAG_04318":null,"SJAG_04405":null,"SJAG_04433":null,"SJAG_04497":null,"SJAG_04529":null,"SJAG_04538":null,"SJAG_04589":null,"SJAG_04694":null,"SJAG_04782":null,"SJAG_04783":null,"SJAG_04825":null,"SJAG_04898":null,"SJAG_04911":null,"SJAG_04914":null,"SJAG_04949":null,"SJAG_05009":null,"SJAG_05025":null,"SJAG_05195":null,"SJAG_05208":null,"SJAG_05211":null,"SJAG_05212":null,"SJAG_05224":null,"SJAG_05231":null,"SJAG_05235":null,"SJAG_05240":null,"SJAG_05276":null,"SJAG_05349":null,"SJAG_05926":null,"SJAG_16453":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0010467"],"is_obsolete":false,"name":"RNA splicing, via transesterification reactions with bulged adenosine as nucleophile","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000104":null,"GO_REF:0000107":null},"synonyms":[{"name":"lariat RNA biosynthesis","type":"related"},{"name":"lariat RNA formation","type":"related"}],"termid":"GO:0000377","terms_by_termid":{"GO:0000244":null,"GO:0000245":null,"GO:0000348":null,"GO:0000349":null,"GO:0000350":null,"GO:0000354":null,"GO:0000380":null,"GO:0000381":null,"GO:0000387":null,"GO:0000388":null,"GO:0000389":null,"GO:0000390":null,"GO:0000393":null,"GO:0000395":null,"GO:0006376":null,"GO:0045292":null,"GO:0048024":null,"GO:0048026":null,"GO:1903241":null,"GO:1905744":null,"GO:1905746":null}}


id: GO:0021802
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The radial migration of cells from the ventricular zone that is independent of radial glial cells. Cells extend processes that terminate at the pial surface and follow the processes as they migrate.","definition_xrefs":["PMID:12626695","GOC:dgh","GO_REF:0000021","GOC:cls","GOC:dph","GOC:jid"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cerebral cortex radially oriented cell migration","termid":"GO:0021799"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"somal translocation","synonyms":[{"name":"perikaryal translocation of Morest","type":"exact"}],"termid":"GO:0021802"}


id: GO:0042321
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the duration or quality of sleep, a readily reversible state of reduced awareness and metabolic activity that occurs periodically in many animals.","definition_xrefs":["GOC:jl","ISBN:0192800981","GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of circadian rhythm","termid":"GO:0042754"},{"relation_name":"is_a","term_name":"regulation of circadian sleep/wake cycle, sleep","termid":"GO:0045187"},{"relation_name":"is_a","term_name":"negative regulation of behavior","termid":"GO:0048521"},{"relation_name":"negatively_regulates","term_name":"circadian sleep/wake cycle, sleep","termid":"GO:0050802"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of circadian sleep/wake cycle, sleep","synonyms":[{"name":"down regulation of circadian sleep/wake cycle, sleep","type":"exact"},{"name":"down-regulation of circadian sleep/wake cycle, sleep","type":"exact"},{"name":"downregulation of circadian sleep/wake cycle, sleep","type":"exact"},{"name":"inhibition of circadian sleep/wake cycle, sleep","type":"narrow"},{"name":"negative regulation of sleep","type":"exact"}],"termid":"GO:0042321"}


id: PBO:0039002
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"afadin, adherens junction formation factor","termid":"PBO:0039002"}


id: PR:P47979
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- zfs1 gene.","definition_xrefs":["PRO:DNx","UniProtKB:P47979"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein zfs1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC1718.07c","synonyms":[{"name":"Spom972h-zfs1","type":"exact"},{"name":"multicopy suppressor of overexpressed cyr1 protein 4 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:P47979"}


id: FYPO:0001542
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of nickel ion measured in a cell is normal (i.e. indistinguishable from wild type).","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal level of substance in cell during vegetative growth","termid":"FYPO:0001316"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0001312"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0001312","FYPO:0000257","FYPO:0001320","FYPO:0000002"],"is_obsolete":false,"name":"normal cellular nickel level","synonyms":[{"name":"normal cellular nickel accumulation","type":"related"},{"name":"normal cellular nickel ion level","type":"exact"},{"name":"normal cellular nickel level during mitotic cell cycle","type":"related"},{"name":"normal cellular nickel level during vegetative growth","type":"exact"}],"termid":"FYPO:0001542"}


id: MOD:01157
data:
  {"annotated_genes":["SJAG_02592","SJAG_02763"],"annotation_feature_type":"gene","cv_annotations":{"PSI-MOD":[{"annotations":[115604,115602,115295,115603,115605,115296],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MOD:00046"}]},"cv_name":"PSI-MOD","definition":"A protein modification considered either as modified amino acid residues derived from natural amino acids, as a replacement by another natural amino acid, or as a replacement by an unnatural amino acid.","definition_xrefs":["PubMed:18688235"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein modification","termid":"MOD:00000"}],"gene_count":2,"genes_by_uniquename":{"SJAG_02592":null,"SJAG_02763":null},"genotype_count":0,"is_obsolete":false,"name":"protein modification categorized by amino acid modified","references_by_uniquename":{"PMID:26774782":null,"PMID:31150379":null},"termid":"MOD:01157","terms_by_termid":{"GO:0034599":null,"GO:0034605":null,"GO:0071475":null,"GO:1904547":null,"MOD:00046":null}}


id: GO:0060134
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which a startle magnitude is reduced when the startling stimulus is preceded by a low-intensity prepulse.","definition_xrefs":["GOC:dph","PMID:10341260"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of response to external stimulus","termid":"GO:0032102"},{"relation_name":"part_of","term_name":"startle response","termid":"GO:0001964"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"prepulse inhibition","secondary_identifiers":["Wikipedia:Prepulse_inhibition"],"synonyms":[{"name":"PPI","type":"related"},{"name":"pre-pulse inhibition","type":"exact"}],"termid":"GO:0060134"}


id: PBO:0036386
data:
  {"annotation_feature_type":"gene","cv_name":"complementation","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"functionally complemented by Saitoella complicata DPS1","termid":"PBO:0036386"}


id: PBO:0052515
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"kelch like family member 29","termid":"PBO:0052515"}


id: PBO:0039938
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"AT-rich interaction domain 1B","termid":"PBO:0039938"}


id: FYPO:0007902
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which mitotic cytokinesis begins at the same time as normal.","definition_xrefs":["PomBase:val"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal cytokinesis","termid":"FYPO:0001367"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001312"},{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0000257","FYPO:0001312","FYPO:0000002","FYPO:0001320"],"is_obsolete":false,"name":"normal onset of cytokinesis","termid":"FYPO:0007902"}


id: GO:2001108
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of Rho guanyl-nucleotide exchange factor activity.","definition_xrefs":["GOC:obol"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of guanyl-nucleotide exchange factor activity","termid":"GO:1905099"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of Rho guanyl-nucleotide exchange factor activity","synonyms":[{"name":"positive regulation of Rho guanine nucleotide exchange factor","type":"exact"},{"name":"positive regulation of RhoGEF","type":"exact"}],"termid":"GO:2001108"}


id: GO:0007066
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The joining of the sister chromatids of a replicated chromosome along the entire length of the chromosome that occurs during meiosis in a female.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"meiotic sister chromatid cohesion","termid":"GO:0051177"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0007049"}],"interesting_parent_ids":["GO:0008150","GO:0007049"],"is_obsolete":false,"name":"female meiosis sister chromatid cohesion","termid":"GO:0007066"}


id: GO:2000169
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of peptidyl-cysteine S-nitrosylation.","definition_xrefs":["GOC:obol"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of protein modification process","termid":"GO:0031399"},{"relation_name":"regulates","term_name":"peptidyl-cysteine S-nitrosylation","termid":"GO:0018119"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of peptidyl-cysteine S-nitrosylation","termid":"GO:2000169"}


id: GO:0070613
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of protein processing, a protein maturation process achieved by the cleavage of a peptide bond or bonds within a protein.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of proteolysis","termid":"GO:0030162"},{"relation_name":"is_a","term_name":"regulation of protein maturation","termid":"GO:1903317"},{"relation_name":"regulates","term_name":"protein processing","termid":"GO:0016485"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0051604"},{"rel_name":"regulates","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0010467","GO:0051604","GO:0008150"],"is_obsolete":false,"name":"regulation of protein processing","secondary_identifiers":["GO:0010953"],"synonyms":[{"name":"regulation of protein maturation by peptide bond cleavage","type":"exact"}],"termid":"GO:0070613"}


id: GO:0051416
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Binding to myotilin, a structural component of the Z-discs in human skeletal and cardiac muscle. Its C-terminus contains two immunoglobulin-like domains and the unique N-terminal half has a serine-rich region, with numerous potential phosphorylation sites, and a stretch of hydrophobic amino acids. Myotilin forms homodimers and binds to alpha-actinin, F-actin, and filamin C.","definition_xrefs":["PMID:11699871","PMID:15752755"],"gene_count":0,"genotype_count":0,"name":"obsolete myotilin binding (obsolete GO:0051416)","synonyms":[{"name":"myotilin binding","type":"exact"}],"termid":"GO:0051416"}


id: GO:0052711
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The pathway resulting in the formation of ergothioneine from N-alpha,N-alpha,N-alpha-trimethyl-L-histidine (also known as hercynine or histidine betaine).","definition_xrefs":["KEGG_REACTION:R04878"],"gene_count":0,"genotype_count":0,"name":"obsolete ergothioneine biosynthesis from N-alpha,N-alpha,N-alpha-trimethyl-L-histidine (obsolete GO:0052711)","synonyms":[{"name":"N-alpha,N-alpha,N-alpha-trimethyl-L-histidine catabolism to ergothioneine","type":"exact"},{"name":"ergothioneine biosynthesis from hercynine","type":"exact"},{"name":"ergothioneine biosynthesis from histidine betaine","type":"exact"},{"name":"hercynine catabolism to ergothioneine","type":"exact"},{"name":"histidine betaine catabolism to ergothioneine","type":"exact"}],"termid":"GO:0052711"}


id: PBO:0109397
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"testis expressed transcript, Y-linked 24, pseudogene","termid":"PBO:0109397"}


id: PBO:0079319
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"testis-specific transcript, Y-linked 9B","termid":"PBO:0079319"}


id: FYPO:0002048
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype characterized by normal cell morphology (i.e. size, shape, and structure indistinguishable from wild type) when the cell is subject to nitrogen starvation. Wild-type cells become spherical upon nitrogen starvation, and have a smaller volume than under nitrogen-replete conditions.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal cell morphology","termid":"FYPO:0000672"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0000257","FYPO:0000002"],"is_obsolete":false,"name":"normal cell morphology during nitrogen starvation","secondary_identifiers":["FYPO:0001957","FYPO:0001958"],"synonyms":[{"name":"cell morphology, round cells during nitrogen starvation","type":"related"},{"name":"cell morphology, rounded cells during nitrogen starvation","type":"related"},{"name":"normal cell morphology during nitrogen depletion","type":"exact"},{"name":"normal cell morphology during nitrogen deprivation","type":"exact"},{"name":"orb during nitrogen starvation","type":"exact"},{"name":"rounded cell during nitrogen starvation","type":"related"},{"name":"small spherical cell during nitrogen starvation","type":"exact"},{"name":"spherical cell during nitrogen depletion","type":"exact"},{"name":"spherical cell during nitrogen deprivation","type":"exact"},{"name":"spherical cell during nitrogen starvation","type":"exact"},{"name":"spheroid cell during nitrogen depletion","type":"related"},{"name":"spheroid cell during nitrogen deprivation","type":"related"},{"name":"spheroid cell during nitrogen starvation","type":"related"}],"termid":"FYPO:0002048"}


id: PBO:0088802
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nucleoporin, WD repeat Nup146","termid":"PBO:0088802"}


id: GO:0048213
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The binding of specific proteins to the t-SNARE/v-SNARE/SNAP25 complex, by which the Golgi vesicle prefusion complex is stabilized.","definition_xrefs":["PMID:10219233","GOC:jid","ISBN:0716731363"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein-containing complex assembly","termid":"GO:0065003"},{"relation_name":"part_of","term_name":"Golgi vesicle transport","termid":"GO:0048193"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0065003"},{"rel_name":"part_of","termid":"GO:0016192"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0044085"}],"interesting_parent_ids":["GO:0016192","GO:0008150","GO:0044085","GO:0006810","GO:0065003"],"is_obsolete":false,"name":"Golgi vesicle prefusion complex stabilization","synonyms":[{"name":"Golgi vesicle prefusion complex assembly","type":"exact"},{"name":"Golgi-derived vesicle prefusion complex stabilization","type":"exact"},{"name":"dictyosome vesicle prefusion complex stabilisation","type":"narrow"}],"termid":"GO:0048213"}


id: GO:0009687
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving abscisic acid, 5-(1-hydroxy-2,6,6,trimethyl-4-oxocyclohex-2-en-1-y1)-3-methylpenta-2,4-dienoic acid.","definition_xrefs":["ISBN:0387969845"],"direct_ancestors":[{"relation_name":"is_a","term_name":"sesquiterpenoid metabolic process","termid":"GO:0006714"},{"relation_name":"is_a","term_name":"monocarboxylic acid metabolic process","termid":"GO:0032787"},{"relation_name":"is_a","term_name":"apocarotenoid metabolic process","termid":"GO:0043288"},{"relation_name":"is_a","term_name":"olefinic compound metabolic process","termid":"GO:0120254"},{"relation_name":"is_a","term_name":"tertiary alcohol metabolic process","termid":"GO:1902644"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006629"}],"interesting_parent_ids":["GO:0006629","GO:0044281","GO:0008150"],"is_obsolete":false,"name":"abscisic acid metabolic process","synonyms":[{"name":"abscisic acid metabolism","type":"exact"}],"termid":"GO:0009687"}


id: PBO:0089407
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DNA-binding transcription factor, membrane-tethered","termid":"PBO:0089407"}


id: PBO:0085840
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm and the nucleus; relocalizes from nucleus to cytoplasm upon DNA replication stress; YOR342C has a paralog, YAL037W, that arose from the whole genome duplication","termid":"PBO:0085840"}


id: SO:1000020
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A transversion of a cytidine to a guanine.","direct_ancestors":[{"relation_name":"is_a","term_name":"pyrimidine_to_purine_transversion","termid":"SO:1000018"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"C_to_G_transversion","synonyms":[{"name":"C to G transversion","type":"exact"}],"termid":"SO:1000020"}


id: GO:0004982
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Combining with an N-formyl peptide to initiate a change in cell activity.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"G protein-coupled peptide receptor activity","termid":"GO:0008528"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0038023"}],"interesting_parent_ids":["GO:0038023","GO:0003674"],"is_obsolete":false,"name":"N-formyl peptide receptor activity","synonyms":[{"name":"Fmet-leu-phe receptor","type":"exact"}],"termid":"GO:0004982"}


id: PBO:0043177
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cold inducible RNA binding protein","termid":"PBO:0043177"}


id: GO:0030193
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of blood coagulation.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of response to external stimulus","termid":"GO:0032101"},{"relation_name":"is_a","term_name":"regulation of coagulation","termid":"GO:0050818"},{"relation_name":"is_a","term_name":"regulation of wound healing","termid":"GO:0061041"},{"relation_name":"is_a","term_name":"regulation of hemostasis","termid":"GO:1900046"},{"relation_name":"regulates","term_name":"blood coagulation","termid":"GO:0007596"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of blood coagulation","termid":"GO:0030193"}


id: PBO:0070902
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L17 pseudogene 10","termid":"PBO:0070902"}


id: PBO:0087583
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Subunit of the Anaphase-Promoting Complex/Cyclosome (APC/C); APC/C is a ubiquitin-protein ligase required for degradation of anaphase inhibitors, including mitotic cyclins, during the metaphase/anaphase transition; component of the platform domain of the APC/C, based on structural analysis; relative distribution to the nucleus increases upon DNA replication stress","termid":"PBO:0087583"}


id: FYPO:0002352
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which stress granule disassembly begins later than normal.","definition_xrefs":["PMID:21098141","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal stress granule disassembly","termid":"FYPO:0002351"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0001320","FYPO:0000002","FYPO:0005447"],"is_obsolete":false,"name":"delayed onset of stress granule disassembly","synonyms":[{"name":"delayed onset of cytoplasmic stress granule disassembly","type":"exact"},{"name":"delayed onset of stress granule disassembly during mitotic cell cycle","type":"related"},{"name":"delayed onset of stress granule disassembly during vegetative growth","type":"exact"},{"name":"delayed stress granule disassembly","type":"exact"}],"termid":"FYPO:0002352"}


id: GO:0097276
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any biological process involved in the maintenance of an internal steady state of creatinine at the level of the cell.","definition_xrefs":["PMID:12695560","GOC:yaf"],"gene_count":0,"genotype_count":0,"name":"obsolete cellular creatinine homeostasis (obsolete GO:0097276)","termid":"GO:0097276"}


id: PBO:0004001
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ubiquitin-like protein modifier Ned8","termid":"PBO:0004001"}


id: PBO:0067753
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 5S ribosomal pseudogene 52","termid":"PBO:0067753"}


id: GO:1904176
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A protein complex which is capable of carbon phosphorus lyase activity.","definition_xrefs":["PMID:21705661","PMID:22089136","PMID:23830682","PMID:17993513","GOC:TermGenie","GOC:bhm","GO_REF:0000088"],"direct_ancestors":[{"relation_name":"is_a","term_name":"catalytic complex","termid":"GO:1902494"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575","GO:0032991"],"is_obsolete":false,"name":"carbon phosphorus lyase complex","termid":"GO:1904176"}


id: GO:2000236
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of tRNA processing.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of gene expression","termid":"GO:0010629"},{"relation_name":"is_a","term_name":"negative regulation of tRNA metabolic process","termid":"GO:1903327"},{"relation_name":"is_a","term_name":"regulation of tRNA processing","termid":"GO:2000235"},{"relation_name":"negatively_regulates","term_name":"tRNA processing","termid":"GO:0008033"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0006399"},{"rel_name":"negatively_regulates","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"negatively_regulates","termid":"GO:0006399"},{"rel_name":"regulates","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0008150","GO:0010467","GO:0006399"],"is_obsolete":false,"name":"negative regulation of tRNA processing","synonyms":[{"name":"negative regulation of tRNA maturation","type":"exact"}],"termid":"GO:2000236"}


id: PBO:0055429
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2859","termid":"PBO:0055429"}


id: PBO:0058047
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 4268","termid":"PBO:0058047"}


id: PBO:0062495
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 8 subfamily B member 12","termid":"PBO:0062495"}


id: GO:0050764
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of phagocytosis, the process in which phagocytes engulf external particulate material.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of endocytosis","termid":"GO:0030100"},{"relation_name":"regulates","term_name":"phagocytosis","termid":"GO:0006909"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0016192"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0016192","GO:0006810","GO:0008150"],"is_obsolete":false,"name":"regulation of phagocytosis","termid":"GO:0050764"}


id: PBO:0039409
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"anaphase promoting complex subunit 13","termid":"PBO:0039409"}


id: PBO:0069695
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 974, pseudogene","termid":"PBO:0069695"}


id: PBO:0076957
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transforming growth factor beta induced","termid":"PBO:0076957"}


id: PBO:0047798
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"forkhead box I1","termid":"PBO:0047798"}


id: PBO:0064313
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"phospholipid phosphatase 2","termid":"PBO:0064313"}


id: SO:0000356
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"An attribute describing a sequence consisting of nucleobases bound to a repeating unit made of a D-ribose ring connected to a phosphate backbone.","definition_xrefs":["RSC:cb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nucleic_acid","termid":"SO:0000348"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA","termid":"SO:0000356"}


id: PBO:0046301
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"engrailed homeobox 1","termid":"PBO:0046301"}


id: FYPO:0005811
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the biogenesis of nuclear membrane that normally forms part of mitosis is abnormal.","definition_xrefs":["PomBase:mah","PMID:26869222"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal mitosis","termid":"FYPO:0000337"},{"relation_name":"is_a","term_name":"abnormal nuclear envelope organization","termid":"FYPO:0000815"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000337"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000631"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0000337","FYPO:0000002","FYPO:0001985","FYPO:0005447","FYPO:0000631"],"is_obsolete":false,"name":"abnormal nuclear membrane biogenesis involved in mitosis","synonyms":[{"name":"abnormal membrane addition to the nuclear membrane during division","type":"exact"},{"name":"abnormal nuclear membrane biogenesis involved in mitosis during vegetative growth","type":"exact"},{"name":"abnormal nuclear membrane biogenesis involved in mitotic nuclear division","type":"exact"},{"name":"abnormal nuclear membrane biogenesis involved nuclear division during mitotic cell cycle","type":"related"}],"termid":"FYPO:0005811"}


id: GO:0031039
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A membrane-bounded organelle of ciliated protozoan cells that contains polyploid copies of a portion of the cell's complete genome. Transcription of genes occurs in macronuclei. Some ciliate species may contain multiple macronuclei per cell.","definition_xrefs":["GOC:ns"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nucleus","termid":"GO:0005634"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005634"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575","GO:0005634"],"is_obsolete":false,"name":"macronucleus","secondary_identifiers":["Wikipedia:Macronucleus"],"termid":"GO:0031039"}


id: PBO:0064051
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"piwi-interacting RNA cluster 85","termid":"PBO:0064051"}


id: GO:0005586
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A collagen homotrimer of alpha1(III) chains; type III collagen triple helices associate to form fibrils.","definition_xrefs":["ISBN:0721639976"],"direct_ancestors":[{"relation_name":"is_a","term_name":"fibrillar collagen trimer","termid":"GO:0005583"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0005575","GO:0032991"],"is_obsolete":false,"name":"collagen type III trimer","termid":"GO:0005586"}


id: PBO:0046770
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"exosome component 10","termid":"PBO:0046770"}


id: GO:0000271
data:
  {"annotated_genes":["SJAG_03587","SJAG_03123","SJAG_04771","SJAG_03705","SJAG_01426","SJAG_01453","SJAG_04483","SJAG_00963","SJAG_00183","SJAG_04236","SJAG_05285","SJAG_04878","SJAG_00218","SJAG_01963","SJAG_01290","SJAG_01376","SJAG_04462","SJAG_04184","SJAG_02916","SJAG_03057","SJAG_04469","SJAG_04668","SJAG_02446","SJAG_01288","SJAG_04509","SJAG_02278","SJAG_02222","SJAG_04073","SJAG_00424","SJAG_04666","SJAG_00771","SJAG_01835","SJAG_01209","SJAG_02590","SJAG_01028","SJAG_01787","SJAG_00876","SJAG_00610"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[86119,89848,112637,98251],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006078"},{"annotations":[101636,90920,88949,96384],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0051072"},{"annotations":[110433],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0030979"},{"annotations":[90101],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0034413"},{"annotations":[105235],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0034412"},{"annotations":[87126],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0051274"},{"annotations":[84644,104999,110434,113882,100012],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0070600"},{"annotations":[111899,105237,103681,87117,101979,109188,83539,87127],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0071970"},{"annotations":[104536,98442],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0070880"},{"annotations":[101981],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0051278"},{"annotations":[104825],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0005978"},{"annotations":[86467,102272,77264],"is_not":false,"rel_names":["regulates","negatively_regulates"],"summary":null,"term":"GO:0045719"},{"annotations":[87980],"is_not":false,"rel_names":["regulates","positively_regulates"],"summary":null,"term":"GO:0060635"},{"annotations":[82973,87983],"is_not":false,"rel_names":["regulates","positively_regulates"],"summary":null,"term":"GO:0140748"},{"annotations":[83363],"is_not":false,"rel_names":["regulates"],"summary":null,"term":"GO:0032951"},{"annotations":[101193,113997,86300,87969,87985,98654],"is_not":false,"rel_names":["regulates"],"summary":null,"term":"GO:0090334"},{"annotations":[98656,84945,90594,87989],"is_not":false,"rel_names":["regulates"],"summary":null,"term":"GO:0070610"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of a polysaccharide, a polymer of many (typically more than 10) monosaccharide residues linked glycosidically.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"polysaccharide metabolic process","termid":"GO:0005976"},{"relation_name":"is_a","term_name":"macromolecule biosynthetic process","termid":"GO:0009059"},{"relation_name":"is_a","term_name":"carbohydrate biosynthetic process","termid":"GO:0016051"}],"gene_count":38,"genes_by_uniquename":{"SJAG_00183":null,"SJAG_00218":null,"SJAG_00424":null,"SJAG_00610":null,"SJAG_00771":null,"SJAG_00876":null,"SJAG_00963":null,"SJAG_01028":null,"SJAG_01209":null,"SJAG_01288":null,"SJAG_01290":null,"SJAG_01376":null,"SJAG_01426":null,"SJAG_01453":null,"SJAG_01787":null,"SJAG_01835":null,"SJAG_01963":null,"SJAG_02222":null,"SJAG_02278":null,"SJAG_02446":null,"SJAG_02590":null,"SJAG_02916":null,"SJAG_03057":null,"SJAG_03123":null,"SJAG_03587":null,"SJAG_03705":null,"SJAG_04073":null,"SJAG_04184":null,"SJAG_04236":null,"SJAG_04462":null,"SJAG_04469":null,"SJAG_04483":null,"SJAG_04509":null,"SJAG_04666":null,"SJAG_04668":null,"SJAG_04771":null,"SJAG_04878":null,"SJAG_05285":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005975"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0005975","GO:0008150"],"is_obsolete":false,"name":"polysaccharide biosynthetic process","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"synonyms":[{"name":"glycan biosynthesis","type":"exact"},{"name":"glycan biosynthetic process","type":"exact"},{"name":"polysaccharide anabolism","type":"exact"},{"name":"polysaccharide biosynthesis","type":"exact"},{"name":"polysaccharide formation","type":"exact"},{"name":"polysaccharide synthesis","type":"exact"}],"termid":"GO:0000271","terms_by_termid":{"GO:0005978":null,"GO:0006078":null,"GO:0030979":null,"GO:0032951":null,"GO:0034412":null,"GO:0034413":null,"GO:0045719":null,"GO:0051072":null,"GO:0051274":null,"GO:0051278":null,"GO:0060635":null,"GO:0070600":null,"GO:0070610":null,"GO:0070880":null,"GO:0071970":null,"GO:0090334":null,"GO:0140748":null}}


id: FYPO:0004303
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which a phosphatase activity is absent.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abolished catalytic activity","termid":"FYPO:0000664"},{"relation_name":"is_a","term_name":"abnormal phosphatase activity","termid":"FYPO:0004302"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000707"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000661"},{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0000654"}],"interesting_parent_ids":["FYPO:0000661","FYPO:0000707","FYPO:0000652","FYPO:0001985","FYPO:0000654"],"is_obsolete":false,"name":"abolished phosphatase activity","synonyms":[{"name":"phosphatase activity abolished","type":"exact"}],"termid":"FYPO:0004303"}


id: PBO:0054477
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1877","termid":"PBO:0054477"}


id: GO:0050342
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: S-adenosyl-L-methionine + gamma-tocopherol = S-adenosyl-L-homocysteine + alpha-tocopherol.","definition_xrefs":["MetaCyc:TOCOPHEROL-O-METHYLTRANSFERASE-RXN","EC:2.1.1.95"],"direct_ancestors":[{"relation_name":"is_a","term_name":"O-methyltransferase activity","termid":"GO:0008171"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016741"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0016740","GO:0016741","GO:0003824"],"is_obsolete":false,"name":"tocopherol O-methyltransferase activity","secondary_identifiers":["RHEA:24012"],"synonyms":[{"name":"S-adenosyl-L-methionine:gamma-tocopherol 5-O-methyltransferase activity","type":"related"},{"name":"gamma-tocopherol methyltransferase activity","type":"exact"}],"termid":"GO:0050342"}


id: GO:0047924
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: geraniol + NADP+ = geranial + NADPH.","definition_xrefs":["EC:1.1.1.183","MetaCyc:GERANIOL-DEHYDROGENASE-RXN"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor","termid":"GO:0016616"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003824","GO:0016491","GO:0003674"],"is_obsolete":false,"name":"geraniol dehydrogenase activity","secondary_identifiers":["UM-BBD_reactionID:r1163","RHEA:14521"],"synonyms":[{"name":"geraniol:NADP+ oxidoreductase activity","type":"related"}],"termid":"GO:0047924"}


id: GO:0010334
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: trans,trans-farnesyl diphosphate = a sesquiterpene + diphosphate. Sesquiterpenes are terpenes containing three isoprene units, i.e. 15 carbons.","definition_xrefs":["GOC:tair_curators","EC:4.2.3.-"],"direct_ancestors":[{"relation_name":"is_a","term_name":"terpene synthase activity","termid":"GO:0010333"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016829"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003824","GO:0016829","GO:0003674"],"is_obsolete":false,"name":"sesquiterpene synthase activity","termid":"GO:0010334"}


id: PBO:0001377
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"xanthine phosphoribosyltransferase (predicted)","termid":"PBO:0001377"}


id: PR:O14014
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- rga3 gene.","definition_xrefs":["PRO:DNx","UniProtKB:O14014"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"rho-type GTPase-activating protein 3 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC29A4.11","synonyms":[{"name":"Spom972h-rga3","type":"exact"}],"termid":"PR:O14014"}


id: PBO:0029096
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_cysteine_synthase_activity","termid":"PBO:0029096"}


id: PBO:0062948
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"proliferation-associated 2G4 pseudogene 6","termid":"PBO:0062948"}


id: PBO:0083406
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Dubious open reading frame; unlikely to encode a functional protein, based on available experimental and comparative sequence data; partially overlaps the dubious ORF YHR032W-A","termid":"PBO:0083406"}


id: PBO:0082090
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"5' to 3' exonuclease, 5' flap endonuclease; required for Okazaki fragment processing and maturation, for long-patch base-excision repair and large loop repair (LLR), ribonucleotide excision repair; member of the S. pombe RAD2/FEN1 family; relocalizes to the cytosol in response to hypoxia","termid":"PBO:0082090"}


id: PBO:0073123
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SEC11 homolog A, signal peptidase complex subunit","termid":"PBO:0073123"}


id: PBO:0039350
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"adenosylmethionine decarboxylase 1","termid":"PBO:0039350"}


id: PBO:0017802
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial lipoate-protein ligase Lip2","termid":"PBO:0017802"}


id: GO:0072490
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving toluene, methylbenzene (formula C7H8), or any of its derivatives.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"benzene-containing compound metabolic process","termid":"GO:0042537"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"toluene-containing compound metabolic process","synonyms":[{"name":"toluene and derivative metabolic process","type":"exact"},{"name":"toluene-containing compound metabolism","type":"exact"}],"termid":"GO:0072490"}


id: PATO:0001373
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A reflectivity quality inhering in a bearer by virtue of the bearer's reflecting lots of light.","definition_xrefs":["PATOC:GVG"],"direct_ancestors":[{"relation_name":"is_a","term_name":"reflectivity","termid":"PATO:0001297"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glistening","synonyms":[{"name":"glossy","type":"exact"},{"name":"shiny","type":"exact"}],"termid":"PATO:0001373"}


id: PBO:0036448
data:
  {"annotation_feature_type":"gene","cv_name":"name_description","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Can't Stop Synthesising cell wall","termid":"PBO:0036448"}


id: GO:0003088
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which the secretion of epinephrine into the bloodstream modulates the force of heart muscle contraction.","definition_xrefs":["GOC:mtg_cardio"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of the force of heart contraction by epinephrine","termid":"GO:0003059"},{"relation_name":"part_of","term_name":"positive regulation of the force of heart contraction by circulating epinephrine-norepinephrine","termid":"GO:0003089"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of the force of heart contraction by circulating epinephrine","synonyms":[{"name":"increased force of heart contraction by circulating adrenaline","type":"related"},{"name":"increased force of heart contraction by epinephrine in the bloodstream","type":"exact"},{"name":"positive regulation of heart contraction by circulating adrenaline","type":"related"},{"name":"positive regulation of heart contraction by circulating epinephrine","type":"related"}],"termid":"GO:0003088"}


id: PBO:0090094
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cytochrome c oxidase subunit Rcf2","termid":"PBO:0090094"}


id: GO:0035594
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a ganglioside, a ceramide oligosaccharide carrying in addition to other sugar residues, one or more sialic acid residues.","definition_xrefs":["GOC:yaf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"glycosphingolipid binding","termid":"GO:0043208"},{"relation_name":"is_a","term_name":"ceramide binding","termid":"GO:0097001"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0008289"},{"rel_name":"is_a","termid":"GO:0005488"}],"interesting_parent_ids":["GO:0003674","GO:0008289","GO:0005488"],"is_obsolete":false,"name":"ganglioside binding","termid":"GO:0035594"}


id: PR:O74558
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- mob2 gene.","definition_xrefs":["PRO:DNx","UniProtKB:O74558"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"maintenance of ploidy protein mob2 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC970.04c","synonyms":[{"name":"Spom972h-mob2","type":"exact"}],"termid":"PR:O74558"}


id: PBO:0068520
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U1 small nuclear 115, pseudogene","termid":"PBO:0068520"}


id: PBO:0027809
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-resistance_to_phenylarsine_oxide","termid":"PBO:0027809"}


id: PBO:0042209
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cyclin J like","termid":"PBO:0042209"}


id: PBO:0041364
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chromosome 4 open reading frame 19","termid":"PBO:0041364"}


id: GO:0009010
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: D-sorbitol 6-phosphate + NAD+ = D-fructose 6-phosphate + NADH + H+.","definition_xrefs":["EC:1.1.1.140"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor","termid":"GO:0016616"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0016491","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"sorbitol-6-phosphate 2-dehydrogenase activity","secondary_identifiers":["RHEA:19837","MetaCyc:SORB6PDEHYDROG-RXN"],"synonyms":[{"name":"D-glucitol-6-phosphate dehydrogenase activity","type":"related"},{"name":"D-sorbitol 6-phosphate dehydrogenase activity","type":"related"},{"name":"D-sorbitol-6-phosphate dehydrogenase activity","type":"related"},{"name":"D-sorbitol-6-phosphate:NAD+ 2-oxidoreductase activity","type":"related"},{"name":"glucitol-6-phosphate dehydrogenase activity","type":"related"},{"name":"ketosephosphate reductase activity","type":"related"},{"name":"sorbitol-6-P-dehydrogenase activity","type":"related"}],"termid":"GO:0009010"}


id: PATO:0000436
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0000436 concrete (obsolete PATO:0000436)","termid":"PATO:0000436"}


id: GO:2000644
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of receptor catabolic process.","definition_xrefs":["GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of cellular catabolic process","termid":"GO:0031329"},{"relation_name":"is_a","term_name":"regulation of macromolecule metabolic process","termid":"GO:0060255"},{"relation_name":"regulates","term_name":"receptor catabolic process","termid":"GO:0032801"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0044248"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0044248"],"is_obsolete":false,"name":"regulation of receptor catabolic process","synonyms":[{"name":"regulation of receptor breakdown","type":"exact"},{"name":"regulation of receptor catabolism","type":"exact"},{"name":"regulation of receptor degradation","type":"exact"}],"termid":"GO:2000644"}


id: PBO:0082225
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Alpha-arrestin involved in ubiquitin-dependent endocytosis; contributes to desensitization of agonist-occupied alpha-factor receptor Ste2p by Rsp5p-independent internalization; PPXY motif-mediated binding of the ubiquitin ligase Rsp5p is not required for adaptation; mutation suppresses the temperature sensitivity of an mck1 rim11 double mutant; SWAT-GFP and mCherry fusion proteins localize to the cytosol; ROG3 has a paralog, ROD1, that arose from the whole genome duplication","termid":"PBO:0082225"}


id: PBO:0052926
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"keratin associated protein 19-9, pseudogene","termid":"PBO:0052926"}


id: PBO:0047665
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"fukutin related protein","termid":"PBO:0047665"}


id: GO:0005731
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A region of a chromosome where nucleoli form during interphase, and where genes encoding the largest rRNA precursor transcript are tandemly arrayed.","definition_xrefs":["PMID:14504406"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nucleolar chromatin","termid":"GO:0030874"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005694"},{"rel_name":"part_of","termid":"GO:0005634"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005730"},{"rel_name":"part_of","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0005575","GO:0005694","GO:0005730","GO:0005634","GO:0032991"],"is_obsolete":false,"name":"nucleolus organizer region","secondary_identifiers":["Wikipedia:Nucleolus_organizer_region"],"synonyms":[{"name":"NOR","type":"exact"},{"name":"nucleolus organiser region","type":"exact"},{"name":"nucleolus organizer complex","type":"related"}],"termid":"GO:0005731"}


id: PBO:0090333
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ER GPI biosynthesis protein Rft1","termid":"PBO:0090333"}


id: PBO:0014267
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"aminotransferase class-III, possible transaminase, unknown specificity","termid":"PBO:0014267"}


id: PBO:0069968
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 1263, pseudogene","termid":"PBO:0069968"}


id: PBO:0072885
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SBF2 antisense RNA 1","termid":"PBO:0072885"}


id: GO:0001549
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which a subpopulation of granulosa cells surrounding the oocyte acquires the specialized features of an ovarian cumulus cell.","definition_xrefs":["PMID:30010832"],"direct_ancestors":[{"relation_name":"is_a","term_name":"developmental process involved in reproduction","termid":"GO:0003006"},{"relation_name":"is_a","term_name":"cellular process involved in reproduction in multicellular organism","termid":"GO:0022412"},{"relation_name":"is_a","term_name":"epithelial cell differentiation","termid":"GO:0030855"},{"relation_name":"part_of","term_name":"antral ovarian follicle growth","termid":"GO:0001547"},{"relation_name":"part_of","term_name":"fused antrum stage","termid":"GO:0048165"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cumulus cell differentiation","synonyms":[{"name":"ovarian cumulus cell differentiation","type":"exact"}],"termid":"GO:0001549"}


id: PBO:0046310
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"endonuclease, poly(U) specific","termid":"PBO:0046310"}


id: PBO:0054300
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1691","termid":"PBO:0054300"}


id: PR:O43082
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPBC947.07 gene.","definition_xrefs":["UniProtKB:O43082","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal RNA-processing protein 14-C (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC947.07","synonyms":[{"name":"Spom972h-SPBC947.07","type":"exact"},{"name":"ribosome biogenesis protein rrp14-C (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:O43082"}


id: PBO:0091542
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"plasma membrane inorganic phosphate transmembrane transporter Pho842","termid":"PBO:0091542"}


id: GO:0045169
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A large intracellular spectrin-rich structure that has been found in insect germline cells and mammalian hematopoietic cells. The fusome is an elongated, branched structure, formed from the spherical spectrosome organelle.","definition_xrefs":["PMID:12655376","GOC:bf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular anatomical entity","termid":"GO:0110165"},{"relation_name":"part_of","term_name":"cytoplasm","termid":"GO:0005737"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005737"}],"interesting_parent_ids":["GO:0005737","GO:0005575"],"is_obsolete":false,"name":"fusome","termid":"GO:0045169"}


id: GO:0045291
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The joining together of two independently transcribed RNAs, where the one that provides the 5' portion of the final mRNA is from a splice leader RNA (SL-RNA). The SL-RNA, or mini-exon donor sequence, is added to the 5'-end of the acceptor RNA molecule which provides the mRNA body.","definition_xrefs":["GOC:krc","ISBN:0879695897","PMID:2675423"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mRNA trans splicing, via spliceosome","termid":"GO:0000365"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0016071"}],"interesting_parent_ids":["GO:0010467","GO:0016071","GO:0008150"],"is_obsolete":false,"name":"mRNA trans splicing, SL addition","synonyms":[{"name":"nuclear mRNA trans splicing, SL addition","type":"exact"},{"name":"nuclear mRNA trans splicing, spliced leader addition","type":"exact"}],"termid":"GO:0045291"}


id: PBO:0065586
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"prothymosin alpha pseudogene 2","termid":"PBO:0065586"}


id: PBO:0066365
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"retinol dehydrogenase 8","termid":"PBO:0066365"}


id: PBO:0034390
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-has_eggs_laid_in_by","termid":"PBO:0034390"}


id: PBO:0040816
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"BICRA antisense RNA 1","termid":"PBO:0040816"}


id: GO:0015652
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: quaternary ammonium group(out) + H+(out) = quaternary ammonium group(in) + H+(in).","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"solute:proton symporter activity","termid":"GO:0015295"},{"relation_name":"is_a","term_name":"quaternary ammonium group transmembrane transporter activity","termid":"GO:0015651"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0022857"}],"interesting_parent_ids":["GO:0005215","GO:0022857","GO:0003674"],"is_obsolete":false,"name":"quaternary ammonium group:proton symporter activity","synonyms":[{"name":"quaternary ammonium group:hydrogen symporter activity","type":"exact"}],"termid":"GO:0015652"}


id: PBO:0043006
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cysteine rich hydrophobic domain 1","termid":"PBO:0043006"}


id: PBO:0041297
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"C2 calcium dependent domain containing 4A","termid":"PBO:0041297"}


id: PBO:0049116
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"G protein-coupled receptor 180","termid":"PBO:0049116"}


id: GO:0035783
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process of providing, via surface-bound receptor-ligand pairs, a second, antigen-independent, signal in addition to that provided by the T cell receptor to augment CD4-positive, alpha-beta T cell activation.","definition_xrefs":["CL:0000624","GOC:BHF","GOC:pr"],"direct_ancestors":[{"relation_name":"is_a","term_name":"T cell costimulation","termid":"GO:0031295"},{"relation_name":"is_a","term_name":"positive regulation of CD4-positive, alpha-beta T cell activation","termid":"GO:2000516"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"positively_regulates","termid":"GO:0007155"},{"rel_name":"regulates","termid":"GO:0007155"}],"interesting_parent_ids":["GO:0007155","GO:0008150"],"is_obsolete":false,"name":"CD4-positive, alpha-beta T cell costimulation","synonyms":[{"name":"CD4-positive, alpha beta T cell costimulation","type":"exact"}],"termid":"GO:0035783"}


id: GO:0010297
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a heteropolysaccharide, a glycan composed of more than one type of monosaccharide residue.","definition_xrefs":["PMID:16640603"],"direct_ancestors":[{"relation_name":"is_a","term_name":"polysaccharide binding","termid":"GO:0030247"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005488"}],"interesting_parent_ids":["GO:0003674","GO:0005488"],"is_obsolete":false,"name":"heteropolysaccharide binding","synonyms":[{"name":"heteroglycan binding","type":"exact"}],"termid":"GO:0010297"}


id: PR:O42852
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- sec20 gene.","definition_xrefs":["PRO:DNx","UniProtKB:O42852"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protein transport protein sec20 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC23A1.15c","synonyms":[{"name":"Spom972h-sec20","type":"exact"}],"termid":"PR:O42852"}


id: PBO:0050410
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"HNRNPD divergent transcript","termid":"PBO:0050410"}


id: PBO:0047301
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"phenylalanyl-tRNA synthetase 2, mitochondrial","termid":"PBO:0047301"}


id: PBO:0081422
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ZNF277 antisense RNA 1","termid":"PBO:0081422"}


id: PBO:0038732
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"actin like 6A","termid":"PBO:0038732"}


id: PBO:0111331
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small subunit processome, t-UTP complex subunit Utp8","termid":"PBO:0111331"}


id: GO:1990052
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The directed movement of a lipid from the endoplasmic reticulum (ER) to the chloroplast.","definition_xrefs":["PMID:18689504"],"direct_ancestors":[{"relation_name":"is_a","term_name":"intracellular lipid transport","termid":"GO:0032365"},{"relation_name":"is_a","term_name":"endoplasmic reticulum to chloroplast transport","termid":"GO:1901965"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0051179"}],"interesting_parent_ids":["GO:0008150","GO:0006810","GO:0051179"],"is_obsolete":false,"name":"ER to chloroplast lipid transport","synonyms":[{"name":"ER to chloroplast lipid trafficking","type":"exact"},{"name":"endoplasmic reticulum to chloroplast lipid transport","type":"exact"}],"termid":"GO:1990052"}


id: GO:0005899
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A disulfide-bonded, heterotetrameric receptor complex. The alpha chains are entirely extracellular, while each beta chain has one transmembrane domain. The ligand binds to the alpha subunit extracellular domain and the kinase is associated with the beta subunit intracellular domain.","definition_xrefs":["ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"plasma membrane signaling receptor complex","termid":"GO:0098802"},{"relation_name":"is_a","term_name":"protein kinase complex","termid":"GO:1902911"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0005886"}],"interesting_parent_ids":["GO:0005575","GO:0005886","GO:0032991"],"is_obsolete":false,"name":"insulin receptor complex","termid":"GO:0005899"}


id: GO:0005895
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A protein complex that binds interleukin-3; comprises an alpha and a beta subunit. The alpha chain is specific to the interleukin-5 receptor, whereas the beta chain is shared with the receptors for granulocyte-macrophage colony-stimulating factor and interleukin-3.","definition_xrefs":["PMID:11839579","GOC:mah","PMID:11312115"],"direct_ancestors":[{"relation_name":"is_a","term_name":"plasma membrane signaling receptor complex","termid":"GO:0098802"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0005886"}],"interesting_parent_ids":["GO:0005886","GO:0032991","GO:0005575"],"is_obsolete":false,"name":"interleukin-5 receptor complex","synonyms":[{"name":"IL-5 receptor complex","type":"exact"}],"termid":"GO:0005895"}


id: PBO:0089500
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DUF1764 family conserved eukaryotic protein, fungi, plants, apicomplexa","termid":"PBO:0089500"}


id: PBO:0070668
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L7 pseudogene 39","termid":"PBO:0070668"}


id: PBO:0046018
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"EIF2AK3 divergent transcript","termid":"PBO:0046018"}


id: GO:0043131
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which nucleated precursor cells lose their nucleus during erythrocyte maturation.","definition_xrefs":["GOC:hjd"],"direct_ancestors":[{"relation_name":"is_a","term_name":"enucleation","termid":"GO:0090601"},{"relation_name":"part_of","term_name":"enucleate erythrocyte maturation","termid":"GO:0043354"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"erythrocyte enucleation","termid":"GO:0043131"}


id: PBO:0062025
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 2 subfamily M member 7","termid":"PBO:0062025"}


id: PBO:0071728
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L39 pseudogene 26","termid":"PBO:0071728"}


id: GO:0061527
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The regulated release of dopamine by a cell in which the dopamine acts as a neurotransmitter.","definition_xrefs":["GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"axonal dopamine secretion","termid":"GO:0099124"},{"relation_name":"is_a","term_name":"catecholamine secretion, neurotransmission","termid":"GO:0160043"},{"relation_name":"part_of","term_name":"synaptic transmission, dopaminergic","termid":"GO:0001963"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"part_of","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0051179","GO:0023052","GO:0006810","GO:0008150"],"is_obsolete":false,"name":"dopamine secretion, neurotransmission","termid":"GO:0061527"}


id: PBO:0045970
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"early growth response 3","termid":"PBO:0045970"}


id: GO:0010383
data:
  {"annotated_genes":["SJAG_05001","SJAG_04771","SJAG_02916","SJAG_01290","SJAG_04236","SJAG_02278","SJAG_03057","SJAG_00620","SJAG_05285","SJAG_04666","SJAG_03587","SJAG_00218","SJAG_04483","SJAG_00667","SJAG_01453","SJAG_04327","SJAG_01787","SJAG_03013","SJAG_03705","SJAG_04462","SJAG_04184","SJAG_01017","SJAG_02192","SJAG_00876","SJAG_04868","SJAG_03646","SJAG_00610","SJAG_01028","SJAG_04864","SJAG_04668","SJAG_00424","SJAG_01288","SJAG_01835","SJAG_01171","SJAG_02222","SJAG_03123"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[90101],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0034413"},{"annotations":[105235],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0034412"},{"annotations":[84195],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0034217"},{"annotations":[97298,87303],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0034232"},{"annotations":[89654,95891],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0044347"},{"annotations":[104999,110434,113882,100012,84644],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0070600"},{"annotations":[111899,83539,105237,87127,103681,101979,109188,87117],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0071970"},{"annotations":[98442,104536],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0070880"},{"annotations":[103986,97738,90767,97739],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0070879"},{"annotations":[101981],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0051278"},{"annotations":[102580,84185],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0071966"},{"annotations":[87983,82973],"is_not":false,"rel_names":["regulates","positively_regulates"],"summary":null,"term":"GO:0140748"},{"annotations":[87969,87985,98654,113997,101193,86300],"is_not":false,"rel_names":["regulates"],"summary":null,"term":"GO:0090334"},{"annotations":[84945,87989,90594,98656],"is_not":false,"rel_names":["regulates"],"summary":null,"term":"GO:0070610"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways involving cell wall polysaccharides.","definition_xrefs":["GOC:tair_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"polysaccharide metabolic process","termid":"GO:0005976"},{"relation_name":"is_a","term_name":"cell wall macromolecule metabolic process","termid":"GO:0044036"}],"gene_count":36,"genes_by_uniquename":{"SJAG_00218":null,"SJAG_00424":null,"SJAG_00610":null,"SJAG_00620":null,"SJAG_00667":null,"SJAG_00876":null,"SJAG_01017":null,"SJAG_01028":null,"SJAG_01171":null,"SJAG_01288":null,"SJAG_01290":null,"SJAG_01453":null,"SJAG_01787":null,"SJAG_01835":null,"SJAG_02192":null,"SJAG_02222":null,"SJAG_02278":null,"SJAG_02916":null,"SJAG_03013":null,"SJAG_03057":null,"SJAG_03123":null,"SJAG_03587":null,"SJAG_03646":null,"SJAG_03705":null,"SJAG_04184":null,"SJAG_04236":null,"SJAG_04327":null,"SJAG_04462":null,"SJAG_04483":null,"SJAG_04666":null,"SJAG_04668":null,"SJAG_04771":null,"SJAG_04864":null,"SJAG_04868":null,"SJAG_05001":null,"SJAG_05285":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005975"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0071554"}],"interesting_parent_ids":["GO:0071554","GO:0005975","GO:0008150"],"is_obsolete":false,"name":"cell wall polysaccharide metabolic process","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0010383","terms_by_termid":{"GO:0034217":null,"GO:0034232":null,"GO:0034412":null,"GO:0034413":null,"GO:0044347":null,"GO:0051278":null,"GO:0070600":null,"GO:0070610":null,"GO:0070879":null,"GO:0070880":null,"GO:0071966":null,"GO:0071970":null,"GO:0090334":null,"GO:0140748":null}}


id: GO:1905279
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of retrograde transport, endosome to Golgi.","definition_xrefs":["PMID:23395371","GO_REF:0000058","GOC:bf","GOC:PARL","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of intracellular transport","termid":"GO:0032386"},{"relation_name":"is_a","term_name":"regulation of vesicle-mediated transport","termid":"GO:0060627"},{"relation_name":"regulates","term_name":"retrograde transport, endosome to Golgi","termid":"GO:0042147"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"regulates","termid":"GO:0016192"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006810","GO:0016192","GO:0008150"],"is_obsolete":false,"name":"regulation of retrograde transport, endosome to Golgi","synonyms":[{"name":"regulation of retrograde (endosome to Golgi) transport","type":"exact"}],"termid":"GO:1905279"}


id: FYPO:0000118
data:
  {"alleles_by_uniquename":{"SJAG_00118:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_00118","name":"mid2delta","uniquename":"SJAG_00118:allele-1"},"SJAG_01143:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_01143","name":"mid1delta","uniquename":"SJAG_01143:allele-1"}},"annotation_feature_type":"genotype","cv_annotations":{"multi_locus_phenotype":[{"annotations":[115379],"is_not":false,"summary":null,"term":"FYPO:0000118"}],"single_locus_phenotype":[{"annotations":[115368,115369],"is_not":false,"summary":null,"term":"FYPO:0000118"}]},"cv_name":"fission_yeast_phenotype","definition":"A physical cellular phenotype observed in the vegetative growth phase of the life cycle characterized by the presence of more than one septum in a cell.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal subcellular component during vegetative growth","termid":"FYPO:0001322"},{"relation_name":"is_a","term_name":"septated vegetative cell","termid":"FYPO:0002342"},{"relation_name":"is_a","term_name":"multiseptate cell","termid":"FYPO:0004295"},{"relation_name":"output_of","term_name":"abnormal cytokinesis","termid":"FYPO:0000032"}],"gene_count":2,"genes_by_uniquename":{"SJAG_00118":null,"SJAG_01143":null},"genotype_count":3,"genotypes_by_uniquename":{"mid1delta":{"display_name":"mid1delta","display_uniquename":"mid1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01143:allele-1","expression":"Null"}]}]},"mid1delta__mid2delta":{"display_name":"mid1delta mid2delta","display_uniquename":"mid1delta__mid2delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01143:allele-1","expression":"Null"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_00118:allele-1","expression":"Null"}]}]},"mid2delta":{"display_name":"mid2delta","display_uniquename":"mid2delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_00118:allele-1","expression":"Null"}]}]}},"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0000631"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"output_of","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0000032"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0005447","FYPO:0001320","FYPO:0000002","FYPO:0000032","FYPO:0000631"],"is_obsolete":false,"multi_locus_annotated_genes":["SJAG_01143","SJAG_00118"],"name":"multiseptate vegetative cell","references_by_uniquename":{"PMID:25866389":null},"single_locus_annotated_genes":["SJAG_01143","SJAG_00118"],"single_locus_genotype_uniquenames":["mid2delta","mid1delta"],"synonyms":[{"name":"multiseptate during mitotic cell cycle","type":"related"},{"name":"multiseptate during vegetative growth","type":"exact"},{"name":"septation defects, multiple septa during vegetative growth","type":"exact"}],"termid":"FYPO:0000118","terms_by_termid":{"FYECO:0000005":null,"FYECO:0000137":null,"FYPO:0000118":null}}


id: GO:0033236
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: an 11-beta-hydroxysteroid + NAD+ = an 11-oxosteroid + NADH + H+.","definition_xrefs":["PMID:15761036"],"gene_count":0,"genotype_count":0,"name":"obsolete 11-beta-hydroxysteroid dehydrogenase (NAD+) activity (obsolete GO:0033236)","synonyms":[{"name":"11-beta-hydroxysteroid dehydrogenase (NAD+) activity","type":"exact"}],"termid":"GO:0033236"}


id: FYPO:0002690
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A phenotype in which vegetative cell population growth is normal (i.e. indistinguishable from wild type) in a medium containing cumene hydroperoxide.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal vegetative cell population growth","termid":"FYPO:0001357"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0002057"},{"rel_name":"is_a","termid":"FYPO:0002058"},{"rel_name":"is_a","termid":"FYPO:0000139"},{"rel_name":"is_a","termid":"FYPO:0002060"},{"rel_name":"is_a","termid":"FYPO:0000003"},{"rel_name":"is_a","termid":"FYPO:0000257"}],"interesting_parent_ids":["FYPO:0000257","FYPO:0000139","FYPO:0002058","FYPO:0002057","FYPO:0002060","FYPO:0000003"],"is_obsolete":false,"name":"normal growth on cumene hydroperoxide","synonyms":[{"name":"normal cell population growth in presence of cumene hydroperoxide","type":"exact"},{"name":"normal cell population growth on cumene hydroperoxide","type":"exact"},{"name":"normal cellular response to cumene hydroperoxide","type":"related"},{"name":"normal vegetative cell population growth on cumene hydroperoxide","type":"exact"}],"termid":"FYPO:0002690"}


id: PBO:0039353
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"adenosylmethionine decarboxylase 1 pseudogene 3","termid":"PBO:0039353"}


id: PBO:0109317
data:
  {"annotation_feature_type":"gene","cv_name":"name_description","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Chromosome Loss when Overexpressed","termid":"PBO:0109317"}


id: PR:O59855
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- ssa2 gene.","definition_xrefs":["PRO:DNx","UniProtKB:O59855"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"heat shock protein ssa2 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC1739.13","synonyms":[{"name":"Spom972h-ssa2","type":"exact"}],"termid":"PR:O59855"}


id: PBO:0068460
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U1 small nuclear 36, pseudogene","termid":"PBO:0068460"}


id: GO:0015051
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Combining with an opioid to initiate a change in cell activity, with the pharmacological characteristics of X-opioid receptors.","definition_xrefs":["InterPro:IPR001420"],"gene_count":0,"genotype_count":0,"name":"obsolete X-opioid receptor activity (obsolete GO:0015051)","synonyms":[{"name":"X-opioid receptor activity","type":"exact"}],"termid":"GO:0015051"}


id: PBO:0061869
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"one cut homeobox 1","termid":"PBO:0061869"}


id: PBO:0011403
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"extension_relations_status","termid":"PBO:0011403"}


id: GO:0002203
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The hydrolysis of a peptide bond or bonds within a protein by cytosolic resident proteases during antigen processing and presentation.","definition_xrefs":["GOC:add","PMID:15224092","ISBN:0781735149","PMID:15771591"],"direct_ancestors":[{"relation_name":"is_a","term_name":"proteolysis associated with antigen processing and presentation","termid":"GO:0002496"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0030163"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0030163","GO:0008150"],"is_obsolete":false,"name":"proteolysis by cytosolic proteases associated with antigen processing and presentation","termid":"GO:0002203"}


id: PBO:0071661
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L37a pseudogene 2","termid":"PBO:0071661"}


id: PBO:0029322
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_histone_H2A_phosphorylation_at_centromeric_tDNA_during_mitotic_S_phase","termid":"PBO:0029322"}


id: GO:0004017
data:
  {"annotated_genes":["SJAG_00779","SJAG_03798","SJAG_02038"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[93852,111643,114700],"is_not":false,"summary":null,"term":"GO:0004017"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: ATP + AMP = 2 ADP.","definition_xrefs":["EC:2.7.4.3"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nucleoside monophosphate kinase activity","termid":"GO:0050145"}],"gene_count":3,"genes_by_uniquename":{"SJAG_00779":null,"SJAG_02038":null,"SJAG_03798":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016301"}],"interesting_parent_ids":["GO:0016301","GO:0016740","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"adenylate kinase activity","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["Reactome:R-HSA-110145","MetaCyc:ADENYL-KIN-RXN","Reactome:R-HSA-110141","RHEA:12973","Reactome:R-HSA-74220","Reactome:R-HSA-110144"],"synonyms":[{"name":"5'-AMP-kinase activity","type":"related"},{"name":"ATP:AMP phosphotransferase activity","type":"related"},{"name":"adenylic kinase activity","type":"related"},{"name":"adenylokinase activity","type":"related"},{"name":"myokinase activity","type":"narrow"}],"termid":"GO:0004017","terms_by_termid":{"GO:0004017":null}}


id: FYPO:0000603
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which the duration of G1 phase of a mitotic cell cycle is shorter than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal mitotic G1 phase progression","termid":"FYPO:0000602"},{"relation_name":"is_a","term_name":"decreased duration of mitotic cell cycle phase","termid":"FYPO:0001070"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0000002","FYPO:0000631","FYPO:0001985","FYPO:0005447"],"is_obsolete":false,"name":"decreased duration of mitotic G1 phase","synonyms":[{"name":"reduced duration of mitotic G1 phase","type":"exact"},{"name":"decreased duration of G1 phase during mitotic cell cycle","type":"exact"},{"name":"decreased duration of mitotic G1 phase during vegetative growth","type":"exact"},{"name":"mitotic cell cycle progression in G1 phase: decreased duration","type":"related"}],"termid":"FYPO:0000603"}


id: GO:0047512
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: (S,S)-butane-2,3-diol + NAD+ = acetoin + H+ + NADH.","definition_xrefs":["EC:1.1.1.76","RHEA:12184"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor","termid":"GO:0016616"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0003674","GO:0016491","GO:0003824"],"is_obsolete":false,"name":"(S,S)-butanediol dehydrogenase activity","secondary_identifiers":["KEGG_REACTION:R03707","MetaCyc:SS-BUTANEDIOL-DEHYDROGENASE-RXN"],"synonyms":[{"name":"(S,S)-butane-2,3-diol:NAD+ oxidoreductase activity","type":"related"},{"name":"L(+)-2,3-butanediol dehydrogenase (L-acetoin forming)","type":"related"},{"name":"L-BDH","type":"related"},{"name":"L-butanediol dehydrogenase activity","type":"related"}],"termid":"GO:0047512"}


id: GO:0021977
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Generation of a long process of a CNS neuron, that carries efferent (outgoing) action potentials from the cell body in the superior colliculus of the midbrain towards target cells in the ventral spinal cord.","definition_xrefs":["GOC:cls","GOC:jid","GO_REF:0000021","GOC:dgh","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"central nervous system projection neuron axonogenesis","termid":"GO:0021952"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"tectospinal tract morphogenesis","termid":"GO:0021977"}


id: GO:1903600
data:
  {"annotated_genes":["SJAG_00691","SJAG_00283"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[88433,91171],"is_not":false,"summary":null,"term":"GO:1903600"}]},"cv_name":"cellular_component","definition":"A protein complex which is capable of glutaminase activity.","definition_xrefs":["PMID:14764090","GO_REF:0000088","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"catalytic complex","termid":"GO:1902494"}],"gene_count":2,"genes_by_uniquename":{"SJAG_00283":null,"SJAG_00691":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0032991","GO:0005575"],"is_obsolete":false,"name":"glutaminase complex","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"Sno1p-Snz1p","type":"exact"}],"termid":"GO:1903600","terms_by_termid":{"GO:1903600":null}}


id: GO:0070106
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The series of molecular signals initiated by interleukin-27 binding to a receptor on the surface of a target cell, and ending with the regulation of a downstream cellular process, e.g. transcription.","definition_xrefs":["GOC:BHF","GOC:signaling","GOC:mah","GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cytokine-mediated signaling pathway","termid":"GO:0019221"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"interleukin-27-mediated signaling pathway","synonyms":[{"name":"IL-27-mediated signaling pathway","type":"exact"},{"name":"IL27RA/IL6ST signaling pathway","type":"exact"},{"name":"interleukin-27-mediated signalling pathway","type":"exact"}],"termid":"GO:0070106"}


id: PBO:0084484
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Meiosis specific DNA helicase; involved in the conversion of double-stranded breaks to later recombination intermediates and in crossover control; catalyzes the unwinding of Holliday junctions; has ssDNA and dsDNA stimulated ATPase activity","termid":"PBO:0084484"}


id: FYPO:0004623
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype in which astral microtubule anchoring at the mitotic spindle pole body does not occur.","definition_xrefs":["PMID:15004232","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal microtubule cytoskeleton organization","termid":"FYPO:0000054"},{"relation_name":"is_a","term_name":"abnormal cell cycle process","termid":"FYPO:0002734"},{"relation_name":"is_a","term_name":"abolished cellular process","termid":"FYPO:0005449"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0000054"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000002","FYPO:0005447","FYPO:0000054","FYPO:0000631"],"is_obsolete":false,"name":"abolished astral microtubule anchoring at mitotic spindle pole body","synonyms":[{"name":"abolished astral microtubule anchoring at mitotic SPB","type":"exact"},{"name":"abolished astral microtubule anchoring at mitotic spindle pole body during mitotic cell cycle","type":"related"},{"name":"abolished astral microtubule anchoring at mitotic spindle pole body during vegetative growth","type":"exact"},{"name":"astral microtubule anchoring at mitotic spindle pole body abolished","type":"exact"}],"termid":"FYPO:0004623"}


id: PBO:0038423
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"A2M antisense RNA 1","termid":"PBO:0038423"}


id: MOD:01714
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively replaces a residue hydroxyl with one of the Applied Biosystems iTRAQ8plex reagent reporter+balance acyloxy groups.","definition_xrefs":["PubMed:18688235"],"direct_ancestors":[{"relation_name":"is_a","term_name":"isotope tagged reagent O-acylated residue","termid":"MOD:01707"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:00649"}],"interesting_parent_ids":["MOD:00649"],"is_obsolete":false,"name":"iTRAQ8plex reporter+balance reagent O-acylated residue","synonyms":[{"name":"(4-methylpiperazin-1-yl)acetyl","type":"exact"}],"termid":"MOD:01714"}


id: PBO:0079750
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uridine-cytidine kinase 1","termid":"PBO:0079750"}


id: PBO:0048587
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"gamma-glutamyltransferase light chain 1","termid":"PBO:0048587"}


id: GO:0070324
data:
  {"annotated_genes":["SJAG_04719"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[96851],"is_not":false,"summary":null,"term":"GO:0070324"}]},"cv_name":"molecular_function","definition":"Binding to thyroxine (T4) or triiodothyronine (T3), tyrosine-based hormones produced by the thyroid gland.","definition_xrefs":["GOC:rph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hormone binding","termid":"GO:0042562"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04719":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005488"}],"interesting_parent_ids":["GO:0005488","GO:0003674"],"is_obsolete":false,"name":"thyroid hormone binding","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"thyroxine binding","type":"narrow"},{"name":"triiodothyronine binding","type":"narrow"}],"termid":"GO:0070324","terms_by_termid":{"GO:0070324":null}}


id: GO:0007141
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A cell cycle process comprising the steps by which a cell progresses through male meiosis I, the first meiotic division in the male germline.","definition_xrefs":["GOC:dph","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"meiosis I","termid":"GO:0007127"},{"relation_name":"is_a","term_name":"male meiotic nuclear division","termid":"GO:0007140"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0007049"},{"rel_name":"is_a","termid":"GO:0140013"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0007049","GO:0140013","GO:0008150"],"is_obsolete":false,"name":"male meiosis I","synonyms":[{"name":"male meiosis I nuclear division","type":"exact"}],"termid":"GO:0007141"}


id: GO:1901979
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of inward rectifier potassium channel activity.","definition_xrefs":["PMID:23449501","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of potassium ion transmembrane transporter activity","termid":"GO:1901016"},{"relation_name":"is_a","term_name":"regulation of cation channel activity","termid":"GO:2001257"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0055085"},{"rel_name":"regulates","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0006810","GO:0055085","GO:0008150"],"is_obsolete":false,"name":"regulation of inward rectifier potassium channel activity","synonyms":[{"name":"regulation of Kir channel activity","type":"exact"}],"termid":"GO:1901979"}


id: GO:0052100
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The process in which single-celled organisms of the same species monitor population density by detecting the concentration of small, diffusible signal molecules.","definition_xrefs":["GOC:mtg_pamgo_17jul06"],"gene_count":0,"genotype_count":0,"name":"obsolete intraspecies quorum sensing (obsolete GO:0052100)","termid":"GO:0052100"}


id: PBO:0047990
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"FSHD region gene 2 family member G, pseudogene","termid":"PBO:0047990"}


id: PBO:0052650
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"keratin 8 pseudogene 18","termid":"PBO:0052650"}


id: MOD:00036
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-aspartic acid residue to (2S,3R)-3-hydroxyaspartic acid.","definition_xrefs":["OMSSA:59","PubMed:6572939","Unimod:35#D","ChEBI:141848","PubMed:6871167","RESID:AA0027","PubMed:8355279"],"direct_ancestors":[{"relation_name":"is_a","term_name":"3-hydroxy-L-aspartic acid","termid":"MOD:01926"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"(2S,3R)-3-hydroxyaspartic acid","synonyms":[{"name":"(2S,3R)-2-amino-3-hydroxybutanedioic acid","type":"exact"},{"name":"(2S,3R)-3-hydroxyaspartic acid","type":"exact"},{"name":"(3R)3HyAsp","type":"exact"},{"name":"2-amino-3-hydroxysuccinic acid","type":"exact"},{"name":"2-azanyl-3-hydroxybutanedioic acid","type":"exact"},{"name":"3-hydroxyaspartic acid","type":"exact"},{"name":"L-erythro-beta-hydroxyaspartic acid","type":"exact"},{"name":"MOD_RES (3R)-3-hydroxyaspartate","type":"exact"},{"name":"Oxidation","type":"related"},{"name":"erythro-beta-hydroxylated L-aspartic acid","type":"exact"},{"name":"hydroxylationd","type":"exact"}],"termid":"MOD:00036"}


id: GO:0004848
data:
  {"annotated_genes":["SJAG_05287"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[87310],"is_not":false,"summary":null,"term":"GO:0004848"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: (S)-ureidoglycolate + H2O + 2 H+ = CO2 + glyoxylate + 2 NH4.","definition_xrefs":["RHEA:19809"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides","termid":"GO:0016811"}],"gene_count":1,"genes_by_uniquename":{"SJAG_05287":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0016810"}],"interesting_parent_ids":["GO:0003824","GO:0016787","GO:0003674","GO:0016810"],"is_obsolete":false,"name":"ureidoglycolate hydrolase activity","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["KEGG_REACTION:R00469","EC:3.5.1.116","MetaCyc:UREIDOGLYCOLATE-HYDROLASE-RXN"],"synonyms":[{"name":"ureidoglycolate amidohydrolase activity","type":"exact"}],"termid":"GO:0004848","terms_by_termid":{"GO:0004848":null}}


id: GO:2000707
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of dense core granule biogenesis.","definition_xrefs":["GOC:obol"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of cellular component biogenesis","termid":"GO:0044089"},{"relation_name":"is_a","term_name":"regulation of dense core granule biogenesis","termid":"GO:2000705"},{"relation_name":"positively_regulates","term_name":"dense core granule biogenesis","termid":"GO:0061110"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0044085"},{"rel_name":"positively_regulates","termid":"GO:0044085"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0044085","GO:0008150"],"is_obsolete":false,"name":"positive regulation of dense core granule biogenesis","termid":"GO:2000707"}


id: RO:0002200
data:
  {"annotation_feature_type":"gene","cv_name":"relationship","definition":"A relationship that holds between a biological entity and a phenotype. Here a phenotype is construed broadly as any kind of quality of an organism part, a collection of these qualities, or a change in quality or qualities (e.g. abnormally increased temperature). The subject of this relationship can be an organism (where the organism has the phenotype, i.e. the qualities inhere in parts of this organism), a genomic entity such as a gene or genotype (if modifications of the gene or the genotype causes the phenotype), or a condition such as a disease (such that if the condition inheres in an organism, then the organism has the phenotype).","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"has_phenotype","termid":"RO:0002200"}


id: PR:Q9Y7L6
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"An AP-2 complex subunit sigma that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PANTHER:PTHR11753:SF6","PRO:DNx","OMA:SCHPO03413"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"AP-2 complex subunit sigma (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC685.04c","secondary_identifiers":["UniProtKB:Q9Y7L6"],"synonyms":[{"name":"Spom972h-AP2S1","type":"exact"},{"name":"adaptin small chain (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"clathrin assembly protein 2 sigma small chain (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"sigma2-adaptin (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:Q9Y7L6"}


id: PBO:0070467
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L5 pseudogene 2","termid":"PBO:0070467"}


id: PBO:0076318
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"synaptopodin 2","termid":"PBO:0076318"}


id: PATO:0001324
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A symmetry quality inhering in a bearer by virtue of the bearer's being symmetric about a plane running from its frontal end to its caudal end (head to tail), and has nearly identical right and left halves.","definition_xrefs":["Wikipedia:http://en.wikipedia.org/wiki/Bilateral_symmetry"],"direct_ancestors":[{"relation_name":"is_a","term_name":"symmetry","termid":"PATO:0000965"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"bilateral symmetry","synonyms":[{"name":"left-right symmetry","type":"exact"}],"termid":"PATO:0001324"}


id: GO:1902291
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any DNA ligation that is involved in cell cycle DNA replication.","definition_xrefs":["GOC:mtg_cell_cycle","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell cycle process","termid":"GO:0022402"},{"relation_name":"is_a","term_name":"DNA-dependent DNA replication DNA ligation","termid":"GO:0051104"},{"relation_name":"part_of","term_name":"cell cycle DNA replication","termid":"GO:0044786"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0007049"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0006259"},{"rel_name":"part_of","termid":"GO:0006260"},{"rel_name":"is_a","termid":"GO:0006259"}],"interesting_parent_ids":["GO:0007049","GO:0006260","GO:0008150","GO:0006259"],"is_obsolete":false,"name":"cell cycle DNA replication DNA ligation","synonyms":[{"name":"DNA ligation involved in cell cycle DNA replication","type":"exact"}],"termid":"GO:1902291"}


id: PBO:0085325
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Phosphatidylinositol:ceramide phosphoinositol transferase; required for sphingolipid synthesis; can mutate to confer aureobasidin A resistance; also known as IPC synthase","termid":"PBO:0085325"}


id: GO:0110150
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that stops, prevents, or reduces the frequency, rate or extent of biomineralization, the formation and deposition of mineral crystals by living organisms.","definition_xrefs":["PMID:22992051"],"gene_count":0,"genotype_count":0,"name":"obsolete negative regulation of biomineralization (obsolete GO:0110150)","synonyms":[{"name":"negative regulation of biomineral formation","type":"narrow"},{"name":"negative regulation of biomineralisation","type":"exact"},{"name":"negative regulation of mineralisation","type":"exact"},{"name":"negative regulation of mineralization","type":"exact"}],"termid":"GO:0110150"}


id: FYPO:0008132
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which calcium signaling is increased.","direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal cellular process during vegetative growth","termid":"FYPO:0001362"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0005447","FYPO:0001320","FYPO:0001985"],"is_obsolete":false,"name":"increased calcium signaling","synonyms":[{"name":"increased calcium signalling","type":"exact"}],"termid":"FYPO:0008132"}


id: PBO:0062218
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 5 subfamily AN member 2 pseudogene","termid":"PBO:0062218"}


id: GO:0072102
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which the anatomical structures of the glomerulus are generated and organized. The glomerulus is a capillary tuft surrounded by Bowman's capsule in nephrons of the vertebrate kidney.","definition_xrefs":["GOC:mtg_kidney_jan10"],"direct_ancestors":[{"relation_name":"is_a","term_name":"anatomical structure morphogenesis","termid":"GO:0009653"},{"relation_name":"part_of","term_name":"glomerulus development","termid":"GO:0032835"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"glomerulus morphogenesis","termid":"GO:0072102"}


id: PR:P33277
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- gap1 gene.","definition_xrefs":["PRO:DNx","UniProtKB:P33277"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"GTPase-activating protein (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC646.12c","synonyms":[{"name":"Spom972h-gap1","type":"exact"},{"name":"ras GTPase-activating protein (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:P33277"}


id: PBO:0069640
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 917, pseudogene","termid":"PBO:0069640"}


id: PBO:0075539
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"speedy/RINGO cell cycle regulator family member E19, pseudogene","termid":"PBO:0075539"}


id: PBO:0088972
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"40S ribosomal protein S30","termid":"PBO:0088972"}


id: PBO:0034446
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_growth_on_okadaic_acid","termid":"PBO:0034446"}


id: PBO:0071758
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein lateral stalk subunit P1 pseudogene 5","termid":"PBO:0071758"}


id: PBO:0052449
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"KLF3 antisense RNA 1","termid":"PBO:0052449"}


id: PBO:0053009
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"lysosomal associated membrane protein family member 5","termid":"PBO:0053009"}


id: GO:0033379
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process in which a protease is maintained in a secretory granule in a T cell and prevented from moving elsewhere.","definition_xrefs":["GOC:tb","GOC:dph","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"maintenance of protein location in T cell secretory granule","termid":"GO:0033377"},{"relation_name":"part_of","term_name":"protease localization to T cell secretory granule","termid":"GO:0033375"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0051179"}],"interesting_parent_ids":["GO:0008150","GO:0051179"],"is_obsolete":false,"name":"maintenance of protease location in T cell secretory granule","synonyms":[{"name":"maintenance of protease localization in T cell secretory granule","type":"related"},{"name":"maintenance of protease localization in T lymphocyte secretory granule","type":"exact"},{"name":"maintenance of protease localization in T-cell secretory granule","type":"exact"},{"name":"maintenance of protease localization in T-lymphocyte secretory granule","type":"exact"}],"termid":"GO:0033379"}


id: GO:0006105
data:
  {"annotated_genes":["SJAG_03574","SJAG_01671","SJAG_00260","SJAG_03434","SJAG_03920","SJAG_03293","SJAG_00674"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[84307,84686,109144,112855],"is_not":false,"summary":null,"term":"GO:0006105"},{"annotations":[87239,82899,83907],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006540"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways involving succinate, also known as butanedioate or ethane dicarboxylate, the dianion of succinic acid. Succinate is an important intermediate in metabolism and a component of the TCA cycle.","definition_xrefs":["ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"dicarboxylic acid metabolic process","termid":"GO:0043648"}],"gene_count":7,"genes_by_uniquename":{"SJAG_00260":null,"SJAG_00674":null,"SJAG_01671":null,"SJAG_03293":null,"SJAG_03434":null,"SJAG_03574":null,"SJAG_03920":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0008150","GO:0044281"],"is_obsolete":false,"name":"succinate metabolic process","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"succinate metabolism","type":"exact"}],"termid":"GO:0006105","terms_by_termid":{"GO:0006105":null,"GO:0006540":null}}


id: GO:0042389
data:
  {"annotated_genes":["SJAG_03943"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[110461],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0009979"}]},"cv_name":"molecular_function","definition":"Catalysis of the introduction of an omega-3 double bond into the fatty acid hydrocarbon chain.","definition_xrefs":["PMID:9037020","GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen","termid":"GO:0016705"}],"gene_count":1,"genes_by_uniquename":{"SJAG_03943":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0016491","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"omega-3 fatty acid desaturase activity","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0042389","terms_by_termid":{"GO:0009979":null}}


id: GO:0050768
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of neurogenesis, the generation of cells within the nervous system.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of cell development","termid":"GO:0010721"},{"relation_name":"is_a","term_name":"regulation of neurogenesis","termid":"GO:0050767"},{"relation_name":"is_a","term_name":"negative regulation of nervous system development","termid":"GO:0051961"},{"relation_name":"negatively_regulates","term_name":"neurogenesis","termid":"GO:0022008"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of neurogenesis","synonyms":[{"name":"down regulation of neurogenesis","type":"exact"},{"name":"down-regulation of neurogenesis","type":"exact"},{"name":"downregulation of neurogenesis","type":"exact"},{"name":"inhibition of neurogenesis","type":"narrow"}],"termid":"GO:0050768"}


id: PBO:0002205
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glutaredoxin Grx2","termid":"PBO:0002205"}


id: GO:0047436
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 2-aryl-2-methylmalonate + H+ = 2-arylpropionate + CO2.","definition_xrefs":["EC:4.1.1.76","RHEA:20513"],"direct_ancestors":[{"relation_name":"is_a","term_name":"carboxy-lyase activity","termid":"GO:0016831"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016829"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016829"],"is_obsolete":false,"name":"arylmalonate decarboxylase activity","secondary_identifiers":["KEGG_REACTION:R05173","MetaCyc:4.1.1.76-RXN"],"synonyms":[{"name":"2-aryl-2-methylmalonate carboxy-lyase (2-arylpropanoate-forming)","type":"related"},{"name":"2-aryl-2-methylmalonate carboxy-lyase activity","type":"related"},{"name":"AMDASE","type":"related"},{"name":"AMDase activity","type":"related"}],"termid":"GO:0047436"}


id: FYPO:0002981
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which occurrence of chromatin binding by a gene product (usually a protein) in a mutant is increased during a cellular response to methyl methanesulfonate. The affected gene product may be encoded by the mutated gene, or by a different gene, and may normally bind DNA, protein, or both in chromatin.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased chromatin binding","termid":"FYPO:0002980"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000702"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0000707"}],"interesting_parent_ids":["FYPO:0000702","FYPO:0000707","FYPO:0001985","FYPO:0000652"],"is_obsolete":false,"name":"increased chromatin binding during cellular response to methyl methanesulfonate","synonyms":[{"name":"increased chromatin binding during cellular response to MMS","type":"exact"},{"name":"increased chromatin binding during cellular response to methyl methanesulphonate","type":"exact"}],"termid":"FYPO:0002981"}


id: PBO:0050154
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"high mobility group box 3 pseudogene 10","termid":"PBO:0050154"}


id: PBO:0091644
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"O-methyltransferase, human COMT catechol homolog 2","termid":"PBO:0091644"}


id: PBO:0073204
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"semaphorin 3D","termid":"PBO:0073204"}


id: PBO:0059607
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MT-ATP6 pseudogene 19","termid":"PBO:0059607"}


id: PBO:0061222
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nucleolar and coiled-body phosphoprotein 1","termid":"PBO:0061222"}


id: GO:0019856
data:
  {"annotated_genes":["SJAG_00694","SJAG_00779","SJAG_00412","SJAG_03164","SJAG_04354","SJAG_05024","SJAG_00444","SJAG_00964","SJAG_00197","SJAG_00392"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[84956,94232,107893,83254,111640,89037,107030,102397,112817],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006207"},{"annotations":[87512],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006223"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of pyrimidine nucleobases, 1,3-diazine, organic nitrogenous bases.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pyrimidine nucleobase metabolic process","termid":"GO:0006206"},{"relation_name":"is_a","term_name":"nucleobase biosynthetic process","termid":"GO:0046112"},{"relation_name":"is_a","term_name":"pyrimidine-containing compound biosynthetic process","termid":"GO:0072528"}],"gene_count":10,"genes_by_uniquename":{"SJAG_00197":null,"SJAG_00392":null,"SJAG_00412":null,"SJAG_00444":null,"SJAG_00694":null,"SJAG_00779":null,"SJAG_00964":null,"SJAG_03164":null,"SJAG_04354":null,"SJAG_05024":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0055086"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0044281","GO:0055086","GO:0008150"],"is_obsolete":false,"name":"pyrimidine nucleobase biosynthetic process","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"pyrimidine base anabolism","type":"exact"},{"name":"pyrimidine base biosynthesis","type":"exact"},{"name":"pyrimidine base biosynthetic process","type":"exact"},{"name":"pyrimidine base formation","type":"exact"},{"name":"pyrimidine base synthesis","type":"exact"}],"termid":"GO:0019856","terms_by_termid":{"GO:0006207":null,"GO:0006223":null}}


id: PR:Q09804
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- urb2 gene.","definition_xrefs":["UniProtKB:Q09804","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nucleolar pre-ribosomal-associated protein 2 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC2G11.02","synonyms":[{"name":"Spom972h-urb2","type":"exact"},{"name":"ribosome biogenesis protein urb2 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:Q09804"}


id: PBO:0004587
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"heat shock protein Hsp104 (predicted)","termid":"PBO:0004587"}


id: GO:0106114
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of mitotic cohesin dsDNA (leading strand) loading.","definition_xrefs":["PMID:29358048"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of mitotic cohesin loading","termid":"GO:1905405"},{"relation_name":"regulates","term_name":"mitotic cohesin dsDNA (leading strand) loading","termid":"GO:0062021"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0007049"}],"interesting_parent_ids":["GO:0007049","GO:0008150"],"is_obsolete":false,"name":"regulation of mitotic cohesin dsDNA (leading strand) loading","termid":"GO:0106114"}


id: PBO:0087106
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Ribosomal protein of the small (40S) subunit; homologous to mammalian ribosomal protein S3A, no bacterial homolog; RPS1B has a paralog, RPS1A, that arose from the whole genome duplication","termid":"PBO:0087106"}


id: PBO:0087918
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Transcription factor required for septum destruction after cytokinesis; part of the RAM network that regulates polarity and morphogenesis; NES phosphorylation by RAM network kinase Cbk1p blocks nuclear exit in mother cells during the M/G1 transition, causing asymmetric localization to daughter cell nuclei, and increased Ace2p activity; phosphorylation by Cdc28p and Pho85p prevents nuclear import during cell cycle phases other than cytokinesis; Spt16p is required for nuclear exclusion during G1","termid":"PBO:0087918"}


id: PBO:0071402
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L31 pseudogene 8","termid":"PBO:0071402"}


id: PBO:0045116
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"doublesex and mab-3 related transcription factor 3","termid":"PBO:0045116"}


id: GO:0016540
data:
  {"annotated_genes":["SJAG_02902","SJAG_03524","SJAG_04398","SJAG_02980"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[88795,90301,92106,100183],"is_not":false,"summary":null,"term":"GO:0016540"}]},"cv_name":"biological_process","definition":"Processing which a protein carries out itself. This involves actions such as the autolytic removal of residues to generate the mature form of the protein.","definition_xrefs":["GOC:ai","PMID:9335337"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein processing","termid":"GO:0016485"}],"gene_count":4,"genes_by_uniquename":{"SJAG_02902":null,"SJAG_02980":null,"SJAG_03524":null,"SJAG_04398":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0051604"},{"rel_name":"part_of","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0051604","GO:0010467","GO:0008150"],"is_obsolete":false,"name":"protein autoprocessing","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0016540","terms_by_termid":{"GO:0016540":null}}


id: PBO:0046295
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"E2F1 mRNA stabilizing lncRNA","termid":"PBO:0046295"}


id: GO:0015101
data:
  {"annotated_genes":["SJAG_04673","SJAG_03808","SJAG_00543","SJAG_02962","SJAG_01589","SJAG_03652","SJAG_02059","SJAG_00763","SJAG_01890","SJAG_00835","SJAG_02152","SJAG_02060","SJAG_04731","SJAG_02125"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[103819],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0015227"},{"annotations":[111228],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0015220"},{"annotations":[96449],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0034216"},{"annotations":[95003],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0015200"},{"annotations":[102972],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0015489"},{"annotations":[85667,114840,85666,113560],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0031925"},{"annotations":[85668,85669,113561,114841],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0031927"},{"annotations":[83744,98407],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0000095"},{"annotations":[105378,102973,106882,105390,105384,113437],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0015606"},{"annotations":[99476],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0090422"},{"annotations":[85673,85672],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0015234"}]},"cv_name":"molecular_function","definition":"Enables the transfer of organic cations from one side of a membrane to the other. Organic cations are atoms or small molecules with a positive charge that contain carbon in covalent linkage.","definition_xrefs":["GOC:ai","GOC:mtg_transport","ISBN:0815340729"],"direct_ancestors":[{"relation_name":"is_a","term_name":"transmembrane transporter activity","termid":"GO:0022857"}],"gene_count":14,"genes_by_uniquename":{"SJAG_00543":null,"SJAG_00763":null,"SJAG_00835":null,"SJAG_01589":null,"SJAG_01890":null,"SJAG_02059":null,"SJAG_02060":null,"SJAG_02125":null,"SJAG_02152":null,"SJAG_02962":null,"SJAG_03652":null,"SJAG_03808":null,"SJAG_04673":null,"SJAG_04731":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0022857"}],"interesting_parent_ids":["GO:0022857","GO:0005215","GO:0003674"],"is_obsolete":false,"name":"organic cation transmembrane transporter activity","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["Reactome:R-HSA-9794270","Reactome:R-HSA-549322","Reactome:R-HSA-549129","Reactome:R-HSA-561054","Reactome:R-HSA-9794523","Reactome:R-HSA-9795207","Reactome:R-HSA-561072","Reactome:R-HSA-549279","Reactome:R-HSA-549304","Reactome:R-HSA-2161500"],"termid":"GO:0015101","terms_by_termid":{"GO:0000095":null,"GO:0015200":null,"GO:0015220":null,"GO:0015227":null,"GO:0015234":null,"GO:0015489":null,"GO:0015606":null,"GO:0031925":null,"GO:0031927":null,"GO:0034216":null,"GO:0090422":null}}


id: GO:0047376
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: all-trans-retinyl palmitate + H2O = all-trans-retinol + H+ + palmitate.","definition_xrefs":["RHEA:13933"],"direct_ancestors":[{"relation_name":"is_a","term_name":"retinyl-palmitate esterase activity","termid":"GO:0050253"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016788"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016788","GO:0003824","GO:0016787","GO:0003674"],"is_obsolete":false,"name":"all-trans-retinyl-palmitate hydrolase, all-trans-retinol forming activity","secondary_identifiers":["Reactome:R-HSA-2404140","KEGG_REACTION:R02368","MetaCyc:3.1.1.64-RXN","Reactome:R-HSA-2429643"],"synonyms":[{"name":"all-trans-retinyl-palmitate acylhydrolase activity","type":"broad"},{"name":"all-trans-retinyl-palmitate hydrolase activity","type":"broad"},{"name":"retinyl-palmitate palmitohydrolase activity","type":"broad"}],"termid":"GO:0047376"}


id: GO:0033778
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 7alpha-hydroxycholest-4-en-3-one + H+ + NADPH + O2 = 7alpha,12alpha-dihydroxycholest-4-en-3-one + H2O + NADP+.","definition_xrefs":["PMID:10051404","RHEA:46752","PMID:1400444"],"direct_ancestors":[{"relation_name":"is_a","term_name":"sterol 12-alpha-hydroxylase activity","termid":"GO:0008397"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016491","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"7alpha-hydroxycholest-4-en-3-one 12alpha-hydroxylase activity","secondary_identifiers":["Reactome:R-HSA-193709","Reactome:R-HSA-193845","KEGG_REACTION:R04826","MetaCyc:1.14.13.95-RXN","Reactome:R-HSA-192157"],"synonyms":[{"name":"7alpha-hydroxy-4-cholesten-3-one 12alpha-monooxygenase activity","type":"related"}],"termid":"GO:0033778"}


id: PBO:0048512
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"GDP dissociation inhibitor 1","termid":"PBO:0048512"}


id: PATO:0000733
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0000733 piloerection value (obsolete PATO:0000733)","termid":"PATO:0000733"}


id: GO:0032510
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The directed movement of substances from endosomes to lysosomes by a pathway in which molecules are sorted into multivesicular bodies, which then fuse with the lysosome.","definition_xrefs":["PMID:12461556","GOC:mah","PMID:16689637"],"direct_ancestors":[{"relation_name":"is_a","term_name":"endosome to lysosome transport","termid":"GO:0008333"},{"relation_name":"is_a","term_name":"endosome transport via multivesicular body sorting pathway","termid":"GO:0032509"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0016192"},{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006810","GO:0051179","GO:0008150","GO:0016192"],"is_obsolete":false,"name":"endosome to lysosome transport via multivesicular body sorting pathway","synonyms":[{"name":"endosome to lysosome transport via MVB sorting pathway","type":"exact"}],"termid":"GO:0032510"}


id: GO:0106175
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The lipid bylayer surrounding a phagolysosome.","definition_xrefs":["PMID:29471269","GOC:pde"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cytoplasmic vesicle membrane","termid":"GO:0030659"},{"relation_name":"part_of","term_name":"phagolysosome","termid":"GO:0032010"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0031410"},{"rel_name":"part_of","termid":"GO:0005773"},{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005737","GO:0005575","GO:0005773","GO:0031410"],"is_obsolete":false,"name":"phagolysosome vesicle membrane","termid":"GO:0106175"}


id: PBO:0077863
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tropomyosin 3 pseudogene 4","termid":"PBO:0077863"}


id: PBO:0028800
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_chromatin_binding_at_mating-type_region_replication_fork_barrier","termid":"PBO:0028800"}


id: GO:0035396
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate, or extent of production of chemokine (C-X-C motif) ligand 9.","definition_xrefs":["GOC:bf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of chemokine production","termid":"GO:0032722"},{"relation_name":"is_a","term_name":"regulation of chemokine (C-X-C motif) ligand 9 production","termid":"GO:0035394"},{"relation_name":"positively_regulates","term_name":"chemokine (C-X-C motif) ligand 9 production","termid":"GO:0035393"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"positively_regulates","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0010467","GO:0008150"],"is_obsolete":false,"name":"positive regulation of chemokine (C-X-C motif) ligand 9 production","synonyms":[{"name":"positive regulation of CXCL9 production","type":"exact"},{"name":"positive regulation of MIG production","type":"exact"}],"termid":"GO:0035396"}


id: PBO:0091101
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CENP-W ortholog","termid":"PBO:0091101"}


id: GO:0071792
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving bacillithiol, the alpha-anomeric glycoside of L-cysteinyl-D-glucosamine with L-malic acid. Bacillithiol, produced widely in the Firmicutes and sporadically in other bacterial lineages, is a low-molecular-weight thiol analogous to mycothiol in the Actinomycetes and glutathione in many species.","definition_xrefs":["PMID:20308541","GOC:dh"],"direct_ancestors":[{"relation_name":"is_a","term_name":"sulfur compound metabolic process","termid":"GO:0006790"},{"relation_name":"is_a","term_name":"glycoside metabolic process","termid":"GO:0016137"},{"relation_name":"is_a","term_name":"carboxylic acid metabolic process","termid":"GO:0019752"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006790"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0008150","GO:0006790","GO:0044281"],"is_obsolete":false,"name":"bacillithiol metabolic process","synonyms":[{"name":"bacillithiol metabolism","type":"exact"}],"termid":"GO:0071792"}


id: PBO:0063541
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"phosphatidylethanolamine binding protein 1","termid":"PBO:0063541"}


id: PBO:0061449
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nuclear receptor subfamily 4 group A member 1","termid":"PBO:0061449"}


id: GO:0031234
data:
  {"annotated_genes":["SJAG_03081","SJAG_02233","SJAG_04266","SJAG_04026","SJAG_02605","SJAG_02444"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[106484],"is_not":false,"summary":null,"term":"GO:0031234"},{"annotations":[109879,89857,104936,102371,103024],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0005834"}]},"cv_name":"cellular_component","definition":"The component of a plasma membrane consisting of gene products and protein complexes that are loosely bound to its cytoplasmic surface, but not integrated into the hydrophobic region.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"extrinsic component of plasma membrane","termid":"GO:0019897"},{"relation_name":"part_of","term_name":"cytoplasmic side of plasma membrane","termid":"GO:0009898"}],"gene_count":6,"genes_by_uniquename":{"SJAG_02233":null,"SJAG_02444":null,"SJAG_02605":null,"SJAG_03081":null,"SJAG_04026":null,"SJAG_04266":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005886"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575","GO:0005886"],"is_obsolete":false,"name":"extrinsic component of cytoplasmic side of plasma membrane","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"extrinsic to cytoplasmic side of plasma membrane","type":"narrow"},{"name":"extrinsic to internal leaflet of plasma membrane","type":"exact"},{"name":"extrinsic to internal side of plasma membrane","type":"exact"}],"termid":"GO:0031234","terms_by_termid":{"GO:0005834":null,"GO:0031234":null}}


id: PBO:0054504
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1904","termid":"PBO:0054504"}


id: PBO:0047559
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"fibroblast growth factor 13","termid":"PBO:0047559"}


id: GO:0019181
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: a halohydrin = an epoxide + a hydrogen halide.","definition_xrefs":["PMID:8017917"],"direct_ancestors":[{"relation_name":"is_a","term_name":"carbon-halide lyase activity","termid":"GO:0016848"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016829"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016829","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"halohydrin hydrogen-halide-lyase activity","termid":"GO:0019181"}


id: PBO:0089655
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosome biogenesis protein Brx1","termid":"PBO:0089655"}


id: PBO:0083948
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Gamma subunit of the F1 sector of mitochondrial F1F0 ATP synthase; F1F0 ATP synthase is a large, evolutionarily conserved enzyme complex required for ATP synthesis","termid":"PBO:0083948"}


id: PBO:0026690
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-resistance_to_tamoxifen","termid":"PBO:0026690"}


id: PATO:0000930
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0000930 light_quality sensitivity (obsolete PATO:0000930)","termid":"PATO:0000930"}


id: GO:0016531
data:
  {"annotated_genes":["SJAG_04403","SJAG_03231","SJAG_00449","SJAG_03296","SJAG_04553"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[84525,88748,97922,100559,103382],"is_not":false,"summary":null,"term":"GO:0016531"},{"annotations":[88750],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0016532"}]},"cv_name":"molecular_function","definition":"Directly binding to and delivering copper ions to a target protein.","definition_xrefs":["PMID:10790544","PMID:11739376"],"direct_ancestors":[{"relation_name":"is_a","term_name":"metallochaperone activity","termid":"GO:0016530"}],"gene_count":5,"genes_by_uniquename":{"SJAG_00449":null,"SJAG_03231":null,"SJAG_03296":null,"SJAG_04403":null,"SJAG_04553":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0140104"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0140104"],"is_obsolete":false,"name":"copper chaperone activity","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0016531","terms_by_termid":{"GO:0016531":null,"GO:0016532":null}}


id: GO:0000722
data:
  {"annotated_genes":["SJAG_05105","SJAG_00640","SJAG_06642","SJAG_05353","SJAG_01677","SJAG_05173","SJAG_06597","SJAG_02079"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[84674,88335,88336,88337,88338,91864,107705,108949,108950,108951,108952,108953],"is_not":false,"summary":null,"term":"GO:0000722"}]},"cv_name":"biological_process","definition":"Any recombinational process that contributes to the maintenance of proper telomeric length.","definition_xrefs":["GOC:elh","PMID:11850777"],"direct_ancestors":[{"relation_name":"is_a","term_name":"telomere maintenance","termid":"GO:0000723"},{"relation_name":"is_a","term_name":"mitotic recombination","termid":"GO:0006312"}],"gene_count":8,"genes_by_uniquename":{"SJAG_00640":null,"SJAG_01677":null,"SJAG_02079":null,"SJAG_05105":null,"SJAG_05173":null,"SJAG_05353":null,"SJAG_06597":null,"SJAG_06642":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006259"},{"rel_name":"is_a","termid":"GO:0006310"},{"rel_name":"is_a","termid":"GO:0032200"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0032200","GO:0006310","GO:0006259","GO:0008150"],"is_obsolete":false,"name":"telomere maintenance via recombination","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"telomerase-independent telomere maintenance","type":"related"}],"termid":"GO:0000722","terms_by_termid":{"GO:0000722":null}}


id: PBO:0059653
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MT-CO1 pseudogene 19","termid":"PBO:0059653"}


id: PBO:0078551
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tripartite motif containing 41","termid":"PBO:0078551"}


id: PBO:0011435
data:
  {"annotation_feature_type":"gene","cv_name":"complementation","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"functionally complemented by H. sapiens SSB","termid":"PBO:0011435"}


id: GO:0071626
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process of biting and mashing food with the teeth prior to swallowing.","definition_xrefs":["GOC:gvg"],"direct_ancestors":[{"relation_name":"is_a","term_name":"digestive system process","termid":"GO:0022600"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"mastication","synonyms":[{"name":"chewing","type":"exact"}],"termid":"GO:0071626"}


id: GO:0038063
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The series of molecular signals initiated by collagen binding to its receptor on the surface of a target cell where the receptor possesses tyrosine kinase activity, and ending with the regulation of a downstream cellular process, e.g. transcription.","definition_xrefs":["PMID:16626936","GOC:bf","GOC:uh","PMID:15888913"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell surface receptor protein tyrosine kinase signaling pathway","termid":"GO:0007169"},{"relation_name":"is_a","term_name":"collagen-activated signaling pathway","termid":"GO:0038065"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"collagen-activated tyrosine kinase receptor signaling pathway","synonyms":[{"name":"DDR signaling pathway","type":"narrow"},{"name":"collagen-activated RTK signaling pathway","type":"exact"},{"name":"collagen-activated tyrosine kinase receptor signalling pathway","type":"exact"},{"name":"discoidin domain receptor signaling pathway","type":"narrow"}],"termid":"GO:0038063"}


id: GO:0007350
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The hierarchical steps resulting in the progressive subdivision of the anterior/posterior axis of the embryo.","definition_xrefs":["ISBN:0879694238"],"direct_ancestors":[{"relation_name":"is_a","term_name":"embryonic pattern specification","termid":"GO:0009880"},{"relation_name":"is_a","term_name":"segmentation","termid":"GO:0035282"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"blastoderm segmentation","termid":"GO:0007350"}


id: SO:0001996
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"Region of intronic sequence within 10 bases of an exon.","definition_xrefs":["SANGER:am"],"direct_ancestors":[{"relation_name":"is_a","term_name":"intron_domain","termid":"SO:0001014"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"extended_intronic_splice_region","synonyms":[{"name":"extended intronic splice region ","type":"exact"}],"termid":"SO:0001996"}


id: PBO:0064023
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"piwi-interacting RNA cluster 57","termid":"PBO:0064023"}


id: PBO:0000662
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ubiquinone biosynthesis protein Coq4 (predicted)","termid":"PBO:0000662"}


id: PBO:0089189
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"multifunctional proteasome assembly, lid subcomplex subunit Rpn15/Dss1","termid":"PBO:0089189"}


id: FYPO:0007576
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which vacuole fission, i.e. the division of one vacuole into two or more separate vacuoles, is abnormal.","definition_xrefs":["PomBase:mah","GO:0140572"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal vacuole organization during vegetative growth","termid":"FYPO:0000812"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0001985","FYPO:0000002","FYPO:0005447"],"is_obsolete":false,"name":"abnormal vacuole fission","synonyms":[{"name":"abnormal vacuole division","type":"exact"},{"name":"abnormal vacuole fission during mitotic cell cycle","type":"related"},{"name":"abnormal vacuole fission during vegetative growth","type":"exact"}],"termid":"FYPO:0007576"}


id: GO:0042436
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of compounds that contain an indole (2,3-benzopyrrole) skeleton.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"aromatic compound catabolic process","termid":"GO:0019439"},{"relation_name":"is_a","term_name":"indole-containing compound metabolic process","termid":"GO:0042430"},{"relation_name":"is_a","term_name":"cellular nitrogen compound catabolic process","termid":"GO:0044270"},{"relation_name":"is_a","term_name":"heterocycle catabolic process","termid":"GO:0046700"},{"relation_name":"is_a","term_name":"organic cyclic compound catabolic process","termid":"GO:1901361"},{"relation_name":"is_a","term_name":"organonitrogen compound catabolic process","termid":"GO:1901565"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044248"}],"interesting_parent_ids":["GO:0008150","GO:0044248"],"is_obsolete":false,"name":"indole-containing compound catabolic process","synonyms":[{"name":"indole derivative catabolic process","type":"exact"},{"name":"indole derivative catabolism","type":"exact"},{"name":"indole-containing compound breakdown","type":"exact"},{"name":"indole-containing compound catabolism","type":"exact"},{"name":"indole-containing compound degradation","type":"exact"}],"termid":"GO:0042436"}


id: GO:1904047
data:
  {"annotated_genes":["SJAG_03755","SJAG_01269"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[87834,93568],"is_not":false,"summary":null,"term":"GO:1904047"}]},"cv_name":"molecular_function","definition":"Binding to S-adenosyl-L-methionine.","definition_xrefs":["GOC:TermGenie","GO_REF:0000067","GOC:hal","PMID:22985361","GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cation binding","termid":"GO:0043169"},{"relation_name":"is_a","term_name":"sulfur compound binding","termid":"GO:1901681"}],"gene_count":2,"genes_by_uniquename":{"SJAG_01269":null,"SJAG_03755":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0005488","GO:0003674"],"is_obsolete":false,"name":"S-adenosyl-L-methionine binding","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["GO:0070283","Reactome:R-HSA-947535"],"synonyms":[{"name":"radical SAM enzyme activity","type":"narrow"}],"termid":"GO:1904047","terms_by_termid":{"GO:1904047":null}}


id: PBO:0075306
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SOCS3 divergent transcript","termid":"PBO:0075306"}


id: GO:0046366
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of allose, allo-hexose, an aldohexose similar to glucose, differing only in the configuration of the hydroxyl group of C-3.","definition_xrefs":["ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"allose metabolic process","termid":"GO:0019313"},{"relation_name":"is_a","term_name":"hexose biosynthetic process","termid":"GO:0019319"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005975"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0005975","GO:0008150","GO:0044281"],"is_obsolete":false,"name":"allose biosynthetic process","synonyms":[{"name":"allose anabolism","type":"exact"},{"name":"allose biosynthesis","type":"exact"},{"name":"allose formation","type":"exact"},{"name":"allose synthesis","type":"exact"}],"termid":"GO:0046366"}


id: GO:0008876
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: D-glucose + ubiquinone = D-glucono-1,5-lactone + ubiquinol.","definition_xrefs":["EC:1.1.5.2"],"direct_ancestors":[{"relation_name":"is_a","term_name":"glucose dehydrogenase activity","termid":"GO:0004344"},{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor","termid":"GO:0016901"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016491","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"quinoprotein glucose dehydrogenase activity","secondary_identifiers":["KEGG_REACTION:R00305","MetaCyc:RXN0-6373","RHEA:22152"],"synonyms":[{"name":"D-glucose:(pyrroloquinoline-quinone) 1-oxidoreductase activity","type":"related"},{"name":"D-glucose:ubiquinone oxidoreductase activity","type":"related"},{"name":"glucose dehydrogenase (PQQ-dependent) activity","type":"related"},{"name":"glucose dehydrogenase (pyrroloquinoline-quinone) activity","type":"exact"},{"name":"quinoprotein D-glucose dehydrogenase activity","type":"related"}],"termid":"GO:0008876"}


id: PBO:0057181
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 335","termid":"PBO:0057181"}


id: PATO:0000623
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A quality inhering in a bearer by virtue of the bearer's protruding or projecting from the body.","definition_xrefs":["sdvc:sdvc"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protruding","termid":"PATO:0001598"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"exserted","synonyms":[{"name":"prolapse","type":"related"},{"name":"prolapsed","type":"related"}],"termid":"PATO:0000623"}


id: PBO:0066496
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ret finger protein like 4A pseudogene 7","termid":"PBO:0066496"}


id: PBO:0052537
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"kallikrein related peptidase 10","termid":"PBO:0052537"}


id: GO:1905543
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A protein complex that binds interleukin-15 (IL-15) and that consists of, at a minimum, an interleukin, an alpha, beta and gamma chain as well as optional additional kinase subunits. The alpha chain is unique to binds IL-15 while it shares the beta chain with the IL-2 receptor and the cytokine receptor common gamma chain with multiple interleukin receptors.","definition_xrefs":["PMID:23104097","GO_REF:0000088","GOC:bhm","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"receptor complex","termid":"GO:0043235"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0032991","GO:0005575"],"is_obsolete":false,"name":"interleukin-15 receptor complex","synonyms":[{"name":"IL-15 receptor complex","type":"exact"},{"name":"IL-15-receptor complex","type":"exact"},{"name":"IL15 receptor complex","type":"exact"},{"name":"IL15-receptor complex","type":"exact"},{"name":"interleukin-15-receptor complex","type":"exact"}],"termid":"GO:1905543"}


id: PBO:0076337
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"synaptotagmin 5","termid":"PBO:0076337"}


id: GO:0048786
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A specialized region of the plasma membrane and cell cortex of a presynaptic neuron; encompasses a region of the plasma membrane where synaptic vesicles dock and fuse, and a specialized cortical cytoskeletal matrix.","definition_xrefs":["GOC:jid","GOC:pr","GOC:dl","PMID:3152289","GOC:dh","GOC:ef"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular anatomical entity","termid":"GO:0110165"},{"relation_name":"part_of","term_name":"presynapse","termid":"GO:0098793"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"presynaptic active zone","secondary_identifiers":["NIF_Subcellular:sao792027222"],"synonyms":[{"name":"pre-synaptic active zone","type":"exact"},{"name":"pre-synaptic active zone component","type":"narrow"},{"name":"presynaptic specialization","type":"exact"}],"termid":"GO:0048786"}


id: GO:1900804
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The chemical reactions and pathways resulting in the breakdown of brevianamide F.","definition_xrefs":["GOC:di","GOC:TermGenie"],"gene_count":0,"genotype_count":0,"name":"obsolete brevianamide F catabolic process (obsolete GO:1900804)","synonyms":[{"name":"L-prolyl-L-tryptophan anhydride breakdown","type":"related"},{"name":"L-prolyl-L-tryptophan anhydride catabolic process","type":"related"},{"name":"L-prolyl-L-tryptophan anhydride catabolism","type":"related"},{"name":"L-prolyl-L-tryptophan anhydride degradation","type":"related"},{"name":"L-tryptophyl-L-proline cyclic anhydride breakdown","type":"related"},{"name":"L-tryptophyl-L-proline cyclic anhydride catabolic process","type":"related"},{"name":"L-tryptophyl-L-proline cyclic anhydride catabolism","type":"related"},{"name":"L-tryptophyl-L-proline cyclic anhydride degradation","type":"related"},{"name":"brevianamide F breakdown","type":"exact"},{"name":"brevianamide F catabolism","type":"exact"},{"name":"brevianamide F degradation","type":"exact"},{"name":"cyclo-(Trp-Pro) breakdown","type":"related"},{"name":"cyclo-(Trp-Pro) catabolic process","type":"related"},{"name":"cyclo-(Trp-Pro) catabolism","type":"related"},{"name":"cyclo-(Trp-Pro) degradation","type":"related"},{"name":"cyclo-L-Trp-L-Pro breakdown","type":"related"},{"name":"cyclo-L-Trp-L-Pro catabolic process","type":"related"},{"name":"cyclo-L-Trp-L-Pro catabolism","type":"related"},{"name":"cyclo-L-Trp-L-Pro degradation","type":"related"},{"name":"cyclo-L-tryptophanyl-L-proline breakdown","type":"related"},{"name":"cyclo-L-tryptophanyl-L-proline catabolic process","type":"related"},{"name":"cyclo-L-tryptophanyl-L-proline catabolism","type":"related"},{"name":"cyclo-L-tryptophanyl-L-proline degradation","type":"related"},{"name":"tryptophan-proline diketopiperazine breakdown","type":"related"},{"name":"tryptophan-proline diketopiperazine catabolic process","type":"related"},{"name":"tryptophan-proline diketopiperazine catabolism","type":"related"},{"name":"tryptophan-proline diketopiperazine degradation","type":"related"}],"termid":"GO:1900804"}


id: SO:0000329
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"An mRNA with a plus 2 frameshift.","definition_xrefs":["SO:xp"],"direct_ancestors":[{"relation_name":"has_quality","term_name":"plus_2_framshift","termid":"SO:0000869"},{"relation_name":"is_a","term_name":"mRNA_with_frameshift","termid":"SO:0000108"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mRNA_with_plus_2_frameshift","synonyms":[{"name":"mRNA with plus 2 frameshift","type":"exact"}],"termid":"SO:0000329"}


id: GO:1905509
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process in which a protein is transported to, or maintained in, a location within an interphase microtubule organizing center.","definition_xrefs":["GOC:TermGenie","GO_REF:0000087","PMID:19001497"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein localization to microtubule organizing center","termid":"GO:1905508"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0051179"}],"interesting_parent_ids":["GO:0008150","GO:0051179"],"is_obsolete":false,"name":"protein localization to interphase microtubule organizing center","synonyms":[{"name":"protein localisation in interphase microtubule organizing center","type":"exact"},{"name":"protein localisation to interphase microtubule organizing center","type":"exact"},{"name":"protein localization in interphase microtubule organizing center","type":"exact"}],"termid":"GO:1905509"}


id: PBO:0088930
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sec14 cytosolic factor family, phospholipid-intermembrane transfer protein Csr1","termid":"PBO:0088930"}


id: PBO:0074484
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SET and MYND domain containing 3","termid":"PBO:0074484"}


id: PBO:0041341
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chromosome 3 open reading frame 38","termid":"PBO:0041341"}


id: PBO:0073082
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"succinate dehydrogenase complex assembly factor 2","termid":"PBO:0073082"}


id: PBO:0072857
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sarcosine dehydrogenase","termid":"PBO:0072857"}


id: PBO:0011484
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Golgi Dsc E3 ligase complex subunit Dsc1","termid":"PBO:0011484"}


id: PBO:0074780
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nucleolar RNA, C/D box 3 pseudogene 3","termid":"PBO:0074780"}


id: GO:0000094
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. (Was not defined before being made obsolete).","definition_xrefs":["GOC:go_curators"],"gene_count":0,"genotype_count":0,"name":"obsolete septin assembly and septum formation (obsolete GO:0000094)","synonyms":[{"name":"septin assembly and septum formation","type":"exact"}],"termid":"GO:0000094"}


id: PBO:0061183
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nuclear-encoded mitochondrial tRNA-Gln (TTG) 13-1","termid":"PBO:0061183"}


id: FYPO:0001731
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of L-glutamate measured in the vacuole is higher than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased cellular glutamate level","termid":"FYPO:0001568"},{"relation_name":"is_a","term_name":"increased level of substance in vacuole","termid":"FYPO:0001730"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001320","FYPO:0001985"],"is_obsolete":false,"name":"increased vacuolar glutamate level","synonyms":[{"name":"increased level of glutamate in vacuole","type":"exact"},{"name":"increased vacuolar L-glutamate level","type":"exact"},{"name":"increased vacuolar glutamate level during mitotic cell cycle","type":"related"},{"name":"increased vacuolar glutamate level during vegetative growth","type":"exact"},{"name":"increased vacuolar glutamic acid level","type":"related"}],"termid":"FYPO:0001731"}


id: GO:1902520
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a doxorubicin stimulus.","definition_xrefs":["GOC:dw","GOC:TermGenie","PMID:23648065"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to organic cyclic compound","termid":"GO:0014070"},{"relation_name":"is_a","term_name":"response to alcohol","termid":"GO:0097305"},{"relation_name":"is_a","term_name":"response to ketone","termid":"GO:1901654"},{"relation_name":"is_a","term_name":"response to nitrogen compound","termid":"GO:1901698"},{"relation_name":"is_a","term_name":"response to glycoside","termid":"GO:1903416"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"response to doxorubicin","termid":"GO:1902520"}


id: SO:0001484
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"An X element combinatorial repeat is a repeat region located between the X element and the telomere or adjacent Y' element.","direct_ancestors":[{"relation_name":"is_a","term_name":"repeat_region","termid":"SO:0000657"},{"relation_name":"part_of","term_name":"telomere","termid":"SO:0000624"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"X_element_combinatorial_repeat","synonyms":[{"name":"INSDC_feature:repeat_region","type":"broad"},{"name":"INSDC_qualifier:x_element_combinatorial_repeat","type":"exact"},{"name":"X element combinatorial repeat","type":"exact"}],"termid":"SO:0001484"}


id: GO:0000347
data:
  {"annotated_genes":["SJAG_04202","SJAG_00992","SJAG_04310","SJAG_04536","SJAG_05328","SJAG_04115"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[87736,112399,97654,107073,112137,115012],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0000445"}]},"cv_name":"cellular_component","definition":"The THO complex is a nuclear complex that is required for transcription elongation through genes containing tandemly repeated DNA sequences. The THO complex is also part of the TREX (TRanscription EXport) complex that is involved in coupling transcription to export of mRNAs to the cytoplasm. In S. cerevisiae, it is composed of four subunits: Hpr1p, Tho2p, Thp1p, and Mft1p, while the human complex is composed of 7 subunits.","definition_xrefs":["PMID:16983072","GOC:krc","PMID:11979277","PMID:11060033"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nuclear protein-containing complex","termid":"GO:0140513"}],"gene_count":6,"genes_by_uniquename":{"SJAG_00992":null,"SJAG_04115":null,"SJAG_04202":null,"SJAG_04310":null,"SJAG_04536":null,"SJAG_05328":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005634"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0032991","GO:0005575","GO:0005634"],"is_obsolete":false,"name":"THO complex","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0000347","terms_by_termid":{"GO:0000445":null}}


id: PBO:0088036
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Ubiquitin-binding protein of unknown function; contains one WD40 repeat in a beta-propeller fold; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm; homolog of human WDR48/UAF1, which is involved in regulating the Fanconi anemia pathway; deletion mutant is sensitive to various chemicals including phenanthroline, sanguinarine, and nordihydroguaiaretic acid","termid":"PBO:0088036"}


id: PBO:0050939
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"interferon alpha 10","termid":"PBO:0050939"}


id: GO:0043708
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The attachment of a cell to a solid substrate, via cell adhesion molecules, contributing to the formation of a biofilm.","definition_xrefs":["GOC:jl","GOC:tb","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell-substrate adhesion","termid":"GO:0031589"},{"relation_name":"part_of","term_name":"submerged biofilm formation","termid":"GO:0090605"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0007155"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0007155"],"is_obsolete":false,"name":"cell adhesion involved in biofilm formation","synonyms":[{"name":"cell adhesion during biofilm formation","type":"related"}],"termid":"GO:0043708"}


id: PBO:0004363
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"methyltransferase N2227 family","termid":"PBO:0004363"}


id: GO:2000826
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of heart morphogenesis.","definition_xrefs":["GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of animal organ morphogenesis","termid":"GO:2000027"},{"relation_name":"regulates","term_name":"heart morphogenesis","termid":"GO:0003007"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of heart morphogenesis","synonyms":[{"name":"regulation of cardiac morphogenesis","type":"related"}],"termid":"GO:2000826"}


id: FYPO:0004408
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A phenotype in which vegetative cell population growth is normal (i.e. indistinguishable from wild type) in a medium containing triplatin tetranitrate (also called BBR 3464).","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal vegetative cell population growth","termid":"FYPO:0001357"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000139"},{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0002058"},{"rel_name":"is_a","termid":"FYPO:0002060"},{"rel_name":"is_a","termid":"FYPO:0000003"},{"rel_name":"is_a","termid":"FYPO:0002057"}],"interesting_parent_ids":["FYPO:0000257","FYPO:0002058","FYPO:0000139","FYPO:0000003","FYPO:0002060","FYPO:0002057"],"is_obsolete":false,"name":"normal growth on triplatin tetranitrate","synonyms":[{"name":"normal cell population growth in presence of triplatin tetranitrate","type":"exact"},{"name":"normal cell population growth on BBR 3464","type":"exact"},{"name":"normal cell population growth on triplatin tetranitrate","type":"exact"},{"name":"normal cellular response to triplatin tetranitrate","type":"related"},{"name":"normal vegetative cell population growth on triplatin tetranitrate","type":"exact"}],"termid":"FYPO:0004408"}


id: PBO:0083791
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Essential protein involved in vesicle-mediated ER to Golgi transport; binds membranes and functions during vesicle docking to the Golgi; required for assembly of the ER-to-Golgi SNARE complex","termid":"PBO:0083791"}


id: PBO:0056204
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MAGE family member A12","termid":"PBO:0056204"}


id: PBO:0001692
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SnoRNA (predicted)","termid":"PBO:0001692"}


id: PBO:0049859
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"HECT, C2 and WW domain containing E3 ubiquitin protein ligase 2","termid":"PBO:0049859"}


id: PBO:0002824
data:
  {"annotation_feature_type":"gene","cv_name":"DNA_binding_specificity","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"binds HSE 5'-NGAANNTTCNNGAAN-3'","termid":"PBO:0002824"}


id: PATO:0002433
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A surface feature shape marked by large amounts of relief, often with multiple ridges and grooves in close association. Topographically complex.","definition_xrefs":["PATOC:AD"],"direct_ancestors":[{"relation_name":"is_a","term_name":"surface feature shape","termid":"PATO:0001925"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sculpted surface","termid":"PATO:0002433"}


id: GO:0051018
data:
  {"annotated_genes":["SJAG_01245"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[70668],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0034236"}]},"cv_name":"molecular_function","definition":"Binding to a protein kinase A.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein binding","termid":"GO:0005515"}],"gene_count":1,"genes_by_uniquename":{"SJAG_01245":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0005515"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0005515","GO:0003674","GO:0005488"],"is_obsolete":false,"name":"protein kinase A binding","references_by_uniquename":{"GO_REF:0000033":null},"synonyms":[{"name":"PKA binding","type":"exact"},{"name":"protein kinase A anchoring activity","type":"related"}],"termid":"GO:0051018","terms_by_termid":{"GO:0034236":null}}


id: GO:0070885
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of the calcineurin-NFAT signaling cascade.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of calcineurin-NFAT signaling cascade","termid":"GO:0070884"},{"relation_name":"is_a","term_name":"negative regulation of calcineurin-mediated signaling","termid":"GO:0106057"},{"relation_name":"negatively_regulates","term_name":"calcineurin-NFAT signaling cascade","termid":"GO:0033173"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0023052"},{"rel_name":"negatively_regulates","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"negative regulation of calcineurin-NFAT signaling cascade","secondary_identifiers":["GO:0051534"],"synonyms":[{"name":"down regulation of calcineurin-NFAT signaling cascade","type":"exact"},{"name":"down-regulation of calcineurin-NFAT signaling cascade","type":"exact"},{"name":"downregulation of calcineurin-NFAT signaling cascade","type":"exact"},{"name":"inhibition of NFAT protein import into nucleus","type":"narrow"},{"name":"inhibition of calcineurin-NFAT signaling cascade","type":"narrow"},{"name":"negative regulation of NFAT protein import into nucleus","type":"narrow"},{"name":"negative regulation of calcineurin-NFAT signaling pathway","type":"related"},{"name":"negative regulation of calcineurin-NFAT signalling cascade","type":"exact"},{"name":"termination of calcineurin-NFAT signaling cascade","type":"narrow"}],"termid":"GO:0070885"}


id: GO:0051034
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Enables the transfer of tRNA, transfer ribonucleic acid, from one side of a membrane to the other.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"RNA transmembrane transporter activity","termid":"GO:0051033"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005215"}],"interesting_parent_ids":["GO:0022857","GO:0005215","GO:0003674"],"is_obsolete":false,"name":"tRNA transmembrane transporter activity","termid":"GO:0051034"}


id: PBO:0051162
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"immunoglobulin heavy variable 3-43","termid":"PBO:0051162"}


id: FYPO:0001692
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A phenotype observed in the vegetative growth phase of the life cycle in which cells show increased sensitivity to purvalanol A. Cells stop growing (and may die) at a concentration of purvalanol A that allows wild type cells to grow.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased sensitivity to chemical during vegetative growth","termid":"FYPO:0000127"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0002683"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000139"},{"rel_name":"is_a","termid":"FYPO:0000003"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0000139","FYPO:0002683","FYPO:0000003","FYPO:0001985"],"is_obsolete":false,"name":"sensitive to purvalanol A","synonyms":[{"name":"hypersensitive to purvalanol A","type":"exact"},{"name":"sensitive to purvalanol A during mitotic cell cycle","type":"related"},{"name":"sensitive to purvalanol A during vegetative growth","type":"exact"}],"termid":"FYPO:0001692"}


id: PBO:0074704
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nucleolar RNA, H/ACA box 71D","termid":"PBO:0074704"}


id: PBO:0058028
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 3977","termid":"PBO:0058028"}


id: PBO:0060392
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitotic spindle organizing protein 1 pseudogene 2","termid":"PBO:0060392"}


id: PBO:0061808
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"odr-4 GPCR localization factor homolog","termid":"PBO:0061808"}


id: PBO:0027042
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-resistance_to_allyl_alcohol","termid":"PBO:0027042"}


id: PBO:0027827
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_negative_regulation_of_transcription_during_G0_phase","termid":"PBO:0027827"}


id: GO:0019633
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of shikimate, (3R,4S,5R)--3,4,5-trihydroxycyclohex-1-ene-1-carboxylate, the anion of shikimic acid.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"shikimate metabolic process","termid":"GO:0019632"},{"relation_name":"is_a","term_name":"monocarboxylic acid catabolic process","termid":"GO:0072329"},{"relation_name":"is_a","term_name":"organic hydroxy compound catabolic process","termid":"GO:1901616"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0044248"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0044248","GO:0044281","GO:0008150"],"is_obsolete":false,"name":"shikimate catabolic process","secondary_identifiers":["MetaCyc:SHIKIMATEDEG-PWY"],"synonyms":[{"name":"shikimate breakdown","type":"exact"},{"name":"shikimate catabolism","type":"exact"},{"name":"shikimate degradation","type":"exact"}],"termid":"GO:0019633"}


id: PBO:0064148
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"plakophilin 1","termid":"PBO:0064148"}


id: PBO:0083580
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Dubious open reading frame; unlikely to encode a functional protein, based on available experimental and comparative sequence data; substantially overlaps YMR295C; deletion causes sensitivity to unfolded protein response-inducing agents","termid":"PBO:0083580"}


id: GO:0032645
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate, or extent of granulocyte macrophage colony-stimulating factor production.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of cytokine production","termid":"GO:0001817"},{"relation_name":"is_a","term_name":"regulation of protein metabolic process","termid":"GO:0051246"},{"relation_name":"regulates","term_name":"granulocyte macrophage colony-stimulating factor production","termid":"GO:0032604"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0010467","GO:0008150"],"is_obsolete":false,"name":"regulation of granulocyte macrophage colony-stimulating factor production","secondary_identifiers":["GO:0045423"],"synonyms":[{"name":"regulation of GM-CSF production","type":"exact"},{"name":"regulation of granulocyte macrophage colony stimulating factor production","type":"exact"},{"name":"regulation of granulocyte macrophage colony-stimulating factor biosynthetic process","type":"narrow"}],"termid":"GO:0032645"}


id: GO:1903995
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of non-membrane spanning protein tyrosine kinase activity.","definition_xrefs":["GO_REF:0000059","GOC:BHF","GOC:TermGenie","GOC:nc","PMID:10518561"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of protein tyrosine kinase activity","termid":"GO:0061097"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of non-membrane spanning protein tyrosine kinase activity","synonyms":[{"name":"regulation of ATP:protein-L-tyrosine O-phosphotransferase (non-specific) activity","type":"exact"},{"name":"regulation of ATP:protein-tyrosine O-phosphotransferase activity","type":"broad"},{"name":"regulation of Bruton's tyrosine kinase activity","type":"narrow"},{"name":"regulation of cytoplasmic protein tyrosine kinase activity","type":"narrow"},{"name":"regulation of focal adhesion kinase activity","type":"narrow"},{"name":"regulation of janus kinase 1 activity","type":"narrow"},{"name":"regulation of janus kinase 2 activity","type":"narrow"},{"name":"regulation of janus kinase 3 activity","type":"narrow"},{"name":"regulation of non-specific protein-tyrosine kinase activity","type":"exact"},{"name":"regulation of p60c-src protein tyrosine kinase activity","type":"narrow"}],"termid":"GO:1903995"}


id: MOD:01646
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively removes or replaces an L-serine.","definition_xrefs":["PubMed:18688235"],"direct_ancestors":[{"relation_name":"is_a","term_name":"modified L-serine residue","termid":"MOD:00916"},{"relation_name":"is_a","term_name":"natural, standard, encoded residue removal","termid":"MOD:01651"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"L-serine removal","termid":"MOD:01646"}


id: PBO:0090967
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"bis(5'-adenosyl)-triphosphatase Nit1","termid":"PBO:0090967"}


id: GO:0098788
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The terminal swelling of an apical dendrite of a ciliated olfactory receptor neuron. Each knob gives rise to 5 to 20 long delicate nonmotile cilia, which extend into the mucus covering the sensory epithelium.","definition_xrefs":["PMID:20801626"],"direct_ancestors":[{"relation_name":"is_a","term_name":"dendrite terminus","termid":"GO:0044292"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"dendritic knob","synonyms":[{"name":"apical dendritic knob","type":"exact"}],"termid":"GO:0098788"}


id: GO:0042995
data:
  {"annotated_genes":["SJAG_04470","SJAG_02379","SJAG_03596","SJAG_00677","SJAG_00185","SJAG_04982","SJAG_00870","SJAG_02486","SJAG_01017","SJAG_01888","SJAG_00667","SJAG_02924","SJAG_04001","SJAG_03625","SJAG_00514","SJAG_01794","SJAG_00700","SJAG_03688","SJAG_04621","SJAG_03453","SJAG_03145","SJAG_00279","SJAG_02228","SJAG_04509","SJAG_03646","SJAG_03357","SJAG_01943","SJAG_00663","SJAG_05001","SJAG_03123","SJAG_01732","SJAG_03131","SJAG_01171","SJAG_01978","SJAG_01215","SJAG_01993","SJAG_04723","SJAG_04100","SJAG_04886","SJAG_03011","SJAG_02989","SJAG_04781","SJAG_05285","SJAG_04901","SJAG_00938","SJAG_02718","SJAG_02169","SJAG_02700","SJAG_03444","SJAG_02351","SJAG_02222","SJAG_04887","SJAG_01769","SJAG_04703"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[84828,107214],"is_not":false,"summary":null,"term":"GO:0042995"},{"annotations":[107326,88071],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0005937"},{"annotations":[86373,88072,84590,83753,90954,103984,97736,110679,104047,95889,115701,91036,89652,107275,89454,112261,97737,95286],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:1990819"},{"annotations":[83609,94722],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0070250"},{"annotations":[90145,101883,112047,95853],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0032175"},{"annotations":[96981,102745,103049,104768,83352,93434,110371,84591,99066,88142,92902,101976,102775,85367,90955,86196,91037,90443,92054,93633,89099,104535,111892,92562,107845,86239,88073,94636,106137,104982,87875,114721],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0043332"},{"annotations":[92055,106138],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0070867"}]},"cv_name":"cellular_component","definition":"A prolongation or process extending from a cell, e.g. a flagellum or axon.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular anatomical entity","termid":"GO:0110165"}],"gene_count":54,"genes_by_uniquename":{"SJAG_00185":null,"SJAG_00279":null,"SJAG_00514":null,"SJAG_00663":null,"SJAG_00667":null,"SJAG_00677":null,"SJAG_00700":null,"SJAG_00870":null,"SJAG_00938":null,"SJAG_01017":null,"SJAG_01171":null,"SJAG_01215":null,"SJAG_01732":null,"SJAG_01769":null,"SJAG_01794":null,"SJAG_01888":null,"SJAG_01943":null,"SJAG_01978":null,"SJAG_01993":null,"SJAG_02169":null,"SJAG_02222":null,"SJAG_02228":null,"SJAG_02351":null,"SJAG_02379":null,"SJAG_02486":null,"SJAG_02700":null,"SJAG_02718":null,"SJAG_02924":null,"SJAG_02989":null,"SJAG_03011":null,"SJAG_03123":null,"SJAG_03131":null,"SJAG_03145":null,"SJAG_03357":null,"SJAG_03444":null,"SJAG_03453":null,"SJAG_03596":null,"SJAG_03625":null,"SJAG_03646":null,"SJAG_03688":null,"SJAG_04001":null,"SJAG_04100":null,"SJAG_04470":null,"SJAG_04509":null,"SJAG_04621":null,"SJAG_04703":null,"SJAG_04723":null,"SJAG_04781":null,"SJAG_04886":null,"SJAG_04887":null,"SJAG_04901":null,"SJAG_04982":null,"SJAG_05001":null,"SJAG_05285":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"cell projection","references_by_uniquename":{"GO_REF:0000107":null,"PMID:36148799":null},"synonyms":[{"name":"cell process","type":"broad"},{"name":"cellular process","type":"broad"},{"name":"cellular projection","type":"exact"}],"termid":"GO:0042995","terms_by_termid":{"GO:0005937":null,"GO:0032175":null,"GO:0042995":null,"GO:0043332":null,"GO:0070250":null,"GO:0070867":null,"GO:1990819":null}}


id: GO:0036120
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a platelet-derived growth factor stimulus.","definition_xrefs":["GOC:yaf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to platelet-derived growth factor","termid":"GO:0036119"},{"relation_name":"is_a","term_name":"cellular response to growth factor stimulus","termid":"GO:0071363"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cellular response to platelet-derived growth factor stimulus","synonyms":[{"name":"cellular response to PDGF stimulus","type":"exact"}],"termid":"GO:0036120"}


id: PBO:0080313
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"vomeronasal 1 receptor 77 pseudogene","termid":"PBO:0080313"}


id: GO:0061303
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The progression of the cornea over time, from its formation to the mature structure. The cornea is the transparent structure that covers the anterior of the eye.","definition_xrefs":["GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"anatomical structure development","termid":"GO:0048856"},{"relation_name":"part_of","term_name":"camera-type eye development","termid":"GO:0043010"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cornea development in camera-type eye","termid":"GO:0061303"}


id: PBO:0041677
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cell adhesion molecule 3","termid":"PBO:0041677"}


id: PBO:0040508
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"arginine vasopressin","termid":"PBO:0040508"}


id: PBO:0073792
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"solute carrier family 5 member 12","termid":"PBO:0073792"}


id: PBO:0082402
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Beta subunit of the F1 sector of mitochondrial F1F0 ATP synthase; which is a large, evolutionarily conserved enzyme complex required for ATP synthesis; F1 translationally regulates ATP6 and ATP8 expression to achieve a balanced output of ATP synthase genes encoded in nucleus and mitochondria; phosphorylated","termid":"PBO:0082402"}


id: PBO:0090644
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TIM23 translocase complex subunit Tim15","termid":"PBO:0090644"}


id: PBO:0081494
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ZNF385D antisense RNA 2","termid":"PBO:0081494"}


id: MOD:01916
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-tyrosine residue to O4'-(N-acetylamino)galactosyl-L-tyrosine.","definition_xrefs":["RESID:AA0577","PubMed:21712440","PubMed:21983924"],"direct_ancestors":[{"relation_name":"is_a","term_name":"N-acetylaminogalactosylated residue","termid":"MOD:00563"},{"relation_name":"is_a","term_name":"O-glycosyl-L-tyrosine","termid":"MOD:01927"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:00693"}],"interesting_parent_ids":["MOD:00693"],"is_obsolete":false,"name":"O4'-(N-acetylamino)galactosyl-L-tyrosine","synonyms":[{"name":"(2S)-2-amino-3-(D-2-acetamido-2-deoxygalactopyranosyloxy)phenylpropanoic acid","type":"exact"},{"name":"CARBOHYD O-linked (GalNAc) tyrosine","type":"exact"},{"name":"O4'-(N-acetylamino)galactosyl-L-tyrosine","type":"exact"},{"name":"O4'-(N-acetylgalactosaminyl)tyrosine","type":"exact"},{"name":"O4'-glycosyl-L-tyrosine","type":"exact"},{"name":"mucin type O-glycosyltyrosine","type":"exact"}],"termid":"MOD:01916"}


id: PBO:0084569
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Membrane protein involved in zinc ion homeostasis; member of the four-protein IZH family; expression induced by fatty acids and altered zinc levels; deletion reduces sensitivity to excess zinc; possible role in sterol metabolism; protein increases in abundance and relocalizes from nucleus to ER upon DNA replication stress; IZH4 has a paralog, IZH1, that arose from the whole genome duplication","termid":"PBO:0084569"}


id: PBO:0034792
data:
  {"annotation_feature_type":"gene","cv_name":"warning","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncertain translation start point","termid":"PBO:0034792"}


id: FYPO:0004095
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype in which the localization of a protein in a cell is normal (i.e. indistinguishable from wild type) during the meiotic cell cycle.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal protein localization","termid":"FYPO:0003627"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0000138"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0000257","FYPO:0000138"],"is_obsolete":false,"name":"normal protein localization during meiotic cell cycle","synonyms":[{"name":"normal protein localisation during meiotic cell cycle","type":"exact"}],"termid":"FYPO:0004095"}


id: GO:1990922
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The multiplication or reproduction of hepatic stellate cells, resulting in the expansion of a hepatic stellate cell population. Hepatic stellate cells are found in the perisinusoidal space of the liver, and are capable of multiple roles including storage of retinol, presentation of antigen to T cells (including CD1d-restricted NKT cells), and upon activation, production of extracellular matrix components. This cell type comprises approximately 8-15% of total cells in the liver.","definition_xrefs":["GOC:sl","PMID:15358192","PMID:18466260"],"direct_ancestors":[{"relation_name":"is_a","term_name":"fibroblast proliferation","termid":"GO:0048144"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"hepatic stellate cell proliferation","synonyms":[{"name":"Ito cell proliferation","type":"exact"},{"name":"hepatic perisinusoidal cell proliferation","type":"exact"},{"name":"perisinusoidal cell proliferation","type":"exact"}],"termid":"GO:1990922"}


id: PBO:0067607
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 775, pseudogene","termid":"PBO:0067607"}


id: GO:2000817
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any regulation of histone H3-T3 phosphorylation that is involved in chromosome passenger complex localization to kinetochore.","definition_xrefs":["GOC:obol"],"gene_count":0,"genotype_count":0,"name":"obsolete regulation of histone H3-T3 phosphorylation involved in chromosome passenger complex localization to kinetochore (obsolete GO:2000817)","synonyms":[{"name":"regulation of histone H3-T3 phosphorylation involved in CPC complex localization to kinetochore","type":"exact"},{"name":"regulation of histone H3-T3 phosphorylation involved in CPC localization to kinetochore","type":"exact"},{"name":"regulation of histone H3-T3 phosphorylation involved in chromosomal passenger complex localization to kinetochore","type":"exact"},{"name":"regulation of histone H3-T3 phosphorylation involved in chromosome passenger complex localisation to kinetochore","type":"related"}],"termid":"GO:2000817"}


id: SO:0001073
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"Polypeptide region that is localized inside the cytoplasm.","definition_xrefs":["SO:cb","EBIBS:GAR"],"direct_ancestors":[{"relation_name":"is_a","term_name":"extramembrane_polypeptide_region","termid":"SO:0001072"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"SO:0000839"}],"interesting_parent_ids":["SO:0000839"],"is_obsolete":false,"name":"cytoplasmic_polypeptide_region","secondary_identifiers":["BS:00145"],"synonyms":[{"name":"cytoplasm_location","type":"exact"},{"name":"cytoplasmic polypeptide region","type":"exact"},{"name":"inside","type":"related"}],"termid":"SO:0001073"}


id: FYPO:0006118
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A phenotype observed in the vegetative growth phase of the life cycle in which cells show increased sensitivity to 5-fluoroorotic acid (5-FOA). Cells stop growing (and may die) at a concentration of 5-FOA that allows wild type cells to grow.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased sensitivity to chemical during vegetative growth","termid":"FYPO:0000127"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0002683"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000139"},{"rel_name":"is_a","termid":"FYPO:0000003"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0002683","FYPO:0000139","FYPO:0001985","FYPO:0000003"],"is_obsolete":false,"name":"sensitive to 5-fluoroorotic acid","synonyms":[{"name":"hypersensitive to 5-fluoroorotic acid","type":"exact"},{"name":"sensitive to 5-FOA","type":"exact"},{"name":"sensitive to 5-fluoroorotic acid during mitotic cell cycle","type":"related"},{"name":"sensitive to 5-fluoroorotic acid during vegetative growth","type":"exact"}],"termid":"FYPO:0006118"}


id: GO:0150139
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of interleukin-37 production.","definition_xrefs":["GOC:aruk"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of cytokine production","termid":"GO:0001819"},{"relation_name":"is_a","term_name":"regulation of interleukin-37 production","termid":"GO:0150136"},{"relation_name":"positively_regulates","term_name":"interleukin-37 production","termid":"GO:0150137"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0010467"},{"rel_name":"positively_regulates","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0010467","GO:0008150"],"is_obsolete":false,"name":"positive regulation of interleukin-37 production","synonyms":[{"name":"positive regulation of interleukin-37 biosynthetic process","type":"narrow"}],"termid":"GO:0150139"}


id: PBO:0073455
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"surfactant associated 1, lncRNA","termid":"PBO:0073455"}


id: PBO:0067676
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 861, pseudogene","termid":"PBO:0067676"}


id: PBO:0073800
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"solute carrier family 6 member 6 pseudogene 1","termid":"PBO:0073800"}


id: GO:0060141
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which a virus increases the frequency, rate or extent of the formation of a syncytium, a mass of cytoplasm containing several nuclei enclosed within a single plasma membrane, by the fusion of the plasma membranes of two or more individual cells.","definition_xrefs":["GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"modulation by virus of host cellular process","termid":"GO:0019054"},{"relation_name":"is_a","term_name":"symbiont-mediated perturbation of host cellular process","termid":"GO:0044068"},{"relation_name":"is_a","term_name":"modulation by virus of syncytium formation via plasma membrane fusion","termid":"GO:0060140"},{"relation_name":"is_a","term_name":"positive regulation of syncytium formation by plasma membrane fusion","termid":"GO:0060143"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of syncytium formation by virus","synonyms":[{"name":"syncytium formation induced by viral infection","type":"exact"}],"termid":"GO:0060141"}


id: GO:1903318
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of protein maturation.","definition_xrefs":["GOC:TermGenie","GO_REF:0000058","GOC:vw"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of gene expression","termid":"GO:0010629"},{"relation_name":"is_a","term_name":"negative regulation of protein metabolic process","termid":"GO:0051248"},{"relation_name":"is_a","term_name":"regulation of protein maturation","termid":"GO:1903317"},{"relation_name":"negatively_regulates","term_name":"protein maturation","termid":"GO:0051604"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0051604"},{"rel_name":"negatively_regulates","termid":"GO:0051604"},{"rel_name":"negatively_regulates","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0010467","GO:0051604","GO:0008150"],"is_obsolete":false,"name":"negative regulation of protein maturation","synonyms":[{"name":"down regulation of protein maturation","type":"exact"},{"name":"down-regulation of protein maturation","type":"exact"},{"name":"downregulation of protein maturation","type":"exact"},{"name":"inhibition of protein maturation","type":"narrow"}],"termid":"GO:1903318"}


id: PBO:0082516
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Catalytic subunit of the NatC type N-terminal acetyltransferase (NAT); involved in subcellular targeting of select N-terminally acetylated substrates to the Golgi apparatus (Arl3p and Grh1p) and the inner nuclear membrane (Trm1p); required for replication of dsRNA virus; human NatC ortholog, NAA30, functionally complements the null, requiring either auxiliary subunit Mak10p or co-expression of human ortholog, NAA35; NAA60, the human NatF gene, also complements the null allele","termid":"PBO:0082516"}


id: PBO:0053657
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 710","termid":"PBO:0053657"}


id: PBO:0027286
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-cut_during_cellular_response_to_UV","termid":"PBO:0027286"}


id: MOD:00945
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"OBSOLETE because redundant and identical to MOD:00626. Remap to MOD:00626.","definition_xrefs":["PubMed:18688235"],"gene_count":0,"genotype_count":0,"name":"OBSOLETE MOD:00945 fluorescein-5-thiosemicarbazide adduct (obsolete MOD:00945)","termid":"MOD:00945"}


id: PBO:0054194
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1569","termid":"PBO:0054194"}


id: GO:0047547
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: (2S,3S)-2-methylcitrate = cis-2-methylaconitate + H2O.","definition_xrefs":["EC:4.2.1.79","RHEA:17725"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hydro-lyase activity","termid":"GO:0016836"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016829"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016829","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"2-methylcitrate dehydratase activity","secondary_identifiers":["MetaCyc:2-METHYLCITRATE-DEHYDRATASE-RXN","KEGG_REACTION:R04424"],"synonyms":[{"name":"(2S,3S)-2-hydroxybutane-1,2,3-tricarboxylate hydro-lyase [(Z)-but-2-ene-1,2,3-tricarboxylate-forming]","type":"related"},{"name":"2-hydroxybutane-1,2,3-tricarboxylate hydro-lyase activity","type":"related"},{"name":"2-methylcitrate hydro-lyase activity","type":"related"},{"name":"prpD","type":"related"}],"termid":"GO:0047547"}


id: GO:1903049
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of acetylcholine-gated cation channel activity.","definition_xrefs":["GO_REF:0000059","GOC:PARL","GOC:TermGenie","PMID:21718690","GOC:bf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of acetylcholine-gated cation channel activity","termid":"GO:1903048"},{"relation_name":"is_a","term_name":"negative regulation of signaling receptor activity","termid":"GO:2000272"},{"relation_name":"is_a","term_name":"negative regulation of cation channel activity","termid":"GO:2001258"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0055085"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"regulates","termid":"GO:0023052"},{"rel_name":"negatively_regulates","termid":"GO:0006810"},{"rel_name":"negatively_regulates","termid":"GO:0055085"}],"interesting_parent_ids":["GO:0023052","GO:0008150","GO:0055085","GO:0006810"],"is_obsolete":false,"name":"negative regulation of acetylcholine-gated cation channel activity","synonyms":[{"name":"down regulation of acetylcholine-gated cation channel activity","type":"exact"},{"name":"down-regulation of acetylcholine-gated cation channel activity","type":"exact"},{"name":"downregulation of acetylcholine-gated cation channel activity","type":"exact"},{"name":"inhibition of acetylcholine-gated cation channel activity","type":"narrow"}],"termid":"GO:1903049"}


id: PBO:0005347
data:
  {"annotation_feature_type":"gene","cv_name":"sequence_feature","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protein cleavage site","termid":"PBO:0005347"}


id: FYPO:0008025
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed during mitotic M-phase in which the localization of a protein to the CENP-A containing chromatin is normal (i.e. indistinguishable from wild type).","definition_xrefs":["PMID:35970865","PomBase:mlr"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal protein localization to CENP-A containing chromatin","termid":"FYPO:0004314"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0001312"}],"interesting_parent_ids":["FYPO:0000138","FYPO:0000257","FYPO:0000002","FYPO:0001312","FYPO:0001320"],"is_obsolete":false,"name":"normal protein localization to CENP-A containing chromatin during mitosis","synonyms":[{"name":"normal protein localization to CENP-A containing chromatin during mitotic M-phase","type":"exact"},{"name":"normal protein localization to centromeric core region chromatin during mitosis","type":"exact"}],"termid":"FYPO:0008025"}


id: GO:0035718
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to the cytokine, macrophage migration inhibitory factor.","definition_xrefs":["PMID:19601712","GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cytokine binding","termid":"GO:0019955"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0005515"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0005488","GO:0005515"],"is_obsolete":false,"name":"macrophage migration inhibitory factor binding","synonyms":[{"name":"MIF binding","type":"exact"}],"termid":"GO:0035718"}


id: PBO:0072700
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RuvB like AAA ATPase 1","termid":"PBO:0072700"}


id: FYPO:0004013
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of 4,6-pyruvylated D-galactose (4,6-O-[(1R)-1-carboxyethylidene]-D-galactose) measured at the cell surface is lower than normal. The cell surface refers to the external part of the cell wall and/or plasma membrane.","definition_xrefs":["PomBase:mah","PMID:25195688"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased level of substance in cell during vegetative growth","termid":"FYPO:0001329"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0001320","FYPO:0000002"],"is_obsolete":false,"name":"decreased cell surface pyruvylated galactose level","synonyms":[{"name":"decreased cell surface 4,6-4,6-O-[(1R)-1-carboxyethylidene]-D-galactose level","type":"exact"},{"name":"decreased cell surface 4,6-pyruvylated D-galactose level","type":"exact"},{"name":"decreased cell surface PvGal level","type":"exact"},{"name":"decreased cell surface pyruvylated galactose level during mitotic cell cycle","type":"related"},{"name":"decreased cell surface pyruvylated galactose level during vegetative growth","type":"exact"},{"name":"decreased level of pyruvylated galactose at cell surface","type":"exact"},{"name":"reduced cell surface pyruvylated galactose level","type":"exact"}],"termid":"FYPO:0004013"}


id: PBO:0056442
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MARK2 pseudogene 15","termid":"PBO:0056442"}


id: GO:0005827
data:
  {"annotated_genes":["SJAG_00918","SJAG_01224","SJAG_03073","SJAG_02624","SJAG_01613","SJAG_04745"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[90417,94966,97210],"is_not":false,"summary":null,"term":"GO:0005827"},{"annotations":[94964,114218,94352,103395],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1990537"}]},"cv_name":"cellular_component","definition":"Any of the spindle microtubules that come from each pole and overlap at the spindle midzone. This interdigitating structure consisting of antiparallel microtubules is responsible for pushing the poles of the spindle apart.","definition_xrefs":["ISBN:0815316194"],"direct_ancestors":[{"relation_name":"is_a","term_name":"spindle microtubule","termid":"GO:0005876"},{"relation_name":"part_of","term_name":"spindle pole","termid":"GO:0000922"}],"gene_count":6,"genes_by_uniquename":{"SJAG_00918":null,"SJAG_01224":null,"SJAG_01613":null,"SJAG_02624":null,"SJAG_03073":null,"SJAG_04745":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0015630"}],"interesting_parent_ids":["GO:0015630","GO:0005575"],"is_obsolete":false,"name":"polar microtubule","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"pole-to-pole microtubule","type":"exact"}],"termid":"GO:0005827","terms_by_termid":{"GO:0005827":null,"GO:1990537":null}}


id: PBO:0048995
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"GPC5 antisense RNA 1","termid":"PBO:0048995"}


id: PR:Q9UTJ7
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PANTHER:PTHR11632:SF5","PRO:DNx","OMA:SCHPO01567"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC1556.02c","secondary_identifiers":["UniProtKB:Q9UTJ7"],"synonyms":[{"name":"FP (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-SDHA","type":"exact"},{"name":"flavoprotein subunit of complex II (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:Q9UTJ7"}


id: GO:0002026
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the extent of heart contraction, changing the force with which blood is propelled.","definition_xrefs":["GOC:dph","PMID:10358008","GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of heart contraction","termid":"GO:0008016"},{"relation_name":"is_a","term_name":"regulation of biological quality","termid":"GO:0065008"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of the force of heart contraction","synonyms":[{"name":"cardiac inotropy","type":"exact"},{"name":"heart inotropy","type":"exact"}],"termid":"GO:0002026"}


id: PBO:0017697
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glycosylceramide biosynthesis protein Cwh43 (predicted)","termid":"PBO:0017697"}


id: GO:0009804
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving coumarins, compounds derived from the phenylacrylic skeleton of cinnamic acids.","definition_xrefs":["GOC:lr","GOC:yl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phenylpropanoid metabolic process","termid":"GO:0009698"},{"relation_name":"is_a","term_name":"heterocycle metabolic process","termid":"GO:0046483"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0019748"}],"interesting_parent_ids":["GO:0008150","GO:0019748"],"is_obsolete":false,"name":"coumarin metabolic process","synonyms":[{"name":"coumarin metabolism","type":"exact"}],"termid":"GO:0009804"}


id: PBO:0055782
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"LONRF2 pseudogene 2","termid":"PBO:0055782"}


id: GO:0034337
data:
  {"annotated_genes":["SJAG_00886","SJAG_00195"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[60766],"is_not":false,"summary":null,"term":"GO:0034337"},{"annotations":[94218],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0061818"}]},"cv_name":"biological_process","definition":"The process of assisting in the covalent and noncovalent assembly of single or multimeric RNAs into the correct tertiary structure.","definition_xrefs":["GOC:mah","PMID:10393192"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular process","termid":"GO:0009987"}],"gene_count":2,"genes_by_uniquename":{"SJAG_00195":null,"SJAG_00886":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"RNA folding","references_by_uniquename":{"GO_REF:0000107":null,"GO_REF:0000108":null},"synonyms":[{"name":"RNA chaperone","type":"related"}],"termid":"GO:0034337","terms_by_termid":{"GO:0034337":null,"GO:0061818":null}}


id: GO:0044516
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process that activates or increases the frequency, rate or extent of the activity of a glucagon-like peptide receptor 1 in a second organism.","definition_xrefs":["GOC:jl","PMID:8405712","GOC:fj"],"direct_ancestors":[{"relation_name":"is_a","term_name":"modulation of glucagon-like peptide receptor 1 activity in another organism","termid":"GO:0044506"},{"relation_name":"is_a","term_name":"positive regulation of receptor activity in another organism","termid":"GO:0044507"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of glucagon-like peptide receptor 1 activity in another organism","synonyms":[{"name":"positive regulation of glucagon-like peptide receptor 1 activity in other organism","type":"exact"}],"termid":"GO:0044516"}


id: PBO:0090007
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DNA-binding transcription factor for histones, zf-GATA-type Ams2","termid":"PBO:0090007"}


id: PBO:0062547
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 9 subfamily L member 1 pseudogene","termid":"PBO:0062547"}


id: PBO:0062408
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 7 subfamily E member 35 pseudogene","termid":"PBO:0062408"}


id: GO:0044427
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"OBSOLETE. Any constituent part of a chromosome, a structure composed of a very long molecule of DNA and associated proteins (e.g. histones) that carries hereditary information.","definition_xrefs":["GOC:jl"],"gene_count":0,"genotype_count":0,"name":"obsolete chromosomal part (obsolete GO:0044427)","synonyms":[{"name":"chromosomal component","type":"exact"},{"name":"chromosome component","type":"exact"},{"name":"chromosome part","type":"exact"}],"termid":"GO:0044427"}


id: GO:1902154
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of response to DNA damage checkpoint signaling.","definition_xrefs":["GOC:mtg_cell_cycle","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of response to DNA integrity checkpoint signaling","termid":"GO:1902152"},{"relation_name":"is_a","term_name":"regulation of response to DNA damage checkpoint signaling","termid":"GO:1902153"},{"relation_name":"positively_regulates","term_name":"response to DNA damage checkpoint signaling","termid":"GO:0072423"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of response to DNA damage checkpoint signaling","synonyms":[{"name":"activation of DNA damage checkpoint effector process","type":"exact"},{"name":"activation of response to DNA damage checkpoint signaling","type":"narrow"},{"name":"activation of response to signal involved in DNA damage checkpoint","type":"exact"},{"name":"positive regulation of DNA damage checkpoint effector process","type":"exact"},{"name":"positive regulation of response to signal involved in DNA damage checkpoint","type":"exact"},{"name":"up regulation of DNA damage checkpoint effector process","type":"exact"},{"name":"up regulation of response to DNA damage checkpoint signaling","type":"exact"},{"name":"up regulation of response to signal involved in DNA damage checkpoint","type":"exact"},{"name":"up-regulation of DNA damage checkpoint effector process","type":"exact"},{"name":"up-regulation of response to DNA damage checkpoint signaling","type":"exact"},{"name":"up-regulation of response to signal involved in DNA damage checkpoint","type":"exact"},{"name":"upregulation of DNA damage checkpoint effector process","type":"exact"},{"name":"upregulation of response to DNA damage checkpoint signaling","type":"exact"},{"name":"upregulation of response to signal involved in DNA damage checkpoint","type":"exact"}],"termid":"GO:1902154"}


id: GO:0046665
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Maintenance of the amnioserosa, an epithelium that occupies a hole in the embryonic dorsal epidermis.","definition_xrefs":["GOC:bf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"tissue homeostasis","termid":"GO:0001894"},{"relation_name":"part_of","term_name":"embryonic development via the syncytial blastoderm","termid":"GO:0001700"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"amnioserosa maintenance","termid":"GO:0046665"}


id: PBO:0087729
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Subunit of the SF3a splicing factor complex; required for spliceosome assembly","termid":"PBO:0087729"}


id: MOD:00637
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively replaces one hydrogen atom of an L-arginine residue with a (13)C,3x(2)H labeled methyl group to form a 1x(13)C,3x(2)H labeled monomethylated L-arginine.","definition_xrefs":["Unimod:329"],"direct_ancestors":[{"relation_name":"derives_from","term_name":"monomethylated L-arginine","termid":"MOD:00414"},{"relation_name":"is_a","term_name":"(2)H deuterium labeled residue","termid":"MOD:00839"},{"relation_name":"is_a","term_name":"(13)C labeled residue","termid":"MOD:00842"},{"relation_name":"is_a","term_name":"modified L-arginine residue","termid":"MOD:00902"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"1x(13)C,3x(2)H labeled monomethylated L-arginine","synonyms":[{"name":"Methyl:2H(3)13C(1)","type":"related"},{"name":"monomethylated arginine","type":"related"}],"termid":"MOD:00637"}


id: PBO:0052480
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"kelch domain containing 7B","termid":"PBO:0052480"}


id: PBO:0089459
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"U2 snRNP-associated protein, WD repeat protein Sap130","termid":"PBO:0089459"}


id: PATO:0001432
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A quality inhering in a bearer by virtue of the bearer's decomposition into component parts.","definition_xrefs":["Medical-dictionary:Medical-dictionary"],"direct_ancestors":[{"relation_name":"is_a","term_name":"viability","termid":"PATO:0000169"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"decayed","termid":"PATO:0001432"}


id: GO:0097226
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The tightly packed helical sheath of ATP-producing mitochondria restricted to the midpiece of the sperm flagellum.","definition_xrefs":["MP:0009832","GOC:cjm","PMID:32791035"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular anatomical entity","termid":"GO:0110165"},{"relation_name":"part_of","term_name":"sperm midpiece","termid":"GO:0097225"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"sperm mitochondrial sheath","termid":"GO:0097226"}


id: PBO:0071253
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L23a pseudogene 94","termid":"PBO:0071253"}


id: GO:0110034
data:
  {"annotated_genes":["SJAG_02481","SJAG_02311","SJAG_02426","SJAG_01245","SJAG_00266"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[87637,88362,96204,103883,112472],"is_not":false,"summary":null,"term":"GO:0110034"}]},"cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of the adenylate cyclase-activating glucose-activated G protein-coupled receptor signaling pathway.","definition_xrefs":["GOC:al","PMID:24297439"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of adenylate cyclase-activating G protein-coupled receptor signaling pathway","termid":"GO:0106072"},{"relation_name":"is_a","term_name":"regulation of adenylate cyclase-activating glucose-activated G protein-coupled receptor signaling pathway","termid":"GO:0110033"},{"relation_name":"is_a","term_name":"negative regulation of glucose mediated signaling pathway","termid":"GO:1902660"},{"relation_name":"negatively_regulates","term_name":"adenylate cyclase-activating glucose-activated G protein-coupled receptor signaling pathway","termid":"GO:0010619"}],"gene_count":5,"genes_by_uniquename":{"SJAG_00266":null,"SJAG_01245":null,"SJAG_02311":null,"SJAG_02426":null,"SJAG_02481":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"negatively_regulates","termid":"GO:0023052"},{"rel_name":"regulates","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"negative regulation of adenylate cyclase-activating glucose-activated G protein-coupled receptor signaling pathway","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"negative regulation of adenylate cyclase-activating glucose-activated G-protein coupled receptor signaling pathway","type":"exact"}],"termid":"GO:0110034","terms_by_termid":{"GO:0110034":null}}


id: GO:0061462
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process in which a protein is transported to, or maintained in, a location within a lysosome.","definition_xrefs":["GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein localization to vacuole","termid":"GO:0072665"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0051179"}],"interesting_parent_ids":["GO:0008150","GO:0051179"],"is_obsolete":false,"name":"protein localization to lysosome","termid":"GO:0061462"}


id: PBO:0040383
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ATPase H+ transporting accessory protein 1 like (pseudogene)","termid":"PBO:0040383"}


id: PBO:0039955
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ADP ribosylation factor like GTPase 2","termid":"PBO:0039955"}


id: GO:0031540
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of anthocyanins.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of flavonoid biosynthetic process","termid":"GO:0009962"},{"relation_name":"is_a","term_name":"regulation of anthocyanin metabolic process","termid":"GO:0031537"},{"relation_name":"regulates","term_name":"anthocyanin-containing compound biosynthetic process","termid":"GO:0009718"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of anthocyanin biosynthetic process","synonyms":[{"name":"regulation of anthocyanin biosynthesis","type":"exact"},{"name":"regulation of anthocyanin anabolism","type":"exact"},{"name":"regulation of anthocyanin formation","type":"exact"},{"name":"regulation of anthocyanin synthesis","type":"exact"}],"termid":"GO:0031540"}


id: GO:0046670
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of programmed cell death that occurs in the retina.","definition_xrefs":["GOC:tb","GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of programmed cell death","termid":"GO:0043068"},{"relation_name":"is_a","term_name":"regulation of retinal cell programmed cell death","termid":"GO:0046668"},{"relation_name":"is_a","term_name":"positive regulation of developmental process","termid":"GO:0051094"},{"relation_name":"positively_regulates","term_name":"retinal cell programmed cell death","termid":"GO:0046666"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of retinal cell programmed cell death","synonyms":[{"name":"activation of retinal programmed cell death","type":"narrow"},{"name":"positive regulation of retinal programmed cell death","type":"exact"},{"name":"stimulation of retinal programmed cell death","type":"narrow"},{"name":"up regulation of retinal programmed cell death","type":"exact"},{"name":"up-regulation of retinal programmed cell death","type":"exact"},{"name":"upregulation of retinal programmed cell death","type":"exact"}],"termid":"GO:0046670"}


id: PBO:0069648
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 925, pseudogene","termid":"PBO:0069648"}


id: PBO:0108622
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"IGBP1 pseudogene 5","termid":"PBO:0108622"}


id: GO:0047356
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: ribitol phosphate(n) + CDP-ribitol = ribitol phosphate(n+1) + CMP.","definition_xrefs":["EC:2.7.8.14","MetaCyc:2.7.8.14-RXN"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phosphotransferase activity, for other substituted phosphate groups","termid":"GO:0016780"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016780"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003824","GO:0016780","GO:0003674","GO:0016740"],"is_obsolete":false,"name":"CDP-ribitol ribitolphosphotransferase activity","secondary_identifiers":["MetaCyc:RXN-18380","RHEA:13353"],"synonyms":[{"name":"CDP-ribitol:poly(ribitol phosphate) ribitolphosphotransferase activity","type":"related"},{"name":"CDPribitol ribitolphosphotransferase activity","type":"related"},{"name":"poly(ribitol phosphate) synthetase activity","type":"related"},{"name":"polyribitol phosphate polymerase activity","type":"related"},{"name":"polyribitol phosphate synthetase activity","type":"related"},{"name":"teichoate synthase activity","type":"related"},{"name":"teichoate synthetase activity","type":"related"},{"name":"teichoic-acid synthase activity","type":"broad"}],"termid":"GO:0047356"}


id: PBO:0043807
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"carboxypeptidase N subunit 1","termid":"PBO:0043807"}


id: PATO:0000538
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0000538 alkali sensitivity value (obsolete PATO:0000538)","termid":"PATO:0000538"}


id: PBO:0049279
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"G1 to S phase transition 2","termid":"PBO:0049279"}


id: GO:0019703
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The covalent linkage of coenzyme A and peptidyl-cysteine to form L-cysteine coenzyme A disulfide.","definition_xrefs":["RESID:AA0306"],"direct_ancestors":[{"relation_name":"is_a","term_name":"peptidyl-cysteine modification","termid":"GO:0018198"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"coenzyme A-peptidyl-cysteine covalent linking","termid":"GO:0019703"}


id: GO:0007576
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The cell aging process that results in the nucleolus breaking down into fragments.","definition_xrefs":["GOC:mah","PMID:9271578"],"gene_count":0,"genotype_count":0,"name":"obsolete nucleolar fragmentation (obsolete GO:0007576)","synonyms":[{"name":"nucleolar size increase","type":"related"}],"termid":"GO:0007576"}


id: PBO:0087824
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TFIID subunit, involved in RNA pol II transcription initiation; possesses in vitro histone acetyltransferase activity but its role in vivo appears to be minor; involved in promoter binding and G1/S progression; relocalizes to the cytosol in response to hypoxia","termid":"PBO:0087824"}


id: GO:0006466
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. (Was not defined before being made obsolete).","definition_xrefs":["GOC:ai"],"gene_count":0,"genotype_count":0,"name":"obsolete protein disulfide-isomerase reaction (obsolete GO:0006466)","synonyms":[{"name":"protein disulfide-isomerase reaction","type":"exact"},{"name":"protein disulphide-isomerase reaction","type":"exact"}],"termid":"GO:0006466"}


id: PR:P0CF96
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- mzt1 gene.","definition_xrefs":["PRO:DNx","UniProtKB:P0CF96"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitotic-spindle organizing protein 1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC9G1.15c","synonyms":[{"name":"Spom972h-mzt1","type":"exact"},{"name":"mitotic-spindle organizing protein associated with a ring of gamma-tubulin 1 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"transcripts altered in meiosis protein 4 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:P0CF96"}


id: PBO:0073789
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"solute carrier family 5 member 9","termid":"PBO:0073789"}


id: PBO:0084266
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Integral membrane component of ER-derived COPII-coated vesicles; functions in ER to Golgi transport; forms a complex with Ssp120p that may function in trafficking plasma membrane glycoproteins through early secretory pathway; EMP47 has a paralog, EMP46, that arose from the whole genome duplication","termid":"PBO:0084266"}


id: GO:0019776
data:
  {"annotated_genes":["SJAG_03136","SJAG_06309","SJAG_01561","SJAG_00059"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[85606,105712,106219,106614],"is_not":false,"summary":null,"term":"GO:0019776"}]},"cv_name":"molecular_function","definition":"Catalysis of the covalent attachment of the ubiquitin-like protein Atg8 family modifer to phosphatidylethanolamine or phosphatidylserine on a membrane.","definition_xrefs":["PMID:12826404"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ubiquitin-like protein ligase activity","termid":"GO:0061659"}],"gene_count":4,"genes_by_uniquename":{"SJAG_00059":null,"SJAG_01561":null,"SJAG_03136":null,"SJAG_06309":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0019787"},{"rel_name":"is_a","termid":"GO:0140096"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016746"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016740"}],"interesting_parent_ids":["GO:0003824","GO:0140096","GO:0019787","GO:0016746","GO:0003674","GO:0016740"],"is_obsolete":false,"name":"Atg8-family ligase activity","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["Reactome:R-HSA-5681981"],"synonyms":[{"name":"APG8 ligase activity","type":"exact"},{"name":"Atg8 ligase activity","type":"narrow"},{"name":"Atg8-like ligase activity","type":"exact"}],"termid":"GO:0019776","terms_by_termid":{"GO:0019776":null}}


id: PBO:0028442
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_DNA_double-strand_break_formation_at_mating-type_locus","termid":"PBO:0028442"}


id: GO:0032778
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + cobalt(out) = ADP + phosphate + cobalt(in).","definition_xrefs":["ISBN:0815340729","GOC:mlg","GOC:mtg_transport"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cobalt ion transmembrane transporter activity","termid":"GO:0015087"},{"relation_name":"is_a","term_name":"P-type ion transporter activity","termid":"GO:0015662"},{"relation_name":"is_a","term_name":"ATPase-coupled monoatomic cation transmembrane transporter activity","termid":"GO:0019829"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0022857"}],"interesting_parent_ids":["GO:0005215","GO:0022857","GO:0003674"],"is_obsolete":false,"name":"P-type cobalt transporter activity","secondary_identifiers":["RHEA:32779","MetaCyc:TRANS-RXN-459","GO:0015632"],"synonyms":[{"name":"ATP-dependent cobalt transmembrane transporter activity","type":"related"},{"name":"ATPase-coupled cobalt transmembrane transporter activity","type":"related"},{"name":"cobalt porter activity","type":"related"},{"name":"cobalt transporting ATPase activity","type":"related"},{"name":"cobalt-transporting ATPase activity","type":"related"}],"termid":"GO:0032778"}


id: GO:0071253
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a connexin, any of a group of related proteins that assemble to form gap junctions.","definition_xrefs":["GOC:mah","PMID:19864490"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein binding","termid":"GO:0005515"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005515"},{"rel_name":"is_a","termid":"GO:0005488"}],"interesting_parent_ids":["GO:0003674","GO:0005515","GO:0005488"],"is_obsolete":false,"name":"connexin binding","termid":"GO:0071253"}


id: PBO:0064720
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"peptidylprolyl isomerase A pseudogene 56","termid":"PBO:0064720"}


id: PBO:0045423
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"divergent-paired related homeobox pseudogene 3","termid":"PBO:0045423"}


id: PBO:0063657
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"phosphoglycerate mutase 2","termid":"PBO:0063657"}


id: PBO:0044060
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cystatin E/M","termid":"PBO:0044060"}


id: PBO:0029102
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_cellular_asparagine_level","termid":"PBO:0029102"}


id: PBO:0005898
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"F0-ATPase subunit 8 (predicted)","termid":"PBO:0005898"}


id: GO:1903597
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of gap junction assembly.","definition_xrefs":["PMID:25017399","GOC:mtg_cardiac_conduct_nov11","GOC:rl","GOC:TermGenie","GO_REF:0000058","GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of cell junction assembly","termid":"GO:1901889"},{"relation_name":"is_a","term_name":"regulation of gap junction assembly","termid":"GO:1903596"},{"relation_name":"negatively_regulates","term_name":"gap junction assembly","termid":"GO:0016264"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0044085"}],"interesting_parent_ids":["GO:0008150","GO:0044085"],"is_obsolete":false,"name":"negative regulation of gap junction assembly","synonyms":[{"name":"down regulation of gap junction assembly","type":"exact"},{"name":"down-regulation of gap junction assembly","type":"exact"},{"name":"downregulation of gap junction assembly","type":"exact"},{"name":"inhibition of gap junction assembly","type":"narrow"}],"termid":"GO:1903597"}


id: PBO:0079958
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ubiquitin specific peptidase 8","termid":"PBO:0079958"}


id: GO:0048679
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of axon regeneration.","definition_xrefs":["GOC:dgh","GOC:jid","GOC:lm","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of response to external stimulus","termid":"GO:0032101"},{"relation_name":"is_a","term_name":"regulation of neuron projection regeneration","termid":"GO:0070570"},{"relation_name":"is_a","term_name":"regulation of response to wounding","termid":"GO:1903034"},{"relation_name":"regulates","term_name":"axon regeneration","termid":"GO:0031103"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of axon regeneration","termid":"GO:0048679"}


id: PBO:0080876
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"yippee like 2","termid":"PBO:0080876"}


id: MOD:01716
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"The protein modification reporter fragment produced by an Proteome Sciences TMT6plex-126 reagent acylated residue.","definition_xrefs":["PubMed:18688235"],"direct_ancestors":[{"relation_name":"derives_from","term_name":"TMT6plex reporter+balance reagent acylated residue","termid":"MOD:01715"},{"relation_name":"derives_from","term_name":"cysTMT6plex reporter+balance reagent cysteine disulfide","termid":"MOD:01821"},{"relation_name":"is_a","term_name":"modification reporter fragment","termid":"MOD:01520"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TMT6plex reporter fragment","synonyms":[{"name":"2,6-dimethyl-1-methylidenepiperidinium","type":"exact"},{"name":"cysTMT6plex reporter fragment","type":"exact"}],"termid":"MOD:01716"}


id: PBO:0073001
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sodium voltage-gated channel beta subunit 2","termid":"PBO:0073001"}


id: PBO:0087950
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Translation initiation factor eIF4G and scaffold protein; subunit of the mRNA cap-binding protein complex (eIF4F) with eIF4E (Cdc33p) and eIF4A (Tif1p/Tif2p); stimulates the ATPase and helicase activities of eIF4A synergistically with eIF4G; required with eIF4E for Ded1p-mediated stimulation of mRNA recruitment during 48S preinitiation complex (PIC) assembly; association with Pab1p mediates poly(A) tail-stimulated translation; role in biogenesis of the 60S ribosomal subunit","termid":"PBO:0087950"}


id: PR:Q9HDY4
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPAPB1A10.06c gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q9HDY4"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ATP-dependent RNA helicase PB1A10.06c (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAPB1A10.06c","synonyms":[{"name":"Spom972h-SPAPB1A10.06c","type":"exact"}],"termid":"PR:Q9HDY4"}


id: GO:0006098
data:
  {"annotated_genes":["SJAG_00070","SJAG_00501","SJAG_03934","SJAG_02297","SJAG_00685","SJAG_04263","SJAG_01824","SJAG_00633","SJAG_02148","SJAG_05314","SJAG_02696","SJAG_04334","SJAG_03852"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[84432,92051,104346,109863],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0009052"},{"annotations":[111395,107544,114534,93911,92682,90177,92592],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0009051"},{"annotations":[85198],"is_not":false,"rel_names":["regulates","positively_regulates"],"summary":null,"term":"GO:1905857"},{"annotations":[111066],"is_not":false,"rel_names":["regulates"],"summary":null,"term":"GO:0043456"}]},"cv_name":"biological_process","definition":"The metabolic process in which glucose-6-phosphate is oxidized to form carbon dioxide (CO2) and ribulose 5-phosphate, coupled to reduction of NADP+ to NADPH; ribulose 5-P then enters a series of reactions that can yield biosynthetic precursors (ribose-5-phosphate and erythrose-4-phosphate) and glycolytic intermediates (fructose-6-phosphate and glyceraldehyde-3-phosphate).","definition_xrefs":["MetaCyc:PENTOSE-P-PWY","GOC:pde","ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"NADPH regeneration","termid":"GO:0006740"},{"relation_name":"is_a","term_name":"glucose 6-phosphate metabolic process","termid":"GO:0051156"}],"gene_count":13,"genes_by_uniquename":{"SJAG_00070":null,"SJAG_00501":null,"SJAG_00633":null,"SJAG_00685":null,"SJAG_01824":null,"SJAG_02148":null,"SJAG_02297":null,"SJAG_02696":null,"SJAG_03852":null,"SJAG_03934":null,"SJAG_04263":null,"SJAG_04334":null,"SJAG_05314":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0055086"},{"rel_name":"is_a","termid":"GO:0006091"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0008150","GO:0055086","GO:0044281","GO:0006091"],"is_obsolete":false,"name":"pentose-phosphate shunt","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["KEGG_PATHWAY:map00030","Wikipedia:Pentose_phosphate_pathway","Reactome:R-HSA-71336"],"synonyms":[{"name":"hexose monophosphate pathway","type":"exact"},{"name":"pentose phosphate pathway","type":"exact"},{"name":"pentose phosphate shunt","type":"exact"},{"name":"pentose-phosphate pathway","type":"exact"}],"termid":"GO:0006098","terms_by_termid":{"GO:0009051":null,"GO:0009052":null,"GO:0043456":null,"GO:1905857":null}}


id: PR:O14062
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- rps1201 gene.","definition_xrefs":["PRO:DNx","UniProtKB:O14062"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"40S ribosomal protein S12-A (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC962.04","synonyms":[{"name":"Spom972h-rps1201","type":"exact"}],"termid":"PR:O14062"}


id: PBO:0078412
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-Gly (CCC) 6-1","termid":"PBO:0078412"}


id: GO:2001218
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that stops, prevents or reduces the frequency, rate or extent of S/G2 transition of mitotic cell cycle.","definition_xrefs":["GOC:mtg_cell_cycle","GOC:obol"],"gene_count":0,"genotype_count":0,"name":"obsolete negative regulation of S/G2 transition of mitotic cell cycle (obsolete GO:2001218)","synonyms":[{"name":"negative regulation of S/G2 transition of mitotic cell cycle","type":"exact"}],"termid":"GO:2001218"}


id: GO:0048031
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a trisaccharide. Trisaccharides are sugars composed of three monosaccharide units.","definition_xrefs":["GOC:jid"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oligosaccharide binding","termid":"GO:0070492"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0005488"],"is_obsolete":false,"name":"trisaccharide binding","termid":"GO:0048031"}


id: PBO:0030465
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_gross_chromosomal_rearrangement","termid":"PBO:0030465"}


id: GO:0005665
data:
  {"annotated_genes":["SJAG_02101","SJAG_04559","SJAG_04261","SJAG_02506","SJAG_04894","SJAG_01713","SJAG_01436","SJAG_00119","SJAG_04030","SJAG_01765","SJAG_02070","SJAG_01313","SJAG_00458"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[87576,89536,89721,92509,96786,97565,99157,101662,103598,105200,108846,109846,110723],"is_not":false,"summary":null,"term":"GO:0005665"}]},"cv_name":"cellular_component","definition":"RNA polymerase II, one of three nuclear DNA-directed RNA polymerases found in all eukaryotes, is a multisubunit complex; typically it produces mRNAs, snoRNAs, and some of the snRNAs. Two large subunits comprise the most conserved portion including the catalytic site and share similarity with other eukaryotic and bacterial multisubunit RNA polymerases. The largest subunit of RNA polymerase II contains an essential carboxyl-terminal domain (CTD) composed of a variable number of heptapeptide repeats (YSPTSPS). The remainder of the complex is composed of smaller subunits (generally ten or more), some of which are also found in RNA polymerases I and III. Although the core is competent to mediate ribonucleic acid synthesis, it requires additional factors to select the appropriate template.","definition_xrefs":["GOC:mtg_sensu","GOC:krc"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nuclear DNA-directed RNA polymerase complex","termid":"GO:0055029"},{"relation_name":"part_of","term_name":"RNA polymerase II, holoenzyme","termid":"GO:0016591"}],"gene_count":13,"genes_by_uniquename":{"SJAG_00119":null,"SJAG_00458":null,"SJAG_01313":null,"SJAG_01436":null,"SJAG_01713":null,"SJAG_01765":null,"SJAG_02070":null,"SJAG_02101":null,"SJAG_02506":null,"SJAG_04030":null,"SJAG_04261":null,"SJAG_04559":null,"SJAG_04894":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005634"},{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005654"},{"rel_name":"part_of","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0005575","GO:0005634","GO:0032991","GO:0005654"],"is_obsolete":false,"name":"RNA polymerase II, core complex","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"DNA-directed RNA polymerase II, core complex","type":"exact"},{"name":"RNA polymerase II complex","type":"broad"},{"name":"RNAP II complex","type":"broad"}],"termid":"GO:0005665","terms_by_termid":{"GO:0005665":null}}


id: GO:0010926
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The process pertaining to the initial formation of an anatomical structure from unspecified parts. This process begins with the specific processes that contribute to the appearance of the discrete structure and ends when the structure is recognizable. An anatomical structure is any biological entity that occupies space and is distinguished from its surroundings. Anatomical structures can be macroscopic such as a carpel, or microscopic such as an acrosome.","definition_xrefs":["GOC:tb","GOC:dph"],"gene_count":0,"genotype_count":0,"name":"obsolete anatomical structure formation (obsolete GO:0010926)","synonyms":[{"name":"anatomical structure formation","type":"exact"}],"termid":"GO:0010926"}


id: PBO:0071401
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L31 pseudogene 7","termid":"PBO:0071401"}


id: PBO:0065251
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"proline rich 20D","termid":"PBO:0065251"}


id: PBO:0087339
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Specific translational activator for the COX1 mRNA; binds to the COX1 mRNA; also influences stability of intron-containing COX1 primary transcripts; localizes to the mitochondrial inner membrane; contains 12 pentatricopeptide repeats (PPRs)","termid":"PBO:0087339"}


id: PBO:0031400
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_chromosome_segregation","termid":"PBO:0031400"}


id: PBO:0050028
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"major histocompatibility complex, class II, DQ beta 1","termid":"PBO:0050028"}


id: PBO:0032716
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_error-free_translesion_synthesis","termid":"PBO:0032716"}


id: GO:0008790
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: D-arabinose = D-ribulose.","definition_xrefs":["EC:5.3.1.3"],"direct_ancestors":[{"relation_name":"is_a","term_name":"intramolecular oxidoreductase activity, interconverting aldoses and ketoses","termid":"GO:0016861"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016853"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016853"],"is_obsolete":false,"name":"arabinose isomerase activity","secondary_identifiers":["MetaCyc:DARABISOM-RXN","RHEA:13849"],"synonyms":[{"name":"D-arabinose aldose-ketose-isomerase activity","type":"related"},{"name":"D-arabinose isomerase activity","type":"narrow"},{"name":"D-arabinose ketol-isomerase activity","type":"related"},{"name":"D-arabinose(L-fucose) isomerase activity","type":"related"}],"termid":"GO:0008790"}


id: PBO:0028164
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-sensitive_to_mycophenolic_acid","termid":"PBO:0028164"}


id: PBO:0063537
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"proliferation and apoptosis adaptor protein 15","termid":"PBO:0063537"}


id: PBO:0058793
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 7162","termid":"PBO:0058793"}


id: PBO:0038422
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"alpha-2-macroglobulin","termid":"PBO:0038422"}


id: PBO:0030209
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-inviable_vegetative_cell","termid":"PBO:0030209"}


id: PBO:0027652
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-growth_auxotrophic_for_choline","termid":"PBO:0027652"}


id: PBO:0043215
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CDC28 protein kinase regulatory subunit 2","termid":"PBO:0043215"}


id: PBO:0085821
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein of unknown function; expressed during sporulation; not required for sporulation, but gene exhibits genetic interactions with other genes required for sporulation","termid":"PBO:0085821"}


id: GO:0036324
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The series of molecular signals initiated by a ligand binding to a vascular endothelial growth factor receptor-2 (VEGFR-2) on the surface of a target cell, and ending with the regulation of a downstream cellular process, e.g. transcription.","definition_xrefs":["GOC:uh","Wikipedia:VEGF_receptors","Wikipedia:Kinase_insert_domain_receptor","PMID:12967471","GOC:bf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"vascular endothelial growth factor receptor signaling pathway","termid":"GO:0048010"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"vascular endothelial growth factor receptor-2 signaling pathway","synonyms":[{"name":"FLK-1 signaling pathway","type":"exact"},{"name":"KDR signaling pathway","type":"exact"},{"name":"VEGFR-2 signaling pathway","type":"exact"},{"name":"VEGFR2 signaling pathway","type":"exact"}],"termid":"GO:0036324"}


id: GO:1900342
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of methane biosynthetic process from dimethyl sulfide.","definition_xrefs":["GOC:TermGenie","GOC:mengo_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of sulfur metabolic process","termid":"GO:0042762"},{"relation_name":"is_a","term_name":"regulation of cellular respiration","termid":"GO:0043457"},{"relation_name":"is_a","term_name":"regulation of alkane biosynthetic process","termid":"GO:1901577"},{"relation_name":"regulates","term_name":"methane biosynthetic process from dimethyl sulfide","termid":"GO:2001131"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0006790"},{"rel_name":"regulates","termid":"GO:0006091"}],"interesting_parent_ids":["GO:0006091","GO:0008150","GO:0006790"],"is_obsolete":false,"name":"regulation of methane biosynthetic process from dimethyl sulfide","termid":"GO:1900342"}


id: PATO:0002489
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"Overlap with quality inhering in a bearer by virtue of the bearer's being positioned under another entity so as to be covered by some portion of it.","definition_xrefs":["PATOC:WD"],"direct_ancestors":[{"relation_name":"is_a","term_name":"overlap with","termid":"PATO:0001590"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"overlapped by","termid":"PATO:0002489"}


id: GO:0003746
data:
  {"annotated_genes":["SJAG_02017","SJAG_02180","SJAG_05332","SJAG_02189","SJAG_04157","SJAG_05271","SJAG_02493","SJAG_02738","SJAG_02353","SJAG_02812","SJAG_02601","SJAG_04862","SJAG_02171","SJAG_01438","SJAG_03461","SJAG_01851"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[89238,89239,89240,90791,90792,91016,94029,94030,98694,103071,105094,105095,107492,108128,108398,108399,108400,108871,110781,113053,113418,114574,114575,114576,115046,115047],"is_not":false,"summary":null,"term":"GO:0003746"}]},"cv_name":"molecular_function","definition":"Functions in chain elongation during polypeptide synthesis at the ribosome.","definition_xrefs":["ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"translation factor activity, RNA binding","termid":"GO:0008135"}],"gene_count":16,"genes_by_uniquename":{"SJAG_01438":null,"SJAG_01851":null,"SJAG_02017":null,"SJAG_02171":null,"SJAG_02180":null,"SJAG_02189":null,"SJAG_02353":null,"SJAG_02493":null,"SJAG_02601":null,"SJAG_02738":null,"SJAG_02812":null,"SJAG_03461":null,"SJAG_04157":null,"SJAG_04862":null,"SJAG_05271":null,"SJAG_05332":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0045182"},{"rel_name":"is_a","termid":"GO:0005488"}],"interesting_parent_ids":["GO:0003674","GO:0045182","GO:0005488"],"is_obsolete":false,"name":"translation elongation factor activity","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["GO:0008183","GO:0008182","Reactome:R-HSA-192841","Reactome:R-HSA-192704"],"termid":"GO:0003746","terms_by_termid":{"GO:0003746":null}}


id: PBO:0089599
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"phosphomethylpyrimidine kinase Thi20","termid":"PBO:0089599"}


id: PBO:0027146
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_farnesyltranstransferase_activity","termid":"PBO:0027146"}


id: MOD:00358
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-histidine residue to 3'-(8alpha-FMN)-L-histidine.","definition_xrefs":["Unimod:409#H","RESID:AA0353","PubMed:12417325"],"direct_ancestors":[{"relation_name":"is_a","term_name":"FMN modified residue","termid":"MOD:00896"},{"relation_name":"is_a","term_name":"modified L-histidine residue","termid":"MOD:00909"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"3'-(8alpha-FMN)-L-histidine","synonyms":[{"name":"(S)-2-amino-3-(3-[8alpha riboflavin 5'-dihydrogen phosphate]imidazol-4-yl)propanoic acid","type":"exact"},{"name":"3'-(8alpha-FMN)-L-histidine","type":"exact"},{"name":"8alpha-(N(delta)-histidyl)FMN","type":"exact"},{"name":"8alpha-(N3'-histidyl)FMN","type":"exact"},{"name":"FMNH","type":"related"},{"name":"N(pi)-(8alpha-FMN)-histidine","type":"exact"},{"name":"Npros8aFMNHis","type":"exact"},{"name":"flavin mononucleotide","type":"related"},{"name":"pros-(8alpha-FMN)-histidine","type":"exact"}],"termid":"MOD:00358"}


id: FYPO:0004304
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which the observed rate of a phosphatase activity is decreased.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased catalytic activity","termid":"FYPO:0000663"},{"relation_name":"is_a","term_name":"abnormal phosphatase activity","termid":"FYPO:0004302"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0000661"},{"rel_name":"is_a","termid":"FYPO:0000707"},{"rel_name":"is_a","termid":"FYPO:0000654"}],"interesting_parent_ids":["FYPO:0000661","FYPO:0000707","FYPO:0000654","FYPO:0001985","FYPO:0000652"],"is_obsolete":false,"name":"decreased phosphatase activity","synonyms":[{"name":"reduced phosphatase activity","type":"exact"}],"termid":"FYPO:0004304"}


id: PBO:0053705
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 907","termid":"PBO:0053705"}


id: PBO:0076792
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tubulin epsilon and delta complex 2","termid":"PBO:0076792"}


id: GO:0090389
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The creation of a phagolysosome from a phagosome and a lysosome as a part of apoptotic cell clearance.","definition_xrefs":["GOC:tb","GOC:kmv"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phagosome-lysosome fusion","termid":"GO:0090385"},{"relation_name":"part_of","term_name":"phagolysosome assembly involved in apoptotic cell clearance","termid":"GO:0090387"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0061024"},{"rel_name":"part_of","termid":"GO:0006810"},{"rel_name":"part_of","termid":"GO:0044085"},{"rel_name":"part_of","termid":"GO:0016192"}],"interesting_parent_ids":["GO:0044085","GO:0061024","GO:0016192","GO:0008150","GO:0006810"],"is_obsolete":false,"name":"phagosome-lysosome fusion involved in apoptotic cell clearance","termid":"GO:0090389"}


id: GO:0033314
data:
  {"annotated_genes":["SJAG_03026","SJAG_01605","SJAG_02266","SJAG_01044","SJAG_02563","SJAG_01010","SJAG_04287","SJAG_02771","SJAG_02074","SJAG_00364","SJAG_03927","SJAG_01205","SJAG_02098","SJAG_03695","SJAG_03160","SJAG_04671","SJAG_01076"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[84619,86963,88091,89575,89596,94939,95105,96297,99140,102501,103744,105251,108012,112145,112901,113197,113360],"is_not":false,"summary":null,"term":"GO:0033314"}]},"cv_name":"biological_process","definition":"A signal transduction process that contributes to a mitotic DNA replication checkpoint.","definition_xrefs":["GOC:mtg_cell_cycle"],"direct_ancestors":[{"relation_name":"is_a","term_name":"DNA replication checkpoint signaling","termid":"GO:0000076"},{"relation_name":"is_a","term_name":"mitotic DNA integrity checkpoint signaling","termid":"GO:0044774"},{"relation_name":"is_a","term_name":"mitotic G2/M transition checkpoint","termid":"GO:0044818"}],"gene_count":17,"genes_by_uniquename":{"SJAG_00364":null,"SJAG_01010":null,"SJAG_01044":null,"SJAG_01076":null,"SJAG_01205":null,"SJAG_01605":null,"SJAG_02074":null,"SJAG_02098":null,"SJAG_02266":null,"SJAG_02563":null,"SJAG_02771":null,"SJAG_03026":null,"SJAG_03160":null,"SJAG_03695":null,"SJAG_03927":null,"SJAG_04287":null,"SJAG_04671":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0023052"},{"rel_name":"regulates","termid":"GO:0044772"},{"rel_name":"negatively_regulates","termid":"GO:0007049"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0007049"},{"rel_name":"regulates","termid":"GO:0007049"},{"rel_name":"negatively_regulates","termid":"GO:0044772"}],"interesting_parent_ids":["GO:0008150","GO:0023052","GO:0044772","GO:0007049"],"is_obsolete":false,"name":"mitotic DNA replication checkpoint signaling","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["GO:0031574","GO:0072446","GO:0072459","GO:0072443"],"synonyms":[{"name":"S-M DNA replication checkpoint","type":"exact"},{"name":"S-M checkpoint","type":"exact"},{"name":"S-phase checkpoint","type":"broad"},{"name":"mitotic DNA replication checkpoint","type":"exact"},{"name":"mitotic cell cycle DNA replication checkpoint","type":"exact"},{"name":"signal transduction involved in S-M checkpoint","type":"exact"},{"name":"signal transduction involved in mitotic DNA replication checkpoint","type":"narrow"},{"name":"signal transduction involved in mitotic G2/M transition decatenation checkpoint","type":"related"}],"termid":"GO:0033314","terms_by_termid":{"GO:0033314":null}}


id: PBO:0074170
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"solute carrier family 36 member 1","termid":"PBO:0074170"}


id: GO:0016354
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. (Was not defined before being made obsolete).","definition_xrefs":["GOC:go_curators"],"gene_count":0,"genotype_count":0,"name":"obsolete cyclodiene susceptibility/resistance (obsolete GO:0016354)","synonyms":[{"name":"cyclodiene susceptibility/resistance","type":"exact"}],"termid":"GO:0016354"}


id: PBO:0056863
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MHC class I polypeptide-related sequence A","termid":"PBO:0056863"}


id: PR:Q1MTR3
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPBC1685.14c gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q1MTR3"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"vacuolar import and degradation protein 27 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC1685.14c","synonyms":[{"name":"Spom972h-SPBC1685.14c","type":"exact"}],"termid":"PR:Q1MTR3"}


id: GO:0051665
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process in which membrane rafts are transported to, or maintained in, a specific location. Membrane rafts are small (10-200 nm), heterogeneous, highly dynamic, sterol- and sphingolipid-enriched membrane domains that compartmentalize cellular processes.","definition_xrefs":["PMID:16645198","GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"localization within membrane","termid":"GO:0051668"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0051179"}],"interesting_parent_ids":["GO:0051179","GO:0008150"],"is_obsolete":false,"name":"membrane raft localization","synonyms":[{"name":"establishment and maintenance of membrane raft localization","type":"exact"},{"name":"lipid raft localization","type":"exact"},{"name":"membrane raft localisation","type":"exact"}],"termid":"GO:0051665"}


