# terms

id: PBO:0079217
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"thiosulfate sulfurtransferase like domain containing 2","termid":"PBO:0079217"}


id: PBO:0082929
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Cytoplasmic and mitochondrial alanyl-tRNA synthetase; required for protein synthesis; point mutation (cdc64-1 allele) causes cell cycle arrest at G1; lethality of null mutation is functionally complemented by human homolog AARS; mutations in human homolog AARS are associated with autoimmune disease polymyositis/dermatomyositis and with hereditary peripheral neuropathy, Charcot-Marie-Tooth (CMT) disease","termid":"PBO:0082929"}


id: GO:0018730
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: acetyl-CoA + (E)-glutaconate = acetate + glutaconyl-1-CoA.","definition_xrefs":["EC:2.8.3.12"],"direct_ancestors":[{"relation_name":"is_a","term_name":"CoA-transferase activity","termid":"GO:0008410"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016782"},{"rel_name":"is_a","termid":"GO:0016740"}],"interesting_parent_ids":["GO:0003824","GO:0016782","GO:0003674","GO:0016740"],"is_obsolete":false,"name":"glutaconate CoA-transferase activity","secondary_identifiers":["MetaCyc:GLUTACONATE-COA-TRANSFERASE-RXN","UM-BBD_reactionID:r0085","RHEA:23208"],"synonyms":[{"name":"acetyl-CoA:(E)-glutaconate CoA-transferase activity","type":"related"}],"termid":"GO:0018730"}


id: PBO:0043097
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"carbohydrate sulfotransferase 9","termid":"PBO:0043097"}


id: PBO:0070877
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L15 pseudogene 8","termid":"PBO:0070877"}


id: PR:O74776
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A mitochondrial ribosome-associated GTPase 1 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial ribosome-associated GTPase 1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC25B2.04c","secondary_identifiers":["UniProtKB:O74776"],"synonyms":[{"name":"SPBC25B2.04c","type":"related"},{"name":"Spom972h-MTG1","type":"exact"}],"termid":"PR:O74776"}


id: FYPO:0001295
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which the observed rate of palmitoyl-CoA ligase activity is normal (i.e. indistinguishable from wild type).","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal catalytic activity","termid":"FYPO:0000660"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0000654"},{"rel_name":"is_a","termid":"FYPO:0000652"}],"interesting_parent_ids":["FYPO:0000654","FYPO:0000257","FYPO:0000652"],"is_obsolete":false,"name":"normal palmitoyl-CoA ligase activity","synonyms":[{"name":"normal palmitoyl-CoA synthetase activity","type":"exact"}],"termid":"FYPO:0001295"}


id: PBO:0073952
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"solute carrier family 22 member 1","termid":"PBO:0073952"}


id: PBO:0040778
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"bestrophin 4","termid":"PBO:0040778"}


id: PBO:0064969
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PRAME family member 25","termid":"PBO:0064969"}


id: PATO:0001701
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A quality inhering in a bearer by virtue of the bearer's exhibiting complete growth, differentiation, or development.","definition_xrefs":["Merriam-Webster:Merriam-Webster"],"direct_ancestors":[{"relation_name":"is_a","term_name":"maturity","termid":"PATO:0000261"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mature","termid":"PATO:0001701"}


id: PBO:0012836
data:
  {"annotation_feature_type":"gene","cv_name":"complementation","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"functionally complented by H. sapiens KRAS","termid":"PBO:0012836"}


id: PR:Q96WV4
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"An androgen-induced gene 1 protein that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO02556","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"UPF0641 membrane protein PJ4664.05 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBPJ4664.05","secondary_identifiers":["UniProtKB:Q96WV4"],"synonyms":[{"name":"Spom972h-AIG1","type":"exact"}],"termid":"PR:Q96WV4"}


id: PBO:0076564
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TBC1 domain family member 3E","termid":"PBO:0076564"}


id: SO:0001364
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"5_methylaminomethyluridine is a modified uridine base feature.","direct_ancestors":[{"relation_name":"is_a","term_name":"modified_uridine","termid":"SO:0001277"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"five_methylaminomethyluridine","secondary_identifiers":["RNAMOD:072"],"synonyms":[{"name":"5-methylaminomethyluridine","type":"exact"},{"name":"five methylaminomethyluridine","type":"exact"},{"name":"mnm5U","type":"exact"}],"termid":"SO:0001364"}


id: GO:0060069
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The series of molecular signals initiated by binding of Wnt protein to a frizzled family receptor on the surface of the target cell and ending with the positioning of the mitotic spindle.","definition_xrefs":["GOC:dph","PMID:11532397","GOC:bf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of cell cycle process","termid":"GO:0010564"},{"relation_name":"is_a","term_name":"regulation of localization","termid":"GO:0032879"},{"relation_name":"is_a","term_name":"non-canonical Wnt signaling pathway","termid":"GO:0035567"},{"relation_name":"is_a","term_name":"regulation of microtubule cytoskeleton organization","termid":"GO:0070507"},{"relation_name":"regulates","term_name":"establishment of mitotic spindle localization","termid":"GO:0040001"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0007010"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0023052"},{"rel_name":"regulates","termid":"GO:0000226"},{"rel_name":"regulates","termid":"GO:0007049"}],"interesting_parent_ids":["GO:0000226","GO:0007049","GO:0007010","GO:0023052","GO:0008150"],"is_obsolete":false,"name":"Wnt signaling pathway, regulating spindle positioning","synonyms":[{"name":"Wnt receptor signaling pathway, regulating spindle positioning","type":"exact"},{"name":"Wnt receptor signalling pathway, regulating spindle positioning","type":"exact"},{"name":"Wnt-activated signaling pathway, regulating spindle positioning","type":"exact"},{"name":"non-canonical Wnt signaling pathway","type":"broad"}],"termid":"GO:0060069"}


id: FYPO:0005370
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which occurrence of errors, usually small deletions, upon repair of double-strand breaks in DNA by nonhomologous end joining is increased.","definition_xrefs":["PomBase:mah","PMID:11226171"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal double-strand break repair via nonhomologous end joining","termid":"FYPO:0003661"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000298"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000293"}],"interesting_parent_ids":["FYPO:0000298","FYPO:0000002","FYPO:0000293","FYPO:0005447","FYPO:0001320","FYPO:0001985"],"is_obsolete":false,"name":"decreased fidelity of double-strand break repair via nonhomologous end joining","termid":"FYPO:0005370"}


id: PBO:0025490
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"APC ubiquitin conjugating enzyme E2 Ubc4/UbcP1","termid":"PBO:0025490"}


id: MOD:00090
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-alanine residue to L-alanine amide.","definition_xrefs":["RESID:AA0081","PubMed:1377792","PubMed:8472537","PubMed:2069951","PubMed:952951"],"direct_ancestors":[{"relation_name":"is_a","term_name":"C1-amidated residue","termid":"MOD:00883"},{"relation_name":"is_a","term_name":"modified L-alanine residue","termid":"MOD:00901"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"L-alanine amide","synonyms":[{"name":"(2S)-2-aminopropanamide","type":"exact"},{"name":"AlaN","type":"exact"},{"name":"L-alanine amide","type":"exact"},{"name":"MOD_RES Alanine amide","type":"exact"},{"name":"alaninamide","type":"exact"},{"name":"amidated L-alanine","type":"exact"}],"termid":"MOD:00090"}


id: PBO:0049824
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"HD domain containing 3","termid":"PBO:0049824"}


id: GO:0036291
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The phosphorylation by a protein of one or more of its own amino acid residues.","definition_xrefs":["GOC:jsg","PMID:9201908"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein autophosphorylation","termid":"GO:0046777"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"protein cis-autophosphorylation","synonyms":[{"name":"cis-autophosphorylation","type":"exact"}],"termid":"GO:0036291"}


id: PBO:0082113
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Acetyl-CoA C-acetyltransferase (acetoacetyl-CoA thiolase); cytosolic enzyme that transfers an acetyl group from one acetyl-CoA molecule to another, forming acetoacetyl-CoA; involved in the first step in mevalonate biosynthesis; human ACAT1 functionally complements the growth defect caused by repression of ERG10 expression","termid":"PBO:0082113"}


id: PBO:0089544
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Set1C complex WD repeat protein Swd3","termid":"PBO:0089544"}


id: GO:0043737
data:
  {"annotated_genes":["SJAG_02790"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[87754],"is_not":false,"summary":null,"term":"GO:0043737"}]},"cv_name":"molecular_function","definition":"Catalysis of the endonucleolytic cleavage at apurinic or apyrimidinic sites to products with a 5'-phosphate.","definition_xrefs":["EC:3.1.21.7"],"direct_ancestors":[{"relation_name":"is_a","term_name":"endodeoxyribonuclease activity, producing 5'-phosphomonoesters","termid":"GO:0016888"}],"gene_count":1,"genes_by_uniquename":{"SJAG_02790":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0016788"},{"rel_name":"is_a","termid":"GO:0140097"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016787","GO:0003824","GO:0003674","GO:0016788","GO:0140097"],"is_obsolete":false,"name":"deoxyribonuclease V activity","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["MetaCyc:3.1.21.7-RXN"],"synonyms":[{"name":"DNase V activity","type":"related"},{"name":"Escherichia coli endodeoxyribonuclease V activity","type":"narrow"},{"name":"endodeoxyribonuclease V","type":"exact"},{"name":"endonuclease V activity","type":"broad"}],"termid":"GO:0043737","terms_by_termid":{"GO:0043737":null}}


id: PBO:0031911
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA N6-threonyl-carbamoyl-adenosine (t6A) Sua5 (predicted)","termid":"PBO:0031911"}


id: PR:Q9UTF8
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- ugo1 gene.","definition_xrefs":["UniProtKB:Q9UTF8","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial fusion and transport protein ugo1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC1B2.02c","synonyms":[{"name":"Spom972h-ugo1","type":"exact"}],"termid":"PR:Q9UTF8"}


id: GO:0051872
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of sphingosine (sphing-4-enine), trans-D-erytho-2-amino-octadec-4-ene-1,3-diol, a long chain amino diol sphingoid base that occurs in most sphingolipids in animal tissues.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"sphingosine metabolic process","termid":"GO:0006670"},{"relation_name":"is_a","term_name":"diol catabolic process","termid":"GO:0034313"},{"relation_name":"is_a","term_name":"sphingoid catabolic process","termid":"GO:0046521"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006629"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0044248"}],"interesting_parent_ids":["GO:0008150","GO:0044281","GO:0044248","GO:0006629"],"is_obsolete":false,"name":"sphingosine catabolic process","synonyms":[{"name":"(4E)-sphing-4-enine catabolic process","type":"exact"},{"name":"(4E)-sphing-4-enine catabolism","type":"exact"},{"name":"sphing-4-enine catabolic process","type":"exact"},{"name":"sphing-4-enine catabolism","type":"exact"}],"termid":"GO:0051872"}


id: GO:0009725
data:
  {"annotated_genes":["SJAG_04270","SJAG_02080","SJAG_06592"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[103608],"is_not":false,"summary":null,"term":"GO:0009725"},{"annotations":[91866],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0033211"},{"annotations":[107795],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0009736"}]},"cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a hormone stimulus.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to endogenous stimulus","termid":"GO:0009719"},{"relation_name":"is_a","term_name":"response to organic substance","termid":"GO:0010033"}],"gene_count":3,"genes_by_uniquename":{"SJAG_02080":null,"SJAG_04270":null,"SJAG_06592":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"response to hormone","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"growth regulator","type":"related"},{"name":"response to hormone stimulus","type":"exact"}],"termid":"GO:0009725","terms_by_termid":{"GO:0009725":null,"GO:0009736":null,"GO:0033211":null}}


id: PBO:0110832
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DNA-binding transcription factor, zf-GATA-type, amino acid sensing, Fil1","termid":"PBO:0110832"}


id: PBO:0086163
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein required for ribosomal large subunit maturation; functionally redundant with Ssf1p; member of the Brix family; SSF2 has a paralog, SSF1, that arose from the whole genome duplication","termid":"PBO:0086163"}


id: GO:0015468
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Plasmid-encoded bacteriocins which are produced by enteric bacteria. Exert a lethal effect on other bacteria including E. coli strains that lack the Col plasmid. Bind to a cell surface receptor and are transported into the periplasm via an energy-dependent process involving a TonB- or TolA-dependent hetero-oligomeric protein complex. Some colicins kill their target cell by inserting into the cytoplasmic membrane where they form voltage-sensitive (trans-negative) channels that depolarize and deenergize the cell, and thereby kill it.","definition_xrefs":["TC:1.C.1.-.-"],"gene_count":0,"genotype_count":0,"name":"obsolete colicin (obsolete GO:0015468)","synonyms":[{"name":"colicin","type":"exact"}],"termid":"GO:0015468"}


id: PBO:0054149
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1516","termid":"PBO:0054149"}


id: PBO:0044115
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cancer/testis antigen 1B","termid":"PBO:0044115"}


id: GO:0010489
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: UDP-4-keto-6-deoxyglucose = UDP-4-keto-rhamnose.","definition_xrefs":["PMID:17190829","GOC:tair_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"racemase and epimerase activity, acting on carbohydrates and derivatives","termid":"GO:0016857"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016853"}],"interesting_parent_ids":["GO:0003824","GO:0016853","GO:0003674"],"is_obsolete":false,"name":"UDP-4-keto-6-deoxy-glucose-3,5-epimerase activity","termid":"GO:0010489"}


id: PBO:0013840
data:
  {"annotation_feature_type":"gene","cv_name":"name_description","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Oxidative Stress-induced Reductase","termid":"PBO:0013840"}


id: PBO:0045550
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dual specificity phosphatase 5","termid":"PBO:0045550"}


id: PR:O42931
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A 26S protease regulatory subunit 7 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO04090","PANTHER:PTHR23073:SF13","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"26S protease regulatory subunit 7 homolog (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC16C6.07c","secondary_identifiers":["UniProtKB:O42931"],"synonyms":[{"name":"Spom972h-PSMC2","type":"exact"}],"termid":"PR:O42931"}


id: SOFP:aminoacid
data:
  {"annotation_feature_type":"gene","cv_name":"feature_property","definition":"amino acid coded for by a tRNA transcript feature","definition_xrefs":["so:cjm"],"direct_ancestors":[{"relation_name":"is_a","term_name":"feature_property","termid":"SOFP:feature_property"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"aminoacid","termid":"SOFP:aminoacid"}


id: FYPO:0002288
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"OBSOLETE. A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the phosphorylation of tyrosine residues in one or more specific proteins, or of specific protein sites, does not occur.","definition_xrefs":["PomBase:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete abolished protein tyrosine phosphorylation during vegetative growth (obsolete FYPO:0002288)","synonyms":[{"name":"abolished peptidyl-tyrosine phosphorylation during vegetative growth","type":"exact"},{"name":"abolished protein tyrosine phosphorylation during mitotic cell cycle","type":"related"},{"name":"protein tyrosine phosphorylation abolished during vegetative growth","type":"exact"}],"termid":"FYPO:0002288"}


id: PR:O74337
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPBC1A4.04 gene.","definition_xrefs":["UniProtKB:O74337","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized protein C1A4.04 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC1A4.04","synonyms":[{"name":"Spom972h-SPBC1A4.04","type":"exact"}],"termid":"PR:O74337"}


id: _global:is_measurement_of
data:
  {"annotation_feature_type":"gene","cv_name":"pato.ontology","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"is_measurement_of","termid":"_global:is_measurement_of"}


id: PBO:0031362
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-resistance_to_K-252a","termid":"PBO:0031362"}


id: GO:0098507
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process of removing one or more phosphate groups from the 5' end of a polynucleotide.","definition_xrefs":["GOC:dos"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nucleobase-containing compound metabolic process","termid":"GO:0006139"},{"relation_name":"is_a","term_name":"dephosphorylation","termid":"GO:0016311"},{"relation_name":"is_a","term_name":"macromolecule metabolic process","termid":"GO:0043170"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"polynucleotide 5' dephosphorylation","termid":"GO:0098507"}


id: PBO:0042691
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cat eye syndrome chromosome region, candidate 9","termid":"PBO:0042691"}


id: PBO:0042424
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cell division cycle 27 pseudogene 8","termid":"PBO:0042424"}


id: GO:2000668
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of dendritic cell apoptotic process.","definition_xrefs":["GOC:mtg_apoptosis","GOC:obol"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of leukocyte apoptotic process","termid":"GO:2000106"},{"relation_name":"regulates","term_name":"dendritic cell apoptotic process","termid":"GO:0097048"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of dendritic cell apoptotic process","synonyms":[{"name":"regulation of dendritic cell apoptosis","type":"narrow"}],"termid":"GO:2000668"}


id: PBO:0060698
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NADH:ubiquinone oxidoreductase subunit A3 pseudogene 6","termid":"PBO:0060698"}


id: PBO:0065550
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"prostaglandin E receptor 4","termid":"PBO:0065550"}


id: GO:0050478
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: 5,6,7,8-tetrahydrobiopterin + anthranilate + O2 = 3-hydroxyanthranilate + 7,8-dihydrobiopterin + H2O.","definition_xrefs":["GOC:curators"],"gene_count":0,"genotype_count":0,"name":"obsolete anthranilate 3-monooxygenase activity (obsolete GO:0050478)","synonyms":[{"name":"anthranilate 3-hydroxylase activity","type":"exact"},{"name":"anthranilate,tetrahydrobiopterin:oxygen oxidoreductase (3-hydroxylating)","type":"related"},{"name":"anthranilic acid hydroxylase activity","type":"broad"}],"termid":"GO:0050478"}


id: GO:0090496
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The migration of mesenchymal tissue that contributes to the formation of a limb bud.","definition_xrefs":["GOC:tb","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mesenchyme migration","termid":"GO:0090131"},{"relation_name":"part_of","term_name":"limb bud formation","termid":"GO:0060174"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"mesenchyme migration involved in limb bud formation","termid":"GO:0090496"}


id: GO:0052216
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The directed movement of a motile cell or organism in response to a specific chemical concentration gradient on, within or near a second organism, where the two organisms are in a symbiotic interaction.","definition_xrefs":["GOC:mtg_pamgo_17jul06"],"gene_count":0,"genotype_count":0,"name":"obsolete chemotaxis in environment of other organism involved in symbiotic interaction (obsolete GO:0052216)","synonyms":[{"name":"chemotaxis in environment of other organism during symbiotic interaction","type":"related"},{"name":"chemotaxis in response to environment of other organism","type":"exact"}],"termid":"GO:0052216"}


id: GO:1990371
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. A response that results in a state of tolerance to phenol.","definition_xrefs":["GOC:mengo_curators","PMID:23356676"],"gene_count":0,"genotype_count":0,"name":"obsolete process resulting in tolerance to phenol (obsolete GO:1990371)","termid":"GO:1990371"}


id: CHEBI:29035
data:
  {"annotation_feature_type":"gene","cv_name":"chebi_ontology","direct_ancestors":[{"relation_name":"is_a","term_name":"chemical entity","termid":"CHEBI:24431"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"manganese(2+)","termid":"CHEBI:29035"}


id: GO:0034692
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A protein complex that comprises three core spliceosomal proteins, designated E, F, and G. Formation of the E.F.G complex is essential but not sufficient for the formation of a stable U1 snRNP complex.","definition_xrefs":["PMID:8641291"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nuclear protein-containing complex","termid":"GO:0140513"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005634"}],"interesting_parent_ids":["GO:0005575","GO:0005634","GO:0032991"],"is_obsolete":false,"name":"E.F.G complex","termid":"GO:0034692"}


id: GO:0009650
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process in which an organism or cell protects itself from ultraviolet radiation (UV), which may also result in resistance to repeated exposure to UV.","definition_xrefs":["GOC:jl","GOC:ml"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to UV","termid":"GO:0009411"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"UV protection","synonyms":[{"name":"UV resistance","type":"related"},{"name":"UV tolerance","type":"related"},{"name":"ultraviolet protection","type":"exact"},{"name":"ultraviolet resistance","type":"related"},{"name":"ultraviolet tolerance","type":"related"}],"termid":"GO:0009650"}


id: PBO:0039902
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ARHGEF4 antisense RNA 1","termid":"PBO:0039902"}


id: GO:0035978
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The modification of histone H2A by the addition of an phosphate group to a serine residue at position 139 of the histone.","definition_xrefs":["PMID:16061642","GOC:yaf"],"gene_count":0,"genotype_count":0,"name":"obsolete histone H2A-S139 phosphorylation (obsolete GO:0035978)","synonyms":[{"name":"histone H2A.x phosphorylation at S139","type":"narrow"}],"termid":"GO:0035978"}


id: GO:0000363
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the first transesterification reaction of U12-type spliceosomal mRNA splicing. The intron branch site adenosine is the nucleophile attacking the 5' splice site, resulting in cleavage at this position. In cis splicing, this is the step that forms a lariat structure of the intron RNA, which is still joined to the 3' exon. The catalytic site is thought to be formed by U6atac snRNA and/or U2atac snRNA, and/or associated proteins.","definition_xrefs":["GOC:krc","ISBN:0879695897"],"gene_count":0,"genotype_count":0,"name":"obsolete first U12-type spliceosomal transesterification activity (obsolete GO:0000363)","synonyms":[{"name":"first U12-type spliceosomal transesterification activity","type":"exact"},{"name":"lariat formation, 5'-splice site cleavage","type":"broad"}],"termid":"GO:0000363"}


id: GO:0019886
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which an antigen-presenting cell expresses a peptide antigen of exogenous origin on its cell surface in association with an MHC class II protein complex. The peptide antigen is typically, but not always, processed from a whole protein.","definition_xrefs":["PMID:15771591","GOC:add","ISBN:0781735149"],"direct_ancestors":[{"relation_name":"is_a","term_name":"antigen processing and presentation of exogenous peptide antigen","termid":"GO:0002478"},{"relation_name":"is_a","term_name":"antigen processing and presentation of peptide antigen via MHC class II","termid":"GO:0002495"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"antigen processing and presentation of exogenous peptide antigen via MHC class II","secondary_identifiers":["GO:0048005","GO:0042591"],"synonyms":[{"name":"antigen presentation, exogenous antigen via MHC class II","type":"broad"},{"name":"antigen presentation, exogenous peptide antigen","type":"broad"},{"name":"antigen processing, exogenous antigen via major histocompatibility complex class II","type":"broad"},{"name":"exogenous peptide antigen processing and presentation via MHC class II","type":"exact"}],"termid":"GO:0019886"}


id: GO:0046073
data:
  {"annotated_genes":["SJAG_04627","SJAG_03771"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[84880,104290],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006231"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways involving dTMP, deoxyribosylthymine monophosphate (2'-deoxyribosylthymine 5'-phosphate).","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pyrimidine deoxyribonucleoside monophosphate metabolic process","termid":"GO:0009176"},{"relation_name":"is_a","term_name":"pyrimidine deoxyribonucleotide metabolic process","termid":"GO:0009219"}],"gene_count":2,"genes_by_uniquename":{"SJAG_03771":null,"SJAG_04627":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0055086"}],"interesting_parent_ids":["GO:0055086","GO:0008150","GO:0044281"],"is_obsolete":false,"name":"dTMP metabolic process","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"dTMP metabolism","type":"exact"}],"termid":"GO:0046073","terms_by_termid":{"GO:0006231":null}}


id: PBO:0055404
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2834","termid":"PBO:0055404"}


id: FYPO:0003121
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which the rate, or speed, of homologous chromosome pairing during meiosis (synapsis) is normal (i.e. indistinguishable from wild type) at a cis-acting homologous chromosome pairing region such as the sme2 locus.","definition_xrefs":["PMID:22582262","PMID:23117617","PMID:24173580","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal homologous chromosome pairing at cis-acting homologous chromosome pairing region","termid":"FYPO:0003051"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000257"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0000257"],"is_obsolete":false,"name":"normal rate of homologous chromosome pairing at cis-acting homologous chromosome pairing region","synonyms":[{"name":"normal rate of homologous chromosome pairing at meiosis at cis-acting homologous chromosome pairing region","type":"exact"},{"name":"normal rate of homologous chromosome pairing at sme2 locus","type":"narrow"},{"name":"normal rate of synapsis at cis-acting homologous chromosome pairing region","type":"exact"}],"termid":"FYPO:0003121"}


id: PBO:0065144
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"prolactin receptor","termid":"PBO:0065144"}


id: FYPO:0002180
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"OBSOLETE. A mixed population phenotype in which cells in the population are viable, some cells are longer than normal, and the rest of the cells are of normal morphology (i.e. size, shape, and structure).","definition_xrefs":["PomBase:jh","PomBase:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete viable mixed vegetative cell population including cell with normal morphology and long cells (obsolete FYPO:0002180)","synonyms":[{"name":"long low penetrance","type":"related"}],"termid":"FYPO:0002180"}


id: MOD:00846
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"stub","definition_xrefs":["PubMed:18688235"],"direct_ancestors":[{"relation_name":"is_a","term_name":"reagent derivatized residue","termid":"MOD:00848"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"levuglandinyl (prostaglandin H2) adduct","termid":"MOD:00846"}


id: PBO:0061261
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"notch 2 N-terminal like R","termid":"PBO:0061261"}


id: SO:0000681
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A transcript that has been processed \\\"incorrectly\\\", for example by the failure of splicing of one or more exons.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"transcript","termid":"SO:0000673"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"aberrant_processed_transcript","synonyms":[{"name":"aberrant processed transcript","type":"exact"}],"termid":"SO:0000681"}


id: PBO:0091090
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"serine/threonine protein kinase Gsk31","termid":"PBO:0091090"}


id: PBO:0077220
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transmembrane BAX inhibitor motif containing 1","termid":"PBO:0077220"}


id: GO:1902275
data:
  {"annotated_genes":["SJAG_02723","SJAG_01599","SJAG_02381","SJAG_02622","SJAG_01867","SJAG_04576","SJAG_01511","SJAG_03255","SJAG_02592","SJAG_04186","SJAG_02342","SJAG_03664","SJAG_03128","SJAG_04369","SJAG_03624","SJAG_02990"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[107232],"is_not":false,"summary":null,"term":"GO:1902275"},{"annotations":[102528,99683,106416],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0061188"},{"annotations":[104403],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0060906"},{"annotations":[99684,106417],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0061186"},{"annotations":[94704],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0031453"},{"annotations":[106282,90002],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0090055"},{"annotations":[86340,94300],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0031445"},{"annotations":[96054,92886],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0090052"},{"annotations":[113841],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0010964"},{"annotations":[114195,96055,92887,100027,87394,113842],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1902801"}]},"cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of chromatin organization.","definition_xrefs":["PMID:18314879","GOC:TermGenie","GO_REF:0000058","GOC:vw","GOC:bf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of cellular component organization","termid":"GO:0051128"},{"relation_name":"regulates","term_name":"chromatin organization","termid":"GO:0006325"}],"gene_count":16,"genes_by_uniquename":{"SJAG_01511":null,"SJAG_01599":null,"SJAG_01867":null,"SJAG_02342":null,"SJAG_02381":null,"SJAG_02592":null,"SJAG_02622":null,"SJAG_02723":null,"SJAG_02990":null,"SJAG_03128":null,"SJAG_03255":null,"SJAG_03624":null,"SJAG_03664":null,"SJAG_04186":null,"SJAG_04369":null,"SJAG_04576":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0006325"}],"interesting_parent_ids":["GO:0006325","GO:0008150"],"is_obsolete":false,"name":"regulation of chromatin organization","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["GO:1903308","GO:0001672"],"synonyms":[{"name":"regulation of chromatin assembly or disassembly","type":"related"},{"name":"regulation of chromatin assembly/disassembly","type":"related"},{"name":"regulation of chromatin modification","type":"related"},{"name":"regulation of chromatin organisation","type":"exact"},{"name":"regulation of establishment or maintenance of chromatin architecture","type":"exact"}],"termid":"GO:1902275","terms_by_termid":{"GO:0010964":null,"GO:0031445":null,"GO:0031453":null,"GO:0060906":null,"GO:0061186":null,"GO:0061188":null,"GO:0090052":null,"GO:0090055":null,"GO:1902275":null,"GO:1902801":null}}


id: GO:1905547
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that modulates the frequency, rate or extent of subtelomeric heterochromatin assembly.","definition_xrefs":["GO_REF:0000058","PMID:25819580","GOC:nc","GOC:BHF","GOC:BHF_telomere","GOC:TermGenie"],"gene_count":0,"genotype_count":0,"name":"obsolete regulation of subtelomeric heterochromatin assembly (obsolete GO:1905547)","synonyms":[{"name":"regulation of telomeric heterochromatin assembly","type":"related"},{"name":"regulation of telomeric heterochromatin formation","type":"related"}],"termid":"GO:1905547"}


id: PBO:0034255
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-lays_eggs_in","termid":"PBO:0034255"}


id: GO:0140291
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The removal of ADP-ribose from ADP-ribosylglutamate.","definition_xrefs":["PMID:23481255"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein de-ADP-ribosylation","termid":"GO:0051725"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"peptidyl-glutamate ADP-deribosylation","termid":"GO:0140291"}


id: GO:0051513
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of monopolar cell growth, polarized growth from one end of a cell.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of unidimensional cell growth","termid":"GO:0051510"},{"relation_name":"regulates","term_name":"monopolar cell growth","termid":"GO:0042814"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of monopolar cell growth","termid":"GO:0051513"}


id: FYPO:0009003
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which karyogamy involved in conjugation with cellular fusion does not occur, despite the nuclei and their SPBs coming together.","definition_xrefs":["PomBase:mlr","PMID:36650056"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abolished nuclear fusion during mating","termid":"FYPO:0000511"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000301"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000002","FYPO:0005447","FYPO:0000301"],"is_obsolete":false,"name":"abolished nuclear fusion with normal nuclear congression during mating","synonyms":[{"name":"nuclear congression without nuclear fusion","type":"exact"}],"termid":"FYPO:0009003"}


id: PBO:0077627
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"thiol methyltransferase 1A pseudogene 1","termid":"PBO:0077627"}


id: PBO:0029374
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abolished_protein_localization_to_medial_cortex_during_vegetative_growth","termid":"PBO:0029374"}


id: PBO:0069000
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 244, pseudogene","termid":"PBO:0069000"}


id: GO:0043495
data:
  {"annotated_genes":["SJAG_01178","SJAG_02215","SJAG_03596","SJAG_01564","SJAG_01258","SJAG_05196","SJAG_03200","SJAG_00029","SJAG_02874","SJAG_00368","SJAG_00700","SJAG_04417","SJAG_02737","SJAG_00185","SJAG_01745","SJAG_03449","SJAG_01456","SJAG_03464","SJAG_03673","SJAG_01305","SJAG_00053","SJAG_01263","SJAG_04077","SJAG_03710","SJAG_01196","SJAG_01143","SJAG_04558","SJAG_02699","SJAG_04315","SJAG_03564","SJAG_03264","SJAG_03416","SJAG_01738","SJAG_04370","SJAG_04930","SJAG_02398","SJAG_00268","SJAG_03851","SJAG_00397","SJAG_04763","SJAG_01437","SJAG_03089","SJAG_03170","SJAG_04479","SJAG_04991","SJAG_04413","SJAG_05226","SJAG_03435"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[85928,90274,91098,91162,93162,97575,98297,99321,100217,100973,101782,101992,102569,102776,104573,105356,106813,106951,109223,110098,113134,114552,114766,115034],"is_not":false,"summary":null,"term":"GO:0043495"},{"annotations":[86874],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0140449"},{"annotations":[88145,108289,102469,110007,113132,98770,102470,98215,102072,107850,98540,113044,108765],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0106006"},{"annotations":[95144],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0140506"},{"annotations":[86878,84573,115618],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0062239"},{"annotations":[84540],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0140580"},{"annotations":[103414,103549,101715,86436],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0140474"},{"annotations":[102471],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0140443"},{"annotations":[108840,85647,98623],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0106166"},{"annotations":[113643,101824],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0140473"}]},"cv_name":"molecular_function","definition":"The binding activity of a molecule that brings together a protein or a protein complex with a membrane, or bringing together two membranes, either via membrane lipid binding or by interacting with a membrane protein, to establish or maintain the localization of the protein, protein complex or organelle.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein-macromolecule adaptor activity","termid":"GO:0030674"}],"gene_count":48,"genes_by_uniquename":{"SJAG_00029":null,"SJAG_00053":null,"SJAG_00185":null,"SJAG_00268":null,"SJAG_00368":null,"SJAG_00397":null,"SJAG_00700":null,"SJAG_01143":null,"SJAG_01178":null,"SJAG_01196":null,"SJAG_01258":null,"SJAG_01263":null,"SJAG_01305":null,"SJAG_01437":null,"SJAG_01456":null,"SJAG_01564":null,"SJAG_01738":null,"SJAG_01745":null,"SJAG_02215":null,"SJAG_02398":null,"SJAG_02699":null,"SJAG_02737":null,"SJAG_02874":null,"SJAG_03089":null,"SJAG_03170":null,"SJAG_03200":null,"SJAG_03264":null,"SJAG_03416":null,"SJAG_03435":null,"SJAG_03449":null,"SJAG_03464":null,"SJAG_03564":null,"SJAG_03596":null,"SJAG_03673":null,"SJAG_03710":null,"SJAG_03851":null,"SJAG_04077":null,"SJAG_04315":null,"SJAG_04370":null,"SJAG_04413":null,"SJAG_04417":null,"SJAG_04479":null,"SJAG_04558":null,"SJAG_04763":null,"SJAG_04930":null,"SJAG_04991":null,"SJAG_05196":null,"SJAG_05226":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0030674"},{"rel_name":"is_a","termid":"GO:0060090"}],"interesting_parent_ids":["GO:0003674","GO:0030674","GO:0060090"],"is_obsolete":false,"name":"protein-membrane adaptor activity","references_by_uniquename":{"GO_REF:0000107":null,"PMID:24184107":null},"synonyms":[{"name":"anchoring","type":"related"},{"name":"membrane-membrane adaptor activity","type":"narrow"},{"name":"protein membrane adaptor","type":"exact"},{"name":"protein membrane adaptor activity","type":"exact"},{"name":"protein membrane anchor","type":"related"}],"termid":"GO:0043495","terms_by_termid":{"GO:0043495":null,"GO:0062239":null,"GO:0106006":null,"GO:0106166":null,"GO:0140443":null,"GO:0140449":null,"GO:0140473":null,"GO:0140474":null,"GO:0140506":null,"GO:0140580":null}}


id: GO:0014043
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of neuron maturation.","definition_xrefs":["GOC:ef"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of neuron maturation","termid":"GO:0014041"},{"relation_name":"is_a","term_name":"negative regulation of cell maturation","termid":"GO:1903430"},{"relation_name":"negatively_regulates","term_name":"neuron maturation","termid":"GO:0042551"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of neuron maturation","synonyms":[{"name":"down regulation of neuron maturation","type":"exact"},{"name":"down-regulation of neuron maturation","type":"exact"},{"name":"downregulation of neuron maturation","type":"exact"},{"name":"inhibition of neuron maturation","type":"narrow"}],"termid":"GO:0014043"}


id: PBO:0069107
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 355, pseudogene","termid":"PBO:0069107"}


id: PR:Q1RKN3
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- tlh2 gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q1RKN3"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ATP-dependent DNA helicase tlh2 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBCPT2R1.08c","synonyms":[{"name":"Spom972h-tlh2","type":"exact"},{"name":"Sub-telomeric helicase RecQ homolog 2 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:Q1RKN3"}


id: PBO:0004762
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"autophagy associated protein Atg3","termid":"PBO:0004762"}


id: GO:0035802
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process that gives rise to the adrenal cortex. This process pertains to the initial formation of a structure from unspecified parts. The adrenogonadal primordium from which the adrenal cortex is formed derives from a condensation of coelomic epithelial cells (the urogenital ridge; the same structure from which gonads and kidney also originate).","definition_xrefs":["PMID:12185666","PMID:21115154"],"direct_ancestors":[{"relation_name":"is_a","term_name":"anatomical structure formation involved in morphogenesis","termid":"GO:0048646"},{"relation_name":"part_of","term_name":"adrenal cortex development","termid":"GO:0035801"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"adrenal cortex formation","synonyms":[{"name":"adrenal gland cortex formation","type":"exact"}],"termid":"GO:0035802"}


id: PBO:0080173
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"voltage dependent anion channel 1 pseudogene 8","termid":"PBO:0080173"}


id: GO:0071774
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a fibroblast growth factor stimulus.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to growth factor","termid":"GO:0070848"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"response to fibroblast growth factor","synonyms":[{"name":"response to FGF stimulus","type":"exact"},{"name":"response to fibroblast growth factor stimulus","type":"exact"}],"termid":"GO:0071774"}


id: PBO:0055187
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2611","termid":"PBO:0055187"}


id: PBO:0070756
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L10 pseudogene 12","termid":"PBO:0070756"}


id: GO:0090216
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that increases the frequency, rate or extent of the catalysis of the reaction: ATP + 1-phosphatidyl-1D-myo-inositol 4-phosphate = ADP + 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate.","definition_xrefs":["GOC:tb","GOC:dph"],"gene_count":0,"genotype_count":0,"name":"obsolete positive regulation of 1-phosphatidylinositol-4-phosphate 5-kinase activity (obsolete GO:0090216)","termid":"GO:0090216"}


id: PBO:0000517
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase family or domain","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CLK/STY/LAMMEr subfamily","termid":"PBO:0000517"}


id: PBO:0083632
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"EH domain-containing protein involved in endocytosis; actin cytoskeletal organization and cell wall morphogenesis; forms a complex with Sla1p and Pan1p","termid":"PBO:0083632"}


id: PBO:0042171
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cellular communication network factor 2","termid":"PBO:0042171"}


id: GO:0035256
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a G protein-coupled glutamate receptor (a metabotropic glutamate receptor).","definition_xrefs":["PMID:9069287","GOC:bf","ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"G protein-coupled receptor binding","termid":"GO:0001664"},{"relation_name":"is_a","term_name":"glutamate receptor binding","termid":"GO:0035254"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005515"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005488"}],"interesting_parent_ids":["GO:0003674","GO:0005488","GO:0005515"],"is_obsolete":false,"name":"G protein-coupled glutamate receptor binding","synonyms":[{"name":"G-protein coupled glutamate receptor binding","type":"exact"},{"name":"metabotropic glutamate receptor binding","type":"exact"}],"termid":"GO:0035256"}


id: MOD:00081
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-glutamic acid residue to L-glutamate 5-methyl ester.","definition_xrefs":["OMSSA:17","OMSSA:70","PubMed:6300110","RESID:AA0072#GLU","PubMed:16888","Unimod:34#E","DeltaMass:167"],"direct_ancestors":[{"relation_name":"is_a","term_name":"L-glutamic acid 5-methyl ester","termid":"MOD:01453"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:00427"}],"interesting_parent_ids":["MOD:00427"],"is_obsolete":false,"name":"L-glutamic acid 5-methyl ester (Glu)","synonyms":[{"name":"(2S)-2-amino-5-methoxy-5-oxopentanoic acid","type":"exact"},{"name":"(5)-methyl L-hydrogen glutamate","type":"exact"},{"name":"2-aminopentanedioic acid 5-methyl ester","type":"exact"},{"name":"5-methyl L-2-aminoglutarate","type":"exact"},{"name":"5-methyl L-glutamate","type":"exact"},{"name":"5-methyl esterified L-glutamic acid","type":"exact"},{"name":"L-glutamic acid 5-methyl ester","type":"exact"},{"name":"MOD_RES Glutamate methyl ester (Glu)","type":"exact"},{"name":"Methyl","type":"related"},{"name":"Methylation","type":"related"},{"name":"O-methyl Glutamyl","type":"exact"},{"name":"O5MeGlu","type":"exact"},{"name":"glutamic acid 5-methyl ester","type":"exact"},{"name":"glutamic acid gamma-methyl ester","type":"exact"},{"name":"meestere","type":"exact"},{"name":"methyl ester","type":"related"},{"name":"methyle","type":"exact"}],"termid":"MOD:00081"}


id: PBO:0076139
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"succinate-CoA ligase GDP/ADP-forming subunit alpha","termid":"PBO:0076139"}


id: PBO:0050139
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"high mobility group box 1 pseudogene 49","termid":"PBO:0050139"}


id: PBO:0089261
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial and cytoplasmic alanine-tRNA ligase Ala1","termid":"PBO:0089261"}


id: PR:Q8TFH5
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPAPB17E12.09 gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q8TFH5"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"meiotically up-regulated protein PB17E12.09 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAPB17E12.09","synonyms":[{"name":"Spom972h-SPAPB17E12.09","type":"exact"}],"termid":"PR:Q8TFH5"}


id: PBO:0056414
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MARCHF10 divergent transcript","termid":"PBO:0056414"}


id: GO:0033204
data:
  {"annotated_genes":["SJAG_03796","SJAG_01623"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[100393,114685],"is_not":false,"summary":null,"term":"GO:0033204"}]},"cv_name":"molecular_function","definition":"Binding to RNA subunit of ribonuclease P.","definition_xrefs":["PMID:11455963","GOC:pg"],"direct_ancestors":[{"relation_name":"is_a","term_name":"RNA binding","termid":"GO:0003723"}],"gene_count":2,"genes_by_uniquename":{"SJAG_01623":null,"SJAG_03796":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003723"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0003723","GO:0005488"],"is_obsolete":false,"name":"ribonuclease P RNA binding","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"RNase P RNA binding","type":"exact"}],"termid":"GO:0033204","terms_by_termid":{"GO:0033204":null}}


id: PBO:0060941
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nuclear factor, erythroid 2 like 3 pseudogene 1","termid":"PBO:0060941"}


id: FYPO:0003218
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the modification of a wobble base uridine residue in a tRNA to 5-methoxycarbonylmethyl-2-thiouridine is abolished.","definition_xrefs":["GO:0002926","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abolished RNA modification","termid":"FYPO:0000371"},{"relation_name":"is_a","term_name":"abnormal tRNA modification","termid":"FYPO:0001765"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000294"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0006551"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0006551","FYPO:0000002","FYPO:0005447","FYPO:0001985","FYPO:0000294"],"is_obsolete":false,"name":"abolished tRNA wobble base 5-methoxycarbonylmethyl-2-thiouridine biosynthesis","synonyms":[{"name":"abolished mcm5s2U34 biosynthesis","type":"exact"},{"name":"abolished tRNA U34 5-methoxycarbonylmethyl-2-thiouridine biosynthesis","type":"exact"},{"name":"abolished tRNA wobble base 5-methoxycarbonylmethyl-2-thiouridine biosynthesis during mitotic cell cycle","type":"related"},{"name":"abolished tRNA wobble base 5-methoxycarbonylmethyl-2-thiouridine biosynthesis during vegetative growth","type":"exact"},{"name":"abolished thiolation and methoxycarbonylmethylation at tRNA U34","type":"exact"},{"name":"tRNA wobble base 5-methoxycarbonylmethyl-2-thiouridine biosynthesis abolished","type":"exact"}],"termid":"FYPO:0003218"}


id: GO:0034175
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate, or extent of toll-like receptor 12 signaling pathway.","definition_xrefs":["GOC:add","PMID:17328678","PMID:16551253"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of cytoplasmic pattern recognition receptor signaling pathway","termid":"GO:0039531"},{"relation_name":"regulates","term_name":"toll-like receptor 12 signaling pathway","termid":"GO:0034174"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"regulation of toll-like receptor 12 signaling pathway","synonyms":[{"name":"regulation of TLR12 signaling pathway","type":"exact"},{"name":"regulation of toll-like receptor 12 signalling pathway","type":"exact"}],"termid":"GO:0034175"}


id: PBO:0072387
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RPS27A pseudogene 13","termid":"PBO:0072387"}


id: PBO:0057744
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 1539","termid":"PBO:0057744"}


id: PR:O13282
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A transcription initiation factor TFIID subunit 5 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO04393","PANTHER:PTHR19879:SF0","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transcription initiation factor TFIID subunit 5 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC5E4.03c","secondary_identifiers":["UniProtKB:O13282"],"synonyms":[{"name":"Spom972h-TAF5","type":"exact"},{"name":"TAFII-72 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"transcription initiation factor TFIID 72 kDa subunit (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:O13282"}


id: GO:0010236
data:
  {"annotated_genes":["SJAG_04568"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[109792],"is_not":false,"summary":null,"term":"GO:0010236"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of plastoquinone, a lipid-soluble electron-transporting coenzyme present in the chloroplast.","definition_xrefs":["GOC:sm"],"direct_ancestors":[{"relation_name":"is_a","term_name":"quinone biosynthetic process","termid":"GO:1901663"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04568":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0044281","GO:0008150"],"is_obsolete":false,"name":"plastoquinone biosynthetic process","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["MetaCyc:PWY-1581"],"synonyms":[{"name":"plastoquinone anabolism","type":"exact"},{"name":"plastoquinone biosynthesis","type":"exact"},{"name":"plastoquinone formation","type":"exact"},{"name":"plastoquinone synthesis","type":"exact"}],"termid":"GO:0010236","terms_by_termid":{"GO:0010236":null}}


id: GO:0005208
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. (Was not defined before being made obsolete).","definition_xrefs":["GOC:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete amyloid protein (obsolete GO:0005208)","synonyms":[{"name":"amyloid protein","type":"exact"}],"termid":"GO:0005208"}


id: PBO:0059871
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"myotubularin related protein 9","termid":"PBO:0059871"}


id: GO:0102655
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 1-18:1-2-trans-16:1-phosphatidylglycerol + O2 + a reduced electron acceptor = 1-18:2-2-trans-16:1-phosphatidylglycerol + 2 H2O + an oxidized electron acceptor.","definition_xrefs":["GOC:pz"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water","termid":"GO:0016717"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016491"],"is_obsolete":false,"name":"1-18:1-2-trans-16:1-phosphatidylglycerol desaturase activity","secondary_identifiers":["MetaCyc:RXN-1726","EC:1.14.19.23"],"termid":"GO:0102655"}


id: GO:0090725
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The non-central region or periphery of the migrating motile tip of a growing nerve cell axon or dendrite.","definition_xrefs":["PMID:16260607","GOC:sl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular anatomical entity","termid":"GO:0110165"},{"relation_name":"part_of","term_name":"growth cone","termid":"GO:0030426"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"peripheral region of growth cone","termid":"GO:0090725"}


id: PBO:0036174
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_glutamate_dehydrogenase_(NADP+)_activity_during_cellular_response_to_iron_ion_starvation","termid":"PBO:0036174"}


id: GO:0021514
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which neuroepithelial cells in the neural tube acquire specialized structural and/or functional features of ventral spinal cord interneurons. Ventral spinal cord interneurons are cells located in the ventral portion of the spinal cord that transmit signals between sensory and motor neurons and are required for reflexive responses. Differentiation includes the processes involved in commitment of a cell to a specific fate.","definition_xrefs":["GOC:cls","GOC:dph","GO_REF:0000021","GOC:jid","PMID:11262869","GOC:dgh"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell differentiation in spinal cord","termid":"GO:0021515"},{"relation_name":"is_a","term_name":"central nervous system neuron differentiation","termid":"GO:0021953"},{"relation_name":"part_of","term_name":"ventral spinal cord development","termid":"GO:0021517"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"ventral spinal cord interneuron differentiation","termid":"GO:0021514"}


id: RO:0002103
data:
  {"annotation_feature_type":"gene","cv_name":"relationship","definition":"Relation between an anatomical structure (including cells) and a neuron that chemically synapses to it. ","direct_ancestors":[{"relation_name":"is_a","term_name":"upstream_in_neural_circuit_with","termid":"RO:0000301"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"synapsed_by","termid":"RO:0002103"}


id: GO:0046451
data:
  {"annotated_genes":["SJAG_00234","SJAG_00881"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[101860,111855],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0009089"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways involving diaminopimelate, the anion of the dicarboxylic acid 2,6-diaminoheptanedioic acid. It is an intermediate in lysine biosynthesis and as a component (as meso-diaminopimelate) of the peptidoglycan of Gram-negative bacterial cell walls.","definition_xrefs":["GOC:ai","ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"dicarboxylic acid metabolic process","termid":"GO:0043648"}],"gene_count":2,"genes_by_uniquename":{"SJAG_00234":null,"SJAG_00881":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0044281"],"is_obsolete":false,"name":"diaminopimelate metabolic process","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"diaminopimelate metabolism","type":"exact"}],"termid":"GO:0046451","terms_by_termid":{"GO:0009089":null}}


id: PBO:0048054
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ferritin heavy chain 1 pseudogene 3","termid":"PBO:0048054"}


id: GO:0045522
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to an interleukin-26 receptor.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cytokine receptor binding","termid":"GO:0005126"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0005515"}],"interesting_parent_ids":["GO:0005515","GO:0005488","GO:0003674"],"is_obsolete":false,"name":"interleukin-26 receptor binding","synonyms":[{"name":"IL-26","type":"narrow"},{"name":"interleukin-26 receptor ligand","type":"narrow"}],"termid":"GO:0045522"}


id: PR:P48003
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- pht1 gene.","definition_xrefs":["PRO:DNx","UniProtKB:P48003"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"histone H2A.Z (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC11B10.10c","synonyms":[{"name":"Spom972h-pht1","type":"exact"}],"termid":"PR:P48003"}


id: PBO:0075223
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sorting nexin 2","termid":"PBO:0075223"}


id: PBO:0086897
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Putative transporter; member of the sugar porter family; YFL040W is not an essential gene; may have a role in intracellular sterol transport","termid":"PBO:0086897"}


id: GO:0045753
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways resulting in the breakdown of acetate.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of cellular catabolic process","termid":"GO:0031330"},{"relation_name":"is_a","term_name":"regulation of acetate catabolic process","termid":"GO:0045734"},{"relation_name":"is_a","term_name":"negative regulation of small molecule metabolic process","termid":"GO:0062014"},{"relation_name":"negatively_regulates","term_name":"acetate catabolic process","termid":"GO:0045733"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0044248"},{"rel_name":"negatively_regulates","termid":"GO:0044281"},{"rel_name":"regulates","termid":"GO:0044281"},{"rel_name":"negatively_regulates","termid":"GO:0044248"}],"interesting_parent_ids":["GO:0008150","GO:0044281","GO:0044248"],"is_obsolete":false,"name":"negative regulation of acetate catabolic process","synonyms":[{"name":"down regulation of acetate catabolic process","type":"exact"},{"name":"down-regulation of acetate catabolic process","type":"exact"},{"name":"downregulation of acetate catabolic process","type":"exact"},{"name":"inhibition of acetate catabolic process","type":"narrow"},{"name":"negative regulation of acetate breakdown","type":"exact"},{"name":"negative regulation of acetate catabolism","type":"exact"},{"name":"negative regulation of acetate degradation","type":"exact"}],"termid":"GO:0045753"}


id: FYPO:0005043
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A gene expression phenotype observed in the vegetative growth phase of the life cycle in which regulation of translation in response to ultraviolet light is abnormal.","definition_xrefs":["PomBase:mah","PMID:17369398"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular response phenotype during vegetative growth","termid":"FYPO:0001342"},{"relation_name":"is_a","term_name":"abnormal cellular process during vegetative growth","termid":"FYPO:0001362"},{"relation_name":"is_a","term_name":"translation regulation phenotype during vegetative growth","termid":"FYPO:0005044"},{"relation_name":"is_a","term_name":"abnormal gene expression","termid":"FYPO:0006551"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0006551"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000298"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0001985","FYPO:0001320","FYPO:0006551","FYPO:0000298","FYPO:0000002"],"is_obsolete":false,"name":"abnormal regulation of translation in response to UV","synonyms":[{"name":"abnormal regulation of translation in response to UV during mitotic cell cycle","type":"related"},{"name":"abnormal regulation of translation in response to UV during vegetative growth","type":"exact"},{"name":"abnormal regulation of translation in response to ultraviolet light","type":"exact"}],"termid":"FYPO:0005043"}


id: PBO:0040989
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"BOLA2-SMG1P6 readthrough","termid":"PBO:0040989"}


id: GO:0090037
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that increases the frequency, rate, or extent of a series of reactions, mediated by the intracellular serine/threonine kinase protein kinase C, which occurs as a result of a single trigger reaction or compound.","definition_xrefs":["GOC:tb","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of protein kinase C signaling","termid":"GO:0090036"},{"relation_name":"is_a","term_name":"positive regulation of intracellular signal transduction","termid":"GO:1902533"},{"relation_name":"positively_regulates","term_name":"protein kinase C signaling","termid":"GO:0070528"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0023052"},{"rel_name":"positively_regulates","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"positive regulation of protein kinase C signaling","synonyms":[{"name":"positive regulation of protein kinase C signaling cascade","type":"related"},{"name":"positive regulation of protein kinase C signalling cascade","type":"exact"}],"termid":"GO:0090037"}


id: GO:0102795
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 1-naphthaldehyde + O2 + H2O = H+ + 1-naphthoate + hydrogen peroxide.","definition_xrefs":["EC:1.2.3.9","GOC:pz"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the aldehyde or oxo group of donors, oxygen as acceptor","termid":"GO:0016623"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0016491","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"1-naphthaldehyde:oxygen oxidoreductase activity","secondary_identifiers":["MetaCyc:RXN-8090"],"termid":"GO:0102795"}


id: PR:000050482
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the sid2 gene in Schizosaccharomyces pombe.","definition_xrefs":["PRO:DAN"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein","termid":"PR:000000001"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"serine/threonine-protein kinase sid2 (Schizosaccharomyces pombe)","pombase_gene_id":"SPAC24B11.11c","synonyms":[{"name":"SPAC24B11.11c","type":"related"},{"name":"Spom-sid2","type":"exact"},{"name":"sid2","type":"related"}],"termid":"PR:000050482"}


id: GO:0090633
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: CTP + KDN = diphosphate + CMP-KDN.","definition_xrefs":["ISBN:978-1-60805-067-3","PMID:8381411","PMID:11479279"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cytidylyltransferase activity","termid":"GO:0070567"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0016779"}],"interesting_parent_ids":["GO:0003824","GO:0016740","GO:0003674","GO:0016779"],"is_obsolete":false,"name":"keto-deoxynonulosonic acid (KDN) cytidylyltransferase activity","synonyms":[{"name":"CMP-KDN synthetase activity","type":"exact"},{"name":"cytidine 5'-monophospho-2-Keto-3-deoxy-D-glycero-D-galacto-nononic acid synthetase activity","type":"exact"}],"termid":"GO:0090633"}


id: GO:0090405
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A cell projection part that is a branch of a unicellular trichome.","definition_xrefs":["GOC:tb","PO:0025537"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular anatomical entity","termid":"GO:0110165"},{"relation_name":"part_of","term_name":"cell projection","termid":"GO:0042995"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"unicellular trichome branch","termid":"GO:0090405"}


id: PBO:0064808
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protein phosphatase 1 regulatory inhibitor subunit 2","termid":"PBO:0064808"}


id: GO:0051893
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of focal adhesion formation, the establishment and maturation of focal adhesions.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of cell-matrix adhesion","termid":"GO:0001952"},{"relation_name":"is_a","term_name":"regulation of cell-substrate junction assembly","termid":"GO:0090109"},{"relation_name":"regulates","term_name":"focal adhesion assembly","termid":"GO:0048041"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0007155"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0044085"}],"interesting_parent_ids":["GO:0044085","GO:0007155","GO:0008150"],"is_obsolete":false,"name":"regulation of focal adhesion assembly","synonyms":[{"name":"regulation of adhesion plaque assembly","type":"related"}],"termid":"GO:0051893"}


id: GO:1904027
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of collagen fibril organization.","definition_xrefs":["GOC:TermGenie","PMID:25451920","GO_REF:0000058"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of supramolecular fiber organization","termid":"GO:1902904"},{"relation_name":"is_a","term_name":"negative regulation of extracellular matrix organization","termid":"GO:1903054"},{"relation_name":"is_a","term_name":"regulation of collagen fibril organization","termid":"GO:1904026"},{"relation_name":"negatively_regulates","term_name":"collagen fibril organization","termid":"GO:0030199"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of collagen fibril organization","synonyms":[{"name":"down regulation of collagen fibril organisation","type":"exact"},{"name":"down regulation of collagen fibril organization","type":"exact"},{"name":"down regulation of fibrillar collagen organization","type":"exact"},{"name":"down-regulation of collagen fibril organisation","type":"exact"},{"name":"down-regulation of collagen fibril organization","type":"exact"},{"name":"down-regulation of fibrillar collagen organization","type":"exact"},{"name":"downregulation of collagen fibril organisation","type":"exact"},{"name":"downregulation of collagen fibril organization","type":"exact"},{"name":"downregulation of fibrillar collagen organization","type":"exact"},{"name":"inhibition of collagen fibril organisation","type":"narrow"},{"name":"inhibition of collagen fibril organization","type":"narrow"},{"name":"inhibition of fibrillar collagen organization","type":"narrow"},{"name":"negative regulation of collagen fibril organisation","type":"exact"},{"name":"negative regulation of fibrillar collagen organization","type":"exact"}],"termid":"GO:1904027"}


id: PBO:0041711
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"calmodulin like 3","termid":"PBO:0041711"}


id: GO:0021644
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which the anatomical structure of the vagus nerve is generated and organized. This nerve is primarily sensory but also has visceromotor components. It originates in the brain stem and controls many autonomic functions of the heart, lungs, stomach, pharynx, larynx, trachea, esophagus and other gastrointestinal tract components. It controls some motor functions such as speech. The sensory branches mediate sensation from the pharynx, larynx, thorax and abdomen; it also innervates taste buds in the epiglottis.","definition_xrefs":["ISBN:0838580343","GOC:dph","GO_REF:0000021","GOC:cls","GOC:dgh","GOC:jid"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cranial nerve morphogenesis","termid":"GO:0021602"},{"relation_name":"part_of","term_name":"vagus nerve development","termid":"GO:0021564"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"vagus nerve morphogenesis","synonyms":[{"name":"CN X morphogenesis","type":"related"}],"termid":"GO:0021644"}


id: GO:0015363
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. (Was not defined before being made obsolete).","definition_xrefs":["GOC:ai"],"gene_count":0,"genotype_count":0,"name":"obsolete dicarboxylate (succinate/fumarate/malate) antiporter activity (obsolete GO:0015363)","synonyms":[{"name":"dicarboxylate (succinate/fumarate/malate) antiporter activity","type":"exact"}],"termid":"GO:0015363"}


id: PBO:0083259
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Dubious open reading frame; unlikely to encode a functional protein, based on available experimental and comparative sequence data; may be part of a bicistronic transcript with NKP2/YLR315W; overlaps the verified ORF TAD3/YLR316C","termid":"PBO:0083259"}


id: PBO:0067696
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 5.8S ribosomal pseudogene 4","termid":"PBO:0067696"}


id: PBO:0030748
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-altered_level_of_substance_in_cell","termid":"PBO:0030748"}


id: GO:1990649
data:
  {"annotated_genes":["SJAG_00063"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[104208],"is_not":false,"summary":null,"term":"GO:1990649"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: 1D-myo-inositol 1,2,4,5-tetrakisphosphate + H2O = 1D-myo-inositol 1,2,4-trisphosphate + phosphate.","definition_xrefs":["PMID:15316017","GOC:al"],"direct_ancestors":[{"relation_name":"is_a","term_name":"inositol tetrakisphosphate phosphatase activity","termid":"GO:0052743"}],"gene_count":1,"genes_by_uniquename":{"SJAG_00063":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016788"},{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016787","GO:0003824","GO:0003674","GO:0016788"],"is_obsolete":false,"name":"inositol-1,2,4,5-tetrakisphosphate 5-phosphatase activity","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:1990649","terms_by_termid":{"GO:1990649":null}}


id: PBO:0055495
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2929","termid":"PBO:0055495"}


id: GO:0034154
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The series of molecular signals initiated by a ligand binding to the endolysosomal toll-like receptor 7.","definition_xrefs":["GOC:add","PMID:16551253","PMID:17328678"],"direct_ancestors":[{"relation_name":"is_a","term_name":"endolysosomal toll-like receptor signaling pathway","termid":"GO:0140894"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"toll-like receptor 7 signaling pathway","synonyms":[{"name":"TLR7 signaling pathway","type":"exact"},{"name":"toll-like receptor 7 signalling pathway","type":"exact"}],"termid":"GO:0034154"}


id: FYECO:0000195
data:
  {"annotation_feature_type":"gene","cv_name":"fission_yeast_phenotype_condition","definition":"An experimental condition in which dethiobiotin was added to the medium or assay buffers in a limiting quantity compared to standard medium or assay buffers.","definition_xrefs":["PomBase:al"],"direct_ancestors":[{"relation_name":"is_a","term_name":"grouping limited","termid":"FYECO:0000011"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"+ limited dethiobiotin","synonyms":[{"name":"limited desthiobiotin added","type":"exact"}],"termid":"FYECO:0000195"}


id: FYPO:0000654
data:
  {"alleles_by_uniquename":{"SJAG_01458:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_01458","name":"acb1delta","uniquename":"SJAG_01458:allele-1"},"SJAG_02796:allele-1":{"allele_type":"amino_acid_mutation","description":"A343T","gene_uniquename":"SJAG_02796","name":"pyk1-A343T","uniquename":"SJAG_02796:allele-1"}},"annotation_feature_type":"genotype","cv_annotations":{"single_locus_phenotype":[{"annotations":[115199],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0007363"},{"annotations":[115392],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0000719"}]},"cv_name":"fission_yeast_phenotype","definition":"A phenotype that affects a catalytic activity.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"molecular function phenotype","termid":"FYPO:0000652"}],"gene_count":2,"genes_by_uniquename":{"SJAG_01458":null,"SJAG_02796":null},"genotype_count":2,"genotypes_by_uniquename":{"acb1delta":{"display_name":"acb1delta","display_uniquename":"acb1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01458:allele-1","expression":"Null"}]}]},"pyk1-A343T-A343T-amino_acid_mutation-expression-not_assayed_or_wild_type":{"display_name":"pyk1-A343T(aa)","display_uniquename":"pyk1-A343T-A343T-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_02796:allele-1","expression":"Not assayed or wild type"}]}]}},"in_subsets":["fypo_slim"],"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000652"}],"interesting_parent_ids":["FYPO:0000652"],"is_obsolete":false,"name":"catalytic activity phenotype","references_by_uniquename":{"PMID:31956022":null,"PMID:37164017":null},"single_locus_annotated_genes":["SJAG_01458","SJAG_02796"],"single_locus_genotype_uniquenames":["pyk1-A343T-A343T-amino_acid_mutation-expression-not_assayed_or_wild_type","acb1delta"],"synonyms":[{"name":"enzymatic activity phenotype","type":"exact"},{"name":"fission yeast catalytic activity phenotype","type":"exact"}],"termid":"FYPO:0000654","terms_by_termid":{"FYECO:0000005":null,"FYECO:0000126":null,"FYPO:0000719":null,"FYPO:0007363":null,"FYPO_EXT:0000002":null}}


id: GO:0021975
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Generation of a long process of a CNS neuron, that carries efferent (outgoing) action potentials from the cell body in the pons towards target cells in the spinal cord.","definition_xrefs":["GOC:jid","GO_REF:0000021","GOC:cls","GOC:dgh","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"central nervous system projection neuron axonogenesis","termid":"GO:0021952"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"pons reticulospinal tract morphogenesis","termid":"GO:0021975"}


id: PBO:0046418
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"EPH receptor A3","termid":"PBO:0046418"}


id: GO:0001083
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Binding to a basal RNA polymerase II transcription factor, which may be a single protein or a complex, in order to modulate transcription. A protein binding transcription factor may or may not also interact with the template nucleic acid (either DNA or RNA) as well.","definition_xrefs":["GOC:txnOH"],"gene_count":0,"genotype_count":0,"name":"obsolete transcription factor activity, RNA polymerase II basal transcription factor binding (obsolete GO:0001083)","synonyms":[{"name":"RNA polymerase II basal transcription factor binding transcription factor activity","type":"exact"}],"termid":"GO:0001083"}


id: GO:0045869
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of single stranded viral RNA replication via double stranded DNA intermediate.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of viral genome replication","termid":"GO:0045071"},{"relation_name":"is_a","term_name":"regulation of single stranded viral RNA replication via double stranded DNA intermediate","termid":"GO:0045091"},{"relation_name":"is_a","term_name":"negative regulation of RNA biosynthetic process","termid":"GO:1902679"},{"relation_name":"negatively_regulates","term_name":"single stranded viral RNA replication via double stranded DNA intermediate","termid":"GO:0039692"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of single stranded viral RNA replication via double stranded DNA intermediate","synonyms":[{"name":"down regulation of retroviral genome replication","type":"exact"},{"name":"down-regulation of retroviral genome replication","type":"exact"},{"name":"downregulation of retroviral genome replication","type":"exact"},{"name":"inhibition of retroviral genome replication","type":"narrow"},{"name":"negative regulation of retroviral genome replication","type":"exact"},{"name":"regulation of retroviral genome replication","type":"related"}],"termid":"GO:0045869"}


id: PBO:0056490
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MYC associated zinc finger protein","termid":"PBO:0056490"}


id: PBO:0064496
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"POLR1H antisense, pseudogene","termid":"PBO:0064496"}


id: PBO:0017601
data:
  {"annotation_feature_type":"gene","cv_name":"name_description","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"OxySterol binding protein Homolog","termid":"PBO:0017601"}


id: GO:0097358
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: D-leucyl-tRNA(Leu) = D-leucine + tRNA(Leu). Hydrolysis of the removal of D-leucine from residues in charged tRNA(Leu).","definition_xrefs":["PMID:10918062","GOC:se"],"direct_ancestors":[{"relation_name":"is_a","term_name":"D-aminoacyl-tRNA deacylase activity","termid":"GO:0051499"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0140101"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016788"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0140098"}],"interesting_parent_ids":["GO:0140098","GO:0003674","GO:0016788","GO:0003824","GO:0140101","GO:0016787"],"is_obsolete":false,"name":"D-leucyl-tRNA(Leu) deacylase activity","termid":"GO:0097358"}


id: PBO:0003200
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"homocysteine synthase Met17","termid":"PBO:0003200"}


id: GO:0070450
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A protein complex that is formed by the association of a heterodimeric interleukin-4 receptor complex with an interleukin-4 molecule.","definition_xrefs":["PMID:10358772","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"plasma membrane protein complex","termid":"GO:0098797"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005886"},{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0032991","GO:0005575","GO:0005886"],"is_obsolete":false,"name":"interleukin4-interleukin-4 receptor complex","synonyms":[{"name":"IL4-IL4 receptor complex","type":"exact"},{"name":"IL4-IL4R-IL2RG complex","type":"narrow"}],"termid":"GO:0070450"}


id: GO:0034954
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: diphenyl ether + O2 = 2,3-dihydroxydiphenyl ether.","definition_xrefs":["UM-BBD_reactionID:r1450"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of two atoms of oxygen into one donor","termid":"GO:0016708"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0016491","GO:0003824"],"is_obsolete":false,"name":"diphenyl ether 2,3-dioxygenase activity","secondary_identifiers":["EC:1.14.12.-"],"termid":"GO:0034954"}


id: GO:0047345
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: D-ribose 5-phosphate + ADP + H+ = ADP-ribose + phosphate.","definition_xrefs":["EC:2.7.7.35","RHEA:14529"],"direct_ancestors":[{"relation_name":"is_a","term_name":"adenylyltransferase activity","termid":"GO:0070566"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0016779"}],"interesting_parent_ids":["GO:0016740","GO:0003674","GO:0016779","GO:0003824"],"is_obsolete":false,"name":"ribose-5-phosphate adenylyltransferase activity","secondary_identifiers":["MetaCyc:2.7.7.35-RXN","KEGG_REACTION:R01052"],"synonyms":[{"name":"ADP ribose phosphorylase activity","type":"related"},{"name":"ADP-ribose phosphorylase activity","type":"related"},{"name":"ADP:D-ribose-5-phosphate adenylyltransferase activity","type":"related"},{"name":"ADP:ribose-5-phosphate adenylyltransferase activity","type":"exact"},{"name":"adenosine diphosphoribose phosphorylase activity","type":"related"}],"termid":"GO:0047345"}


id: PBO:0041623
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"calcium binding tyrosine phosphorylation regulated","termid":"PBO:0041623"}


id: PBO:0043126
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"calcium and integrin binding family member 4","termid":"PBO:0043126"}


id: PBO:0089849
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"40S ribosomal protein S18","termid":"PBO:0089849"}


id: MOD:01538
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively replaces the O4'-hydrogen atom of a tyrosine residue with the Applied Biosystems iTRAQ8plex-114 reporter+balance group.","definition_xrefs":["Unimod:730#Y"],"direct_ancestors":[{"relation_name":"is_a","term_name":"modified L-tyrosine residue","termid":"MOD:00919"},{"relation_name":"is_a","term_name":"iTRAQ8plex-114 reporter+balance reagent acylated residue","termid":"MOD:01535"},{"relation_name":"is_a","term_name":"iTRAQ8plex reporter+balance reagent O-acylated residue","termid":"MOD:01714"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:00649"}],"interesting_parent_ids":["MOD:00649"],"is_obsolete":false,"name":"iTRAQ8plex-114 reporter+balance reagent O4'-acylated tyrosine","synonyms":[{"name":"(4-methylpiperazin-1-yl)acetyl","type":"exact"},{"name":"Applied Biosystems iTRAQ(TM) multiplexed quantitation chemistry","type":"related"},{"name":"Representative mass and accurate mass for 113, 114, 116 & 117","type":"related"},{"name":"iTRAQ8plex","type":"related"},{"name":"iTRAQ8plex:13C(7)15N(1)","type":"related"}],"termid":"MOD:01538"}


id: GO:0038183
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The series of molecular signals initiated by bile acid binding to its receptor, and ending with the regulation of a downstream cellular process, e.g. transcription.","definition_xrefs":["GOC:signaling","GOC:bf","PMID:12016314"],"direct_ancestors":[{"relation_name":"is_a","term_name":"signal transduction","termid":"GO:0007165"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"bile acid signaling pathway","termid":"GO:0038183"}


id: GO:0030940
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a photoperiod, an intermittent cycle of light (day) and dark (night) photoperiod regimes, with the dark phase being longer than the light.","definition_xrefs":["GOC:pj"],"gene_count":0,"genotype_count":0,"name":"obsolete response to short-day photoperiod (obsolete GO:0030940)","synonyms":[{"name":"response to short-day photoperiod","type":"exact"}],"termid":"GO:0030940"}


id: PBO:0072769
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"S100P binding protein","termid":"PBO:0072769"}


id: PBO:0058254
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 4632","termid":"PBO:0058254"}


id: MOD:01704
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-methionine residue to dehydrobutyrine, by neutral loss of methyl sulfide.","definition_xrefs":["PubMed:18688235"],"direct_ancestors":[{"relation_name":"is_a","term_name":"modified L-methionine residue","termid":"MOD:00913"},{"relation_name":"is_a","term_name":"dehydrobutyrine","termid":"MOD:01703"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dehydrobutyrine (Met)","synonyms":[{"name":"dHAbu(Met)","type":"exact"}],"termid":"MOD:01704"}


id: PBO:0041381
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"complement C5a receptor 2","termid":"PBO:0041381"}


id: FYPO:0002148
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A phenotype in which a spore germinates to produce a cell of abnormal morphology (i.e. size, shape, or structure) that undergoes two or more rounds of cell division, and then dies.","definition_xrefs":["PomBase:mah","PomBase:al"],"direct_ancestors":[{"relation_name":"is_a","term_name":"inviable vegetative cell with abnormal cell morphology","termid":"FYPO:0002273"},{"relation_name":"is_a","term_name":"inviable after spore germination, multiple cell divisions","termid":"FYPO:0002430"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000005"},{"rel_name":"has_part","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000004"},{"rel_name":"has_part","termid":"FYPO:0000005"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"has_part","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0001320","FYPO:0000005","FYPO:0000004","FYPO:0000002"],"is_obsolete":false,"name":"inviable after spore germination, multiple cell divisions, abnormal morphology","synonyms":[{"name":"inviable following spore germination, multiple cell divisions, abnormal morphology","type":"exact"},{"name":"inviable germinated spore, multiple cell divisions, abnormal morphology","type":"exact"},{"name":"lethal after spore germination, multiple cell divisions, abnormal morphology","type":"exact"}],"termid":"FYPO:0002148"}


id: PBO:0067782
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 5S ribosomal pseudogene 84","termid":"PBO:0067782"}


id: GO:0050872
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which a relatively unspecialized cell acquires specialized features of a white adipocyte, an animal connective tissue cell involved in energy storage. White adipocytes have cytoplasmic lipids arranged in a unique vacuole.","definition_xrefs":["PMID:12508945"],"direct_ancestors":[{"relation_name":"is_a","term_name":"fat cell differentiation","termid":"GO:0045444"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"white fat cell differentiation","synonyms":[{"name":"white adipocyte cell differentiation","type":"exact"},{"name":"white adipocyte differentiation","type":"exact"}],"termid":"GO:0050872"}


id: PBO:0003664
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"anaphase-promoting complex subunit Apc15","termid":"PBO:0003664"}


id: GO:0016473
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A sodium ion-transporting two-sector ATPase complex that catalyzes the phosphorylation of ADP to ATP. The complex comprises a membrane sector (F0) that carries out proton transport and a cytoplasmic compartment sector (F1) that catalyzes ATP synthesis by a rotational mechanism.","definition_xrefs":["PMID:14656431","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"sodium ion-transporting two-sector ATPase complex","termid":"GO:0016472"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0032991","GO:0005575"],"is_obsolete":false,"name":"sodium ion-transporting F-type ATPase complex","synonyms":[{"name":"sodium-translocating F-type ATPase complex","type":"exact"}],"termid":"GO:0016473"}


id: RO:0002356
data:
  {"annotation_feature_type":"gene","cv_name":"relationship","definition":"The relationship linking a cell and its participation in a process that results in the fate of the cell being specified. Once specification has taken place, a cell will be committed to differentiate down a specific pathway if left in its normal environment. ","direct_ancestors":[{"relation_name":"is_a","term_name":"results_in_developmental_progression_of","termid":"_global:results_in_developmental_progression_of"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"results_in_specification_of","termid":"RO:0002356"}


id: MOD:01510
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively replaces an N'-hydrogen atom of a histidine residue with the Applied Biosystems iTRAQ4plex-117 reporter+balance group.","definition_xrefs":["PubMed:18688235"],"direct_ancestors":[{"relation_name":"is_a","term_name":"modified L-histidine residue","termid":"MOD:00909"},{"relation_name":"is_a","term_name":"iTRAQ4plex-117, mTRAQ heavy, reporter+balance reagent acylated residue","termid":"MOD:01506"},{"relation_name":"is_a","term_name":"iTRAQ4plex reporter+balance reagent N-acylated residue","termid":"MOD:01709"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:00649"}],"interesting_parent_ids":["MOD:00649"],"is_obsolete":false,"name":"iTRAQ4plex-117 reporter+balance reagent N'-acylated histidine","synonyms":[{"name":"(4-methylpiperazin-1-yl)acetyl","type":"exact"},{"name":"iTRAQ4plex","type":"related"}],"termid":"MOD:01510"}


id: PATO:0001752
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A heterochronic growth quality inhering in an organism, structure, or group of organisms by virtue of the bearer's increased growth.","definition_xrefs":["PATOC:mh"],"direct_ancestors":[{"relation_name":"is_a","term_name":"heterochronic growth","termid":"PATO:0001490"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"peramorphic growth","synonyms":[{"name":"hyperplastic growth","type":"exact"}],"termid":"PATO:0001752"}


id: PBO:0005271
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"serine/threonine protein kinase Oca2","termid":"PBO:0005271"}


id: PBO:0031751
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_histone_acetylation","termid":"PBO:0031751"}


id: SO:0000632
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A primary transcript encoding for one gene product.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"has_quality","term_name":"monocistronic","termid":"SO:0000878"},{"relation_name":"is_a","term_name":"primary_transcript","termid":"SO:0000185"},{"relation_name":"is_a","term_name":"monocistronic_transcript","termid":"SO:0000665"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"monocistronic_primary_transcript","synonyms":[{"name":"monocistronic primary transcript","type":"exact"}],"termid":"SO:0000632"}


id: MOD:00667
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively replaces a hydrogen atom with a decanoyl group.","definition_xrefs":["PubMed:18688235"],"direct_ancestors":[{"relation_name":"is_a","term_name":"acylated residue","termid":"MOD:00649"},{"relation_name":"is_a","term_name":"lipoconjugated residue","termid":"MOD:01155"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:00649"}],"interesting_parent_ids":["MOD:00649"],"is_obsolete":false,"name":"decanoylated residue","synonyms":[{"name":"DecRes","type":"exact"}],"termid":"MOD:00667"}


id: PBO:0048451
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glycine C-acetyltransferase","termid":"PBO:0048451"}


id: PR:Q92373
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A replication protein A 32 kDa subunit that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx","PANTHER:PTHR13989:SF7","OMA:SCHPO04720"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"replication factor A protein 2 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC1753.01c","secondary_identifiers":["UniProtKB:Q92373"],"synonyms":[{"name":"Spom972h-RPA2","type":"exact"},{"name":"single-stranded DNA-binding protein P30 subunit (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:Q92373"}


id: PBO:0076432
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TATA-box binding protein associated factor 11 like 8","termid":"PBO:0076432"}


id: GO:0061456
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The orderly movement of a mesenchymal stem cell from one site to another contributing to the shaping of the ureteric bud. A mesenchymal stem cell, or MSC, is a cell that retains the ability to divide and proliferate throughout life to provide progenitor cells that can differentiate into specialized mesenchymal cells.","definition_xrefs":["GOC:dph","GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell migration involved in kidney development","termid":"GO:0035787"},{"relation_name":"part_of","term_name":"ureteric bud morphogenesis","termid":"GO:0060675"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"mesenchymal stem cell migration involved in uteric bud morphogenesis","termid":"GO:0061456"}


id: PBO:0017499
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"plasma membrane nicotinic acid transmembrane transporter (predicted)","termid":"PBO:0017499"}


id: MOD:01850
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively cross-links either two L-cysteine residues, or an L-cysteine residue and an L-serine residue by a thioether bond to form S-(2-aminovinyl)-D-cysteine.","definition_xrefs":["RESID:AA0204"],"direct_ancestors":[{"relation_name":"is_a","term_name":"S-(2-aminovinyl)-cysteine","termid":"MOD:01851"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"S-(2-aminovinyl)-D-cysteine","synonyms":[{"name":"(2S)-2-amino-3-([(Z)-2-aminoethenyl]sulfanyl)propanoic acid","type":"exact"},{"name":"(S,Z)-S-(2-aminovinyl)cysteine","type":"exact"},{"name":"S-(2-aminovinyl)-D-cysteine","type":"exact"}],"termid":"MOD:01850"}


id: PR:O43125
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- lsb1 gene.","definition_xrefs":["UniProtKB:O43125","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protein csh3 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC119.05c","synonyms":[{"name":"Spom972h-lsb1","type":"exact"}],"termid":"PR:O43125"}


id: PBO:0045358
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dipeptidase 2","termid":"PBO:0045358"}


id: GO:0006545
data:
  {"annotated_genes":["SJAG_03914","SJAG_01766","SJAG_02450"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[89829],"is_not":false,"summary":null,"term":"GO:0006545"},{"annotations":[90122,86823],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0019264"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of glycine, aminoethanoic acid.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"glycine metabolic process","termid":"GO:0006544"},{"relation_name":"is_a","term_name":"serine family amino acid biosynthetic process","termid":"GO:0009070"}],"gene_count":3,"genes_by_uniquename":{"SJAG_01766":null,"SJAG_02450":null,"SJAG_03914":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0006520"}],"interesting_parent_ids":["GO:0006520","GO:0044281","GO:0008150"],"is_obsolete":false,"name":"glycine biosynthetic process","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["MetaCyc:GLYCINE-SYN2-PWY"],"synonyms":[{"name":"glycine anabolism","type":"exact"},{"name":"glycine biosynthesis","type":"exact"},{"name":"glycine formation","type":"exact"},{"name":"glycine synthesis","type":"exact"}],"termid":"GO:0006545","terms_by_termid":{"GO:0006545":null,"GO:0019264":null}}


id: PBO:0035890
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_onset_of_actomyosin_contractile_ring_contraction","termid":"PBO:0035890"}


id: GO:0033591
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an L-ascorbic acid (vitamin C) stimulus.","definition_xrefs":["GOC:sl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to organic cyclic compound","termid":"GO:0014070"},{"relation_name":"is_a","term_name":"response to vitamin","termid":"GO:0033273"},{"relation_name":"is_a","term_name":"response to monosaccharide","termid":"GO:0034284"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"response to L-ascorbic acid","synonyms":[{"name":"response to L-ascorbate","type":"exact"},{"name":"response to ascorbic acid","type":"broad"},{"name":"response to vitamin C","type":"exact"}],"termid":"GO:0033591"}


id: GO:0031258
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The portion of the plasma membrane surrounding a lamellipodium.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell projection membrane","termid":"GO:0031253"},{"relation_name":"is_a","term_name":"leading edge membrane","termid":"GO:0031256"},{"relation_name":"part_of","term_name":"lamellipodium","termid":"GO:0030027"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005886"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005886","GO:0005575"],"is_obsolete":false,"name":"lamellipodium membrane","termid":"GO:0031258"}


id: PBO:0084684
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Mitochondrial carrier protein; involved in the accumulation of CoA in the mitochondrial matrix; homolog of human Graves disease protein SLC25A16, which complements yeast null mutant; does not encode an isozyme of Leu4p, as first hypothesized","termid":"PBO:0084684"}


id: PBO:0049710
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"histone H3 associated protein kinase","termid":"PBO:0049710"}


id: PR:000060241
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A nuclear fusion protein tht1 (Schizosaccharomyces pombe) that has been palmitoylated at positions equivalent to Cys-65 and Cys-78 of the amino acid sequence represented by UniProtKB:Q09684. Example: UniProtKB:Q09684, Cys-65/Cys-78, MOD:00047.","definition_xrefs":["PRO:DAN","PMID:36650056","PomBase:MLR"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein","termid":"PR:000000001"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Tht1/Palm-C65C78","pombase_gene_id":"SPAC13C5.03","synonyms":[{"name":"Spom-tht1/Palm:1","type":"exact"},{"name":"Tht1/Palm-C65C78","type":"exact"},{"name":"UniProtKB:Q09684, Cys-65/Cys-78, MOD:00115","type":"narrow"}],"termid":"PR:000060241"}


id: PBO:0060569
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NBPF member 5, pseudogene","termid":"PBO:0060569"}


id: PBO:0029117
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_cell_cycle_process","termid":"PBO:0029117"}


id: PATO:0000441
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A quality of a single process inhering in a bearer by virtue of the bearer's marked by tedious repetition.","definition_xrefs":["thefreedictionary.com:thefreedictionary.com"],"direct_ancestors":[{"relation_name":"is_a","term_name":"occurrence","termid":"PATO:0000057"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"repetitive","termid":"PATO:0000441"}


id: PBO:0049757
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"host cell factor C1","termid":"PBO:0049757"}


id: PBO:0003758
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"prefoldin subunit 1 (predicted)","termid":"PBO:0003758"}


id: PBO:0108955
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"UBA5 pseudogene 1","termid":"PBO:0108955"}


id: PBO:0040285
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ATPase Na+/K+ transporting subunit beta 1","termid":"PBO:0040285"}


id: GO:0072526
data:
  {"annotated_genes":["SJAG_02796","SJAG_00685","SJAG_02945","SJAG_02107","SJAG_01543","SJAG_03828","SJAG_04192","SJAG_04495","SJAG_02135","SJAG_03903","SJAG_00633","SJAG_01310","SJAG_03091","SJAG_05314","SJAG_03373","SJAG_04334","SJAG_06621","SJAG_00027","SJAG_03660","SJAG_06622","SJAG_00839","SJAG_02009","SJAG_02369","SJAG_04048","SJAG_03852","SJAG_00461","SJAG_00605"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[104846,105316,105319,93708,99203,101299,105320,101301,105321,99472,101690,105322,90670,104849,104843,105317,104848,105318,112437,104845,100302,104844,101689,104847,101300,93988,90166],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0061621"},{"annotations":[100305],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006096"},{"annotations":[84095],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0061613"},{"annotations":[93904,107540],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0061688"},{"annotations":[100948],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0019677"},{"annotations":[100950],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006742"},{"annotations":[111062,85191],"is_not":false,"rel_names":["regulates","negatively_regulates"],"summary":null,"term":"GO:0045820"},{"annotations":[96647],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0042820"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of a pyridine-containing compound, i.e. any compound that contains pyridine or a formal derivative thereof.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular nitrogen compound catabolic process","termid":"GO:0044270"},{"relation_name":"is_a","term_name":"heterocycle catabolic process","termid":"GO:0046700"},{"relation_name":"is_a","term_name":"pyridine-containing compound metabolic process","termid":"GO:0072524"},{"relation_name":"is_a","term_name":"organic cyclic compound catabolic process","termid":"GO:1901361"},{"relation_name":"is_a","term_name":"organonitrogen compound catabolic process","termid":"GO:1901565"}],"gene_count":27,"genes_by_uniquename":{"SJAG_00027":null,"SJAG_00461":null,"SJAG_00605":null,"SJAG_00633":null,"SJAG_00685":null,"SJAG_00839":null,"SJAG_01310":null,"SJAG_01543":null,"SJAG_02009":null,"SJAG_02107":null,"SJAG_02135":null,"SJAG_02369":null,"SJAG_02796":null,"SJAG_02945":null,"SJAG_03091":null,"SJAG_03373":null,"SJAG_03660":null,"SJAG_03828":null,"SJAG_03852":null,"SJAG_03903":null,"SJAG_04048":null,"SJAG_04192":null,"SJAG_04334":null,"SJAG_04495":null,"SJAG_05314":null,"SJAG_06621":null,"SJAG_06622":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044248"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0044248"],"is_obsolete":false,"name":"pyridine-containing compound catabolic process","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"pyridine and derivative catabolic process","type":"exact"},{"name":"pyridine-containing compound breakdown","type":"exact"},{"name":"pyridine-containing compound catabolism","type":"exact"},{"name":"pyridine-containing compound degradation","type":"exact"}],"termid":"GO:0072526","terms_by_termid":{"GO:0006096":null,"GO:0006742":null,"GO:0019677":null,"GO:0042820":null,"GO:0045820":null,"GO:0061613":null,"GO:0061621":null,"GO:0061688":null}}


id: MOD:01145
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-histidine residue to N-tau-(ADP-ribosyl)diphthamide.","definition_xrefs":["DeltaMass:0","ChEBI:82697"],"direct_ancestors":[{"relation_name":"derives_from","term_name":"2'-[3-carboxamido-3-(trimethylammonio)propyl]-L-histidine","termid":"MOD:00049"},{"relation_name":"is_a","term_name":"adenosine diphosphoribosyl (ADP-ribosyl) modified residue","termid":"MOD:00752"},{"relation_name":"is_a","term_name":"modified L-histidine residue","termid":"MOD:00909"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"N-tau-(ADP-ribosyl)diphthamide","synonyms":[{"name":"MOD_RES ADP-ribosyldiphthamide","type":"exact"}],"termid":"MOD:01145"}


id: PBO:0045063
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"discs large MAGUK scaffold protein 3","termid":"PBO:0045063"}


id: GO:0008751
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. (Was not defined before being made obsolete).","definition_xrefs":["GOC:jl"],"gene_count":0,"genotype_count":0,"name":"obsolete NAD(P)H dehydrogenase (obsolete GO:0008751)","synonyms":[{"name":"NAD(P)H dehydrogenase","type":"exact"}],"termid":"GO:0008751"}


id: GO:2000137
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of cell proliferation involved in heart morphogenesis.","definition_xrefs":["GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of cell population proliferation","termid":"GO:0008285"},{"relation_name":"is_a","term_name":"regulation of cell proliferation involved in heart morphogenesis","termid":"GO:2000136"},{"relation_name":"negatively_regulates","term_name":"cell proliferation involved in heart morphogenesis","termid":"GO:0061323"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of cell proliferation involved in heart morphogenesis","termid":"GO:2000137"}


id: PBO:0053610
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 644","termid":"PBO:0053610"}


id: PBO:0056401
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MAPT antisense RNA 1","termid":"PBO:0056401"}


id: PR:O43027
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- rga6 gene.","definition_xrefs":["UniProtKB:O43027","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"rho-GTPase-activating protein 6 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC354.13","synonyms":[{"name":"Spom972h-rga6","type":"exact"}],"termid":"PR:O43027"}


id: PBO:0078259
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"T cell receptor beta variable B (pseudogene)","termid":"PBO:0078259"}


id: PBO:0051614
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"interleukin 36 receptor antagonist","termid":"PBO:0051614"}


id: PBO:0053011
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"late endosomal/lysosomal adaptor, MAPK and MTOR activator 1","termid":"PBO:0053011"}


id: PBO:0108705
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RanGAP Hba1","termid":"PBO:0108705"}


id: GO:0051710
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that modulates the frequency, rate or extent of the cytolysis by an organism of cells in another organism.","definition_xrefs":["GOC:ai"],"gene_count":0,"genotype_count":0,"name":"obsolete regulation of cytolysis in another organism (obsolete GO:0051710)","synonyms":[{"name":"regulation of cytolysis in other organism","type":"exact"},{"name":"regulation of cytolysis of cells of another organism","type":"exact"}],"termid":"GO:0051710"}


id: PBO:0074159
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"solute carrier family 35 member F3","termid":"PBO:0074159"}


id: PBO:0087116
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Ribosome biogenesis factor; nucleolar protein associated with pre-rRNA components of the 90S preribosome, required for cleavage of pre-rRNA at A0, A1 and A2 sites; interacts with RNA helicase Dhr2p and RNA helicase-like protein Utp25p; required for incorporation of Utp25p into preribosomes","termid":"PBO:0087116"}


id: PBO:0079169
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"translocator protein 2","termid":"PBO:0079169"}


id: GO:0033562
data:
  {"annotated_genes":["SJAG_03689","SJAG_04574","SJAG_02621","SJAG_03356","SJAG_01601"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[94863,95292,106428,112060,114171],"is_not":false,"summary":null,"term":"GO:0033562"}]},"cv_name":"biological_process","definition":"A process in which the RNAi machinery mediates the degradation of nascent transcripts in association with chromatin.","definition_xrefs":["GOC:mah","PMID:22431512","GOC:vw","PMID:17512405","PMID:21151114"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulatory ncRNA-mediated gene silencing","termid":"GO:0031047"}],"gene_count":5,"genes_by_uniquename":{"SJAG_01601":null,"SJAG_02621":null,"SJAG_03356":null,"SJAG_03689":null,"SJAG_04574":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0010467"},{"rel_name":"negatively_regulates","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0008150","GO:0010467"],"is_obsolete":false,"name":"co-transcriptional gene silencing by RNA interference machinery","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"RNAi-mediated CTGS","type":"exact"},{"name":"co-transcriptional gene silencing by small RNA","type":"exact"},{"name":"cotranscriptional gene silencing by RNA interference machinery","type":"related"},{"name":"cotranscriptional gene silencing by small RNA","type":"related"},{"name":"small RNA-mediated cotranscriptional gene silencing","type":"exact"}],"termid":"GO:0033562","terms_by_termid":{"GO:0033562":null}}


id: GO:2000735
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of glial cell-derived neurotrophic factor receptor signaling pathway involved in ureteric bud formation.","definition_xrefs":["GOC:obol"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of signal transduction","termid":"GO:0009967"},{"relation_name":"is_a","term_name":"regulation of glial cell-derived neurotrophic factor receptor signaling pathway involved in ureteric bud formation","termid":"GO:2000733"},{"relation_name":"positively_regulates","term_name":"glial cell-derived neurotrophic factor receptor signaling pathway involved in ureteric bud formation","termid":"GO:2000701"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0023052"},{"rel_name":"positively_regulates","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"positive regulation of glial cell-derived neurotrophic factor receptor signaling pathway involved in ureteric bud formation","synonyms":[{"name":"positive regulation of GDNF receptor signaling pathway of ureteric bud formation","type":"exact"},{"name":"positive regulation of glial cell derived neurotrophic factor receptor signaling pathway of ureteric bud formation","type":"exact"},{"name":"positive regulation of glial cell line-derived neurotrophic factor receptor signalling pathway of ureteric bud formation","type":"exact"},{"name":"positive regulation of glial cell-derived neurotrophic factor receptor signaling pathway of ureteric bud formation","type":"exact"},{"name":"positive regulation of glial cell-derived neurotrophic factor receptor signalling pathway of ureteric bud formation","type":"exact"}],"termid":"GO:2000735"}


id: FYPO:0006114
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of protein measured in a cell during S phase of the mitotic cell cycle is higher than normal. Total protein or a specific protein may be affected.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased protein level during vegetative growth","termid":"FYPO:0001327"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0006551"},{"rel_name":"output_of","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0000002","FYPO:0001320","FYPO:0006551","FYPO:0001985"],"is_obsolete":false,"name":"increased protein level during mitotic S phase","synonyms":[{"name":"increased protein accumulation during mitotic S phase","type":"related"},{"name":"increased protein level during S phase of mitotic cell cycle","type":"related"},{"name":"increased protein level during mitotic S phase during vegetative growth","type":"exact"}],"termid":"FYPO:0006114"}


id: PBO:0042576
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CDKN2B antisense RNA 1","termid":"PBO:0042576"}


id: PBO:0060483
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Nanog homeobox pseudogene 5","termid":"PBO:0060483"}


id: GO:1904147
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a nonylphenol stimulus.","definition_xrefs":["GO_REF:0000071","GOC:TermGenie","PMID:19260726"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to organic substance","termid":"GO:0010033"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"response to nonylphenol","termid":"GO:1904147"}


id: GO:0106120
data:
  {"annotated_genes":["SJAG_04018"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[105784],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0070452"}]},"cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of a sterol biosynthetic process.","definition_xrefs":["GOC:BHF_miRNA","PMID:16459310","GOC:BHF","GOC:rph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of steroid biosynthetic process","termid":"GO:0010893"},{"relation_name":"is_a","term_name":"regulation of sterol biosynthetic process","termid":"GO:0106118"},{"relation_name":"positively_regulates","term_name":"sterol biosynthetic process","termid":"GO:0016126"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04018":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0006629"},{"rel_name":"positively_regulates","termid":"GO:0006629"}],"interesting_parent_ids":["GO:0006629","GO:0008150"],"is_obsolete":false,"name":"positive regulation of sterol biosynthetic process","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0106120","terms_by_termid":{"GO:0070452":null}}


id: PBO:0051717
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"insulin like 4","termid":"PBO:0051717"}


id: PBO:0070793
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L12 pseudogene 23","termid":"PBO:0070793"}


id: PBO:0060149
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial translation release factor 1 like","termid":"PBO:0060149"}


id: PBO:0090673
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosome preservation factor, Stm1 homolog Oga1","termid":"PBO:0090673"}


id: GO:0051336
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of hydrolase activity, the catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of catalytic activity","termid":"GO:0050790"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of hydrolase activity","synonyms":[{"name":"hydrolase regulator","type":"exact"}],"termid":"GO:0051336"}


id: PBO:0084917
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Molecular chaperone; required for the assembly of alpha and beta subunits into the F1 sector of mitochondrial F1F0 ATP synthase; N-terminally propionylated in vivo","termid":"PBO:0084917"}


id: PBO:0054884
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2298","termid":"PBO:0054884"}


id: GO:0046722
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The controlled release of lactic acid, 2-hydroxypropanoic acid, by a cell or a tissue.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"plasma membrane lactate transport","termid":"GO:0035879"},{"relation_name":"is_a","term_name":"acid secretion","termid":"GO:0046717"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0055085"},{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0055085","GO:0051179","GO:0008150","GO:0006810"],"is_obsolete":false,"name":"lactic acid secretion","synonyms":[{"name":"lactate secretion","type":"exact"}],"termid":"GO:0046722"}


id: GO:0019217
data:
  {"annotated_genes":["SJAG_03130"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[107223],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0045717"}]},"cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving fatty acids.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of cellular ketone metabolic process","termid":"GO:0010565"},{"relation_name":"is_a","term_name":"regulation of lipid metabolic process","termid":"GO:0019216"},{"relation_name":"regulates","term_name":"fatty acid metabolic process","termid":"GO:0006631"}],"gene_count":1,"genes_by_uniquename":{"SJAG_03130":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0006629"},{"rel_name":"regulates","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0044281","GO:0006629","GO:0008150"],"is_obsolete":false,"name":"regulation of fatty acid metabolic process","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["GO:0006632"],"synonyms":[{"name":"regulation of fatty acid metabolism","type":"exact"}],"termid":"GO:0019217","terms_by_termid":{"GO:0045717":null}}


id: PBO:0074226
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SLC45A4 antisense RNA 1","termid":"PBO:0074226"}


id: PBO:0081657
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein 582","termid":"PBO:0081657"}


id: FYPO:0000009
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which adhesion of a cell to a substrate or another cell is abnormal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal cellular process during vegetative growth","termid":"FYPO:0001362"},{"relation_name":"is_a","term_name":"abnormal cell adhesion","termid":"FYPO:0001872"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0001985","FYPO:0005447","FYPO:0000002"],"is_obsolete":false,"name":"abnormal cell adhesion during vegetative growth","synonyms":[{"name":"abnormal cell adhesion during mitotic cell cycle","type":"related"},{"name":"adhesion defects during vegetative growth","type":"exact"}],"termid":"FYPO:0000009"}


id: GO:0034763
data:
  {"annotated_genes":["SJAG_03631","SJAG_00296","SJAG_03970"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[109389,86740],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1905949"},{"annotations":[83557],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1905533"},{"annotations":[83558],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1905530"}]},"cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of the directed movement of a solute from one side of a membrane to the other.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of transmembrane transport","termid":"GO:0034762"},{"relation_name":"is_a","term_name":"negative regulation of cellular process","termid":"GO:0048523"},{"relation_name":"is_a","term_name":"negative regulation of transport","termid":"GO:0051051"},{"relation_name":"negatively_regulates","term_name":"transmembrane transport","termid":"GO:0055085"}],"gene_count":3,"genes_by_uniquename":{"SJAG_00296":null,"SJAG_03631":null,"SJAG_03970":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"regulates","termid":"GO:0055085"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"negatively_regulates","termid":"GO:0006810"},{"rel_name":"negatively_regulates","termid":"GO:0055085"}],"interesting_parent_ids":["GO:0006810","GO:0008150","GO:0055085"],"is_obsolete":false,"name":"negative regulation of transmembrane transport","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"down regulation of transmembrane transport","type":"exact"},{"name":"down-regulation of transmembrane transport","type":"exact"},{"name":"downregulation of transmembrane transport","type":"exact"},{"name":"inhibition of transmembrane transport","type":"narrow"},{"name":"negative regulation of membrane transport","type":"exact"}],"termid":"GO:0034763","terms_by_termid":{"GO:1905530":null,"GO:1905533":null,"GO:1905949":null}}


id: GO:0051557
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of leucoanthocyanidins, a class of colorless intermediates in the biosynthetic pathway of the pigmented flavonoids.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phenylpropanoid biosynthetic process","termid":"GO:0009699"},{"relation_name":"is_a","term_name":"flavonoid biosynthetic process","termid":"GO:0009813"},{"relation_name":"is_a","term_name":"heterocycle biosynthetic process","termid":"GO:0018130"},{"relation_name":"is_a","term_name":"leucoanthocyanidin metabolic process","termid":"GO:0051556"},{"relation_name":"is_a","term_name":"organic hydroxy compound biosynthetic process","termid":"GO:1901617"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0019748"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0019748"],"is_obsolete":false,"name":"leucoanthocyanidin biosynthetic process","termid":"GO:0051557"}


id: GO:0031652
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the rate or extent of heat generation.","definition_xrefs":["GOC:dph","GOC:mah","GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of heat generation","termid":"GO:0031650"},{"relation_name":"is_a","term_name":"positive regulation of multicellular organismal process","termid":"GO:0051240"},{"relation_name":"positively_regulates","term_name":"heat generation","termid":"GO:0031649"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of heat generation","synonyms":[{"name":"activation of heat generation","type":"narrow"},{"name":"stimulation of heat generation","type":"narrow"},{"name":"up regulation of heat generation","type":"exact"},{"name":"up-regulation of heat generation","type":"exact"},{"name":"upregulation of heat generation","type":"exact"}],"termid":"GO:0031652"}


id: PBO:0000650
data:
  {"annotation_feature_type":"gene","cv_name":"complementation","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"functionally complements S. cerevisiae RPC19","termid":"PBO:0000650"}


id: GO:0045612
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of hemocyte differentiation.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of immune system process","termid":"GO:0002684"},{"relation_name":"is_a","term_name":"positive regulation of cell differentiation","termid":"GO:0045597"},{"relation_name":"is_a","term_name":"regulation of hemocyte differentiation","termid":"GO:0045610"},{"relation_name":"positively_regulates","term_name":"hemocyte differentiation","termid":"GO:0042386"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of hemocyte differentiation","synonyms":[{"name":"activation of hemocyte differentiation","type":"narrow"},{"name":"positive regulation of arthropod blood cell differentiation","type":"exact"},{"name":"stimulation of hemocyte differentiation","type":"narrow"},{"name":"up regulation of hemocyte differentiation","type":"exact"},{"name":"up-regulation of hemocyte differentiation","type":"exact"},{"name":"upregulation of hemocyte differentiation","type":"exact"}],"termid":"GO:0045612"}


id: PBO:0071430
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L31 pseudogene 36","termid":"PBO:0071430"}


id: GO:1903226
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of endodermal cell differentiation.","definition_xrefs":["GOC:als","GOC:TermGenie","GO_REF:0000058","PMID:23154389"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of cell differentiation","termid":"GO:0045597"},{"relation_name":"is_a","term_name":"regulation of endodermal cell differentiation","termid":"GO:1903224"},{"relation_name":"positively_regulates","term_name":"endodermal cell differentiation","termid":"GO:0035987"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of endodermal cell differentiation","synonyms":[{"name":"activation of endoderm cell differentiation","type":"narrow"},{"name":"activation of endodermal cell differentiation","type":"narrow"},{"name":"positive regulation of endoderm cell differentiation","type":"exact"},{"name":"up regulation of endoderm cell differentiation","type":"exact"},{"name":"up regulation of endodermal cell differentiation","type":"exact"},{"name":"up-regulation of endoderm cell differentiation","type":"exact"},{"name":"up-regulation of endodermal cell differentiation","type":"exact"},{"name":"upregulation of endoderm cell differentiation","type":"exact"},{"name":"upregulation of endodermal cell differentiation","type":"exact"}],"termid":"GO:1903226"}


id: GO:0060064
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Formation of the specialized region at the anterior end of the primitive streak of the embryo that acts as the main signaling center establishing the body plan.","definition_xrefs":["GOC:dph","PMID:9442883"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Spemann organizer formation","termid":"GO:0060061"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"Spemann organizer formation at the anterior end of the primitive streak","synonyms":[{"name":"Spemann organizer formation in amniotes","type":"related"},{"name":"Spemann's organizer formation at the anterior end of the primitive streak","type":"exact"},{"name":"Spemann-Mangold organizer formation at the anterior end of the primitive streak","type":"related"}],"termid":"GO:0060064"}


id: PBO:0081567
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein 492","termid":"PBO:0081567"}


id: PBO:0011154
data:
  {"annotation_feature_type":"gene","cv_name":"disease_associated","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Metachromatic leukodystrophy","termid":"PBO:0011154"}


id: PBO:0068555
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U2 small nuclear 6, pseudogene","termid":"PBO:0068555"}


id: GO:1900895
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of tridecane metabolic process.","definition_xrefs":["GOC:mengo_curators","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of cellular metabolic process","termid":"GO:0031325"},{"relation_name":"is_a","term_name":"regulation of tridecane metabolic process","termid":"GO:1900893"},{"relation_name":"positively_regulates","term_name":"tridecane metabolic process","termid":"GO:1900631"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of tridecane metabolic process","synonyms":[{"name":"activation of tridecane metabolic process","type":"narrow"},{"name":"activation of tridecane metabolism","type":"narrow"},{"name":"positive regulation of tridecane metabolism","type":"related"},{"name":"up regulation of tridecane metabolic process","type":"exact"},{"name":"up regulation of tridecane metabolism","type":"related"},{"name":"up-regulation of tridecane metabolic process","type":"exact"},{"name":"up-regulation of tridecane metabolism","type":"related"},{"name":"upregulation of tridecane metabolic process","type":"exact"},{"name":"upregulation of tridecane metabolism","type":"related"}],"termid":"GO:1900895"}


id: PBO:0055354
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2783","termid":"PBO:0055354"}


id: PBO:0067633
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 806, pseudogene","termid":"PBO:0067633"}


id: GO:1903084
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process in which a protein is transported to, or maintained in, a location within a condensed nuclear chromosome.","definition_xrefs":["GO_REF:0000087","GOC:kmv","GOC:TermGenie","PMID:12707312"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein localization to nucleus","termid":"GO:0034504"},{"relation_name":"is_a","term_name":"protein localization to condensed chromosome","termid":"GO:1903083"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0051179"],"is_obsolete":false,"name":"protein localization to condensed nuclear chromosome","synonyms":[{"name":"protein localisation in condensed nuclear chromosome","type":"exact"},{"name":"protein localisation to condensed nuclear chromosome","type":"exact"},{"name":"protein localization in condensed nuclear chromosome","type":"exact"}],"termid":"GO:1903084"}


id: GO:0061324
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The canonical Wnt signaling pathway that contributes to the modulation of the expansion of a population of cardiac outflow tract cells.","definition_xrefs":["GOC:mtg_heart","GOC:dph"],"gene_count":0,"genotype_count":0,"name":"obsolete canonical Wnt signaling pathway involved in positive regulation of cardiac outflow tract cell proliferation (obsolete GO:0061324)","synonyms":[{"name":"canonical Wnt receptor signaling pathway involved in positive regulation of cardiac outflow tract cell proliferation","type":"exact"},{"name":"canonical Wnt receptor signalling pathway involved in positive regulation of cardiac outflow tract cell proliferation","type":"exact"},{"name":"canonical Wnt-activated signaling pathway involved in positive regulation of cardiac outflow tract cell proliferation","type":"exact"}],"termid":"GO:0061324"}


id: PBO:0081067
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger DHHC-type containing 1","termid":"PBO:0081067"}


id: GO:0044840
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A lysosome-related organelle contained within the intestinal cells of the nematode C. elegans. Gut granules are acidified, birefringent, autofluorescent, and contain the vacuolar H+-ATPase. They also serve as sites of cellular zinc storage.","definition_xrefs":["PMID:24204312","GOC:kmv","PMID:22916203"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cytoplasmic vesicle","termid":"GO:0031410"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0031410"},{"rel_name":"part_of","termid":"GO:0005737"}],"interesting_parent_ids":["GO:0031410","GO:0005737","GO:0005575"],"is_obsolete":false,"name":"gut granule","termid":"GO:0044840"}


id: PBO:0061266
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"notum, palmitoleoyl-protein carboxylesterase","termid":"PBO:0061266"}


id: PBO:0004958
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PI31 proteasome regulator related","termid":"PBO:0004958"}


id: GO:0004857
data:
  {"annotated_genes":["SJAG_01072","SJAG_02194","SJAG_04398","SJAG_03272","SJAG_04627","SJAG_02594","SJAG_04505","SJAG_04546","SJAG_01515","SJAG_01210","SJAG_01118","SJAG_01348","SJAG_00460","SJAG_04699","SJAG_04203","SJAG_03309","SJAG_01245","SJAG_04633","SJAG_04999","SJAG_03629","SJAG_02786","SJAG_02380","SJAG_00452","SJAG_02874","SJAG_01821","SJAG_03931","SJAG_02485"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[105160],"is_not":false,"summary":null,"term":"GO:0004857"},{"annotations":[96202],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004862"},{"annotations":[104812],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004861"},{"annotations":[99094,112924,84914],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004866"},{"annotations":[112392],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0005095"},{"annotations":[87739,92932],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1990624"},{"annotations":[107128],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0008073"},{"annotations":[95711],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0030414"},{"annotations":[111382,102899],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004860"},{"annotations":[84885,85797],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004864"},{"annotations":[104320],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0030291"},{"annotations":[83318,95177,107339],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004865"},{"annotations":[84323],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0008428"},{"annotations":[92777,91163],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1990846"},{"annotations":[88793],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004867"},{"annotations":[90753],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0010521"},{"annotations":[94424,111619],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1990948"},{"annotations":[110685],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0055105"}]},"cv_name":"molecular_function","definition":"Binds to and stops, prevents or reduces the activity of an enzyme.","definition_xrefs":["GOC:ai","GOC:ebc"],"direct_ancestors":[{"relation_name":"is_a","term_name":"enzyme regulator activity","termid":"GO:0030234"},{"relation_name":"is_a","term_name":"molecular function inhibitor activity","termid":"GO:0140678"}],"gene_count":27,"genes_by_uniquename":{"SJAG_00452":null,"SJAG_00460":null,"SJAG_01072":null,"SJAG_01118":null,"SJAG_01210":null,"SJAG_01245":null,"SJAG_01348":null,"SJAG_01515":null,"SJAG_01821":null,"SJAG_02194":null,"SJAG_02380":null,"SJAG_02485":null,"SJAG_02594":null,"SJAG_02786":null,"SJAG_02874":null,"SJAG_03272":null,"SJAG_03309":null,"SJAG_03629":null,"SJAG_03931":null,"SJAG_04203":null,"SJAG_04398":null,"SJAG_04505":null,"SJAG_04546":null,"SJAG_04627":null,"SJAG_04633":null,"SJAG_04699":null,"SJAG_04999":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0098772"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0140678"},{"rel_name":"is_a","termid":"GO:0030234"}],"interesting_parent_ids":["GO:0030234","GO:0098772","GO:0140678","GO:0003674"],"is_obsolete":false,"name":"enzyme inhibitor activity","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["GO:0048551"],"synonyms":[{"name":"metalloenzyme inhibitor activity","type":"narrow"}],"termid":"GO:0004857","terms_by_termid":{"GO:0004857":null,"GO:0004860":null,"GO:0004861":null,"GO:0004862":null,"GO:0004864":null,"GO:0004865":null,"GO:0004866":null,"GO:0004867":null,"GO:0005095":null,"GO:0008073":null,"GO:0008428":null,"GO:0010521":null,"GO:0030291":null,"GO:0030414":null,"GO:0055105":null,"GO:1990624":null,"GO:1990846":null,"GO:1990948":null}}


id: GO:0046560
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the hydrolysis of proteins with broad specificity, cleaving Phe24-Phe, but not Leu15-Tyr and Phe25-Tyr in the B chain of insulin.","definition_xrefs":["EC:3.4.23.32"],"gene_count":0,"genotype_count":0,"name":"obsolete scytalidopepsin B activity (obsolete GO:0046560)","synonyms":[{"name":"Ganoderma lucidum aspartic proteinase activity","type":"related"},{"name":"Ganoderma lucidum carboxyl proteinase activity","type":"related"},{"name":"SLB","type":"related"},{"name":"Scytalidium aspartic proteinase B activity","type":"related"},{"name":"Scytalidium lignicolum aspartic proteinase B","type":"related"},{"name":"scytalidopepsin B activity","type":"exact"}],"termid":"GO:0046560"}


id: PBO:0029421
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_protein_palmitoylation_during_vegetative_growth","termid":"PBO:0029421"}


id: GO:0051307
data:
  {"annotated_genes":["SJAG_01515","SJAG_02542","SJAG_02104","SJAG_04259","SJAG_01330","SJAG_00145","SJAG_01082","SJAG_01837","SJAG_04126","SJAG_03327","SJAG_04457"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[113658],"is_not":false,"summary":null,"term":"GO:0051307"},{"annotations":[102187,110553],"is_not":false,"rel_names":["negatively_regulates","regulates"],"summary":null,"term":"GO:1905318"},{"annotations":[89507,106123],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0051755"},{"annotations":[110555,102188,97581,112758],"is_not":false,"rel_names":["negatively_regulates","regulates"],"summary":null,"term":"GO:0033316"},{"annotations":[94423],"is_not":false,"rel_names":["negatively_regulates","regulates"],"summary":null,"term":"GO:1902103"},{"annotations":[109832],"is_not":false,"rel_names":["regulates"],"summary":null,"term":"GO:1905326"},{"annotations":[90818],"is_not":false,"rel_names":["positively_regulates","regulates"],"summary":null,"term":"GO:1905191"},{"annotations":[97113],"is_not":false,"rel_names":["regulates"],"summary":null,"term":"GO:1905325"}]},"cv_name":"biological_process","definition":"The process in which chromosomes are physically detached from each other during meiosis.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"chromosome separation","termid":"GO:0051304"},{"relation_name":"is_a","term_name":"meiotic cell cycle process","termid":"GO:1903046"},{"relation_name":"part_of","term_name":"meiotic chromosome segregation","termid":"GO:0045132"}],"gene_count":11,"genes_by_uniquename":{"SJAG_00145":null,"SJAG_01082":null,"SJAG_01330":null,"SJAG_01515":null,"SJAG_01837":null,"SJAG_02104":null,"SJAG_02542":null,"SJAG_03327":null,"SJAG_04126":null,"SJAG_04259":null,"SJAG_04457":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0140013"},{"rel_name":"part_of","termid":"GO:0007049"}],"interesting_parent_ids":["GO:0007049","GO:0140013","GO:0008150"],"is_obsolete":false,"name":"meiotic chromosome separation","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"chromosome separation during meiosis","type":"exact"},{"name":"meiotic chromosome resolution","type":"exact"}],"termid":"GO:0051307","terms_by_termid":{"GO:0033316":null,"GO:0051307":null,"GO:0051755":null,"GO:1902103":null,"GO:1905191":null,"GO:1905318":null,"GO:1905325":null,"GO:1905326":null}}


id: GO:0140951
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: L-lysyl27-[histone H3] + 3 S-adenosyl-L-methionine = 3 H+ + N6,N6,N6-trimethyl-L-lysyl27-[histone H3] + 3 S-adenosyl-L-homocysteine. This reaction is the successive addition of three methyl groups to the unmethylated lysine residue at position 27 of histone H3, producing histone H3K27me3.","definition_xrefs":["RHEA:60292"],"direct_ancestors":[{"relation_name":"is_a","term_name":"histone H3K27 methyltransferase activity","termid":"GO:0046976"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0140096"},{"rel_name":"is_a","termid":"GO:0008276"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0016741"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016741","GO:0016740","GO:0140096","GO:0008276","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"histone H3K27 trimethyltransferase activity","secondary_identifiers":["EC:2.1.1.356"],"synonyms":[{"name":"histone H3-K27 trimethylase activity","type":"exact"},{"name":"histone H3-K27 trimethylation","type":"broad"},{"name":"histone H3K27 mono/di/trimethylase activity","type":"exact"},{"name":"histone H3K27 trimethylase activity","type":"exact"},{"name":"histone H3K27 trimethylation","type":"broad"},{"name":"histone lysine N-trimethyltransferase activity (H3-K27 specific)","type":"exact"}],"termid":"GO:0140951"}


id: PBO:0061915
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 1 subfamily D member 3 pseudogene","termid":"PBO:0061915"}


id: PR:Q92398
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- pmk1 gene.","definition_xrefs":["UniProtKB:Q92398","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitogen-activated protein kinase spm1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC119.08","synonyms":[{"name":"MAP kinase pmk1 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"MAP kinase spm1 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-pmk1","type":"exact"}],"termid":"PR:Q92398"}


id: PBO:0004391
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"serine/threonine protein phosphatase PP1","termid":"PBO:0004391"}


id: PBO:0074425
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small integral membrane protein 24","termid":"PBO:0074425"}


id: GO:0032963
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving collagen, any of a group of fibrous proteins of very high tensile strength that form the main component of connective tissue in animals. Collagen is highly enriched in glycine (some regions are 33% glycine) and proline, occurring predominantly as 3-hydroxyproline (about 20%).","definition_xrefs":["GOC:mah","ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"metabolic process","termid":"GO:0008152"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"collagen metabolic process","synonyms":[{"name":"collagen metabolism","type":"exact"}],"termid":"GO:0032963"}


id: GO:1990360
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A protein complex capable of phosphorylating a large number of protein targets. Contributes to cell proliferation under glycose starvation conditions. In human, the complex is present as a dimer.","definition_xrefs":["PMID:24606918","GOC:bhm"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein kinase complex","termid":"GO:1902911"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0005575","GO:0032991"],"is_obsolete":false,"name":"PKM2 protein kinase complex","synonyms":[{"name":"PKM2-SAICAR complex","type":"related"},{"name":"PKM2-SAICAR protein kinase complex","type":"related"}],"termid":"GO:1990360"}


id: GO:0106377
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 2-hydroxy-ATP + H2O = 2-hydroxy-AMP + H+ + diphosphate.","definition_xrefs":["RHEA:67392","PMID:11139615"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nucleoside triphosphate diphosphatase activity","termid":"GO:0047429"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0047429"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0047429","GO:0016787"],"is_obsolete":false,"name":"2-hydroxy-ATP hydrolase activity","secondary_identifiers":["Reactome:R-HSA-2395872"],"termid":"GO:0106377"}


id: GO:0004128
data:
  {"annotated_genes":["SJAG_00235","SJAG_02794","SJAG_02395"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[76417,87775,112809,114862],"is_not":false,"summary":null,"term":"GO:0004128"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: NAD(P)H + H+ + 2 ferricytochrome b(5) = NAD(P)+ + 2 ferrocytochrome b(5).","definition_xrefs":["ISBN:0198547684","EC:1.6.2.2"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on NAD(P)H, heme protein as acceptor","termid":"GO:0016653"}],"gene_count":3,"genes_by_uniquename":{"SJAG_00235":null,"SJAG_02395":null,"SJAG_02794":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003824","GO:0016491","GO:0003674"],"is_obsolete":false,"name":"cytochrome-b5 reductase activity, acting on NAD(P)H","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"secondary_identifiers":["Reactome:R-HSA-6806831","RHEA:46680","MetaCyc:CYTOCHROME-B5-REDUCTASE-RXN","Reactome:R-HSA-198824"],"synonyms":[{"name":"NADH 5alpha-reductase activity","type":"related"},{"name":"NADH-cytochrome b5 reductase activity","type":"related"},{"name":"NADH-cytochrome-b5 reductase activity","type":"related"},{"name":"NADH-ferricytochrome b5 oxidoreductase activity","type":"related"},{"name":"NADH:ferricytochrome-b5 oxidoreductase activity","type":"related"},{"name":"cytochrome b5 reductase activity","type":"related"},{"name":"dihydronicotinamide adenine dinucleotide-cytochrome b5 reductase activity","type":"related"},{"name":"reduced nicotinamide adeninedinucleotide-cytochrome b5 reductase activity","type":"related"}],"termid":"GO:0004128","terms_by_termid":{"GO:0004128":null}}


id: GO:0044656
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the volume of a post-lysosomal vacuole, a membrane-bounded intracellular vesicle formed late in the endocytic pathway when the pH in the vacuole becomes neutral prior to exocytosis.","definition_xrefs":["GOC:rjd","PMID:22008230"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of vesicle size","termid":"GO:0097494"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of post-lysosomal vacuole size","synonyms":[{"name":"regulation of post-lysosome size","type":"exact"},{"name":"regulation of postlysosomal vacuole size","type":"exact"},{"name":"regulation of postlysosome vacuole size","type":"exact"}],"termid":"GO:0044656"}


id: PBO:0090772
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"coatomer alpha subunit Cop1","termid":"PBO:0090772"}


id: GO:0160122
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which a relatively unspecialized cell acquires specialized features of an corneal epithelial cell, any of the cells making up an corneal epithelium.","definition_xrefs":["PMID:32697979","PMID:33414365"],"direct_ancestors":[{"relation_name":"is_a","term_name":"epithelial cell differentiation","termid":"GO:0030855"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"corneal epithelial cell differentiation","termid":"GO:0160122"}


id: SO:0002374
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A gene that codes for scaRNA possessing both box C/D and box H/ACA sequence motifs, guiding both the methylation and pseudouridylation of snRNAs.","definition_xrefs":["PMID:24659245","PMID:17099227"],"direct_ancestors":[{"relation_name":"is_a","term_name":"scaRNA_gene","termid":"SO:0002339"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"C-D_H_ACA_box_scaRNA_gene","synonyms":[{"name":"C/D-H/ACA scaRNA gene","type":"exact"}],"termid":"SO:0002374"}


id: GO:0036256
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a methylamine stimulus.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to methylamine","termid":"GO:0036255"},{"relation_name":"is_a","term_name":"cellular response to amine stimulus","termid":"GO:0071418"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cellular response to methylamine","termid":"GO:0036256"}


id: PBO:0069270
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 526, pseudogene","termid":"PBO:0069270"}


id: GO:0060534
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of the tracheal cartilage over time, from its formation to the mature structure. Cartilage is a connective tissue dominated by extracellular matrix containing collagen type II and large amounts of proteoglycan, particularly chondroitin sulfate.","definition_xrefs":["GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cartilage development","termid":"GO:0051216"},{"relation_name":"part_of","term_name":"trachea development","termid":"GO:0060438"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"trachea cartilage development","termid":"GO:0060534"}


id: PR:Q10332
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPBC582.10c gene.","definition_xrefs":["UniProtKB:Q10332","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized ATP-dependent helicase C582.10c (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC582.10c","synonyms":[{"name":"Spom972h-SPBC582.10c","type":"exact"}],"termid":"PR:Q10332"}


id: FYPO:0004031
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which UV-damage excision repair occurs to a lower extent than normal. UV-damage excision repair is a DNA repair process that is initiated by an endonuclease that introduces a single-strand incision immediately 5' of a UV-induced damage site, and that acts on both cyclobutane pyrimidine dimers (CPDs) and pyrimidine-pyrimidone 6-4 photoproducts (6-4PPs).","definition_xrefs":["PomBase:mah","GO:0070914"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal DNA repair during vegetative growth","termid":"FYPO:0000188"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000298"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000293"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0000293","FYPO:0000002","FYPO:0000298","FYPO:0001985","FYPO:0001320","FYPO:0005447"],"is_obsolete":false,"name":"decreased UV-damage excision repair","synonyms":[{"name":"decreased UV-damage excision repair during mitotic cell cycle","type":"related"},{"name":"decreased UV-damage excision repair during vegetative growth","type":"exact"},{"name":"decreased cyclobutane pyrimidine dimer repair","type":"narrow"},{"name":"decreased pyrimidine-pyrimidone 6-4 photoproduct repair","type":"narrow"},{"name":"reduced UV-damage excision repair","type":"exact"},{"name":"reduced removal of 6-4 photoproducts","type":"narrow"},{"name":"reduced removal of cyclobutane pyrimidine dimers","type":"narrow"}],"termid":"FYPO:0004031"}


id: GO:0009001
data:
  {"annotated_genes":["SJAG_05413","SJAG_04305"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[86774,97681],"is_not":false,"summary":null,"term":"GO:0009001"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: L-serine + acetyl-CoA = O-acetyl-L-serine + CoA.","definition_xrefs":["EC:2.3.1.30","RHEA:24560"],"direct_ancestors":[{"relation_name":"is_a","term_name":"serine O-acyltransferase activity","termid":"GO:0016412"},{"relation_name":"is_a","term_name":"O-acetyltransferase activity","termid":"GO:0016413"}],"gene_count":2,"genes_by_uniquename":{"SJAG_04305":null,"SJAG_05413":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0016746"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0016746","GO:0003824","GO:0016740"],"is_obsolete":false,"name":"serine O-acetyltransferase activity","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["KEGG_REACTION:R00586","MetaCyc:SERINE-O-ACETTRAN-RXN"],"synonyms":[{"name":"L-serine acetyltransferase activity","type":"related"},{"name":"SATase activity","type":"related"},{"name":"acetyl-CoA:L-serine O-acetyltransferase activity","type":"related"},{"name":"serine acetyltransferase activity","type":"related"},{"name":"serine transacetylase activity","type":"related"}],"termid":"GO:0009001","terms_by_termid":{"GO:0009001":null}}


id: SO:0000521
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one V-gene and one VDJ-gene.","direct_ancestors":[{"relation_name":"has_part","term_name":"V_gene_segment","termid":"SO:0000466"},{"relation_name":"has_part","term_name":"VDJ_gene_segment","termid":"SO:0000574"},{"relation_name":"is_a","term_name":"vertebrate_immunoglobulin_T_cell_receptor_rearranged_gene_cluster","termid":"SO:0000938"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"V_VDJ_cluster","synonyms":[{"name":"V VDJ cluster","type":"exact"},{"name":"V-(VDJ)-CLUSTER","type":"exact"}],"termid":"SO:0000521"}


id: PBO:0084392
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Lsm (Like Sm) protein; forms heteroheptameric complex (with Lsm2p, Lsm3p, Lsm4p, Lsm5p, Lsm6p, and Lsm7p) involved in degradation of cytoplasmic mRNAs; also enters the nucleus and positively regulates transcription initiation; unlike most Sm-like proteins, Lsm1p requires both its SM-domain and C-terminal domain for RNA-binding; binds to mRNAs under glucose starvation, most often in the 3' UTR; forms cytoplasmic foci upon DNA replication stress","termid":"PBO:0084392"}


id: PBO:0083028
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Deleted ORF; does not encode a protein; this putative ORF was included in the original annotation of Chromosome III but was later withdrawn","termid":"PBO:0083028"}


id: PBO:0036466
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Hrd1 complex ubiquitin-protein ligase E3 subunit, Hrd1","termid":"PBO:0036466"}


id: PBO:0044295
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CXXC4 antisense RNA 1","termid":"PBO:0044295"}


id: GO:0004652
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the template-independent extension of the 3'- end of an RNA or DNA strand by addition of one adenosine molecule at a time. Cannot initiate a chain 'de novo'. The primer, depending on the source of the enzyme, may be an RNA or DNA fragment, or oligo(A) bearing a 3'-OH terminal group.","definition_xrefs":["EC:2.7.7.19"],"gene_count":0,"genotype_count":0,"name":"obsolete polynucleotide adenylyltransferase activity (obsolete GO:0004652)","synonyms":[{"name":"AMP polynucleotidylexotransferase activity","type":"related"},{"name":"ATP-polynucleotide adenylyltransferase activity","type":"related"},{"name":"ATP:polynucleotide adenylyltransferase activity","type":"related"},{"name":"ATP:polynucleotidylexotransferase activity","type":"related"},{"name":"NTP polymerase activity","type":"related"},{"name":"RNA adenylating enzyme activity","type":"related"},{"name":"RNA formation factors, PF1","type":"related"},{"name":"adenosine triphosphate:ribonucleic acid adenylyltransferase activity","type":"related"},{"name":"poly(A) hydrolase activity","type":"related"},{"name":"poly(A) polymerase activity","type":"related"},{"name":"poly(A) synthetase activity","type":"related"},{"name":"poly-A polymerase activity","type":"related"},{"name":"polyadenylate nucleotidyltransferase activity","type":"related"},{"name":"polyadenylate polymerase activity","type":"related"},{"name":"polyadenylate synthetase activity","type":"related"},{"name":"polyadenylic acid polymerase activity","type":"related"},{"name":"polyadenylic polymerase activity","type":"related"},{"name":"terminal riboadenylate transferase activity","type":"related"}],"termid":"GO:0004652"}


id: PBO:0011182
data:
  {"annotation_feature_type":"gene","cv_name":"feature_cvtermprop_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"approved_timestamp","termid":"PBO:0011182"}


id: PBO:0083264
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Dubious open reading frame; unlikely to encode a functional protein, based on available experimental and comparative sequence data; not conserved in closely related Saccharomyces species; 5% of ORF overlaps the verified gene IMP1","termid":"PBO:0083264"}


id: PR:O94569
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPBC1773.12 gene.","definition_xrefs":["UniProtKB:O94569","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized transcriptional regulatory protein C1773.12 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC1773.12","synonyms":[{"name":"Spom972h-SPBC1773.12","type":"exact"}],"termid":"PR:O94569"}


id: PBO:0054394
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1790","termid":"PBO:0054394"}


id: GO:0044815
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"OBSOLETE. A protein complex that plays a role in the process of DNA packaging.","definition_xrefs":["GOC:jl"],"gene_count":0,"genotype_count":0,"name":"obsolete DNA packaging complex (obsolete GO:0044815)","termid":"GO:0044815"}


id: GO:0030895
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"Protein complex that mediates editing of the mRNA encoding apolipoprotein B; catalyzes the deamination of C to U (residue 6666 in the human mRNA). Contains a catalytic subunit, APOBEC-1, and other proteins (e.g. human ASP; rat ASP and KSRP).","definition_xrefs":["PMID:10781591","PMID:12683974"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mRNA editing complex","termid":"GO:0045293"},{"relation_name":"is_a","term_name":"nuclear protein-containing complex","termid":"GO:0140513"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005634"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0032991","GO:0005634","GO:0005575"],"is_obsolete":false,"name":"apolipoprotein B mRNA editing enzyme complex","synonyms":[{"name":"APOBEC","type":"exact"},{"name":"apoB mRNA editing enzyme complex","type":"exact"}],"termid":"GO:0030895"}


id: PBO:0086937
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Rab family GTP-binding protein; contains the PEST signal sequence specific for proteolytic enzymes; may be involved in vesicular transport; overexpression leads to accumulation of Golgi-like cisternae with budding vesicles","termid":"PBO:0086937"}


id: GO:0051474
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Enables the transfer of a glucosylglycerol from one side of a membrane to the other. A glucosylglycerol is an alpha-D-glucopyranosyl-alpha-(1,2)-glycerol.","definition_xrefs":["GOC:ai","GOC:mtg_transport","ISBN:0815340729"],"direct_ancestors":[{"relation_name":"is_a","term_name":"carbohydrate transmembrane transporter activity","termid":"GO:0015144"},{"relation_name":"is_a","term_name":"polyol transmembrane transporter activity","termid":"GO:0015166"},{"relation_name":"is_a","term_name":"carbohydrate derivative transmembrane transporter activity","termid":"GO:1901505"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0022857"}],"interesting_parent_ids":["GO:0003674","GO:0022857","GO:0005215"],"is_obsolete":false,"name":"glucosylglycerol transmembrane transporter activity","termid":"GO:0051474"}


id: PBO:0044938
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"7-dehydrocholesterol reductase","termid":"PBO:0044938"}


id: PBO:0046891
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"family with sequence similarity 13 member B","termid":"PBO:0046891"}


id: PR:Q09797
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPAC22G7.03 gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q09797"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized protein C22G7.03 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC22G7.03","synonyms":[{"name":"Spom972h-SPAC22G7.03","type":"exact"}],"termid":"PR:Q09797"}


id: PBO:0005620
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"serine/threonine protein kinase Cek1","termid":"PBO:0005620"}


id: PBO:0069136
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 387, pseudogene","termid":"PBO:0069136"}


id: PBO:0055593
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 3029","termid":"PBO:0055593"}


id: PBO:0049265
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"gasdermin D","termid":"PBO:0049265"}


id: PBO:0058343
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 4716","termid":"PBO:0058343"}


id: PR:O94646
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- med8 gene.","definition_xrefs":["UniProtKB:O94646","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mediator of RNA polymerase II transcription subunit 8 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC21.04","synonyms":[{"name":"Spom972h-med8","type":"exact"},{"name":"cell separation protein sep15 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"mediator complex subunit 8 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:O94646"}


id: GO:1903316
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of nitrogen cycle metabolic process.","definition_xrefs":["GOC:TermGenie","GO_REF:0000058","GOC:vw"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of nitrogen compound metabolic process","termid":"GO:0051173"},{"relation_name":"is_a","term_name":"regulation of nitrogen cycle metabolic process","termid":"GO:1903314"},{"relation_name":"positively_regulates","term_name":"nitrogen cycle metabolic process","termid":"GO:0071941"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"positively_regulates","termid":"GO:0071941"},{"rel_name":"regulates","termid":"GO:0071941"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0071941"],"is_obsolete":false,"name":"positive regulation of nitrogen cycle metabolic process","synonyms":[{"name":"activation of nitrogen cycle metabolic process","type":"narrow"},{"name":"up regulation of nitrogen cycle metabolic process","type":"exact"},{"name":"up-regulation of nitrogen cycle metabolic process","type":"exact"},{"name":"upregulation of nitrogen cycle metabolic process","type":"exact"}],"termid":"GO:1903316"}


id: _global:results_in_commitment_to
data:
  {"annotation_feature_type":"gene","cv_name":"go/extensions/gorel","definition":"p 'results in commitment to' c if and only if p is a developmental process and c is a cell and p results in the state of c changing such that is can only develop into a single cell type.","direct_ancestors":[{"relation_name":"is_a","term_name":"go_annotation_extension_relation","termid":"_global:go_annotation_extension_relation"},{"relation_name":"is_a","term_name":"results_in_developmental_progression_of","termid":"_global:results_in_developmental_progression_of"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"results_in_commitment_to","secondary_identifiers":["RO:0002348","GOREL:0001017"],"termid":"_global:results_in_commitment_to"}


id: GO:1905368
data:
  {"annotated_genes":["SJAG_03261","SJAG_04088","SJAG_00766","SJAG_04144","SJAG_05278","SJAG_04969","SJAG_04888","SJAG_00184","SJAG_04274","SJAG_00128","SJAG_00808","SJAG_01014","SJAG_03292","SJAG_00087","SJAG_03599","SJAG_04613","SJAG_01658","SJAG_02927","SJAG_03668","SJAG_00460","SJAG_01750","SJAG_01131","SJAG_03321","SJAG_01203","SJAG_04572","SJAG_03672","SJAG_04484","SJAG_04357","SJAG_03733","SJAG_00738","SJAG_03752","SJAG_02867","SJAG_00778","SJAG_01179","SJAG_01617","SJAG_04205","SJAG_01475","SJAG_02458","SJAG_00846","SJAG_00712","SJAG_02341","SJAG_00641","SJAG_03737","SJAG_02066","SJAG_00584","SJAG_02542","SJAG_04229","SJAG_00762","SJAG_04541","SJAG_01711","SJAG_03151","SJAG_02502","SJAG_05316","SJAG_04477","SJAG_01544","SJAG_03638","SJAG_04306","SJAG_01652","SJAG_02562","SJAG_02541","SJAG_02773","SJAG_01489","SJAG_02776","SJAG_02900","SJAG_03408","SJAG_02992","SJAG_04211","SJAG_05282","SJAG_03776"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[111246],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0031597"},{"annotations":[82891,109998,86922,99537,87767],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0042765"},{"annotations":[106938],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0005745"},{"annotations":[97434,92081,106269,84342,109056],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0000502"},{"annotations":[83996,107356,95487,110696,111632,92146,97671],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0019773"},{"annotations":[113924,97672,89626,106665,88962,91906,93414,107106],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0019774"},{"annotations":[106177,109057],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0005838"},{"annotations":[94686,106178,100422,92440,109058,111248,99906,102955,101177,113506],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0008540"},{"annotations":[92082,97435,89783,84343,105235,111328,100189,94687,97892,107180,111216,88606,92792,94534],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0008541"},{"annotations":[102779,107716,103212,101633,83974,108542,110353,111442,112367,113646,113694,99182,94231,108985,87927,83818,84778,93532,86935,103578],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0000124"},{"annotations":[113656,99089],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1990520"},{"annotations":[83104,94147,99648,108550],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0005787"}]},"cv_name":"cellular_component","definition":"A protein complex which is capable of peptidase activity.","definition_xrefs":["GO_REF:0000088","GOC:TermGenie","PMID:1689240","GOC:bhm"],"direct_ancestors":[{"relation_name":"is_a","term_name":"catalytic complex","termid":"GO:1902494"}],"gene_count":69,"genes_by_uniquename":{"SJAG_00087":null,"SJAG_00128":null,"SJAG_00184":null,"SJAG_00460":null,"SJAG_00584":null,"SJAG_00641":null,"SJAG_00712":null,"SJAG_00738":null,"SJAG_00762":null,"SJAG_00766":null,"SJAG_00778":null,"SJAG_00808":null,"SJAG_00846":null,"SJAG_01014":null,"SJAG_01131":null,"SJAG_01179":null,"SJAG_01203":null,"SJAG_01475":null,"SJAG_01489":null,"SJAG_01544":null,"SJAG_01617":null,"SJAG_01652":null,"SJAG_01658":null,"SJAG_01711":null,"SJAG_01750":null,"SJAG_02066":null,"SJAG_02341":null,"SJAG_02458":null,"SJAG_02502":null,"SJAG_02541":null,"SJAG_02542":null,"SJAG_02562":null,"SJAG_02773":null,"SJAG_02776":null,"SJAG_02867":null,"SJAG_02900":null,"SJAG_02927":null,"SJAG_02992":null,"SJAG_03151":null,"SJAG_03261":null,"SJAG_03292":null,"SJAG_03321":null,"SJAG_03408":null,"SJAG_03599":null,"SJAG_03638":null,"SJAG_03668":null,"SJAG_03672":null,"SJAG_03733":null,"SJAG_03737":null,"SJAG_03752":null,"SJAG_03776":null,"SJAG_04088":null,"SJAG_04144":null,"SJAG_04205":null,"SJAG_04211":null,"SJAG_04229":null,"SJAG_04274":null,"SJAG_04306":null,"SJAG_04357":null,"SJAG_04477":null,"SJAG_04484":null,"SJAG_04541":null,"SJAG_04572":null,"SJAG_04613":null,"SJAG_04888":null,"SJAG_04969":null,"SJAG_05278":null,"SJAG_05282":null,"SJAG_05316":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0005575","GO:0032991"],"is_obsolete":false,"name":"peptidase complex","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"protease complex","type":"exact"},{"name":"tryptase complex","type":"narrow"}],"termid":"GO:1905368","terms_by_termid":{"GO:0000124":null,"GO:0000502":null,"GO:0005745":null,"GO:0005787":null,"GO:0005838":null,"GO:0008540":null,"GO:0008541":null,"GO:0019773":null,"GO:0019774":null,"GO:0031597":null,"GO:0042765":null,"GO:1990520":null}}


id: PBO:0084402
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Lysine methyltransferase; involved in the monomethylation of eEF1A (Tef1p/Tef2p); SET-domain family member; predicted involvement in ribosome biogenesis; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm","termid":"PBO:0084402"}


id: PBO:0004172
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DNA repair endonuclease Swi10","termid":"PBO:0004172"}


id: GO:0035035
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to an histone acetyltransferase.","definition_xrefs":["GOC:bf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"enzyme binding","termid":"GO:0019899"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0005515"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0005488","GO:0005515"],"is_obsolete":false,"name":"histone acetyltransferase binding","synonyms":[{"name":"histone acetylase binding","type":"exact"}],"termid":"GO:0035035"}


id: PR:P87175
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A DNA-(apurinic or apyrimidinic site) lyase 2 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PANTHER:PTHR22748:SF0","PRO:DNx","OMA:SCHPO02802"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DNA-(apurinic or apyrimidinic site) lyase 2 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC3D6.10","secondary_identifiers":["UniProtKB:P87175"],"synonyms":[{"name":"AP endonuclease 2 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-APEX2","type":"exact"},{"name":"apurinic-apyrimidinic endonuclease 2 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:P87175"}


id: PBO:0044263
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"C-X-C motif chemokine ligand 1 pseudogene 1","termid":"PBO:0044263"}


id: PBO:0000815
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"diacylglycerol cholinephosphotranferase/ diacylglycerol ethanolaminesphotranferase (predicted)","termid":"PBO:0000815"}


id: GO:2000339
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of chemokine (C-X-C motif) ligand 1 production.","definition_xrefs":["GOC:mah","GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of chemokine production","termid":"GO:0032682"},{"relation_name":"is_a","term_name":"regulation of chemokine (C-X-C motif) ligand 1 production","termid":"GO:2000338"},{"relation_name":"negatively_regulates","term_name":"chemokine (C-X-C motif) ligand 1 production","termid":"GO:0072566"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"negatively_regulates","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0008150","GO:0010467"],"is_obsolete":false,"name":"negative regulation of chemokine (C-X-C motif) ligand 1 production","synonyms":[{"name":"negative regulation of CXCL1 production","type":"exact"},{"name":"negative regulation of KC production","type":"exact"},{"name":"negative regulation of SCYB1 production","type":"exact"},{"name":"negative regulation of keratinocyte derived chemokine production","type":"exact"}],"termid":"GO:2000339"}


id: GO:0010810
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of cell-substrate adhesion. Cell-substrate adhesion is the attachment of a cell to the underlying substrate via adhesion molecules.","definition_xrefs":["GOC:pf","GOC:tb","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of cell adhesion","termid":"GO:0030155"},{"relation_name":"regulates","term_name":"cell-substrate adhesion","termid":"GO:0031589"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0007155"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0007155"],"is_obsolete":false,"name":"regulation of cell-substrate adhesion","termid":"GO:0010810"}


id: GO:0061212
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of the juxtaglomerular apparatus in the mesonephros over time, from its formation to the mature structure. The juxtaglomerular apparatus is an anatomical structure which consists of juxtaglomerular cells, extraglomerular mesangial cells and the macula densa. The juxtaglomerular apparatus lies adjacent to the glomerulus and regulates kidney function by maintaining the blood flow to the kidney and the filtration rate.","definition_xrefs":["GOC:mtg_kidney_jan10"],"direct_ancestors":[{"relation_name":"is_a","term_name":"juxtaglomerular apparatus development","termid":"GO:0072051"},{"relation_name":"part_of","term_name":"mesonephros development","termid":"GO:0001823"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"mesonephric juxtaglomerular apparatus development","termid":"GO:0061212"}


id: CHEBI:16526
data:
  {"annotation_feature_type":"gene","cv_name":"chebi_ontology","direct_ancestors":[{"relation_name":"is_a","term_name":"chemical entity","termid":"CHEBI:24431"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"carbon dioxide","termid":"CHEBI:16526"}


id: GO:0060434
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which the bronchus is generated and organized. The bronchus is the portion of the airway that connects to the lungs.","definition_xrefs":["GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"animal organ morphogenesis","termid":"GO:0009887"},{"relation_name":"is_a","term_name":"tube morphogenesis","termid":"GO:0035239"},{"relation_name":"part_of","term_name":"bronchus development","termid":"GO:0060433"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"bronchus morphogenesis","termid":"GO:0060434"}


id: PATO:0002425
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"Open to view or not covered by another entity.","definition_xrefs":["PATOC:WD"],"direct_ancestors":[{"relation_name":"is_a","term_name":"position","termid":"PATO:0000140"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"exposed","termid":"PATO:0002425"}


id: PR:P87306
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- srb4 gene.","definition_xrefs":["PRO:DNx","UniProtKB:P87306"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mediator of RNA polymerase II transcription subunit 17 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC31F10.04c","synonyms":[{"name":"Spom972h-srb4","type":"exact"},{"name":"mediator complex subunit 17 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"suppressor of RNA polymerase B 4 homolog (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:P87306"}


id: PBO:0002647
data:
  {"annotation_feature_type":"gene","cv_name":"disease_associated","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glycosylation disorders","termid":"PBO:0002647"}


id: PATO:0001915
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A spatial quality inhering in a bearer by virtue of the bearer's being located toward the front and upper surface of an organism relative to another entity.","definition_xrefs":["PATOC:wd"],"direct_ancestors":[{"relation_name":"is_a","term_name":"anterior to","termid":"PATO:0001632"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"anterodorsal to","termid":"PATO:0001915"}


id: GO:0033946
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: xyloglucan + H2O = xyloglucan oligosaccharides. This reaction is the endohydrolysis of (1->4)-beta-D-glucosidic linkages in xyloglucan.","definition_xrefs":["EC:3.2.1.151"],"direct_ancestors":[{"relation_name":"is_a","term_name":"beta-glucanase activity","termid":"GO:0052736"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016798"}],"interesting_parent_ids":["GO:0003674","GO:0016798","GO:0003824","GO:0016787"],"is_obsolete":false,"name":"xyloglucan-specific endo-beta-1,4-glucanase activity","secondary_identifiers":["MetaCyc:3.2.1.151-RXN"],"synonyms":[{"name":"1,4-beta-D-glucan glucanohydrolase activity","type":"broad"},{"name":"XEG","type":"related"},{"name":"XH","type":"related"},{"name":"[(1->6)-beta-D-xylo]-(1->4)-beta-D-glucan glucanohydrolase activity","type":"related"},{"name":"xyloglucan endo-beta-1,4-glucanase activity","type":"related"},{"name":"xyloglucanase activity","type":"related"},{"name":"xyloglucanendohydrolase activity","type":"related"}],"termid":"GO:0033946"}


id: PBO:0068534
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U1 small nuclear 136, pseudogene","termid":"PBO:0068534"}


id: GO:0052762
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: gellan = n beta-D-4-deoxy-delta4,5-GlcAp-(1->4)-beta-D-Glcp-(1->4)-alpha-L-Rhap-(1->3)-beta-D-Glcp. This reaction is the eliminative cleavage of beta-D-glucopyranosyl-(1->4)-beta-D-glucopyranosyluronate bonds of gellan backbone, releasing tetrasaccharides containing a 4-deoxy-4,5-unsaturated D-glucopyranosyluronic acid at the non-reducing end; in the product, the abbreviations are D-glucose (Glc), D-glucuronic acid (GlcA), and L-rhamnose (Rha).","definition_xrefs":["MetaCyc:RXN-12269","GOC:mengo_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"carbon-oxygen lyase activity, acting on polysaccharides","termid":"GO:0016837"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016829"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016829"],"is_obsolete":false,"name":"gellan lyase activity","secondary_identifiers":["EC:4.2.2.25"],"termid":"GO:0052762"}


id: PBO:0065686
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pituitary tumor-transforming 2","termid":"PBO:0065686"}


id: MOD:00238
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively cross-links an L-lysine residue and an L-tyrosine residue by a carbon-nitrogen bond to form 5'-(N6-L-lysine)-L-topaquinone.","definition_xrefs":["PubMed:8688089","RESID:AA0233"],"direct_ancestors":[{"relation_name":"is_a","term_name":"uncategorized crosslinked residues","termid":"MOD:00692"},{"relation_name":"is_a","term_name":"crosslinked L-lysine residue","termid":"MOD:02051"},{"relation_name":"is_a","term_name":"crosslinked L-tyrosine residue","termid":"MOD:02058"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"5'-(N6-L-lysine)-L-topaquinone","synonyms":[{"name":"1-[(S)-5-amino-5-carboxypentyl]amino-2-[(S)-2-amino-2-carboxyethyl]-2,6-cyclohexadien-4,5-dione","type":"exact"},{"name":"2'-(L-lys-N6-yl)-L-4',5'-topaquinone","type":"exact"},{"name":"2'-(L-lysine)-L-tyrosyl-4',5'-quinone","type":"exact"},{"name":"CROSSLNK Lysine tyrosylquinone (Lys-Tyr)","type":"exact"},{"name":"CROSSLNK Lysine tyrosylquinone (Tyr-Lys)","type":"exact"},{"name":"LTQ","type":"exact"},{"name":"lysyl oxidase cofactor","type":"exact"}],"termid":"MOD:00238"}


id: PBO:0038763
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"actin related protein 3C","termid":"PBO:0038763"}


id: GO:0018972
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving toluene-4-sulfonate, the anion of 4-toluene sulfonic acid, a white crystalline solid which is highly hygroscopic and soluble in water.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"organic acid metabolic process","termid":"GO:0006082"},{"relation_name":"is_a","term_name":"sulfur compound metabolic process","termid":"GO:0006790"},{"relation_name":"is_a","term_name":"toluene-containing compound metabolic process","termid":"GO:0072490"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006790"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0006790","GO:0044281"],"is_obsolete":false,"name":"toluene-4-sulfonate metabolic process","secondary_identifiers":["UM-BBD_pathwayID:tsa","MetaCyc:TOLSULFDEG-PWY"],"synonyms":[{"name":"4-methylbenzenesulfonate metabolic process","type":"exact"},{"name":"4-methylbenzenesulfonate metabolism","type":"exact"},{"name":"4-toluenesulfonate metabolic process","type":"exact"},{"name":"4-toluenesulfonate metabolism","type":"exact"},{"name":"toluene-4-sulfonate metabolism","type":"exact"},{"name":"toluene-4-sulphonate metabolic process","type":"exact"},{"name":"toluene-4-sulphonate metabolism","type":"exact"}],"termid":"GO:0018972"}


id: PBO:0050264
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"high mobility group nucleosomal binding domain 2 pseudogene 42","termid":"PBO:0050264"}


id: PATO:0001553
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A sensitivity of occurrent to oxygen which is higher than normal or average.","definition_xrefs":["PATO:GVG"],"direct_ancestors":[{"relation_name":"increased_in_magnitude_relative_to","term_name":"normal","termid":"PATO:0000461"},{"relation_name":"is_a","term_name":"aerobic (for occurrence)","termid":"PATO:0001459"},{"relation_name":"is_a","term_name":"increased sensitivity of a process","termid":"PATO:0001551"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"increased sensitivity of a process to oxygen","synonyms":[{"name":"high sensitivity of occurrent to oxygen","type":"exact"}],"termid":"PATO:0001553"}


id: PATO:0000530
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0000530 soil nutrient sensitivity value (obsolete PATO:0000530)","termid":"PATO:0000530"}


id: GO:1904799
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of neuron remodeling.","definition_xrefs":["GOC:TermGenie","PMID:21609829","GO_REF:0000058"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of neuron maturation","termid":"GO:0014041"},{"relation_name":"regulates","term_name":"neuron remodeling","termid":"GO:0016322"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of neuron remodeling","synonyms":[{"name":"regulation of axon pruning","type":"narrow"},{"name":"regulation of neuron remodelling","type":"exact"},{"name":"regulation of neuronal remodeling","type":"exact"}],"termid":"GO:1904799"}


id: GO:1990814
data:
  {"annotated_genes":["SJAG_03682","SJAG_00871","SJAG_03780","SJAG_03832"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[98987,108520,109419,111993],"is_not":false,"summary":null,"term":"GO:1990814"}]},"cv_name":"molecular_function","definition":"An activity that faciliates the formation of a complementary double-stranded DNA molecule.","definition_xrefs":["PMID:22888405","PMID:25520186"],"direct_ancestors":[{"relation_name":"is_a","term_name":"single-stranded DNA binding","termid":"GO:0003697"},{"relation_name":"is_a","term_name":"annealing activity","termid":"GO:0140666"}],"gene_count":4,"genes_by_uniquename":{"SJAG_00871":null,"SJAG_03682":null,"SJAG_03780":null,"SJAG_03832":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003677"}],"interesting_parent_ids":["GO:0005488","GO:0003674","GO:0003677"],"is_obsolete":false,"name":"DNA/DNA annealing activity","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"DNA reannealing activity","type":"exact"}],"termid":"GO:1990814","terms_by_termid":{"GO:1990814":null}}


id: PBO:0069394
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 654, pseudogene","termid":"PBO:0069394"}


id: PBO:0058405
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 4775","termid":"PBO:0058405"}


id: RO:0002158
data:
  {"annotation_feature_type":"gene","cv_name":"relationship","definition":"two individual entities d1 and d2 stand in a shares_ancestor_with relation if and only if there exists some a such that d1 derived_by_descent_from a and d2 derived_by_descent_from a.","direct_ancestors":[{"relation_name":"is_a","term_name":"evolutionarily_related_to","termid":"RO:0002320"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"shares_ancestor_with","termid":"RO:0002158"}


id: PBO:0052061
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"lysine acetyltransferase 2A","termid":"PBO:0052061"}


id: PBO:0080944
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger B-box domain containing","termid":"PBO:0080944"}


id: PBO:0111690
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"methyltransferase 14, N6-adenosine-methyltransferase non-catalytic subunit","termid":"PBO:0111690"}


id: PBO:0058323
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 4696","termid":"PBO:0058323"}


id: PBO:0111951
data:
  {"annotation_feature_type":"gene","cv_name":"pombase_family_or_domain","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Hir protein binding region","termid":"PBO:0111951"}


id: GO:0043275
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: N-acetyl-L-Asp-L-Glu + H2O = N-acetyl-L-Asp + L-Glu.","definition_xrefs":["GOC:jl","BRENDA:3.4.17.21"],"gene_count":0,"genotype_count":0,"name":"obsolete glutamate carboxypeptidase II activity (obsolete GO:0043275)","synonyms":[{"name":"N-acetylated alpha-linked acidic dipeptidase activity","type":"related"},{"name":"N-acetylated-alpha-linked-amino dipeptidase activity","type":"related"},{"name":"N-acetylated-gamma-linked-acidic dipeptidase (NAALADase)","type":"related"},{"name":"N-acetylated-gamma-linked-acidic dipeptidase activity","type":"related"},{"name":"NAALA dipeptidase activity","type":"related"},{"name":"NAALADase activity","type":"related"},{"name":"PSM antigen","type":"related"},{"name":"PSMA","type":"related"},{"name":"acetylaspartylglutamate dipeptidase activity","type":"exact"},{"name":"folate hydrolase activity","type":"related"},{"name":"folylpolyglutamate hydrolase activity","type":"related"},{"name":"glutamate carboxypeptidase II activity","type":"exact"},{"name":"mGCP","type":"related"},{"name":"membrane glutamate carboxypeptidase","type":"narrow"},{"name":"microsomal gamma-glutamyl carboxypeptidase","type":"narrow"},{"name":"prostate-specific membrane antigen","type":"related"},{"name":"prostrate-specific membrane antigen","type":"related"},{"name":"pteroylpoly-gamma-glutamate carboxypeptidase activity","type":"related"},{"name":"pteroylpoly-gamma-glutamate hydrolase activity","type":"related"},{"name":"pteroylpolygammaglutamyl hydrolase activity","type":"related"},{"name":"pteroylpolyglutamate hydrolase activity","type":"related"},{"name":"pteroylpolyglutamic acid hydrolase activity","type":"related"},{"name":"rat NAAG peptidase","type":"narrow"}],"termid":"GO:0043275"}


id: PBO:0029835
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-viable_swollen_vegetative_cell_with_abnormal_cell_shape","termid":"PBO:0029835"}


id: PBO:0049427
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"GUSB pseudogene 4","termid":"PBO:0049427"}


id: PBO:0045436
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DPY19L2 pseudogene 4","termid":"PBO:0045436"}


id: GO:0034427
data:
  {"annotated_genes":["SJAG_03179","SJAG_04153","SJAG_04321","SJAG_04118","SJAG_01818","SJAG_04084","SJAG_00226","SJAG_04006","SJAG_03805","SJAG_05014","SJAG_00854","SJAG_04824","SJAG_03886","SJAG_03876","SJAG_01218","SJAG_04056","SJAG_01521","SJAG_04818"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[91296],"is_not":false,"summary":null,"term":"GO:0034427"},{"annotations":[104742,97017,100240,112234,85300,113311,87045,102338,103345,92951,88681,114386,84238,101103,91592,111966,97871],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0070478"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of the mRNA transcript body that occurs when the 3' end is not protected by a 3'-poly(A) tail; degradation proceeds in the 3' to 5' direction.","definition_xrefs":["GOC:mah","GOC:krc"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nuclear-transcribed mRNA catabolic process, exonucleolytic","termid":"GO:0000291"}],"gene_count":18,"genes_by_uniquename":{"SJAG_00226":null,"SJAG_00854":null,"SJAG_01218":null,"SJAG_01521":null,"SJAG_01818":null,"SJAG_03179":null,"SJAG_03805":null,"SJAG_03876":null,"SJAG_03886":null,"SJAG_04006":null,"SJAG_04056":null,"SJAG_04084":null,"SJAG_04118":null,"SJAG_04153":null,"SJAG_04321":null,"SJAG_04818":null,"SJAG_04824":null,"SJAG_05014":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0044248"},{"rel_name":"is_a","termid":"GO:0016071"},{"rel_name":"negatively_regulates","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0044248","GO:0008150","GO:0010467","GO:0016071"],"is_obsolete":false,"name":"nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5'","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"3'-5' exonucleolytic nuclear-transcribed mRNA catabolic process","type":"exact"}],"termid":"GO:0034427","terms_by_termid":{"GO:0034427":null,"GO:0070478":null}}


id: FYPO:0006628
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of phosphatidylinositol-4-phosphate measured in the plasma membrane is lower than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased phosphatidylinositol phosphate level in plasma membrane","termid":"FYPO:0006222"},{"relation_name":"is_a","term_name":"decreased cellular phosphatidylinositol-4-phosphate level","termid":"FYPO:0006775"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0001320","FYPO:0001985","FYPO:0000002"],"is_obsolete":false,"name":"decreased phosphatidylinositol-4-phosphate level in plasma membrane","synonyms":[{"name":"decreased 1-phosphatidyl-1D-myo-inositol 4-phosphate level in plasma membrane","type":"exact"},{"name":"decreased phosphatidylinositol-4-phosphate level in cell membrane","type":"exact"},{"name":"decreased phosphatidylinositol-4-phosphate level in plasma membrane during mitotic cell cycle","type":"related"},{"name":"decreased phosphatidylinositol-4-phosphate level in plasma membrane during vegetative growth","type":"exact"},{"name":"decreased plasma membrane PI(5)P level","type":"exact"},{"name":"decreased plasma membrane phosphatidylinositol-4-phosphate level","type":"exact"},{"name":"reduced phosphatidylinositol-4-phosphate level in plasma membrane","type":"exact"}],"termid":"FYPO:0006628"}


id: GO:1905483
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of motor neuron migration.","definition_xrefs":["GOC:TermGenie","GO_REF:0000058","PMID:16516839"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of neuron migration","termid":"GO:2001222"},{"relation_name":"regulates","term_name":"motor neuron migration","termid":"GO:0097475"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of motor neuron migration","termid":"GO:1905483"}


id: PBO:0057071
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 151b","termid":"PBO:0057071"}


id: GO:1902767
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of isoprenoid via mevalonate.","definition_xrefs":["GO_REF:0000092","GOC:mengo_curators","GOC:TermGenie","PMID:11078528"],"direct_ancestors":[{"relation_name":"is_a","term_name":"isoprenoid biosynthetic process","termid":"GO:0008299"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006629"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0006629"],"is_obsolete":false,"name":"isoprenoid biosynthetic process via mevalonate","synonyms":[{"name":"isoprenoid anabolism via mevalonate","type":"exact"},{"name":"isoprenoid biosynthesis via mevalonate","type":"exact"},{"name":"isoprenoid formation via mevalonate","type":"exact"},{"name":"isoprenoid synthesis via mevalonate","type":"exact"}],"termid":"GO:1902767"}


id: PBO:0049499
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"H2A clustered histone 6","termid":"PBO:0049499"}


id: FYPO:0007154
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the biosynthesis of polyphosphate is normal (i.e. indistinguishable from wild type) during a cellular response to replete phosphate.","definition_xrefs":["PomBase:mah","PMID:1318242"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal metabolic process during vegetative growth","termid":"FYPO:0000859"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001312"}],"interesting_parent_ids":["FYPO:0000257","FYPO:0001320","FYPO:0001312","FYPO:0000002"],"is_obsolete":false,"name":"normal polyphosphate biosynthesis during cellular response to replete phosphate","synonyms":[{"name":"normal polyphosphate biosynthesis during cellular response to phosphate starvation during mitotic cell cycle","type":"related"},{"name":"normal polyphosphate biosynthesis during cellular response to replete phosphate during vegetative growth","type":"exact"},{"name":"normal polyphosphate biosynthetic process during cellular response to phosphate starvation","type":"exact"},{"name":"normal polyphosphate formation during cellular response to replete phosphate","type":"exact"}],"termid":"FYPO:0007154"}


id: GO:0061541
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which the anatomical structures of a rhabdomere are generated and organized. The rhabdomere is the organelle on the apical surface of a photoreceptor cell that contains the visual pigments.","definition_xrefs":["GOC:dph","PMID:22113834"],"direct_ancestors":[{"relation_name":"is_a","term_name":"neuron projection morphogenesis","termid":"GO:0048812"},{"relation_name":"part_of","term_name":"photoreceptor cell morphogenesis","termid":"GO:0008594"},{"relation_name":"part_of","term_name":"rhabdomere development","termid":"GO:0042052"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"rhabdomere morphogenesis","termid":"GO:0061541"}


id: GO:1902066
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of cell wall pectin metabolic process.","definition_xrefs":["PMID:23453954","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of polysaccharide metabolic process","termid":"GO:0032881"},{"relation_name":"regulates","term_name":"cell wall pectin metabolic process","termid":"GO:0052546"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0005975"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0005975","GO:0008150"],"is_obsolete":false,"name":"regulation of cell wall pectin metabolic process","synonyms":[{"name":"regulation of cell wall pectin metabolism","type":"exact"},{"name":"regulation of cellulose and pectin-containing cell wall pectin metabolic process","type":"exact"},{"name":"regulation of pectin metabolism during cell wall biogenesis","type":"exact"},{"name":"regulation of plant-type cell wall pectin metabolic process","type":"exact"}],"termid":"GO:1902066"}


id: PBO:0046598
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"endogenous retrovirus group K3 member 8","termid":"PBO:0046598"}


id: PBO:0074042
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"solute carrier family 25 member 25","termid":"PBO:0074042"}


id: PBO:0018013
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial inorganic phosphate transmembrane transporter (predicted)","termid":"PBO:0018013"}


id: PBO:0084876
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Mitochondrial ribosomal protein of the small subunit; MRP51 exhibits genetic interactions with mutations in the COX2 and COX3 mRNA 5'-untranslated leader sequences","termid":"PBO:0084876"}


id: PBO:0047381
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"F-box protein 15","termid":"PBO:0047381"}


id: PBO:0084304
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Iron-sulfur protein required for synthesis of wybutosine modified tRNA; wybutosine is a modified guanosine found at 3'-position adjacent to anticodon of phenylalanine tRNA which supports reading frame maintenance by stabilizing codon-anticodon interactions; induction by Yap5p in response to iron provides protection from high iron toxicity; overexpression results in increased cellular iron","termid":"PBO:0084304"}


id: GO:0032349
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of aldosterone.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of aldosterone metabolic process","termid":"GO:0032346"},{"relation_name":"is_a","term_name":"regulation of aldosterone biosynthetic process","termid":"GO:0032347"},{"relation_name":"is_a","term_name":"positive regulation of steroid hormone biosynthetic process","termid":"GO:0090031"},{"relation_name":"is_a","term_name":"positive regulation of alcohol biosynthetic process","termid":"GO:1902932"},{"relation_name":"positively_regulates","term_name":"aldosterone biosynthetic process","termid":"GO:0032342"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"positively_regulates","termid":"GO:0006629"},{"rel_name":"regulates","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0006629"},{"rel_name":"positively_regulates","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0006629","GO:0044281","GO:0008150"],"is_obsolete":false,"name":"positive regulation of aldosterone biosynthetic process","synonyms":[{"name":"activation of aldosterone biosynthetic process","type":"narrow"},{"name":"stimulation of aldosterone biosynthetic process","type":"narrow"},{"name":"up regulation of aldosterone biosynthetic process","type":"exact"},{"name":"up-regulation of aldosterone biosynthetic process","type":"exact"},{"name":"upregulation of aldosterone biosynthetic process","type":"exact"}],"termid":"GO:0032349"}


id: PBO:0090460
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cell surface fascilin domain protein, implicated in adhesion Mug57","termid":"PBO:0090460"}


id: PBO:0042628
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chromodomain Y-linked 3 pseudogene","termid":"PBO:0042628"}


id: PBO:0087642
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Subunit of the GINS complex (Sld5p, Psf1p, Psf2p, Psf3p); complex is localized to DNA replication origins and implicated in assembly of the DNA replication machinery","termid":"PBO:0087642"}


id: SO:0000906
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"Attribute to describe a feature that is independently known - not predicted.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"status","termid":"SO:0000905"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"independently_known","synonyms":[{"name":"independently known","type":"exact"}],"termid":"SO:0000906"}


id: MOD:01491
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively replaces an O3-hydrogen atom of a threonine residue with the Applied Biosystems iTRAQ4plex-114 reporter+balance group.","definition_xrefs":["PubMed:18688235"],"direct_ancestors":[{"relation_name":"is_a","term_name":"iTRAQ4plex-114 reporter+balance reagent acylated residue","termid":"MOD:01485"},{"relation_name":"is_a","term_name":"iTRAQ4plex reporter+balance reagent O-acylated residue","termid":"MOD:01713"},{"relation_name":"is_a","term_name":"O3-acylated L-threonine","termid":"MOD:02004"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:00649"}],"interesting_parent_ids":["MOD:00649"],"is_obsolete":false,"name":"iTRAQ4plex-114 reporter+balance reagent O3-acylated threonine","synonyms":[{"name":"(4-methylpiperazin-1-yl)acetyl","type":"exact"},{"name":"iTRAQ4plex114","type":"related"}],"termid":"MOD:01491"}


id: PBO:0005210
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DNA ligase Lig4","termid":"PBO:0005210"}


id: GO:0043451
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of an alkene, any acyclic branched or unbranched hydrocarbon having one carbon-carbon double bond and the general formula CnH2n.","definition_xrefs":["GOC:jl","Wikipedia:Alkene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular alkene metabolic process","termid":"GO:0043449"},{"relation_name":"is_a","term_name":"cellular catabolic process","termid":"GO:0044248"},{"relation_name":"is_a","term_name":"hydrocarbon catabolic process","termid":"GO:0120253"},{"relation_name":"is_a","term_name":"olefinic compound catabolic process","termid":"GO:0120256"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044248"}],"interesting_parent_ids":["GO:0008150","GO:0044248"],"is_obsolete":false,"name":"alkene catabolic process","synonyms":[{"name":"alkene breakdown","type":"exact"},{"name":"alkene catabolism","type":"exact"},{"name":"alkene degradation","type":"exact"}],"termid":"GO:0043451"}


id: GO:0061156
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which the anatomical structures of the pulmonary artery are generated and organized. The pulmonary artery is the artery that carries blood from the heart to the lungs.","definition_xrefs":["GOC:yaf","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"artery morphogenesis","termid":"GO:0048844"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"pulmonary artery morphogenesis","termid":"GO:0061156"}


id: PBO:0045767
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"enoyl-CoA delta isomerase 2","termid":"PBO:0045767"}


id: GO:0060754
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that increases the rate, frequency or extent of mast cell chemotaxis. Mast cell chemotaxis is the movement of a mast cell in response to an external stimulus.","definition_xrefs":["GOC:tb","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of leukocyte chemotaxis","termid":"GO:0002690"},{"relation_name":"is_a","term_name":"regulation of mast cell chemotaxis","termid":"GO:0060753"},{"relation_name":"positively_regulates","term_name":"mast cell chemotaxis","termid":"GO:0002551"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of mast cell chemotaxis","termid":"GO:0060754"}


id: GO:0019365
data:
  {"annotated_genes":["SJAG_03298","SJAG_04467","SJAG_00957"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[84511],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0034355"},{"annotations":[105553,84512,86171],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0019358"}]},"cv_name":"biological_process","definition":"Any process that generates a pyridine nucleotide, a nucleotide characterized by a pyridine derivative as a nitrogen base, from derivatives of them without de novo synthesis.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pyridine nucleotide biosynthetic process","termid":"GO:0019363"},{"relation_name":"is_a","term_name":"nucleotide salvage","termid":"GO:0043173"}],"gene_count":3,"genes_by_uniquename":{"SJAG_00957":null,"SJAG_03298":null,"SJAG_04467":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0055086"}],"interesting_parent_ids":["GO:0008150","GO:0044281","GO:0055086"],"is_obsolete":false,"name":"pyridine nucleotide salvage","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"pyridine nucleotide cycling","type":"exact"}],"termid":"GO:0019365","terms_by_termid":{"GO:0019358":null,"GO:0034355":null}}


id: PR:Q9P4X1
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- pdi4 gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q9P4X1"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"thioredoxin domain-containing protein C959.05c (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC959.05c","synonyms":[{"name":"Spom972h-pdi4","type":"exact"},{"name":"protein disulfide isomerase C959.05c (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:Q9P4X1"}


id: PR:Q9US38
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPAC1039.03 gene.","definition_xrefs":["UniProtKB:Q9US38","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"AB hydrolase superfamily protein C1039.03 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC1039.03","synonyms":[{"name":"Spom972h-SPAC1039.03","type":"exact"}],"termid":"PR:Q9US38"}


id: PBO:0034036
data:
  {"annotation_feature_type":"gene","cv_name":"pubprop_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pubmed_citation","termid":"PBO:0034036"}


id: GO:0031323
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id: PBO:0091376
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"UPF0300 family protein 2","termid":"PBO:0091376"}


id: PATO:0002316
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"Being separate or discrete from other skeletal elements.","definition_xrefs":["PATOC:WD"],"direct_ancestors":[{"relation_name":"is_a","term_name":"structure","termid":"PATO:0000141"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"autogenous","synonyms":[{"name":"free","type":"related"}],"termid":"PATO:0002316"}


id: PBO:0048604
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"GID complex subunit 8 homolog","termid":"PBO:0048604"}


id: PBO:0067500
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 636, pseudogene","termid":"PBO:0067500"}


id: PBO:0081444
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein 300 pseudogene 1","termid":"PBO:0081444"}


id: FYPO:0001216
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the assembly of a SAGA complex onto chromatin is normal (i.e. indistinguishable from wild type).","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal protein complex assembly during vegetative growth","termid":"FYPO:0001215"},{"relation_name":"is_a","term_name":"normal cellular component organization","termid":"FYPO:0006003"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0001312"}],"interesting_parent_ids":["FYPO:0001312","FYPO:0000002","FYPO:0001320","FYPO:0000257"],"is_obsolete":false,"name":"normal SAGA complex assembly","synonyms":[{"name":"normal SAGA complex assembly during mitotic cell cycle","type":"related"},{"name":"normal SAGA complex assembly during vegetative growth","type":"exact"}],"termid":"FYPO:0001216"}


id: PBO:0068810
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 47, pseudogene","termid":"PBO:0068810"}


id: PBO:0064387
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PMS1 homolog 2, mismatch repair system component pseudogene 9","termid":"PBO:0064387"}


id: GO:0015137
data:
  {"annotated_genes":["SJAG_01872"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[87309],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0071913"}]},"cv_name":"molecular_function","definition":"Enables the transfer of citrate, 2-hydroxy-1,2,3-propanetricarboyxlate, from one side of a membrane to the other.","definition_xrefs":["RHEA:33183","GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"tricarboxylic acid transmembrane transporter activity","termid":"GO:0015142"}],"gene_count":1,"genes_by_uniquename":{"SJAG_01872":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0005215"}],"interesting_parent_ids":["GO:0005215","GO:0003674","GO:0022857"],"is_obsolete":false,"name":"citrate transmembrane transporter activity","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["Reactome:R-HSA-433104","TC:2.A.29.7.2"],"synonyms":[{"name":"tricarboxylate transport protein","type":"related"}],"termid":"GO:0015137","terms_by_termid":{"GO:0071913":null}}


id: FYPO:0000679
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A phenotype that affects a developmental process.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"biological process phenotype","termid":"FYPO:0000300"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"developmental process phenotype","synonyms":[{"name":"fission yeast developmental process phenotype","type":"exact"}],"termid":"FYPO:0000679"}


id: FYPO:0005083
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to chromatin at non-coding RNA (ncRNA) genes is normal (i.e. indistinguishable from wild type).","definition_xrefs":["PMID:21151114","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal protein localization to chromatin during vegetative growth","termid":"FYPO:0001509"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0001312"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000257"}],"interesting_parent_ids":["FYPO:0000257","FYPO:0001320","FYPO:0001312","FYPO:0000002","FYPO:0000138"],"is_obsolete":false,"name":"normal protein localization to chromatin at ncRNA gene","synonyms":[{"name":"normal protein localisation to chromatin at ncRNA gene","type":"exact"},{"name":"normal protein localization to chromatin at ncRNA gene during mitotic cell cycle","type":"related"},{"name":"normal protein localization to chromatin at ncRNA gene during vegetative growth","type":"exact"}],"termid":"FYPO:0005083"}


id: FYPO:0002291
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"OBSOLETE. A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the phosphorylation of tyrosine residues of one or more specific proteins is normal (i.e. indistinguishable from wild type) during a cellular response to heat.","definition_xrefs":["PomBase:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete normal protein tyrosine phosphorylation during cellular response to heat (obsolete FYPO:0002291)","synonyms":[{"name":"normal protein tyrosine phosphorylation during cellular response to heat during mitotic cell cycle","type":"related"},{"name":"normal protein tyrosine phosphorylation during cellular response to heat during vegetative growth","type":"exact"}],"termid":"FYPO:0002291"}


id: PBO:0030782
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_growth_on_nickel_cation","termid":"PBO:0030782"}


id: PBO:0057070
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 151a","termid":"PBO:0057070"}


id: PBO:0014618
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nucleoside-triphosphatase involved in SSU-rRNA maturation Fap7 (predicted)","termid":"PBO:0014618"}


id: PBO:0074874
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nucleolar RNA, C/D box 56B","termid":"PBO:0074874"}


id: PBO:0075841
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SSU72 like 2","termid":"PBO:0075841"}


id: PBO:0057938
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MIR3663 host gene","termid":"PBO:0057938"}


id: PBO:0080942
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zygote arrest 1","termid":"PBO:0080942"}


id: GO:0021590
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A developmental process, independent of morphogenetic (shape) change, that is required for the cerebellum to attain its fully functional state. The cerebellum is the portion of the brain in the back of the head between the cerebrum and the pons. The cerebellum controls balance for walking and standing, modulates the force and range of movement and is involved in the learning of motor skills.","definition_xrefs":["GOC:dph","GOC:dgh","ISBN:0838580343","GO_REF:0000021","GOC:jid","GOC:cls"],"direct_ancestors":[{"relation_name":"is_a","term_name":"anatomical structure maturation","termid":"GO:0071695"},{"relation_name":"part_of","term_name":"cerebellum development","termid":"GO:0021549"},{"relation_name":"part_of","term_name":"hindbrain maturation","termid":"GO:0021578"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cerebellum maturation","termid":"GO:0021590"}


id: GO:0046251
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of limonene (4-isopropenyl-1-methyl-cyclohexene), a monocyclic monoterpene.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"limonene metabolic process","termid":"GO:0018923"},{"relation_name":"is_a","term_name":"monoterpene catabolic process","termid":"GO:0043694"},{"relation_name":"is_a","term_name":"olefinic compound catabolic process","termid":"GO:0120256"},{"relation_name":"is_a","term_name":"organic cyclic compound catabolic process","termid":"GO:1901361"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006629"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044248"}],"interesting_parent_ids":["GO:0044248","GO:0006629","GO:0008150"],"is_obsolete":false,"name":"limonene catabolic process","synonyms":[{"name":"limonene breakdown","type":"exact"},{"name":"limonene catabolism","type":"exact"},{"name":"limonene degradation","type":"exact"}],"termid":"GO:0046251"}


id: PBO:0075746
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"signal recognition particle 72 pseudogene 1","termid":"PBO:0075746"}


id: PBO:0043343
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"clock circadian regulator","termid":"PBO:0043343"}


id: GO:0070587
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate, or extent of attachment of a cell to another cell affecting gastrulation.","definition_xrefs":["PMID:19091770","GOC:dsf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of cell-cell adhesion","termid":"GO:0022407"},{"relation_name":"regulates","term_name":"cell-cell adhesion involved in gastrulation","termid":"GO:0070586"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0007155"}],"interesting_parent_ids":["GO:0007155","GO:0008150"],"is_obsolete":false,"name":"regulation of cell-cell adhesion involved in gastrulation","termid":"GO:0070587"}


id: PBO:0042400
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cell division cycle 6","termid":"PBO:0042400"}


id: PBO:0067829
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 5S ribosomal pseudogene 131","termid":"PBO:0067829"}


id: PBO:0081372
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein 211","termid":"PBO:0081372"}


id: GO:0051269
data:
  {"annotated_genes":["SJAG_01869"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[87342],"is_not":false,"summary":null,"term":"GO:0051269"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: alpha-keto ester + 2 H+ (from donor) = (R)-hydroxy ester. Alpha-keto esters are of the form R(1)-CO-CO-O-R(2), where the R groups may be aromatic or aliphatic.","definition_xrefs":["GOC:ai","PMID:15564669"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the aldehyde or oxo group of donors","termid":"GO:0016903"}],"gene_count":1,"genes_by_uniquename":{"SJAG_01869":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016491"],"is_obsolete":false,"name":"alpha-keto ester reductase activity","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["EC:1.2.-.-"],"termid":"GO:0051269","terms_by_termid":{"GO:0051269":null}}


id: GO:1902220
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of intrinsic apoptotic signaling pathway in response to osmotic stress.","definition_xrefs":["PMID:14569084","GOC:mtg_apoptosis","GOC:TermGenie","GOC:BHF","GOC:rl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of intrinsic apoptotic signaling pathway in response to osmotic stress","termid":"GO:1902218"},{"relation_name":"is_a","term_name":"positive regulation of intrinsic apoptotic signaling pathway","termid":"GO:2001244"},{"relation_name":"positively_regulates","term_name":"intrinsic apoptotic signaling pathway in response to osmotic stress","termid":"GO:0008627"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"positively_regulates","termid":"GO:0023052"},{"rel_name":"regulates","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"positive regulation of intrinsic apoptotic signaling pathway in response to osmotic stress","synonyms":[{"name":"activation of intrinsic apoptotic signaling pathway in response to osmotic stress","type":"narrow"},{"name":"up regulation of intrinsic apoptotic signaling pathway in response to osmotic stress","type":"exact"},{"name":"up-regulation of intrinsic apoptotic signaling pathway in response to osmotic stress","type":"exact"},{"name":"upregulation of intrinsic apoptotic signaling pathway in response to osmotic stress","type":"exact"}],"termid":"GO:1902220"}


id: PBO:0001216
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mRNA export receptor Nxt1","termid":"PBO:0001216"}


id: PBO:0063162
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"paired box 7","termid":"PBO:0063162"}


id: PBO:0080326
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"vomeronasal 1 receptor 90 pseudogene","termid":"PBO:0080326"}


id: GO:0070513
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a death domain of a protein. The death domain (DD) is a homotypic protein interaction module composed of a bundle of six alpha-helices. DD bind each other forming oligomers. Some DD-containing proteins are involved in the regulation of apoptosis and inflammation through their activation of caspases and NF-kappaB.","definition_xrefs":["GOC:rl","InterPro:IPR000488","Pfam:PF00531","GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein domain specific binding","termid":"GO:0019904"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0005515"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0005488","GO:0003674","GO:0005515"],"is_obsolete":false,"name":"death domain binding","termid":"GO:0070513"}


id: PBO:0054581
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1983","termid":"PBO:0054581"}


id: GO:0061017
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which a relatively unspecialized cell acquires specialized features of a hepatoblast. A hepatoblast is a cell that retains the ability to divide and proliferate throughout life to provide progenitor cells that can differentiate into hepatocytes and cholangiocytes.","definition_xrefs":["GOC:dph","PMID:15226394"],"direct_ancestors":[{"relation_name":"is_a","term_name":"epithelial cell differentiation","termid":"GO:0030855"},{"relation_name":"is_a","term_name":"stem cell differentiation","termid":"GO:0048863"},{"relation_name":"part_of","term_name":"liver development","termid":"GO:0001889"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"hepatoblast differentiation","termid":"GO:0061017"}


id: PBO:0062481
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 7 subfamily M member 1 pseudogene","termid":"PBO:0062481"}


id: PR:O74548
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- arg1 gene.","definition_xrefs":["PRO:DNx","UniProtKB:O74548"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"acetylornithine aminotransferase, mitochondrial (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC777.09c","synonyms":[{"name":"ACOAT (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-arg1","type":"exact"}],"termid":"PR:O74548"}


id: GO:0061234
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which the anatomical structures of the mesonephric glomerulus are generated and organized. The mesonephric glomerulus is a capillary tuft surrounded by Bowman's capsule in nephrons of the vertebrate mesonephros.","definition_xrefs":["GOC:mtg_kidney_jan10"],"direct_ancestors":[{"relation_name":"is_a","term_name":"glomerulus morphogenesis","termid":"GO:0072102"},{"relation_name":"part_of","term_name":"mesonephric glomerulus development","termid":"GO:0061224"},{"relation_name":"part_of","term_name":"mesonephric nephron morphogenesis","termid":"GO:0061228"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"mesonephric glomerulus morphogenesis","termid":"GO:0061234"}


id: PBO:0029426
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_protein_palmitoylation","termid":"PBO:0029426"}


id: PR:O94494
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- sim4 gene.","definition_xrefs":["PRO:DNx","UniProtKB:O94494"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"centromere protein sim4 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC18E5.03c","synonyms":[{"name":"Spom972h-sim4","type":"exact"},{"name":"silencing in the middle of the centromere protein 4 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:O94494"}


id: PBO:0013843
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"OPT oligopeptide transporter family protein Opt3","termid":"PBO:0013843"}


id: PR:O13786
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- pep7 gene.","definition_xrefs":["PRO:DNx","UniProtKB:O13786"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"vacuolar segregation protein pep7 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC17G6.08","synonyms":[{"name":"Spom972h-pep7","type":"exact"}],"termid":"PR:O13786"}


id: GO:0046122
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving any one of a family of organic molecules consisting of a purine base covalently bonded to a sugar deoxyribose (a deoxyribonucleoside).","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"deoxyribonucleoside metabolic process","termid":"GO:0009120"},{"relation_name":"is_a","term_name":"purine nucleoside metabolic process","termid":"GO:0042278"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0055086"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0044281","GO:0008150","GO:0055086"],"is_obsolete":false,"name":"purine deoxyribonucleoside metabolic process","synonyms":[{"name":"purine deoxyribonucleoside metabolism","type":"exact"}],"termid":"GO:0046122"}


id: FYPO:0000172
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A meiosis phenotype in which meiotic telomere clustering is abnormal. Meiotic telomere clustering is the dynamic reorganization of telomeres in early meiotic prophase, during which meiotic chromosome ends are gathered in a bouquet arrangement at the inner surface of the nuclear envelope proximal to the spindle pole body.","definition_xrefs":["PomBase:mah","GO:0045141"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal homologous chromosome segregation","termid":"FYPO:0004159"},{"relation_name":"is_a","term_name":"localization phenotype during meiotic cell cycle","termid":"FYPO:0006393"},{"relation_name":"is_a","term_name":"abnormal meiotic chromosome organization","termid":"FYPO:0006759"},{"relation_name":"is_a","term_name":"abnormal telomere localization","termid":"FYPO:0007418"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0000641"},{"rel_name":"is_a","termid":"FYPO:0000631"},{"rel_name":"part_of","termid":"FYPO:0000631"},{"rel_name":"part_of","termid":"FYPO:0005447"},{"rel_name":"part_of","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0000631","FYPO:0000138","FYPO:0005447","FYPO:0000641","FYPO:0000002","FYPO:0001985"],"is_obsolete":false,"name":"abnormal meiotic telomere clustering","synonyms":[{"name":"abnormal bouquet formation","type":"exact"}],"termid":"FYPO:0000172"}


id: PBO:0078579
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tripartite motif containing 53B, pseudogene","termid":"PBO:0078579"}


id: GO:0097265
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 5-HETE + NADP+ = 5-oxo-ETE + NADPH + H+.","definition_xrefs":["GOC:mw","PMID:1326548"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor","termid":"GO:0016616"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016491"],"is_obsolete":false,"name":"5(S)-hydroxyeicosatetraenoic acid dehydrogenase activity","secondary_identifiers":["Reactome:R-HSA-2161776"],"synonyms":[{"name":"5(S)-HETE dehydrogenase activity","type":"exact"},{"name":"5-HETE dehydrogenase activity","type":"exact"},{"name":"5-hydroxy-eicosatetraenoic acid dehydrogenase activity","type":"exact"}],"termid":"GO:0097265"}


id: PBO:0086826
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Putative protein of unknown function; YNL165W is not an essential gene","termid":"PBO:0086826"}


id: PBO:0068701
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U4 small nuclear 82, pseudogene","termid":"PBO:0068701"}


id: PBO:0065629
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protein tyrosine phosphatase non-receptor type 7","termid":"PBO:0065629"}


id: PBO:0071359
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L29 pseudogene 18","termid":"PBO:0071359"}


id: GO:0004988
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Combining with an opioid to initiate a change in cell activity, with the pharmacological characteristics of mu-opioid receptors, including high affinity for enkephalins and beta-endorphin but low affinity for dynorphins.","definition_xrefs":["IUPHAR_RECEPTOR:319"],"gene_count":0,"genotype_count":0,"name":"obsolete mu-opioid receptor activity (obsolete GO:0004988)","secondary_identifiers":["Wikipedia:Mu_Opioid_receptor"],"synonyms":[{"name":"mu-opioid receptor activity","type":"exact"}],"termid":"GO:0004988"}


id: GO:0060148
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that increases the frequency, rate or extent of the inactivation of gene expression by a posttranscriptional mechanism.","definition_xrefs":["GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of biological process","termid":"GO:0048518"},{"relation_name":"is_a","term_name":"regulation of post-transcriptional gene silencing","termid":"GO:0060147"},{"relation_name":"positively_regulates","term_name":"post-transcriptional gene silencing","termid":"GO:0016441"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0008150","GO:0010467"],"is_obsolete":false,"name":"positive regulation of post-transcriptional gene silencing","synonyms":[{"name":"positive regulation of posttranscriptional gene silencing","type":"exact"}],"termid":"GO:0060148"}


id: PBO:0006549
data:
  {"annotation_feature_type":"gene","cv_name":"species_dist","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"orthologous to S. cerevisiae YLL013C","termid":"PBO:0006549"}


id: GO:0061519
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process of regulating the proliferation and elimination of macrophage cells such that the total number of myeloid cells within a whole or part of an organism is stable over time in the absence of an outside stimulus.","definition_xrefs":["GOC:dph","PMID:21727904"],"direct_ancestors":[{"relation_name":"is_a","term_name":"leukocyte homeostasis","termid":"GO:0001776"},{"relation_name":"is_a","term_name":"myeloid cell homeostasis","termid":"GO:0002262"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"macrophage homeostasis","termid":"GO:0061519"}


id: PBO:0003350
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"palmitoyl protein thioesterase-dolichol pyrophosphate phosphatase fusion 1","termid":"PBO:0003350"}


id: GO:0043683
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The assembly from its constituent parts of a type IV pilus.","definition_xrefs":["GOC:jl","PMID:31784891","GOC:ml"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pilus assembly","termid":"GO:0009297"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0044085"}],"interesting_parent_ids":["GO:0044085","GO:0008150"],"is_obsolete":false,"name":"type IV pilus assembly","synonyms":[{"name":"type IV fimbria assembly","type":"exact"},{"name":"type IV fimbria biogenesis","type":"exact"},{"name":"type IV fimbriae assembly","type":"exact"},{"name":"type IV fimbriae biogenesis","type":"exact"},{"name":"type IV fimbrial assembly","type":"exact"},{"name":"type IV fimbrial biogenesis","type":"exact"},{"name":"type IV fimbrium assembly","type":"exact"},{"name":"type IV fimbrium biogenesis","type":"exact"},{"name":"type IV pilus biogenesis","type":"related"}],"termid":"GO:0043683"}


id: PBO:0043333
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"calmin","termid":"PBO:0043333"}


id: GO:0045486
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: naringenin + 2-oxoglutarate + O2 = dihydrokaempferol + succinate + CO2.","definition_xrefs":["EC:1.14.11.9"],"direct_ancestors":[{"relation_name":"is_a","term_name":"2-oxoglutarate-dependent dioxygenase activity","termid":"GO:0016706"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016491"],"is_obsolete":false,"name":"naringenin 3-dioxygenase activity","secondary_identifiers":["RHEA:18621","MetaCyc:NARINGENIN-3-DIOXYGENASE-RXN"],"synonyms":[{"name":"(2S)-flavanone 3-hydroxylase activity","type":"related"},{"name":"flavanone 3-beta-hydroxylase activity","type":"related"},{"name":"flavanone 3-dioxygenase activity","type":"related"},{"name":"flavanone 3-hydroxylase activity","type":"related"},{"name":"flavanone 3beta-hydroxylase activity","type":"related"},{"name":"flavanone synthase I activity","type":"related"},{"name":"flavanone,2-oxoglutarate:oxygen oxidoreductase (3-hydroxylating)","type":"related"},{"name":"naringenin 3-hydroxylase activity","type":"related"},{"name":"naringenin,2-oxoglutarate:oxygen oxidoreductase (3-hydroxylating) activity","type":"related"}],"termid":"GO:0045486"}


id: PBO:0084011
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Glycogen phosphorylase required for the mobilization of glycogen; non-essential; regulated by cyclic AMP-mediated phosphorylation; phosphorylation by Cdc28p may coordinately regulate carbohydrate metabolism and the cell cycle; expression is regulated by stress-response elements and by the HOG MAP kinase pathway","termid":"PBO:0084011"}


id: PBO:0058710
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 6838","termid":"PBO:0058710"}


id: GO:0060878
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The morphogenetic process in which an epithelial sheet bends along a linear axis and gives rise to a pouch that will form a semicircular canal.","definition_xrefs":["GOC:dph","GOC:tb","GOC:sdb_2009"],"direct_ancestors":[{"relation_name":"is_a","term_name":"embryonic morphogenesis","termid":"GO:0048598"},{"relation_name":"is_a","term_name":"morphogenesis of an epithelial fold","termid":"GO:0060571"},{"relation_name":"part_of","term_name":"semicircular canal formation","termid":"GO:0060876"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"pouch outgrowth involved in semicircular canal formation","termid":"GO:0060878"}


id: PBO:0077426
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transmembrane protein 163","termid":"PBO:0077426"}


id: PBO:0045355
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dolichyl-phosphate N-acetylglucosaminephosphotransferase 1","termid":"PBO:0045355"}


id: GO:0042391
data:
  {"annotated_genes":["SJAG_02883","SJAG_03002","SJAG_01541"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[85009,92431],"is_not":false,"summary":null,"term":"GO:0042391"},{"annotations":[111878],"is_not":false,"rel_names":["regulates","is_a"],"summary":null,"term":"GO:0003254"}]},"cv_name":"biological_process","definition":"Any process that modulates the establishment or extent of a membrane potential, the electric potential existing across any membrane arising from charges in the membrane itself and from the charges present in the media on either side of the membrane.","definition_xrefs":["GOC:jl","GOC:tb","ISBN:0198506732","GOC:mtg_cardio"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of biological quality","termid":"GO:0065008"}],"gene_count":3,"genes_by_uniquename":{"SJAG_01541":null,"SJAG_02883":null,"SJAG_03002":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of membrane potential","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0042391","terms_by_termid":{"GO:0003254":null,"GO:0042391":null}}


id: FYPO:0004584
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which the first meiotic nuclear division is arrested under conditions where arrest does not normally occur, and in which arrested cells contain four spindle pole bodies. Cells may contain one or two spindles, but the nucleus does not divide.","definition_xrefs":["PMID:9763441","PomBase:mah"],"direct_ancestors":[{"relation_name":"has_part","term_name":"spindle pole bodies present in increased numbers during meiosis","termid":"FYPO:0004609"},{"relation_name":"is_a","term_name":"abnormally arrested meiosis I","termid":"FYPO:0002817"},{"relation_name":"is_a","term_name":"spindle pole bodies present in increased numbers during meiosis","termid":"FYPO:0004609"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"has_part","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000631"},{"rel_name":"output_of","termid":"FYPO:0000054"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"output_of","termid":"FYPO:0000631"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000002","FYPO:0000631","FYPO:0000054","FYPO:0005447"],"is_obsolete":false,"name":"abnormally arrested meiosis I with four spindle pole bodies","synonyms":[{"name":"abnormally arrested first meiotic nuclear division with four spindle pole bodies","type":"exact"},{"name":"abnormally arrested meiosis I with duplicated spindle pole bodies","type":"exact"},{"name":"abnormally arrested meiosis I with four SPBs","type":"exact"},{"name":"cell cycle arrest in meiosis I with four spindle pole bodies","type":"exact"}],"termid":"FYPO:0004584"}


id: PBO:0060339
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"myosin VC","termid":"PBO:0060339"}


id: PBO:0042286
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CD2 molecule","termid":"PBO:0042286"}


id: GO:0015699
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The directed movement of antimonite into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.","definition_xrefs":["GOC:krc"],"direct_ancestors":[{"relation_name":"is_a","term_name":"inorganic anion transport","termid":"GO:0015698"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0008150","GO:0051179","GO:0006810"],"is_obsolete":false,"name":"antimonite transport","termid":"GO:0015699"}


id: PBO:0071983
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein S6 pseudogene 12","termid":"PBO:0071983"}


id: SO:0000550
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A chromosome structural variation whereby either a chromosome exists in addition to the normal chromosome complement or is lacking.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"chromosome_structure_variation","termid":"SO:1000183"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"aneuploid_chromosome","synonyms":[{"name":"aneuploid chromosome","type":"exact"}],"termid":"SO:0000550"}


id: GO:0030691
data:
  {"annotated_genes":["SJAG_00311","SJAG_01494","SJAG_04346"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[83398,87548,108425],"is_not":false,"summary":null,"term":"GO:0030691"}]},"cv_name":"cellular_component","definition":"A heterodimer associated with 66S preribosomes; predominantly nucleoplasmic, but also locates to the nucleolus; involved in ribosomal large subunit biogenesis.","definition_xrefs":["PMID:12446671"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Noc complex","termid":"GO:0030689"},{"relation_name":"part_of","term_name":"preribosome, large subunit precursor","termid":"GO:0030687"}],"gene_count":3,"genes_by_uniquename":{"SJAG_00311":null,"SJAG_01494":null,"SJAG_04346":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005634"},{"rel_name":"part_of","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0030684"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005634","GO:0005575","GO:0032991","GO:0030684"],"is_obsolete":false,"name":"Noc2p-Noc3p complex","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0030691","terms_by_termid":{"GO:0030691":null}}


id: PBO:0039191
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"akirin 1 pseudogene 2","termid":"PBO:0039191"}


id: GO:0045296
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to cadherin, a type I membrane protein involved in cell adhesion.","definition_xrefs":["GOC:bf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell adhesion molecule binding","termid":"GO:0050839"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005515"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005488"}],"interesting_parent_ids":["GO:0003674","GO:0005515","GO:0005488"],"is_obsolete":false,"name":"cadherin binding","termid":"GO:0045296"}


id: GO:1990178
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A protein-DNA complex that consists of HU heterodimers (an alpha and a beta chain) assembled into octamers along DNA. HU binds to double-stranded DNA in a structure- and sequence-specific manner and bends the DNA into a nucleosome-like structure.","definition_xrefs":["GOC:bhm","PMID:17360520"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein-DNA complex","termid":"GO:0032993"},{"relation_name":"is_a","term_name":"DNA bending complex","termid":"GO:1990104"},{"relation_name":"part_of","term_name":"bacterial nucleoid","termid":"GO:0043590"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0032991","GO:0005575"],"is_obsolete":false,"name":"HU-DNA complex","synonyms":[{"name":"HU complex","type":"broad"}],"termid":"GO:1990178"}


id: GO:1900488
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of [2Fe-2S] cluster assembly.","definition_xrefs":["GOC:TermGenie","GOC:mengo_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of [2Fe-2S] cluster assembly","termid":"GO:1900487"},{"relation_name":"is_a","term_name":"negative regulation of iron-sulfur cluster assembly","termid":"GO:1903330"},{"relation_name":"negatively_regulates","term_name":"[2Fe-2S] cluster assembly","termid":"GO:0044571"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0016226"},{"rel_name":"negatively_regulates","termid":"GO:0016226"},{"rel_name":"regulates","termid":"GO:0044085"}],"interesting_parent_ids":["GO:0008150","GO:0016226","GO:0044085"],"is_obsolete":false,"name":"negative regulation of [2Fe-2S] cluster assembly","synonyms":[{"name":"down regulation of 2Fe-2S cluster assembly","type":"exact"},{"name":"down regulation of [2Fe-2S] cluster assembly","type":"exact"},{"name":"down regulation of [2Fe-2S] cluster biosynthetic process","type":"related"},{"name":"down-regulation of 2Fe-2S cluster assembly","type":"exact"},{"name":"down-regulation of [2Fe-2S] cluster assembly","type":"exact"},{"name":"down-regulation of [2Fe-2S] cluster biosynthetic process","type":"related"},{"name":"downregulation of 2Fe-2S cluster assembly","type":"exact"},{"name":"downregulation of [2Fe-2S] cluster assembly","type":"exact"},{"name":"downregulation of [2Fe-2S] cluster biosynthetic process","type":"related"},{"name":"inhibition of 2Fe-2S cluster assembly","type":"narrow"},{"name":"inhibition of [2Fe-2S] cluster assembly","type":"narrow"},{"name":"inhibition of [2Fe-2S] cluster biosynthetic process","type":"related"},{"name":"negative regulation of 2Fe-2S cluster assembly","type":"exact"},{"name":"negative regulation of [2Fe-2S] cluster biosynthetic process","type":"related"}],"termid":"GO:1900488"}


id: GO:1904014
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a serotonin stimulus.","definition_xrefs":["GOC:TermGenie","GO_REF:0000071","PMID:1505525"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to organic cyclic compound","termid":"GO:0014070"},{"relation_name":"is_a","term_name":"response to monoamine","termid":"GO:0071867"},{"relation_name":"is_a","term_name":"response to oxygen-containing compound","termid":"GO:1901700"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"response to serotonin","termid":"GO:1904014"}


id: FYPO:0006519
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the occurrence of protein degradation is decreased during G1 phase of the mitotic cell cycle.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased protein degradation during vegetative growth","termid":"FYPO:0000846"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0002274"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0005447","FYPO:0001320","FYPO:0001985","FYPO:0002274"],"is_obsolete":false,"name":"decreased protein degradation during mitotic G1 phase","synonyms":[{"name":"decreased protein breakdown during mitotic G1 phase","type":"exact"},{"name":"decreased protein catabolic process during mitotic G1 phase","type":"exact"},{"name":"decreased protein catabolism during mitotic G1 phase","type":"exact"},{"name":"decreased protein degradation during G1 phase during mitotic cell cycle","type":"related"},{"name":"decreased protein degradation during mitotic G1 phase during vegetative growth","type":"exact"},{"name":"reduced protein degradation during mitotic G1 phase","type":"exact"}],"termid":"FYPO:0006519"}


id: PBO:0067642
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 815, pseudogene","termid":"PBO:0067642"}


id: PBO:0030846
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abolished_protein_localization_to_cell_tip,_with_protein_distributed_in_plasma_membrane_or_cortex","termid":"PBO:0030846"}


id: PBO:0056523
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"membrane bound transcription factor peptidase, site 2","termid":"PBO:0056523"}


id: GO:0001818
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the rate of production of a cytokine.","definition_xrefs":["ISBN:0781735149","GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of cytokine production","termid":"GO:0001817"},{"relation_name":"is_a","term_name":"negative regulation of gene expression","termid":"GO:0010629"},{"relation_name":"is_a","term_name":"negative regulation of multicellular organismal process","termid":"GO:0051241"},{"relation_name":"negatively_regulates","term_name":"cytokine production","termid":"GO:0001816"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"negatively_regulates","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0008150","GO:0010467"],"is_obsolete":false,"name":"negative regulation of cytokine production","secondary_identifiers":["GO:0050710","GO:0042036"],"synonyms":[{"name":"down regulation of cytokine biosynthetic process","type":"exact"},{"name":"down regulation of cytokine production","type":"exact"},{"name":"down-regulation of cytokine biosynthetic process","type":"exact"},{"name":"down-regulation of cytokine production","type":"exact"},{"name":"downregulation of cytokine biosynthetic process","type":"exact"},{"name":"downregulation of cytokine production","type":"exact"},{"name":"inhibition of cytokine biosynthetic process","type":"narrow"},{"name":"inhibition of cytokine production","type":"narrow"},{"name":"negative regulation of cytokine anabolism","type":"exact"},{"name":"negative regulation of cytokine biosynthesis","type":"exact"},{"name":"negative regulation of cytokine biosynthetic process","type":"narrow"},{"name":"negative regulation of cytokine formation","type":"exact"},{"name":"negative regulation of cytokine secretion","type":"narrow"},{"name":"negative regulation of cytokine synthesis","type":"exact"}],"termid":"GO:0001818"}


id: PBO:0043501
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"contactin associated protein 2","termid":"PBO:0043501"}


id: PBO:0075516
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SAM pointed domain containing ETS transcription factor","termid":"PBO:0075516"}


id: PBO:0043899
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cysteine rich protein 3","termid":"PBO:0043899"}


id: GO:0032170
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A tight ring-shaped structure that forms in the division plane at the junction between the mother cell and a pseudohyphal projection; composed of septins as well as septin-associated proteins.","definition_xrefs":["GOC:krc","GOC:mah","PMID:16151244"],"direct_ancestors":[{"relation_name":"is_a","term_name":"septin ring","termid":"GO:0005940"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"part_of","termid":"GO:0005938"}],"interesting_parent_ids":["GO:0005938","GO:0005575","GO:0005737"],"is_obsolete":false,"name":"pseudohyphal septin ring","termid":"GO:0032170"}


id: PBO:0077026
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"thymocyte selection associated","termid":"PBO:0077026"}


id: PBO:0066622
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RIC3 acetylcholine receptor chaperone","termid":"PBO:0066622"}


id: PR:Q8TFG4
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPAPB18E9.04c gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q8TFG4"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized protein PB18E9.04c (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAPB18E9.04c","synonyms":[{"name":"Spom972h-SPAPB18E9.04c","type":"exact"}],"termid":"PR:Q8TFG4"}


id: PBO:0042369
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CD177 molecule pseudogene 1","termid":"PBO:0042369"}


id: GO:0018930
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving 3-methylquinoline, C10H9N, an aromatic compound composed of a benzene ring and a heterocyclic N-containing ring.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular aromatic compound metabolic process","termid":"GO:0006725"},{"relation_name":"is_a","term_name":"heterocycle metabolic process","termid":"GO:0046483"},{"relation_name":"is_a","term_name":"organic cyclic compound metabolic process","termid":"GO:1901360"},{"relation_name":"is_a","term_name":"organonitrogen compound metabolic process","termid":"GO:1901564"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"3-methylquinoline metabolic process","secondary_identifiers":["UM-BBD_pathwayID:mqn"],"synonyms":[{"name":"3-methylquinoline metabolism","type":"exact"}],"termid":"GO:0018930"}


id: GO:0030391
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of fructosamine, a fructose molecule containing an amino group in place of a hydroxyl group.","definition_xrefs":["ISBN:0192801023","GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"fructosamine metabolic process","termid":"GO:0030389"},{"relation_name":"is_a","term_name":"amino sugar biosynthetic process","termid":"GO:0046349"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"fructosamine biosynthetic process","synonyms":[{"name":"fructosamine anabolism","type":"exact"},{"name":"fructosamine biosynthesis","type":"exact"},{"name":"fructosamine formation","type":"exact"},{"name":"fructosamine synthesis","type":"exact"}],"termid":"GO:0030391"}


id: PBO:0030254
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_cellular_trehalose_level_during_vegetative_growth","termid":"PBO:0030254"}


id: PBO:0039883
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ARHGAP42 antisense RNA 1","termid":"PBO:0039883"}


id: PR:O74888
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- bxi1 gene.","definition_xrefs":["UniProtKB:O74888","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Bax inhibitor 1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC576.04","synonyms":[{"name":"BH3 domain-containing protein bxi1 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-bxi1","type":"exact"}],"termid":"PR:O74888"}


id: GO:0002665
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate, or extent of T cell tolerance induction.","definition_xrefs":["GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of tolerance induction","termid":"GO:0002644"},{"relation_name":"is_a","term_name":"regulation of T cell tolerance induction","termid":"GO:0002664"},{"relation_name":"negatively_regulates","term_name":"T cell tolerance induction","termid":"GO:0002517"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of T cell tolerance induction","synonyms":[{"name":"down regulation of T cell tolerance induction","type":"exact"},{"name":"down-regulation of T cell tolerance induction","type":"exact"},{"name":"downregulation of T cell tolerance induction","type":"exact"},{"name":"inhibition of T cell tolerance induction","type":"narrow"},{"name":"negative regulation of T lymphocyte tolerance induction","type":"exact"},{"name":"negative regulation of T-cell tolerance induction","type":"exact"},{"name":"negative regulation of T-lymphocyte tolerance induction","type":"exact"}],"termid":"GO:0002665"}


id: PBO:0042480
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cadherin 6","termid":"PBO:0042480"}


id: PR:O94616
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- rpc40 gene.","definition_xrefs":["PRO:DNx","UniProtKB:O94616"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DNA-directed RNA polymerases I and III subunit RPAC1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC1289.07c","synonyms":[{"name":"AC40 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"DNA-directed RNA polymerases I and III 40 kDa polypeptide (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"RNA polymerases I and III subunit AC1 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"RPC39 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-rpc40","type":"exact"}],"termid":"PR:O94616"}


id: GO:0141090
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: protein phospho-serine + inositol 5-triphosphate pentakisphosphate = protein diphospho-serine + inositol 5-diphosphate pentakisphosphate.","definition_xrefs":["RHEA:64104","PMID:36603579"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phosphotransferase activity, phosphate group as acceptor","termid":"GO:0016776"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016740","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"protein serine pyrophosphorylase activity","synonyms":[{"name":"protein serine pyrophosphatase activity","type":"related"}],"termid":"GO:0141090"}


id: PBO:0068754
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U5E small nuclear 9, pseudogene","termid":"PBO:0068754"}


id: PBO:0073558
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SHC adaptor protein 1 pseudogene 2","termid":"PBO:0073558"}


id: GO:1900939
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of (Z)-nonadeca-1,14-diene metabolic process.","definition_xrefs":["GOC:mengo_curators","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of olefin metabolic process","termid":"GO:1900909"},{"relation_name":"is_a","term_name":"regulation of (Z)-nonadeca-1,14-diene metabolic process","termid":"GO:1900938"},{"relation_name":"negatively_regulates","term_name":"(Z)-nonadeca-1,14-diene metabolic process","termid":"GO:1900878"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of (Z)-nonadeca-1,14-diene metabolic process","synonyms":[{"name":"down regulation of (Z)-nonadeca-1,14-diene metabolic process","type":"exact"},{"name":"down regulation of (Z)-nonadeca-1,14-diene metabolism","type":"exact"},{"name":"down-regulation of (Z)-nonadeca-1,14-diene metabolic process","type":"exact"},{"name":"down-regulation of (Z)-nonadeca-1,14-diene metabolism","type":"exact"},{"name":"downregulation of (Z)-nonadeca-1,14-diene metabolic process","type":"exact"},{"name":"downregulation of (Z)-nonadeca-1,14-diene metabolism","type":"exact"},{"name":"inhibition of (Z)-nonadeca-1,14-diene metabolic process","type":"narrow"},{"name":"inhibition of (Z)-nonadeca-1,14-diene metabolism","type":"exact"},{"name":"negative regulation of (Z)-nonadeca-1,14-diene metabolism","type":"exact"}],"termid":"GO:1900939"}


id: FYPO:0000467
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"OBSOLETE. A cellular process phenotype in which the occurrence of invasive growth is increased.","definition_xrefs":["PomBase:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete increased invasive growth (obsolete FYPO:0000467)","synonyms":[{"name":"invasive growth: increased","type":"related"}],"termid":"FYPO:0000467"}


id: GO:0070516
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A protein complex formed by the association of the cyclin-dependent protein kinase activating kinase (CAK) holoenzyme complex with ERCC2.","definition_xrefs":["PMID:8692841","PMID:8692842"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nuclear protein-containing complex","termid":"GO:0140513"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005634"},{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005634","GO:0032991","GO:0005575"],"is_obsolete":false,"name":"CAK-ERCC2 complex","synonyms":[{"name":"cyclin-dependent protein kinase activating kinase holoenzyme-ERCC2 complex","type":"exact"}],"termid":"GO:0070516"}


id: PBO:0090361
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ubiquitin-protein ligase E3, unknown specificity","termid":"PBO:0090361"}


id: PBO:0091962
data:
  {"annotation_feature_type":"gene","cv_name":"complementation","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"functionally complements a double deletion of S. cerevisiae CYC1 and CYC7","termid":"PBO:0091962"}


id: PBO:0058690
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 6818","termid":"PBO:0058690"}


id: GO:1905809
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of synapse organization.","definition_xrefs":["GO_REF:0000058","GOC:TermGenie","PMID:27779093"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of synapse organization","termid":"GO:0050807"},{"relation_name":"is_a","term_name":"negative regulation of cellular component organization","termid":"GO:0051129"},{"relation_name":"negatively_regulates","term_name":"synapse organization","termid":"GO:0050808"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of synapse organization","synonyms":[{"name":"down regulation of synapse development","type":"exact"},{"name":"down regulation of synapse morphogenesis","type":"related"},{"name":"down regulation of synapse organisation","type":"exact"},{"name":"down regulation of synapse organization","type":"exact"},{"name":"down regulation of synapse organization and biogenesis","type":"related"},{"name":"down-regulation of synapse development","type":"exact"},{"name":"down-regulation of synapse morphogenesis","type":"related"},{"name":"down-regulation of synapse organisation","type":"exact"},{"name":"down-regulation of synapse organization","type":"exact"},{"name":"down-regulation of synapse organization and biogenesis","type":"related"},{"name":"downregulation of synapse development","type":"exact"},{"name":"downregulation of synapse morphogenesis","type":"related"},{"name":"downregulation of synapse organisation","type":"exact"},{"name":"downregulation of synapse organization","type":"exact"},{"name":"downregulation of synapse organization and biogenesis","type":"related"},{"name":"inhibition of synapse development","type":"narrow"},{"name":"inhibition of synapse morphogenesis","type":"related"},{"name":"inhibition of synapse organisation","type":"narrow"},{"name":"inhibition of synapse organization","type":"narrow"},{"name":"inhibition of synapse organization and biogenesis","type":"related"},{"name":"negative regulation of synapse development","type":"exact"},{"name":"negative regulation of synapse morphogenesis","type":"related"},{"name":"negative regulation of synapse organisation","type":"exact"},{"name":"negative regulation of synapse organization and biogenesis","type":"related"}],"termid":"GO:1905809"}


id: GO:1901116
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving cephamycin C.","definition_xrefs":["GOC:yaf","GOC:TermGenie","UniPathway:UPA00183"],"direct_ancestors":[{"relation_name":"is_a","term_name":"sulfur compound metabolic process","termid":"GO:0006790"},{"relation_name":"is_a","term_name":"beta-lactam antibiotic metabolic process","termid":"GO:0030653"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0006790"}],"interesting_parent_ids":["GO:0044281","GO:0008150","GO:0006790"],"is_obsolete":false,"name":"cephamycin C metabolic process","synonyms":[{"name":"cephamycin C metabolism","type":"exact"}],"termid":"GO:1901116"}


id: FYECO:0000205
data:
  {"annotation_feature_type":"gene","cv_name":"fission_yeast_phenotype_condition","definition":"An experimental condition in which sodium sulfate (Na2SO4) was added to the medium or assay buffer in excess compared to standard medium or assay buffers.","definition_xrefs":["PomBase:al"],"direct_ancestors":[{"relation_name":"is_a","term_name":"grouping excess","termid":"FYECO:0000109"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"+ Na2SO4","synonyms":[{"name":"sodium sulfate added","type":"exact"}],"termid":"FYECO:0000205"}


id: PBO:0031801
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_mitotic_G2/M_phase_transition","termid":"PBO:0031801"}


id: GO:1900385
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of flavonol biosynthetic process.","definition_xrefs":["GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of flavonoid biosynthetic process","termid":"GO:0009964"},{"relation_name":"is_a","term_name":"regulation of flavonol biosynthetic process","termid":"GO:1900384"},{"relation_name":"negatively_regulates","term_name":"flavonol biosynthetic process","termid":"GO:0051555"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of flavonol biosynthetic process","synonyms":[{"name":"down regulation of flavonol biosynthetic process","type":"exact"},{"name":"down-regulation of flavonol biosynthetic process","type":"exact"},{"name":"downregulation of flavonol biosynthetic process","type":"exact"},{"name":"inhibition of flavonol biosynthetic process","type":"narrow"}],"termid":"GO:1900385"}


id: GO:2000404
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of T cell migration.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of lymphocyte migration","termid":"GO:2000401"},{"relation_name":"regulates","term_name":"T cell migration","termid":"GO:0072678"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of T cell migration","synonyms":[{"name":"regulation of T lymphocyte migration","type":"exact"},{"name":"regulation of T-cell migration","type":"exact"},{"name":"regulation of T-lymphocyte migration","type":"exact"}],"termid":"GO:2000404"}


id: GO:1902021
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of bacterial-type flagellum-dependent cell motility.","definition_xrefs":["GOC:jl","GOC:cilia","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of cell motility","termid":"GO:2000145"},{"relation_name":"regulates","term_name":"bacterial-type flagellum-dependent cell motility","termid":"GO:0071973"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of bacterial-type flagellum-dependent cell motility","synonyms":[{"name":"regulation of bacterial-type flagellar cell motility","type":"related"},{"name":"regulation of bacterial-type flagellum cell motility","type":"exact"},{"name":"regulation of flagellin-based flagellar cell motility","type":"exact"}],"termid":"GO:1902021"}


id: PBO:0016086
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"WD repeat protein Pwp1 (predicted)","termid":"PBO:0016086"}


id: PBO:0044417
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cytochrome P450 family 2 subfamily U member 1","termid":"PBO:0044417"}


id: PBO:0086877
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Putative transcriptional activator; interacts with G1-specific transcription factor MBF and G1-specific promoters; MSA2 has a paralog, MSA1, that arose from the whole genome duplication","termid":"PBO:0086877"}


id: PBO:0091496
data:
  {"annotation_feature_type":"gene","cv_name":"misc","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"monogenic PPCDC","termid":"PBO:0091496"}


id: GO:2000202
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of ribosomal subunit export from nucleus.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of nucleocytoplasmic transport","termid":"GO:0046824"},{"relation_name":"is_a","term_name":"positive regulation of ribonucleoprotein complex localization","termid":"GO:2000199"},{"relation_name":"is_a","term_name":"regulation of ribosomal subunit export from nucleus","termid":"GO:2000200"},{"relation_name":"positively_regulates","term_name":"ribosomal subunit export from nucleus","termid":"GO:0000054"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"positively_regulates","termid":"GO:0006913"},{"rel_name":"positively_regulates","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0006913"}],"interesting_parent_ids":["GO:0006913","GO:0006810","GO:0008150"],"is_obsolete":false,"name":"positive regulation of ribosomal subunit export from nucleus","synonyms":[{"name":"positive regulation of ribosomal subunit export from cell nucleus","type":"exact"},{"name":"positive regulation of ribosomal subunit export out of nucleus","type":"exact"},{"name":"positive regulation of ribosomal subunit transport from nucleus to cytoplasm","type":"exact"},{"name":"positive regulation of ribosomal subunit-nucleus export","type":"exact"},{"name":"positive regulation of ribosome export from nucleus","type":"related"}],"termid":"GO:2000202"}


id: internal:narrow
data:
  {"annotation_feature_type":"gene","cv_name":"synonym_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"narrow","termid":"internal:narrow"}


id: PATO:0001460
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A sensitivity of a process inhering in a biological process by virtue of the process unfolding in a location without oxygen.","definition_xrefs":["PATOC:GVG"],"direct_ancestors":[{"relation_name":"is_a","term_name":"sensitivity of a process to oxygen","termid":"PATO:0001458"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"anaerobic (for occurrence)","termid":"PATO:0001460"}


id: PBO:0079789
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"UDP glucuronosyltransferase family 1 member A10","termid":"PBO:0079789"}


id: PBO:0083394
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Dubious open reading frame; unlikely to encode a functional protein, based on available experimental and comparative sequence data; partially overlaps ORF GEM1/YAL048C","termid":"PBO:0083394"}


id: PBO:0028977
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_growth_on_nitrite","termid":"PBO:0028977"}


id: GO:0097316
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an N-acetyl-D-glucosamine stimulus.","definition_xrefs":["PMID:21700702","GOC:di"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular response to organic substance","termid":"GO:0071310"},{"relation_name":"is_a","term_name":"response to N-acetyl-D-glucosamine","termid":"GO:0097315"},{"relation_name":"is_a","term_name":"cellular response to oxygen-containing compound","termid":"GO:1901701"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cellular response to N-acetyl-D-glucosamine","termid":"GO:0097316"}


id: GO:2000328
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of T-helper 17 cell lineage commitment.","definition_xrefs":["GOC:BHF","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of cell fate commitment","termid":"GO:0010453"},{"relation_name":"is_a","term_name":"regulation of T-helper 17 cell differentiation","termid":"GO:2000319"},{"relation_name":"regulates","term_name":"T-helper 17 cell lineage commitment","termid":"GO:0072540"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of T-helper 17 cell lineage commitment","synonyms":[{"name":"regulation of T-helper 17 cell fate commitment","type":"exact"},{"name":"regulation of Th17 cell lineage commitment","type":"exact"},{"name":"regulation of Th17 fate commitment","type":"exact"}],"termid":"GO:2000328"}


id: PBO:0060582
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NBPF member 19","termid":"PBO:0060582"}


id: GO:0071906
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a CRD (context dependent regulatory) domain, a domain of about 130 residues that is the most divergent region among the LEF/TCF proteins.","definition_xrefs":["PMID:19460168","GOC:yaf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein domain specific binding","termid":"GO:0019904"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005515"}],"interesting_parent_ids":["GO:0005488","GO:0003674","GO:0005515"],"is_obsolete":false,"name":"CRD domain binding","synonyms":[{"name":"context dependent regulatory domain binding","type":"exact"}],"termid":"GO:0071906"}


id: GO:0071163
data:
  {"annotated_genes":["SJAG_02607","SJAG_00327","SJAG_04879","SJAG_02667","SJAG_01823","SJAG_02908","SJAG_04995"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[105880,109597,111462,103231],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0140529"},{"annotations":[95166,106505,85957],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1902977"}]},"cv_name":"biological_process","definition":"The aggregation, arrangement and bonding together of a set of components to form the DNA replication preinitiation complex, a protein-DNA complex that is assembled at DNA replication origins as part of initiation of DNA replication. The complex consists of proteins that initiate the DNA binding, melt the helix and enable helicase activity.","definition_xrefs":["PMID:28209641","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell cycle process","termid":"GO:0022402"},{"relation_name":"is_a","term_name":"protein-DNA complex assembly","termid":"GO:0065004"},{"relation_name":"part_of","term_name":"nuclear DNA replication","termid":"GO:0033260"}],"gene_count":7,"genes_by_uniquename":{"SJAG_00327":null,"SJAG_01823":null,"SJAG_02607":null,"SJAG_02667":null,"SJAG_02908":null,"SJAG_04879":null,"SJAG_04995":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0006260"},{"rel_name":"part_of","termid":"GO:0044085"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0007049"},{"rel_name":"part_of","termid":"GO:0006259"},{"rel_name":"is_a","termid":"GO:0065003"}],"interesting_parent_ids":["GO:0007049","GO:0006259","GO:0065003","GO:0008150","GO:0044085","GO:0006260"],"is_obsolete":false,"name":"DNA replication preinitiation complex assembly","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["GO:1902293","GO:1902316"],"synonyms":[{"name":"DNA replication preinitiation complex formation","type":"exact"},{"name":"pre-IC complex assembly","type":"exact"}],"termid":"GO:0071163","terms_by_termid":{"GO:0140529":null,"GO:1902977":null}}


id: PBO:0034790
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SAGA complex subunit Hfi1/Ada1","termid":"PBO:0034790"}


id: PBO:0005701
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"beta-glucosidase Adg3 (predicted)","termid":"PBO:0005701"}


id: GO:0140850
data:
  {"annotated_genes":["SJAG_02319","SJAG_03006"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[112299,114927],"is_not":false,"summary":null,"term":"GO:0140850"}]},"cv_name":"molecular_function","definition":"Catalysis of the transfer of a ubiquitin molecule to a histone 2B at the conserved C-terminal lysine (K) residue. The last K residue is at position 119 in fission yeast, 123 in budding yeast, and 120 in mammals.","definition_xrefs":["PMID:28624371","PMID:17363370"],"direct_ancestors":[{"relation_name":"is_a","term_name":"histone H2B ubiquitin ligase activity","termid":"GO:0141054"}],"gene_count":2,"genes_by_uniquename":{"SJAG_02319":null,"SJAG_03006":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0140096"},{"rel_name":"is_a","termid":"GO:0004842"},{"rel_name":"is_a","termid":"GO:0019787"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016746"}],"interesting_parent_ids":["GO:0004842","GO:0016746","GO:0003824","GO:0016740","GO:0140096","GO:0003674","GO:0019787"],"is_obsolete":false,"name":"histone H2B C-terminal K residue ubiquitin ligase activity","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"histone H2B conserved C-terminal lysine ubiquitin ligase activity","type":"exact"},{"name":"histone H2B-K120 ubiquitin ligase activity","type":"exact"},{"name":"histone H2BK120 ubiquitin ligase activity","type":"exact"},{"name":"histone ubiquitin ligase activity (H2B-K120 specific)","type":"exact"}],"termid":"GO:0140850","terms_by_termid":{"GO:0140850":null}}


id: GO:2000885
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of a galactoglucomannan.","definition_xrefs":["GOC:mengo_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"polysaccharide catabolic process","termid":"GO:0000272"},{"relation_name":"is_a","term_name":"galactoglucomannan metabolic process","termid":"GO:0010392"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0005975"}],"interesting_parent_ids":["GO:0008150","GO:0005975"],"is_obsolete":false,"name":"galactoglucomannan catabolic process","synonyms":[{"name":"galactoglucomannan catabolism","type":"exact"}],"termid":"GO:2000885"}


id: PBO:0034517
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_number_of_unattached_kinetochores","termid":"PBO:0034517"}


id: GO:1905002
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of membrane repolarization during atrial cardiac muscle cell action potential.","definition_xrefs":["GOC:BHF_miRNA","GOC:mtg_cardiac_conduct_nov11","PMID:21098446","GO_REF:0000058","GOC:TermGenie","GOC:rph","GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of membrane repolarization during atrial cardiac muscle cell action potential","termid":"GO:1905000"},{"relation_name":"is_a","term_name":"positive regulation of membrane repolarization during cardiac muscle cell action potential","termid":"GO:1905033"},{"relation_name":"positively_regulates","term_name":"membrane repolarization during atrial cardiac muscle cell action potential","termid":"GO:0098914"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of membrane repolarization during atrial cardiac muscle cell action potential","synonyms":[{"name":"activation of atrial repolarization","type":"related"},{"name":"activation of electrocardiogram QRS complex","type":"related"},{"name":"activation of membrane repolarization during atrial cardiac muscle cell action potential","type":"narrow"},{"name":"positive regulation of atrial repolarization","type":"related"},{"name":"positive regulation of electrocardiogram QRS complex","type":"related"},{"name":"up regulation of atrial repolarization","type":"related"},{"name":"up regulation of electrocardiogram QRS complex","type":"related"},{"name":"up regulation of membrane repolarization during atrial cardiac muscle cell action potential","type":"exact"},{"name":"up-regulation of atrial repolarization","type":"related"},{"name":"up-regulation of electrocardiogram QRS complex","type":"related"},{"name":"up-regulation of membrane repolarization during atrial cardiac muscle cell action potential","type":"exact"},{"name":"upregulation of atrial repolarization","type":"related"},{"name":"upregulation of electrocardiogram QRS complex","type":"related"},{"name":"upregulation of membrane repolarization during atrial cardiac muscle cell action potential","type":"exact"}],"termid":"GO:1905002"}


id: PBO:0065847
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RAB11B, member RAS oncogene family","termid":"PBO:0065847"}


id: GO:0002746
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Antigen processing and presentation which is initiated by uptake of antigen via pinocytosis.","definition_xrefs":["ISBN:0781735149","GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"antigen processing and presentation","termid":"GO:0019882"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"antigen processing and presentation following pinocytosis","termid":"GO:0002746"}


id: GO:1903926
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a bisphenol A stimulus.","definition_xrefs":["GOC:TermGenie","PMID:22957036","GO_REF:0000071"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular response to organic cyclic compound","termid":"GO:0071407"},{"relation_name":"is_a","term_name":"cellular response to oxygen-containing compound","termid":"GO:1901701"},{"relation_name":"is_a","term_name":"response to bisphenol A","termid":"GO:1903925"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cellular response to bisphenol A","termid":"GO:1903926"}


id: GO:0021915
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of the neural tube over time, from its formation to the mature structure. The mature structure of the neural tube exists when the tube has been segmented into the forebrain, midbrain, hindbrain and spinal cord regions. In addition neural crest has budded away from the epithelium.","definition_xrefs":["GO_REF:0000021","GOC:jid","GOC:cls","GOC:dph","GOC:dgh"],"direct_ancestors":[{"relation_name":"is_a","term_name":"tube development","termid":"GO:0035295"},{"relation_name":"is_a","term_name":"epithelium development","termid":"GO:0060429"},{"relation_name":"part_of","term_name":"nervous system development","termid":"GO:0007399"},{"relation_name":"part_of","term_name":"chordate embryonic development","termid":"GO:0043009"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"neural tube development","termid":"GO:0021915"}


id: GO:0051551
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of aurones, a series of yellow plant pigments.","definition_xrefs":["PMID:20035037","GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"flavonoid biosynthetic process","termid":"GO:0009813"},{"relation_name":"is_a","term_name":"heterocycle biosynthetic process","termid":"GO:0018130"},{"relation_name":"is_a","term_name":"ketone biosynthetic process","termid":"GO:0042181"},{"relation_name":"is_a","term_name":"pigment biosynthetic process","termid":"GO:0046148"},{"relation_name":"is_a","term_name":"aurone metabolic process","termid":"GO:0051550"},{"relation_name":"is_a","term_name":"organic cyclic compound biosynthetic process","termid":"GO:1901362"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0044281","GO:0008150"],"is_obsolete":false,"name":"aurone biosynthetic process","synonyms":[{"name":"benzalcoumaran-3-one biosynthesis","type":"exact"},{"name":"benzalcoumaran-3-one biosynthetic process","type":"exact"}],"termid":"GO:0051551"}


id: GO:2000508
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of dendritic cell chemotaxis.","definition_xrefs":["GOC:obol"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of leukocyte chemotaxis","termid":"GO:0002688"},{"relation_name":"is_a","term_name":"regulation of mononuclear cell migration","termid":"GO:0071675"},{"relation_name":"regulates","term_name":"dendritic cell chemotaxis","termid":"GO:0002407"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of dendritic cell chemotaxis","termid":"GO:2000508"}


id: GO:0080036
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of cytokinin signaling.","definition_xrefs":["GOC:dhl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of signal transduction","termid":"GO:0009966"},{"relation_name":"regulates","term_name":"cytokinin-activated signaling pathway","termid":"GO:0009736"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"regulation of cytokinin-activated signaling pathway","synonyms":[{"name":"regulation of cytokinin mediated signaling pathway","type":"related"},{"name":"regulation of cytokinin mediated signalling","type":"exact"}],"termid":"GO:0080036"}


id: PBO:0077097
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"translocase of inner mitochondrial membrane 8A","termid":"PBO:0077097"}


id: PBO:0079283
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tubulin tyrosine ligase like 2","termid":"PBO:0079283"}


id: GO:0047626
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: S-adenosyl-L-methionine + H2O = S-methyl-5'-thioadenosine + L-homoserine + H+.","definition_xrefs":["GOC:curators"],"gene_count":0,"genotype_count":0,"name":"obsolete adenosylmethionine hydrolase activity (obsolete GO:0047626)","synonyms":[{"name":"adenosyl methionine hydrolase activity","type":"exact"}],"termid":"GO:0047626"}


id: PBO:0074493
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SNAI3 antisense RNA 1","termid":"PBO:0074493"}


id: PBO:0057412
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 548n","termid":"PBO:0057412"}


id: GO:0098046
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A complex of proteins that permits the translocation of proteins across the outer membrane via a transmembrane pore, formed by a beta-barrel, into the extracellular milieu or directly into host cells; the secreted proteins contain all the information required for translocation of an effector molecule through the cell envelope. The type V secretion systems includes the autotransporters (type Va), the two-partner secretion system (type Vb) and the Oca family (type Vc).","definition_xrefs":["PMID:15590781","GOC:bf","GOC:bhm","PMID:15119822"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein-containing complex","termid":"GO:0032991"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575","GO:0032991"],"is_obsolete":false,"name":"type V protein secretion system complex","synonyms":[{"name":"T5SS complex","type":"exact"},{"name":"autotransporter system complex","type":"narrow"}],"termid":"GO:0098046"}


id: PBO:0090743
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA-binding protein, Human BICC1 ortholog","termid":"PBO:0090743"}


id: GO:0000426
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Degradation of a peroxisome by microautophagy.","definition_xrefs":["GOC:autophagy","PMID:12914914","PMID:16973210","GOC:pad","PMID:15350980"],"direct_ancestors":[{"relation_name":"is_a","term_name":"microautophagy","termid":"GO:0016237"},{"relation_name":"is_a","term_name":"autophagy of peroxisome","termid":"GO:0030242"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006914"},{"rel_name":"is_a","termid":"GO:0044248"}],"interesting_parent_ids":["GO:0008150","GO:0006914","GO:0044248"],"is_obsolete":false,"name":"micropexophagy","termid":"GO:0000426"}


id: PBO:0070226
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U7 small nuclear 160 pseudogene","termid":"PBO:0070226"}


id: FYPO:0000374
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the occurrence of RNA modification is increased. All RNA modification may be increased, or one or more specific RNA modifications may be selectively affected.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal RNA modification","termid":"FYPO:0000370"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000294"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0000002","FYPO:0001985","FYPO:0000294","FYPO:0005447"],"is_obsolete":false,"name":"increased RNA modification","synonyms":[{"name":"RNA modification: increased","type":"related"},{"name":"increased RNA modification during mitotic cell cycle","type":"related"},{"name":"increased RNA modification during vegetative growth","type":"exact"}],"termid":"FYPO:0000374"}


id: PBO:0049936
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"HHIP like 2","termid":"PBO:0049936"}


id: GO:0050093
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: methanol + NAD+ = formaldehyde + H+ + NADH.","definition_xrefs":["EC:1.1.1.244","RHEA:19401"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor","termid":"GO:0016616"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003824","GO:0016491","GO:0003674"],"is_obsolete":false,"name":"methanol dehydrogenase activity","secondary_identifiers":["KEGG_REACTION:R00605","MetaCyc:METHANOL-DEHYDROGENASE-RXN"],"synonyms":[{"name":"methanol:NAD+ oxidoreductase activity","type":"related"}],"termid":"GO:0050093"}


id: PBO:0005581
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"short chain dehydrogenase pseudogene","termid":"PBO:0005581"}


id: PBO:0058266
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 4644","termid":"PBO:0058266"}


id: GO:0009516
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A colorless plastid involved in the synthesis of monoterpenes.","definition_xrefs":["ISBN:0943088399"],"direct_ancestors":[{"relation_name":"is_a","term_name":"plastid","termid":"GO:0009536"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005737","GO:0005575"],"is_obsolete":false,"name":"leucoplast","secondary_identifiers":["Wikipedia:Leucoplast"],"termid":"GO:0009516"}


id: GO:0015793
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The directed movement of glycerol across a membrane. Glycerol is 1,2,3-propanetriol, a sweet, hygroscopic, viscous liquid, widely distributed in nature as a constituent of many lipids.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"polyol transmembrane transport","termid":"GO:0015791"},{"relation_name":"is_a","term_name":"carbohydrate transmembrane transport","termid":"GO:0034219"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0055085"},{"rel_name":"is_a","termid":"GO:0051179"}],"interesting_parent_ids":["GO:0008150","GO:0055085","GO:0006810","GO:0051179"],"is_obsolete":false,"name":"glycerol transmembrane transport","synonyms":[{"name":"glycerol transport","type":"broad"}],"termid":"GO:0015793"}


id: GO:0030233
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalyzes transport of all four deoxy (d) NDPs, and, less efficiently, the corresponding dNTPs, in exchange for dNDPs, ADP, or ATP.","definition_xrefs":["PMID:11226231"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nucleotide transmembrane transporter activity","termid":"GO:0015215"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005215"}],"interesting_parent_ids":["GO:0005215","GO:0022857","GO:0003674"],"is_obsolete":false,"name":"deoxynucleotide transmembrane transporter activity","termid":"GO:0030233"}


id: GO:0001935
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The multiplication or reproduction of endothelial cells, resulting in the expansion of a cell population. Endothelial cells are thin flattened cells which line the inside surfaces of body cavities, blood vessels, and lymph vessels, making up the endothelium.","definition_xrefs":["GOC:add","ISBN:0781735149"],"direct_ancestors":[{"relation_name":"is_a","term_name":"epithelial cell proliferation","termid":"GO:0050673"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"endothelial cell proliferation","termid":"GO:0001935"}


id: SO:0001465
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A UST located in the 3'UTR of a protein-coding transcript.","definition_xrefs":["SO:nlw"],"direct_ancestors":[{"relation_name":"is_a","term_name":"UST","termid":"SO:0001464"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"three_prime_UST","synonyms":[{"name":"3' UST","type":"related"}],"termid":"SO:0001465"}


id: GO:0071367
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a brassinosteroid stimulus.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to brassinosteroid","termid":"GO:0009741"},{"relation_name":"is_a","term_name":"cellular response to hormone stimulus","termid":"GO:0032870"},{"relation_name":"is_a","term_name":"cellular response to lipid","termid":"GO:0071396"},{"relation_name":"is_a","term_name":"cellular response to organic cyclic compound","termid":"GO:0071407"},{"relation_name":"is_a","term_name":"cellular response to oxygen-containing compound","termid":"GO:1901701"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cellular response to brassinosteroid stimulus","termid":"GO:0071367"}


id: PBO:0057080
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 181a-2","termid":"PBO:0057080"}


id: PBO:0057177
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 329-1","termid":"PBO:0057177"}


id: FYPO:0005800
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the movement of one or more proteins within the plasma membrane is abnormal.","definition_xrefs":["PMID:25837586","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal cellular process during vegetative growth","termid":"FYPO:0001362"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0000002","FYPO:0001985","FYPO:0005447"],"is_obsolete":false,"name":"abnormal protein movement within plasma membrane during vegetative growth","synonyms":[{"name":"abnormal protein movement within plasma membrane during mitotic cell cycle","type":"related"}],"termid":"FYPO:0005800"}


id: PR:Q9Y811
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- pth3 gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q9Y811"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized peptide chain release factor-like protein C1105.18c, mitochondrial (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC1105.18c","synonyms":[{"name":"Spom972h-pth3","type":"exact"}],"termid":"PR:Q9Y811"}


id: GO:0062180
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: calcidiol + 2 H+ + O2 + 2 reduced [adrenodoxin] = (23S)-23,25-dihydroxycalciol + H2O + 2 oxidized [adrenodoxin].","definition_xrefs":["PMID:30205156","RHEA:46616","PMID:22100522"],"direct_ancestors":[{"relation_name":"is_a","term_name":"vitamin D 23-hydroxylase activity","termid":"GO:0062179"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016491","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"25-hydroxycholecalciferol-23-hydroxylase activity","termid":"GO:0062180"}


id: PBO:0069134
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 384, pseudogene","termid":"PBO:0069134"}


id: PBO:0042705
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CUGBP Elav-like family member 4","termid":"PBO:0042705"}


id: GO:2000258
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of protein activation cascade.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of protein maturation","termid":"GO:1903318"},{"relation_name":"is_a","term_name":"regulation of protein activation cascade","termid":"GO:2000257"},{"relation_name":"negatively_regulates","term_name":"protein activation cascade","termid":"GO:0072376"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"negatively_regulates","termid":"GO:0051604"},{"rel_name":"regulates","termid":"GO:0051604"},{"rel_name":"negatively_regulates","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0010467","GO:0051604","GO:0008150"],"is_obsolete":false,"name":"negative regulation of protein activation cascade","synonyms":[{"name":"negative regulation of protein activation pathway","type":"exact"},{"name":"negative regulation of protein activitory cascade","type":"exact"}],"termid":"GO:2000258"}


id: PBO:0109145
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PRUNE1 pseudogene 1","termid":"PBO:0109145"}


id: GO:0043374
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which a relatively unspecialized T cell acquires specialized features of a mature CD8-positive, alpha-beta T cell.","definition_xrefs":["ISBN:0781735149"],"direct_ancestors":[{"relation_name":"is_a","term_name":"CD8-positive, alpha-beta T cell activation","termid":"GO:0036037"},{"relation_name":"is_a","term_name":"alpha-beta T cell differentiation","termid":"GO:0046632"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"CD8-positive, alpha-beta T cell differentiation","synonyms":[{"name":"CD8-positive, alpha-beta T cell development","type":"related"},{"name":"CD8-positive, alpha-beta T lymphocyte differentiation","type":"exact"},{"name":"CD8-positive, alpha-beta T-cell differentiation","type":"exact"},{"name":"CD8-positive, alpha-beta T-lymphocyte differentiation","type":"exact"}],"termid":"GO:0043374"}


