# terms

id: PBO:0071851
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein S2 pseudogene 46","termid":"PBO:0071851"}


id: PBO:0080027
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ubiquitin specific peptidase 17 like family member 13","termid":"PBO:0080027"}


id: GO:0106298
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of resolvin family 13-series, hydroxy fatty acids derived from docosapentaenoic acid.","definition_xrefs":["PMID:26236990"],"direct_ancestors":[{"relation_name":"is_a","term_name":"resolvin biosynthetic process","termid":"GO:0106295"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0006629"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0006629","GO:0044281"],"is_obsolete":false,"name":"13-series resolvin biosynthetic process","termid":"GO:0106298"}


id: PBO:0038276
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase allele types","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nucleotide_insertion","termid":"PBO:0038276"}


id: GO:0021918
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that modulates the frequency, rate or extent of transcription from an RNA polymerase II promoter that contributes to the commitment of spinal cord motor neurons to specific motor neuron types along the anterior-posterior axis.","definition_xrefs":["GOC:dgh","GOC:dph","GOC:jid","GOC:cls","GO_REF:0000021","PMID:11262869"],"gene_count":0,"genotype_count":0,"name":"obsolete regulation of transcription from RNA polymerase II promoter involved in somatic motor neuron fate commitment (obsolete GO:0021918)","termid":"GO:0021918"}


id: GO:0015467
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Enables the transmembrane transfer of a potassium ion by an inwardly-rectifying voltage-gated channel, where the inward rectification is due to a voltage-dependent block of the channel pore by a G protein. An inwardly rectifying current-voltage relation is one where at any given driving force the inward flow of K+ ions exceeds the outward flow for the opposite driving force.","definition_xrefs":["GOC:cb","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"inward rectifier potassium channel activity","termid":"GO:0005242"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0005215","GO:0022857","GO:0003674"],"is_obsolete":false,"name":"G-protein activated inward rectifier potassium channel activity","secondary_identifiers":["GO:0015273","Reactome:R-HSA-1013020"],"synonyms":[{"name":"G protein activated inward rectifier potassium channel activity","type":"exact"},{"name":"G protein enhanced inward rectifier potassium channel activity","type":"exact"},{"name":"G-protein enhanced inward rectifier potassium channel activity","type":"exact"},{"name":"G-protein-activated inward rectifier potassium channel activity","type":"exact"},{"name":"G-protein-enhanced inward rectifier potassium channel activity","type":"exact"}],"termid":"GO:0015467"}


id: PBO:0047577
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"FGFR1 oncogene partner 2","termid":"PBO:0047577"}


id: PBO:0087731
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Subunit of the Shu complex (aka PCSS complex); Shu complex also includes Psy3, Shu1, Shu2, and promotes error-free DNA repair; Shu complex mediates inhibition of Srs2p anti-recombinase function; promotes formation of Rad51p filaments; Psy3p and Csm2p contain similar DNA-binding regions which work together to form a single DNA binding site; required for accurate chromosome segregation during meiosis","termid":"PBO:0087731"}


id: PR:P36618
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- cdc16 gene.","definition_xrefs":["PRO:DNx","UniProtKB:P36618"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cell division control protein 16 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC6F6.08c","synonyms":[{"name":"Spom972h-cdc16","type":"exact"}],"termid":"PR:P36618"}


id: GO:0140049
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of endocardial cushion to mesenchymal transition.","definition_xrefs":["GOC:BHF_miRNA","GOC:rph","PMID:21778427","GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of cardiac epithelial to mesenchymal transition","termid":"GO:0062042"},{"relation_name":"regulates","term_name":"endocardial cushion to mesenchymal transition","termid":"GO:0090500"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of endocardial cushion to mesenchymal transition","termid":"GO:0140049"}


id: PBO:0040887
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"BMP8B antisense RNA 1","termid":"PBO:0040887"}


id: GO:0047014
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: sn-glycerol 3-phosphate + NADP+ = D-glyceraldehyde 3-phosphate + H+ + NADPH.","definition_xrefs":["EC:1.1.1.177","RHEA:19773"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor","termid":"GO:0016616"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0016491","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"glycerol-3-phosphate 1-dehydrogenase [NADP+] activity","secondary_identifiers":["KEGG_REACTION:R00845","MetaCyc:1.1.1.177-RXN"],"synonyms":[{"name":"L-glycerol 3-phosphate:NADP oxidoreductase activity","type":"related"},{"name":"NADPH-dependent glycerin-3-phosphate dehydrogenase activity","type":"related"},{"name":"glycerin-3-phosphate dehydrogenase activity","type":"related"},{"name":"glycerol phosphate (nicotinamide adenine dinucleotide phosphate) dehydrogenase activity","type":"related"},{"name":"sn-glycerol-3-phosphate:NADP+ 1-oxidoreductase activity","type":"related"}],"termid":"GO:0047014"}


id: PBO:0089497
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"coenzyme A diphosphatase","termid":"PBO:0089497"}


id: GO:0075234
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process involved in the directed movement of a zoospore on or near its host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction.","definition_xrefs":["GOC:pamgo_curators"],"gene_count":0,"genotype_count":0,"name":"obsolete zoospore movement on or near host (obsolete GO:0075234)","synonyms":[{"name":"zoospore motility on or near host","type":"exact"}],"termid":"GO:0075234"}


id: FYPO:0007637
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which chromatin moves within the nucleus to a lower extent than normal.","definition_xrefs":["PomBase:mah","PMID:33434270"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal chromatin organization during vegetative growth","termid":"FYPO:0001352"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000641"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0001985","FYPO:0000002","FYPO:0005447","FYPO:0000641"],"is_obsolete":false,"name":"decreased chromatin mobility","synonyms":[{"name":"decreased chromatin mobility during mitotic cell cycle","type":"related"},{"name":"decreased chromatin mobility during vegetative growth","type":"exact"},{"name":"decreased chromatin motility","type":"exact"},{"name":"decreased chromatin movement","type":"exact"},{"name":"reduced chromatin mobility","type":"exact"}],"termid":"FYPO:0007637"}


id: GO:0106180
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the translocation of hydrons (hydron being the general name for H+ in its natural abundance).","definition_xrefs":["GOC:hjd"],"gene_count":0,"genotype_count":0,"name":"obsolete translocase activty of hydrons (obsolete GO:0106180)","secondary_identifiers":["EC:7.1.-.-"],"termid":"GO:0106180"}


id: PBO:0012010
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosome biogenesis protein, G-patch domain, PINX1 family (predicted)","termid":"PBO:0012010"}


id: PBO:0085416
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Plasma membrane transporter for choline, ethanolamine, and carnitine; involved in the uptake of nitrogen mustard and the uptake of glycine betaine during hypersaline stress; co-regulated with phospholipid biosynthetic genes and negatively regulated by choline and myo-inositol","termid":"PBO:0085416"}


id: GO:0021689
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process that contributes to the act of creating the structural organization of the cerebellar molecular layer. This process pertains to the physical shaping of a rudimentary structure. The molecular layer is the outermost layer of the cerebellar cortex. It contains the parallel fibers of the granule cells, interneurons such as stellate and basket cells, and the dendrites of the underlying Purkinje cells.","definition_xrefs":["GOC:cls","GOC:dgh","GO_REF:0000021","GOC:jid","ISBN:0838580343","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"anatomical structure arrangement","termid":"GO:0048532"},{"relation_name":"part_of","term_name":"cerebellar molecular layer morphogenesis","termid":"GO:0021687"},{"relation_name":"part_of","term_name":"cerebellar cortex structural organization","termid":"GO:0021698"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cerebellar molecular layer structural organization","synonyms":[{"name":"cerebellar molecular layer structural organisation","type":"exact"}],"termid":"GO:0021689"}


id: FYPO:0005753
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of one or more 2'-deoxyribonucleoside triphosphates (dNTPs) measured in a cell is normal (i.e. indistinguishable from wild type).","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal cellular phosphorus level","termid":"FYPO:0001543"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001312"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000257"}],"interesting_parent_ids":["FYPO:0001312","FYPO:0001320","FYPO:0000002","FYPO:0000257"],"is_obsolete":false,"name":"normal cellular dNTP level","synonyms":[{"name":"normal cellular dNTP level during mitotic cell cycle","type":"related"},{"name":"normal cellular dNTP level during vegetative growth","type":"exact"},{"name":"normal dNTP accumulation","type":"related"}],"termid":"FYPO:0005753"}


id: PBO:0064963
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PRAME family member 15","termid":"PBO:0064963"}


id: PBO:0004331
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"verprolin","termid":"PBO:0004331"}


id: PBO:0070759
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L10 pseudogene 15","termid":"PBO:0070759"}


id: PBO:0045370
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"diphthamide biosynthesis 5","termid":"PBO:0045370"}


id: PBO:0049282
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glutathione S-transferase alpha 1","termid":"PBO:0049282"}


id: PBO:0062397
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 7 subfamily E member 19 pseudogene","termid":"PBO:0062397"}


id: PBO:0079324
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"testis-specific transcript, Y-linked 13B","termid":"PBO:0079324"}


id: PBO:0082279
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Anti-repressor that increases 2 micron plasmid copy number; increases 2 micron plasmid copy number by relieving repression of the FLP1 site-specific recombinase caused by the Rep1-Rep2p trascription regulator; also itself repressed by the Rep1p-Rep2p complex","termid":"PBO:0082279"}


id: GO:0005009
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Combining with insulin receptor ligand and transmitting the signal across the plasma membrane to initiate a change in cell activity.","definition_xrefs":["ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"transmembrane receptor protein tyrosine kinase activity","termid":"GO:0004714"},{"relation_name":"is_a","term_name":"protein-hormone receptor activity","termid":"GO:0016500"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0004672"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0016301"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0038023"},{"rel_name":"is_a","termid":"GO:0140096"}],"interesting_parent_ids":["GO:0003674","GO:0016740","GO:0016301","GO:0003824","GO:0140096","GO:0038023","GO:0004672"],"is_obsolete":false,"name":"insulin receptor activity","secondary_identifiers":["Reactome:R-HSA-74715"],"synonyms":[{"name":"insulin-activated receptor activity","type":"exact"}],"termid":"GO:0005009"}


id: GO:0001503
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The formation of bone or of a bony substance, or the conversion of fibrous tissue or of cartilage into bone or a bony substance.","definition_xrefs":["PMID:17572649","GOC:mtg_mpo"],"direct_ancestors":[{"relation_name":"is_a","term_name":"multicellular organismal process","termid":"GO:0032501"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"ossification","secondary_identifiers":["Wikipedia:Ossification"],"synonyms":[{"name":"bone biosynthesis","type":"exact"},{"name":"bone formation","type":"exact"},{"name":"osteogenesis","type":"exact"}],"termid":"GO:0001503"}


id: GO:1990573
data:
  {"annotated_genes":["SJAG_02883","SJAG_03401","SJAG_01353"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[85011,92696,101567],"is_not":false,"summary":null,"term":"GO:1990573"}]},"cv_name":"biological_process","definition":"The directed movement of potassium ions from outside of a cell, across the plasma membrane and into the cytosol.","definition_xrefs":["PMID:9139127"],"direct_ancestors":[{"relation_name":"is_a","term_name":"potassium ion transmembrane transport","termid":"GO:0071805"},{"relation_name":"is_a","term_name":"inorganic cation import across plasma membrane","termid":"GO:0098659"}],"gene_count":3,"genes_by_uniquename":{"SJAG_01353":null,"SJAG_02883":null,"SJAG_03401":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0055085"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0051179"}],"interesting_parent_ids":["GO:0051179","GO:0006810","GO:0008150","GO:0055085"],"is_obsolete":false,"name":"potassium ion import across plasma membrane","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["GO:0010107"],"synonyms":[{"name":"potassium import","type":"broad"},{"name":"potassium ion import","type":"broad"},{"name":"potassium ion uptake","type":"broad"}],"termid":"GO:1990573","terms_by_termid":{"GO:1990573":null}}


id: PBO:0062309
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 5 subfamily T member 1","termid":"PBO:0062309"}


id: PBO:0059881
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MT-ND1 pseudogene 4","termid":"PBO:0059881"}


id: PBO:0038611
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"acyl-CoA binding domain containing 7","termid":"PBO:0038611"}


id: PBO:0086677
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Putative protein of unknown function; identified by gene-trapping, microarray analysis, and genome-wide homology searches; mRNA identified as translated by ribosome profiling data; SWAT-GFP, seamless-GFP and mCherry fusion proteins localize to the endoplasmic reticulum; partially overlaps the dubious ORF YBR126W-B","termid":"PBO:0086677"}


id: GO:2000899
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of a xyloglucan.","definition_xrefs":["GOC:mengo_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"glucan catabolic process","termid":"GO:0009251"},{"relation_name":"is_a","term_name":"xyloglucan metabolic process","termid":"GO:0010411"},{"relation_name":"is_a","term_name":"hemicellulose catabolic process","termid":"GO:2000895"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005975"},{"rel_name":"part_of","termid":"GO:0071554"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0005975","GO:0071554"],"is_obsolete":false,"name":"xyloglucan catabolic process","synonyms":[{"name":"xyloglucan catabolism","type":"exact"}],"termid":"GO:2000899"}


id: PBO:0051155
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"immunoglobulin heavy variable 3-35 (non-functional)","termid":"PBO:0051155"}


id: PBO:0061998
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 2 subfamily G member 1 pseudogene","termid":"PBO:0061998"}


id: GO:1902294
data:
  {"annotated_genes":["SJAG_00998"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[87696],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1902979"}]},"cv_name":"biological_process","definition":"Any DNA replication termination that is involved in cell cycle DNA replication.","definition_xrefs":["GOC:mtg_cell_cycle","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"DNA replication termination","termid":"GO:0006274"},{"relation_name":"is_a","term_name":"cell cycle process","termid":"GO:0022402"},{"relation_name":"part_of","term_name":"cell cycle DNA replication","termid":"GO:0044786"}],"gene_count":1,"genes_by_uniquename":{"SJAG_00998":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0006259"},{"rel_name":"part_of","termid":"GO:0006260"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006259"},{"rel_name":"part_of","termid":"GO:0007049"}],"interesting_parent_ids":["GO:0007049","GO:0006259","GO:0006260","GO:0008150"],"is_obsolete":false,"name":"cell cycle DNA replication termination","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"DNA replication termination involved in cell cycle DNA replication","type":"exact"}],"termid":"GO:1902294","terms_by_termid":{"GO:1902979":null}}


id: PBO:0071922
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein S3 pseudogene 7","termid":"PBO:0071922"}


id: PBO:0073252
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SEPTIN4 antisense RNA 1","termid":"PBO:0073252"}


id: PBO:0051522
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"interleukin 1 receptor accessory protein","termid":"PBO:0051522"}


id: GO:0102210
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: H2O + a rhamnogalacturonan type I = [rhamnogalacturonan I oligosaccharide]-alpha-L-rhamnose + 4-deoxy-4,5-unsaturated D-galactopyranosyluronate-[rhamnogalacturonan I oligosaccharide].","definition_xrefs":["EC:4.2.2.23","GOC:pz"],"direct_ancestors":[{"relation_name":"is_a","term_name":"carbon-oxygen lyase activity, acting on polysaccharides","termid":"GO:0016837"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016829"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016829"],"is_obsolete":false,"name":"rhamnogalacturonan endolyase activity","secondary_identifiers":["MetaCyc:RXN-12173"],"termid":"GO:0102210"}


id: FYPO:0004786
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to the Golgi apparatus is decreased.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal protein localization to Golgi apparatus","termid":"FYPO:0003936"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000138"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0005447","FYPO:0000002","FYPO:0000138","FYPO:0001985"],"is_obsolete":false,"name":"decreased protein localization to Golgi apparatus","synonyms":[{"name":"decreased protein localisation to Golgi apparatus","type":"exact"},{"name":"decreased protein localization to Golgi apparatus during mitotic cell cycle","type":"related"},{"name":"decreased protein localization to Golgi apparatus during vegetative growth","type":"exact"},{"name":"reduced protein localization to Golgi apparatus","type":"exact"}],"termid":"FYPO:0004786"}


id: PBO:0064734
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"peptidylprolyl isomerase A pseudogene 70","termid":"PBO:0064734"}


id: GO:0046663
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which a relatively unspecialized cell acquires specialized features of a leading edge cell, the dorsal-most cells of the epidermis that migrates during dorsal closure.","definition_xrefs":["GOC:ai","PMID:12147138"],"direct_ancestors":[{"relation_name":"is_a","term_name":"leading edge cell differentiation","termid":"GO:0035026"},{"relation_name":"part_of","term_name":"initiation of dorsal closure","termid":"GO:0007392"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"dorsal closure, leading edge cell differentiation","termid":"GO:0046663"}


id: GO:0009747
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The series of molecular signals mediated by hexose and dependent on the detection of hexokinase.","definition_xrefs":["GOC:sm","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hexose mediated signaling","termid":"GO:0009757"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"hexokinase-dependent signaling","synonyms":[{"name":"hexokinase-dependent signalling","type":"exact"}],"termid":"GO:0009747"}


id: GO:0018667
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: cyclohexanone + NADPH + H+ + O2 = 6-hexanolide + NADP+ + H2O.","definition_xrefs":["EC:1.14.13.22"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen","termid":"GO:0016709"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016491"],"is_obsolete":false,"name":"cyclohexanone monooxygenase activity","secondary_identifiers":["UM-BBD_reactionID:r0166","MetaCyc:CYCLOHEXANONE-MONOOXYGENASE-RXN","RHEA:24068"],"synonyms":[{"name":"cyclohexanone 1,2-monooxygenase activity","type":"exact"},{"name":"cyclohexanone oxygenase activity","type":"related"},{"name":"cyclohexanone:NADPH:oxygen oxidoreductase (6-hydroxylating, 1,2-lactonizing) activity","type":"related"},{"name":"cyclohexanone:NADPH:oxygen oxidoreductase (lactone-forming)","type":"related"}],"termid":"GO:0018667"}


id: GO:0062052
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The sequence of events that initiates (or primes) the synthesis of semi-crystalline starch granules within photosynthetic chloroplasts or non-photosynthetic amyloplasts.","definition_xrefs":["PMID:28684429"],"direct_ancestors":[{"relation_name":"is_a","term_name":"starch biosynthetic process","termid":"GO:0019252"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0005975"}],"interesting_parent_ids":["GO:0008150","GO:0005975"],"is_obsolete":false,"name":"starch granule initiation","termid":"GO:0062052"}


id: PBO:0084325
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Karyopherin, responsible for nuclear import of specific proteins; cargoes include Spt15p, Sua7p, histones H2A and H2B, and Nap1p; amino terminus shows similarity to those of other importins, particularly Cse1p; localization is primarily nuclear; function is regulated by sumoylation; protein abundance increases in response to DNA replication stress","termid":"PBO:0084325"}


id: PBO:0059458
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"minisatellite binding protein 2","termid":"PBO:0059458"}


id: GO:0045542
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of cholesterol.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of cholesterol biosynthetic process","termid":"GO:0045540"},{"relation_name":"is_a","term_name":"positive regulation of cholesterol metabolic process","termid":"GO:0090205"},{"relation_name":"is_a","term_name":"positive regulation of sterol biosynthetic process","termid":"GO:0106120"},{"relation_name":"is_a","term_name":"positive regulation of alcohol biosynthetic process","termid":"GO:1902932"},{"relation_name":"positively_regulates","term_name":"cholesterol biosynthetic process","termid":"GO:0006695"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"positively_regulates","termid":"GO:0006629"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0044281"},{"rel_name":"regulates","termid":"GO:0006629"},{"rel_name":"positively_regulates","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0044281","GO:0006629","GO:0008150"],"is_obsolete":false,"name":"positive regulation of cholesterol biosynthetic process","synonyms":[{"name":"activation of cholesterol biosynthetic process","type":"narrow"},{"name":"positive regulation of cholesterol anabolism","type":"exact"},{"name":"positive regulation of cholesterol biosynthesis","type":"exact"},{"name":"positive regulation of cholesterol formation","type":"exact"},{"name":"positive regulation of cholesterol synthesis","type":"exact"},{"name":"stimulation of cholesterol biosynthetic process","type":"narrow"},{"name":"up regulation of cholesterol biosynthetic process","type":"exact"},{"name":"up-regulation of cholesterol biosynthetic process","type":"exact"},{"name":"upregulation of cholesterol biosynthetic process","type":"exact"}],"termid":"GO:0045542"}


id: GO:0009294
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The direct uptake and incorporation of exogenous genetic material (DNA or RNA) into a cell from its surroundings through the cell envelope.","definition_xrefs":["PMID:27826682","PMID:12706993","PMID:24509783"],"direct_ancestors":[{"relation_name":"is_a","term_name":"horizontal gene transfer","termid":"GO:0009292"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"DNA-mediated transformation","synonyms":[{"name":"DNA mediated transformation","type":"exact"}],"termid":"GO:0009294"}


id: PBO:0054758
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2169","termid":"PBO:0054758"}


id: PBO:0030627
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-loss_of_viability_upon_nitrogen_starvation","termid":"PBO:0030627"}


id: FYPO:0007632
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the acetylation of lysine at position 16 of histone H4 occurs to a greater extent than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased histone H4 acetylation during vegetative growth","termid":"FYPO:0002365"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0002274"},{"rel_name":"is_a","termid":"FYPO:0002494"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0000002","FYPO:0001985","FYPO:0002274","FYPO:0002494","FYPO:0005447"],"is_obsolete":false,"name":"increased histone H4-K16 acetylation during vegetative growth","synonyms":[{"name":"increased histone H4-K16 acetylation during mitotic cell cycle","type":"related"},{"name":"increased histone H4K16 acetylation during vegetative growth","type":"exact"}],"termid":"FYPO:0007632"}


id: PBO:0050019
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"major histocompatibility complex, class II, DO beta","termid":"PBO:0050019"}


id: PBO:0004688
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protein N-terminal amidase Nta1 (predicted)","termid":"PBO:0004688"}


id: PBO:0039276
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ALG1 like 5, pseudogene","termid":"PBO:0039276"}


id: GO:0061185
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that decreases the rate, frequency, or extent of the progression of the dermatome over time, from its initial formation to the mature structure. The dermatome is the portion of a somite that will form skin.","definition_xrefs":["GOC:BHF","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of embryonic development","termid":"GO:0045992"},{"relation_name":"is_a","term_name":"regulation of dermatome development","termid":"GO:0061183"},{"relation_name":"negatively_regulates","term_name":"dermatome development","termid":"GO:0061054"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of dermatome development","termid":"GO:0061185"}


id: GO:0160079
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Combining with glycine and transmitting the signal across the membrane by changing the activity of intracellular G protein signaling.","definition_xrefs":["PMID:36996198"],"direct_ancestors":[{"relation_name":"is_a","term_name":"G protein-coupled neurotransmitter receptor activity","termid":"GO:0099528"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0038023"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0038023","GO:0003674"],"is_obsolete":false,"name":"G protein-coupled glycine receptor activity","synonyms":[{"name":"mGlyR","type":"exact"},{"name":"metabotropic glycine receptor activity","type":"exact"}],"termid":"GO:0160079"}


id: GO:0098005
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Process by which virus heads and tails are attached to each other.","definition_xrefs":["GOC:bm"],"direct_ancestors":[{"relation_name":"is_a","term_name":"viral process","termid":"GO:0016032"},{"relation_name":"part_of","term_name":"virion assembly","termid":"GO:0019068"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"viral head-tail joining","synonyms":[{"name":"phage head tail joining","type":"narrow"},{"name":"virus head-tail joining","type":"exact"}],"termid":"GO:0098005"}


id: PBO:0036391
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"human THOC5 ortholog Tho5 (predicted)","termid":"PBO:0036391"}


id: GO:0110021
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The multiplication or reproduction of cardiac muscle myoblasts, resulting in the expansion of a cardiac muscle myoblast cell population. A cardiac myoblast is a precursor cell that has been committed to a cardiac muscle cell fate but retains the ability to divide and proliferate throughout life.","definition_xrefs":["GOC:BHF","GOC:BHF_miRNA","GOC:rph","PMID:26512644"],"direct_ancestors":[{"relation_name":"is_a","term_name":"myoblast proliferation","termid":"GO:0051450"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cardiac muscle myoblast proliferation","termid":"GO:0110021"}


id: GO:0016941
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Combining with a natriuretic peptide and transmitting the signal to initiate a change in cell activity.","definition_xrefs":["GOC:signaling","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"peptide receptor activity","termid":"GO:0001653"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0038023"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0038023"],"is_obsolete":false,"name":"natriuretic peptide receptor activity","termid":"GO:0016941"}


id: PBO:0046021
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"eukaryotic translation initiation factor 2A pseudogene 2","termid":"PBO:0046021"}


id: GO:0061199
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which force is generated within striated embryonic muscle tissue, resulting in a contraction of the muscle that contributes to the formation of an embryo's characteristic body morphology.","definition_xrefs":["GOC:kmv","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"striated muscle contraction","termid":"GO:0006941"},{"relation_name":"part_of","term_name":"embryonic body morphogenesis","termid":"GO:0010172"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"striated muscle contraction involved in embryonic body morphogenesis","termid":"GO:0061199"}


id: GO:0051238
data:
  {"annotated_genes":["SJAG_04867"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[99634],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006880"}]},"cv_name":"biological_process","definition":"The process of binding or confining metal ions such that they are separated from other components of a biological system.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"maintenance of location","termid":"GO:0051235"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04867":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0051179"],"is_obsolete":false,"name":"sequestering of metal ion","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"metal ion retention","type":"exact"},{"name":"metal ion sequestering","type":"exact"},{"name":"metal ion sequestration","type":"exact"},{"name":"metal ion storage","type":"exact"},{"name":"retention of metal ion","type":"exact"},{"name":"sequestration of metal ion","type":"exact"},{"name":"storage of metal ion","type":"exact"}],"termid":"GO:0051238","terms_by_termid":{"GO:0006880":null}}


id: PBO:0076489
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TARDBP pseudogene 4","termid":"PBO:0076489"}


id: FYPO:0004865
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A physical cellular phenotype observed in the vegetative growth phase of the life cycle in which cells form astral microtubules that are longer than normal during anaphase A. Anaphase A is the stage of mitosis in which the kinetochore microtubules shorten as chromosomes move toward the spindle poles.","definition_xrefs":["GO:0000091","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"long astral microtubules","termid":"FYPO:0004612"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"output_of","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0000054"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0002399"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0001320","FYPO:0000002","FYPO:0002399","FYPO:0000054","FYPO:0005447"],"is_obsolete":false,"name":"long astral microtubules during mitotic anaphase A","synonyms":[{"name":"elongated astral microtubules during mitotic anaphase A","type":"exact"},{"name":"long astral microtubules during anaphase A during mitotic cell cycle","type":"related"},{"name":"long astral microtubules during mitotic anaphase A during vegetative growth","type":"exact"},{"name":"long cytoplasmic astral microtubules during mitotic anaphase A","type":"exact"}],"termid":"FYPO:0004865"}


id: GO:0016169
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to bacteriochlorophyll c, a chlorophyll of photosynthetic bacteria, for example green sulfur bacteria.","definition_xrefs":["ISBN:0192800981"],"direct_ancestors":[{"relation_name":"is_a","term_name":"bacteriochlorophyll binding","termid":"GO:0042314"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005488"}],"interesting_parent_ids":["GO:0003674","GO:0005488"],"is_obsolete":false,"name":"bacteriochlorophyll c binding","termid":"GO:0016169"}


id: PBO:0082883
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Cyclic nucleotide phosphodiesterase; hydrolyzes ADP-ribose 1'', 2''-cyclic phosphate to ADP-ribose 1''-phosphate; may have a role in tRNA splicing; no detectable phenotype is conferred by null mutation or by overexpression; protein abundance increases in response to DNA replication stress","termid":"PBO:0082883"}


id: GO:0044629
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that stops, prevents, or reduces the frequency, rate or extent of complement activation by the classical pathway, in a different organism.","definition_xrefs":["GOC:jl","PMID:20837040"],"gene_count":0,"genotype_count":0,"name":"obsolete negative regulation of complement activation, classical pathway in another organism (obsolete GO:0044629)","synonyms":[{"name":"negative regulation of complement activation, classical pathway in other organism","type":"exact"}],"termid":"GO:0044629"}


id: GO:0003989
data:
  {"annotated_genes":["SJAG_03313"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[94085],"is_not":false,"summary":null,"term":"GO:0003989"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: ATP + acetyl-CoA + HCO3- = ADP + phosphate + malonyl-CoA.","definition_xrefs":["EC:6.4.1.2"],"direct_ancestors":[{"relation_name":"is_a","term_name":"CoA carboxylase activity","termid":"GO:0016421"}],"gene_count":1,"genes_by_uniquename":{"SJAG_03313":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016874"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016874"],"is_obsolete":false,"name":"acetyl-CoA carboxylase activity","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["RHEA:11308","MetaCyc:ACETYL-COA-CARBOXYLTRANSFER-RXN","Reactome:R-HSA-8876889","Reactome:R-HSA-75851","Reactome:R-HSA-200555"],"synonyms":[{"name":"acetyl coenzyme A carboxylase activity","type":"related"},{"name":"acetyl-CoA:carbon-dioxide ligase (ADP-forming)","type":"related"}],"termid":"GO:0003989","terms_by_termid":{"GO:0003989":null}}


id: GO:0102749
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: H+ + dihydrogeranylgeranyl-chlorophyll a + NADPH = tetrahydrogeranylgeranyl-chlorophyll a + NADP.","definition_xrefs":["GOC:pz","EC:1.3.1.-"],"gene_count":0,"genotype_count":0,"name":"obsolete dihydrogeranylgeranyl-chlorophyll a reductase activity (obsolete GO:0102749)","secondary_identifiers":["MetaCyc:RXN-7665"],"termid":"GO:0102749"}


id: PBO:0070376
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"roundabout guidance receptor 2 pseudogene 1","termid":"PBO:0070376"}


id: GO:0120086
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 2-trans,6-trans-farnesyl diphosphate = diphosphate + (3S)-(+)-asterisca-2(9),6-diene.","definition_xrefs":["PMID:27862766"],"direct_ancestors":[{"relation_name":"is_a","term_name":"sesquiterpene synthase activity","termid":"GO:0010334"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016829"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003824","GO:0016829","GO:0003674"],"is_obsolete":false,"name":"(3S)-(+)-asterisca-2(9),6-diene synthase activity","synonyms":[{"name":"asterisca-2(9),6-diene synthase activity","type":"broad"}],"termid":"GO:0120086"}


id: PBO:0059813
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MT-CYB pseudogene 39","termid":"PBO:0059813"}


id: GO:0004726
data:
  {"annotated_genes":["SJAG_01667"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[83179],"is_not":false,"summary":null,"term":"GO:0004726"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: non-membrane spanning protein tyrosine phosphate + H2O = non-membrane spanning protein tyrosine + phosphate.","definition_xrefs":["EC:3.1.3.48"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein tyrosine phosphatase activity","termid":"GO:0004725"}],"gene_count":1,"genes_by_uniquename":{"SJAG_01667":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0140096"},{"rel_name":"is_a","termid":"GO:0016788"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0004721"}],"interesting_parent_ids":["GO:0004721","GO:0016788","GO:0140096","GO:0003824","GO:0016787","GO:0003674"],"is_obsolete":false,"name":"non-membrane spanning protein tyrosine phosphatase activity","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["Reactome:R-HSA-177935","Reactome:R-HSA-9635739","Reactome:R-HSA-177923","Reactome:R-HSA-177926","Reactome:R-HSA-177924"],"termid":"GO:0004726","terms_by_termid":{"GO:0004726":null}}


id: PBO:0081944
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ZNRD2 divergent transcript","termid":"PBO:0081944"}


id: GO:0043778
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: cobalt-precorrin 8 = cobyrinate.","definition_xrefs":["MetaCyc:RXN-8768"],"direct_ancestors":[{"relation_name":"is_a","term_name":"intramolecular acyltransferase activity","termid":"GO:0016867"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016853"}],"interesting_parent_ids":["GO:0003824","GO:0016853","GO:0003674"],"is_obsolete":false,"name":"cobalt-precorrin-8 methylmutase activity","secondary_identifiers":["EC:5.4.99.60","RHEA:16209"],"synonyms":[{"name":"cobalt-precorrin 8 methylmutase activity","type":"exact"},{"name":"cobalt-precorrin 8X methylmutase activity","type":"exact"},{"name":"cobalt-precorrin-8X methylmutase activity","type":"exact"}],"termid":"GO:0043778"}


id: MOD:00627
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"modification from Unimod Chemical derivative","definition_xrefs":["Unimod:316"],"direct_ancestors":[{"relation_name":"is_a","term_name":"reagent derivatized residue","termid":"MOD:00848"},{"relation_name":"is_a","term_name":"modified L-lysine residue","termid":"MOD:00912"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"2,5-dimethylpyrrole lysine from 2,5-hexanedione adduct","synonyms":[{"name":"(2S)-2-amino-6-(2,5-dimethylpyrrolidin-1-yl)hexanoic acid","type":"exact"},{"name":"2,5-dimethypyrrole","type":"related"},{"name":"6-(2,5-dimethylpyrrolidin-1-yl)norleucine","type":"exact"},{"name":"DimethylpyrroleAdduct","type":"related"}],"termid":"MOD:00627"}


id: PBO:0028737
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-hercynylselenocysteine_absent_from_cell","termid":"PBO:0028737"}


id: GO:0031203
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which the signal sequence of a translated protein binds to and forms a complex with the Sec complex.","definition_xrefs":["PMID:12518217","PMID:8707814"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein-containing complex assembly","termid":"GO:0065003"},{"relation_name":"part_of","term_name":"post-translational protein targeting to endoplasmic reticulum membrane","termid":"GO:0006620"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0065003"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0044085"},{"rel_name":"part_of","termid":"GO:0006605"}],"interesting_parent_ids":["GO:0006605","GO:0008150","GO:0065003","GO:0044085"],"is_obsolete":false,"name":"post-translational protein targeting to membrane, docking","synonyms":[{"name":"Sec-translated protein complex assembly","type":"exact"},{"name":"posttranslational protein membrane targeting, docking","type":"exact"},{"name":"posttranslational protein targeting to membrane, docking","type":"exact"},{"name":"protein docking during posttranslational protein targeting to membrane","type":"exact"}],"termid":"GO:0031203"}


id: PBO:0027666
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_chromatin_silencing_at_centromere_inner_repeat","termid":"PBO:0027666"}


id: GO:0051954
data:
  {"annotated_genes":["SJAG_03591","SJAG_00991","SJAG_05346","SJAG_02605"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[88945,106486,87274,94620],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1905589"},{"annotations":[88946],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1905626"},{"annotations":[94621,87275,88947],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1905534"}]},"cv_name":"biological_process","definition":"Any process that activates, maintains or increases the frequency, rate or extent of the directed movement of amines into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of transport","termid":"GO:0051050"},{"relation_name":"is_a","term_name":"regulation of amine transport","termid":"GO:0051952"},{"relation_name":"positively_regulates","term_name":"amine transport","termid":"GO:0015837"}],"gene_count":4,"genes_by_uniquename":{"SJAG_00991":null,"SJAG_02605":null,"SJAG_03591":null,"SJAG_05346":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"positively_regulates","termid":"GO:0006810"},{"rel_name":"regulates","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0006810","GO:0008150"],"is_obsolete":false,"name":"positive regulation of amine transport","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"activation of amine transport","type":"narrow"},{"name":"stimulation of amine transport","type":"narrow"},{"name":"up regulation of amine transport","type":"exact"},{"name":"up-regulation of amine transport","type":"exact"},{"name":"upregulation of amine transport","type":"exact"}],"termid":"GO:0051954","terms_by_termid":{"GO:1905534":null,"GO:1905589":null,"GO:1905626":null}}


id: PBO:0076690
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transcription elongation factor A like 7","termid":"PBO:0076690"}


id: GO:2000787
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of venous endothelial cell fate commitment.","definition_xrefs":["PMID:11585794"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of cell fate commitment","termid":"GO:0010453"},{"relation_name":"is_a","term_name":"regulation of blood vessel endothelial cell differentiation","termid":"GO:0110057"},{"relation_name":"regulates","term_name":"venous endothelial cell fate commitment","termid":"GO:0060845"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of venous endothelial cell fate commitment","termid":"GO:2000787"}


id: PBO:0045231
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DnaJ heat shock protein family (Hsp40) member C18","termid":"PBO:0045231"}


id: PBO:0041018
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"BPI fold containing family B member 1","termid":"PBO:0041018"}


id: PBO:0043327
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CDC like kinase 3 pseudogene 1","termid":"PBO:0043327"}


id: PBO:0026730
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_protein_localization_to_kinetochore_during_mitotic_prometaphase","termid":"PBO:0026730"}


id: GO:0051158
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of L-arabitol, the pentitol derived from arabinose or lyxose by reduction of the aldehyde group.","definition_xrefs":["ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"arabitol catabolic process","termid":"GO:0051157"},{"relation_name":"is_a","term_name":"L-arabitol metabolic process","termid":"GO:0051162"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005975"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0044281","GO:0005975","GO:0008150"],"is_obsolete":false,"name":"L-arabitol catabolic process","synonyms":[{"name":"L-arabitol breakdown","type":"exact"},{"name":"L-arabitol catabolism","type":"exact"},{"name":"L-arabitol degradation","type":"exact"}],"termid":"GO:0051158"}


id: PBO:0055083
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2501","termid":"PBO:0055083"}


id: PBO:0050351
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"heterogeneous nuclear ribonucleoprotein A1 pseudogene 54","termid":"PBO:0050351"}


id: PBO:0085152
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Nucleosomal histone H3-Lys79 methylase; methylation is required for telomeric silencing, meiotic checkpoint control, and DNA damage response; single DOT1 gene produces two Dot1p isoforms from alternative translation start sites as a result of leaky scanning by the ribosome","termid":"PBO:0085152"}


id: GO:0120126
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a starvation stimulus, deprivation of copper ion.","definition_xrefs":["PMID:24024382","GOC:sl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to starvation","termid":"GO:0042594"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"response to copper ion starvation","termid":"GO:0120126"}


id: PBO:0088413
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"extracellular leucine-rich repeat domain, receptor L domain-like Ecm33","termid":"PBO:0088413"}


id: GO:1905642
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that stops, prevents or reduces the frequency, rate or extent of DNA methylation.","definition_xrefs":["PMID:27336847","GO_REF:0000058","GOC:PARL","GOC:bc","GOC:TermGenie"],"gene_count":0,"genotype_count":0,"name":"obsolete negative regulation of DNA methylation (obsolete GO:1905642)","synonyms":[{"name":"down regulation of DNA methylation","type":"exact"},{"name":"down-regulation of DNA methylation","type":"exact"},{"name":"downregulation of DNA methylation","type":"exact"},{"name":"inhibition of DNA methylation","type":"narrow"}],"termid":"GO:1905642"}


id: PBO:0074589
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nucleolar RNA, H/ACA box 5A","termid":"PBO:0074589"}


id: PBO:0052590
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"karyopherin subunit alpha 1","termid":"PBO:0052590"}


id: GO:0003351
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The directed, self-propelled movement of cilia of epithelial cells. Depending on the type of cell, there may be one or many cilia per cell. This movement is usually coordinated between many epithelial cells, and serves to move extracellular fluid.","definition_xrefs":["GOC:dph","GOC:krc"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cilium movement","termid":"GO:0003341"},{"relation_name":"is_a","term_name":"extracellular transport","termid":"GO:0006858"},{"relation_name":"is_a","term_name":"microtubule-based transport","termid":"GO:0099111"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0051179","GO:0006810","GO:0008150"],"is_obsolete":false,"name":"epithelial cilium movement involved in extracellular fluid movement","synonyms":[{"name":"cilium movement involved in fluid flow","type":"related"},{"name":"epithelial cilium beating","type":"related"}],"termid":"GO:0003351"}


id: GO:0009373
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process involving pheromones that modulates the frequency, rate or extent of transcription.","definition_xrefs":["GOC:go_curators"],"gene_count":0,"genotype_count":0,"name":"obsolete regulation of transcription by pheromones (obsolete GO:0009373)","termid":"GO:0009373"}


id: PR:O94292
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A 50S ribosomal protein L14 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO03758","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"54S ribosomal protein L38, mitochondrial (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC887.07","secondary_identifiers":["UniProtKB:O94292"],"synonyms":[{"name":"Spom972h-rplN","type":"exact"}],"termid":"PR:O94292"}


id: GO:2001130
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of a methane from a trimethylamine.","definition_xrefs":["GOC:mengo_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"amine metabolic process","termid":"GO:0009308"},{"relation_name":"is_a","term_name":"methanogenesis","termid":"GO:0015948"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006091"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0006091"],"is_obsolete":false,"name":"methane biosynthetic process from trimethylamine","termid":"GO:2001130"}


id: PBO:0058810
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 7852","termid":"PBO:0058810"}


id: SO:1000071
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A sequence_variant_effect where the way in which the primary transcriptional product is processed to form the mature transcript, specifically by the removal (splicing) of intron sequences is changed.","definition_xrefs":["EBI:www.ebi.ac.uk/mutations/recommendations/mutevent.html"],"gene_count":0,"genotype_count":0,"name":"OBSOLETE SO:1000071 sequence_variant_affecting_splicing (obsolete SO:1000071)","synonyms":[{"name":"mutation affecting splicing","type":"related"},{"name":"sequence variant affecting splicing","type":"exact"}],"termid":"SO:1000071"}


id: PBO:0051982
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"jagged canonical Notch ligand 1","termid":"PBO:0051982"}


id: FYPO:0007325
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which an interaction between a protein and a transfer RNA (tRNA) is increased. One of the relevant gene products may be encoded by the mutated gene, or both the RNA and protein may be encoded by genes other than the mutated one.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased protein-RNA interaction","termid":"FYPO:0002135"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0002131"},{"rel_name":"is_a","termid":"FYPO:0000707"},{"rel_name":"is_a","termid":"FYPO:0000652"}],"interesting_parent_ids":["FYPO:0000652","FYPO:0000707","FYPO:0002131","FYPO:0001985"],"is_obsolete":false,"name":"increased tRNA binding","synonyms":[{"name":"increased protein-tRNA interaction","type":"exact"},{"name":"increased protein-transfer RNA interaction","type":"exact"},{"name":"increased transfer RNA binding","type":"exact"}],"termid":"FYPO:0007325"}


id: PBO:0028120
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abolished_protein_localization_to_lateral_cortical_node,_with_protein_mislocalized_to_cytoplasm","termid":"PBO:0028120"}


id: GO:0010559
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the rate, frequency, or extent of the chemical reactions and pathways resulting in the formation of a glycoprotein, a protein that contains covalently bound glycose (i.e. monosaccharide) residues; the glycose occurs most commonly as oligosaccharide or fairly small polysaccharide but occasionally as monosaccharide.","definition_xrefs":["GOC:dph","GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of macromolecule biosynthetic process","termid":"GO:0010556"},{"relation_name":"is_a","term_name":"regulation of glycoprotein metabolic process","termid":"GO:1903018"},{"relation_name":"regulates","term_name":"glycoprotein biosynthetic process","termid":"GO:0009101"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of glycoprotein biosynthetic process","termid":"GO:0010559"}


id: PBO:0040124
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ankyrin repeat and SOCS box containing 10","termid":"PBO:0040124"}


id: PBO:0043489
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ciliary neurotrophic factor receptor","termid":"PBO:0043489"}


id: GO:0097506
data:
  {"annotated_genes":["SJAG_02528"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[109960],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004844"}]},"cv_name":"molecular_function","definition":"DNA N-glycosylase activity acting on deaminated bases.","definition_xrefs":["GOC:al","PMID:18789404"],"direct_ancestors":[{"relation_name":"is_a","term_name":"DNA N-glycosylase activity","termid":"GO:0019104"}],"gene_count":1,"genes_by_uniquename":{"SJAG_02528":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016798"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0140097"},{"rel_name":"is_a","termid":"GO:0016787"}],"interesting_parent_ids":["GO:0016798","GO:0140097","GO:0003824","GO:0003674","GO:0016787"],"is_obsolete":false,"name":"deaminated base DNA N-glycosylase activity","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"DNA glycosylase activity acting on deaminated bases","type":"exact"},{"name":"deaminated base DNA glycosylase activity","type":"exact"}],"termid":"GO:0097506","terms_by_termid":{"GO:0004844":null}}


id: PBO:0109360
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SEL1L2 adaptor subunit of SYVN1 ubiquitin ligase","termid":"PBO:0109360"}


id: PBO:0001896
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"structure-specific endonuclease subunit","termid":"PBO:0001896"}


id: GO:0072252
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of a metanephric juxtaglomerulus cell over time, from its formation to the mature structure.","definition_xrefs":["GOC:mtg_kidney_jan10"],"direct_ancestors":[{"relation_name":"is_a","term_name":"juxtaglomerulus cell development","termid":"GO:0072142"},{"relation_name":"part_of","term_name":"metanephric juxtaglomerulus cell differentiation","termid":"GO:0072251"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"metanephric juxtaglomerulus cell development","termid":"GO:0072252"}


id: GO:0035803
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Construction of an egg coat, a specialized extracellular matrix that surrounds the ovum of animals. The egg coat provides structural support and can play an essential role in oogenesis, fertilization and early development.","definition_xrefs":["PMID:16944418","GOC:sart","GOC:yaf","PMID:17163408","GOC:bf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular process involved in reproduction in multicellular organism","termid":"GO:0022412"},{"relation_name":"part_of","term_name":"oogenesis","termid":"GO:0048477"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"egg coat formation","synonyms":[{"name":"VE formation","type":"narrow"},{"name":"ZP assembly","type":"narrow"},{"name":"vitelline envelope formation","type":"narrow"},{"name":"zona pellucida assembly","type":"narrow"}],"termid":"GO:0035803"}


id: PBO:0067794
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 5S ribosomal pseudogene 96","termid":"PBO:0067794"}


id: PBO:0047583
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"fibroblast growth factor receptor 3 pseudogene 3","termid":"PBO:0047583"}


id: GO:0004521
data:
  {"annotated_genes":["SJAG_02547","SJAG_02039","SJAG_01433","SJAG_01884","SJAG_04527","SJAG_03539","SJAG_01476","SJAG_01648","SJAG_00997","SJAG_03796","SJAG_06022","SJAG_00306","SJAG_04907","SJAG_01623","SJAG_01551","SJAG_04019","SJAG_03425","SJAG_04198","SJAG_04582","SJAG_01173","SJAG_01260","SJAG_02156","SJAG_04519","SJAG_04091","SJAG_03689","SJAG_06613","SJAG_04435","SJAG_02553","SJAG_00772","SJAG_04587","SJAG_01948","SJAG_03952","SJAG_04916","SJAG_04006","SJAG_01463","SJAG_02790","SJAG_00754","SJAG_02621","SJAG_00955","SJAG_04885","SJAG_03234","SJAG_00400","SJAG_03328","SJAG_02374","SJAG_03962"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[61239,83829,84530,85022,85909,86151,91512,103361,104930,108923,112418,114163],"is_not":false,"summary":null,"term":"GO:0004521"},{"annotations":[105842,87700],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0042781"},{"annotations":[87234],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1990174"},{"annotations":[112075,97976,99267,105782],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004525"},{"annotations":[109525,114686,95232,100399,101524,92190,92490,101525,111374,90359,100622,111457],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0000171"},{"annotations":[95233,100400,111375,92491,97850,100623,114687,109526,90360],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004526"},{"annotations":[114183,87761],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0016891"},{"annotations":[85753],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0008419"},{"annotations":[83882,83781,98759,92831,93845,105054],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004523"},{"annotations":[113770,97125,101801,96574],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0000213"}]},"cv_name":"molecular_function","definition":"Catalysis of the hydrolysis of ester linkages within ribonucleic acid by creating internal breaks.","definition_xrefs":["ISBN:0198547684","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"endonuclease activity","termid":"GO:0004519"},{"relation_name":"is_a","term_name":"RNA nuclease activity","termid":"GO:0004540"}],"gene_count":45,"genes_by_uniquename":{"SJAG_00306":null,"SJAG_00400":null,"SJAG_00754":null,"SJAG_00772":null,"SJAG_00955":null,"SJAG_00997":null,"SJAG_01173":null,"SJAG_01260":null,"SJAG_01433":null,"SJAG_01463":null,"SJAG_01476":null,"SJAG_01551":null,"SJAG_01623":null,"SJAG_01648":null,"SJAG_01884":null,"SJAG_01948":null,"SJAG_02039":null,"SJAG_02156":null,"SJAG_02374":null,"SJAG_02547":null,"SJAG_02553":null,"SJAG_02621":null,"SJAG_02790":null,"SJAG_03234":null,"SJAG_03328":null,"SJAG_03425":null,"SJAG_03539":null,"SJAG_03689":null,"SJAG_03796":null,"SJAG_03952":null,"SJAG_03962":null,"SJAG_04006":null,"SJAG_04019":null,"SJAG_04091":null,"SJAG_04198":null,"SJAG_04435":null,"SJAG_04519":null,"SJAG_04527":null,"SJAG_04582":null,"SJAG_04587":null,"SJAG_04885":null,"SJAG_04907":null,"SJAG_04916":null,"SJAG_06022":null,"SJAG_06613":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016788"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0140098"}],"interesting_parent_ids":["GO:0003824","GO:0140098","GO:0016788","GO:0016787","GO:0003674"],"is_obsolete":false,"name":"RNA endonuclease activity","references_by_uniquename":{"GO_REF:0000107":null,"GO_REF:0000117":null},"secondary_identifiers":["Reactome:R-HSA-6791223","Reactome:R-HSA-425923","Reactome:R-HSA-5601887","Reactome:R-HSA-426520","Reactome:R-HSA-6814555","Reactome:R-HSA-9023912","Reactome:R-HSA-927836","Reactome:R-HSA-9708812","Reactome:R-HSA-9009936","Reactome:R-HSA-9708327","Reactome:R-HSA-5601910","Reactome:R-HSA-9023909","Reactome:R-HSA-9009941"],"synonyms":[{"name":"endonuclease G activity","type":"related"},{"name":"endoribonuclease activity","type":"exact"}],"termid":"GO:0004521","terms_by_termid":{"GO:0000171":null,"GO:0000213":null,"GO:0004521":null,"GO:0004523":null,"GO:0004525":null,"GO:0004526":null,"GO:0008419":null,"GO:0016891":null,"GO:0042781":null,"GO:1990174":null}}


id: GO:0047966
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: D-glucose 6-sulfate + H2O = D-glucose + H+ + sulfate.","definition_xrefs":["EC:3.1.6.3","RHEA:19145"],"direct_ancestors":[{"relation_name":"is_a","term_name":"sulfuric ester hydrolase activity","termid":"GO:0008484"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016788"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016788","GO:0003674","GO:0003824","GO:0016787"],"is_obsolete":false,"name":"glycosulfatase activity","secondary_identifiers":["MetaCyc:GLYCOSULFATASE-RXN","KEGG_REACTION:R00534"],"synonyms":[{"name":"glucosulfatase activity","type":"related"},{"name":"glycosulphatase activity","type":"exact"},{"name":"sugar-sulfate sulfohydrolase activity","type":"related"}],"termid":"GO:0047966"}


id: PBO:0045927
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"EF-hand domain family member B","termid":"PBO:0045927"}


id: PBO:0067894
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 5S ribosomal pseudogene 196","termid":"PBO:0067894"}


id: CHEBI:15379
data:
  {"annotation_feature_type":"gene","cv_name":"chebi_ontology","direct_ancestors":[{"relation_name":"is_a","term_name":"chemical entity","termid":"CHEBI:24431"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dioxygen","termid":"CHEBI:15379"}


id: PBO:0051392
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"immunoglobulin lambda constant/OR22-2 (pseudogene)","termid":"PBO:0051392"}


id: GO:1904850
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of establishment of protein localization to telomere.","definition_xrefs":["GO_REF:0000058","GOC:BHF","PMID:25467444","GOC:nc","GOC:BHF_telomere","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of establishment of protein localization to telomere","termid":"GO:0070203"},{"relation_name":"is_a","term_name":"negative regulation of protein localization to chromosome, telomeric region","termid":"GO:1904815"},{"relation_name":"is_a","term_name":"negative regulation of establishment of protein localization","termid":"GO:1904950"},{"relation_name":"negatively_regulates","term_name":"establishment of protein localization to telomere","termid":"GO:0070200"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of establishment of protein localization to telomere","synonyms":[{"name":"down regulation of establishment of protein localisation to telomere","type":"exact"},{"name":"down regulation of establishment of protein localization to chromosome, telomeric region","type":"exact"},{"name":"down regulation of establishment of protein localization to telomere","type":"exact"},{"name":"down-regulation of establishment of protein localisation to telomere","type":"exact"},{"name":"down-regulation of establishment of protein localization to chromosome, telomeric region","type":"exact"},{"name":"down-regulation of establishment of protein localization to telomere","type":"exact"},{"name":"downregulation of establishment of protein localisation to telomere","type":"exact"},{"name":"downregulation of establishment of protein localization to chromosome, telomeric region","type":"exact"},{"name":"downregulation of establishment of protein localization to telomere","type":"exact"},{"name":"inhibition of establishment of protein localisation to telomere","type":"narrow"},{"name":"inhibition of establishment of protein localization to chromosome, telomeric region","type":"narrow"},{"name":"inhibition of establishment of protein localization to telomere","type":"narrow"},{"name":"negative regulation of establishment of protein localisation to telomere","type":"exact"},{"name":"negative regulation of establishment of protein localization to chromosome, telomeric region","type":"exact"}],"termid":"GO:1904850"}


id: PBO:0084593
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Merged open reading frame; does not encode a discrete protein;YGR272C was originally annotated as an independent ORF, but as a result of a sequence change, it was merged with an adjacent ORF into a single reading frame, designated YGR271C-A","termid":"PBO:0084593"}


id: PBO:0001374
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"serine/threonine protein kinase Cka1","termid":"PBO:0001374"}


id: GO:0003187
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which the structure of the ventriculo bulbo valve is generated and organized.","definition_xrefs":["GOC:mtg_heart"],"direct_ancestors":[{"relation_name":"is_a","term_name":"heart valve morphogenesis","termid":"GO:0003179"},{"relation_name":"part_of","term_name":"ventriculo bulbo valve development","termid":"GO:0003173"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"ventriculo bulbo valve morphogenesis","termid":"GO:0003187"}


id: SO:1000075
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"Sequence variant affects the editing of the transcript.","definition_xrefs":["EBI:www.ebi.ac.uk/mutations/recommendations/mutevent.html"],"gene_count":0,"genotype_count":0,"name":"OBSOLETE SO:1000075 sequence_variant_affecting_editing (obsolete SO:1000075)","synonyms":[{"name":"mutation affecting editing","type":"related"},{"name":"sequence variant affecting editing","type":"exact"}],"termid":"SO:1000075"}


id: PBO:0045794
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"endothelial differentiation related factor 1","termid":"PBO:0045794"}


id: FYPO:0000730
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A spindle phenotype in which the spindle is longer than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal spindle morphology","termid":"FYPO:0003607"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0002399"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"output_of","termid":"FYPO:0000054"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000120"}],"interesting_parent_ids":["FYPO:0002399","FYPO:0001985","FYPO:0000054","FYPO:0000120","FYPO:0000002","FYPO:0005447"],"is_obsolete":false,"name":"long spindle","synonyms":[{"name":"elongated spindle","type":"exact"},{"name":"increased spindle length","type":"exact"},{"name":"long spindles","type":"exact"}],"termid":"FYPO:0000730"}


id: MOD:00135
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively crosslinks an L-asparagine residue and a glycine residue by an isopeptide bond with formation of N-(L-isoaspartyl)glycine and the release of ammonia.","definition_xrefs":["PubMed:1826288","RESID:AA0126","ChEBI:21479"],"direct_ancestors":[{"relation_name":"is_a","term_name":"crosslinked residues with loss of ammonia","termid":"MOD:00946"},{"relation_name":"is_a","term_name":"N-(L-isoaspartyl)-glycine","termid":"MOD:01928"},{"relation_name":"is_a","term_name":"crosslinked L-asparagine residue","termid":"MOD:02042"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"N-(L-isoaspartyl)-glycine (Asn)","synonyms":[{"name":"(2S)-2-amino-4-(carboxymethyl)amino-4-oxobutanoic acid","type":"exact"},{"name":"2-amino-N4-(carboxymethyl)-butanediamic acid","type":"exact"},{"name":"CROSSLNK Isoaspartyl glycine isopeptide (Asn-Gly)","type":"exact"},{"name":"CROSSLNK Isoaspartyl glycine isopeptide (Gly-Asn)","type":"exact"},{"name":"N-(L-isoaspartyl)-glycine","type":"exact"},{"name":"N-beta-aspartylglycine","type":"exact"},{"name":"N4-(carboxymethyl)-asparagine","type":"exact"},{"name":"XLNK-4Asp-NGly(Asn)","type":"exact"},{"name":"isoaspartyl glycine","type":"exact"}],"termid":"MOD:00135"}


id: PBO:0016532
data:
  {"annotation_feature_type":"gene","cv_name":"complementation","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"functionally complements S. cerevisiae YHR072W","termid":"PBO:0016532"}


id: PBO:0083988
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Glutaredoxin that employs a dithiol mechanism of catalysis; monomeric; activity is low and null mutation does not affect sensitivity to oxidative stress; GFP-fusion protein localizes to the cytoplasm; expression strongly induced by arsenic","termid":"PBO:0083988"}


id: GO:0019329
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways by which ammonia or ammonium is converted to molecular nitrogen or another nitrogen compound, with accompanying loss of electrons.","definition_xrefs":["MetaCyc:P303-PWY","GOC:mah","MetaCyc:PWY-2242","MetaCyc:AMMOXID-PWY"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nitrogen compound metabolic process","termid":"GO:0006807"},{"relation_name":"is_a","term_name":"small molecule metabolic process","termid":"GO:0044281"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0044281","GO:0008150"],"is_obsolete":false,"name":"ammonia oxidation","termid":"GO:0019329"}


id: GO:0019298
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of coenzyme B (7-mercaptoheptanoylthreonine phosphate), a coenzyme involved in the utilization of methane by methanogenic prokaryotes.","definition_xrefs":["PMID:10940051"],"direct_ancestors":[{"relation_name":"is_a","term_name":"coenzyme B metabolic process","termid":"GO:0019297"},{"relation_name":"is_a","term_name":"cellular modified amino acid biosynthetic process","termid":"GO:0042398"},{"relation_name":"is_a","term_name":"monocarboxylic acid biosynthetic process","termid":"GO:0072330"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0044281","GO:0008150"],"is_obsolete":false,"name":"coenzyme B biosynthetic process","secondary_identifiers":["MetaCyc:P241-PWY"],"synonyms":[{"name":"coenzyme B anabolism","type":"exact"},{"name":"coenzyme B biosynthesis","type":"exact"},{"name":"coenzyme B formation","type":"exact"},{"name":"coenzyme B synthesis","type":"exact"}],"termid":"GO:0019298"}


id: GO:0015137
data:
  {"annotated_genes":["SJAG_01872"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[87315],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0071913"}]},"cv_name":"molecular_function","definition":"Enables the transfer of citrate, 2-hydroxy-1,2,3-propanetricarboyxlate, from one side of a membrane to the other.","definition_xrefs":["RHEA:33183","GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"tricarboxylic acid transmembrane transporter activity","termid":"GO:0015142"}],"gene_count":1,"genes_by_uniquename":{"SJAG_01872":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0005215","GO:0003674","GO:0022857"],"is_obsolete":false,"name":"citrate transmembrane transporter activity","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["Reactome:R-HSA-433104","TC:2.A.29.7.2"],"synonyms":[{"name":"tricarboxylate transport protein","type":"related"}],"termid":"GO:0015137","terms_by_termid":{"GO:0071913":null}}


id: GO:0046287
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving isoflavonoids, a group of water-soluble phenolic derivatives, isomeric with flavonoids, containing a flavan skeleton. They are differentiated from flavonoids by the point of attachment of the aromatic ring group.","definition_xrefs":["PMID:15734910","GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phenylpropanoid metabolic process","termid":"GO:0009698"},{"relation_name":"is_a","term_name":"heterocycle metabolic process","termid":"GO:0046483"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0019748"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0019748","GO:0008150"],"is_obsolete":false,"name":"isoflavonoid metabolic process","synonyms":[{"name":"isoflavonoid metabolism","type":"exact"}],"termid":"GO:0046287"}


id: GO:0042105
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A T cell receptor complex in which the TCR heterodimer comprises alpha and beta chains, associated with the CD3 complex; recognizes a complex consisting of an antigen-derived peptide bound to a class I or class II MHC protein.","definition_xrefs":["ISBN:0781735149","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"T cell receptor complex","termid":"GO:0042101"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0005886"}],"interesting_parent_ids":["GO:0005575","GO:0032991","GO:0005886"],"is_obsolete":false,"name":"alpha-beta T cell receptor complex","synonyms":[{"name":"alpha-beta T lymphocyte receptor complex","type":"exact"},{"name":"alpha-beta T-cell receptor complex","type":"exact"},{"name":"alpha-beta T-lymphocyte receptor complex","type":"exact"},{"name":"alpha-beta TCR complex","type":"exact"}],"termid":"GO:0042105"}


id: MOD:01435
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively results from forming an adduct between a cysteine residue, a glutamic acid residue and the indole compound 2-carboxy-3-methyl-4-hydroxymethyl--indole.","definition_xrefs":["PubMed:893891","RESID:AA0488"],"direct_ancestors":[{"relation_name":"is_a","term_name":"S-acylated residue","termid":"MOD:00672"},{"relation_name":"is_a","term_name":"crosslinked L-cysteine residue","termid":"MOD:02044"},{"relation_name":"is_a","term_name":"crosslinked L-glutamic acid residue","termid":"MOD:02045"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:00649"}],"interesting_parent_ids":["MOD:00649"],"is_obsolete":false,"name":"2-(cystein-S-ylcarbonyl)-3-methyl-4-(glutam-5-yloxy)methylindole","synonyms":[{"name":"2-([(1R)-1-amino-1-carboxyeth-2-yl]sulfanyl)carbonyl-3-methyl-4-([(1S)-1-amino-1-carboxy-4-oxobutan-4-yl]oxy)methyl-1H-indole","type":"exact"},{"name":"2-(cystein-S-ylcarbonyl)-3-methyl-4-(glutam-5-yloxy)methylindole","type":"exact"},{"name":"2-(cystein-S-ylcarbonyl)-4-[(glutam-5-yloxy)methyl]-3-methyl-1H-indole","type":"exact"},{"name":"BINDING 3-methyl-4-hydroxymethylindole-2-carboxylic acid (covalent; via 2 links)","type":"exact"}],"termid":"MOD:01435"}


id: PBO:0059794
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MT-CYB pseudogene 20","termid":"PBO:0059794"}


id: PBO:0068934
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 177, pseudogene","termid":"PBO:0068934"}


id: PBO:0053444
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 391","termid":"PBO:0053444"}


id: PBO:0005867
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"P-specific polypeptide Pc","termid":"PBO:0005867"}


id: GO:0006684
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving sphingomyelin, N-acyl-4-sphingenyl-1-O-phosphorylcholine, any of a class of phospholipids in which the amino group of sphingosine is in amide linkage with one of several fatty acids, while the terminal hydroxyl group of sphingosine is esterified to phosphorylcholine.","definition_xrefs":["ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phospholipid metabolic process","termid":"GO:0006644"},{"relation_name":"is_a","term_name":"sphingolipid metabolic process","termid":"GO:0006665"},{"relation_name":"is_a","term_name":"amide metabolic process","termid":"GO:0043603"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006629"}],"interesting_parent_ids":["GO:0008150","GO:0006629"],"is_obsolete":false,"name":"sphingomyelin metabolic process","synonyms":[{"name":"sphingomyelin metabolism","type":"exact"}],"termid":"GO:0006684"}


id: PBO:0029382
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-sensitive_to_nicotinamide","termid":"PBO:0029382"}


id: FYPO:0006586
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype in which the localization of a protein to the plasma membrane at the tip of a shmoo, or mating projection, is abolished, and the protein is instead detected distributed over a greater area of the plasma membrane than normal.","definition_xrefs":["PMID:29134248","PomBase:mah"],"direct_ancestors":[{"relation_name":"has_part","term_name":"protein abnormally dispersed at shmoo tip","termid":"FYPO:0006386"},{"relation_name":"is_a","term_name":"abnormal protein localization to shmoo tip membrane","termid":"FYPO:0006584"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"has_part","termid":"FYPO:0000138"},{"rel_name":"has_part","termid":"FYPO:0005447"},{"rel_name":"has_part","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000138","FYPO:0005447","FYPO:0000002"],"is_obsolete":false,"name":"abolished protein localization to shmoo tip membrane, with protein distributed in plasma membrane","synonyms":[{"name":"abolished protein localisation to mating projection tip membrane, with protein distributed in plasma membrane","type":"exact"},{"name":"abolished protein localization to mating projection tip membrane, with protein distributed in plasma membrane","type":"exact"},{"name":"abolished protein localization to plasma membrane at shmoo tip, with protein distributed in plasma membrane","type":"exact"},{"name":"abolished protein localization to shmoo membrane fusion domain, with protein distributed in plasma membrane","type":"exact"},{"name":"abolished protein localization to shmoo projection membrane, with protein distributed in plasma membrane","type":"related"},{"name":"protein localization to shmoo tip membrane abolished, with protein distributed in plasma membrane","type":"related"}],"termid":"FYPO:0006586"}


id: PBO:0073921
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"solute carrier family 16 member 10","termid":"PBO:0073921"}


id: PBO:0073211
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"semaphorin 4C","termid":"PBO:0073211"}


id: PBO:0067135
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 183, pseudogene","termid":"PBO:0067135"}


id: PBO:0086014
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein of unknown function; SWAT-GFP fusion protein localizes to endoplasmic reticulum (ER) while mCherry fusion localizes to both ER and vacuole","termid":"PBO:0086014"}


id: PBO:0040439
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ATPase phospholipid transporting 8B1","termid":"PBO:0040439"}


id: PBO:0002435
data:
  {"annotation_feature_type":"gene","cv_name":"subunit_composition","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"heterodimer","termid":"PBO:0002435"}


id: PBO:0084719
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Mitochondrial inner membrane protein; associates with respiratory chain supercomplexes III (ubiquinol-cytochrome c reductase) and IV (cytochrome c oxidase); identified by sequence comparison with hemiascomycetous yeast species","termid":"PBO:0084719"}


id: PBO:0091530
data:
  {"annotation_feature_type":"gene","cv_name":"name_description","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"M Twenty-Six binding protein","termid":"PBO:0091530"}


id: GO:0019552
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The anaerobic chemical reactions and pathways resulting in the breakdown of glutamate, via the intermediate 2-hydroxyglutarate, yielding energy in the form of ATP.","definition_xrefs":["MetaCyc:P162-PWY"],"direct_ancestors":[{"relation_name":"is_a","term_name":"anaerobic glutamate catabolic process","termid":"GO:0019670"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006091"},{"rel_name":"is_a","termid":"GO:0044248"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006520"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0044248","GO:0006091","GO:0006520","GO:0044281","GO:0008150"],"is_obsolete":false,"name":"glutamate catabolic process via 2-hydroxyglutarate","synonyms":[{"name":"glutamate fermentation via 2-hydroxyglutarate","type":"exact"}],"termid":"GO:0019552"}


id: PBO:0001261
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"serine/threonine protein kinase Ppk13 (predicted)","termid":"PBO:0001261"}


id: PBO:0073978
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"solute carrier family 23 member 3","termid":"PBO:0073978"}


id: GO:1905114
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any cell surface receptor signaling pathway that is involved in cell-cell signaling.","definition_xrefs":["ISBN:0-7167-3051-0","GO_REF:0000060","GOC:TermGenie"],"gene_count":0,"genotype_count":0,"name":"obsolete cell surface receptor signaling pathway involved in cell-cell signaling (obsolete GO:1905114)","synonyms":[{"name":"cell surface receptor linked signal transduction involved in cell-cell signaling","type":"exact"},{"name":"cell surface receptor linked signal transduction involved in cell-cell signalling","type":"exact"},{"name":"cell surface receptor linked signaling pathway involved in cell-cell signaling","type":"exact"},{"name":"cell surface receptor linked signaling pathway involved in cell-cell signalling","type":"exact"},{"name":"cell surface receptor linked signalling pathway involved in cell-cell signaling","type":"exact"},{"name":"cell surface receptor linked signalling pathway involved in cell-cell signalling","type":"exact"},{"name":"cell surface receptor signaling pathway involved in cell-cell signalling","type":"exact"}],"termid":"GO:1905114"}


id: PBO:0001733
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase family or domain","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal-ubiquitin fusion protein","termid":"PBO:0001733"}


id: PR:O94267
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A FACT complex subunit SPT16 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx","OMA:SCHPO03804"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"FACT complex subunit spt16 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBP8B7.19","secondary_identifiers":["UniProtKB:O94267"],"synonyms":[{"name":"Spom972h-SUPT16H","type":"exact"},{"name":"facilitates chromatin transcription complex subunit spt16 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:O94267"}


id: PBO:0062825
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"OSGEPL1 antisense RNA 1","termid":"PBO:0062825"}


id: GO:0007572
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. (Was not defined before being made obsolete).","definition_xrefs":["GOC:go_curators"],"gene_count":0,"genotype_count":0,"name":"obsolete age dependent decreased translational activity (obsolete GO:0007572)","synonyms":[{"name":"age dependent decreased translational activity","type":"exact"}],"termid":"GO:0007572"}


id: GO:1901575
data:
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id: GO:0071375
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  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a peptide hormone stimulus. A peptide hormone is any of a class of peptides that are secreted into the blood stream and have endocrine functions in living animals.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular response to hormone stimulus","termid":"GO:0032870"},{"relation_name":"is_a","term_name":"response to peptide hormone","termid":"GO:0043434"},{"relation_name":"is_a","term_name":"cellular response to peptide","termid":"GO:1901653"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cellular response to peptide hormone stimulus","synonyms":[{"name":"cellular response to polypeptide hormone stimulus","type":"exact"}],"termid":"GO:0071375"}


id: GO:0045603
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of endothelial cell differentiation.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of epithelial cell differentiation","termid":"GO:0030858"},{"relation_name":"is_a","term_name":"regulation of endothelial cell differentiation","termid":"GO:0045601"},{"relation_name":"positively_regulates","term_name":"endothelial cell differentiation","termid":"GO:0045446"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of endothelial cell differentiation","synonyms":[{"name":"activation of endothelial cell differentiation","type":"narrow"},{"name":"stimulation of endothelial cell differentiation","type":"narrow"},{"name":"up regulation of endothelial cell differentiation","type":"exact"},{"name":"up-regulation of endothelial cell differentiation","type":"exact"},{"name":"upregulation of endothelial cell differentiation","type":"exact"}],"termid":"GO:0045603"}


id: GO:0004509
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: A C(21) steroid + [reduced NADPH--hemoprotein reductase] + O2 = a 21-hydroxy-C(21)-steroid + [oxidized NADPH--hemoprotein reductase] + H2O.","definition_xrefs":["RHEA:65612"],"direct_ancestors":[{"relation_name":"is_a","term_name":"steroid hydroxylase activity","termid":"GO:0008395"},{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen","termid":"GO:0016705"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016491"],"is_obsolete":false,"name":"steroid 21-monooxygenase activity","secondary_identifiers":["MetaCyc:STEROID-21-MONOOXYGENASE-RXN","Reactome:R-HSA-193964","EC:1.14.14.16","Reactome:R-HSA-193981","Reactome:R-HSA-5601976"],"synonyms":[{"name":"21-hydroxylase activity","type":"related"},{"name":"cytochrome P450 CYP21A1","type":"narrow"},{"name":"cytochrome p450 XXIA1 activity","type":"narrow"},{"name":"steroid 21-hydroxylase activity","type":"exact"},{"name":"steroid,hydrogen-donor:oxygen oxidoreductase (21-hydroxylating)","type":"related"}],"termid":"GO:0004509"}


id: PBO:0039031
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ArfGAP with GTPase domain, ankyrin repeat and PH domain 7, pseudogene","termid":"PBO:0039031"}


id: PBO:0063186
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pyruvate carboxylase","termid":"PBO:0063186"}


id: PBO:0040601
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"BAG cochaperone 5","termid":"PBO:0040601"}


id: GO:0006311
data:
  {"annotated_genes":["SJAG_02460","SJAG_02267"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[84793,96306],"is_not":false,"summary":null,"term":"GO:0006311"}]},"cv_name":"biological_process","definition":"The cell cycle process in which genetic information is transferred from one helix to another. It often occurs in association with general genetic recombination events, and is believed to be a straightforward consequence of the mechanisms of general recombination and DNA repair. For example, meiosis might yield three copies of the maternal version of an allele and only one copy of the paternal allele, indicating that one of the two copies of the paternal allele has been changed to a copy of the maternal allele.","definition_xrefs":["ISBN:0815316194"],"direct_ancestors":[{"relation_name":"is_a","term_name":"gene conversion","termid":"GO:0035822"},{"relation_name":"is_a","term_name":"meiosis I cell cycle process","termid":"GO:0061982"}],"gene_count":2,"genes_by_uniquename":{"SJAG_02267":null,"SJAG_02460":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006259"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006310"},{"rel_name":"part_of","termid":"GO:0007049"}],"interesting_parent_ids":["GO:0006259","GO:0007049","GO:0008150","GO:0006310"],"is_obsolete":false,"name":"meiotic gene conversion","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"gene conversion without reciprocal crossover","type":"exact"}],"termid":"GO:0006311","terms_by_termid":{"GO:0006311":null}}


id: FYPO:0006837
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the dephosphorylation of one or more specific proteins, or of specific protein sites, occurs to a greater extent than normal during cytokinesis.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased protein modification during vegetative growth","termid":"FYPO:0000547"},{"relation_name":"is_a","term_name":"abnormal protein dephosphorylation during vegetative growth","termid":"FYPO:0005956"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0002494"},{"rel_name":"is_a","termid":"FYPO:0002274"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0002274","FYPO:0001985","FYPO:0001320","FYPO:0005447","FYPO:0000002","FYPO:0002494"],"is_obsolete":false,"name":"increased protein dephosphorylation during cytokinesis","synonyms":[{"name":"increased protein dephosphorylation during cytokinesis during vegetative growth","type":"exact"},{"name":"increased protein/peptide dephosphorylation during cytokinesis","type":"exact"}],"termid":"FYPO:0006837"}


id: GO:0035291
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The specification of the characteristic structures of the intercalary segment of the anterior head, following establishment of segment boundaries. Identity is considered to be the aggregate of characteristics by which a structure is recognized.","definition_xrefs":["ISBN:0878932437","PMID:10477305"],"direct_ancestors":[{"relation_name":"is_a","term_name":"specification of segmental identity, head","termid":"GO:0007380"},{"relation_name":"part_of","term_name":"anterior head segmentation","termid":"GO:0035288"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"specification of segmental identity, intercalary segment","termid":"GO:0035291"}


id: GO:0009909
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of flower development.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of post-embryonic development","termid":"GO:0048580"},{"relation_name":"is_a","term_name":"regulation of shoot system development","termid":"GO:0048831"},{"relation_name":"is_a","term_name":"regulation of reproductive process","termid":"GO:2000241"},{"relation_name":"regulates","term_name":"flower development","termid":"GO:0009908"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of flower development","termid":"GO:0009909"}


id: PBO:0003656
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cyclin-dependent protein kinase Cdk1/Cdc2","termid":"PBO:0003656"}


id: PBO:0030537
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_protein_processing","termid":"PBO:0030537"}


id: GO:0032428
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the hydrolysis of terminal non-reducing N-acetyl-D-galactosamine residues in N-acetyl-beta-D-galactosaminides.","definition_xrefs":["EC:3.2.1.53"],"direct_ancestors":[{"relation_name":"is_a","term_name":"beta-N-acetylhexosaminidase activity","termid":"GO:0004563"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016798"}],"interesting_parent_ids":["GO:0003674","GO:0016787","GO:0003824","GO:0016798"],"is_obsolete":false,"name":"beta-N-acetylgalactosaminidase activity","secondary_identifiers":["MetaCyc:3.2.1.53-RXN"],"termid":"GO:0032428"}


id: PBO:0065539
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"phosphatase and tensin homolog","termid":"PBO:0065539"}


id: PBO:0063043
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"palladin, cytoskeletal associated protein","termid":"PBO:0063043"}


id: MOD:01713
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively replaces a residue hydroxyl with one of the Applied Biosystems iTRAQ4plex reagent reporter+balance acyloxy groups.","definition_xrefs":["PubMed:18688235"],"direct_ancestors":[{"relation_name":"is_a","term_name":"isotope tagged reagent O-acylated residue","termid":"MOD:01707"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:00649"}],"interesting_parent_ids":["MOD:00649"],"is_obsolete":false,"name":"iTRAQ4plex reporter+balance reagent O-acylated residue","synonyms":[{"name":"(4-methylpiperazin-1-yl)acetyl","type":"exact"}],"termid":"MOD:01713"}


id: SO:0001674
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A conserved region about 24-bp upstream of the start point of bacterial transcription units, involved with sigma factor 54.","definition_xrefs":["PMID:18331472"],"direct_ancestors":[{"relation_name":"is_a","term_name":"DNA_motif","termid":"SO:0000713"},{"relation_name":"part_of","term_name":"bacterial_RNApol_promoter_sigma54_element","termid":"SO:0001672"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"minus_24_signal","synonyms":[{"name":"minus 24 signal","type":"related"}],"termid":"SO:0001674"}


id: MOD:01006
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively substitutes two hydrogen atoms of an L-tyrosine residue with two bromine atoms.","definition_xrefs":["Unimod:534"],"direct_ancestors":[{"relation_name":"is_a","term_name":"brominated tyrosine","termid":"MOD:00988"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dibrominated tyrosine","synonyms":[{"name":"Br2Tyr","type":"exact"},{"name":"Dibromo","type":"related"}],"termid":"MOD:01006"}


id: PBO:0090832
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"histone H3-H4 chaperone Spt6","termid":"PBO:0090832"}


id: GO:0004108
data:
  {"annotated_genes":["SJAG_01922"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[95204],"is_not":false,"summary":null,"term":"GO:0004108"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: acetyl-CoA + H2O + oxaloacetate = citrate + CoA, where the acetyl group is added to the si-face of oxaloacetate; acetyl-CoA thus provides the two carbon atoms of the pro-S carboxymethyl group.","definition_xrefs":["EC:2.3.3.1"],"direct_ancestors":[{"relation_name":"is_a","term_name":"citrate synthase activity","termid":"GO:0036440"}],"gene_count":1,"genes_by_uniquename":{"SJAG_01922":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0016746"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016740","GO:0016746"],"is_obsolete":false,"name":"citrate (Si)-synthase activity","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["Reactome:R-HSA-70975","MetaCyc:CITSYN-RXN"],"synonyms":[{"name":"(R)-citric synthase activity","type":"related"},{"name":"acetyl-CoA:oxaloacetate C-acetyltransferase [thioester-hydrolysing, (pro-S)-carboxymethyl forming]","type":"related"},{"name":"citrate condensing enzyme activity","type":"related"},{"name":"citrate oxaloacetate-lyase ((pro-3S)-CH(2)COO(-)->acetyl-CoA) activity","type":"related"},{"name":"citrate oxaloacetate-lyase ((pro-3S)-CH2COO-rightacetyl-CoA)","type":"related"},{"name":"citrate oxaloacetate-lyase [(pro-3S)-CH2COOrightacetyl-CoA]","type":"related"},{"name":"citrate oxaloacetate-lyase, CoA-acetylating activity","type":"related"},{"name":"citrate synthase activity","type":"broad"},{"name":"citrate synthetase activity","type":"related"},{"name":"citric synthase activity","type":"related"},{"name":"citric-condensing enzyme activity","type":"related"},{"name":"citrogenase activity","type":"related"},{"name":"condensing enzyme activity","type":"broad"},{"name":"oxalacetic transacetase activity","type":"related"},{"name":"oxaloacetate transacetase activity","type":"related"}],"termid":"GO:0004108","terms_by_termid":{"GO:0004108":null}}


id: PBO:0084078
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"GTP-binding protein that couples the Ski complex and exosome; putative pseudo-translational GTPase involved in 3'-to-5' mRNA decay pathway; interacts with both the cytoplasmic exosome and the Ski complex; eRF3-like domain targets nonstop mRNA for degradation; null mutants have a superkiller phenotype; SKI7 has a paralog, HBS1, that arose from the whole genome duplication","termid":"PBO:0084078"}


id: GO:0051370
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Binding to Z-band alternatively spliced PDZ motif protein (ZASP). ZASP is a Z-band protein specifically expressed in heart and skeletal muscle. This protein contains N-terminal PDZ domain and C-terminal LIM domain.","definition_xrefs":["PMID:11699871","PMID:10427098"],"gene_count":0,"genotype_count":0,"name":"obsolete ZASP binding (obsolete GO:0051370)","synonyms":[{"name":"Z-band alternatively spliced PDZ-motif protein binding","type":"exact"},{"name":"ZASP binding","type":"exact"}],"termid":"GO:0051370"}


id: FYPO:0007544
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which the binding of one protein to a cohesin complex is normal (i.e. indistinguishable from wild type). The protein whose binding to the cohesin complex is assayed may be encoded by the mutated gene, or may be encoded by a different gene.","definition_xrefs":["PomBase:mah","PMID:33176147"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal protein complex binding","termid":"FYPO:0005232"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0000702"},{"rel_name":"is_a","termid":"FYPO:0000652"}],"interesting_parent_ids":["FYPO:0000702","FYPO:0000652","FYPO:0000257"],"is_obsolete":false,"name":"normal cohesin complex binding","termid":"FYPO:0007544"}


id: MOD:01693
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively replaces a residue alpha amino or imino hydrogen with a (pyrid-3-yl)acetyl group.","definition_xrefs":["OMSSA:107","PubMed:9276974","Unimod:25#N-term"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pyridylacetylated residue","termid":"MOD:00418"},{"relation_name":"is_a","term_name":"alpha-amino acylated residue","termid":"MOD:01696"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:00649"}],"interesting_parent_ids":["MOD:00649"],"is_obsolete":false,"name":"alpha-amino pyridylacetylated residue","synonyms":[{"name":"Pyridylacetyl","type":"related"},{"name":"ntermpeppyridyl","type":"exact"},{"name":"pyridylacetyl","type":"related"}],"termid":"MOD:01693"}


id: GO:0048069
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Establishment of a pattern of pigment in the eye of an organism.","definition_xrefs":["GOC:jid"],"direct_ancestors":[{"relation_name":"is_a","term_name":"developmental pigmentation","termid":"GO:0048066"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"eye pigmentation","secondary_identifiers":["Wikipedia:Eye_color"],"termid":"GO:0048069"}


id: MOD:00316
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-asparagine residue to N4,N4-dimethyl-L-asparagine.","definition_xrefs":["PubMed:14570711","PubMed:8783012","RESID:AA0311","PubMed:12964758","Unimod:36#N"],"direct_ancestors":[{"relation_name":"is_a","term_name":"dimethylated residue","termid":"MOD:00429"},{"relation_name":"is_a","term_name":"N-methylated residue","termid":"MOD:00602"},{"relation_name":"is_a","term_name":"methylated asparagine","termid":"MOD:00673"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:00427"}],"interesting_parent_ids":["MOD:00427"],"is_obsolete":false,"name":"N4,N4-dimethyl-L-asparagine","synonyms":[{"name":"(2S)-2-amino-4-(dimethylamino)-4-oxobutanoic acid","type":"exact"},{"name":"2-amino-N4,N4-dimethylbutanediamic acid","type":"exact"},{"name":"Dimethyl","type":"related"},{"name":"MOD_RES N4,N4-dimethylasparagine","type":"exact"},{"name":"N(gamma),N(gamma)-dimethylasparagine","type":"exact"},{"name":"N4,N4-dimethyl-L-asparagine","type":"exact"},{"name":"N4,N4-dimethylated L-asparagine","type":"exact"},{"name":"N4Me2Asn","type":"exact"},{"name":"beta-dimethylasparagine","type":"related"},{"name":"di-Methylation","type":"related"}],"termid":"MOD:00316"}


id: GO:0048742
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of skeletal muscle fiber development. Muscle fibers are formed by the maturation of myotubes. They can be classed as slow, intermediate/fast or fast.","definition_xrefs":["GOC:jid","GOC:dph","GOC:mtg_muscle","GOC:sm"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of myotube differentiation","termid":"GO:0010830"},{"relation_name":"is_a","term_name":"regulation of cell development","termid":"GO:0060284"},{"relation_name":"regulates","term_name":"skeletal muscle fiber development","termid":"GO:0048741"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of skeletal muscle fiber development","synonyms":[{"name":"regulation of skeletal muscle fibre development","type":"exact"},{"name":"regulation of skeletal myofiber development","type":"exact"},{"name":"regulation of skeletal myofibre development","type":"exact"}],"termid":"GO:0048742"}


id: GO:1902680
data:
  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regulation of RNA biosynthetic process","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null,"GO_REF:0000108":null},"synonyms":[{"name":"activation of RNA anabolism","type":"narrow"},{"name":"activation of RNA biosynthesis","type":"narrow"},{"name":"activation of RNA biosynthetic process","type":"narrow"},{"name":"activation of RNA formation","type":"narrow"},{"name":"activation of RNA synthesis","type":"narrow"},{"name":"positive regulation of RNA anabolism","type":"exact"},{"name":"positive regulation of RNA biosynthesis","type":"exact"},{"name":"positive regulation of RNA formation","type":"exact"},{"name":"positive regulation of RNA synthesis","type":"exact"},{"name":"up regulation of RNA anabolism","type":"exact"},{"name":"up regulation of RNA biosynthesis","type":"exact"},{"name":"up regulation of RNA biosynthetic process","type":"exact"},{"name":"up regulation of RNA formation","type":"exact"},{"name":"up regulation of RNA synthesis","type":"exact"},{"name":"up-regulation of RNA anabolism","type":"exact"},{"name":"up-regulation of RNA biosynthesis","type":"exact"},{"name":"up-regulation of RNA biosynthetic process","type":"exact"},{"name":"up-regulation of RNA formation","type":"exact"},{"name":"up-regulation of RNA synthesis","type":"exact"},{"name":"upregulation of RNA anabolism","type":"exact"},{"name":"upregulation of RNA biosynthesis","type":"exact"},{"name":"upregulation of RNA biosynthetic process","type":"exact"},{"name":"upregulation of RNA formation","type":"exact"},{"name":"upregulation of RNA synthesis","type":"exact"}],"termid":"GO:1902680","terms_by_termid":{"GO:0032786":null,"GO:0032968":null,"GO:0045893":null,"GO:0045899":null,"GO:0045943":null,"GO:0045944":null,"GO:0060261":null,"GO:0060963":null,"GO:1904595":null}}


id: GO:0010126
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving mycothiol, which consists of N-acetyl-L-cysteine linked to a pseudodisaccharide, D-glucosamine and myo-inositol. Mycothiol is produced in actinomycetes like mycobacteria and serves similar functions to glutathione.","definition_xrefs":["GOC:pz"],"direct_ancestors":[{"relation_name":"is_a","term_name":"sulfur compound metabolic process","termid":"GO:0006790"},{"relation_name":"is_a","term_name":"glycoside metabolic process","termid":"GO:0016137"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006790"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006790","GO:0008150"],"is_obsolete":false,"name":"mycothiol metabolic process","synonyms":[{"name":"mycothiol metabolism","type":"exact"}],"termid":"GO:0010126"}


id: GO:0005803
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"OBSOLETE. A small subcellular vesicle, or granule, surrounded by a single-layered membrane; formed from the Golgi apparatus and contains a highly concentrated protein destined for secretion.","definition_xrefs":["ISBN:0198547684"],"gene_count":0,"genotype_count":0,"name":"obsolete secretory vesicle (obsolete GO:0005803)","synonyms":[{"name":"secretory vesicle","type":"exact"},{"name":"transition vesicle","type":"narrow"}],"termid":"GO:0005803"}


id: PATO:0001048
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0001048 relative resistance (obsolete PATO:0001048)","termid":"PATO:0001048"}


id: PBO:0041861
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"caspase 7","termid":"PBO:0041861"}


id: PBO:0055371
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2800","termid":"PBO:0055371"}


id: PBO:0000693
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"F1-ATPase beta subunit Atp2","termid":"PBO:0000693"}


id: GO:1900374
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. A regulation of transcription from RNA polymerase II promoter that results in positive regulation of mating type switching.","definition_xrefs":["GOC:go_curators","GOC:TermGenie","PMID:8804308"],"gene_count":0,"genotype_count":0,"name":"obsolete positive regulation of mating type switching by regulation of transcription from RNA polymerase II promoter (obsolete GO:1900374)","synonyms":[{"name":"activation of mating type switching by regulation of transcription from RNA polymerase II promoter","type":"narrow"},{"name":"stimulation of mating type switching by regulation of transcription from RNA polymerase II promoter","type":"narrow"},{"name":"up regulation of mating type switching by regulation of transcription from RNA polymerase II promoter","type":"exact"},{"name":"up-regulation of mating type switching by regulation of transcription from RNA polymerase II promoter","type":"exact"},{"name":"upregulation of mating type switching by regulation of transcription from RNA polymerase II promoter","type":"exact"}],"termid":"GO:1900374"}


id: PBO:0060855
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NEK2 pseudogene 3","termid":"PBO:0060855"}


id: GO:0030637
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The chemical reactions and pathways resulting in the breakdown of derivatives of acetic acid.","definition_xrefs":["GOC:ai"],"gene_count":0,"genotype_count":0,"name":"obsolete acetate derivative catabolic process (obsolete GO:0030637)","synonyms":[{"name":"acetate derivative breakdown","type":"exact"},{"name":"acetate derivative catabolic process","type":"exact"},{"name":"acetate derivative catabolism","type":"exact"},{"name":"acetate derivative degradation","type":"exact"}],"termid":"GO:0030637"}


id: GO:0102657
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 1-18:1-2-16:0-monogalactosyldiacylglycerol + O2 + a reduced electron acceptor = 1-18:1-2-16:1-monogalactosyldiacylglycerol + 2 H2O + an oxidized electron acceptor.","definition_xrefs":["GOC:pz","PMID:15579662"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water","termid":"GO:0016717"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016491"],"is_obsolete":false,"name":"1-18:1-2-16:0-monogalactosyldiacylglycerol palmitoyl-lipid 7-desaturase activity","secondary_identifiers":["MetaCyc:RXN-1728","EC:1.14.19.42"],"termid":"GO:0102657"}


id: PBO:0050544
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"HPS1 antisense RNA 1","termid":"PBO:0050544"}


id: PBO:0080450
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"VSIG10L antisense RNA 1","termid":"PBO:0080450"}


id: GO:0033750
data:
  {"annotated_genes":["SJAG_01449","SJAG_01013","SJAG_03012","SJAG_01065","SJAG_03593","SJAG_00178","SJAG_01358","SJAG_03719","SJAG_03729","SJAG_03882","SJAG_01338","SJAG_02274","SJAG_04940","SJAG_00471","SJAG_04721","SJAG_04308","SJAG_02210","SJAG_04148","SJAG_03496","SJAG_03658","SJAG_01391","SJAG_02250","SJAG_01339","SJAG_02757","SJAG_00753","SJAG_04379","SJAG_03299"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[95379,114274,112318,113765,86611,98810,101619,97666,85288],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0000055"},{"annotations":[98811,92775,95566,86612],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0000056"},{"annotations":[96178,92768,112252,99784,90637,98452,101234,84504,87255,107406,91812,89624,97178,102035,106372,99223],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0000054"}]},"cv_name":"biological_process","definition":"A process in which a ribosome is transported to, and/or maintained in, a specific location.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"organelle localization","termid":"GO:0051640"}],"gene_count":27,"genes_by_uniquename":{"SJAG_00178":null,"SJAG_00471":null,"SJAG_00753":null,"SJAG_01013":null,"SJAG_01065":null,"SJAG_01338":null,"SJAG_01339":null,"SJAG_01358":null,"SJAG_01391":null,"SJAG_01449":null,"SJAG_02210":null,"SJAG_02250":null,"SJAG_02274":null,"SJAG_02757":null,"SJAG_03012":null,"SJAG_03299":null,"SJAG_03496":null,"SJAG_03593":null,"SJAG_03658":null,"SJAG_03719":null,"SJAG_03729":null,"SJAG_03882":null,"SJAG_04148":null,"SJAG_04308":null,"SJAG_04379":null,"SJAG_04721":null,"SJAG_04940":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0051179"}],"interesting_parent_ids":["GO:0051179","GO:0008150"],"is_obsolete":false,"name":"ribosome localization","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["GO:0033753"],"synonyms":[{"name":"establishment of ribosome localisation","type":"related"},{"name":"establishment of ribosome localization","type":"related"},{"name":"ribosome localisation","type":"related"}],"termid":"GO:0033750","terms_by_termid":{"GO:0000054":null,"GO:0000055":null,"GO:0000056":null}}


id: PBO:0052972
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"L3MBTL2 antisense RNA 1","termid":"PBO:0052972"}


id: _global:has_characteristic
data:
  {"annotation_feature_type":"gene","cv_name":"external","definition":"Inverse of characteristic_of","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"has_characteristic","secondary_identifiers":["RO:0000053"],"termid":"_global:has_characteristic"}


id: PR:Q9C1W9
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- adl1 gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q9C1W9"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DNA ligase 3 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC713.06","synonyms":[{"name":"DNA ligase III (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-adl1","type":"exact"},{"name":"polydeoxyribonucleotide synthase [ATP] 3 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:Q9C1W9"}


id: PBO:0075564
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SPHK1 interactor, AKAP domain containing","termid":"PBO:0075564"}


id: PBO:0030704
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_growth_on_CCCP","termid":"PBO:0030704"}


id: PBO:0042644
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chromodomain Y-linked 19 pseudogene","termid":"PBO:0042644"}


id: GO:0014811
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of skeletal muscle contraction via the regulation of the release of sequestered calcium ion by sarcoplasmic reticulum into cytosol. The sarcoplasmic reticulum is the endoplasmic reticulum of striated muscle, specialised for the sequestration of calcium ions that are released upon receipt of a signal relayed by the T tubules from the neuromuscular junction.","definition_xrefs":["GOC:mtg_muscle"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of skeletal muscle contraction by regulation of release of sequestered calcium ion","termid":"GO:0014809"},{"relation_name":"is_a","term_name":"negative regulation of striated muscle contraction","termid":"GO:0045988"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0023052"},{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0055085"}],"interesting_parent_ids":["GO:0023052","GO:0008150","GO:0055085","GO:0006810"],"is_obsolete":false,"name":"negative regulation of skeletal muscle contraction by regulation of release of sequestered calcium ion","termid":"GO:0014811"}


id: PBO:0076628
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TANK binding kinase 1","termid":"PBO:0076628"}


id: PBO:0065058
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"proline and arginine rich end leucine rich repeat protein","termid":"PBO:0065058"}


id: PBO:0036537
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"meiotic R3H and G-patch domain protein Sqs2","termid":"PBO:0036537"}


id: GO:2000712
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that modulates the frequency, rate or extent of maintenance of meiotic sister chromatid cohesion along the chromosome arms.","definition_xrefs":["GOC:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete regulation of maintenance of meiotic sister chromatid cohesion, arms (obsolete GO:2000712)","synonyms":[{"name":"regulation of maintenance of meiotic sister chromatin cohesion along arms","type":"exact"},{"name":"regulation of maintenance of sister chromatin cohesion along arms at meiosis I","type":"exact"}],"termid":"GO:2000712"}


id: PBO:0050597
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"hydroxy-delta-5-steroid dehydrogenase, 3 beta, pseudogene 2","termid":"PBO:0050597"}


id: PR:Q09892
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A mitogen-activated protein kinase HOG1 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PMID:7501024","PomBase:MAH"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mitogen-activated protein kinase HOG1","termid":"PR:000027499"},{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitogen-activated protein kinase sty1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC24B11.06c","secondary_identifiers":["PR:000027500","UniProtKB:Q09892"],"synonyms":[{"name":"HOG1","type":"related"},{"name":"PHH1","type":"related"},{"name":"SPAC24B11.06C","type":"related"},{"name":"SPC1","type":"related"},{"name":"Spom972h-HOG1","type":"exact"}],"termid":"PR:Q09892"}


id: PBO:0044516
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"D-2-hydroxyglutarate dehydrogenase","termid":"PBO:0044516"}


id: PBO:0056945
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 10a","termid":"PBO:0056945"}


id: GO:0070911
data:
  {"annotated_genes":["SJAG_04778"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[83644],"is_not":false,"summary":null,"term":"GO:0070911"}]},"cv_name":"biological_process","definition":"The nucleotide-excision repair process in which DNA lesions are removed from nontranscribed strands and from transcriptionally silent regions over the entire genome.","definition_xrefs":["PMID:10197977","PMID:18794354"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nucleotide-excision repair","termid":"GO:0006289"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04778":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006281"},{"rel_name":"is_a","termid":"GO:0006259"}],"interesting_parent_ids":["GO:0006281","GO:0006259","GO:0008150"],"is_obsolete":false,"name":"global genome nucleotide-excision repair","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"GG-NER","type":"exact"},{"name":"GGR","type":"exact"},{"name":"global genome NER","type":"exact"},{"name":"global genomic nucleotide-excision repair","type":"exact"},{"name":"global genomic repair","type":"exact"}],"termid":"GO:0070911","terms_by_termid":{"GO:0070911":null}}


id: PBO:0059544
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrially encoded tRNA-Leu (UUA/G) 1","termid":"PBO:0059544"}


id: PBO:0069018
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 262, pseudogene","termid":"PBO:0069018"}


id: FYPO:0004625
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A microtubule cytoskeleton organization phenotype observed in the vegetative growth phase of the life cycle in which post-anaphase microtubule array organization is abnormal. Post-anaphase microtubule array organization is a cellular process that results in the assembly, arrangement of constituent parts, or disassembly of the post-anaphase microtubule array.","definition_xrefs":["PomBase:mah","PMID:1904186"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal microtubule cytoskeleton organization during vegetative growth","termid":"FYPO:0001350"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000054"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0001985","FYPO:0000054","FYPO:0001320","FYPO:0000002"],"is_obsolete":false,"name":"abnormal post-anaphase microtubule array organization","synonyms":[{"name":"abnormal PAA organization","type":"exact"},{"name":"abnormal post-anaphase array organization","type":"exact"},{"name":"abnormal post-anaphase microtubule array organisation","type":"exact"},{"name":"abnormal post-anaphase microtubule array organization during mitotic cell cycle","type":"related"},{"name":"abnormal post-anaphase microtubule array organization during vegetative growth","type":"exact"}],"termid":"FYPO:0004625"}


id: PBO:0086133
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein required for maturation of mitochondrial [4Fe-4S] proteins; functions in a complex with Isa1p and possibly Iba57p; localizes to the mitochondrial intermembrane space, overexpression of ISA2 suppresses grx5 mutations","termid":"PBO:0086133"}


id: GO:0015756
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which fucose is transported across a lipid bilayer, from one side of a membrane to the other. Fucose is 6-deoxygalactose and has two enantiomers, D-fucose and L-fucose.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hexose transmembrane transport","termid":"GO:0008645"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0055085"},{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0055085","GO:0006810","GO:0051179","GO:0008150"],"is_obsolete":false,"name":"fucose transmembrane transport","synonyms":[{"name":"fucose transport","type":"related"}],"termid":"GO:0015756"}


id: GO:0070990
data:
  {"annotated_genes":["SJAG_02558","SJAG_03291","SJAG_02279","SJAG_04914"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[82892,90587],"is_not":false,"summary":null,"term":"GO:0070990"},{"annotations":[87335,109912],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1990446"},{"annotations":[109913],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1990447"}]},"cv_name":"molecular_function","definition":"Binding to a small nuclear ribonucleoprotein particle.","definition_xrefs":["GOC:mah","GOC:BHF","GOC:rl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ribonucleoprotein complex binding","termid":"GO:0043021"}],"gene_count":4,"genes_by_uniquename":{"SJAG_02279":null,"SJAG_02558":null,"SJAG_03291":null,"SJAG_04914":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005488"}],"interesting_parent_ids":["GO:0003674","GO:0005488"],"is_obsolete":false,"name":"snRNP binding","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0070990","terms_by_termid":{"GO:0070990":null,"GO:1990446":null,"GO:1990447":null}}


id: PBO:0015229
data:
  {"annotation_feature_type":"gene","cv_name":"complementation","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"functionally complement S. cerevisiae CET1 when coexpressed with pombe ceg1","termid":"PBO:0015229"}


id: PBO:0044596
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DDB1 and CUL4 associated factor 4 like 2","termid":"PBO:0044596"}


id: FYPO:0001222
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A physical cellular phenotype observed in the vegetative growth phase of the life cycle in which a cell contains two nuclei.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"multinucleate vegetative cell","termid":"FYPO:0000061"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001985","FYPO:0001320"],"is_obsolete":false,"name":"binucleate vegetative cell","synonyms":[{"name":"binucleate cells during vegetative growth","type":"exact"},{"name":"binucleate during vegetative growth","type":"exact"},{"name":"binucleate vegetative cell during mitotic cell cycle","type":"related"}],"termid":"FYPO:0001222"}


id: GO:1990453
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A protein complex involved in the disassembly and subsequent reassembly of nucleosomes. It associates with the coding region of transcriptionally active genes where it interacts with the RNA polymerase II and affects its processivity during co-transcriptional RNA processing and maturation. It exists as a functionally independent part of the NuA4 complex.","definition_xrefs":["GOC:bhm","PMID:24843044"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nuclear protein-containing complex","termid":"GO:0140513"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0005634"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005634","GO:0005575","GO:0032991"],"is_obsolete":false,"name":"nucleosome disassembly/reassembly complex","synonyms":[{"name":"eaf5/7/3 complex","type":"narrow"}],"termid":"GO:1990453"}


id: PBO:0059204
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MAS related GPR family member X11, pseudogene","termid":"PBO:0059204"}


id: PBO:0091635
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sub-telomeric 5Tm protein family Ftm4","termid":"PBO:0091635"}


id: PBO:0083014
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DEAH-box RNA helicase; involved in the second catalytic step of splicing and in exon ligation; exhibits ATP-dependent RNA unwinding activity; mediates the release of Yju2p and Cwc25p in the second step; in the absence of ATP, stabilizes the binding of Cwc25p to the spliceosome in the first catalytic step; missense mutation in human ortholog DHX38 associated with early-onset retinitis pigmentosa","termid":"PBO:0083014"}


id: PBO:0058241
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 4528","termid":"PBO:0058241"}


id: PBO:0071990
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein S6 pseudogene 19","termid":"PBO:0071990"}


id: GO:0033336
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of the caudal fin over time, from its formation to the mature structure.","definition_xrefs":["GOC:dgh"],"direct_ancestors":[{"relation_name":"is_a","term_name":"medial fin development","termid":"GO:0033338"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"caudal fin development","termid":"GO:0033336"}


id: GO:0006545
data:
  {"annotated_genes":["SJAG_01766","SJAG_03914","SJAG_02450"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[89836],"is_not":false,"summary":null,"term":"GO:0006545"},{"annotations":[90128,86829],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0019264"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of glycine, aminoethanoic acid.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"glycine metabolic process","termid":"GO:0006544"},{"relation_name":"is_a","term_name":"serine family amino acid biosynthetic process","termid":"GO:0009070"}],"gene_count":3,"genes_by_uniquename":{"SJAG_01766":null,"SJAG_02450":null,"SJAG_03914":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006520"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0044281","GO:0006520","GO:0008150"],"is_obsolete":false,"name":"glycine biosynthetic process","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["MetaCyc:GLYCINE-SYN2-PWY"],"synonyms":[{"name":"glycine anabolism","type":"exact"},{"name":"glycine biosynthesis","type":"exact"},{"name":"glycine formation","type":"exact"},{"name":"glycine synthesis","type":"exact"}],"termid":"GO:0006545","terms_by_termid":{"GO:0006545":null,"GO:0019264":null}}


id: GO:0030351
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: inositol-1,3,4,5,6-pentakisphosphate + H2O = inositol-1,4,5,6-tetrakisphosphate + phosphate.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"inositol pentakisphosphate phosphatase activity","termid":"GO:0052827"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0016788"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016787","GO:0016788","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"inositol-1,3,4,5,6-pentakisphosphate 3-phosphatase activity","secondary_identifiers":["Reactome:R-HSA-1855163"],"termid":"GO:0030351"}


id: GO:0044563
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process that begins with venom being forced into an organism by the bite or sting of another organism, and ends with a resultant slowing of the activation kinetics of the activity of a voltage-gated potassium channel in the bitten/stung organism.","definition_xrefs":["GOC:jl","GOC:fj"],"direct_ancestors":[{"relation_name":"is_a","term_name":"envenomation resulting in negative regulation of voltage-gated potassium channel activity in another organism","termid":"GO:0044562"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"envenomation resulting in slowing of activation kinetics of voltage-gated potassium channel in another organism","synonyms":[{"name":"envenomation resulting in slowing of activation kinetics of voltage-gated potassium channel in other organism","type":"exact"},{"name":"voltage-dependence of activation shift (to the left)","type":"exact"}],"termid":"GO:0044563"}


id: PBO:0044409
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cytochrome P450 family 2 subfamily F member 2, pseudogene","termid":"PBO:0044409"}


id: PBO:0000422
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uridine kinase (predicted)","termid":"PBO:0000422"}


id: GO:1901470
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of syringal lignin catabolic process.","definition_xrefs":["GOC:TermGenie","GOC:mengo_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of cellular catabolic process","termid":"GO:0031330"},{"relation_name":"is_a","term_name":"regulation of syringal lignin catabolic process","termid":"GO:1901469"},{"relation_name":"negatively_regulates","term_name":"syringal lignin catabolic process","termid":"GO:1901065"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"negatively_regulates","termid":"GO:0044248"},{"rel_name":"regulates","termid":"GO:0044248"},{"rel_name":"negatively_regulates","termid":"GO:0019748"},{"rel_name":"regulates","termid":"GO:0019748"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0044248","GO:0019748","GO:0008150"],"is_obsolete":false,"name":"negative regulation of syringal lignin catabolic process","synonyms":[{"name":"down regulation of S-lignin catabolic process","type":"exact"},{"name":"down regulation of syringal lignin breakdown","type":"exact"},{"name":"down regulation of syringal lignin catabolic process","type":"exact"},{"name":"down regulation of syringal lignin catabolism","type":"exact"},{"name":"down regulation of syringal lignin degradation","type":"exact"},{"name":"down-regulation of S-lignin catabolic process","type":"exact"},{"name":"down-regulation of syringal lignin breakdown","type":"exact"},{"name":"down-regulation of syringal lignin catabolic process","type":"exact"},{"name":"down-regulation of syringal lignin catabolism","type":"exact"},{"name":"down-regulation of syringal lignin degradation","type":"exact"},{"name":"downregulation of S-lignin catabolic process","type":"exact"},{"name":"downregulation of syringal lignin breakdown","type":"exact"},{"name":"downregulation of syringal lignin catabolic process","type":"exact"},{"name":"downregulation of syringal lignin catabolism","type":"exact"},{"name":"downregulation of syringal lignin degradation","type":"exact"},{"name":"inhibition of S-lignin catabolic process","type":"exact"},{"name":"inhibition of syringal lignin breakdown","type":"exact"},{"name":"inhibition of syringal lignin catabolic process","type":"narrow"},{"name":"inhibition of syringal lignin catabolism","type":"exact"},{"name":"inhibition of syringal lignin degradation","type":"exact"},{"name":"negative regulation of S-lignin catabolic process","type":"exact"},{"name":"negative regulation of syringal lignin breakdown","type":"exact"},{"name":"negative regulation of syringal lignin catabolism","type":"exact"},{"name":"negative regulation of syringal lignin degradation","type":"exact"}],"termid":"GO:1901470"}


id: PBO:0075651
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SPRY domain containing 7 pseudogene 1","termid":"PBO:0075651"}


id: FYPO:0000457
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which histone methylation is abnormal. All histone methylation may be affected, or methylation of specific sites on specific histones may be altered.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal histone modification during vegetative growth","termid":"FYPO:0000330"},{"relation_name":"is_a","term_name":"abnormal protein methylation during vegetative growth","termid":"FYPO:0006122"},{"relation_name":"is_a","term_name":"abnormal histone methylation","termid":"FYPO:0006870"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0002274"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0002494"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0002274","FYPO:0002494","FYPO:0000002","FYPO:0005447","FYPO:0001320"],"is_obsolete":false,"name":"abnormal histone methylation during vegetative growth","synonyms":[{"name":"abnormal histone methylation during mitotic cell cycle","type":"related"}],"termid":"FYPO:0000457"}


id: PATO:0000013
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0000013 relative age (obsolete PATO:0000013)","termid":"PATO:0000013"}


id: PBO:0079206
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tumor suppressing subtransferable candidate 2 (pseudogene)","termid":"PBO:0079206"}


id: FYECO:0000072
data:
  {"annotation_feature_type":"gene","cv_name":"fission_yeast_phenotype_condition","definition":"Experiments were performed in minimal medium where glycerol is the main carbon source, but the medium also contained trace amounts of glucose (<0.1%).","definition_xrefs":["PomBase:al"],"direct_ancestors":[{"relation_name":"is_a","term_name":"grouping defined medium","termid":"FYECO:0000013"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glycerol MM with trace glucose","synonyms":[{"name":"glycerol main carbon source + very low glucose MM","type":"exact"},{"name":"glycerol minimal medium with trace glucose","type":"exact"}],"termid":"FYECO:0000072"}


id: PBO:0028707
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_number_of_double-strand_break_sites_during_meiotic_cell_cycle","termid":"PBO:0028707"}


id: PBO:0083287
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Dubious open reading frame; unlikely to encode a functional protein, based on available experimental and comparative sequence data; not conserved in other Saccharomyces species; overlaps the verified gene GPD1; deletion confers sensitivity to GSAO; deletion in cyr1 mutant results in loss of stress resistance","termid":"PBO:0083287"}


id: PBO:0090204
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TOG/XMAP215 microtubule plus end tracking polymerase Alp14","termid":"PBO:0090204"}


id: SO:0001105
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"Residues which interact with a ligand.","definition_xrefs":["EBIBS:GAR"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ligand_binding_site","termid":"SO:0001657"},{"relation_name":"is_a","term_name":"molecular_contact_region","termid":"SO:0100002"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"SO:0000839"}],"interesting_parent_ids":["SO:0000839"],"is_obsolete":false,"name":"polypeptide_ligand_contact","secondary_identifiers":["BS:00157"],"synonyms":[{"name":"polypeptide ligand contact","type":"exact"},{"name":"protein-ligand interaction","type":"related"}],"termid":"SO:0001105"}


id: PBO:0091026
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cytoskeleton adaptor for Rga7 GTPase activator Rng10","termid":"PBO:0091026"}


id: GO:0062158
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: chloride(out) + proton(in) = chloride(in) + proton(out).","definition_xrefs":["PMID:14985752"],"direct_ancestors":[{"relation_name":"is_a","term_name":"solute:inorganic anion antiporter activity","termid":"GO:0005452"},{"relation_name":"is_a","term_name":"proton transmembrane transporter activity","termid":"GO:0015078"},{"relation_name":"is_a","term_name":"chloride transmembrane transporter activity","termid":"GO:0015108"},{"relation_name":"is_a","term_name":"active monoatomic ion transmembrane transporter activity","termid":"GO:0022853"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0022857"}],"interesting_parent_ids":["GO:0022857","GO:0005215","GO:0003674"],"is_obsolete":false,"name":"chloride:proton antiporter activity","termid":"GO:0062158"}


id: PR:O59799
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- coa4 gene.","definition_xrefs":["PRO:DNx","UniProtKB:O59799"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"coiled-coil-helix-coiled-coil-helix domain-containing protein C550.01c (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC550.01c","synonyms":[{"name":"Spom972h-coa4","type":"exact"}],"termid":"PR:O59799"}


id: PBO:0061845
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"oncoprotein induced transcript 3","termid":"PBO:0061845"}


id: PR:Q8WZK5
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPBC839.02 gene.","definition_xrefs":["UniProtKB:Q8WZK5","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"arrestin-related trafficking adapter C839.02 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC839.02","synonyms":[{"name":"Spom972h-SPBC839.02","type":"exact"}],"termid":"PR:Q8WZK5"}


id: PR:O42853
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- rtr1 gene.","definition_xrefs":["UniProtKB:O42853","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA polymerase II subunit B1 CTD phosphatase rtr1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC23A1.16c","synonyms":[{"name":"RNA polymerase II-associated protein 2 homolog rtr1 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-rtr1","type":"exact"}],"termid":"PR:O42853"}


id: GO:1901870
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving ecgonone methyl ester.","definition_xrefs":["PMID:22665766","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular ketone metabolic process","termid":"GO:0042180"},{"relation_name":"is_a","term_name":"tropane alkaloid metabolic process","termid":"GO:0046448"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0044281","GO:0008150"],"is_obsolete":false,"name":"ecgonone methyl ester metabolic process","synonyms":[{"name":"ecgonone methyl ester metabolism","type":"exact"}],"termid":"GO:1901870"}


id: GO:0052111
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which an organism effects a change that impairs the structure or function of an anatomical structure of the host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction.","definition_xrefs":["GOC:mtg_pamgo_17jul06"],"direct_ancestors":[{"relation_name":"is_a","term_name":"disruption of anatomical structure in another organism","termid":"GO:0141060"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"symbiont-mediated disruption of host anatomical structure","synonyms":[{"name":"cytopathogenic effect","type":"related"},{"name":"disruption by symbiont of host anatomical structure","type":"exact"},{"name":"modification by symbiont of host anatomical structure","type":"exact"},{"name":"modification by symbiont of host structure","type":"related"}],"termid":"GO:0052111"}


id: PR:P36622
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- ste4 gene.","definition_xrefs":["UniProtKB:P36622","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sexual differentiation protein ste4 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC1565.04c","synonyms":[{"name":"Spom972h-ste4","type":"exact"}],"termid":"PR:P36622"}


id: GO:0090306
data:
  {"annotated_genes":["SJAG_04745","SJAG_03073","SJAG_01613","SJAG_01546"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[90419,92466,94971],"is_not":false,"summary":null,"term":"GO:0090306"},{"annotations":[94972,97216],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0140642"}]},"cv_name":"biological_process","definition":"The aggregation, arrangement and bonding together of a set of components to form the spindle that contributes to the process of meiosis.","definition_xrefs":["GOC:tb","GOC:vw"],"direct_ancestors":[{"relation_name":"is_a","term_name":"meiotic spindle organization","termid":"GO:0000212"},{"relation_name":"is_a","term_name":"spindle assembly","termid":"GO:0051225"},{"relation_name":"part_of","term_name":"meiotic chromosome segregation","termid":"GO:0045132"}],"gene_count":4,"genes_by_uniquename":{"SJAG_01546":null,"SJAG_01613":null,"SJAG_03073":null,"SJAG_04745":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0007049"},{"rel_name":"part_of","termid":"GO:0140013"},{"rel_name":"part_of","termid":"GO:0044085"},{"rel_name":"is_a","termid":"GO:0007010"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0000226"}],"interesting_parent_ids":["GO:0007049","GO:0044085","GO:0007010","GO:0008150","GO:0140013","GO:0000226"],"is_obsolete":false,"name":"meiotic spindle assembly","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"spindle assembly involved in meiosis","type":"exact"}],"termid":"GO:0090306","terms_by_termid":{"GO:0090306":null,"GO:0140642":null}}


id: PBO:0078213
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"T cell receptor beta variable 7-6","termid":"PBO:0078213"}


id: PBO:0016046
data:
  {"annotation_feature_type":"gene","cv_name":"misc","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"snu3 and snu32 RNAs present at similar levels","termid":"PBO:0016046"}


id: GO:0102742
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: H+ + 3,4-dihydroxyphenylpyruvate + NADPH = (2R)-3-(3,4-dihydroxyphenyl)lactate + NADP.","definition_xrefs":["EC:1.1.1.237","GOC:pz"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor","termid":"GO:0016616"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016491","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"R(+)-3,4-dihydroxyphenyllactate:NADP+ oxidoreductase activity","secondary_identifiers":["MetaCyc:RXN-7632"],"termid":"GO:0102742"}


id: PBO:0001826
data:
  {"annotation_feature_type":"gene","cv_name":"EC numbers","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"5.1.3.1","termid":"PBO:0001826"}


id: PBO:0017086
data:
  {"annotation_feature_type":"gene","cv_name":"warning","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"previously incorrectly annotated as the ortholog Sae2p","termid":"PBO:0017086"}


id: GO:0006517
data:
  {"annotated_genes":["SJAG_01858"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[89174],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1904380"}]},"cv_name":"biological_process","definition":"The removal of sugar residues from a glycosylated protein.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"glycoprotein metabolic process","termid":"GO:0009100"},{"relation_name":"is_a","term_name":"protein modification process","termid":"GO:0036211"}],"gene_count":1,"genes_by_uniquename":{"SJAG_01858":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"protein deglycosylation","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"glycoprotein deglycosylation","type":"exact"}],"termid":"GO:0006517","terms_by_termid":{"GO:1904380":null}}


id: RO:0002432
data:
  {"annotation_feature_type":"gene","cv_name":"relationship","definition":"c executes activity in d if and only if c enables p and p occurs_in d.  Assuming no action at a distance by gene products, if a gene product enables (is capable of) a process that occurs in some structure, it must have at least some part in that structure.","definition_xrefs":["GOC:dos","GOC:cjm"],"direct_ancestors":[{"relation_name":"is_a","term_name":"overlaps","termid":"RO:0002131"},{"relation_name":"is_a","term_name":"functionally_related_to","termid":"RO:0002328"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"is_active_in","synonyms":[{"name":"enables activity in","type":"exact"}],"termid":"RO:0002432"}


id: GO:0102584
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: cyanidin 3-O-[2''-O-xylosyl) 6''-O-(p-coumaroyl) glucoside + UDP-alpha-D-glucose = cyanidin 3-O-[2''-O-(xylosyl)-6''-O-(p-coumaroyl) glucoside] 5-O-glucoside + UDP + H+.","definition_xrefs":["PMID:15807784","GOC:pz"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hexosyltransferase activity","termid":"GO:0016758"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016757"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003824","GO:0016740","GO:0003674","GO:0016757"],"is_obsolete":false,"name":"cyanidin 3-O-[2''-O-(xylosyl)-6''-O-(p-coumaroyl) glucoside] 5-O-glucosyltransferase activity","secondary_identifiers":["MetaCyc:RXN-15330"],"termid":"GO:0102584"}


id: GO:0048555
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The nucleus of the generative cell, a cell contained within the pollen grain that will divide to produce two haploid sperm cells.","definition_xrefs":["GOC:tair_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nucleus","termid":"GO:0005634"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0005634"}],"interesting_parent_ids":["GO:0005634","GO:0005575"],"is_obsolete":false,"name":"generative cell nucleus","synonyms":[{"name":"male germ cell nucleus","type":"broad"},{"name":"sperm cell nucleus","type":"broad"}],"termid":"GO:0048555"}


id: PBO:0065416
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"proteasome subunit beta 3 pseudogene 2","termid":"PBO:0065416"}


id: PBO:0066839
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RN7SK pseudogene 139","termid":"PBO:0066839"}


id: PBO:0069807
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 1093, pseudogene","termid":"PBO:0069807"}


id: FYPO:0000320
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A phenotype in which a spore germinates to produce a cell of normal morphology (i.e. size, shape, and structure) that undergoes a single round of cell division, and then dies.","definition_xrefs":["PomBase:mah","PomBase:jh","PomBase:vw"],"direct_ancestors":[{"relation_name":"is_a","term_name":"inviable vegetative cell with normal cell morphology","termid":"FYPO:0002199"},{"relation_name":"is_a","term_name":"inviable after spore germination, single cell division","termid":"FYPO:0002280"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"has_part","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001312"},{"rel_name":"has_part","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0000004"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0000004","FYPO:0000257","FYPO:0000002","FYPO:0001320","FYPO:0001312"],"is_obsolete":false,"name":"inviable after spore germination, single cell division, normal cell morphology","synonyms":[{"name":"inviable following spore germination, single cell division, normal cell morphology","type":"exact"},{"name":"inviable germinated spore, single cell division, normal cell morphology","type":"exact"},{"name":"lethal after spore germination, single cell division, normal cell morphology","type":"exact"}],"termid":"FYPO:0000320"}


id: SO:1000041
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A chromosome structure variation whereby a transposition occurred within a chromosome.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"has_part","term_name":"translocation","termid":"SO:0000199"},{"relation_name":"has_part","term_name":"duplication","termid":"SO:1000035"},{"relation_name":"is_a","term_name":"chromosomal_transposition","termid":"SO:0000453"},{"relation_name":"is_a","term_name":"intrachromosomal_duplication","termid":"SO:1000038"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"intrachromosomal_transposition","synonyms":[{"name":"(Drosophila)Tp","type":"related"},{"name":"intrachromosomal transposition","type":"exact"}],"termid":"SO:1000041"}


id: PBO:0086361
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Putative ABC transporter","termid":"PBO:0086361"}


id: FYPO:0003260
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the occurrence of splicing of RNA primary transcripts at sites that are not normally frequently used is decreased.","definition_xrefs":["PMID:24210919","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased RNA splicing","termid":"FYPO:0003040"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000294"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0006551"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0006551","FYPO:0000002","FYPO:0005447","FYPO:0000294"],"is_obsolete":false,"name":"decreased RNA splicing at cryptic splice sites","synonyms":[{"name":"decreased RNA splicing at cryptic splice sites during mitotic cell cycle","type":"related"},{"name":"decreased RNA splicing at cryptic splice sites during vegetative growth","type":"exact"},{"name":"decreased RNA splicing of cryptic introns","type":"exact"},{"name":"reduced RNA splicing at cryptic splice sites","type":"exact"}],"termid":"FYPO:0003260"}


id: GO:1901289
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of succinyl-CoA.","definition_xrefs":["GOC:TermGenie","GOC:yaf","UniPathway:UPA00929"],"direct_ancestors":[{"relation_name":"is_a","term_name":"succinyl-CoA metabolic process","termid":"GO:0006104"},{"relation_name":"is_a","term_name":"purine ribonucleotide catabolic process","termid":"GO:0009154"},{"relation_name":"is_a","term_name":"ribonucleoside bisphosphate catabolic process","termid":"GO:0034031"},{"relation_name":"is_a","term_name":"purine nucleoside bisphosphate catabolic process","termid":"GO:0034034"},{"relation_name":"is_a","term_name":"sulfur compound catabolic process","termid":"GO:0044273"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006790"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0055086"},{"rel_name":"is_a","termid":"GO:0044248"}],"interesting_parent_ids":["GO:0008150","GO:0044281","GO:0055086","GO:0044248","GO:0006790"],"is_obsolete":false,"name":"succinyl-CoA catabolic process","synonyms":[{"name":"succinyl-CoA breakdown","type":"exact"},{"name":"succinyl-CoA catabolism","type":"exact"},{"name":"succinyl-CoA degradation","type":"exact"}],"termid":"GO:1901289"}


id: PBO:0064200
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"placenta associated 8","termid":"PBO:0064200"}


id: GO:0018125
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The methylation of peptidyl-cysteine to form peptidyl-S-methyl-L-cysteine.","definition_xrefs":["RESID:AA0234"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein methylation","termid":"GO:0006479"},{"relation_name":"is_a","term_name":"peptidyl-cysteine modification","termid":"GO:0018198"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"peptidyl-cysteine methylation","termid":"GO:0018125"}


id: PBO:0017639
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CENP-P ortholog Fta2","termid":"PBO:0017639"}


id: PR:O14358
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- rsm27 gene.","definition_xrefs":["PRO:DNx","UniProtKB:O14358"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"37S ribosomal protein S27, mitochondrial (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC30D10.12c","synonyms":[{"name":"Spom972h-rsm27","type":"exact"}],"termid":"PR:O14358"}


id: GO:0071484
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a light intensity stimulus.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to light intensity","termid":"GO:0009642"},{"relation_name":"is_a","term_name":"cellular response to light stimulus","termid":"GO:0071482"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cellular response to light intensity","termid":"GO:0071484"}


id: GO:1990786
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a double-stranded DNA stimulus.","definition_xrefs":["PMID:10051633"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular response to organic cyclic compound","termid":"GO:0071407"},{"relation_name":"is_a","term_name":"cellular response to nitrogen compound","termid":"GO:1901699"},{"relation_name":"is_a","term_name":"response to dsDNA","termid":"GO:1990784"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cellular response to dsDNA","termid":"GO:1990786"}


id: GO:0008315
data:
  {"annotated_genes":["SJAG_02771","SJAG_03854","SJAG_04287","SJAG_00364","SJAG_04280","SJAG_04332"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[102498,112143,86962],"is_not":false,"rel_names":["negatively_regulates","regulates"],"summary":null,"term":"GO:0033315"},{"annotations":[107530,112089],"is_not":false,"rel_names":["regulates","negatively_regulates"],"summary":null,"term":"GO:0110031"},{"annotations":[90190],"is_not":false,"rel_names":["regulates","positively_regulates"],"summary":null,"term":"GO:0110032"}]},"cv_name":"biological_process","definition":"The cell cycle process in which a cell progresses from meiotic G2 phase to M phase of meiosis I.","definition_xrefs":["PMID:15084480"],"direct_ancestors":[{"relation_name":"is_a","term_name":"meiotic cell cycle phase transition","termid":"GO:0044771"},{"relation_name":"is_a","term_name":"cell cycle G2/M phase transition","termid":"GO:0044839"},{"relation_name":"is_a","term_name":"meiosis I cell cycle process","termid":"GO:0061982"}],"gene_count":6,"genes_by_uniquename":{"SJAG_00364":null,"SJAG_02771":null,"SJAG_03854":null,"SJAG_04280":null,"SJAG_04287":null,"SJAG_04332":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0007049"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0007049","GO:0008150"],"is_obsolete":false,"name":"G2/MI transition of meiotic cell cycle","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"meiotic G2/MI phase transition","type":"exact"},{"name":"meiotic G2/MI transition","type":"exact"},{"name":"meiotic cell cycle G2/MI phase transition","type":"exact"}],"termid":"GO:0008315","terms_by_termid":{"GO:0033315":null,"GO:0110031":null,"GO:0110032":null}}


id: PBO:0068421
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA binding region (RNP1, RRM) containing 3 pseudogene 1","termid":"PBO:0068421"}


id: PBO:0005255
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"phosphomethylpyrimidine kinase (predicted)","termid":"PBO:0005255"}


id: PBO:0081670
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein 593","termid":"PBO:0081670"}


id: PBO:0087391
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Steryl ester hydrolase; one of three gene products (Yeh1p, Yeh2p, Tgl1p) responsible for steryl ester hydrolase activity and involved in sterol homeostasis; localized to lipid particle membranes; YEH1 has a paralog, YEH2, that arose from the whole genome duplication","termid":"PBO:0087391"}


id: PBO:0047642
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"FKBP prolyl isomerase 1B","termid":"PBO:0047642"}


id: PBO:0038772
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"actin related protein T1","termid":"PBO:0038772"}


id: PATO:0001955
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A shape quality inhering in a bearer by virtue of the bearer's being narrowly triangular, wider at the apex and tapering toward the base.","definition_xrefs":["wordreference:wordreference"],"direct_ancestors":[{"relation_name":"is_a","term_name":"triangular","termid":"PATO:0001875"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cuneate","synonyms":[{"name":"wedge-shaped","type":"exact"}],"termid":"PATO:0001955"}


id: PBO:0052110
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"potassium voltage-gated channel subfamily A regulatory beta subunit 3","termid":"PBO:0052110"}


id: PBO:0012231
data:
  {"annotation_feature_type":"gene","cv_name":"misc","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"swi5delta rhp57delta double mutant showed a repair profile very similar to that of the rhp51delta single mutant","termid":"PBO:0012231"}


id: PBO:0071126
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L21 pseudogene 128","termid":"PBO:0071126"}


id: PBO:0055329
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2757","termid":"PBO:0055329"}


id: GO:0090335
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the rate, frequency, or extent of brown fat cell differentiation. Brown fat cell differentiation is the process in which a relatively unspecialized cell acquires specialized features of a brown adipocyte, an animal connective tissue cell involved in adaptive thermogenesis. Brown adipocytes contain multiple small droplets of triglycerides and a high number of mitochondria.","definition_xrefs":["GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of fat cell differentiation","termid":"GO:0045598"},{"relation_name":"regulates","term_name":"brown fat cell differentiation","termid":"GO:0050873"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of brown fat cell differentiation","termid":"GO:0090335"}


id: GO:1905154
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of membrane invagination.","definition_xrefs":["GOC:bf","GO_REF:0000058","GOC:PARL","PMID:26589353","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of cellular component organization","termid":"GO:0051129"},{"relation_name":"is_a","term_name":"regulation of membrane invagination","termid":"GO:1905153"},{"relation_name":"negatively_regulates","term_name":"membrane invagination","termid":"GO:0010324"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"negatively_regulates","termid":"GO:0061024"},{"rel_name":"regulates","termid":"GO:0061024"}],"interesting_parent_ids":["GO:0061024","GO:0008150"],"is_obsolete":false,"name":"negative regulation of membrane invagination","synonyms":[{"name":"down regulation of membrane invagination","type":"exact"},{"name":"down-regulation of membrane invagination","type":"exact"},{"name":"downregulation of membrane invagination","type":"exact"},{"name":"inhibition of membrane invagination","type":"narrow"}],"termid":"GO:1905154"}


id: GO:0072688
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process in which a SHREC complex is transported to, or maintained in, a specific location.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein-containing complex localization","termid":"GO:0031503"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0051179"}],"interesting_parent_ids":["GO:0051179","GO:0008150"],"is_obsolete":false,"name":"SHREC complex localization","synonyms":[{"name":"SHREC complex localisation","type":"exact"},{"name":"establishment and maintenance of SHREC complex localization","type":"exact"}],"termid":"GO:0072688"}


id: GO:0098682
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"An electron dense structure that anchors a synaptic ribbon to the presynaptic membrane.","definition_xrefs":["PMID:15626493"],"direct_ancestors":[{"relation_name":"is_a","term_name":"intracellular non-membrane-bounded organelle","termid":"GO:0043232"},{"relation_name":"part_of","term_name":"ribbon synapse","termid":"GO:0097470"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"arciform density","termid":"GO:0098682"}


id: GO:0015332
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. (Was not defined before being made obsolete).","definition_xrefs":["GOC:ai"],"gene_count":0,"genotype_count":0,"name":"obsolete leucine/valine/isoleucine permease activity (obsolete GO:0015332)","synonyms":[{"name":"leucine/valine/isoleucine permease activity","type":"exact"}],"termid":"GO:0015332"}


id: PBO:0055811
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"LPGAT1 antisense RNA 1","termid":"PBO:0055811"}


id: GO:0036227
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which the mitotic cell cycle is halted during G2 phase as a result of deprivation of glucose.","definition_xrefs":["GOC:mtg_cell_cycle","PMID:958201","GOC:al","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of cell cycle","termid":"GO:0051726"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0007049"}],"interesting_parent_ids":["GO:0008150","GO:0007049"],"is_obsolete":false,"name":"mitotic G2 cell cycle arrest in response to glucose starvation","termid":"GO:0036227"}


id: PBO:0045328
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DOCK6 antisense RNA 1","termid":"PBO:0045328"}


id: GO:0044640
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. A process that begins with venom being forced into an organism by the bite or sting of another organism, and ends with the resultant negative regulation of complement activation via the lectin pathway in the bitten/stung organism.","definition_xrefs":["GOC:fj","GOC:jl","PMID:20837040"],"gene_count":0,"genotype_count":0,"name":"obsolete envenomation resulting in negative regulation of complement activation, lectin pathway in another organism (obsolete GO:0044640)","synonyms":[{"name":"envenomation resulting in negative regulation of complement activation, lectin pathway in other organism","type":"exact"}],"termid":"GO:0044640"}


id: PBO:0084889
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Mitochondrial transcription elongation factor; DEAD-box protein; required for efficient splicing of mitochondrial Group I and II introns; non-polar RNA helicase that also facilities strand annealing; promotes RNA folding by stabilizing an early assembly intermediate","termid":"PBO:0084889"}


id: PBO:0074134
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"solute carrier family 34 member 2","termid":"PBO:0074134"}


id: GO:0002338
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which B cells acquire the specialized features of B-1b B cells. B-1b B cells are B-1 cells that do not express CD5.","definition_xrefs":["ISBN:0781735149","GOC:jal"],"direct_ancestors":[{"relation_name":"is_a","term_name":"B-1 B cell differentiation","termid":"GO:0001923"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"B-1b B cell differentiation","synonyms":[{"name":"B-1b B cell development","type":"related"},{"name":"B-1b B lymphocyte differentiation","type":"exact"},{"name":"B-1b B-cell differentiation","type":"exact"},{"name":"B-1b B-lymphocyte differentiation","type":"exact"}],"termid":"GO:0002338"}


id: SO:0001721
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A kind of histone modification site, whereby the 27th residue (a lysine), from the start of the H3 histone protein is acylated.","definition_xrefs":["SO:ke"],"gene_count":0,"genotype_count":0,"name":"OBSOLETE SO:0001721 H3K27_acylation_site (obsolete SO:0001721)","synonyms":[{"name":"H3K27 acylation site","type":"exact"},{"name":"H3K27Ac","type":"related"}],"termid":"SO:0001721"}


id: PBO:0067521
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 664, pseudogene","termid":"PBO:0067521"}


id: PBO:0081995
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger and SCAN domain containing 26","termid":"PBO:0081995"}


id: GO:0000390
data:
  {"annotated_genes":["SJAG_00597","SJAG_02560","SJAG_03301","SJAG_00206","SJAG_05025"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[83245,84488,85709,100365,109918],"is_not":false,"summary":null,"term":"GO:0000390"}]},"cv_name":"biological_process","definition":"Disassembly of a spliceosomal complex with the ATP-dependent release of the product RNAs, one of which is composed of the joined exons. In cis splicing, the other product is the excised sequence, often a single intron, in a lariat structure.","definition_xrefs":["GOC:krc","ISBN:0879695897"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein-RNA complex disassembly","termid":"GO:0032988"},{"relation_name":"part_of","term_name":"mRNA splicing, via spliceosome","termid":"GO:0000398"}],"gene_count":5,"genes_by_uniquename":{"SJAG_00206":null,"SJAG_00597":null,"SJAG_02560":null,"SJAG_03301":null,"SJAG_05025":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0016071"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0016071","GO:0008150","GO:0010467"],"is_obsolete":false,"name":"spliceosomal complex disassembly","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["GO:0000392","GO:0000391"],"synonyms":[{"name":"U12-type spliceosome disassembly","type":"narrow"},{"name":"U2-type spliceosome disassembly","type":"narrow"},{"name":"spliceosome complex disassembly","type":"exact"},{"name":"spliceosome disassembly","type":"broad"}],"termid":"GO:0000390","terms_by_termid":{"GO:0000390":null}}


id: PBO:0085668
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein involved in nucleotide excision repair (NER); homologous to RAD4","termid":"PBO:0085668"}


id: PBO:0018138
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NMS complex subunit, Spc105/KNL-1 family member, blinkin, Spc7","termid":"PBO:0018138"}


id: PBO:0079866
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uracil-DNA glycosylase pseudogene 3","termid":"PBO:0079866"}


id: PBO:0071730
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L39 pseudogene 28","termid":"PBO:0071730"}


id: PBO:0038595
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"acyl-CoA dehydrogenase medium chain","termid":"PBO:0038595"}


id: GO:1905639
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of mitochondrial mRNA catabolic process.","definition_xrefs":["GO_REF:0000058","GOC:TermGenie","PMID:27122350"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of mitochondrial RNA catabolic process","termid":"GO:0000962"},{"relation_name":"is_a","term_name":"positive regulation of mRNA catabolic process","termid":"GO:0061014"},{"relation_name":"is_a","term_name":"regulation of mitochondrial mRNA catabolic process","termid":"GO:1905637"},{"relation_name":"positively_regulates","term_name":"mitochondrial mRNA catabolic process","termid":"GO:0000958"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0010467"},{"rel_name":"positively_regulates","termid":"GO:0016071"},{"rel_name":"regulates","termid":"GO:0044248"},{"rel_name":"positively_regulates","termid":"GO:0044248"},{"rel_name":"regulates","termid":"GO:0016071"}],"interesting_parent_ids":["GO:0010467","GO:0008150","GO:0044248","GO:0016071"],"is_obsolete":false,"name":"positive regulation of mitochondrial mRNA catabolic process","synonyms":[{"name":"activation of mitochondrial mRNA catabolic process","type":"narrow"},{"name":"up regulation of mitochondrial mRNA catabolic process","type":"exact"},{"name":"up-regulation of mitochondrial mRNA catabolic process","type":"exact"},{"name":"upregulation of mitochondrial mRNA catabolic process","type":"exact"}],"termid":"GO:1905639"}


id: PBO:0078153
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"T cell receptor alpha variable 31 (pseudogene)","termid":"PBO:0078153"}


id: PR:O94532
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein diaphanous homolog 1 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO04539","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"formin-3 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC895.05","secondary_identifiers":["UniProtKB:O94532"],"synonyms":[{"name":"Spom972h-DIAPH1","type":"exact"}],"termid":"PR:O94532"}


id: SO:0002180
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A gene that encodes an enzymatic RNA.","direct_ancestors":[{"relation_name":"is_a","term_name":"ncRNA_gene","termid":"SO:0001263"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"enzymatic_RNA_gene","synonyms":[{"name":"enzymatic RNA gene","type":"exact"}],"termid":"SO:0002180"}


id: PBO:0002221
data:
  {"annotation_feature_type":"gene","cv_name":"disease_associated","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Leigh syndrome","termid":"PBO:0002221"}


id: GO:0075211
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process in which the symbiont organism modulates the frequency, rate or extent of its transmembrane receptor-mediated cAMP signal transduction as a result of detecting molecules of its host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction.","definition_xrefs":["GOC:pamgo_curators"],"gene_count":0,"genotype_count":0,"name":"obsolete regulation of transmembrane receptor-mediated cAMP signaling in response to host (obsolete GO:0075211)","synonyms":[{"name":"regulation of symbiont transmembrane receptor-mediated cAMP signal transduction in response to host","type":"exact"},{"name":"regulation of transmembrane receptor-mediated cAMP signal transduction in response to host","type":"exact"},{"name":"regulation of transmembrane receptor-mediated cAMP signalling in response to host","type":"exact"}],"termid":"GO:0075211"}


id: PBO:0060086
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MT-ND5 pseudogene 33","termid":"PBO:0060086"}


id: PBO:0085888
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein of unknown function; involved in negative regulation of expression of spliceosome components PRP4 and PRP3; relocalizes to the cytosol in response to hypoxia","termid":"PBO:0085888"}


id: PR:Q9UT56
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- rps2601 gene.","definition_xrefs":["UniProtKB:Q9UT56","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"40S ribosomal protein S26-A (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC806.03c","synonyms":[{"name":"Spom972h-rps2601","type":"exact"}],"termid":"PR:Q9UT56"}


id: PBO:0043737
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cytochrome c oxidase subunit 6C pseudogene 16","termid":"PBO:0043737"}


id: PBO:0000060
data:
  {"annotation_feature_type":"gene","cv_name":"warning","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"appears to be truncated","termid":"PBO:0000060"}


id: PBO:0058089
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 4306","termid":"PBO:0058089"}


id: GO:1904869
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of protein localization to Cajal body.","definition_xrefs":["GO_REF:0000058","GOC:BHF_telomere","GOC:nc","GOC:TermGenie","GOC:BHF","PMID:25467444"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of protein localization to nucleus","termid":"GO:1900180"},{"relation_name":"regulates","term_name":"protein localization to Cajal body","termid":"GO:1904867"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of protein localization to Cajal body","synonyms":[{"name":"regulation of protein localisation in Cajal body","type":"exact"},{"name":"regulation of protein localisation to Cajal body","type":"exact"},{"name":"regulation of protein localization in Cajal body","type":"exact"}],"termid":"GO:1904869"}


id: PBO:0031319
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-sensitive_to_rapamycin","termid":"PBO:0031319"}


id: PATO:0001691
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A contractility quality inhering in a bearer by virtue of the bearer's inability of contracting or being contracted.","definition_xrefs":["PATOC:GVG"],"direct_ancestors":[{"relation_name":"is_a","term_name":"contractility","termid":"PATO:0001579"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"non-contractile","termid":"PATO:0001691"}


id: GO:0035072
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process induced by ecdysone that directly activates salivary gland programmed cell death during salivary gland histolysis.","definition_xrefs":["GOC:bf"],"gene_count":0,"genotype_count":0,"name":"obsolete ecdysone-mediated induction of salivary gland cell autophagic cell death (obsolete GO:0035072)","termid":"GO:0035072"}


id: PBO:0047542
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"fibroblast growth factor 7 pseudogene 1","termid":"PBO:0047542"}


id: GO:0033966
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: N-benzylformamide + H2O = formate + benzylamine.","definition_xrefs":["EC:3.5.1.91"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides","termid":"GO:0016811"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016810"},{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016810","GO:0016787"],"is_obsolete":false,"name":"N-substituted formamide deformylase activity","secondary_identifiers":["MetaCyc:3.5.1.91-RXN","RHEA:12096"],"synonyms":[{"name":"N-benzylformamide amidohydrolase activity","type":"related"},{"name":"NfdA","type":"related"}],"termid":"GO:0033966"}


id: PR:P36617
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A DNA repair endonuclease XPF that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO04346","PRO:DNx","PANTHER:PTHR10150:SF0"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DNA repair protein rad16 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC970.01","secondary_identifiers":["UniProtKB:P36617"],"synonyms":[{"name":"Spom972h-ERCC4","type":"exact"}],"termid":"PR:P36617"}


id: GO:0060070
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A type of Wnt signaling pathway in which Wnt binding to its receptor on the surface of a target cell results in the by propagation of the molecular signals via beta-catenin, and end with a change in transcription of target genes. In this pathway, the activated receptor signals via downstream effectors that result in the inhibition of beta-catenin phosphorylation, thereby preventing degradation of beta-catenin. Stabilized beta-catenin can then accumulate and travel to the nucleus to trigger changes in transcription of target genes.","definition_xrefs":["PMID:19619488","PMID:11532397"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Wnt signaling pathway","termid":"GO:0016055"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"canonical Wnt signaling pathway","synonyms":[{"name":"Wnt receptor signaling pathway through beta-catenin","type":"exact"},{"name":"Wnt receptor signaling pathway via beta-catenin","type":"exact"},{"name":"Wnt receptor signalling pathway through beta-catenin","type":"exact"},{"name":"canonical Wnt receptor signaling pathway","type":"exact"},{"name":"canonical Wnt-activated signaling pathway","type":"exact"},{"name":"frizzled-1 receptor signaling pathway","type":"narrow"}],"termid":"GO:0060070"}


id: GO:0052557
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process by which an organism activates, maintains or increases the frequency, rate or extent of the immune response of the symbiont organism; the immune response is any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction.","definition_xrefs":["GOC:mtg_pamgo"],"gene_count":0,"genotype_count":0,"name":"obsolete positive regulation by organism of symbiont immune response (obsolete GO:0052557)","synonyms":[{"name":"positive regulation by organism of symbiont immune response","type":"exact"}],"termid":"GO:0052557"}


id: PR:P87304
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"An acyl-coenzyme A thioesterase 13 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO03842","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"esterase C31F10.02 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC31F10.02","secondary_identifiers":["UniProtKB:P87304"],"synonyms":[{"name":"Spom972h-ACOT13","type":"exact"}],"termid":"PR:P87304"}


id: PBO:0003093
data:
  {"annotation_feature_type":"gene","cv_name":"disease_associated","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"6-phosphogluconate dehydrogenase deficiency","termid":"PBO:0003093"}


id: PATO:0002040
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A shape quality inhering in a bearer by virtue of the bearer's being convex on both sides or surface.","definition_xrefs":["thefreedictionary:http://www.thefreedictionary.com/biconvexity"],"direct_ancestors":[{"relation_name":"is_a","term_name":"convex","termid":"PATO:0001355"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"biconvex","secondary_identifiers":["Image:http\\://www.thefreedictionary.com/_/viewer.aspx?path=hm&name=A4bicovx"],"termid":"PATO:0002040"}


id: PR:P54789
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"An origin recognition complex subunit 1 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"origin recognition complex subunit 1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC29A10.15","secondary_identifiers":["UniProtKB:P54789"],"synonyms":[{"name":"SPBC29A10.15","type":"related"},{"name":"Spom972h-ORC1","type":"exact"},{"name":"orp1","type":"related"}],"termid":"PR:P54789"}


id: GO:0036465
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The trafficking of synaptic vesicles from the pre-synaptic membrane so the vesicle can dock and prime for another round of exocytosis and neurotransmitter release. Recycling occurs after synaptic vesicle exocytosis, and is necessary to replenish presynaptic vesicle pools, sustain transmitter release and preserve the structural integrity of the presynaptic membrane. Recycling can occur following transient fusion with the presynaptic membrane (kiss and run), or via endocytosis of presynaptic membrane.","definition_xrefs":["PMID:22026965","GOC:bf","PMID:23245563","PMID:15217342","GOC:pad","GOC:PARL"],"direct_ancestors":[{"relation_name":"is_a","term_name":"transport","termid":"GO:0006810"},{"relation_name":"is_a","term_name":"establishment of localization in cell","termid":"GO:0051649"},{"relation_name":"part_of","term_name":"synaptic vesicle cycle","termid":"GO:0099504"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0016192"},{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0006810","GO:0016192","GO:0051179","GO:0008150"],"is_obsolete":false,"name":"synaptic vesicle recycling","synonyms":[{"name":"kiss-and-run synaptic vesicle recycling","type":"narrow"},{"name":"kiss-and-stay synaptic vesicle recycling","type":"narrow"}],"termid":"GO:0036465"}


id: PBO:0090542
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"phosphatidylinositol-4 kinase plasma membrane scaffold Efr3-like","termid":"PBO:0090542"}


id: GO:0000831
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: ATP + 1D-myo-inositol hexakisphosphate = ADP + 6-diphospho-1D-myo-inositol (1,2,3,4,5)pentakisphosphate.","definition_xrefs":["GOC:elh","PMID:16429326"],"direct_ancestors":[{"relation_name":"is_a","term_name":"inositol hexakisphosphate kinase activity","termid":"GO:0000828"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016301"},{"rel_name":"is_a","termid":"GO:0016740"}],"interesting_parent_ids":["GO:0016740","GO:0003824","GO:0003674","GO:0016301"],"is_obsolete":false,"name":"inositol hexakisphosphate 6-kinase activity","termid":"GO:0000831"}


id: GO:0006168
data:
  {"annotated_genes":["SJAG_01859"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[89164],"is_not":false,"summary":null,"term":"GO:0006168"}]},"cv_name":"biological_process","definition":"Any process that generates adenine, 6-aminopurine, from derivatives of it without de novo synthesis.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"purine nucleobase salvage","termid":"GO:0043096"},{"relation_name":"is_a","term_name":"adenine biosynthetic process","termid":"GO:0046084"}],"gene_count":1,"genes_by_uniquename":{"SJAG_01859":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0055086"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0055086","GO:0008150","GO:0044281"],"is_obsolete":false,"name":"adenine salvage","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"adenine salvage pathway","type":"exact"},{"name":"adenine, hypoxanthine and their nucleoside salvage","type":"broad"}],"termid":"GO:0006168","terms_by_termid":{"GO:0006168":null}}


id: PBO:0047464
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"FCRL4 pseudogene 1","termid":"PBO:0047464"}


id: FYPO:0000183
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A transport phenotype observed in the vegetative growth phase of the life cycle in which the export of polyadenylated mRNA from the nucleus is abnormal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal mRNA export from nucleus","termid":"FYPO:0000204"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0006551"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0006551","FYPO:0001985","FYPO:0000138","FYPO:0001320","FYPO:0005447"],"is_obsolete":false,"name":"abnormal poly(A)+ mRNA export from nucleus","synonyms":[{"name":"abnormal poly(A)+ mRNA export from nucleus during mitotic cell cycle","type":"related"},{"name":"abnormal poly(A)+ mRNA export from nucleus during vegetative growth","type":"exact"},{"name":"abnormal polyadenylated mRNA export from nucleus","type":"exact"}],"termid":"FYPO:0000183"}


id: GO:0021694
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process that gives rise to the cerebellar Purkinje cell layer. This process pertains to the initial formation of a structure from unspecified parts. The Purkinje cell layer lies just underneath the molecular layer of the cerebellar cortex. It contains the neuronal cell bodies of the Purkinje cells that are arranged side by side in a single layer. Candelabrum interneurons are vertically oriented between the Purkinje cells. Purkinje neurons are inhibitory and provide the output of the cerebellar cortex through axons that project into the white matter. Extensive dendritic trees from the Purkinje cells extend upward in a single plane into the molecular layer where they synapse with parallel fibers of granule cells.","definition_xrefs":["GOC:dph","GO_REF:0000021","GOC:dgh","GOC:jid","ISBN:0838580343","GOC:cls"],"direct_ancestors":[{"relation_name":"is_a","term_name":"anatomical structure formation involved in morphogenesis","termid":"GO:0048646"},{"relation_name":"part_of","term_name":"cerebellar Purkinje cell layer morphogenesis","termid":"GO:0021692"},{"relation_name":"part_of","term_name":"cerebellar cortex formation","termid":"GO:0021697"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cerebellar Purkinje cell layer formation","termid":"GO:0021694"}


id: PBO:0043815
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"copine 6","termid":"PBO:0043815"}


id: PBO:0054553
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1954","termid":"PBO:0054553"}


id: PBO:0044880
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DENND6A antisense RNA 1","termid":"PBO:0044880"}


id: GO:0070068
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A SNARE complex that contains VAMP4, syntaxin 6, syntaxin 16, and Vti1a (or orthologs thereof).","definition_xrefs":["PMID:11839770"],"direct_ancestors":[{"relation_name":"is_a","term_name":"SNARE complex","termid":"GO:0031201"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005737"}],"interesting_parent_ids":["GO:0005575","GO:0005737","GO:0032991"],"is_obsolete":false,"name":"VAMP4-syntaxin-6-syntaxin-16-Vti1a complex","synonyms":[{"name":"SNARE complex (Vamp4, Stx6, Stx16, Vti1a)","type":"narrow"},{"name":"Vamp4-Stx6-Stx16-Vti1a complex","type":"related"}],"termid":"GO:0070068"}


id: PBO:0003417
data:
  {"annotation_feature_type":"gene","cv_name":"name_description","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Mi2-like protein Interacting with clr Three","termid":"PBO:0003417"}


id: FYPO:0003462
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of trehalose measured in a cell is normal (i.e. indistinguishable from wild type) when the cell is subject to oxidative stress.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal cellular trehalose level","termid":"FYPO:0001449"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0001312"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0000257","FYPO:0001312","FYPO:0001320","FYPO:0000002"],"is_obsolete":false,"name":"normal cellular trehalose level during cellular response to oxidative stress","synonyms":[{"name":"normal cellular trehalose accumulation during cellular response to oxidative stress","type":"related"},{"name":"normal cellular trehalose level during cellular response to oxidative stress during mitotic cell cycle","type":"related"},{"name":"normal cellular trehalose level during cellular response to oxidative stress during vegetative growth","type":"exact"},{"name":"normal cellular trehalose level during oxidative stress response","type":"exact"}],"termid":"FYPO:0003462"}


id: GO:0106174
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The volume enclosed by the membrane of a phagolysosome.","definition_xrefs":["PMID:29471269","GOC:pde"],"direct_ancestors":[{"relation_name":"is_a","term_name":"vacuolar lumen","termid":"GO:0005775"},{"relation_name":"is_a","term_name":"cytoplasmic vesicle lumen","termid":"GO:0060205"},{"relation_name":"is_a","term_name":"phagocytic vesicle lumen","termid":"GO:0097013"},{"relation_name":"part_of","term_name":"phagolysosome","termid":"GO:0032010"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005773"},{"rel_name":"part_of","termid":"GO:0031410"},{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575","GO:0005773","GO:0031410","GO:0005737"],"is_obsolete":false,"name":"phagolysosome vesicle lumen","termid":"GO:0106174"}


id: PBO:0057596
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 933","termid":"PBO:0057596"}


id: PBO:0005537
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"single-stranded DNA binding protein Ssb2","termid":"PBO:0005537"}


id: GO:0098957
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The directed movement of mitochondria along microtubules in axons away from the cell body and towards the presynapse.","definition_xrefs":["GOC:dos"],"direct_ancestors":[{"relation_name":"is_a","term_name":"anterograde axonal transport","termid":"GO:0008089"},{"relation_name":"is_a","term_name":"axonal transport of mitochondrion","termid":"GO:0019896"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0051179"}],"interesting_parent_ids":["GO:0051179","GO:0006810","GO:0008150"],"is_obsolete":false,"name":"anterograde axonal transport of mitochondrion","synonyms":[{"name":"anterograde axon transport of mitochondria","type":"exact"}],"termid":"GO:0098957"}


id: GO:1900698
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of o-orsellinic acid biosynthetic process.","definition_xrefs":["GOC:di","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of cellular ketone metabolic process","termid":"GO:0010565"},{"relation_name":"is_a","term_name":"regulation of cellular biosynthetic process","termid":"GO:0031326"},{"relation_name":"is_a","term_name":"regulation of secondary metabolite biosynthetic process","termid":"GO:1900376"},{"relation_name":"regulates","term_name":"o-orsellinic acid biosynthetic process","termid":"GO:1900584"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0044281"},{"rel_name":"regulates","termid":"GO:0019748"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0019748","GO:0044281","GO:0008150"],"is_obsolete":false,"name":"regulation of o-orsellinic acid biosynthetic process","synonyms":[{"name":"regulation of o-orsellinic acid anabolism","type":"exact"},{"name":"regulation of o-orsellinic acid biosynthesis","type":"exact"},{"name":"regulation of o-orsellinic acid formation","type":"exact"},{"name":"regulation of o-orsellinic acid synthesis","type":"exact"}],"termid":"GO:1900698"}


id: GO:0033598
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The multiplication or reproduction of mammary gland epithelial cells, resulting in the expansion of a cell population. Mammary gland epithelial cells make up the covering of surfaces of the mammary gland. The mammary gland is a large compound sebaceous gland that in female mammals is modified to secrete milk.","definition_xrefs":["GOC:dph","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"epithelial cell proliferation","termid":"GO:0050673"},{"relation_name":"part_of","term_name":"mammary gland epithelium development","termid":"GO:0061180"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"mammary gland epithelial cell proliferation","termid":"GO:0033598"}


id: GO:0060257
data:
  {"annotated_genes":["SJAG_00926","SJAG_03473"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[99388,102129],"is_not":false,"summary":null,"term":"GO:0060257"}]},"cv_name":"biological_process","definition":"Any process that decreases the rate, frequency or extent of the non-sexual aggregation of single-celled organisms.","definition_xrefs":["GOC:tb","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of cell-cell adhesion","termid":"GO:0022408"},{"relation_name":"is_a","term_name":"regulation of flocculation","termid":"GO:0060256"},{"relation_name":"negatively_regulates","term_name":"flocculation","termid":"GO:0000128"}],"gene_count":2,"genes_by_uniquename":{"SJAG_00926":null,"SJAG_03473":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"negatively_regulates","termid":"GO:0007155"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0007155"}],"interesting_parent_ids":["GO:0007155","GO:0008150"],"is_obsolete":false,"name":"negative regulation of flocculation","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["GO:1901134"],"synonyms":[{"name":"negative regulation of coflocculation","type":"narrow"}],"termid":"GO:0060257","terms_by_termid":{"GO:0060257":null}}


id: PBO:0081020
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger C2HC-type containing 1B","termid":"PBO:0081020"}


id: PBO:0069312
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 570, pseudogene","termid":"PBO:0069312"}


id: PATO:0000044
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A physical quality which inheres in a bearer by virtue of the number of the bearer's repetitive actions in a particular time.","definition_xrefs":["Wikipedia:http://en.wikipedia.org/wiki/frequency"],"direct_ancestors":[{"relation_name":"is_a","term_name":"rate","termid":"PATO:0000161"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"frequency","termid":"PATO:0000044"}


id: PBO:0053729
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 943","termid":"PBO:0053729"}


id: PBO:0056713
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MEMO1 pseudogene 5","termid":"PBO:0056713"}


id: GO:0019460
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of glutamine into other compounds, including fumarate.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"fumarate metabolic process","termid":"GO:0006106"},{"relation_name":"is_a","term_name":"glutamate catabolic process","termid":"GO:0006538"},{"relation_name":"is_a","term_name":"glutamine catabolic process","termid":"GO:0006543"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044248"},{"rel_name":"is_a","termid":"GO:0006520"}],"interesting_parent_ids":["GO:0044281","GO:0006520","GO:0008150","GO:0044248"],"is_obsolete":false,"name":"glutamine catabolic process to fumarate","synonyms":[{"name":"glutamate catabolic process to fumarate","type":"narrow"},{"name":"glutamine breakdown to fumarate","type":"exact"},{"name":"glutamine degradation to fumarate","type":"exact"}],"termid":"GO:0019460"}


id: GO:0052230
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process in which an organism modulates the frequency, rate or extent of the directed movement of substances within the cell or cells of a second organism, where the two organisms are in a symbiotic interaction.","definition_xrefs":["GOC:mtg_pamgo_17jul06"],"gene_count":0,"genotype_count":0,"name":"obsolete modulation of intracellular transport in other organism involved in symbiotic interaction (obsolete GO:0052230)","synonyms":[{"name":"modulation of intracellular trafficking in other organism","type":"exact"},{"name":"modulation of intracellular transport in other organism during symbiotic interaction","type":"related"}],"termid":"GO:0052230"}


id: PBO:0055486
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2919","termid":"PBO:0055486"}


id: PBO:0052478
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"kelch domain containing 4","termid":"PBO:0052478"}


id: GO:0072224
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The progression of the metanephric glomerulus over time from its initial formation until its mature state. The metanephric glomerulus is a capillary tuft which forms a close network with the visceral epithelium (podocytes) and the mesangium to form the filtration barrier and is surrounded by Bowman's capsule in nephrons of the mature vertebrate kidney, or metanephros.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"glomerulus development","termid":"GO:0032835"},{"relation_name":"part_of","term_name":"metanephric nephron development","termid":"GO:0072210"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"metanephric glomerulus development","synonyms":[{"name":"metanephric glomerular development","type":"exact"}],"termid":"GO:0072224"}


id: PBO:0085347
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Phospholipase B (lysophospholipase) involved in lipid metabolism; required for efficient acyl chain remodeling of newly synthesized phosphatidylethanolamine-derived phosphatidylcholine; required for deacylation of phosphatidylcholine and phosphatidylethanolamine but not phosphatidylinositol; PLB1 has a paralog, PLB3, that arose from the whole genome duplication","termid":"PBO:0085347"}


id: GO:0003350
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The progression of the pulmonary myocardium over time, from its initial formation to the mature structure. The pulmonary myocardium is the myocardial tissue present in the pulmonary vein.","definition_xrefs":["GOC:dph","PMID:17638577"],"direct_ancestors":[{"relation_name":"is_a","term_name":"striated muscle tissue development","termid":"GO:0014706"},{"relation_name":"part_of","term_name":"venous blood vessel development","termid":"GO:0060841"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"pulmonary myocardium development","termid":"GO:0003350"}


id: PBO:0083407
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Dubious open reading frame; unlikely to encode a functional protein, based on available experimental and comparative sequence data; partially overlaps the dubious ORF YLR122C; contains characteristic aminoacyl-tRNA motif","termid":"PBO:0083407"}


id: PBO:0042450
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CDC42 pseudogene 3","termid":"PBO:0042450"}


id: SO:0002176
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A substitution that is the result of base-calling or assembly error.","direct_ancestors":[{"relation_name":"is_a","term_name":"sequence_alteration_artifact","termid":"SO:0002172"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"substitution_artifact","synonyms":[{"name":"substitution artifact","type":"exact"}],"termid":"SO:0002176"}


id: PBO:0050186
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"high mobility group nucleosome binding domain 1 pseudogene 3","termid":"PBO:0050186"}


id: PBO:0002625
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA polymerase III transcription factor TFIIIA","termid":"PBO:0002625"}


id: MOD:00755
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively substitutes an iodine atom of a residue for a hydrogen atom.","definition_xrefs":["PubMed:18688235"],"direct_ancestors":[{"relation_name":"is_a","term_name":"halogen containing residue","termid":"MOD:00694"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"iodinated residue","synonyms":[{"name":"IRes","type":"exact"}],"termid":"MOD:00755"}


id: PBO:0058823
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 8053","termid":"PBO:0058823"}


id: PBO:0075046
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nucleolar RNA, C/D box 116-9","termid":"PBO:0075046"}


id: SO:1001284
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A set of units of gene expression directly regulated by a common set of one or more common regulatory gene products.","definition_xrefs":["PMID:32665585","ISBN:0198506732"],"direct_ancestors":[{"relation_name":"has_part","term_name":"unit_of_gene_expression","termid":"SO:0002300"},{"relation_name":"is_a","term_name":"gene_group","termid":"SO:0005855"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"regulon","secondary_identifiers":["http://en.wikipedia.org/wiki/Regulon"],"termid":"SO:1001284"}


id: PBO:0012241
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial pyrimidine nucleotide transporter (predicted)","termid":"PBO:0012241"}


id: GO:0070116
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A thylakoid located in an organellar chromatophore.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"thylakoid","termid":"GO:0009579"},{"relation_name":"part_of","term_name":"organellar chromatophore","termid":"GO:0070111"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0031410"}],"interesting_parent_ids":["GO:0005737","GO:0031410","GO:0005575"],"is_obsolete":false,"name":"organellar chromatophore thylakoid","synonyms":[{"name":"Paulinella-type chromatophore thylakoid","type":"exact"}],"termid":"GO:0070116"}


id: GO:0044554
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency or rate of heart contraction of another organism.","definition_xrefs":["PMID:20923766","GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of heart rate","termid":"GO:0002027"},{"relation_name":"is_a","term_name":"modulation of biological quality in another organism","termid":"GO:0044553"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"modulation of heart rate in another organism","synonyms":[{"name":"modulation of heart rate in other organism","type":"exact"},{"name":"regulation of heart rate in other organism","type":"exact"}],"termid":"GO:0044554"}


id: PBO:0068232
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 18S ribosomal 3","termid":"PBO:0068232"}


id: GO:0004856
data:
  {"annotated_genes":["SJAG_04276"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[115115],"is_not":false,"summary":null,"term":"GO:0004856"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: D-xylulose + ATP = D-xylulose 5-phosphate + ADP + 2 H+.","definition_xrefs":["RHEA:10964","EC:2.7.1.17"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phosphotransferase activity, alcohol group as acceptor","termid":"GO:0016773"},{"relation_name":"is_a","term_name":"carbohydrate kinase activity","termid":"GO:0019200"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04276":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0016301"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016740","GO:0003824","GO:0016301","GO:0003674"],"is_obsolete":false,"name":"D-xylulokinase activity","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["MetaCyc:XYLULOKIN-RXN","KEGG_REACTION:R01639","Reactome:R-HSA-5662466"],"synonyms":[{"name":"ATP:D-xylulose 5-phosphotransferase activity","type":"related"},{"name":"xylulokinase (phosphorylating)","type":"related"},{"name":"xylulokinase activity","type":"broad"},{"name":"xylulose kinase activity","type":"related"}],"termid":"GO:0004856","terms_by_termid":{"GO:0004856":null}}


id: GO:0071220
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id: PBO:0058275
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  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 4652","termid":"PBO:0058275"}


id: FYPO:0001861
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype in which minichromosomes are lost due to abnormal mitotic sister chromatid segregation at a higher frequency than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased minichromosome loss during vegetative growth","termid":"FYPO:0001840"},{"relation_name":"output_of","term_name":"abnormal mitotic sister chromatid segregation","termid":"FYPO:0000141"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"output_of","termid":"FYPO:0000337"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0000641"},{"rel_name":"output_of","termid":"FYPO:0000631"}],"interesting_parent_ids":["FYPO:0000631","FYPO:0000337","FYPO:0001320","FYPO:0000641","FYPO:0005447","FYPO:0001985","FYPO:0000002"],"is_obsolete":false,"name":"increased minichromosome loss upon segregation during vegetative growth","synonyms":[{"name":"increased plasmid loss upon segregation during mitotic cell cycle","type":"exact"},{"name":"mitotic minichromosome maintenance defect","type":"related"}],"termid":"FYPO:0001861"}


id: GO:0034274
data:
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id: PBO:0001698
data:
  {"annotation_feature_type":"gene","cv_name":"EC numbers","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"3.6.3.8","termid":"PBO:0001698"}


id: GO:0007074
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that increases the frequency, rate or extent of transcription from an RNA polymerase II promoter as the cell leaves M phase. M phase is the part of the mitotic cell cycle during which mitosis and cytokinesis take place.","definition_xrefs":["GOC:dph","GOC:tb"],"gene_count":0,"genotype_count":0,"name":"obsolete positive regulation of transcription involved in exit from mitosis, from RNA polymerase II promoter (obsolete GO:0007074)","synonyms":[{"name":"activation of transcription on exit from mitosis, from Pol II promoter","type":"narrow"},{"name":"activation of transcription on exit from mitosis, from RNA polymerase II promoter","type":"narrow"}],"termid":"GO:0007074"}


id: GO:0039606
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process in which a symbiont inhibits or disrupts translation initiation in its host. The host is defined as the larger of the organisms involved in a symbiotic interaction.","definition_xrefs":["GOC:bf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"symbiont-mediated suppression of host translation","termid":"GO:0039604"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"symbiont-mediated suppression of host translation initiation","synonyms":[{"name":"suppression by virus of host translation initiation","type":"narrow"}],"termid":"GO:0039606"}


id: PATO:0001516
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"An optical quality where light rays originating from a point on the object converge.","definition_xrefs":["Wikipedia:http://en.wikipedia.org/wiki/Focus_(optics)"],"direct_ancestors":[{"relation_name":"is_a","term_name":"optical quality","termid":"PATO:0001300"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"focus","termid":"PATO:0001516"}


id: PR:Q9USX3
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- rad60 gene.","definition_xrefs":["UniProtKB:Q9USX3","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DNA repair protein rad60 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC1921.02","synonyms":[{"name":"Spom972h-rad60","type":"exact"}],"termid":"PR:Q9USX3"}


id: PBO:0045324
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dedicator of cytokinesis 4","termid":"PBO:0045324"}


id: MOD:00450
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"OBSOLETE because this isotopic label from Unimod entry 57 is deprecated","definition_xrefs":["PubMed:11857757"],"gene_count":0,"genotype_count":0,"name":"OBSOLETE MOD:00450 acetate labeling reagent light form (K) (obsolete MOD:00450)","termid":"MOD:00450"}


id: GO:0031324
data:
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id: GO:1902875
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id: PBO:0066945
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id: PBO:0071649
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id: PBO:0063222
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id: GO:0061837
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id: GO:0009239
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id: PR:Q9HDU2
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  {"annotation_feature_type":"gene","cv_name":"protein","definition":"An N-acetylgalactosamine kinase that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PANTHER:PTHR10457:SF7","OMA:SCHPO04144","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"galactokinase (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBPB2B2.13","secondary_identifiers":["UniProtKB:Q9HDU2"],"synonyms":[{"name":"Spom972h-GALK2","type":"exact"},{"name":"galactose kinase (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:Q9HDU2"}


id: GO:0031400
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id: PBO:0053712
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  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 921","termid":"PBO:0053712"}


id: PBO:0087868
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  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Transcriptional activator that enhances pseudohyphal growth; physically interacts with the Tup1-Cyc8 complex and recruits Tup1p to its targets; regulates expression of FLO11, an adhesin required for pseudohyphal filament formation; similar to StuA, an A. nidulans developmental regulator; potential Cdc28p substrate; PHD1 has a paralog, SOK2, that arose from the whole genome duplication","termid":"PBO:0087868"}


id: PBO:0060239
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"myosin binding protein C2","termid":"PBO:0060239"}


id: PBO:0074314
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  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SMAD family member 4","termid":"PBO:0074314"}


id: FYPO:0006747
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id: PBO:0053262
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id: PBO:0078895
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id: PBO:0000001
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id: GO:0044018
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id: GO:1903097
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that modulates the rate, frequency or extent of the formation of nucleosomes containing the histone H3 variant CENP-A to form centromeric chromatin. This specialised chromatin occurs at centromeric region in point centromeres, and the central core in modular centromeres.","definition_xrefs":["GO_REF:0000058","PMID:24710126","GOC:TermGenie"],"gene_count":0,"genotype_count":0,"name":"obsolete regulation of CENP-A containing nucleosome assembly (obsolete GO:1903097)","synonyms":[{"name":"regulation of CENP-A deposition","type":"related"},{"name":"regulation of CENP-A loading","type":"related"},{"name":"regulation of CenH3-containing nucleosome assembly at centromere","type":"related"},{"name":"regulation of DNA replication-independent nucleosome assembly at centromere","type":"exact"},{"name":"regulation of centromere specific nucleosome exchange","type":"related"},{"name":"regulation of centromere-specific histone exchange","type":"exact"},{"name":"regulation of centromere-specific nucleosome assembly","type":"exact"},{"name":"regulation of centromeric DNA replication-independent nucleosome assembly","type":"exact"}],"termid":"GO:1903097"}


id: PBO:0027582
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abolished_protein_localization_to_vacuole_during_nitrogen_starvation","termid":"PBO:0027582"}


id: GO:1902751
data:
  {"annotated_genes":["SJAG_01805","SJAG_03067","SJAG_00117","SJAG_02342","SJAG_01901","SJAG_01000","SJAG_03592","SJAG_01837","SJAG_04140","SJAG_02592","SJAG_03309","SJAG_04486","SJAG_04332","SJAG_01456","SJAG_00256","SJAG_00216","SJAG_00214","SJAG_04597","SJAG_00883","SJAG_03602","SJAG_03486"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[83516,90046,103128,92010,94169,97549,99320,90007,104494,94745,112766,89435,112574,87683,83525,90189,107157,106284,87266],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0010971"},{"annotations":[83318,97170],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1905287"},{"annotations":[90190],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0110032"}]},"cv_name":"biological_process","definition":"Any signaling pathway that activates or increases the activity of a cell cycle cyclin-dependent protein kinase to modulate the switch from G2 phase to M phase of the cell cycle.","definition_xrefs":["GO_REF:0000058","GOC:jl","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of cell cycle phase transition","termid":"GO:1901989"},{"relation_name":"is_a","term_name":"regulation of cell cycle G2/M phase transition","termid":"GO:1902749"},{"relation_name":"positively_regulates","term_name":"cell cycle G2/M phase transition","termid":"GO:0044839"}],"gene_count":21,"genes_by_uniquename":{"SJAG_00117":null,"SJAG_00214":null,"SJAG_00216":null,"SJAG_00256":null,"SJAG_00883":null,"SJAG_01000":null,"SJAG_01456":null,"SJAG_01805":null,"SJAG_01837":null,"SJAG_01901":null,"SJAG_02342":null,"SJAG_02592":null,"SJAG_03067":null,"SJAG_03309":null,"SJAG_03486":null,"SJAG_03592":null,"SJAG_03602":null,"SJAG_04140":null,"SJAG_04332":null,"SJAG_04486":null,"SJAG_04597":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0007049"},{"rel_name":"positively_regulates","termid":"GO:0007049"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0007049","GO:0008150"],"is_obsolete":false,"name":"positive regulation of cell cycle G2/M phase transition","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"activation of cell cycle G2/M phase transition","type":"narrow"},{"name":"up regulation of cell cycle G2/M phase transition","type":"exact"},{"name":"up-regulation of cell cycle G2/M phase transition","type":"exact"},{"name":"upregulation of cell cycle G2/M phase transition","type":"exact"}],"termid":"GO:1902751","terms_by_termid":{"GO:0010971":null,"GO:0110032":null,"GO:1905287":null}}


id: PR:000028949
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A thioredoxin oxidized form in Schizosaccharomyces pombe. The disulfide bond involves Cys-30 and Cys-33 in UniProtKB:O14463.","definition_xrefs":["PMID:22245228","PRO:CNA"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein","termid":"PR:000000001"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"trx1/Ox+","pombase_gene_id":"SPAC7D4.07c","synonyms":[{"name":"Spom-TXN/Ox+","type":"exact"},{"name":"trx1/Ox+","type":"exact"}],"termid":"PR:000028949"}


id: GO:1990295
data:
  {"annotated_genes":["SJAG_01297","SJAG_02045","SJAG_00930","SJAG_02695","SJAG_03073","SJAG_02336"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[97212,99375,99732,104171],"is_not":false,"summary":null,"term":"GO:1990295"},{"annotations":[97211,92673],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:1905759"},{"annotations":[86915],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:1905760"}]},"cv_name":"cellular_component","definition":"A cytoskeletal part that consists of an array of microtubules and associated molecules that forms at the end of anaphase, and in which microtubules are nucleated from an equatorial microtubule organizing center.","definition_xrefs":["PMID:11792817","PMID:17072892","PMID:9601091"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular anatomical entity","termid":"GO:0110165"},{"relation_name":"part_of","term_name":"microtubule cytoskeleton","termid":"GO:0015630"}],"gene_count":6,"genes_by_uniquename":{"SJAG_00930":null,"SJAG_01297":null,"SJAG_02045":null,"SJAG_02336":null,"SJAG_02695":null,"SJAG_03073":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0015630"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0015630","GO:0005575"],"is_obsolete":false,"name":"post-anaphase microtubule array","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"PAA","type":"exact"},{"name":"post-anaphase array","type":"exact"}],"termid":"GO:1990295","terms_by_termid":{"GO:1905759":null,"GO:1905760":null,"GO:1990295":null}}


id: PBO:0041128
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"BTB domain containing 9","termid":"PBO:0041128"}


id: PATO:0000837
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0000837 auditory threshold value (obsolete PATO:0000837)","termid":"PATO:0000837"}


id: GO:1904018
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of vasculature development.","definition_xrefs":["GO_REF:0000058","PMID:21472453","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of developmental process","termid":"GO:0051094"},{"relation_name":"is_a","term_name":"positive regulation of multicellular organismal process","termid":"GO:0051240"},{"relation_name":"is_a","term_name":"regulation of vasculature development","termid":"GO:1901342"},{"relation_name":"positively_regulates","term_name":"vasculature development","termid":"GO:0001944"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of vasculature development","synonyms":[{"name":"activation of vascular system development","type":"related"},{"name":"activation of vasculature development","type":"narrow"},{"name":"positive regulation of vascular system development","type":"related"},{"name":"up regulation of vascular system development","type":"related"},{"name":"up regulation of vasculature development","type":"exact"},{"name":"up-regulation of vascular system development","type":"related"},{"name":"up-regulation of vasculature development","type":"exact"},{"name":"upregulation of vascular system development","type":"related"},{"name":"upregulation of vasculature development","type":"exact"}],"termid":"GO:1904018"}


id: GO:0035228
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops or reduces the activity of the enzyme glutamate-cysteine ligase.","definition_xrefs":["GOC:bf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of glutamate-cysteine ligase activity","termid":"GO:0035227"},{"relation_name":"is_a","term_name":"negative regulation of ligase activity","termid":"GO:0051352"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of glutamate-cysteine ligase activity","synonyms":[{"name":"down regulation of glutamate-cysteine ligase activity","type":"exact"},{"name":"down-regulation of glutamate-cysteine ligase activity","type":"exact"},{"name":"downregulation of glutamate-cysteine ligase activity","type":"exact"},{"name":"inhibition of glutamate-cysteine ligase activity","type":"narrow"}],"termid":"GO:0035228"}


id: GO:0061666
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the transfer of UFM1 to a substrate protein via the reaction X-UFM1 + S = X + S-UFM1, where X is either an E2 or E3 enzyme, the X-UFM1 linkage is a thioester bond, and the S-UFM1 linkage is an isopeptide bond between the C-terminal amino acid of UFM1 and the epsilon-amino group of lysine residues in the substrate.","definition_xrefs":["GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ubiquitin-like protein ligase activity","termid":"GO:0061659"},{"relation_name":"is_a","term_name":"UFM1 transferase activity","termid":"GO:0071568"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0019787"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0140096"},{"rel_name":"is_a","termid":"GO:0016746"}],"interesting_parent_ids":["GO:0003824","GO:0016746","GO:0019787","GO:0003674","GO:0016740","GO:0140096"],"is_obsolete":false,"name":"UFM1 ligase activity","synonyms":[{"name":"E3","type":"broad"}],"termid":"GO:0061666"}


id: PBO:0012055
data:
  {"annotation_feature_type":"gene","cv_name":"warning","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dpb3 was previously considered to be SPAC17G8.03c but this new gene product appears to be the true ortholog of DPB3/POLE4 see Treefam:TF103009","termid":"PBO:0012055"}


id: GO:0044217
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"Any constituent part of a secondary organism with which the first organism is interacting.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular anatomical entity","termid":"GO:0110165"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"other organism part","termid":"GO:0044217"}


id: PBO:0089361
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cell surface glycoprotein, flocculin","termid":"PBO:0089361"}


id: PBO:0074085
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"solute carrier family 26 member 2","termid":"PBO:0074085"}


id: PR:O94432
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A CUGBP Elav-like family member 4 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx","OMA:SCHPO02371"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized RNA-binding protein C660.15 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC660.15","secondary_identifiers":["UniProtKB:O94432"],"synonyms":[{"name":"Spom972h-CELF4","type":"exact"}],"termid":"PR:O94432"}


id: GO:0110081
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of placenta blood vessel development.","definition_xrefs":["PMID:27748453","GOC:BHF","GOC:BHF_miRNA","GOC:rph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of developmental process","termid":"GO:0051093"},{"relation_name":"is_a","term_name":"regulation of placenta blood vessel development","termid":"GO:0110079"},{"relation_name":"negatively_regulates","term_name":"placenta blood vessel development","termid":"GO:0060674"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of placenta blood vessel development","termid":"GO:0110081"}


id: GO:0045214
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The myofibril assembly process that results in the organization of muscle actomyosin into sarcomeres. The sarcomere is the repeating unit of a myofibril in a muscle cell, composed of an array of overlapping thick and thin filaments between two adjacent Z discs.","definition_xrefs":["GOC:bf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"actomyosin structure organization","termid":"GO:0031032"},{"relation_name":"part_of","term_name":"myofibril assembly","termid":"GO:0030239"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0044085"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0030036"},{"rel_name":"part_of","termid":"GO:0030036"},{"rel_name":"is_a","termid":"GO:0007010"},{"rel_name":"part_of","termid":"GO:0007010"}],"interesting_parent_ids":["GO:0044085","GO:0008150","GO:0007010","GO:0030036"],"is_obsolete":false,"name":"sarcomere organization","secondary_identifiers":["GO:0006938"],"synonyms":[{"name":"sarcomere alignment","type":"exact"},{"name":"sarcomere organisation","type":"exact"}],"termid":"GO:0045214"}


id: GO:0075107
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process in which the symbiont activates, maintains or increases the frequency, rate or extent of the host adenylate cyclase activity, which involves catalysis of the reaction: ATP = 3',5'-cyclic AMP + diphosphate. The host is defined as the larger of the organisms involved in a symbiotic interaction.","definition_xrefs":["GOC:pamgo_curators"],"gene_count":0,"genotype_count":0,"name":"obsolete positive regulation by symbiont of host adenylate cyclase activity (obsolete GO:0075107)","synonyms":[{"name":"positive regulation by symbiont of host 3',5'-cyclic AMP synthetase activity","type":"exact"},{"name":"positive regulation by symbiont of host ATP diphosphate-lyase (cyclizing ; 3',5'-cyclic-AMP-forming) activity","type":"exact"},{"name":"positive regulation by symbiont of host adenyl cyclase activity","type":"exact"},{"name":"positive regulation by symbiont of host adenylyl cyclase activity","type":"exact"},{"name":"positive regulation by symbiont of host adenylylcyclase activity","type":"exact"}],"termid":"GO:0075107"}


id: GO:0007063
data:
  {"annotated_genes":["SJAG_01716","SJAG_00823","SJAG_01825","SJAG_05978","SJAG_03591","SJAG_00369"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[87273,102234,111400,102135],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1905412"},{"annotations":[103301,102464],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0045875"},{"annotations":[103303],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1905406"}]},"cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of sister chromatid cohesion.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of cell cycle process","termid":"GO:0010564"},{"relation_name":"is_a","term_name":"regulation of chromosome organization","termid":"GO:0033044"},{"relation_name":"regulates","term_name":"sister chromatid cohesion","termid":"GO:0007062"}],"gene_count":6,"genes_by_uniquename":{"SJAG_00369":null,"SJAG_00823":null,"SJAG_01716":null,"SJAG_01825":null,"SJAG_03591":null,"SJAG_05978":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0007049"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0007049","GO:0008150"],"is_obsolete":false,"name":"regulation of sister chromatid cohesion","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0007063","terms_by_termid":{"GO:0045875":null,"GO:1905406":null,"GO:1905412":null}}


id: PBO:0068789
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 26, pseudogene","termid":"PBO:0068789"}


id: FYPO:0009073
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A vegetative cell population growth phenotype in which cell growth is decreased relative to normal in a medium containing lysine as the nitrogen source.","definition_xrefs":["PomBase:mlr"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased vegetative cell population growth","termid":"FYPO:0001355"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0002057"},{"rel_name":"is_a","termid":"FYPO:0000003"},{"rel_name":"is_a","termid":"FYPO:0002058"},{"rel_name":"is_a","termid":"FYPO:0000139"},{"rel_name":"is_a","termid":"FYPO:0002060"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000139","FYPO:0002058","FYPO:0000003","FYPO:0005447","FYPO:0002057","FYPO:0002060"],"is_obsolete":false,"name":"decreased cell population growth on lysine nitrogen source","synonyms":[{"name":"decreased growth on lysine nitrogen source","type":"broad"},{"name":"decreased vegetative cell growth on lysine nitrogen source","type":"exact"},{"name":"growth defect, slow growth with lysine nitrogen source","type":"related"},{"name":"reduced cell growth on lysine nitrogen source","type":"related"},{"name":"slow cell growth on lysine nitrogen source","type":"narrow"}],"termid":"FYPO:0009073"}


id: PBO:0068906
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 148, pseudogene","termid":"PBO:0068906"}


id: GO:1904522
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of myofibroblast cell apoptotic process.","definition_xrefs":["GO_REF:0000058","GOC:TermGenie","PMID:26119034"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of apoptotic process","termid":"GO:0043065"},{"relation_name":"is_a","term_name":"regulation of myofibroblast cell apoptotic process","termid":"GO:1904520"},{"relation_name":"positively_regulates","term_name":"myofibroblast cell apoptotic process","termid":"GO:1904516"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of myofibroblast cell apoptotic process","synonyms":[{"name":"activation of MFB apoptosis","type":"narrow"},{"name":"activation of MFB apoptotic process","type":"narrow"},{"name":"activation of myofibroblast cell apoptosis","type":"narrow"},{"name":"activation of myofibroblast cell apoptotic process","type":"narrow"},{"name":"positive regulation of MFB apoptosis","type":"narrow"},{"name":"positive regulation of MFB apoptotic process","type":"exact"},{"name":"positive regulation of myofibroblast cell apoptosis","type":"narrow"},{"name":"up regulation of MFB apoptosis","type":"narrow"},{"name":"up regulation of MFB apoptotic process","type":"exact"},{"name":"up regulation of myofibroblast cell apoptosis","type":"narrow"},{"name":"up regulation of myofibroblast cell apoptotic process","type":"exact"},{"name":"up-regulation of MFB apoptosis","type":"narrow"},{"name":"up-regulation of MFB apoptotic process","type":"exact"},{"name":"up-regulation of myofibroblast cell apoptosis","type":"narrow"},{"name":"up-regulation of myofibroblast cell apoptotic process","type":"exact"},{"name":"upregulation of MFB apoptosis","type":"narrow"},{"name":"upregulation of MFB apoptotic process","type":"exact"},{"name":"upregulation of myofibroblast cell apoptosis","type":"narrow"},{"name":"upregulation of myofibroblast cell apoptotic process","type":"exact"}],"termid":"GO:1904522"}


id: FYPO:0007860
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which the spindle pole body (SPB) duplicates normally, and the SPBs separate, in a cell that does not form a mitotic spindle or undergo cytokinesis. The DNA and nucleus may go on to divide in the absence of a spindle, with each DNA mass associated with an SPB.","definition_xrefs":["PMID:20967237","PomBase:jh","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal cell cycle process","termid":"FYPO:0002734"},{"relation_name":"part_of","term_name":"nuclear division in absence of mitotic spindle","termid":"FYPO:0007859"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"part_of","termid":"FYPO:0000337"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"part_of","termid":"FYPO:0005447"},{"rel_name":"part_of","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"part_of","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0000631"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0001985","FYPO:0000002","FYPO:0000631","FYPO:0001320","FYPO:0000337"],"is_obsolete":false,"name":"spindle pole body separation in absence of mitotic spindle","synonyms":[{"name":"SPB separation in absence of mitotic spindle","type":"exact"},{"name":"spindle pole body separation in absence of mitotic spindle during mitotic cell cycle","type":"related"},{"name":"spindle pole body separation in absence of mitotic spindle during vegetative growth","type":"exact"}],"termid":"FYPO:0007860"}


id: PBO:0055377
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2806","termid":"PBO:0055377"}


id: PR:P11620
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A ras-related protein Rab-1B that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO03481","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"GTP-binding protein ypt1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC1703.10","secondary_identifiers":["UniProtKB:P11620"],"synonyms":[{"name":"Spom972h-RAB1B","type":"exact"}],"termid":"PR:P11620"}


id: PBO:0090489
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glutamate synthase (GOGAT) Glt1","termid":"PBO:0090489"}


id: GO:0090170
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the rate, frequency or extent of Golgi inheritance. Golgi inheritance is the partitioning of Golgi apparatus between daughter cells at cell division.","definition_xrefs":["GOC:tb","GOC:dph","GOC:ascb_2009"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of Golgi organization","termid":"GO:1903358"},{"relation_name":"regulates","term_name":"Golgi inheritance","termid":"GO:0048313"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of Golgi inheritance","termid":"GO:0090170"}


id: PBO:0058592
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 6724-3","termid":"PBO:0058592"}


id: PBO:0026822
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_ubiquitin-specific_protease_activity","termid":"PBO:0026822"}


id: PBO:0057589
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 892b","termid":"PBO:0057589"}


id: GO:0102864
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 1-18:3-2-18:2-phosphatidylcholine + O2 + a reduced electron acceptor = 1-18:3-2-18:3-phosphatidylcholine + 2 H2O + an oxidized electron acceptor.","definition_xrefs":["GOC:pz","EC:1.14.19.-"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water","termid":"GO:0016717"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003824","GO:0016491","GO:0003674"],"is_obsolete":false,"name":"1-18:3-2-18:2-phosphatidylcholine desaturase activity","secondary_identifiers":["MetaCyc:RXN-8331"],"termid":"GO:0102864"}


id: GO:0005127
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a ciliary neurotrophic factor receptor.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cytokine receptor binding","termid":"GO:0005126"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0005515"}],"interesting_parent_ids":["GO:0005488","GO:0003674","GO:0005515"],"is_obsolete":false,"name":"ciliary neurotrophic factor receptor binding","synonyms":[{"name":"ciliary neurotrophic factor","type":"narrow"},{"name":"ciliary neurotrophic factor receptor ligand","type":"narrow"}],"termid":"GO:0005127"}


id: PBO:0044716
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DEAD/H-box helicase 11 like 3 (pseudogene)","termid":"PBO:0044716"}


id: PBO:0067826
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 5S ribosomal pseudogene 128","termid":"PBO:0067826"}


id: GO:1900667
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of endocrocin biosynthetic process.","definition_xrefs":["GOC:TermGenie","GOC:di"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of ketone biosynthetic process","termid":"GO:0010566"},{"relation_name":"is_a","term_name":"regulation of secondary metabolite biosynthetic process","termid":"GO:1900376"},{"relation_name":"regulates","term_name":"endocrocin biosynthetic process","termid":"GO:1900602"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0044281"},{"rel_name":"regulates","termid":"GO:0019748"}],"interesting_parent_ids":["GO:0044281","GO:0019748","GO:0008150"],"is_obsolete":false,"name":"regulation of endocrocin biosynthetic process","synonyms":[{"name":"regulation of endocrocin anabolism","type":"exact"},{"name":"regulation of endocrocin biosynthesis","type":"exact"},{"name":"regulation of endocrocin formation","type":"exact"},{"name":"regulation of endocrocin synthesis","type":"exact"}],"termid":"GO:1900667"}


id: GO:0090148
data:
  {"annotated_genes":["SJAG_02848","SJAG_03464","SJAG_05261","SJAG_02384"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[90627,98570,98301],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0090149"},{"annotations":[95710],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0099050"}]},"cv_name":"biological_process","definition":"A process that is carried out at the cellular level which results in the separation of a single continuous membrane into two membranes.","definition_xrefs":["GOC:dph","GOC:tb","GOC:ascb_2009"],"direct_ancestors":[{"relation_name":"is_a","term_name":"membrane organization","termid":"GO:0061024"}],"gene_count":4,"genes_by_uniquename":{"SJAG_02384":null,"SJAG_02848":null,"SJAG_03464":null,"SJAG_05261":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0061024"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0061024","GO:0008150"],"is_obsolete":false,"name":"membrane fission","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"membrane scission","type":"exact"}],"termid":"GO:0090148","terms_by_termid":{"GO:0090149":null,"GO:0099050":null}}


id: FYPO:0009100
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A vegetative cell population growth phenotype in which cell growth is decreased relative to normal in a medium containing glycerol and galactose carbon sources.","direct_ancestors":[{"relation_name":"is_a","term_name":"decreased vegetative cell population growth","termid":"FYPO:0001355"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0002058"},{"rel_name":"is_a","termid":"FYPO:0000003"},{"rel_name":"is_a","termid":"FYPO:0002060"},{"rel_name":"is_a","termid":"FYPO:0000139"},{"rel_name":"is_a","termid":"FYPO:0002057"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0000003","FYPO:0002058","FYPO:0002060","FYPO:0005447","FYPO:0002057","FYPO:0000139","FYPO:0001985"],"is_obsolete":false,"name":"decreased cell population growth on glycerol and galactose carbon source","synonyms":[{"name":"decreased vegetative cell growth on glycerol and galactose carbon source","type":"exact"}],"termid":"FYPO:0009100"}


id: PR:Q9P7J4
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- mft1 gene.","definition_xrefs":["UniProtKB:Q9P7J4","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"THO complex subunit mft1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC24B10.11c","synonyms":[{"name":"Spom972h-mft1","type":"exact"}],"termid":"PR:Q9P7J4"}


id: GO:0000386
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the second transesterification reaction of spliceosomal mRNA splicing. Ligation of the two exons occurs via a transesterification reaction where the free 3'-hydroxyl group of the 5' exon is the nucleophile attacking the 3' splice site. Non-expressed sequences are now detached from the exons. In cis splicing, the intron is in a lariat structure.","definition_xrefs":["GOC:krc","ISBN:0879695897","PMID:19239890"],"direct_ancestors":[{"relation_name":"is_a","term_name":"catalytic activity, acting on RNA","termid":"GO:0140098"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0140098"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0140098","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"second spliceosomal transesterification activity","secondary_identifiers":["Reactome:R-HSA-9770236"],"synonyms":[{"name":"3'-splice site cleavage, exon ligation","type":"broad"},{"name":"lariat formation, 5'-splice site cleavage","type":"related"}],"termid":"GO:0000386"}


id: PBO:0055047
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2462","termid":"PBO:0055047"}


id: MOD:00088
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-threonine residue to O-palmitoyl-L-threonine.","definition_xrefs":["OMSSA:95","PubMed:6642431","PubMed:8413602","RESID:AA0079","Unimod:47#T"],"direct_ancestors":[{"relation_name":"is_a","term_name":"O-palmitoylated residue","termid":"MOD:00652"},{"relation_name":"is_a","term_name":"O3-acylated L-threonine","termid":"MOD:02004"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:00649"}],"interesting_parent_ids":["MOD:00649"],"is_obsolete":false,"name":"O-palmitoyl-L-threonine","synonyms":[{"name":"(2S,3R)-2-amino-3-(hexadecanoyloxy)butanoic acid","type":"exact"},{"name":"L-threonine hexadecanoate ester","type":"exact"},{"name":"LIPID O-palmitoyl threonine","type":"exact"},{"name":"O-hexadecanoylated L-threonine","type":"exact"},{"name":"O-palmitoyl-L-threonine","type":"exact"},{"name":"O-palmitoylated L-threonine","type":"exact"},{"name":"O3-palmitoyl-threonine","type":"exact"},{"name":"OPamThr","type":"exact"},{"name":"Palmitoyl","type":"related"},{"name":"Palmitoylation","type":"related"},{"name":"palmitoylationt","type":"exact"},{"name":"threonine palmitate ester","type":"exact"}],"termid":"MOD:00088"}


id: PBO:0035723
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_protein_glycosylation_during_vegetative_growth","termid":"PBO:0035723"}


id: PBO:0051546
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"interleukin 6 signal transducer pseudogene 1","termid":"PBO:0051546"}


id: GO:0140075
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that controls lipoprotein transport.","definition_xrefs":["GOC:RPH","GOC:BHF_miRNA","GOC:BHF","PMID:26501192"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of protein transport","termid":"GO:0051223"},{"relation_name":"regulates","term_name":"lipoprotein transport","termid":"GO:0042953"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0008150","GO:0006810"],"is_obsolete":false,"name":"regulation of lipoprotein transport","termid":"GO:0140075"}


id: GO:0018453
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 2-hydroxytetrahydrofuran = 2 H+ + 2 e- + butyrolactone.","definition_xrefs":["UM-BBD_reactionID:r0018"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor","termid":"GO:0016616"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016491","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"2-hydroxytetrahydrofuran dehydrogenase activity","termid":"GO:0018453"}


id: FYPO:0004800
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which premeiotic DNA replication does not occur during a cycle of azygotic meiosis and sporulation. Azygotic meiosis and sporulation occur when meiosis takes place within a diploid cell rather than in a zygote produced by sporulation. Zygotes can resume vegetative growth and form colonies of diploid cells if returned to rich media before commitment to meiosis; under nitrogen starvation, diploid cells heterozygous for mating type will undergo azygotic meiosis. Azygotic asci have a characteristic linear morphology resembling that of a single vegetatively growing cell.","definition_xrefs":["PomBase:mah","PMID:22558440","PMID:25891897"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abolished premeiotic DNA replication","termid":"FYPO:0002044"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0000293"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001985","FYPO:0000293","FYPO:0000631","FYPO:0005447"],"is_obsolete":false,"name":"abolished premeiotic DNA replication during azygotic meiotic cell cycle","synonyms":[{"name":"abolished DNA replication before azygotic meiotic cell cycle","type":"exact"},{"name":"abolished premeiotic DNA replication during azygotic meiosis","type":"related"},{"name":"abolished premeiotic DNA replication during azygotic meiosis and sporulation","type":"exact"},{"name":"absent premeiotic DNA replication during azygotic meiotic cell cycle","type":"exact"},{"name":"premeiotic DNA replication abolished during azygotic meiotic cell cycle","type":"exact"}],"termid":"FYPO:0004800"}


id: GO:0002100
data:
  {"annotated_genes":["SJAG_04189","SJAG_04380","SJAG_00352"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[96899,99789,100077],"is_not":false,"summary":null,"term":"GO:0002100"}]},"cv_name":"biological_process","definition":"The process in which an adenosine in position 34 of a tRNA is post-transcriptionally converted to inosine.","definition_xrefs":["GOC:hjd","ISBN:155581073X"],"direct_ancestors":[{"relation_name":"is_a","term_name":"tRNA wobble base modification","termid":"GO:0002097"},{"relation_name":"is_a","term_name":"adenosine to inosine editing","termid":"GO:0006382"}],"gene_count":3,"genes_by_uniquename":{"SJAG_00352":null,"SJAG_04189":null,"SJAG_04380":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006399"}],"interesting_parent_ids":["GO:0006399","GO:0010467","GO:0008150"],"is_obsolete":false,"name":"tRNA wobble adenosine to inosine editing","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0002100","terms_by_termid":{"GO:0002100":null}}


id: PBO:0072567
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RRBP1 pseudogene 2","termid":"PBO:0072567"}


id: FYPO:0001381
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which the observed rate of a protein kinase activity is abnormal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal catalytic activity","termid":"FYPO:0000661"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000707"},{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0000661"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000654"}],"interesting_parent_ids":["FYPO:0000661","FYPO:0001985","FYPO:0000707","FYPO:0000652","FYPO:0000654"],"is_obsolete":false,"name":"abnormal protein kinase activity","termid":"FYPO:0001381"}


id: PBO:0078573
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tripartite motif-containing 51G","termid":"PBO:0078573"}


id: GO:0018357
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The linkage of the chromophore phycourobilin to phycoerythrins via phycourobilin-bis-L-cysteine.","definition_xrefs":["RESID:AA0260"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein-phycourobilin linkage","termid":"GO:0017010"},{"relation_name":"is_a","term_name":"peptidyl-cysteine modification","termid":"GO:0018198"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"protein-phycourobilin linkage via phycourobilin-bis-L-cysteine","secondary_identifiers":["GO:0018383"],"termid":"GO:0018357"}


id: PBO:0054357
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1750","termid":"PBO:0054357"}


id: GO:0140898
data:
  {"annotated_genes":["SJAG_00170","SJAG_03047"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[98201,105603],"is_not":false,"summary":null,"term":"GO:0140898"}]},"cv_name":"biological_process","definition":"A chromatin remodeling process in which CENP-A is removed from euchromatin regions to prevent neocentromere formation.","definition_xrefs":["PMID:27666591"],"direct_ancestors":[{"relation_name":"is_a","term_name":"chromatin remodeling","termid":"GO:0006338"}],"gene_count":2,"genes_by_uniquename":{"SJAG_00170":null,"SJAG_03047":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006325"}],"interesting_parent_ids":["GO:0008150","GO:0006325"],"is_obsolete":false,"name":"CENP-A eviction from euchromatin","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0140898","terms_by_termid":{"GO:0140898":null}}


id: GO:0042130
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the rate or extent of T cell proliferation.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of T cell proliferation","termid":"GO:0042129"},{"relation_name":"is_a","term_name":"negative regulation of lymphocyte proliferation","termid":"GO:0050672"},{"relation_name":"is_a","term_name":"negative regulation of T cell activation","termid":"GO:0050868"},{"relation_name":"negatively_regulates","term_name":"T cell proliferation","termid":"GO:0042098"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"negatively_regulates","termid":"GO:0007155"},{"rel_name":"regulates","termid":"GO:0007155"}],"interesting_parent_ids":["GO:0007155","GO:0008150"],"is_obsolete":false,"name":"negative regulation of T cell proliferation","synonyms":[{"name":"down regulation of T cell proliferation","type":"exact"},{"name":"down-regulation of T cell proliferation","type":"exact"},{"name":"downregulation of T cell proliferation","type":"exact"},{"name":"inhibition of T cell proliferation","type":"narrow"},{"name":"negative regulation of T lymphocyte proliferation","type":"exact"},{"name":"negative regulation of T-cell proliferation","type":"exact"},{"name":"negative regulation of T-lymphocyte proliferation","type":"exact"}],"termid":"GO:0042130"}


id: PBO:0050270
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"high mobility group nucleosomal binding domain 2 pseudogene 48","termid":"PBO:0050270"}


id: PBO:0043994
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CSGALNACT2 pseudogene 1","termid":"PBO:0043994"}


id: GO:0006865
data:
  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id: PBO:0086531
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Putative protein of unknown function; conserved among S. cerevisiae strains; not conserved in closely related Saccharomyces species; 26% of ORF overlaps the dubious ORF YDR524C-A; insertion mutation in a cdc34-2 mutant background causes altered bud morphology","termid":"PBO:0086531"}


id: GO:0002239
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id: FYPO:0007885
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which occurrence of Lms2-8 complex binding by a gene product (usually a protein) in a mutant is decreased. The affected gene product may be encoded by the mutated gene, or by a different gene.","definition_xrefs":["PomBase:mah","PMID:33378677"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal protein complex binding","termid":"FYPO:0003591"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0000702"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000707"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000707","FYPO:0000702","FYPO:0000652"],"is_obsolete":false,"name":"decreased Lsm2-8 complex binding","synonyms":[{"name":"reduced Lsm2-8 complex binding","type":"exact"}],"termid":"FYPO:0007885"}


id: GO:0140924
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id: FYPO:0006588
data:
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id: PBO:0085573
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  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein interacting with Arl3p; Arl3p is a GTPase of the Ras superfamily involved in vesicle-tethering at the Golgi; putative ortholog of human SCOCO","termid":"PBO:0085573"}


id: PBO:0075223
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sorting nexin 2","termid":"PBO:0075223"}


id: PBO:0059748
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  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MT-CO3 pseudogene 22","termid":"PBO:0059748"}


id: FYPO:0001555
data:
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id: PATO:0002441
data:
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id: FYPO:0004374
data:
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