# terms

id: GO:1900678
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of ferricrocin biosynthetic process.","definition_xrefs":["GOC:di","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of ferrichrome biosynthetic process","termid":"GO:1905568"},{"relation_name":"regulates","term_name":"ferricrocin biosynthetic process","termid":"GO:0031171"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0019748"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0019748","GO:0008150"],"is_obsolete":false,"name":"regulation of ferricrocin biosynthetic process","synonyms":[{"name":"regulation of ferricrocin anabolism","type":"exact"},{"name":"regulation of ferricrocin biosynthesis","type":"exact"},{"name":"regulation of ferricrocin biosynthetic process, peptide formation","type":"narrow"},{"name":"regulation of ferricrocin biosynthetic process, peptide modification","type":"narrow"},{"name":"regulation of ferricrocin formation","type":"exact"},{"name":"regulation of ferricrocin synthesis","type":"exact"}],"termid":"GO:1900678"}


id: GO:0052744
data:
  {"annotated_genes":["SJAG_00880","SJAG_03248","SJAG_02706"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[86974],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004438"},{"annotations":[92545,101790],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0043812"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: phosphatidyl-1D-myo-inositol monophosphate + H2O = phosphatidylinositol + phosphate.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phosphatidylinositol phosphate phosphatase activity","termid":"GO:0052866"}],"gene_count":3,"genes_by_uniquename":{"SJAG_00880":null,"SJAG_02706":null,"SJAG_03248":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0016788"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016787","GO:0016788"],"is_obsolete":false,"name":"phosphatidylinositol monophosphate phosphatase activity","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0052744","terms_by_termid":{"GO:0004438":null,"GO:0043812":null}}


id: FYPO:0004384
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which occurrence of single-stranded DNA binding by a gene product is normal (i.e. indistinguishable from wild type). The relevant gene product may be encoded by the mutated gene, or by a different gene.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal DNA binding","termid":"FYPO:0000655"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000653"},{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0000257"}],"interesting_parent_ids":["FYPO:0000653","FYPO:0000257","FYPO:0000652"],"is_obsolete":false,"name":"normal single-stranded DNA binding","synonyms":[{"name":"normal ssDNA binding","type":"exact"}],"termid":"FYPO:0004384"}


id: SO:0001637
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A gene that encodes for ribosomal RNA.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ncRNA_gene","termid":"SO:0001263"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"rRNA_gene","synonyms":[{"name":"rDNA","type":"exact"},{"name":"rRNA gene","type":"exact"}],"termid":"SO:0001637"}


id: PBO:0017989
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"spermidine synthase Srm1 (predicted)","termid":"PBO:0017989"}


id: GO:0050512
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: beta-D-galactosyl-(1,4)-D-glucosylceramide + UDP-galactose = alpha-D-galactosyl-(1,4)-beta-D-galactosyl-(1,4)-D-glucosylceramide + UDP.","definition_xrefs":["MetaCyc:2.4.1.228-RXN","EC:2.4.1.228"],"direct_ancestors":[{"relation_name":"is_a","term_name":"UDP-galactosyltransferase activity","termid":"GO:0035250"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016757"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016740"}],"interesting_parent_ids":["GO:0016740","GO:0003824","GO:0003674","GO:0016757"],"is_obsolete":false,"name":"lactosylceramide 4-alpha-galactosyltransferase activity","secondary_identifiers":["Reactome:R-HSA-9846477","RHEA:11924"],"synonyms":[{"name":"Gal-beta-(1,4)-Glc-beta-1-Cer alpha-(1,4)-galactosyltransferase activity","type":"related"},{"name":"Gal-beta-1,4-Glc-beta-1-Cer alpha-1,4-galactosyltransferase activity","type":"related"},{"name":"UDP-galactose:lactosylceramide 4II-alpha-D-galactosyltransferase activity","type":"related"},{"name":"globotriaosylceramide/CD77 synthase activity","type":"narrow"},{"name":"histo-blood group P(k) UDP-galactose activity","type":"narrow"},{"name":"histo-blood group Pk UDP-galactose","type":"related"},{"name":"lactosylceramide 4-a-galactosyltransferase activity","type":"exact"}],"termid":"GO:0050512"}


id: PBO:0088825
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Hrd1 ubiquitin ligase complex, CUE domain protein Cue1","termid":"PBO:0088825"}


id: GO:1903162
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Any serine transmembrane transporter activity that is involved in serine import into cell.","definition_xrefs":["GOC:TermGenie","ISBN:0-8249-3695-6","GO_REF:0000061"],"gene_count":0,"genotype_count":0,"name":"obsolete serine transmembrane transporter activity involved in serine import into cell (obsolete GO:1903162)","synonyms":[{"name":"serine transmembrane transporter activity involved in serine import into cell","type":"exact"}],"termid":"GO:1903162"}


id: PBO:0072778
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SAC1 like phosphatidylinositide phosphatase","termid":"PBO:0072778"}


id: FYPO:0005579
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which cohesion between sister chromatids is decreased in centromeric regions during meiosis.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased meiotic sister chromatid cohesion","termid":"FYPO:0002093"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"part_of","termid":"FYPO:0005447"},{"rel_name":"part_of","termid":"FYPO:0000631"},{"rel_name":"part_of","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000641"},{"rel_name":"is_a","termid":"FYPO:0000631"}],"interesting_parent_ids":["FYPO:0000631","FYPO:0005447","FYPO:0001985","FYPO:0000641","FYPO:0000002"],"is_obsolete":false,"name":"decreased meiotic sister chromatid cohesion at centromere","synonyms":[{"name":"decreased meiotic sister chromatid cohesion, centromeric","type":"exact"},{"name":"decreased sister chromatid cohesion at centromere during meiosis","type":"exact"},{"name":"reduced meiotic sister chromatid cohesion at centromere","type":"exact"}],"termid":"FYPO:0005579"}


id: GO:0000266
data:
  {"annotated_genes":["SJAG_02848","SJAG_04732","SJAG_02384","SJAG_05261","SJAG_01458","SJAG_01212","SJAG_03464","SJAG_01594","SJAG_04203"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[66588,90571,94944,95643],"is_not":false,"summary":null,"term":"GO:0000266"},{"annotations":[98500,90572,98231],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0090149"},{"annotations":[112305,99230],"is_not":false,"rel_names":["regulates","negatively_regulates"],"summary":null,"term":"GO:0090258"},{"annotations":[104729],"is_not":false,"rel_names":["positively_regulates","regulates"],"summary":null,"term":"GO:0090141"}]},"cv_name":"biological_process","definition":"The division of a mitochondrion within a cell to form two or more separate mitochondrial compartments.","definition_xrefs":["PMID:11038192"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mitochondrion organization","termid":"GO:0007005"},{"relation_name":"is_a","term_name":"organelle fission","termid":"GO:0048285"}],"gene_count":9,"genes_by_uniquename":{"SJAG_01212":null,"SJAG_01458":null,"SJAG_01594":null,"SJAG_02384":null,"SJAG_02848":null,"SJAG_03464":null,"SJAG_04203":null,"SJAG_04732":null,"SJAG_05261":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0007005"}],"interesting_parent_ids":["GO:0008150","GO:0007005"],"is_obsolete":false,"name":"mitochondrial fission","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000107":null},"synonyms":[{"name":"mitochondrial division","type":"exact"},{"name":"mitochondrial proliferation","type":"related"}],"termid":"GO:0000266","terms_by_termid":{"GO:0000266":null,"GO:0090141":null,"GO:0090149":null,"GO:0090258":null}}


id: GO:0002091
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of receptor internalization.","definition_xrefs":["GOC:hjd"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of receptor internalization","termid":"GO:0002090"},{"relation_name":"is_a","term_name":"negative regulation of receptor-mediated endocytosis","termid":"GO:0048261"},{"relation_name":"negatively_regulates","term_name":"receptor internalization","termid":"GO:0031623"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"negatively_regulates","termid":"GO:0006810"},{"rel_name":"negatively_regulates","termid":"GO:0016192"},{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"regulates","termid":"GO:0016192"}],"interesting_parent_ids":["GO:0008150","GO:0006810","GO:0016192"],"is_obsolete":false,"name":"negative regulation of receptor internalization","synonyms":[{"name":"down regulation of receptor internalization","type":"exact"},{"name":"down-regulation of receptor internalization","type":"exact"},{"name":"downregulation of receptor internalization","type":"exact"},{"name":"inhibition of receptor internalization","type":"narrow"}],"termid":"GO:0002091"}


id: PBO:0018230
data:
  {"annotation_feature_type":"gene","cv_name":"complementation","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"functionally complements S. cerevisiae BTS1","termid":"PBO:0018230"}


id: PBO:0089250
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CCAAT-binding factor, Noc1 related","termid":"PBO:0089250"}


id: PBO:0079326
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"testis-specific transcript, Y-linked 14","termid":"PBO:0079326"}


id: PBO:0076430
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TATA-box binding protein associated factor 11 like 6","termid":"PBO:0076430"}


id: PBO:0076641
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"T-box brain transcription factor 1","termid":"PBO:0076641"}


id: PBO:0057866
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 3177","termid":"PBO:0057866"}


id: GO:0071840
data:
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id: GO:0070656
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id: PBO:0062647
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id: PBO:0067063
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id: PBO:0031046
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id: PBO:0068322
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id: GO:0018304
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id: MOD:00599
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id: GO:0052437
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id: FYPO:0003616
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id: MOD:01573
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id: PBO:0042513
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id: GO:0006165
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id: GO:1901748
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id: PBO:0067685
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id: GO:0000028
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  {"annotated_genes":["SJAG_02477","SJAG_00523","SJAG_01548","SJAG_04998","SJAG_02340","SJAG_01296","SJAG_00572","SJAG_03617","SJAG_02749","SJAG_03798","SJAG_01169","SJAG_04256","SJAG_03424","SJAG_04524","SJAG_02479","SJAG_02870","SJAG_00513","SJAG_02184","SJAG_02335","SJAG_04746","SJAG_02803"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[73927,83096,83097,85344,90352,92206,93068,93069,96166,97453,97454,97455,99630,101469,101470,102619,102620,107297,107298,107505,107506,107507,107670,107979,110529,110530,112434,114604],"is_not":false,"summary":null,"term":"GO:0000028"},{"annotations":[109009,103452],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0034462"}]},"cv_name":"biological_process","definition":"The aggregation, arrangement and bonding together of constituent RNAs and proteins to form the small ribosomal subunit.","definition_xrefs":["GOC:jl","PMID:30467428"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein-RNA complex assembly","termid":"GO:0022618"},{"relation_name":"part_of","term_name":"ribosome assembly","termid":"GO:0042255"},{"relation_name":"part_of","term_name":"ribosomal small subunit biogenesis","termid":"GO:0042274"}],"gene_count":21,"genes_by_uniquename":{"SJAG_00513":null,"SJAG_00523":null,"SJAG_00572":null,"SJAG_01169":null,"SJAG_01296":null,"SJAG_01548":null,"SJAG_02184":null,"SJAG_02335":null,"SJAG_02340":null,"SJAG_02477":null,"SJAG_02479":null,"SJAG_02749":null,"SJAG_02803":null,"SJAG_02870":null,"SJAG_03424":null,"SJAG_03617":null,"SJAG_03798":null,"SJAG_04256":null,"SJAG_04524":null,"SJAG_04746":null,"SJAG_04998":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0042254"},{"rel_name":"is_a","termid":"GO:0065003"},{"rel_name":"part_of","termid":"GO:0044085"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0044085","GO:0008150","GO:0042254","GO:0065003"],"is_obsolete":false,"name":"ribosomal small subunit assembly","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"synonyms":[{"name":"30S ribosomal subunit assembly","type":"narrow"},{"name":"40S ribosomal subunit assembly","type":"narrow"}],"termid":"GO:0000028","terms_by_termid":{"GO:0000028":null,"GO:0034462":null}}


id: GO:0010928
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the rate, frequency or extent of auxin mediated signaling pathway. Auxin mediated signaling pathway is the series of molecular signals generated in response to detection of auxin.","definition_xrefs":["GOC:dph","GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of signal transduction","termid":"GO:0009966"},{"relation_name":"regulates","term_name":"auxin-activated signaling pathway","termid":"GO:0009734"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"regulation of auxin mediated signaling pathway","synonyms":[{"name":"regulation of auxin mediated signalling pathway","type":"exact"}],"termid":"GO:0010928"}


id: PBO:0075456
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"spermatogenesis associated 6 like","termid":"PBO:0075456"}


id: PBO:0052644
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"keratin 8 pseudogene 12","termid":"PBO:0052644"}


id: GO:1900757
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of D-amino-acid oxidase activity.","definition_xrefs":["GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of oxidoreductase activity","termid":"GO:0051341"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of D-amino-acid oxidase activity","synonyms":[{"name":"regulation of D-amino-acid:oxygen oxidoreductase (deaminating)","type":"exact"},{"name":"regulation of L-amino acid:O2 oxidoreductase activity","type":"exact"},{"name":"regulation of new yellow enzyme","type":"related"}],"termid":"GO:1900757"}


id: PR:O74860
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPCC18.10 gene.","definition_xrefs":["UniProtKB:O74860","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pyridoxal kinase C18.10 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC18.10","synonyms":[{"name":"Spom972h-SPCC18.10","type":"exact"}],"termid":"PR:O74860"}


id: PBO:0031247
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_regulation_of_pseudohyphal_growth","termid":"PBO:0031247"}


id: PBO:0089398
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DNAJ domain protein Caj1/Djp1-type","termid":"PBO:0089398"}


id: PBO:0069607
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 884, pseudogene","termid":"PBO:0069607"}


id: PBO:0081136
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ZFP30 zinc finger protein","termid":"PBO:0081136"}


id: GO:0031900
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The outer, i.e. cytoplasm-facing, lipid bilayer of the chromoplast envelope.","definition_xrefs":["GOC:pz"],"direct_ancestors":[{"relation_name":"is_a","term_name":"plastid outer membrane","termid":"GO:0009527"},{"relation_name":"is_a","term_name":"chromoplast membrane","termid":"GO:0046862"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005737"}],"interesting_parent_ids":["GO:0005575","GO:0005737"],"is_obsolete":false,"name":"chromoplast outer membrane","termid":"GO:0031900"}


id: GO:0060414
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which the structure of the smooth muscle tissue surrounding the aorta is generated and organized. An aorta is an artery that carries blood from the heart to other parts of the body.","definition_xrefs":["Wikipedia:Aorta","GOC:dph","GOC:bf","GOC:dgh"],"direct_ancestors":[{"relation_name":"is_a","term_name":"muscle tissue morphogenesis","termid":"GO:0060415"},{"relation_name":"part_of","term_name":"aorta morphogenesis","termid":"GO:0035909"},{"relation_name":"part_of","term_name":"smooth muscle tissue development","termid":"GO:0048745"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"aorta smooth muscle tissue morphogenesis","termid":"GO:0060414"}


id: GO:0052606
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: chlorophyllide a + NADPH + O2 + 2 H+ = 7-hydroxychlorophyllide a + NADP+ + H2O.","definition_xrefs":["EC:1.13.12.14","MetaCyc:RXN-7676"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of one atom of oxygen (internal monooxygenases or internal mixed function oxidases)","termid":"GO:0016703"},{"relation_name":"part_of","term_name":"chlorophyllide a oxygenase [overall] activity","termid":"GO:0010277"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"part_of","termid":"GO:0016491"},{"rel_name":"part_of","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0016491","GO:0003824"],"is_obsolete":false,"name":"chlorophyllide a oxygenase activity","secondary_identifiers":["KEGG_REACTION:R08203","RHEA:22676"],"synonyms":[{"name":"CAO activity","type":"broad"},{"name":"chlorophyll a oxygenase activity","type":"exact"},{"name":"chlorophyllide a:oxygen 7-oxidoreductase activity","type":"related"},{"name":"chlorophyllide-a oxygenase activity","type":"related"}],"termid":"GO:0052606"}


id: SO:1000055
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"The DNA mutation changes, usually destroys, the first coding triplet of a gene. Usually prevents translation although another initiator codon may be used.","definition_xrefs":["EBI:www.ebi.ac.uk/mutations/recommendations/mutevent.html"],"gene_count":0,"genotype_count":0,"name":"OBSOLETE SO:1000055 sequence_variant_causing_initiator_codon_change_in_transcript (obsolete SO:1000055)","synonyms":[{"name":"mutation causing initiator codon change in transcript","type":"related"},{"name":"sequence variant causing initiator codon change in transcript","type":"exact"}],"termid":"SO:1000055"}


id: PBO:0027625
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_cell_cycle_arrest_in_mitotic_G1_phase_in_response_to_nitrogen_starvation","termid":"PBO:0027625"}


id: PBO:0083193
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Dubious open reading frame; unlikely to encode a functional protein, based on available experimental and comparative sequence data; completely overlaps the verified gene BUD5/YCR038C; identified by homology with hemiascomycetous yeast species","termid":"PBO:0083193"}


id: GO:0019413
data:
  {"annotated_genes":["SJAG_03786"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[96578],"is_not":false,"summary":null,"term":"GO:0019413"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of acetate, the anion of acetic acid.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"acetate metabolic process","termid":"GO:0006083"},{"relation_name":"is_a","term_name":"monocarboxylic acid biosynthetic process","termid":"GO:0072330"}],"gene_count":1,"genes_by_uniquename":{"SJAG_03786":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0044281","GO:0008150"],"is_obsolete":false,"name":"acetate biosynthetic process","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"acetate anabolism","type":"exact"},{"name":"acetate biosynthesis","type":"exact"},{"name":"acetate formation","type":"exact"},{"name":"acetate synthesis","type":"exact"}],"termid":"GO:0019413","terms_by_termid":{"GO:0019413":null}}


id: PR:Q09782
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A GPI ethanolamine phosphate transferase 2 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx","PANTHER:PTHR23072:SF0"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"GPI ethanolamine phosphate transferase 2 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC13G6.03","secondary_identifiers":["UniProtKB:Q09782"],"synonyms":[{"name":"SPAC13G6.03","type":"related"},{"name":"Spom972h-PIGG","type":"exact"},{"name":"glycosylphosphatidylinositol-anchor biosynthesis protein 7 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"gpi7","type":"related"}],"termid":"PR:Q09782"}


id: PBO:0016947
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Schizosaccharomyces specific protein Mde1","termid":"PBO:0016947"}


id: PATO:0002425
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"Open to view or not covered by another entity.","definition_xrefs":["PATOC:WD"],"direct_ancestors":[{"relation_name":"is_a","term_name":"position","termid":"PATO:0000140"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"exposed","termid":"PATO:0002425"}


id: PBO:0028416
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abolished_meiosis_II","termid":"PBO:0028416"}


id: GO:0016717
data:
  {"annotated_genes":["SJAG_03249","SJAG_05311","SJAG_03018","SJAG_03943","SJAG_03509","SJAG_00717","SJAG_01057"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[86977],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0000249"},{"annotations":[108455,103358,85122,94532],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0000248"},{"annotations":[85123,103359],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0050046"},{"annotations":[94534,103361,105582,108457],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0042284"},{"annotations":[110378],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004768"}]},"cv_name":"molecular_function","definition":"Catalysis of an oxidation-reduction (redox) reaction in which hydrogen or electrons are transferred from each of two donors, and molecular oxygen is reduced to two molecules of water.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen","termid":"GO:0016705"}],"gene_count":7,"genes_by_uniquename":{"SJAG_00717":null,"SJAG_01057":null,"SJAG_03018":null,"SJAG_03249":null,"SJAG_03509":null,"SJAG_03943":null,"SJAG_05311":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003824","GO:0016491","GO:0003674"],"is_obsolete":false,"name":"oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["EC:1.14.19.-"],"termid":"GO:0016717","terms_by_termid":{"GO:0000248":null,"GO:0000249":null,"GO:0004768":null,"GO:0042284":null,"GO:0050046":null}}


id: PBO:0089852
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CIA machinery protein Mms19","termid":"PBO:0089852"}


id: GO:0106357
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: NAD+ + sn-glycerol 1-phosphate = dihydroxyacetone phosphate + H+ + NADH.","definition_xrefs":["RHEA:21412"],"direct_ancestors":[{"relation_name":"is_a","term_name":"glycerol-1-phosphate dehydrogenase [NAD(P)+] activity","termid":"GO:0050492"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0003674","GO:0016491","GO:0003824"],"is_obsolete":false,"name":"glycerol-1-phosphate dehydrogenase [NAD+] activity","termid":"GO:0106357"}


id: PBO:0073217
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"semaphorin 5B","termid":"PBO:0073217"}


id: GO:0062198
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"OBSOLETE. A region of heterochromatin associated with sites in rDNA repeats where replication forks pause.","definition_xrefs":["PMID:25417108"],"gene_count":0,"genotype_count":0,"name":"obsolete rDNA replication pause site heterochromatin (obsolete GO:0062198)","termid":"GO:0062198"}


id: GO:1990703
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"OBSOLETE. The component of the Golgi medial membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.","definition_xrefs":["GOC:bhm","PMID:24119662","PMID:16038056"],"gene_count":0,"genotype_count":0,"name":"obsolete integral component of Golgi medial cisterna membrane (obsolete GO:1990703)","synonyms":[{"name":"integral component of medial-Golgi cisterna membrane","type":"exact"}],"termid":"GO:1990703"}


id: GO:0006888
data:
  {"annotated_genes":["SJAG_04391","SJAG_04070","SJAG_04615","SJAG_00092","SJAG_02120","SJAG_05345","SJAG_01279","SJAG_02525","SJAG_02012","SJAG_04513","SJAG_00858","SJAG_01166","SJAG_04419","SJAG_04021","SJAG_00767","SJAG_05344","SJAG_01899","SJAG_01025","SJAG_01991","SJAG_02103","SJAG_04002","SJAG_03467","SJAG_00484","SJAG_03153","SJAG_01570","SJAG_03810","SJAG_03558","SJAG_00284","SJAG_02839","SJAG_05326","SJAG_00899","SJAG_01508","SJAG_02234","SJAG_02539","SJAG_02655","SJAG_02824","SJAG_04739","SJAG_04196","SJAG_03499","SJAG_02349","SJAG_04909","SJAG_03552","SJAG_02640","SJAG_00578","SJAG_00357","SJAG_04592","SJAG_03907","SJAG_04434","SJAG_04402","SJAG_01642","SJAG_00785","SJAG_04569","SJAG_04837","SJAG_00192","SJAG_04598","SJAG_00557","SJAG_04618","SJAG_01409","SJAG_02160","SJAG_01600","SJAG_00906","SJAG_02418","SJAG_00072","SJAG_01633","SJAG_01003","SJAG_04740","SJAG_03670","SJAG_02264","SJAG_04112","SJAG_05013","SJAG_03933","SJAG_03244","SJAG_04528","SJAG_00330","SJAG_02482","SJAG_04938","SJAG_03270","SJAG_01415"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[83674,84116,84812,84986,85750,86648,87012,87609,88705,88789,89477,89846,89976,90638,91177,91239,91683,91722,92961,93421,93569,93762,94133,94227,94733,94793,95983,96031,96452,96538,96799,97910,98256,98880,99019,99891,100049,100376,100665,102219,102641,102941,103126,103868,104269,104580,105359,105689,105986,106622,106714,107340,108341,108599,108635,109588,109717,110302,110929,110975,111592,112341,112377,112520,112977,113620,114198,114795,114927],"is_not":false,"summary":null,"term":"GO:0006888"},{"annotations":[91140],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0048208"},{"annotations":[102381],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0090114"},{"annotations":[71020,74166,107877,108633,106077,112599,88931],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0090110"},{"annotations":[107539],"is_not":false,"rel_names":["regulates"],"summary":null,"term":"GO:0060628"}]},"cv_name":"biological_process","definition":"The directed movement of substances from the endoplasmic reticulum (ER) to the Golgi, mediated by COP II vesicles. Small COP II coated vesicles form from the ER and then fuse directly with the cis-Golgi. Larger structures are transported along microtubules to the cis-Golgi.","definition_xrefs":["GOC:dph","GOC:jp","GOC:tb","GOC:ascb_2009","ISBN:0716731363"],"direct_ancestors":[{"relation_name":"is_a","term_name":"intracellular transport","termid":"GO:0046907"},{"relation_name":"is_a","term_name":"Golgi vesicle transport","termid":"GO:0048193"}],"gene_count":78,"genes_by_uniquename":{"SJAG_00072":null,"SJAG_00092":null,"SJAG_00192":null,"SJAG_00284":null,"SJAG_00330":null,"SJAG_00357":null,"SJAG_00484":null,"SJAG_00557":null,"SJAG_00578":null,"SJAG_00767":null,"SJAG_00785":null,"SJAG_00858":null,"SJAG_00899":null,"SJAG_00906":null,"SJAG_01003":null,"SJAG_01025":null,"SJAG_01166":null,"SJAG_01279":null,"SJAG_01409":null,"SJAG_01415":null,"SJAG_01508":null,"SJAG_01570":null,"SJAG_01600":null,"SJAG_01633":null,"SJAG_01642":null,"SJAG_01899":null,"SJAG_01991":null,"SJAG_02012":null,"SJAG_02103":null,"SJAG_02120":null,"SJAG_02160":null,"SJAG_02234":null,"SJAG_02264":null,"SJAG_02349":null,"SJAG_02418":null,"SJAG_02482":null,"SJAG_02525":null,"SJAG_02539":null,"SJAG_02640":null,"SJAG_02655":null,"SJAG_02824":null,"SJAG_02839":null,"SJAG_03153":null,"SJAG_03244":null,"SJAG_03270":null,"SJAG_03467":null,"SJAG_03499":null,"SJAG_03552":null,"SJAG_03558":null,"SJAG_03670":null,"SJAG_03810":null,"SJAG_03907":null,"SJAG_03933":null,"SJAG_04002":null,"SJAG_04021":null,"SJAG_04070":null,"SJAG_04112":null,"SJAG_04196":null,"SJAG_04391":null,"SJAG_04402":null,"SJAG_04419":null,"SJAG_04434":null,"SJAG_04513":null,"SJAG_04528":null,"SJAG_04569":null,"SJAG_04592":null,"SJAG_04598":null,"SJAG_04615":null,"SJAG_04618":null,"SJAG_04739":null,"SJAG_04740":null,"SJAG_04837":null,"SJAG_04909":null,"SJAG_04938":null,"SJAG_05013":null,"SJAG_05326":null,"SJAG_05344":null,"SJAG_05345":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0016192"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0051179"}],"interesting_parent_ids":["GO:0016192","GO:0051179","GO:0008150","GO:0006810"],"is_obsolete":false,"name":"endoplasmic reticulum to Golgi vesicle-mediated transport","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"secondary_identifiers":["GO:0048221"],"synonyms":[{"name":"ER to Golgi transport","type":"exact"},{"name":"ER to Golgi vesicle-mediated transport","type":"exact"},{"name":"anterograde (ER to Golgi) transport","type":"exact"},{"name":"anterograde transport, ER to Golgi","type":"exact"},{"name":"anterograde transport, endoplasmic reticulum to Golgi","type":"exact"},{"name":"anterograde vesicle-mediated transport, ER to Golgi","type":"exact"},{"name":"anterograde vesicle-mediated transport, endoplasmic reticulum to Golgi","type":"exact"},{"name":"endoplasmic reticulum to Golgi transport","type":"exact"},{"name":"rough ER to cis-Golgi transport","type":"exact"},{"name":"rough ER to cis-Golgi vesicle-mediated transport","type":"exact"},{"name":"rough endoplasmic reticulum to cis-Golgi transport","type":"exact"},{"name":"rough endoplasmic reticulum to cis-Golgi vesicle-mediated transport","type":"exact"}],"termid":"GO:0006888","terms_by_termid":{"GO:0006888":null,"GO:0048208":null,"GO:0060628":null,"GO:0090110":null,"GO:0090114":null}}


id: PBO:0046789
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"EZH inhibitory protein","termid":"PBO:0046789"}


id: GO:0015472
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Assists in the correct assembly of fimbria, extracellular organelles that are used to attach a bacterial cell to a surface, but is not a component of the fimbrium when performing its normal biological function.","definition_xrefs":["GOC:jl","PMID:7906046","GOC:rb"],"gene_count":0,"genotype_count":0,"name":"obsolete fimbrium-specific chaperone activity (obsolete GO:0015472)","synonyms":[{"name":"fimbrium-specific chaperone activity","type":"exact"}],"termid":"GO:0015472"}


id: GO:0038066
data:
  {"annotated_genes":["SJAG_01587","SJAG_04825","SJAG_02592","SJAG_03828","SJAG_00318","SJAG_00117","SJAG_04777","SJAG_03185","SJAG_06622","SJAG_00027","SJAG_02183","SJAG_01199","SJAG_02945","SJAG_02135","SJAG_05000","SJAG_02000","SJAG_02013","SJAG_03903","SJAG_06592","SJAG_02342","SJAG_06621","SJAG_03893","SJAG_03384"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[82966,89956,96615,97479,106210],"is_not":false,"summary":null,"term":"GO:0038066"},{"annotations":[114307,95126,90645,113083,87146,91601],"is_not":false,"rel_names":["negatively_regulates","regulates"],"summary":null,"term":"GO:1903753"},{"annotations":[107722,90874,104792,104791,104789,104794,104793,104790,104795,114267,108396,113367],"is_not":false,"rel_names":["regulates","positively_regulates"],"summary":null,"term":"GO:1900745"},{"annotations":[90646],"is_not":false,"rel_names":["regulates"],"summary":null,"term":"GO:1900744"}]},"cv_name":"biological_process","definition":"A MAPK cascade containing at least the p38MAPK (MAPK14) MAP kinase, or Hog1 in yeast. It starts with the activation of a MAP3K, and the consecutive activation of a MPK2K and of p38MAPK. The cascade can also contain an additional tier: the upstream MAP4K. The kinases in each tier phosphorylate and activate the kinases in the downstream tier. The p38MAPK cascade is activated by stress signals, including hyperosmolarity, as well as by G protein-coupled receptors, growth factors, and cytokines, and results in cellular responses such as cell proliferation, cell differentiation, apoptosis and inflammation.","definition_xrefs":["PMID:23125017","PMID:20811974","PMID:32794416"],"direct_ancestors":[{"relation_name":"is_a","term_name":"MAPK cascade","termid":"GO:0000165"}],"gene_count":23,"genes_by_uniquename":{"SJAG_00027":null,"SJAG_00117":null,"SJAG_00318":null,"SJAG_01199":null,"SJAG_01587":null,"SJAG_02000":null,"SJAG_02013":null,"SJAG_02135":null,"SJAG_02183":null,"SJAG_02342":null,"SJAG_02592":null,"SJAG_02945":null,"SJAG_03185":null,"SJAG_03384":null,"SJAG_03828":null,"SJAG_03893":null,"SJAG_03903":null,"SJAG_04777":null,"SJAG_04825":null,"SJAG_05000":null,"SJAG_06592":null,"SJAG_06621":null,"SJAG_06622":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"p38MAPK cascade","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"MAPK14 cascade","type":"related"},{"name":"osmosensory signaling MAPK cascade","type":"narrow"},{"name":"p38 MAPK cascade","type":"exact"},{"name":"p38 cascade","type":"exact"}],"termid":"GO:0038066","terms_by_termid":{"GO:0038066":null,"GO:1900744":null,"GO:1900745":null,"GO:1903753":null}}


id: RO:0002457
data:
  {"annotation_feature_type":"gene","cv_name":"relationship","direct_ancestors":[{"relation_name":"is_a","term_name":"trophically_interacts_with","termid":"RO:0002438"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"acquires_nutrients_from","termid":"RO:0002457"}


id: GO:0102006
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: 4-methyl-2-oxopentanoate + coenzyme A(4-) + NAD(1-) = isovaleryl-CoA(4-) + carbon dioxide + NADH(2-).","definition_xrefs":["EC:1.2.1.-"],"gene_count":0,"genotype_count":0,"name":"obsolete 4-methyl-2-oxopentanoate dehydrogenase activity (obsolete GO:0102006)","termid":"GO:0102006"}


id: PBO:0062886
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ovochymase 2","termid":"PBO:0062886"}


id: GO:2001128
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of a methane from a methylamine.","definition_xrefs":["GOC:mengo_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"methanogenesis","termid":"GO:0015948"},{"relation_name":"is_a","term_name":"methylamine metabolic process","termid":"GO:0030416"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006091"}],"interesting_parent_ids":["GO:0008150","GO:0006091"],"is_obsolete":false,"name":"methane biosynthetic process from methylamine","termid":"GO:2001128"}


id: PBO:0047307
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Fas cell surface death receptor","termid":"PBO:0047307"}


id: PBO:0088759
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"choline-phosphate cytidylyltransferase Pcy1","termid":"PBO:0088759"}


id: PBO:0070370
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNY5 pseudogene 8","termid":"PBO:0070370"}


id: PBO:0083615
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Dynein intermediate chain, microtubule motor protein; required for intracellular transport and cell division; acts in cytoplasmic dynein pathway; forms complex with dynein light chain Dyn2p that promotes Dyn1p homodimerization and potentiates motor processivity; Dyn2p-Pac11p complex is also important for interaction of dynein motor complex with dynactin complex; forms cortical cytoplasmic microtubule capture site with Num1p; essential in the absence of CIN8","termid":"PBO:0083615"}


id: PBO:0049036
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"G protein-coupled receptor 25","termid":"PBO:0049036"}


id: PBO:0068554
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U2 small nuclear 5, pseudogene","termid":"PBO:0068554"}


id: GO:0042023
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Regulated re-replication of DNA within a single cell cycle, resulting in an increased cell ploidy. An example of this process occurs in the synthesis of Drosophila salivary gland cell polytene chromosomes.","definition_xrefs":["GOC:jl","GOC:vw"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell cycle DNA replication","termid":"GO:0044786"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006259"},{"rel_name":"part_of","termid":"GO:0007049"},{"rel_name":"is_a","termid":"GO:0006260"}],"interesting_parent_ids":["GO:0008150","GO:0006260","GO:0006259","GO:0007049"],"is_obsolete":false,"name":"DNA endoreduplication","synonyms":[{"name":"DNA endoreplication","type":"exact"},{"name":"DNA re-duplication","type":"exact"}],"termid":"GO:0042023"}


id: MOD:02073
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that contains an L-selenocysteine residue coordinated to one or more metal atoms or metal clusters.","definition_xrefs":["PubMed:18688235"],"direct_ancestors":[{"relation_name":"is_a","term_name":"modified L-selenocysteine residue","termid":"MOD:01158"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"metal or metal cluster coordinated L-selenocysteine residue","termid":"MOD:02073"}


id: PBO:0043908
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cytokine receptor like factor 1","termid":"PBO:0043908"}


id: PBO:0090536
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"plasma membrane ammonium transmembrane transporter Amt1","termid":"PBO:0090536"}


id: GO:0046207
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of trypanothione (N1,N6,-bis(glutathionyl)spermidine), an essential redox intermediate in intracellular thiol redox regulation which also plays a role in protecting against oxidative stress.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"trypanothione metabolic process","termid":"GO:0046206"},{"relation_name":"is_a","term_name":"glutathione derivative catabolic process","termid":"GO:1901686"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006790"},{"rel_name":"is_a","termid":"GO:0044248"}],"interesting_parent_ids":["GO:0008150","GO:0006790","GO:0044248"],"is_obsolete":false,"name":"trypanothione catabolic process","synonyms":[{"name":"trypanothione breakdown","type":"exact"},{"name":"trypanothione catabolism","type":"exact"},{"name":"trypanothione degradation","type":"exact"}],"termid":"GO:0046207"}


id: GO:1904870
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of protein localization to Cajal body.","definition_xrefs":["GOC:BHF_telomere","GOC:nc","GOC:TermGenie","PMID:25467444","GO_REF:0000058","GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of protein localization to nucleus","termid":"GO:1900181"},{"relation_name":"is_a","term_name":"regulation of protein localization to Cajal body","termid":"GO:1904869"},{"relation_name":"negatively_regulates","term_name":"protein localization to Cajal body","termid":"GO:1904867"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of protein localization to Cajal body","synonyms":[{"name":"down regulation of protein localisation in Cajal body","type":"exact"},{"name":"down regulation of protein localisation to Cajal body","type":"exact"},{"name":"down regulation of protein localization in Cajal body","type":"exact"},{"name":"down regulation of protein localization to Cajal body","type":"exact"},{"name":"down-regulation of protein localisation in Cajal body","type":"exact"},{"name":"down-regulation of protein localisation to Cajal body","type":"exact"},{"name":"down-regulation of protein localization in Cajal body","type":"exact"},{"name":"down-regulation of protein localization to Cajal body","type":"exact"},{"name":"downregulation of protein localisation in Cajal body","type":"exact"},{"name":"downregulation of protein localisation to Cajal body","type":"exact"},{"name":"downregulation of protein localization in Cajal body","type":"exact"},{"name":"downregulation of protein localization to Cajal body","type":"exact"},{"name":"inhibition of protein localisation in Cajal body","type":"narrow"},{"name":"inhibition of protein localisation to Cajal body","type":"narrow"},{"name":"inhibition of protein localization in Cajal body","type":"narrow"},{"name":"inhibition of protein localization to Cajal body","type":"narrow"},{"name":"negative regulation of protein localisation in Cajal body","type":"exact"},{"name":"negative regulation of protein localisation to Cajal body","type":"exact"},{"name":"negative regulation of protein localization in Cajal body","type":"exact"}],"termid":"GO:1904870"}


id: FYPO:0003188
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A transport phenotype observed in the vegetative growth phase of the life cycle in which the import of protein into the nucleus is abnormal. Import of all proteins or a specific protein may be affected.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal intracellular protein transport during vegetative growth","termid":"FYPO:0000215"},{"relation_name":"is_a","term_name":"abnormal nuclear export","termid":"FYPO:0000506"},{"relation_name":"is_a","term_name":"abnormal protein localization to nucleus during vegetative growth","termid":"FYPO:0001129"},{"relation_name":"is_a","term_name":"abnormal nuclear import","termid":"FYPO:0001217"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000138"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0001985","FYPO:0000138","FYPO:0000002","FYPO:0005447"],"is_obsolete":false,"name":"abnormal protein import into nucleus during vegetative growth","synonyms":[{"name":"abnormal protein import into nucleus during mitotic cell cycle","type":"related"}],"termid":"FYPO:0003188"}


id: GO:0038085
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a vascular endothelial growth factor.","definition_xrefs":["PMID:17470632"],"direct_ancestors":[{"relation_name":"is_a","term_name":"growth factor binding","termid":"GO:0019838"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005515"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005488"}],"interesting_parent_ids":["GO:0003674","GO:0005488","GO:0005515"],"is_obsolete":false,"name":"vascular endothelial growth factor binding","synonyms":[{"name":"VEGF binding","type":"exact"}],"termid":"GO:0038085"}


id: PBO:0060429
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nucleic acid binding protein 2","termid":"PBO:0060429"}


id: PBO:0090010
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial ribosomal protein subunit L22","termid":"PBO:0090010"}


id: PBO:0080042
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ubiquitin specific peptidase 17 like family member 28","termid":"PBO:0080042"}


id: PBO:0083364
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Dubious open reading frame; unlikely to encode a functional protein, based on available experimental and comparative sequence data; overlaps the verified gene SNT2/YGL131C","termid":"PBO:0083364"}


id: FYPO:0002320
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of squalene measured in a cell is lower than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased level of substance in cell during vegetative growth","termid":"FYPO:0001329"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0001320","FYPO:0000002"],"is_obsolete":false,"name":"decreased cellular squalene level","synonyms":[{"name":"decreased cellular squalene level during mitotic cell cycle","type":"related"},{"name":"decreased cellular squalene level during vegetative growth","type":"exact"},{"name":"decreased squalene accumulation","type":"related"},{"name":"reduced cellular squalene level","type":"exact"}],"termid":"FYPO:0002320"}


id: PBO:0070410
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"replication protein A3","termid":"PBO:0070410"}


id: PBO:0058840
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 8070","termid":"PBO:0058840"}


id: PBO:0065976
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RAD54L2 pseudogene 1","termid":"PBO:0065976"}


id: PBO:0050754
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"heat shock protein family E (Hsp10) member 1 pseudogene 16","termid":"PBO:0050754"}


id: PBO:0040804
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"basic helix-loop-helix family member e41","termid":"PBO:0040804"}


id: PR:Q9UTI1
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- fub1 gene.","definition_xrefs":["UniProtKB:Q9UTI1","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"silencing boundary-establishment protein FUB1-like protein (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC15E1.10","synonyms":[{"name":"Spom972h-fub1","type":"exact"},{"name":"proteasome inhibitor PI31-like protein SPAC15E1.10 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:Q9UTI1"}


id: PBO:0064942
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protease associated domain containing 1","termid":"PBO:0064942"}


id: PBO:0073448
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"secreted frizzled related protein 2","termid":"PBO:0073448"}


id: PBO:0083838
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Evolutionarily-conserved 5'-3' exonuclease; component of cytoplasmic processing (P) bodies involved in mRNA decay; enters the nucleus and positively regulates transcription initiation and elongation; involved in microtubule-mediated processes, filamentous growth, ribosomal RNA maturation, telomere maintenance, and turnover of tRNA introns; negative regulator of autophagy; activated by the scavenger decapping enzyme Dcs1p; expression regulated by Ash1p in rich conditions","termid":"PBO:0083838"}


id: FYPO:0007220
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which acetylation of lysine at position 9 of histone H3 in regions containing protein-coding genes is normal (i.e. indistinguishable from wild type).","definition_xrefs":["PomBase:mah","PMID:31260531"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal histone H3-K9 acetylation during vegetative growth","termid":"FYPO:0003223"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001312"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0000257","FYPO:0001312","FYPO:0001320","FYPO:0000002"],"is_obsolete":false,"name":"normal histone H3-K9 acetylation at protein coding gene during vegetative growth","synonyms":[{"name":"normal histone H3-K9 acetylation at protein coding gene during mitotic cell cycle","type":"related"},{"name":"normal histone H3-K9 acetylation at protein-coding gene during vegetative growth","type":"exact"},{"name":"normal histone H3K9 acetylation at protein coding gene during vegetative growth","type":"exact"}],"termid":"FYPO:0007220"}


id: GO:0047502
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: (+)-cis-sabinol + NAD+ = (1S,5S)-sabinone + H+ + NADH.","definition_xrefs":["RHEA:18329","EC:1.1.1.228"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor","termid":"GO:0016616"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016491"],"is_obsolete":false,"name":"(+)-sabinol dehydrogenase activity","secondary_identifiers":["KEGG_REACTION:R03745","MetaCyc:+-SABINOL-DEHYDROGENASE-RXN"],"synonyms":[{"name":"(+)-cis-sabinol dehydrogenase activity","type":"related"},{"name":"(+)-cis-sabinol:NAD+ oxidoreductase activity","type":"related"}],"termid":"GO:0047502"}


id: PBO:0068396
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ring finger protein 215","termid":"PBO:0068396"}


id: PBO:0072969
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"secretoglobin family 1C member 1","termid":"PBO:0072969"}


id: PBO:0038640
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"acyl-CoA thioesterase 7","termid":"PBO:0038640"}


id: GO:0006245
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of TDP, ribosylthymine diphosphate.","definition_xrefs":["ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pyrimidine ribonucleoside diphosphate catabolic process","termid":"GO:0009195"},{"relation_name":"is_a","term_name":"pyrimidine ribonucleotide catabolic process","termid":"GO:0009222"},{"relation_name":"is_a","term_name":"TDP metabolic process","termid":"GO:0046043"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0055086"},{"rel_name":"is_a","termid":"GO:0044248"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0044281","GO:0008150","GO:0044248","GO:0055086"],"is_obsolete":false,"name":"TDP catabolic process","synonyms":[{"name":"TDP breakdown","type":"exact"},{"name":"TDP catabolism","type":"exact"},{"name":"TDP degradation","type":"exact"}],"termid":"GO:0006245"}


id: PBO:0046746
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"exocyst complex component 3 like 1","termid":"PBO:0046746"}


id: FYPO:0000302
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A conjugation phenotype in which a cell's response to mating pheromone is abnormal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular response phenotype","termid":"FYPO:0000298"},{"relation_name":"is_a","term_name":"abnormal cellular process","termid":"FYPO:0000628"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000298"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0000298","FYPO:0005447","FYPO:0001985","FYPO:0000002"],"is_obsolete":false,"name":"abnormal response to pheromone","synonyms":[{"name":"abnormal response to pheromone involved in conjugation with cellular fusion","type":"exact"},{"name":"defective response to pheromone","type":"exact"}],"termid":"FYPO:0000302"}


id: PBO:0055658
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 3098","termid":"PBO:0055658"}


id: FYPO:0002939
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which an RNA catabolic process that degrades mRNA encoded in the nucleus is normal (i.e. indistinguishable from wild type).","definition_xrefs":["PomBase:mah","GO:0000956"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal metabolic process during vegetative growth","termid":"FYPO:0000859"},{"relation_name":"is_a","term_name":"normal RNA metabolic process","termid":"FYPO:0004850"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001312"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0000257","FYPO:0001320","FYPO:0001312"],"is_obsolete":false,"name":"normal nuclear mRNA catabolic process","synonyms":[{"name":"normal nuclear mRNA breakdown","type":"exact"},{"name":"normal nuclear mRNA catabolic process during mitotic cell cycle","type":"related"},{"name":"normal nuclear mRNA catabolic process during vegetative growth","type":"exact"},{"name":"normal nuclear mRNA catabolism","type":"exact"},{"name":"normal nuclear mRNA degradation","type":"exact"},{"name":"normal nuclear-transcribed mRNA catabolic process","type":"exact"}],"termid":"FYPO:0002939"}


id: PBO:0043410
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CKLF like MARVEL transmembrane domain containing 7","termid":"PBO:0043410"}


id: PBO:0075829
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"signal sequence receptor subunit 4","termid":"PBO:0075829"}


id: PATO:0001935
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A shape quality inhering in a bearer by virtue of the bearer's being roundish, a little inclining to be oblong.","definition_xrefs":["ISBN:0881923214"],"direct_ancestors":[{"relation_name":"is_a","term_name":"circular","termid":"PATO:0000411"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"obtuse","synonyms":[{"name":"roundish","type":"exact"}],"termid":"PATO:0001935"}


id: PBO:0089622
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"U5 snRNP-associated protein Prp18","termid":"PBO:0089622"}


id: SO:0002027
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A short open reading frame that is found in the 5' untranslated region of an mRNA and plays a role in translational regulation.","definition_xrefs":["PMID:12890013","POMBASE:mah","PMID:16153175"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ORF","termid":"SO:0000236"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uORF","secondary_identifiers":["PMID:26684391"],"synonyms":[{"name":"regulatory uORF","type":"exact"},{"name":"upstream ORF","type":"exact"}],"termid":"SO:0002027"}


id: PBO:0013091
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"splicing factor Syf2","termid":"PBO:0013091"}


id: GO:0006859
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The directed extracellular movement of carbohydrates.","definition_xrefs":["GOC:ai"],"gene_count":0,"genotype_count":0,"name":"obsolete extracellular carbohydrate transport (obsolete GO:0006859)","termid":"GO:0006859"}


id: PBO:0055111
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2530","termid":"PBO:0055111"}


id: PBO:0080943
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zygote arrest 1 like","termid":"PBO:0080943"}


id: PBO:0079757
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"urocortin 3","termid":"PBO:0079757"}


id: GO:0010884
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that increases the rate, frequency or extent of lipid storage. Lipid storage is the accumulation and maintenance in cells or tissues of lipids, compounds soluble in organic solvents but insoluble or sparingly soluble in aqueous solvents. Lipid reserves can be accumulated during early developmental stages for mobilization and utilization at later stages of development.","definition_xrefs":["GOC:tb","GOC:dph","GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of lipid storage","termid":"GO:0010883"},{"relation_name":"is_a","term_name":"positive regulation of lipid localization","termid":"GO:1905954"},{"relation_name":"positively_regulates","term_name":"lipid storage","termid":"GO:0019915"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of lipid storage","synonyms":[{"name":"positive regulation of lipid sequestration","type":"narrow"}],"termid":"GO:0010884"}


id: PBO:0056283
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mannosidase beta like","termid":"PBO:0056283"}


id: GO:0060498
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The series of molecular signals generated as a consequence of a retinoic acid receptor binding to one of its physiological ligands contributing to the formation of the primary lung bud.","definition_xrefs":["GOC:mtg_lung","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"retinoic acid receptor signaling pathway","termid":"GO:0048384"},{"relation_name":"part_of","term_name":"primary lung bud formation","termid":"GO:0060431"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"retinoic acid receptor signaling pathway involved in lung bud formation","synonyms":[{"name":"retinoic acid receptor signalling pathway involved in lung bud formation","type":"exact"}],"termid":"GO:0060498"}


id: PBO:0058010
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MIR3936 host gene","termid":"PBO:0058010"}


id: GO:2001204
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of osteoclast development.","definition_xrefs":["GOC:obol"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of hemopoiesis","termid":"GO:1903706"},{"relation_name":"regulates","term_name":"osteoclast development","termid":"GO:0036035"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of osteoclast development","synonyms":[{"name":"regulation of osteoclast cell development","type":"exact"}],"termid":"GO:2001204"}


id: PBO:0059334
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial ribosomal protein S6 pseudogene 4","termid":"PBO:0059334"}


id: PBO:0003849
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pseudouridine synthase (predicted)","termid":"PBO:0003849"}


id: PBO:0080529
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"WASH complex subunit 2A","termid":"PBO:0080529"}


id: GO:0014054
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of the regulated release of gamma-aminobutyric acid.","definition_xrefs":["GOC:ef"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of gamma-aminobutyric acid secretion","termid":"GO:0014052"},{"relation_name":"is_a","term_name":"positive regulation of organic acid transport","termid":"GO:0032892"},{"relation_name":"is_a","term_name":"positive regulation of secretion","termid":"GO:0051047"},{"relation_name":"is_a","term_name":"positive regulation of amino acid transport","termid":"GO:0051957"},{"relation_name":"positively_regulates","term_name":"gamma-aminobutyric acid secretion","termid":"GO:0014051"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"positively_regulates","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0006810","GO:0008150"],"is_obsolete":false,"name":"positive regulation of gamma-aminobutyric acid secretion","synonyms":[{"name":"activation of gamma-aminobutyric acid secretion","type":"narrow"},{"name":"positive regulation of GABA secretion","type":"exact"},{"name":"stimulation of gamma-aminobutyric acid secretion","type":"narrow"},{"name":"up regulation of gamma-aminobutyric acid secretion","type":"exact"},{"name":"up-regulation of gamma-aminobutyric acid secretion","type":"exact"},{"name":"upregulation of gamma-aminobutyric acid secretion","type":"exact"}],"termid":"GO:0014054"}


id: PBO:0000877
data:
  {"annotation_feature_type":"gene","cv_name":"misc","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"target of TIM23 translocase","termid":"PBO:0000877"}


id: PR:P78860
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A ribosomal RNA methyltransferase 2 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO03720","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"rRNA methyltransferase 2, mitochondrial (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC2G2.15c","secondary_identifiers":["UniProtKB:P78860"],"synonyms":[{"name":"21S rRNA (uridine-2'-O)-methyltransferase (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-FTSJ2","type":"exact"}],"termid":"PR:P78860"}


id: PATO:0001276
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A color consisting of magenta color and low saturation.","definition_xrefs":["PATOC:GVG"],"direct_ancestors":[{"relation_name":"is_a","term_name":"magenta","termid":"PATO:0000321"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"desaturated magenta","synonyms":[{"name":"pale magenta","type":"exact"}],"termid":"PATO:0001276"}


id: PBO:0038402
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-enables_subfunction","termid":"PBO:0038402"}


id: SO:0000307
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"Regions of a few hundred to a few thousand bases in vertebrate genomes that are relatively GC and CpG rich; they are typically unmethylated and often found near the 5' ends of genes.","definition_xrefs":["SO:rd"],"direct_ancestors":[{"relation_name":"is_a","term_name":"biological_region","termid":"SO:0001411"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CpG_island","secondary_identifiers":["http://en.wikipedia.org/wiki/CpG_island"],"synonyms":[{"name":"CG island","type":"exact"},{"name":"CpG island","type":"exact"}],"termid":"SO:0000307"}


id: GO:0098883
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A cellular process that results in the controlled breakdown of synapse. After it starts the process is continuous until the synapse has disappeared.","definition_xrefs":["PMID:12062020","PMID:18083105","PMID:22632716","PMID:29844190","GOC:dos"],"direct_ancestors":[{"relation_name":"is_a","term_name":"synapse organization","termid":"GO:0050808"},{"relation_name":"is_a","term_name":"cell junction disassembly","termid":"GO:0150146"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"synapse pruning","synonyms":[{"name":"synapse clearance","type":"exact"},{"name":"synapse disassembly","type":"exact"},{"name":"synapse elimination","type":"exact"},{"name":"synapse removal","type":"exact"}],"termid":"GO:0098883"}


id: GO:1903370
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of foraging behavior.","definition_xrefs":["GOC:TermGenie","PMID:8677262","GO_REF:0000058","GOC:mr"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of behavior","termid":"GO:0048520"},{"relation_name":"is_a","term_name":"regulation of foraging behavior","termid":"GO:1903368"},{"relation_name":"positively_regulates","term_name":"foraging behavior","termid":"GO:0060756"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of foraging behavior","synonyms":[{"name":"activation of foraging behavior","type":"narrow"},{"name":"up regulation of foraging behavior","type":"exact"},{"name":"up-regulation of foraging behavior","type":"exact"},{"name":"upregulation of foraging behavior","type":"exact"}],"termid":"GO:1903370"}


id: PR:Q9HGM3
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"An AFG3-like protein 2 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO04081","PRO:DNx","PANTHER:PTHR23076:SF11"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial respiratory chain complexes assembly protein rca1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC543.09","secondary_identifiers":["UniProtKB:Q9HGM3"],"synonyms":[{"name":"Spom972h-AFG3L2","type":"exact"}],"termid":"PR:Q9HGM3"}


id: GO:0005797
data:
  {"annotated_genes":["SJAG_03634","SJAG_00567","SJAG_03278","SJAG_04739"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[85804,93759,96874,109001],"is_not":false,"summary":null,"term":"GO:0005797"}]},"cv_name":"cellular_component","definition":"The middle Golgi cisterna (or cisternae).","definition_xrefs":["ISBN:0815316194"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Golgi cisterna","termid":"GO:0031985"}],"gene_count":4,"genes_by_uniquename":{"SJAG_00567":null,"SJAG_03278":null,"SJAG_03634":null,"SJAG_04739":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005794"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005737"}],"interesting_parent_ids":["GO:0005575","GO:0005794","GO:0005737"],"is_obsolete":false,"name":"Golgi medial cisterna","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"Golgi apparatus medial cisterna","type":"exact"}],"termid":"GO:0005797","terms_by_termid":{"GO:0005797":null}}


id: PBO:0013039
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA processing protein (predicted)","termid":"PBO:0013039"}


id: GO:0030426
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The migrating motile tip of a growing neuron projection, where actin accumulates, and the actin cytoskeleton is the most dynamic.","definition_xrefs":["GOC:aruk","PMID:10082468","GOC:bc","ISBN:0815316194"],"direct_ancestors":[{"relation_name":"is_a","term_name":"site of polarized growth","termid":"GO:0030427"},{"relation_name":"part_of","term_name":"distal axon","termid":"GO:0150034"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"growth cone","secondary_identifiers":["Wikipedia:Growth_cone"],"termid":"GO:0030426"}


id: GO:0010246
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of rhamnogalacturonan I component of pectin, a rhamnose-rich pectic polysaccharide.","definition_xrefs":["GOC:pz"],"direct_ancestors":[{"relation_name":"is_a","term_name":"rhamnogalacturonan I metabolic process","termid":"GO:0010395"},{"relation_name":"is_a","term_name":"cell wall polysaccharide biosynthetic process","termid":"GO:0070592"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005975"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0071554"}],"interesting_parent_ids":["GO:0071554","GO:0008150","GO:0005975"],"is_obsolete":false,"name":"rhamnogalacturonan I biosynthetic process","synonyms":[{"name":"rhamnogalacturonan I anabolism","type":"exact"},{"name":"rhamnogalacturonan I biosynthesis","type":"exact"},{"name":"rhamnogalacturonan I formation","type":"exact"},{"name":"rhamnogalacturonan I synthesis","type":"exact"}],"termid":"GO:0010246"}


id: PBO:0110308
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mRNA cleavage and polyadenylation specificity factor complex associated protein (PNUTS)","termid":"PBO:0110308"}


id: GO:0051700
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: fructosyl-amino acid + O2 = corresponding amino acid + glucosone + H2O2.","definition_xrefs":["PMID:16233628"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the CH-NH group of donors, oxygen as acceptor","termid":"GO:0016647"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016491"],"is_obsolete":false,"name":"fructosyl-amino acid oxidase activity","synonyms":[{"name":"FAOD activity","type":"exact"}],"termid":"GO:0051700"}


id: PBO:0034463
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abolished_protein_phosphorylation_during_cellular_response_to_bleomycin","termid":"PBO:0034463"}


id: PBO:0063692
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protein-glucosylgalactosylhydroxylysine glucosidase","termid":"PBO:0063692"}


id: PR:O60176
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- cxr1 gene.","definition_xrefs":["PRO:DNx","UniProtKB:O60176"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized RNA-binding protein C23E6.01c (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC23E6.01c","synonyms":[{"name":"Spom972h-cxr1","type":"exact"}],"termid":"PR:O60176"}


id: MOD:00416
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A change resulting in an alteration of the measured molecular mass of a peptide or protein hydroxyl amino acid phosphorylated promptly followed by secondary loss of a neutral trihydrogen phosphate molecular fragment.","definition_xrefs":["Unimod:23"],"direct_ancestors":[{"relation_name":"is_a","term_name":"modified residue with neutral loss of phosphate","termid":"MOD:00432"},{"relation_name":"is_a","term_name":"dehydrated residue","termid":"MOD:00704"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"phosphorylation of an hydroxyl amino acid with prompt loss of phosphate","synonyms":[{"name":"Dehydrated","type":"related"},{"name":"Dehydration","type":"related"}],"termid":"MOD:00416"}


id: FYPO:0006114
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of protein measured in a cell during S phase of the mitotic cell cycle is higher than normal. Total protein or a specific protein may be affected.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased protein level during vegetative growth","termid":"FYPO:0001327"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"output_of","termid":"FYPO:0006551"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0006551","FYPO:0000002","FYPO:0001985","FYPO:0005447"],"is_obsolete":false,"name":"increased protein level during mitotic S phase","synonyms":[{"name":"increased protein accumulation during mitotic S phase","type":"related"},{"name":"increased protein level during S phase of mitotic cell cycle","type":"related"},{"name":"increased protein level during mitotic S phase during vegetative growth","type":"exact"}],"termid":"FYPO:0006114"}


id: PBO:0088551
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"vacuolar polyphosphatase","termid":"PBO:0088551"}


id: PBO:0029061
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-vacuoles_present_in_increased_numbers","termid":"PBO:0029061"}


id: PBO:0061794
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"odontogenic, ameloblast associated","termid":"PBO:0061794"}


id: PBO:0084913
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Mitotic exit network regulator; forms GTPase-activating Bfa1p-Bub2p complex that binds Tem1p and spindle pole bodies, blocks cell cycle progression before anaphase in response to spindle and kinetochore damage","termid":"PBO:0084913"}


id: PBO:0086991
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Required for 25S rRNA maturation and 60S ribosomal subunit assembly; localizes to the nucleolus and in foci along nuclear periphery; constituent of 66S pre-ribosomal particles; cooperates with Rrs1p and Mps3p to mediate telomere clustering by binding Sir4p, but is not involved in telomere tethering","termid":"PBO:0086991"}


id: PBO:0027142
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_histone_methyltransferase_activity","termid":"PBO:0027142"}


id: PBO:0071925
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein S4X pseudogene 2","termid":"PBO:0071925"}


id: GO:1900984
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The chemical reactions and pathways resulting in the breakdown of vindoline.","definition_xrefs":["GOC:yaf","MetaCyc:PWY-5292","GOC:TermGenie"],"gene_count":0,"genotype_count":0,"name":"obsolete vindoline catabolic process (obsolete GO:1900984)","synonyms":[{"name":"vindoline breakdown","type":"exact"},{"name":"vindoline catabolism","type":"exact"},{"name":"vindoline degradation","type":"exact"}],"termid":"GO:1900984"}


id: FYPO:0005251
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A phenotype observed in the vegetative growth phase of the life cycle in which cells show increased sensitivity to tellurite (TeO3(2-)) ions. Cells stop growing (and may die) at a concentration of tellurite ions that allows wild type cells to grow.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased sensitivity to chemical during vegetative growth","termid":"FYPO:0000127"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000003"},{"rel_name":"is_a","termid":"FYPO:0000139"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0002683"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0000139","FYPO:0001985","FYPO:0002683","FYPO:0000003"],"is_obsolete":false,"name":"sensitive to tellurite","synonyms":[{"name":"hypersensitive to tellurite","type":"exact"},{"name":"sensitive to tellurite during mitotic cell cycle","type":"related"},{"name":"sensitive to tellurite during vegetative growth","type":"exact"},{"name":"sensitive to tellurite ions","type":"exact"}],"termid":"FYPO:0005251"}


id: GO:0015658
data:
  {"annotated_genes":["SJAG_04725","SJAG_02029"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[98541,105896],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0015188"}]},"cv_name":"molecular_function","definition":"Enables the transfer of branched-chain amino acids from one side of a membrane to the other. Branched-chain amino acids are amino acids with a branched carbon skeleton without rings.","definition_xrefs":["ISBN:0815340729","GOC:ai","GOC:mtg_transport","GOC:bf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"carboxylic acid transmembrane transporter activity","termid":"GO:0046943"}],"gene_count":2,"genes_by_uniquename":{"SJAG_02029":null,"SJAG_04725":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0005215"}],"interesting_parent_ids":["GO:0003674","GO:0005215","GO:0022857"],"is_obsolete":false,"name":"branched-chain amino acid transmembrane transporter activity","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["GO:1901240","Reactome:R-HSA-9672770"],"synonyms":[{"name":"branched-chain aliphatic amino acid transmembrane transporter activity","type":"exact"},{"name":"branched-chain aliphatic amino acid transporter activity","type":"exact"},{"name":"leucine/valine/isoleucine permease activity","type":"related"},{"name":"valine/tyrosine/tryptophan permease activity","type":"related"}],"termid":"GO:0015658","terms_by_termid":{"GO:0015188":null}}


id: MOD:00683
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively removes neutral hydrogen atoms (proton and electron) from a residue.","definition_xrefs":["PubMed:18688235"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidized residue","termid":"MOD:00675"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dehydrogenated residue","synonyms":[{"name":"dHRes","type":"exact"}],"termid":"MOD:00683"}


id: PBO:0068510
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U1 small nuclear 100, pseudogene","termid":"PBO:0068510"}


id: PBO:0056224
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MAGE family member D4B","termid":"PBO:0056224"}


id: GO:0008554
data:
  {"annotated_genes":["SJAG_04167"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[108257],"is_not":false,"summary":null,"term":"GO:0008554"}]},"cv_name":"molecular_function","definition":"Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + Na+(in) = ADP + phosphate + Na+(out); by a phosphorylative mechanism.","definition_xrefs":["PMID:9224683"],"direct_ancestors":[{"relation_name":"is_a","term_name":"sodium ion transmembrane transporter activity","termid":"GO:0015081"},{"relation_name":"is_a","term_name":"P-type ion transporter activity","termid":"GO:0015662"},{"relation_name":"is_a","term_name":"ATPase-coupled monoatomic cation transmembrane transporter activity","termid":"GO:0019829"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04167":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0005215"}],"interesting_parent_ids":["GO:0005215","GO:0022857","GO:0003674"],"is_obsolete":false,"name":"P-type sodium transporter activity","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["RHEA:14633","EC:7.2.2.3","MetaCyc:RXN-17739"],"synonyms":[{"name":"Na(+)-exporting ATPase activity","type":"broad"},{"name":"Na(+)-transporting ATPase activity","type":"broad"},{"name":"Na+-exporting ATPase activity","type":"broad"},{"name":"Na+-transporting ATPase activity","type":"broad"},{"name":"sodium exporting ATPase activity, phosphorylative mechanism","type":"exact"},{"name":"sodium transmembrane transporter activity, phosphorylative mechanism","type":"exact"},{"name":"sodium transport ATPase activity","type":"broad"},{"name":"sodium-exporting ATPase activity","type":"broad"},{"name":"sodium-exporting ATPase activity, phosphorylative mechanism","type":"exact"},{"name":"sodium-translocating P-type ATPase activity","type":"exact"}],"termid":"GO:0008554","terms_by_termid":{"GO:0008554":null}}


id: GO:0008297
data:
  {"annotated_genes":["SJAG_02908","SJAG_05373","SJAG_05280","SJAG_01648"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[84001,103178],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0008310"},{"annotations":[92774,107477],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0045145"}]},"cv_name":"molecular_function","definition":"Catalysis of the sequential cleavage of mononucleotides from a free 5' or 3' terminus of a single-stranded DNA molecule.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"DNA exonuclease activity, producing 5'-phosphomonoesters","termid":"GO:0016895"}],"gene_count":4,"genes_by_uniquename":{"SJAG_01648":null,"SJAG_02908":null,"SJAG_05280":null,"SJAG_05373":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0016788"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0004527"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0140097"}],"interesting_parent_ids":["GO:0004527","GO:0140097","GO:0016787","GO:0003674","GO:0003824","GO:0016788"],"is_obsolete":false,"name":"single-stranded DNA exodeoxyribonuclease activity","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"single-stranded DNA specific exodeoxyribonuclease activity","type":"related"},{"name":"ssDNA-specific exodeoxyribonuclease activity","type":"related"}],"termid":"GO:0008297","terms_by_termid":{"GO:0008310":null,"GO:0045145":null}}


id: PBO:0070839
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L13a pseudogene 18","termid":"PBO:0070839"}


id: GO:0007353
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. (Was not defined before being made obsolete).","definition_xrefs":["GOC:ai"],"gene_count":0,"genotype_count":0,"name":"obsolete ventral/lateral system (obsolete GO:0007353)","synonyms":[{"name":"ventral/lateral system","type":"exact"}],"termid":"GO:0007353"}


id: GO:1904203
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of iodide transport.","definition_xrefs":["PMID:20392814","GO_REF:0000058","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of monoatomic anion transport","termid":"GO:1903793"},{"relation_name":"is_a","term_name":"regulation of iodide transport","termid":"GO:1904201"},{"relation_name":"positively_regulates","term_name":"iodide transport","termid":"GO:0015705"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"positively_regulates","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0008150","GO:0006810"],"is_obsolete":false,"name":"positive regulation of iodide transport","synonyms":[{"name":"activation of iodide transport","type":"narrow"},{"name":"up regulation of iodide transport","type":"exact"},{"name":"up-regulation of iodide transport","type":"exact"},{"name":"upregulation of iodide transport","type":"exact"}],"termid":"GO:1904203"}


id: FYPO:0003752
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the total amount of polyadenylated messenger RNA (mRNA) measured in the nucleus is higher than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased nuclear polyadenylated mRNA level during vegetative growth","termid":"FYPO:0003119"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0006551"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0002403"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0001320","FYPO:0001985","FYPO:0000002","FYPO:0002403","FYPO:0006551"],"is_obsolete":false,"name":"increased total nuclear polyadenylated mRNA level during vegetative growth","synonyms":[{"name":"increased level of bulk nuclear polyadenylated mRNA during vegetative growth","type":"exact"},{"name":"increased level of total nuclear polyadenylated mRNA during vegetative growth","type":"exact"},{"name":"increased nuclear bulk poly(A)+ mRNA level during vegetative growth","type":"exact"},{"name":"increased total nuclear polyadenylated mRNA accumulation during vegetative growth","type":"related"},{"name":"increased total nuclear polyadenylated mRNA level during mitotic cell cycle","type":"related"},{"name":"increased total nuclear polyadenylated mRNA transcript level during vegetative growth","type":"exact"},{"name":"increased total nuclear polyadenylated messenger RNA level during vegetative growth","type":"exact"},{"name":"total nuclear poly(A)+ mRNA accumulation","type":"related"},{"name":"total nuclear poly-A mRNA accumulation","type":"related"}],"termid":"FYPO:0003752"}


id: PBO:0085039
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Nonessential component of the TIM23 complex; interacts with the Translocase of the Outer Mitochondrial membrane (TOM complex) and with respiratory enzymes; may regulate the Translocase of the Inner Mitochondrial membrane (TIM23 complex) activity","termid":"PBO:0085039"}


id: PBO:0026889
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-translation_regulation_phenotype_during_vegetative_growth","termid":"PBO:0026889"}


id: PBO:0043445
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"calponin 2 pseudogene 6","termid":"PBO:0043445"}


id: PBO:0053983
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1299","termid":"PBO:0053983"}


id: PBO:0079077
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-iMet (anticodon CAT) 1-5","termid":"PBO:0079077"}


id: GO:0030564
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Specifies the site of 2'-O-ribose methylation in a tRNA molecule by base pairing with a short sequence around the target residue.","definition_xrefs":["GOC:mah","PMID:12457565"],"direct_ancestors":[{"relation_name":"is_a","term_name":"tRNA modification guide activity","termid":"GO:0030557"},{"relation_name":"is_a","term_name":"RNA 2'-O-ribose methylation guide activity","termid":"GO:0030561"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003723"},{"rel_name":"is_a","termid":"GO:0005488"}],"interesting_parent_ids":["GO:0003674","GO:0003723","GO:0005488"],"is_obsolete":false,"name":"tRNA 2'-O-ribose methylation guide activity","termid":"GO:0030564"}


id: MOD:01919
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-aspartic acid residue to (2S,3S)-3-hydroxyaspartic acid.","definition_xrefs":["RESID:AA0579","ChEBI:10696","PubMed:21177872","ChEBI:138111"],"direct_ancestors":[{"relation_name":"is_a","term_name":"3-hydroxy-L-aspartic acid","termid":"MOD:01926"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"(2S,3S)-3-hydroxyaspartic acid","synonyms":[{"name":"(2S,3S)-2-amino-3-hydroxybutanedioic acid","type":"exact"},{"name":"(2S,3S)-3-hydroxyaspartic acid","type":"exact"},{"name":"(3S)-3-hydroxy-L-aspartic acid","type":"exact"},{"name":"2-amino-3-hydroxysuccinic acid","type":"exact"},{"name":"2-azanyl-3-hydroxybutanedioic acid","type":"exact"},{"name":"3-hydroxyaspartic acid","type":"exact"},{"name":"L-threo-3-hydroxyaspartic acid","type":"exact"},{"name":"L-threo-beta-hydroxyaspartic acid","type":"exact"},{"name":"MOD_RES (3S)-3-hydroxyaspartate","type":"exact"}],"termid":"MOD:01919"}


id: PBO:0091113
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Rheb GAP, tuberin Tsc2","termid":"PBO:0091113"}


id: PBO:0084236
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Imidazoleglycerol-phosphate dehydratase; catalyzes the sixth step in histidine biosynthesis; mutations cause histidine auxotrophy and sensitivity to Cu, Co, and Ni salts; transcription is regulated by general amino acid control via Gcn4p","termid":"PBO:0084236"}


id: PBO:0028791
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_histone_H3-K9_methylation_at_centromere_outer_repeat","termid":"PBO:0028791"}


id: GO:0038080
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the concomitant phosphorylation of threonine (T) and tyrosine (Y) residues in a Thr-Glu-Tyr (TEY) thiolester sequence in a MAP kinase (MAPK) substrate, as part of a MAPK signaling cascade that passes on a signal within an osmosensory signaling pathway.","definition_xrefs":["GOC:signaling"],"gene_count":0,"genotype_count":0,"name":"obsolete MAP kinase kinase activity involved in osmosensory signaling pathway (obsolete GO:0038080)","synonyms":[{"name":"MAP kinase kinase activity involved in osmosensory signalling pathway","type":"exact"},{"name":"MAP2K activity involved in osmosensory signaling pathway","type":"exact"},{"name":"MAPKK activity involved in osmosensory signaling pathway","type":"exact"}],"termid":"GO:0038080"}


id: PBO:0044701
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DEAD-box helicase 3 X-linked","termid":"PBO:0044701"}


id: PBO:0048427
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glutamine amidotransferase class 1 domain containing 3","termid":"PBO:0048427"}


id: PBO:0054101
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1460","termid":"PBO:0054101"}


id: PBO:0074534
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small NF90 (ILF3) associated RNA G2","termid":"PBO:0074534"}


id: PBO:0056228
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MAGE family member H1","termid":"PBO:0056228"}


id: GO:0046526
data:
  {"annotated_genes":["SJAG_00237"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[100817],"is_not":false,"summary":null,"term":"GO:0046526"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: NAD+ + xylitol = D-xylulose + H+ + NADH.","definition_xrefs":["RHEA:20433","EC:1.1.1.9"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor","termid":"GO:0016616"},{"relation_name":"is_a","term_name":"hexitol dehydrogenase activity","termid":"GO:0031320"}],"gene_count":1,"genes_by_uniquename":{"SJAG_00237":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0003674","GO:0016491","GO:0003824"],"is_obsolete":false,"name":"D-xylulose reductase activity","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["MetaCyc:D-XYLULOSE-REDUCTASE-RXN","Reactome:R-HSA-5662471","KEGG_REACTION:R01896"],"synonyms":[{"name":"xylitol dehydrogenase activity","type":"exact"}],"termid":"GO:0046526","terms_by_termid":{"GO:0046526":null}}


id: PBO:0024866
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Smc5-6 complex SMC P-loop ATPase subunit Smc6","termid":"PBO:0024866"}


id: GO:0072759
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a topoisomerase inhibitor stimulus.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular response to chemical stimulus","termid":"GO:0070887"},{"relation_name":"is_a","term_name":"response to topoisomerase inhibitor","termid":"GO:0072758"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cellular response to topoisomerase inhibitor","termid":"GO:0072759"}


id: PBO:0062787
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ORC1 pseudogene 1","termid":"PBO:0062787"}


id: GO:0008663
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: nucleoside 2',3'-cyclic phosphate + H2O = nucleoside 3'-phosphate.","definition_xrefs":["EC:3.1.4.16"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cyclic-nucleotide phosphodiesterase activity","termid":"GO:0004112"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0016788"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016788","GO:0016787"],"is_obsolete":false,"name":"2',3'-cyclic-nucleotide 2'-phosphodiesterase activity","secondary_identifiers":["RHEA:19621","MetaCyc:CYCPHOSDIESTER-RXN"],"synonyms":[{"name":"2',3 '-cyclic AMP phosphodiesterase activity","type":"related"},{"name":"2',3'-cyclic AMP 2'-phosphohydrolase activity","type":"related"},{"name":"2',3'-cyclic nucleoside monophosphate phosphodiesterase","type":"broad"},{"name":"2',3'-cyclic nucleotidase activity","type":"related"},{"name":"2',3'-cyclic nucleotide phosphohydrolase","type":"broad"},{"name":"2':3'-cyclic nucleotide phosphodiesterase:3'-nucleotidase activity","type":"related"},{"name":"2':3'-cyclic phosphodiesterase activity","type":"related"},{"name":"cyclic 2',3'-nucleotide 2'-phosphodiesterase activity","type":"related"},{"name":"cyclic 2',3'-nucleotide phosphodiesterase","type":"broad"},{"name":"cyclic phosphodiesterase:3'-nucleotidase activity","type":"related"},{"name":"nucleoside-2',3'-cyclic-phosphate 3'-nucleotidohydrolase activity","type":"related"},{"name":"ribonucleoside 2',3'-cyclic phosphate diesterase activity","type":"related"}],"termid":"GO:0008663"}


id: PBO:0012060
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"galactose-specific flocculin Gsf2","termid":"PBO:0012060"}


id: PBO:0071463
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L32 pseudogene 4","termid":"PBO:0071463"}


id: PR:000050543
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A GTP-binding protein gtr1 (Schizosaccharomyces pombe) that is non-covalently bound to GTP.","definition_xrefs":["PPRO:DAN","PomBase:VW","PMID:33534698","PMID:27227887"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"},{"relation_name":"is_a","term_name":"GTP-binding protein gtr1 (Schizosaccharomyces pombe)","termid":"PR:000050541"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"gtr1/GTP+","pombase_gene_id":"SPBC337.13c","synonyms":[{"name":"Spom-gtr1/GTP+","type":"exact"},{"name":"gtr1/GTP+","type":"exact"},{"name":"Gtr1/GTP+","type":"exact"}],"termid":"PR:000050543"}


id: SO:0001736
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A kind of histone modification site, whereby the 9th residue (a lysine), from the start of the H3 histone protein is methylated.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"histone_methylation_site","termid":"SO:0001701"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"SO:0000839"}],"interesting_parent_ids":["SO:0000839"],"is_obsolete":false,"name":"H3K9_methylation_site","synonyms":[{"name":"H3K9 methylation site","type":"exact"}],"termid":"SO:0001736"}


id: GO:0018584
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 2,4,5-trichlorophenoxyacetic acid + 1/2 O2 = glyoxylate + 2,4,5-trichlorophenol.","definition_xrefs":["UM-BBD_reactionID:r0359"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on single donors with incorporation of molecular oxygen","termid":"GO:0016701"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003824","GO:0016491","GO:0003674"],"is_obsolete":false,"name":"2,4,5-trichlorophenoxyacetic acid oxygenase activity","secondary_identifiers":["EC:1.13.99.-"],"termid":"GO:0018584"}


id: GO:0052700
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of ergothioneine, a naturally occurring metabolite of histidine with antioxidant properties.","definition_xrefs":["Wikipedia:Ergothioneine"],"direct_ancestors":[{"relation_name":"is_a","term_name":"sulfur amino acid catabolic process","termid":"GO:0000098"},{"relation_name":"is_a","term_name":"amino-acid betaine catabolic process","termid":"GO:0006579"},{"relation_name":"is_a","term_name":"ergothioneine metabolic process","termid":"GO:0052698"},{"relation_name":"is_a","term_name":"cellular modified histidine catabolic process","termid":"GO:0052702"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0044248"},{"rel_name":"is_a","termid":"GO:0006790"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0044248","GO:0006790","GO:0008150","GO:0044281"],"is_obsolete":false,"name":"ergothioneine catabolic process","synonyms":[{"name":"(2S)-3-(2-mercapto-1H-imidazol-5-yl)-2-(trimethylazaniumyl)propanoate catabolic process","type":"exact"},{"name":"2-mercaptoergothioneine trimethylbetaine breakdown","type":"exact"},{"name":"2-mercaptoergothioneine trimethylbetaine catabolic process","type":"exact"},{"name":"2-mercaptoergothioneine trimethylbetaine catabolism","type":"exact"},{"name":"2-mercaptoergothioneine trimethylbetaine degradation","type":"exact"},{"name":"ergothioneine breakdown","type":"exact"},{"name":"ergothioneine catabolism","type":"exact"},{"name":"ergothioneine degradation","type":"exact"}],"termid":"GO:0052700"}


id: GO:0038131
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Combining with a neuregulin, a member of the EGF family of growth factors, and transmitting the signal from one side of the membrane to the other to initiate a change in cell activity.","definition_xrefs":["GOC:signaling","GOC:bf","PMID:16460914","PMID:20672328"],"direct_ancestors":[{"relation_name":"is_a","term_name":"transmembrane signaling receptor activity","termid":"GO:0004888"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0038023"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0038023","GO:0003674"],"is_obsolete":false,"name":"neuregulin receptor activity","synonyms":[{"name":"NRG receptor activity","type":"exact"},{"name":"NRG1 receptor activity","type":"narrow"},{"name":"NRG2 receptor activity","type":"narrow"}],"termid":"GO:0038131"}


id: PR:O74346
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- map4 gene.","definition_xrefs":["PRO:DNx","UniProtKB:O74346"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"P cell-type agglutination protein map4 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC21D10.06c","synonyms":[{"name":"Spom972h-map4","type":"exact"}],"termid":"PR:O74346"}


id: GO:0050602
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: O2 + NADPH + H+ + 7-O-methylluteone = H2O + NADP+ + dihydrofurano derivatives.","definition_xrefs":["EC:1.14.99.34","MetaCyc:1.14.99.34-RXN"],"gene_count":0,"genotype_count":0,"name":"obsolete monoprenyl isoflavone epoxidase activity (obsolete GO:0050602)","synonyms":[{"name":"7-O-methylluteone,NADPH:O2 oxidoreductase activity","type":"related"},{"name":"7-O-methylluteone:O2 oxidoreductase activity","type":"related"},{"name":"monoprenyl isoflavone monooxygenase activity","type":"related"}],"termid":"GO:0050602"}


id: GO:0100047
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any transcription from RNA polymerase II promoter process that negatively regulates inositol biosynthetic process.","definition_xrefs":["GOC:obol","GOC:cjm"],"gene_count":0,"genotype_count":0,"name":"obsolete negative regulation of inositol biosynthetic process by transcription from RNA polymerase II promoter (obsolete GO:0100047)","termid":"GO:0100047"}


id: PBO:0041992
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"coiled-coil domain containing 38","termid":"PBO:0041992"}


id: PBO:0056833
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MGAT2 pseudogene 2","termid":"PBO:0056833"}


id: PBO:0001579
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"AP-3 adaptor complex subunit Apl6 (predicted)","termid":"PBO:0001579"}


id: PBO:0035871
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_histone_H3-K9_methylation_at_telomere_during_vegetative_growth","termid":"PBO:0035871"}


id: GO:0006130
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. (Was not defined before being made obsolete).","definition_xrefs":["GOC:ai"],"gene_count":0,"genotype_count":0,"name":"obsolete 6-phosphofructokinase reduction (obsolete GO:0006130)","synonyms":[{"name":"6-phosphofructokinase reduction","type":"exact"}],"termid":"GO:0006130"}


id: PBO:0029030
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_protein_localization_to_mitotic_spindle_pole_body_during_interphase","termid":"PBO:0029030"}


id: GO:0070535
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. A histone ubiquitination process in which a polymer of ubiquitin, formed by linkages between lysine residues at position 63 of the ubiquitin monomers, is added to a lysine residue in histone H2A or the variant H2AX.","definition_xrefs":["GOC:mah","PMID:18430235"],"gene_count":0,"genotype_count":0,"name":"obsolete histone H2A K63-linked ubiquitination (obsolete GO:0070535)","termid":"GO:0070535"}


id: FYPO:0002283
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"OBSOLETE. A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the phosphorylation of tyrosine residues in one or more specific proteins, or of specific protein sites, does not occur during a cellular response to heat.","definition_xrefs":["PomBase:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete abolished protein tyrosine phosphorylation during cellular response to heat (obsolete FYPO:0002283)","synonyms":[{"name":"abolished protein tyrosine phosphorylation during cellular response to heat during mitotic cell cycle","type":"related"},{"name":"abolished protein tyrosine phosphorylation during cellular response to heat during vegetative growth","type":"exact"},{"name":"abolished protein tyrosine phosphorylation during cellular response to heat shock","type":"narrow"},{"name":"protein phosphorylation abolished during cellular response to heat","type":"exact"}],"termid":"FYPO:0002283"}


id: PBO:0070090
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U7 small nuclear 4 pseudogene","termid":"PBO:0070090"}


id: PBO:0080461
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"V-set and transmembrane domain containing 5","termid":"PBO:0080461"}


id: GO:0051311
data:
  {"annotated_genes":["SJAG_05319","SJAG_02731","SJAG_01211","SJAG_04508","SJAG_05220","SJAG_03220","SJAG_01805","SJAG_03926","SJAG_00794","SJAG_00918","SJAG_02346","SJAG_00678","SJAG_02814","SJAG_04259","SJAG_05019","SJAG_03437","SJAG_03989","SJAG_01371","SJAG_03217","SJAG_03683","SJAG_01837","SJAG_01278","SJAG_05295","SJAG_00418","SJAG_07002","SJAG_01224","SJAG_04076","SJAG_01775","SJAG_05266","SJAG_03698","SJAG_03327"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[112673],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0051316"},{"annotations":[83303,89414],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0051456"},{"annotations":[113065,109747,85761,103654,111513,89379,94301,97048,83247],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0031619"},{"annotations":[112688],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:1904967"},{"annotations":[90929,84602,110068,112929,98165,111920,85212,91186,96219,103328,104736,89395,109175,104996,86469,93566,97052,103660,106225,101260,105761,106184,94309],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0051455"}]},"cv_name":"biological_process","definition":"A chromosome localization process whereby chromosomes are positioned in a specific order and orientation at the metaphase plate (spindle equator), during meiotic chromosome segregation. This alignment ensures that each daughter cell will receive the correct number of chromosomes during cell division.","definition_xrefs":["GOC:vw"],"direct_ancestors":[{"relation_name":"is_a","term_name":"metaphase chromosome alignment","termid":"GO:0051310"},{"relation_name":"is_a","term_name":"meiotic cell cycle process","termid":"GO:1903046"},{"relation_name":"part_of","term_name":"meiotic chromosome segregation","termid":"GO:0045132"}],"gene_count":31,"genes_by_uniquename":{"SJAG_00418":null,"SJAG_00678":null,"SJAG_00794":null,"SJAG_00918":null,"SJAG_01211":null,"SJAG_01224":null,"SJAG_01278":null,"SJAG_01371":null,"SJAG_01775":null,"SJAG_01805":null,"SJAG_01837":null,"SJAG_02346":null,"SJAG_02731":null,"SJAG_02814":null,"SJAG_03217":null,"SJAG_03220":null,"SJAG_03327":null,"SJAG_03437":null,"SJAG_03683":null,"SJAG_03698":null,"SJAG_03926":null,"SJAG_03989":null,"SJAG_04076":null,"SJAG_04259":null,"SJAG_04508":null,"SJAG_05019":null,"SJAG_05220":null,"SJAG_05266":null,"SJAG_05295":null,"SJAG_05319":null,"SJAG_07002":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0007049"},{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"part_of","termid":"GO:0140013"}],"interesting_parent_ids":["GO:0140013","GO:0051179","GO:0008150","GO:0007049"],"is_obsolete":false,"name":"meiotic metaphase chromosome alignment","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"metaphase plate congression during meiosis","type":"exact"}],"termid":"GO:0051311","terms_by_termid":{"GO:0031619":null,"GO:0051316":null,"GO:0051455":null,"GO:0051456":null,"GO:1904967":null}}


id: GO:0072728
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a Gentian violet stimulus.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to organic substance","termid":"GO:0010033"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"response to Gentian violet","synonyms":[{"name":"response to crystal violet","type":"exact"},{"name":"response to {4-[Bis-(4-dimethylamino-phenyl)-methylene]-cyclohexa-2,5-dienylidene}-dimethyl-ammonium chloride","type":"exact"}],"termid":"GO:0072728"}


id: PBO:0039785
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"aquaporin 12A","termid":"PBO:0039785"}


id: GO:0046186
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of acetaldehyde, a colorless, flammable liquid intermediate in the metabolism of alcohol.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"acetaldehyde metabolic process","termid":"GO:0006117"},{"relation_name":"is_a","term_name":"aldehyde biosynthetic process","termid":"GO:0046184"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"acetaldehyde biosynthetic process","synonyms":[{"name":"acetaldehyde anabolism","type":"exact"},{"name":"acetaldehyde biosynthesis","type":"exact"},{"name":"acetaldehyde formation","type":"exact"},{"name":"acetaldehyde synthesis","type":"exact"}],"termid":"GO:0046186"}


id: GO:0032131
data:
  {"annotated_genes":["SJAG_01971","SJAG_04778"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[97294],"is_not":false,"summary":null,"term":"GO:0032131"},{"annotations":[83613],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0032132"}]},"cv_name":"molecular_function","definition":"Binding to an alkylated residue in DNA.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"damaged DNA binding","termid":"GO:0003684"}],"gene_count":2,"genes_by_uniquename":{"SJAG_01971":null,"SJAG_04778":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003677"}],"interesting_parent_ids":["GO:0003677","GO:0003674","GO:0005488"],"is_obsolete":false,"name":"alkylated DNA binding","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0032131","terms_by_termid":{"GO:0032131":null,"GO:0032132":null}}


id: PBO:0003675
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"C2 domain protein Fic1","termid":"PBO:0003675"}


id: PBO:0049806
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"histone deacetylase 1 pseudogene 1","termid":"PBO:0049806"}


id: PBO:0057179
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 330","termid":"PBO:0057179"}


id: PBO:0056476
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microtubule associated tyrosine carboxypeptidase 2","termid":"PBO:0056476"}


id: PBO:0004016
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MutS protein homolog 2","termid":"PBO:0004016"}


id: PBO:0057636
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 1226","termid":"PBO:0057636"}


id: MOD:00634
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"modification from Unimod Chemical derivative","definition_xrefs":["Unimod:324","PubMed:770170"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Unimod","termid":"MOD:00003"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dimethyl 3,3'-dithiobispropionimidate","synonyms":[{"name":"DTBP","type":"related"},{"name":"dimethyl 3,3'-dithiobispropionimidate","type":"related"}],"termid":"MOD:00634"}


id: PBO:0069776
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 1060, pseudogene","termid":"PBO:0069776"}


id: GO:1905454
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of myeloid progenitor cell differentiation.","definition_xrefs":["GO_REF:0000058","GOC:TermGenie","PMID:27010503"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of hematopoietic progenitor cell differentiation","termid":"GO:1901533"},{"relation_name":"is_a","term_name":"regulation of myeloid progenitor cell differentiation","termid":"GO:1905453"},{"relation_name":"negatively_regulates","term_name":"myeloid progenitor cell differentiation","termid":"GO:0002318"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of myeloid progenitor cell differentiation","synonyms":[{"name":"down regulation of myeloid progenitor cell differentiation","type":"exact"},{"name":"down-regulation of myeloid progenitor cell differentiation","type":"exact"},{"name":"downregulation of myeloid progenitor cell differentiation","type":"exact"},{"name":"inhibition of myeloid progenitor cell differentiation","type":"narrow"}],"termid":"GO:1905454"}


id: PBO:0041348
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chromosome 3 open reading frame 84","termid":"PBO:0041348"}


id: GO:0003718
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Any activity that brings about termination of transcription by RNA polymerase III.","definition_xrefs":["GOC:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete RNA polymerase III transcription termination factor activity (obsolete GO:0003718)","synonyms":[{"name":"Pol III transcription termination factor activity","type":"exact"},{"name":"RNA polymerase III transcription termination factor activity","type":"exact"}],"termid":"GO:0003718"}


id: GO:0150068
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of tubulin deacetylase activity.","definition_xrefs":["GOC:bc","GOC:aruk"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of tubulin deacetylation","termid":"GO:0090044"},{"relation_name":"is_a","term_name":"positive regulation of deacetylase activity","termid":"GO:0090045"},{"relation_name":"is_a","term_name":"regulation of tubulin deacetylase activity","termid":"GO:0150067"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of tubulin deacetylase activity","termid":"GO:0150068"}


id: FYPO:0003181
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which generation of double-strand breaks at defined hotspots throughout the genome during meiosis I does not occur.","definition_xrefs":["GO:0042138","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal meiotic DNA double-strand break formation","termid":"FYPO:0003564"},{"relation_name":"is_a","term_name":"abolished cellular process","termid":"FYPO:0005449"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000293"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0000293","FYPO:0000002","FYPO:0000631","FYPO:0001985"],"is_obsolete":false,"name":"abolished meiotic DNA double-strand break formation","synonyms":[{"name":"absent meiotic DNA double-strand break formation","type":"exact"},{"name":"meiotic DNA double-strand break formation abolished","type":"exact"}],"termid":"FYPO:0003181"}


id: GO:0048735
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which the anatomical structures of a haltere are generated and organized.","definition_xrefs":["GOC:rc","GOC:jid"],"direct_ancestors":[{"relation_name":"is_a","term_name":"imaginal disc-derived appendage morphogenesis","termid":"GO:0035114"},{"relation_name":"is_a","term_name":"post-embryonic appendage morphogenesis","termid":"GO:0035120"},{"relation_name":"part_of","term_name":"haltere disc morphogenesis","termid":"GO:0007481"},{"relation_name":"part_of","term_name":"haltere development","termid":"GO:0007482"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"haltere morphogenesis","termid":"GO:0048735"}


id: PBO:0048763
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"GDP-mannose 4,6-dehydratase","termid":"PBO:0048763"}


id: PBO:0051152
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"immunoglobulin heavy variable 3-32 (pseudogene)","termid":"PBO:0051152"}


id: PBO:0089678
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CCR4-Not complex 3'-5'-exoribonuclease subunit 6","termid":"PBO:0089678"}


id: PBO:0003759
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nucleolar RNA Z15","termid":"PBO:0003759"}


id: PBO:0040842
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"BLK proto-oncogene, Src family tyrosine kinase","termid":"PBO:0040842"}


id: PBO:0067640
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 813, pseudogene","termid":"PBO:0067640"}


id: PBO:0074995
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nucleolar RNA, C/D box 115-6","termid":"PBO:0074995"}


id: PBO:0065839
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RAB9A, member RAS oncogene family pseudogene 4","termid":"PBO:0065839"}


id: GO:0090042
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The removal of an acetyl group from tubulin. An acetyl group is CH3CO-, derived from acetic [ethanoic] acid.","definition_xrefs":["GOC:BHF","GOC:tb","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein deacetylation","termid":"GO:0006476"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"tubulin deacetylation","termid":"GO:0090042"}


id: GO:0030168
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A series of progressive, overlapping events triggered by exposure of the platelets to subendothelial tissue. These events include shape change, adhesiveness, aggregation, and release reactions. When carried through to completion, these events lead to the formation of a stable hemostatic plug.","direct_ancestors":[{"relation_name":"is_a","term_name":"cell activation","termid":"GO:0001775"},{"relation_name":"part_of","term_name":"blood coagulation","termid":"GO:0007596"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"platelet activation","synonyms":[{"name":"blood coagulation, platelet activation","type":"exact"}],"termid":"GO:0030168"}


id: GO:0047992
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: erythro-5-hydroxy-L-lysine + GTP = 5-phosphonooxy-L-lysine + GDP + 2 H+.","definition_xrefs":["EC:2.7.1.81","RHEA:19049"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phosphotransferase activity, alcohol group as acceptor","termid":"GO:0016773"},{"relation_name":"is_a","term_name":"amino acid kinase activity","termid":"GO:0019202"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016301"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003824","GO:0016301","GO:0003674","GO:0016740"],"is_obsolete":false,"name":"hydroxylysine kinase activity","secondary_identifiers":["Reactome:R-HSA-6788611","KEGG_REACTION:R03378","MetaCyc:HYDROXYLYSINE-KINASE-RXN"],"synonyms":[{"name":"GTP:5-hydroxy-L-lysine O-phosphotransferase activity","type":"related"},{"name":"guanosine triphosphate:5-hydroxy-L-lysine O-phosphotransferase activity","type":"related"},{"name":"hydroxylysine kinase (phosphorylating)","type":"related"}],"termid":"GO:0047992"}


id: GO:1901199
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any positive regulation of calcium ion transport into cytosol that is involved in cellular response to salt stress.","definition_xrefs":["GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of calcium ion transport into cytosol","termid":"GO:0010524"},{"relation_name":"part_of","term_name":"cellular response to salt stress","termid":"GO:0071472"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"positively_regulates","termid":"GO:0006810"},{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"positively_regulates","termid":"GO:0055085"},{"rel_name":"regulates","termid":"GO:0055085"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0055085","GO:0008150","GO:0006810"],"is_obsolete":false,"name":"positive regulation of calcium ion transport into cytosol involved in cellular response to salt stress","synonyms":[{"name":"positive regulation of calcium ion transport into cytosol involved in cellular response to ionic osmotic stress","type":"exact"},{"name":"positive regulation of calcium ion transport into cytosol involved in cellular salinity response","type":"exact"}],"termid":"GO:1901199"}


id: PBO:0038759
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ACTR3B pseudogene 4","termid":"PBO:0038759"}


id: PBO:0083961
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"General transcriptional co-repressor; acts together with Tup1p; also acts as part of a transcriptional co-activator complex that recruits the SWI/SNF and SAGA complexes to promoters; can form the prion [OCT+]","termid":"PBO:0083961"}


id: PBO:0064917
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PPP4R2 pseudogene 6","termid":"PBO:0064917"}


id: PBO:0041993
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"coiled-coil domain containing 39","termid":"PBO:0041993"}


id: PBO:0011066
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase family or domain","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RecQ family helicase","termid":"PBO:0011066"}


id: PBO:0056807
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"major facilitator superfamily domain containing 4A","termid":"PBO:0056807"}


id: GO:0032726
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate, or extent of hepatocyte growth factor production.","definition_xrefs":["PMID:1838014","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of cytokine production","termid":"GO:0001819"},{"relation_name":"is_a","term_name":"regulation of hepatocyte growth factor production","termid":"GO:0032646"},{"relation_name":"is_a","term_name":"positive regulation of protein metabolic process","termid":"GO:0051247"},{"relation_name":"positively_regulates","term_name":"hepatocyte growth factor production","termid":"GO:0032605"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"positively_regulates","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0010467","GO:0008150"],"is_obsolete":false,"name":"positive regulation of hepatocyte growth factor production","secondary_identifiers":["GO:0048177"],"synonyms":[{"name":"activation of hepatocyte growth factor production","type":"narrow"},{"name":"positive regulation of HGF production","type":"exact"},{"name":"positive regulation of hepatocyte growth factor biosynthetic process","type":"narrow"},{"name":"positive regulation of scatter factor production","type":"exact"},{"name":"stimulation of hepatocyte growth factor production","type":"narrow"},{"name":"up regulation of hepatocyte growth factor production","type":"exact"},{"name":"up-regulation of hepatocyte growth factor production","type":"exact"},{"name":"upregulation of hepatocyte growth factor production","type":"exact"}],"termid":"GO:0032726"}


id: PBO:0049885
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"HERC2 pseudogene 4","termid":"PBO:0049885"}


id: GO:0019513
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of lactose, catalyzed by the enzyme glucoside 3-dehydrogenase.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"lactose catabolic process","termid":"GO:0005990"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0005975"}],"interesting_parent_ids":["GO:0008150","GO:0005975"],"is_obsolete":false,"name":"lactose catabolic process, using glucoside 3-dehydrogenase","secondary_identifiers":["MetaCyc:LACTOSEUTIL-PWY"],"synonyms":[{"name":"lactose breakdown, using glucoside 3-dehydrogenase","type":"exact"},{"name":"lactose degradation, using glucoside 3-dehydrogenase","type":"exact"}],"termid":"GO:0019513"}


id: PBO:0030206
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-viable_elongated_vegetative_cell","termid":"PBO:0030206"}


id: PBO:0067989
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 5S ribosomal pseudogene 291","termid":"PBO:0067989"}


id: GO:1905315
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any cell proliferation that is involved in endocardial cushion morphogenesis.","definition_xrefs":["GOC:rl","GOC:TermGenie","GO_REF:0000060","PMID:20652948","GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell proliferation involved in heart morphogenesis","termid":"GO:0061323"},{"relation_name":"part_of","term_name":"endocardial cushion morphogenesis","termid":"GO:0003203"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cell proliferation involved in endocardial cushion morphogenesis","termid":"GO:1905315"}


id: GO:0004572
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the hydrolysis of the terminal (1->3)- and (1->6)-linked alpha-D-mannose residues in the mannosyl-oligosaccharide Man(5)(GlcNAc)(3).","definition_xrefs":["EC:3.2.1.114"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mannosyl-oligosaccharide mannosidase activity","termid":"GO:0015924"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0016798"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016787","GO:0003674","GO:0003824","GO:0016798"],"is_obsolete":false,"name":"mannosyl-oligosaccharide 1,3-1,6-alpha-mannosidase activity","secondary_identifiers":["MetaCyc:3.2.1.114-RXN","Reactome:R-HSA-975814","RHEA:56052"],"synonyms":[{"name":"1,3-(1,6-)mannosyl-oligosaccharide alpha-D-mannohydrolase activity","type":"related"},{"name":"GlcNAc transferase I-dependent alpha1,3[alpha1,6]mannosidase activity","type":"related"},{"name":"Golgi alpha-mannosidase II","type":"related"},{"name":"ManII activity","type":"narrow"},{"name":"alpha-(1,3/6)-mannosidase activity","type":"related"},{"name":"alpha-D-mannosidase II","type":"related"},{"name":"alpha-mannosidase II","type":"related"},{"name":"exo-1,3-1,6-alpha-mannosidase activity","type":"related"},{"name":"mannosidase II activity","type":"narrow"},{"name":"mannosyl-oligosaccharide (1->3)-(1->6)-alpha-mannosidase activity","type":"exact"},{"name":"mannosyl-oligosaccharide (1->3,6)-alpha-mannosidase activity","type":"exact"},{"name":"mannosyl-oligosaccharide (1->3/6)-alpha-mannosidase activity","type":"exact"}],"termid":"GO:0004572"}


id: GO:0046237
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The chemical reactions and pathways resulting in the formation of phenanthrene, a tricyclic aromatic hydrocarbon.","definition_xrefs":["GOC:ai"],"gene_count":0,"genotype_count":0,"name":"obsolete phenanthrene biosynthetic process (obsolete GO:0046237)","synonyms":[{"name":"phenanthrene anabolism","type":"exact"},{"name":"phenanthrene biosynthesis","type":"exact"},{"name":"phenanthrene biosynthetic process","type":"exact"},{"name":"phenanthrene formation","type":"exact"},{"name":"phenanthrene synthesis","type":"exact"}],"termid":"GO:0046237"}


id: PBO:0040614
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"BAI1 associated protein 3","termid":"PBO:0040614"}


id: GO:0062163
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The aggregation, arrangement and bonding together of septins and associated proteins to form a tight ring-shaped structure that forms in the division plane at the junction between the mother cell and a pseudohyphal projection.","definition_xrefs":["PMID:29567712"],"direct_ancestors":[{"relation_name":"is_a","term_name":"septin ring assembly","termid":"GO:0000921"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0007010"},{"rel_name":"part_of","termid":"GO:0044085"},{"rel_name":"is_a","termid":"GO:0065003"}],"interesting_parent_ids":["GO:0065003","GO:0007010","GO:0044085","GO:0008150"],"is_obsolete":false,"name":"pseudohyphal septin ring assembly","termid":"GO:0062163"}


id: PATO:0000289
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0000289 respiratory rate (obsolete PATO:0000289)","termid":"PATO:0000289"}


id: PBO:0058991
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"motilin receptor","termid":"PBO:0058991"}


id: PBO:0080936
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"YY1 transcription factor pseudogene 2","termid":"PBO:0080936"}


id: PBO:0001386
data:
  {"annotation_feature_type":"gene","cv_name":"misc","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"function depends on recruitment to the spindle pole body","termid":"PBO:0001386"}


id: PBO:0086225
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein that functions in mitochondrial copper homeostasis; mitochondrial intermembrane space protein; essential for functional cytochrome oxidase expression; homologous to Cox17p; contains twin cysteine-x9-cysteine motifs","termid":"PBO:0086225"}


id: GO:0015828
data:
  {"annotated_genes":["SJAG_03400","SJAG_03256"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[63226],"is_not":false,"summary":null,"term":"GO:0015828"},{"annotations":[99608],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0090514"}]},"cv_name":"biological_process","definition":"The directed movement of tyrosine, 2-amino-3-(4-hydroxyphenyl)propanoic acid, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"amino acid transport","termid":"GO:0006865"},{"relation_name":"is_a","term_name":"aromatic amino acid transport","termid":"GO:0015801"}],"gene_count":2,"genes_by_uniquename":{"SJAG_03256":null,"SJAG_03400":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0006810","GO:0008150","GO:0051179"],"is_obsolete":false,"name":"tyrosine transport","references_by_uniquename":{"GO_REF:0000107":null,"GO_REF:0000108":null},"synonyms":[{"name":"L-tyrosine transport","type":"narrow"}],"termid":"GO:0015828","terms_by_termid":{"GO:0015828":null,"GO:0090514":null}}


id: GO:0030954
data:
  {"annotated_genes":["SJAG_02737"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[112951],"is_not":false,"summary":null,"term":"GO:0030954"}]},"cv_name":"biological_process","definition":"The 'de novo' formation of an astral microtubule, in which tubulin heterodimers form metastable oligomeric aggregates, some of which go on to support formation of a complete microtubule.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"astral microtubule organization","termid":"GO:0030953"},{"relation_name":"is_a","term_name":"microtubule nucleation by microtubule organizing center","termid":"GO:0051418"}],"gene_count":1,"genes_by_uniquename":{"SJAG_02737":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0000226"},{"rel_name":"part_of","termid":"GO:0007049"},{"rel_name":"part_of","termid":"GO:0065003"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0007010"},{"rel_name":"is_a","termid":"GO:0007010"},{"rel_name":"is_a","termid":"GO:0000226"},{"rel_name":"part_of","termid":"GO:0044085"}],"interesting_parent_ids":["GO:0007049","GO:0007010","GO:0008150","GO:0065003","GO:0000226","GO:0044085"],"is_obsolete":false,"name":"astral microtubule nucleation","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0030954","terms_by_termid":{"GO:0030954":null}}


id: PBO:0055279
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2706","termid":"PBO:0055279"}


id: PBO:0063365
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"proprotein convertase subtilisin/kexin type 5","termid":"PBO:0063365"}


id: PR:O42936
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- las1 gene.","definition_xrefs":["PRO:DNx","UniProtKB:O42936"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pre-rRNA-processing protein las1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC16C6.12c","synonyms":[{"name":"Spom972h-las1","type":"exact"}],"termid":"PR:O42936"}


id: PBO:0061040
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NIPA2 pseudogene 1","termid":"PBO:0061040"}


id: PBO:0069974
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 1269, pseudogene","termid":"PBO:0069974"}


id: PBO:0046466
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"endoplasmic reticulum aminopeptidase 2","termid":"PBO:0046466"}


id: GO:0019612
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of 4-toluenecarboxylate, 4-methylbenzenecarboxylate, the anion of carboxylic acid attached to a methylbenzene molecule.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"aromatic compound catabolic process","termid":"GO:0019439"},{"relation_name":"is_a","term_name":"4-toluenecarboxylate metabolic process","termid":"GO:0019611"},{"relation_name":"is_a","term_name":"monocarboxylic acid catabolic process","termid":"GO:0072329"},{"relation_name":"is_a","term_name":"organic cyclic compound catabolic process","termid":"GO:1901361"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0044248"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0044248","GO:0044281","GO:0008150"],"is_obsolete":false,"name":"4-toluenecarboxylate catabolic process","secondary_identifiers":["MetaCyc:4TOLCARBDEG-PWY"],"synonyms":[{"name":"4-toluenecarboxylate breakdown","type":"exact"},{"name":"4-toluenecarboxylate catabolism","type":"exact"},{"name":"4-toluenecarboxylate degradation","type":"exact"},{"name":"p-toluate catabolic process","type":"exact"},{"name":"p-toluate catabolism","type":"exact"}],"termid":"GO:0019612"}


id: GO:1902216
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of interleukin-4-mediated signaling pathway.","definition_xrefs":["PMID:17210636","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of cytokine-mediated signaling pathway","termid":"GO:0001961"},{"relation_name":"is_a","term_name":"regulation of interleukin-4-mediated signaling pathway","termid":"GO:1902214"},{"relation_name":"positively_regulates","term_name":"interleukin-4-mediated signaling pathway","termid":"GO:0035771"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"positively_regulates","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"positive regulation of interleukin-4-mediated signaling pathway","synonyms":[{"name":"activation of IL-4-mediated signaling pathway","type":"narrow"},{"name":"activation of interleukin-4-mediated signaling pathway","type":"narrow"},{"name":"activation of interleukin-4-mediated signalling pathway","type":"narrow"},{"name":"positive regulation of IL-4-mediated signaling pathway","type":"exact"},{"name":"positive regulation of interleukin-4-mediated signalling pathway","type":"exact"},{"name":"up regulation of IL-4-mediated signaling pathway","type":"exact"},{"name":"up regulation of interleukin-4-mediated signaling pathway","type":"exact"},{"name":"up regulation of interleukin-4-mediated signalling pathway","type":"exact"},{"name":"up-regulation of IL-4-mediated signaling pathway","type":"exact"},{"name":"up-regulation of interleukin-4-mediated signaling pathway","type":"exact"},{"name":"up-regulation of interleukin-4-mediated signalling pathway","type":"exact"},{"name":"upregulation of IL-4-mediated signaling pathway","type":"exact"},{"name":"upregulation of interleukin-4-mediated signaling pathway","type":"exact"},{"name":"upregulation of interleukin-4-mediated signalling pathway","type":"exact"}],"termid":"GO:1902216"}


id: PBO:0085218
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Palmitoyltransferase subunit; this complex adds a palmitoyl lipid moiety to heterolipidated substrates such as Ras1p and Ras2p through a thioester linkage; palmitoylation is required for Ras2p membrane localization; Palmitoyltransferase is composed of Shr5p and Erf2","termid":"PBO:0085218"}


id: PBO:0072311
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein S25 pseudogene 8","termid":"PBO:0072311"}


id: PBO:0083023
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Deleted ORF; does not encode a protein; included in the original annotation of Chromosome III but later withdrawn","termid":"PBO:0083023"}


id: PBO:0070755
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L10 pseudogene 11","termid":"PBO:0070755"}


id: PBO:0049452
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"GXYLT1 pseudogene 6","termid":"PBO:0049452"}


id: PBO:0048322
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glyceraldehyde 3 phosphate dehydrogenase pseudogene 33","termid":"PBO:0048322"}


id: FYPO:0004121
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A transport phenotype observed in the vegetative growth phase of the life cycle in which the import of protein into the nucleus is normal (i.e. indistinguishable from wild type). Import of all proteins or a specific protein may be assayed.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal nuclear import","termid":"FYPO:0000516"},{"relation_name":"is_a","term_name":"normal protein localization to nucleus during vegetative growth","termid":"FYPO:0000838"},{"relation_name":"is_a","term_name":"normal intracellular protein transport during vegetative growth","termid":"FYPO:0005397"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001312"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000257"}],"interesting_parent_ids":["FYPO:0000257","FYPO:0001320","FYPO:0000002","FYPO:0001312","FYPO:0000138"],"is_obsolete":false,"name":"normal protein import into nucleus during vegetative growth","synonyms":[{"name":"normal nucleocytoplasmic protein import during vegetative growth","type":"related"},{"name":"normal protein import into nucleus during mitotic cell cycle","type":"related"}],"termid":"FYPO:0004121"}


id: PBO:0048834
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"G protein nucleolar 2","termid":"PBO:0048834"}


id: GO:0008922
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: a long-chain fatty acid + ATP + holo-[ACP] = a long-chain fatty acyl-[ACP] + AMP + diphosphate. A long-chain fatty acid has an aliphatic tail containing 13 to 22 carbons.","definition_xrefs":["EC:6.2.1.20"],"direct_ancestors":[{"relation_name":"is_a","term_name":"fatty acid ligase activity","termid":"GO:0015645"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016874"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003824","GO:0016874","GO:0003674"],"is_obsolete":false,"name":"long-chain fatty acid [acyl-carrier-protein] ligase activity","secondary_identifiers":["MetaCyc:ACYLACPSYNTH-RXN","RHEA:45588","GO:0010300","KEGG_REACTION:R07325"],"synonyms":[{"name":"acyl-ACP synthetase activity","type":"exact"},{"name":"acyl-[acyl-carrier-protein] synthetase activity","type":"related"},{"name":"acyl-acyl carrier protein synthetase","type":"broad"},{"name":"acyl-acyl-carrier-protein synthetase activity","type":"related"},{"name":"acyl-acyl-carrier-proteinsynthetase activity","type":"related"},{"name":"long-chain fatty acid-[acyl-carrier-protein] ligase activity","type":"exact"},{"name":"long-chain-fatty-acid-ACP ligase activity","type":"exact"},{"name":"long-chain-fatty-acid-[acyl-carrier protein] ligase activity","type":"exact"},{"name":"long-chain-fatty-acid-[acyl-carrier-protein] ligase activity","type":"exact"},{"name":"long-chain-fatty-acid-acyl-carrier-protein ligase activity","type":"related"},{"name":"long-chain-fatty-acid:acyl-carrier-protein ligase (AMP-forming) activity","type":"related"},{"name":"stearoyl-ACP synthetase activity","type":"related"}],"termid":"GO:0008922"}


id: PBO:0039695
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"apurinic/apyrimidinic endodeoxyribonuclease 1","termid":"PBO:0039695"}


id: PBO:0079580
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ubiquitin conjugating enzyme E2 C pseudogene 1","termid":"PBO:0079580"}


id: FYPO:0005656
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which iron ion binding by a gene product does not occur. The affected gene product may be encoded by the mutated gene, or by a different gene.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"binding phenotype","termid":"FYPO:0001092"},{"relation_name":"is_a","term_name":"abolished molecular function","termid":"FYPO:0005446"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0000707"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000652","FYPO:0000707"],"is_obsolete":false,"name":"abolished iron ion binding","synonyms":[{"name":"abolished iron binding","type":"exact"},{"name":"iron ion binding abolished","type":"exact"}],"termid":"FYPO:0005656"}


id: PBO:0054839
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2253","termid":"PBO:0054839"}


id: GO:0090363
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the rate, frequency, or extent of the aggregation, arrangement and bonding together of a mature, active 20S proteasome core particle complex that does not contain any regulatory particles.","definition_xrefs":["GOC:dph","GOC:elh","GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of proteasome assembly","termid":"GO:0090364"},{"relation_name":"regulates","term_name":"proteasome core complex assembly","termid":"GO:0080129"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0044085"},{"rel_name":"regulates","termid":"GO:0065003"}],"interesting_parent_ids":["GO:0008150","GO:0044085","GO:0065003"],"is_obsolete":false,"name":"regulation of proteasome core complex assembly","termid":"GO:0090363"}


id: FYPO:0001805
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which adenine import into the cell is normal (i.e. indistinguishable from wild type).","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal transport","termid":"FYPO:0001071"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001312"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0000138"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0001312","FYPO:0000002","FYPO:0000257","FYPO:0000138"],"is_obsolete":false,"name":"normal adenine import","synonyms":[{"name":"normal adenine import across plasma membrane","type":"exact"},{"name":"normal adenine import during mitotic cell cycle","type":"related"},{"name":"normal adenine import during vegetative growth","type":"exact"},{"name":"normal adenine import into cell","type":"exact"},{"name":"normal adenine uptake","type":"exact"}],"termid":"FYPO:0001805"}


id: GO:0018120
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The transfer, from NAD, of ADP-ribose to peptidyl-arginine to form omega-N-(ADP-ribosyl)-L-arginine.","definition_xrefs":["RESID:AA0168"],"gene_count":0,"genotype_count":0,"name":"obsolete peptidyl-arginine ADP-ribosylation (obsolete GO:0018120)","termid":"GO:0018120"}


id: PBO:0065189
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"prospero homeobox 2","termid":"PBO:0065189"}


id: PBO:0004765
data:
  {"annotation_feature_type":"gene","cv_name":"name_description","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Mago Nashi Homolog","termid":"PBO:0004765"}


id: PBO:0026653
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_protein_localization_to_plasma_membrane_at_cell_division_site_during_vegetative_growth","termid":"PBO:0026653"}


id: PBO:0065267
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"proline rich 29","termid":"PBO:0065267"}


id: GO:1902318
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any synthesis of RNA primer that is involved in nuclear cell cycle DNA replication.","definition_xrefs":["GOC:TermGenie","GOC:mtg_cell_cycle"],"gene_count":0,"genotype_count":0,"name":"obsolete synthesis of RNA primer involved in nuclear cell cycle DNA replication (obsolete GO:1902318)","synonyms":[{"name":"DNA replication, synthesis of RNA primer involved in DNA replication during S phase","type":"related"},{"name":"DNA replication, synthesis of RNA primer involved in DNA replication involved in S phase","type":"exact"},{"name":"DNA replication, synthesis of RNA primer involved in DNA replication involved in S-phase","type":"exact"},{"name":"replication priming involved in DNA replication during S phase","type":"related"},{"name":"replication priming involved in DNA replication involved in S phase","type":"related"},{"name":"replication priming involved in DNA replication involved in S-phase","type":"related"},{"name":"replication priming involved in nuclear cell cycle DNA replication","type":"related"}],"termid":"GO:1902318"}


id: GO:0034323
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the transfer of a butyl group to an oxygen atom on the acceptor molecule.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"O-acyltransferase activity","termid":"GO:0008374"},{"relation_name":"is_a","term_name":"butanoyltransferase activity","termid":"GO:0034326"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016746"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016746","GO:0016740","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"O-butanoyltransferase activity","termid":"GO:0034323"}


id: PBO:0085397
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Plasma membrane (PM) ubiquitin ligase-substrate adaptor; involved in cell wall chitin deposition; ubiquitinates and down-regulates chitin synthase Chs3p abundance at PM via calcineurin/Crz1 signaling pathway which regulates RCR1 expression; delivered to PM by exomer complex using novel PM sorting motif; RCR1 has a paralog, RCR2, that arose from the whole genome duplication","termid":"PBO:0085397"}


id: GO:0009465
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. (Was not defined before being made obsolete).","definition_xrefs":["GOC:ai"],"gene_count":0,"genotype_count":0,"name":"obsolete soluble cytochrome b562 (obsolete GO:0009465)","synonyms":[{"name":"soluble cytochrome b562","type":"exact"}],"termid":"GO:0009465"}


id: FYPO:0007287
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the galactosylation of one or more specific proteins, or of specific protein sites, occurs to a lower extent than normal. Protein galactosylation is the addition of a galactose residue to a protein amino acid.","definition_xrefs":["GO:0042125","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased protein glycosylation during vegetative growth","termid":"FYPO:0001911"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0002494"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0002274"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0002274","FYPO:0001985","FYPO:0005447","FYPO:0001320","FYPO:0002494"],"is_obsolete":false,"name":"decreased protein galactosylation during vegetative growth","synonyms":[{"name":"decreased protein galactosylation during mitotic cell cycle","type":"related"},{"name":"reduced protein galactosylation during vegetative growth","type":"exact"}],"termid":"FYPO:0007287"}


id: RO:HOM0000029
data:
  {"annotation_feature_type":"gene","cv_name":"relationship","definition":"Heterochronous homology that is produced by a retention in adults of a species of traits previously seen only in juveniles.","definition_xrefs":["ISBN:978-0674639416"],"direct_ancestors":[{"relation_name":"is_a","term_name":"in_heterochronous_homology_relationship_with","termid":"RO:HOM0000028"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"in_paedomorphorsis_relationship_with","synonyms":[{"name":"juvenification","type":"exact"},{"name":"pedomorphosis","type":"exact"}],"termid":"RO:HOM0000029"}


id: PBO:0073897
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"solute carrier family 13 member 3","termid":"PBO:0073897"}


id: GO:0070899
data:
  {"annotated_genes":["SJAG_04113","SJAG_00358","SJAG_04367","SJAG_02302"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[88362,104324],"is_not":false,"summary":null,"term":"GO:0070899"},{"annotations":[89851,112970],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1990799"}]},"cv_name":"biological_process","definition":"The process in which a uridine in position 34 of a mitochondrial tRNA is post-transcriptionally modified.","definition_xrefs":["GOC:mah","GOC:mcc"],"direct_ancestors":[{"relation_name":"is_a","term_name":"tRNA wobble uridine modification","termid":"GO:0002098"},{"relation_name":"is_a","term_name":"mitochondrial tRNA modification","termid":"GO:0070900"}],"gene_count":4,"genes_by_uniquename":{"SJAG_00358":null,"SJAG_02302":null,"SJAG_04113":null,"SJAG_04367":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006399"},{"rel_name":"is_a","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0140053"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0008150","GO:0010467","GO:0140053","GO:0006399"],"is_obsolete":false,"name":"mitochondrial tRNA wobble uridine modification","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0070899","terms_by_termid":{"GO:0070899":null,"GO:1990799":null}}


id: PBO:0081789
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein 717","termid":"PBO:0081789"}


id: PBO:0071757
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein lateral stalk subunit P1 pseudogene 4","termid":"PBO:0071757"}


id: GO:0009794
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of replication and segregation of genetic material in the embryo.","definition_xrefs":["GOC:tb","GOC:dph","GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of mitotic cell cycle","termid":"GO:0007346"},{"relation_name":"regulates","term_name":"mitotic cell cycle, embryonic","termid":"GO:0045448"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0007049"}],"interesting_parent_ids":["GO:0008150","GO:0007049"],"is_obsolete":false,"name":"regulation of mitotic cell cycle, embryonic","synonyms":[{"name":"embryonic mitotic cell cycle modulation","type":"exact"},{"name":"embryonic mitotic cell cycle regulation","type":"exact"},{"name":"embryonic mitotic cell cycle regulator","type":"related"},{"name":"modulation of embryonic mitotic cell cycle progression","type":"exact"},{"name":"regulation of embryonic mitotic cell cycle","type":"exact"},{"name":"regulation of embryonic mitotic cell cycle progression","type":"exact"},{"name":"regulation of progression through embryonic mitotic cell cycle","type":"exact"}],"termid":"GO:0009794"}


id: PBO:0003770
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"translation initiation factor (predicted)","termid":"PBO:0003770"}


id: GO:1900633
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving pentadecane.","definition_xrefs":["GOC:TermGenie","GOC:mengo_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular alkane metabolic process","termid":"GO:0043446"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"pentadecane metabolic process","synonyms":[{"name":"pentadecane metabolism","type":"exact"}],"termid":"GO:1900633"}


id: PBO:0084305
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Iron-sulfur protein subunit of succinate dehydrogenase; the complex couples the oxidation of succinate to the transfer of electrons to ubiquinone as part of the TCA cycle and the mitochondrial respiratory chain; other members are Sdh1p, Sdh3p, and Sdh4p","termid":"PBO:0084305"}


id: PBO:0088256
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"serine/threonine protein phosphatase (Cdc14-related) Clp1/Flp1","termid":"PBO:0088256"}


id: GO:0031638
data:
  {"annotated_genes":["SJAG_01868","SJAG_04785","SJAG_02432"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[82900,87307,93293],"is_not":false,"summary":null,"term":"GO:0031638"}]},"cv_name":"biological_process","definition":"The proteolytic processing of an inactive enzyme to an active form.","definition_xrefs":["GOC:hjd"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein processing","termid":"GO:0016485"}],"gene_count":3,"genes_by_uniquename":{"SJAG_01868":null,"SJAG_02432":null,"SJAG_04785":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0051604"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0051604","GO:0008150","GO:0010467"],"is_obsolete":false,"name":"zymogen activation","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"zymogen activation by proteolytic cleavage","type":"exact"}],"termid":"GO:0031638","terms_by_termid":{"GO:0031638":null}}


id: PBO:0048391
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"GAS1 adjacent regulatory RNA","termid":"PBO:0048391"}


id: GO:0120218
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A quorum sensing process that is modulated by some interaction with a host cell or organism.","definition_xrefs":["GOC:krc","PMID:11780122","GOC:mlg","PMID:16630813"],"direct_ancestors":[{"relation_name":"is_a","term_name":"quorum sensing","termid":"GO:0009372"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"host interaction involved in quorum sensing","termid":"GO:0120218"}


id: GO:0044074
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The process in which a symbiont organism stops, prevents, or reduces the frequency, rate or extent of translation, the chemical reactions and pathways resulting in the formation of a protein, in its host organism.","definition_xrefs":["MITRE:tk"],"gene_count":0,"genotype_count":0,"name":"obsolete negative regulation by symbiont of host translation (obsolete GO:0044074)","synonyms":[{"name":"negative regulation of host translation by symbiont","type":"exact"}],"termid":"GO:0044074"}


id: PBO:0005162
data:
  {"annotation_feature_type":"gene","cv_name":"name_description","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RING finger protein","termid":"PBO:0005162"}


id: RO:HOM0000057
data:
  {"annotation_feature_type":"gene","cv_name":"relationship","definition":"Parallelism that involves morphologically very similar structures, occurring only within some members of a taxon and absent in the common ancestor (which possessed the developmental basis to develop this character).","definition_xrefs":["ISBN:0199141118"],"direct_ancestors":[{"relation_name":"is_a","term_name":"in_parallelism_relationship_with","termid":"RO:HOM0000005"},{"relation_name":"is_a","term_name":"in_syngeny_relationship_with","termid":"RO:HOM0000058"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"in_latent_homology_relationship_with","synonyms":[{"name":"apomorphic tendency","type":"exact"},{"name":"cryptic homology","type":"exact"},{"name":"homoiology","type":"related"},{"name":"homoplastic tendency","type":"related"},{"name":"latent homologous to","type":"exact"},{"name":"re-awakening","type":"related"},{"name":"underlying synapomorphy","type":"exact"}],"termid":"RO:HOM0000057"}


id: GO:0006266
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The re-formation of a broken phosphodiester bond in the DNA backbone, carried out by DNA ligase.","definition_xrefs":["ISBN:0815316194"],"direct_ancestors":[{"relation_name":"is_a","term_name":"DNA metabolic process","termid":"GO:0006259"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006259"}],"interesting_parent_ids":["GO:0006259","GO:0008150"],"is_obsolete":false,"name":"DNA ligation","termid":"GO:0006266"}


id: PBO:0067336
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 429, pseudogene","termid":"PBO:0067336"}


id: PBO:0083231
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Dubious open reading frame; unlikely to encode a functional protein, based on available experimental and comparative sequence data; completely within telomere TEL08L","termid":"PBO:0083231"}


id: PBO:0026954
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-elongated_monoseptate_vegetative_cell","termid":"PBO:0026954"}


id: GO:1900297
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of hexasaccharide transport.","definition_xrefs":["GOC:mengo_curators","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of transport","termid":"GO:0051049"},{"relation_name":"regulates","term_name":"hexasaccharide transport","termid":"GO:2001102"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0006810"],"is_obsolete":false,"name":"regulation of hexasaccharide transport","termid":"GO:1900297"}


id: PBO:0080149
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ventral anterior homeobox 1","termid":"PBO:0080149"}


id: GO:0097235
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that activates or increases the frequency, rate or extent of fatty acid beta-oxidation by activating or increasing the frequency, rate or extent of transcription from an RNA polymerase II promoter.","definition_xrefs":["PMID:1899286","GOC:dgf"],"gene_count":0,"genotype_count":0,"name":"obsolete positive regulation of fatty acid beta-oxidation by positive regulation of transcription from RNA polymerase II promoter (obsolete GO:0097235)","termid":"GO:0097235"}


id: PBO:0051896
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"integrin subunit alpha 5","termid":"PBO:0051896"}


id: GO:0071237
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a bacteriocin stimulus. A bacteriocin is a protein substance released by certain bacteria that kills but does not lyse closely related strains of bacteria. Specific bacteriocins attach to specific receptors on cell walls and induce specific metabolic block, e.g. cessation of nucleic acid or protein synthesis of oxidative phosphorylation.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to bacteriocin","termid":"GO:0046678"},{"relation_name":"is_a","term_name":"cellular response to antibiotic","termid":"GO:0071236"},{"relation_name":"is_a","term_name":"cellular response to organonitrogen compound","termid":"GO:0071417"},{"relation_name":"is_a","term_name":"cellular response to oxygen-containing compound","termid":"GO:1901701"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cellular response to bacteriocin","termid":"GO:0071237"}


id: GO:0046319
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of glucosylceramide.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of glucosylceramide biosynthetic process","termid":"GO:0046317"},{"relation_name":"is_a","term_name":"positive regulation of ceramide biosynthetic process","termid":"GO:2000304"},{"relation_name":"positively_regulates","term_name":"glucosylceramide biosynthetic process","termid":"GO:0006679"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"positively_regulates","termid":"GO:0006629"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0044085"},{"rel_name":"regulates","termid":"GO:0006629"}],"interesting_parent_ids":["GO:0006629","GO:0044085","GO:0008150"],"is_obsolete":false,"name":"positive regulation of glucosylceramide biosynthetic process","synonyms":[{"name":"upregulation of glucosylceramide biosynthetic process","type":"exact"},{"name":"activation of glucosylceramide biosynthetic process","type":"narrow"},{"name":"positive regulation of glucosylceramide anabolism","type":"exact"},{"name":"positive regulation of glucosylceramide biosynthesis","type":"exact"},{"name":"positive regulation of glucosylceramide formation","type":"exact"},{"name":"positive regulation of glucosylceramide synthesis","type":"exact"},{"name":"stimulation of glucosylceramide biosynthetic process","type":"narrow"},{"name":"up regulation of glucosylceramide biosynthetic process","type":"exact"},{"name":"up-regulation of glucosylceramide biosynthetic process","type":"exact"}],"termid":"GO:0046319"}


id: FYPO:0005989
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype that affects the localization of a protein in a cell during conjugation with cellular fusion. A protein may be observed in a place where it is not normally found, absent from a place where it is normally found, or both.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal protein localization","termid":"FYPO:0001370"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000138"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0005447","FYPO:0000138","FYPO:0001985"],"is_obsolete":false,"name":"abnormal protein localization during mating","synonyms":[{"name":"abnormal cellular protein localisation during mating","type":"exact"},{"name":"abnormal cellular protein localization during mating","type":"exact"},{"name":"abnormal protein localisation during mating","type":"exact"},{"name":"abnormal protein localization during conjugation with cellular fusion","type":"exact"}],"termid":"FYPO:0005989"}


id: GO:0003681
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to DNA in a bent conformation.","definition_xrefs":["GOC:jl","PMID:12627977"],"direct_ancestors":[{"relation_name":"is_a","term_name":"DNA binding","termid":"GO:0003677"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003677"}],"interesting_parent_ids":["GO:0003674","GO:0005488","GO:0003677"],"is_obsolete":false,"name":"bent DNA binding","termid":"GO:0003681"}


id: PBO:0048720
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glutaredoxin pseudogene 3","termid":"PBO:0048720"}


id: GO:0150103
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A neuroinflammatory response, occurring over several days, during which glial cells undergo nonspecific reactive changes in response to damage to the central nervous system (CNS); typically involves the proliferation or hypertrophy of different types of glial cells.","definition_xrefs":["GOC:bc","GOC:aruk","PMID:24462092"],"direct_ancestors":[{"relation_name":"is_a","term_name":"neuroinflammatory response","termid":"GO:0150076"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"reactive gliosis","synonyms":[{"name":"gliosis","type":"broad"}],"termid":"GO:0150103"}


id: FYPO:0004857
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which the observed rate of glucan endo-1,6-beta-glucosidase activity is increased.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased catalytic activity","termid":"FYPO:0000662"},{"relation_name":"is_a","term_name":"abnormal endo-1,6-beta-glucosidase activity","termid":"FYPO:0004856"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000707"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000654"},{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0000661"}],"interesting_parent_ids":["FYPO:0000707","FYPO:0000652","FYPO:0000661","FYPO:0001985","FYPO:0000654"],"is_obsolete":false,"name":"increased endo-1,6-beta-glucosidase activity","synonyms":[{"name":"increased glucan endo-1,6-beta-glucosidase activity","type":"exact"}],"termid":"FYPO:0004857"}


id: PR:O13716
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- agn1 gene.","definition_xrefs":["UniProtKB:O13716","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glucan endo-1,3-alpha-glucosidase agn1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC14C4.09","synonyms":[{"name":"Spom972h-agn1","type":"exact"},{"name":"endo-1,3-alpha-glucanase agn1 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:O13716"}


id: PBO:0029623
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_protein_kinase_activity_during_cellular_response_to_hydroxyurea","termid":"PBO:0029623"}


id: SO:0000262
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A tRNA sequence that has a histidine anticodon, and a 3' histidine binding region.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"derives_from","term_name":"histidine_tRNA_primary_transcript","termid":"SO:0000219"},{"relation_name":"is_a","term_name":"tRNA","termid":"SO:0000253"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"histidyl_tRNA","synonyms":[{"name":"histidyl tRNA","type":"exact"},{"name":"histidyl-transfer RNA","type":"exact"},{"name":"histidyl-transfer ribonucleic acid","type":"exact"}],"termid":"SO:0000262"}


id: PBO:0068180
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 5S ribosomal pseudogene 487","termid":"PBO:0068180"}


id: GO:0051543
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of elastin.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of glycoprotein biosynthetic process","termid":"GO:0010559"},{"relation_name":"regulates","term_name":"elastin biosynthetic process","termid":"GO:0051542"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of elastin biosynthetic process","termid":"GO:0051543"}


id: GO:0042254
data:
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id: PBO:0049723
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id: PBO:0072421
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id: GO:0044676
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id: GO:0046702
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id: GO:1904879
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id: PBO:0091150
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id: GO:0043592
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id: PBO:0069231
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  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 486, pseudogene","termid":"PBO:0069231"}


id: PBO:0078482
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id: PBO:0086408
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  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Putative glycoside hydrolase of the mitochondrial intermembrane space","termid":"PBO:0086408"}


id: PBO:0054217
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id: PBO:0072503
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id: FYPO:0003055
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id: GO:0140010
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id: PBO:0027488
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id: PBO:0038915
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id: GO:0009451
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id: PBO:0059142
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id: GO:0050955
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id: PBO:0016053
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id: PBO:0044998
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id: GO:0034306
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id: PBO:0077339
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id: GO:0005045
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id: PR:Q9Y7P4
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id: GO:1902328
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id: PBO:0056253
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id: PBO:0003926
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id: PR:O13966
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id: GO:0045314
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id: GO:0050454
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id: PBO:0039520
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id: PR:O74752
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id: PR:Q9USR7
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  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- rpl3801 gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q9USR7"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"60S ribosomal protein L38-1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC577.02","synonyms":[{"name":"Spom972h-rpl3801","type":"exact"}],"termid":"PR:Q9USR7"}


id: PBO:0045116
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id: GO:0048398
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id: PBO:0028472
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id: PATO:0001006
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id: PBO:0084065
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"GTPase-activating protein (RhoGAP) for Rho3p and Rho4p; involved in repolarization of actin cytoskeleton during adaptation to heat shock stress; phosphorylated by Pkc1p","termid":"PBO:0084065"}


id: PATO:0000384
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A biological sex quality inhering in an individual or a population whose sex organs contain only male gametes.","definition_xrefs":["MGED:MGED"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phenotypic sex","termid":"PATO:0001894"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"male","termid":"PATO:0000384"}


id: PBO:0053702
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 904","termid":"PBO:0053702"}


id: PBO:0109166
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SRR1 family protein, cenromeric isochromosome forming, Srr1","termid":"PBO:0109166"}


id: PBO:0090466
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DNA-binding transcription factor Ste11","termid":"PBO:0090466"}


id: FYPO:0003614
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype in which the cell does not contain a detectable meiotic spindle during the second meiotic nuclear division.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"meiotic spindle absent from cell during meiosis","termid":"FYPO:0006391"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000120"},{"rel_name":"output_of","termid":"FYPO:0000054"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0002399"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0000120","FYPO:0000054","FYPO:0000002","FYPO:0001985","FYPO:0002399"],"is_obsolete":false,"name":"meiotic spindle absent from cell during meiosis II","synonyms":[{"name":"absent meiotic spindle during meiosis II","type":"exact"},{"name":"meiosis II spindle absent","type":"exact"},{"name":"meiotic spindle absent from cell during second meiotic nuclear division","type":"exact"}],"termid":"FYPO:0003614"}


id: GO:1990186
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the size of lymphatic vessels.","definition_xrefs":["PMID:23897233"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of anatomical structure size","termid":"GO:0090066"},{"relation_name":"is_a","term_name":"lymphatic vascular process in circulatory system","termid":"GO:1990183"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of lymphatic vessel size","synonyms":[{"name":"regulation of collecting lymphatic vessel size","type":"narrow"}],"termid":"GO:1990186"}


id: MOD:00411
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"modification from Unimod Isotopic label. OBSOLETE because Unimod:18 is now merged with entry 258 remap to MOD:00581 'single 018 label'","definition_xrefs":["PubMed:18688235"],"gene_count":0,"genotype_count":0,"name":"OBSOLETE MOD:00411 O18 label (obsolete MOD:00411)","termid":"MOD:00411"}


id: PBO:0055005
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2420","termid":"PBO:0055005"}


id: PBO:0004508
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"translocon beta subunit Sbh1 (predicted)","termid":"PBO:0004508"}


id: GO:0004574
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the hydrolysis of (1->6)-alpha-D-glucosidic linkages in some oligosaccharides produced from starch and glycogen by alpha-amylase, and in isomaltose. Releases a free alpha-D-glucose.","definition_xrefs":["EC:3.2.1.10"],"direct_ancestors":[{"relation_name":"is_a","term_name":"alpha-glucosidase activity","termid":"GO:0090599"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016798"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016787"}],"interesting_parent_ids":["GO:0016798","GO:0016787","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"oligo-1,6-glucosidase activity","secondary_identifiers":["MetaCyc:3.2.1.10-RXN"],"synonyms":[{"name":"alpha-limit dextrinase activity","type":"related"},{"name":"alpha-methylglucosidase activity","type":"related"},{"name":"dextrin 6-glucanohydrolase activity","type":"related"},{"name":"dextrin 6alpha-glucanohydrolase activity","type":"related"},{"name":"exo-oligo-1,6-glucosidase activity","type":"related"},{"name":"isomaltase activity","type":"related"},{"name":"limit dextrinase","type":"related"},{"name":"oligosaccharide alpha-1,6-glucohydrolase activity","type":"related"},{"name":"oligosaccharide alpha-1,6-glucosidase activity","type":"related"},{"name":"sucrase-isomaltase activity","type":"related"}],"termid":"GO:0004574"}


id: PBO:0089563
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"rRNA processing protein Tsr2","termid":"PBO:0089563"}


id: PBO:0053014
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"late endosomal/lysosomal adaptor, MAPK and MTOR activator 3 pseudogene 1","termid":"PBO:0053014"}


id: GO:0032788
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving saturated monocarboxylic acids, any organic acid containing one carboxyl (COOH) group or anion (COO-) and fully saturated C-C bonds.","definition_xrefs":["GOC:mah","GOC:vk"],"direct_ancestors":[{"relation_name":"is_a","term_name":"carboxylic acid metabolic process","termid":"GO:0019752"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0008150","GO:0044281"],"is_obsolete":false,"name":"saturated monocarboxylic acid metabolic process","synonyms":[{"name":"saturated monocarboxylate metabolic process","type":"exact"},{"name":"saturated monocarboxylic acid metabolism","type":"exact"}],"termid":"GO:0032788"}


id: PBO:0026647
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_number_of_Rad52_foci_during_mitotic_S_phase","termid":"PBO:0026647"}


id: PBQ:0000001
data:
  {"annotation_feature_type":"gene","cv_name":"pb_quiescence","definition":"A specialized resting state that cells enter in response to cues from the cell's environment. Quiescence is characterized by the absence of cell growth and division, by a reprogramming of global gene expression, and by changes characteristic of the organism and specific cell type. Depending on external conditions, quiescence may persist until cell death or cells may resume cell growth and division. In some cell types or under certain conditions, cellular metabolism may proceed.","definition_xrefs":["PomBase:mah","PomBase:jb"],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cell quiescence","synonyms":[{"name":"G0 phase","type":"related"},{"name":"cell cycle quiescence","type":"related"},{"name":"cellular quiescence","type":"exact"},{"name":"quiescence","type":"broad"}],"termid":"PBQ:0000001"}


id: CHEBI:17326
data:
  {"annotation_feature_type":"gene","cv_name":"chebi_ontology","direct_ancestors":[{"relation_name":"is_a","term_name":"chemical entity","termid":"CHEBI:24431"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nucleoside triphosphate","termid":"CHEBI:17326"}


id: GO:0072690
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A phase of population growth during which single celled organisms reproduce by budding, fission, or other asexual methods.","definition_xrefs":["GOC:mah","GOV:vw"],"direct_ancestors":[{"relation_name":"is_a","term_name":"biological phase","termid":"GO:0044848"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"single-celled organism vegetative growth phase","secondary_identifiers":["GO:0062178"],"synonyms":[{"name":"stationary phase","type":"narrow"},{"name":"vegetative growth of a single-celled organism","type":"exact"}],"termid":"GO:0072690"}


id: GO:1905358
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of snRNA pseudouridine synthesis.","definition_xrefs":["PMID:27268497","GOC:TermGenie","GO_REF:0000058"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of RNA metabolic process","termid":"GO:0051254"},{"relation_name":"is_a","term_name":"regulation of snRNA pseudouridine synthesis","termid":"GO:1905356"},{"relation_name":"positively_regulates","term_name":"snRNA pseudouridine synthesis","termid":"GO:0031120"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"positively_regulates","termid":"GO:0016073"},{"rel_name":"regulates","termid":"GO:0016073"}],"interesting_parent_ids":["GO:0008150","GO:0016073"],"is_obsolete":false,"name":"positive regulation of snRNA pseudouridine synthesis","synonyms":[{"name":"activation of snRNA pseudouridine synthesis","type":"narrow"},{"name":"up regulation of snRNA pseudouridine synthesis","type":"exact"},{"name":"up-regulation of snRNA pseudouridine synthesis","type":"exact"},{"name":"upregulation of snRNA pseudouridine synthesis","type":"exact"}],"termid":"GO:1905358"}


id: PBO:0075189
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nuclear ribonucleoprotein polypeptide G pseudogene 1","termid":"PBO:0075189"}


id: GO:0050621
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: L-tryptophan + O2 = alpha,beta-didehydrotryptophan + H2O2 + H+.","definition_xrefs":["RHEA:19901","EC:1.3.3.10"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the CH-CH group of donors, oxygen as acceptor","termid":"GO:0016634"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016491"],"is_obsolete":false,"name":"tryptophan alpha,beta-oxidase activity","secondary_identifiers":["KEGG_REACTION:R05317","MetaCyc:1.4.3.17-RXN"],"synonyms":[{"name":"L-tryptophan 2',3'-oxidase activity","type":"related"},{"name":"L-tryptophan alpha,beta-dehydrogenase activity","type":"related"},{"name":"L-tryptophan:oxygen alpha,beta-oxidoreductase activity","type":"related"},{"name":"tryptophan a,b-oxidase activity","type":"exact"}],"termid":"GO:0050621"}


id: GO:0140612
data:
  {"annotated_genes":["SJAG_01410","SJAG_02748","SJAG_02187","SJAG_01807","SJAG_00757","SJAG_01620","SJAG_02708","SJAG_02267","SJAG_01419","SJAG_02226"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[96250,112443,87249,101876,84050,88195,92564,94757,96282,100346],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0140664"}]},"cv_name":"molecular_function","definition":"A molecule that recognises toxic DNA structures, for example, double-strand breaks or collapsed replication forks, and initiates a signaling response.","definition_xrefs":["PMID:31995034"],"direct_ancestors":[{"relation_name":"is_a","term_name":"small molecule sensor activity","termid":"GO:0140299"}],"gene_count":10,"genes_by_uniquename":{"SJAG_00757":null,"SJAG_01410":null,"SJAG_01419":null,"SJAG_01620":null,"SJAG_01807":null,"SJAG_02187":null,"SJAG_02226":null,"SJAG_02267":null,"SJAG_02708":null,"SJAG_02748":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0140299"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0140299"],"is_obsolete":false,"name":"DNA damage sensor activity","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"DNA damage sensing activity","type":"exact"}],"termid":"GO:0140612","terms_by_termid":{"GO:0140664":null}}


id: RO:0002473
data:
  {"annotation_feature_type":"gene","cv_name":"relationship","definition":"x composed_primarily_of y if and only if more than half of the mass of x is made from y or units of the same type as y.","direct_ancestors":[{"relation_name":"is_a","term_name":"has_part","termid":"BFO:0000051"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"composed_primarily_of","termid":"RO:0002473"}


