# terms

id: PBO:0090889
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RhoGAP Rga3","termid":"PBO:0090889"}


id: FYPO:0006121
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which membrane raft distribution, i.e. the process that establishes the spatial arrangement of membrane rafts within a cellular membrane, is abnormal.","definition_xrefs":["PomBase:mah","PMID:19808887","GO:0031580"],"direct_ancestors":[{"relation_name":"is_a","term_name":"localization phenotype during vegetative growth","termid":"FYPO:0001337"},{"relation_name":"is_a","term_name":"abnormal membrane organization during vegetative growth","termid":"FYPO:0001351"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001320","FYPO:0001985","FYPO:0005447","FYPO:0000138"],"is_obsolete":false,"name":"abnormal membrane raft distribution","synonyms":[{"name":"abnormal lipid raft distribution","type":"exact"},{"name":"abnormal membrane raft distribution during mitotic cell cycle","type":"related"},{"name":"abnormal membrane raft distribution during vegetative growth","type":"exact"}],"termid":"FYPO:0006121"}


id: GO:0110015
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of elastin catabolism, the chemical reactions and pathways resulting in the breakdown of elastin.","definition_xrefs":["GOC:rph","GOC:BHF_miRNA","GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of protein catabolic process","termid":"GO:0045732"},{"relation_name":"is_a","term_name":"regulation of elastin catabolic process","termid":"GO:0060310"},{"relation_name":"is_a","term_name":"positive regulation of glycoprotein metabolic process","termid":"GO:1903020"},{"relation_name":"positively_regulates","term_name":"elastin catabolic process","termid":"GO:0060309"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0030163"},{"rel_name":"positively_regulates","termid":"GO:0030163"}],"interesting_parent_ids":["GO:0030163","GO:0008150"],"is_obsolete":false,"name":"positive regulation of elastin catabolic process","termid":"GO:0110015"}


id: GO:1900395
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of kojic acid biosynthetic process.","definition_xrefs":["GOC:di","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of cellular biosynthetic process","termid":"GO:0031327"},{"relation_name":"is_a","term_name":"regulation of kojic acid biosynthetic process","termid":"GO:1900394"},{"relation_name":"is_a","term_name":"negative regulation of alcohol biosynthetic process","termid":"GO:1902931"},{"relation_name":"negatively_regulates","term_name":"kojic acid biosynthetic process","termid":"GO:2001317"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"negatively_regulates","termid":"GO:0044281"},{"rel_name":"regulates","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0044281","GO:0008150"],"is_obsolete":false,"name":"negative regulation of kojic acid biosynthetic process","synonyms":[{"name":"down regulation of 5-hydroxy-2-(hydroxymethyl)-4H-pyran-4-one anabolism","type":"exact"},{"name":"down regulation of 5-hydroxy-2-(hydroxymethyl)-4H-pyran-4-one biosynthesis","type":"exact"},{"name":"down regulation of 5-hydroxy-2-(hydroxymethyl)-4H-pyran-4-one biosynthetic process","type":"exact"},{"name":"down regulation of 5-hydroxy-2-(hydroxymethyl)-4H-pyran-4-one formation","type":"exact"},{"name":"down regulation of 5-hydroxy-2-(hydroxymethyl)-4H-pyran-4-one synthesis","type":"exact"},{"name":"down regulation of C6H6O4 anabolism","type":"related"},{"name":"down regulation of C6H6O4 biosynthesis","type":"related"},{"name":"down regulation of C6H6O4 biosynthetic process","type":"related"},{"name":"down regulation of C6H6O4 formation","type":"related"},{"name":"down regulation of C6H6O4 synthesis","type":"related"},{"name":"down regulation of kojic acid anabolism","type":"exact"},{"name":"down regulation of kojic acid biosynthesis","type":"exact"},{"name":"down regulation of kojic acid biosynthetic process","type":"exact"},{"name":"down regulation of kojic acid formation","type":"exact"},{"name":"down regulation of kojic acid synthesis","type":"exact"},{"name":"down-regulation of 5-hydroxy-2-(hydroxymethyl)-4H-pyran-4-one anabolism","type":"exact"},{"name":"down-regulation of 5-hydroxy-2-(hydroxymethyl)-4H-pyran-4-one biosynthesis","type":"exact"},{"name":"down-regulation of 5-hydroxy-2-(hydroxymethyl)-4H-pyran-4-one biosynthetic process","type":"exact"},{"name":"down-regulation of 5-hydroxy-2-(hydroxymethyl)-4H-pyran-4-one formation","type":"exact"},{"name":"down-regulation of 5-hydroxy-2-(hydroxymethyl)-4H-pyran-4-one synthesis","type":"exact"},{"name":"down-regulation of C6H6O4 anabolism","type":"related"},{"name":"down-regulation of C6H6O4 biosynthesis","type":"related"},{"name":"down-regulation of C6H6O4 biosynthetic process","type":"related"},{"name":"down-regulation of C6H6O4 formation","type":"related"},{"name":"down-regulation of C6H6O4 synthesis","type":"related"},{"name":"down-regulation of kojic acid anabolism","type":"exact"},{"name":"down-regulation of kojic acid biosynthesis","type":"exact"},{"name":"down-regulation of kojic acid biosynthetic process","type":"exact"},{"name":"down-regulation of kojic acid formation","type":"exact"},{"name":"down-regulation of kojic acid synthesis","type":"exact"},{"name":"downregulation of 5-hydroxy-2-(hydroxymethyl)-4H-pyran-4-one anabolism","type":"exact"},{"name":"downregulation of 5-hydroxy-2-(hydroxymethyl)-4H-pyran-4-one biosynthesis","type":"exact"},{"name":"downregulation of 5-hydroxy-2-(hydroxymethyl)-4H-pyran-4-one biosynthetic process","type":"exact"},{"name":"downregulation of 5-hydroxy-2-(hydroxymethyl)-4H-pyran-4-one formation","type":"exact"},{"name":"downregulation of 5-hydroxy-2-(hydroxymethyl)-4H-pyran-4-one synthesis","type":"exact"},{"name":"downregulation of C6H6O4 anabolism","type":"related"},{"name":"downregulation of C6H6O4 biosynthesis","type":"related"},{"name":"downregulation of C6H6O4 biosynthetic process","type":"related"},{"name":"downregulation of C6H6O4 formation","type":"related"},{"name":"downregulation of C6H6O4 synthesis","type":"related"},{"name":"downregulation of kojic acid anabolism","type":"exact"},{"name":"downregulation of kojic acid biosynthesis","type":"exact"},{"name":"downregulation of kojic acid biosynthetic process","type":"exact"},{"name":"downregulation of kojic acid formation","type":"exact"},{"name":"downregulation of kojic acid synthesis","type":"exact"},{"name":"inhibition of 5-hydroxy-2-(hydroxymethyl)-4H-pyran-4-one anabolism","type":"exact"},{"name":"inhibition of 5-hydroxy-2-(hydroxymethyl)-4H-pyran-4-one biosynthesis","type":"exact"},{"name":"inhibition of 5-hydroxy-2-(hydroxymethyl)-4H-pyran-4-one biosynthetic process","type":"exact"},{"name":"inhibition of 5-hydroxy-2-(hydroxymethyl)-4H-pyran-4-one formation","type":"exact"},{"name":"inhibition of 5-hydroxy-2-(hydroxymethyl)-4H-pyran-4-one synthesis","type":"exact"},{"name":"inhibition of C6H6O4 anabolism","type":"related"},{"name":"inhibition of C6H6O4 biosynthesis","type":"related"},{"name":"inhibition of C6H6O4 biosynthetic process","type":"related"},{"name":"inhibition of C6H6O4 formation","type":"related"},{"name":"inhibition of C6H6O4 synthesis","type":"related"},{"name":"inhibition of kojic acid anabolism","type":"exact"},{"name":"inhibition of kojic acid biosynthesis","type":"exact"},{"name":"inhibition of kojic acid biosynthetic process","type":"narrow"},{"name":"inhibition of kojic acid formation","type":"exact"},{"name":"inhibition of kojic acid synthesis","type":"exact"},{"name":"negative regulation of 5-hydroxy-2-(hydroxymethyl)-4H-pyran-4-one anabolism","type":"exact"},{"name":"negative regulation of 5-hydroxy-2-(hydroxymethyl)-4H-pyran-4-one biosynthesis","type":"exact"},{"name":"negative regulation of 5-hydroxy-2-(hydroxymethyl)-4H-pyran-4-one biosynthetic process","type":"exact"},{"name":"negative regulation of 5-hydroxy-2-(hydroxymethyl)-4H-pyran-4-one formation","type":"exact"},{"name":"negative regulation of 5-hydroxy-2-(hydroxymethyl)-4H-pyran-4-one synthesis","type":"exact"},{"name":"negative regulation of C6H6O4 anabolism","type":"related"},{"name":"negative regulation of C6H6O4 biosynthesis","type":"related"},{"name":"negative regulation of C6H6O4 biosynthetic process","type":"related"},{"name":"negative regulation of C6H6O4 formation","type":"related"},{"name":"negative regulation of C6H6O4 synthesis","type":"related"},{"name":"negative regulation of kojic acid anabolism","type":"exact"},{"name":"negative regulation of kojic acid biosynthesis","type":"exact"},{"name":"negative regulation of kojic acid formation","type":"exact"},{"name":"negative regulation of kojic acid synthesis","type":"exact"}],"termid":"GO:1900395"}


id: PBO:0067863
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 5S ribosomal pseudogene 165","termid":"PBO:0067863"}


id: PBO:0053684
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 871","termid":"PBO:0053684"}


id: FYPO:0004633
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which the observed rate of a protein kinase activity is decreased during the second meiotic nuclear division.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased protein kinase activity","termid":"FYPO:0001382"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000661"},{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0000654"},{"rel_name":"is_a","termid":"FYPO:0000707"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000661","FYPO:0000654","FYPO:0000707","FYPO:0000652"],"is_obsolete":false,"name":"decreased protein kinase activity during meiosis II","synonyms":[{"name":"decreased protein kinase activity during second meiotic nuclear division","type":"exact"},{"name":"reduced protein kinase activity during meiosis II","type":"exact"}],"termid":"FYPO:0004633"}


id: PR:O60084
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A mitochondrial import inner membrane translocase subunit TIM44 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx","OMA:SCHPO03175","PANTHER:PTHR10721:SF1"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial import inner membrane translocase subunit tim44 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC14C8.02","secondary_identifiers":["UniProtKB:O60084"],"synonyms":[{"name":"Spom972h-TIMM44","type":"exact"}],"termid":"PR:O60084"}


id: PBO:0048731
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glutamate dehydrogenase 1 pseudogene 2","termid":"PBO:0048731"}


id: FYPO:0000141
data:
  {"alleles_by_uniquename":{"SJAG_03449:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_03449","name":"man1delta","uniquename":"SJAG_03449:allele-1"},"SJAG_03449:allele-2":{"allele_type":"partial_amino_acid_deletion","description":"man1DHEH","gene_uniquename":"SJAG_03449","name":"Man1DHEH","uniquename":"SJAG_03449:allele-2"},"SJAG_03449:allele-3":{"allele_type":"amino_acid_insertion_and_deletion","description":"man1-1-488","gene_uniquename":"SJAG_03449","name":"man1-1-488","uniquename":"SJAG_03449:allele-3"}},"annotation_feature_type":"genotype","cv_annotations":{"single_locus_phenotype":[{"annotations":[115641,115640,115642],"is_not":false,"rel_names":["part_of","is_a"],"summary":null,"term":"FYPO:0000671"}]},"cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which mitotic sister chromatid segregation is abnormal. Mitotic sister chromatid segregation is the entire process in which replicated homologous chromosomes are organized and then physically separated and apportioned to two sets during the mitotic cell cycle.","definition_xrefs":["GO:0000070","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal chromosome segregation","termid":"FYPO:0000029"},{"relation_name":"is_a","term_name":"abnormal mitosis","termid":"FYPO:0000337"},{"relation_name":"is_a","term_name":"abnormal chromosome organization","termid":"FYPO:0000641"},{"relation_name":"part_of","term_name":"abnormal mitosis","termid":"FYPO:0000337"}],"gene_count":1,"genes_by_uniquename":{"SJAG_03449":null},"genotype_count":3,"genotypes_by_uniquename":{"Man1DHEH-man1DHEH-partial_amino_acid_deletion-expression-not_assayed_or_wild_type":{"display_name":"Man1DHEH(man1DHEH)","display_uniquename":"Man1DHEH-man1DHEH-partial_amino_acid_deletion-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03449:allele-2","expression":"Not assayed or wild type"}]}]},"man1-1-488-man1-1-488-amino_acid_insertion_and_deletion-expression-not_assayed_or_wild_type":{"display_name":"man1-1-488(aa)","display_uniquename":"man1-1-488-man1-1-488-amino_acid_insertion_and_deletion-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03449:allele-3","expression":"Not assayed or wild type"}]}]},"man1delta":{"display_name":"man1delta","display_uniquename":"man1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03449:allele-1","expression":"Null"}]}]}},"interesting_parent_details":[{"rel_name":"part_of","termid":"FYPO:0000337"},{"rel_name":"part_of","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000337"},{"rel_name":"is_a","termid":"FYPO:0000641"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"part_of","termid":"FYPO:0005447"},{"rel_name":"part_of","termid":"FYPO:0000631"},{"rel_name":"part_of","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000631"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0000337","FYPO:0001320","FYPO:0000641","FYPO:0001985","FYPO:0000631","FYPO:0005447"],"is_obsolete":false,"name":"abnormal mitotic sister chromatid segregation","references_by_uniquename":{"PMID:24184107":null},"secondary_identifiers":["FYPO:0001359"],"single_locus_annotated_genes":["SJAG_03449"],"single_locus_genotype_uniquenames":["man1-1-488-man1-1-488-amino_acid_insertion_and_deletion-expression-not_assayed_or_wild_type","Man1DHEH-man1DHEH-partial_amino_acid_deletion-expression-not_assayed_or_wild_type","man1delta"],"synonyms":[{"name":"abnormal chromosome segregation during vegetative growth","type":"exact"},{"name":"abnormal mitotic chromosome segregation","type":"exact"},{"name":"abnormal mitotic sister chromatid segregation during vegetative growth","type":"exact"},{"name":"abnormal sister chromatid segregation during mitotic cell cycle","type":"related"},{"name":"centromere function defective during vegetative growth","type":"related"},{"name":"chromosome segregation defects during vegetative growth","type":"exact"},{"name":"chromosome segregation defects, mitotic","type":"exact"},{"name":"mitotic chromosome missegregation","type":"related"},{"name":"mitotic sister chromatid missegregation","type":"related"}],"termid":"FYPO:0000141","terms_by_termid":{"FYPO:0000671":null}}


id: PBO:0038314
data:
  {"annotation_feature_type":"gene","cv_name":"pubprop_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"canto_initial_curator_email","termid":"PBO:0038314"}


id: GO:1905452
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any canonical Wnt signaling pathway that is involved in regulation of stem cell proliferation.","definition_xrefs":["PMID:25640183","GOC:PARL","GOC:TermGenie","GOC:bc","GO_REF:0000060"],"gene_count":0,"genotype_count":0,"name":"obsolete canonical Wnt signaling pathway involved in regulation of stem cell proliferation (obsolete GO:1905452)","synonyms":[{"name":"Wnt receptor signaling pathway through beta-catenin involved in regulation of stem cell proliferation","type":"exact"},{"name":"Wnt receptor signaling pathway via beta-catenin involved in regulation of stem cell proliferation","type":"exact"},{"name":"Wnt receptor signalling pathway through beta-catenin involved in regulation of stem cell proliferation","type":"exact"},{"name":"canonical Wnt receptor signaling pathway involved in regulation of stem cell proliferation","type":"exact"},{"name":"canonical Wnt-activated signaling pathway involved in regulation of stem cell proliferation","type":"exact"},{"name":"frizzled-1 receptor signaling pathway involved in regulation of stem cell proliferation","type":"narrow"}],"termid":"GO:1905452"}


id: GO:0060969
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that decreases the rate, frequency, or extent of gene silencing, the transcriptional or post-transcriptional process carried out at the cellular level that results in long-term gene inactivation.","definition_xrefs":["GOC:tb","GOC:dph"],"gene_count":0,"genotype_count":0,"name":"obsolete negative regulation of gene silencing (obsolete GO:0060969)","termid":"GO:0060969"}


id: PBO:0028697
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_degradation_of_middle_meiotic_gene_mRNA_during_late_meiosis","termid":"PBO:0028697"}


id: GO:0032297
data:
  {"annotated_genes":["SJAG_02162","SJAG_01210","SJAG_03048"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[98554,93969,105088],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1903467"}]},"cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of initiation of DNA-dependent DNA replication.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of DNA-templated DNA replication initiation","termid":"GO:0030174"},{"relation_name":"is_a","term_name":"negative regulation of DNA-templated DNA replication","termid":"GO:2000104"},{"relation_name":"negatively_regulates","term_name":"DNA replication initiation","termid":"GO:0006270"}],"gene_count":3,"genes_by_uniquename":{"SJAG_01210":null,"SJAG_02162":null,"SJAG_03048":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"negatively_regulates","termid":"GO:0006259"},{"rel_name":"regulates","termid":"GO:0006260"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0006259"},{"rel_name":"negatively_regulates","termid":"GO:0006260"}],"interesting_parent_ids":["GO:0006259","GO:0008150","GO:0006260"],"is_obsolete":false,"name":"negative regulation of DNA-templated DNA replication initiation","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"down regulation of DNA replication initiation","type":"exact"},{"name":"down-regulation of DNA replication initiation","type":"exact"},{"name":"downregulation of DNA replication initiation","type":"exact"},{"name":"inhibition of DNA replication initiation","type":"narrow"},{"name":"negative regulation of DNA replication initiation","type":"broad"},{"name":"negative regulation of DNA-dependent DNA replication initiation","type":"exact"}],"termid":"GO:0032297","terms_by_termid":{"GO:1903467":null}}


id: PBO:0080675
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"WHAMM pseudogene 2","termid":"PBO:0080675"}


id: PBO:0039281
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ALG1 like 10, pseudogene","termid":"PBO:0039281"}


id: GO:0009154
data:
  {"annotated_genes":["SJAG_03373","SJAG_02107","SJAG_03852","SJAG_04192","SJAG_03903","SJAG_02369","SJAG_02009","SJAG_00633","SJAG_06622","SJAG_02135","SJAG_03660","SJAG_04334","SJAG_06621","SJAG_04495","SJAG_00027","SJAG_02481","SJAG_02796","SJAG_00605","SJAG_02247","SJAG_04048","SJAG_00685","SJAG_05314","SJAG_00839","SJAG_03828","SJAG_01310","SJAG_02945","SJAG_00461","SJAG_04870"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[84952],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1901911"},{"annotations":[112564],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006198"},{"annotations":[105128,105124,90722,105125,101636,105590,105594,105596,105127,101635,102000,99832,105122,105593,99573,105123,105592,94193,105591,112534,105595,102001,105126,91212,94465,101634,100644],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0061621"},{"annotations":[96018],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0015938"},{"annotations":[100647],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006096"},{"annotations":[84854],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0061613"},{"annotations":[94382,107769],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0061688"},{"annotations":[72057,75101],"is_not":false,"rel_names":["regulates","negatively_regulates"],"summary":null,"term":"GO:0045820"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of a purine ribonucleotide, a compound consisting of ribonucleoside (a purine base linked to a ribose sugar) esterified with a phosphate group at either the 3' or 5'-hydroxyl group of the sugar.","definition_xrefs":["GOC:go_curators","ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"purine nucleotide catabolic process","termid":"GO:0006195"},{"relation_name":"is_a","term_name":"purine ribonucleotide metabolic process","termid":"GO:0009150"},{"relation_name":"is_a","term_name":"ribonucleotide catabolic process","termid":"GO:0009261"}],"gene_count":28,"genes_by_uniquename":{"SJAG_00027":null,"SJAG_00461":null,"SJAG_00605":null,"SJAG_00633":null,"SJAG_00685":null,"SJAG_00839":null,"SJAG_01310":null,"SJAG_02009":null,"SJAG_02107":null,"SJAG_02135":null,"SJAG_02247":null,"SJAG_02369":null,"SJAG_02481":null,"SJAG_02796":null,"SJAG_02945":null,"SJAG_03373":null,"SJAG_03660":null,"SJAG_03828":null,"SJAG_03852":null,"SJAG_03903":null,"SJAG_04048":null,"SJAG_04192":null,"SJAG_04334":null,"SJAG_04495":null,"SJAG_04870":null,"SJAG_05314":null,"SJAG_06621":null,"SJAG_06622":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0044248"},{"rel_name":"is_a","termid":"GO:0055086"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0044281","GO:0008150","GO:0044248","GO:0055086"],"is_obsolete":false,"name":"purine ribonucleotide catabolic process","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"synonyms":[{"name":"purine ribonucleotide breakdown","type":"exact"},{"name":"purine ribonucleotide catabolism","type":"exact"},{"name":"purine ribonucleotide degradation","type":"exact"}],"termid":"GO:0009154","terms_by_termid":{"GO:0006096":null,"GO:0006198":null,"GO:0015938":null,"GO:0045820":null,"GO:0061613":null,"GO:0061621":null,"GO:0061688":null,"GO:1901911":null}}


id: GO:0039575
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process in which a virus stops, prevents, or reduces the frequency, rate or extent of host TYK2 (tyrosine kinase 2) activity by stopping, preventing or reducing phosphorylation and thereby activation of TYK2.","definition_xrefs":["PMID:16987978","PMID:10523853","PMID:19254804"],"gene_count":0,"genotype_count":0,"name":"obsolete suppression by virus of host TYK2 activity by negative regulation of TYK2 tyrosine phosphorylation (obsolete GO:0039575)","synonyms":[{"name":"inhibition by virus of host TYK2 activation","type":"broad"},{"name":"inhibition by virus of host TYK2 phosphorylation","type":"exact"}],"termid":"GO:0039575"}


id: GO:0039684
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A rolling circle viral DNA replication that begins with a single-stranded viral DNA genome.","definition_xrefs":["VZ:1941","GOC:bf","GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"rolling circle viral DNA replication","termid":"GO:0039682"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006259"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006259","GO:0008150"],"is_obsolete":false,"name":"rolling circle single-stranded viral DNA replication","synonyms":[{"name":"ssDNA rolling circle replication","type":"exact"}],"termid":"GO:0039684"}


id: SO:0000034
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"Morpholino oligos are synthesized from four different Morpholino subunits, each of which contains one of the four genetic bases (A, C, G, T) linked to a 6-membered morpholine ring. Eighteen to 25 subunits of these four subunit types are joined in a specific order by non-ionic phosphorodiamidate intersubunit linkages to give a Morpholino.","direct_ancestors":[{"relation_name":"has_quality","term_name":"morpholino_backbone","termid":"SO:0001183"},{"relation_name":"is_a","term_name":"synthetic_oligo","termid":"SO:0001247"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"morpholino_oligo","synonyms":[{"name":"morphant","type":"broad"},{"name":"morpholino","type":"exact"},{"name":"morpholino oligo","type":"exact"}],"termid":"SO:0000034"}


id: PBO:0067129
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 176, pseudogene","termid":"PBO:0067129"}


id: PBO:0085263
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Permease of basic amino acids in the vacuolar membrane","termid":"PBO:0085263"}


id: PBO:0077678
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TNF superfamily member 9","termid":"PBO:0077678"}


id: GO:0018272
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The modification of peptidyl-lysine to form N6-pyridoxal phosphate-L-lysine.","definition_xrefs":["RESID:AA0119"],"direct_ancestors":[{"relation_name":"is_a","term_name":"peptidyl-lysine modification","termid":"GO:0018205"},{"relation_name":"is_a","term_name":"protein-pyridoxal-5-phosphate linkage","termid":"GO:0018352"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"protein-pyridoxal-5-phosphate linkage via peptidyl-N6-pyridoxal phosphate-L-lysine","termid":"GO:0018272"}


id: GO:0071591
data:
  {"annotated_genes":["SJAG_03096"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[104697],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0071592"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways involving nicotinic acid riboside, the product of the formation of a glycosidic bond between ribose and nicotinic acid.","definition_xrefs":["GOC:mah","PMID:19846558"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pyridine nucleoside metabolic process","termid":"GO:0070637"}],"gene_count":1,"genes_by_uniquename":{"SJAG_03096":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0055086"}],"interesting_parent_ids":["GO:0055086","GO:0044281","GO:0008150"],"is_obsolete":false,"name":"nicotinic acid riboside metabolic process","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"D-ribosylnicotinic acid metabolic process","type":"exact"},{"name":"nicotinic acid riboside metabolism","type":"exact"}],"termid":"GO:0071591","terms_by_termid":{"GO:0071592":null}}


id: PBO:0054763
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2175","termid":"PBO:0054763"}


id: PBO:0017572
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SUMO activating enzyme E1-type Rad31","termid":"PBO:0017572"}


id: PATO:0001099
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0001099 relative force (obsolete PATO:0001099)","termid":"PATO:0001099"}


id: PBO:0003015
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NAD-dependent malic enzyme (predicted), partial","termid":"PBO:0003015"}


id: MOD:00087
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-lysine residue to N6-myristoyl-L-lysine.","definition_xrefs":["OMSSA:81","Unimod:45#K","RESID:AA0078","PubMed:1402651","PubMed:8346241"],"direct_ancestors":[{"relation_name":"is_a","term_name":"N-myristoylated residue","termid":"MOD:00650"},{"relation_name":"is_a","term_name":"N6-acylated L-lysine","termid":"MOD:01875"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:00649"}],"interesting_parent_ids":["MOD:00649"],"is_obsolete":false,"name":"N6-myristoyl-L-lysine","synonyms":[{"name":"(2S)-2-amino-6-(tetradecanoylamino)hexanoic acid","type":"exact"},{"name":"2-amino-6-(tetradecanamido)hexanoic acid","type":"exact"},{"name":"LIPID N6-myristoyl lysine","type":"exact"},{"name":"Myristoyl","type":"related"},{"name":"Myristoylation","type":"related"},{"name":"N(zeta)-myristoyllysine","type":"exact"},{"name":"N6-(1-oxotetradecyl)-L-lysine","type":"exact"},{"name":"N6-(C14:0 aliphatic acyl)lysine","type":"exact"},{"name":"N6-myristoyl-L-lysine","type":"exact"},{"name":"N6-myristoylated L-lysine","type":"exact"},{"name":"N6MyrLys","type":"exact"},{"name":"epsilon-myristoyllysine","type":"exact"},{"name":"myristoylationk","type":"exact"}],"termid":"MOD:00087"}


id: GO:1904472
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of endothelin production.","definition_xrefs":["GOC:TermGenie","PMID:15560120","GO_REF:0000058"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of cytokine production","termid":"GO:0001819"},{"relation_name":"is_a","term_name":"regulation of endothelin production","termid":"GO:1904470"},{"relation_name":"positively_regulates","term_name":"endothelin production","termid":"GO:1990775"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"positively_regulates","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0010467","GO:0008150"],"is_obsolete":false,"name":"positive regulation of endothelin production","synonyms":[{"name":"activation of EDN1 secretion","type":"narrow"},{"name":"activation of EDN2 secretion","type":"narrow"},{"name":"activation of EDN3 secretion","type":"narrow"},{"name":"activation of endothelin secretion","type":"narrow"},{"name":"activation of endothelin-1 secretion","type":"narrow"},{"name":"activation of endothelin-2 secretion","type":"narrow"},{"name":"activation of endothelin-3 secretion","type":"narrow"},{"name":"positive regulation of EDN1 secretion","type":"narrow"},{"name":"positive regulation of EDN2 secretion","type":"narrow"},{"name":"positive regulation of EDN3 secretion","type":"narrow"},{"name":"positive regulation of endothelin secretion","type":"narrow"},{"name":"positive regulation of endothelin-1 secretion","type":"narrow"},{"name":"positive regulation of endothelin-2 secretion","type":"narrow"},{"name":"positive regulation of endothelin-3 secretion","type":"narrow"},{"name":"up regulation of EDN1 secretion","type":"narrow"},{"name":"up regulation of EDN2 secretion","type":"narrow"},{"name":"up regulation of EDN3 secretion","type":"narrow"},{"name":"up regulation of endothelin secretion","type":"exact"},{"name":"up regulation of endothelin-1 secretion","type":"narrow"},{"name":"up regulation of endothelin-2 secretion","type":"narrow"},{"name":"up regulation of endothelin-3 secretion","type":"narrow"},{"name":"up-regulation of EDN1 secretion","type":"narrow"},{"name":"up-regulation of EDN2 secretion","type":"narrow"},{"name":"up-regulation of EDN3 secretion","type":"narrow"},{"name":"up-regulation of endothelin secretion","type":"exact"},{"name":"up-regulation of endothelin-1 secretion","type":"narrow"},{"name":"up-regulation of endothelin-2 secretion","type":"narrow"},{"name":"up-regulation of endothelin-3 secretion","type":"narrow"},{"name":"upregulation of EDN1 secretion","type":"narrow"},{"name":"upregulation of EDN2 secretion","type":"narrow"},{"name":"upregulation of EDN3 secretion","type":"narrow"},{"name":"upregulation of endothelin secretion","type":"exact"},{"name":"upregulation of endothelin-1 secretion","type":"narrow"},{"name":"upregulation of endothelin-2 secretion","type":"narrow"},{"name":"upregulation of endothelin-3 secretion","type":"narrow"}],"termid":"GO:1904472"}


id: PBO:0029206
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_growth_on_hygromycin_B","termid":"PBO:0029206"}


id: PBO:0042109
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"coiled-coil domain containing 182","termid":"PBO:0042109"}


id: PBO:0085234
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Penta-EF-hand protein; required for polar bud growth and cell wall abscission; binds calcium and zinc with different affinity; localizes to bud site in G1, bud neck in G2; binds to Sec31p and modulates COPII coat assembly","termid":"PBO:0085234"}


id: PBO:0003366
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SGT1-like protein Git7","termid":"PBO:0003366"}


id: PBO:0091080
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ER membrane organization protein, HVA22/TB2/DP1 family protein","termid":"PBO:0091080"}


id: PBO:0063749
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PHB1 pseudogene 14","termid":"PBO:0063749"}


id: PBO:0063853
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"phosphatidylinositol binding clathrin assembly protein","termid":"PBO:0063853"}


id: PBO:0089803
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"FAD/NAD(P)-binding domain superfamily","termid":"PBO:0089803"}


id: PBO:0030363
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_protein_level_during_cellular_response_to_hypoxia","termid":"PBO:0030363"}


id: PBO:0080905
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein epsilon pseudogene 5","termid":"PBO:0080905"}


id: GO:0018417
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The incorporation of iron into a 3Fe-2S cluster by tris-L-cysteinyl L-cysteine persulfido L-glutamato L-histidino L-serinyl nickel triiron disulfide trioxide.","definition_xrefs":["RESID:AA0293"],"direct_ancestors":[{"relation_name":"is_a","term_name":"peptidyl-cysteine modification","termid":"GO:0018198"},{"relation_name":"is_a","term_name":"peptidyl-glutamic acid modification","termid":"GO:0018200"},{"relation_name":"is_a","term_name":"peptidyl-histidine modification","termid":"GO:0018202"},{"relation_name":"is_a","term_name":"peptidyl-serine modification","termid":"GO:0018209"},{"relation_name":"is_a","term_name":"iron incorporation into metallo-sulfur cluster","termid":"GO:0018283"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016226"},{"rel_name":"part_of","termid":"GO:0044085"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0016226","GO:0044085"],"is_obsolete":false,"name":"iron incorporation into iron-sulfur cluster via tris-L-cysteinyl L-cysteine persulfido L-glutamato L-histidino L-serinyl nickel triiron disulfide trioxide","synonyms":[{"name":"iron incorporation into iron-sulphur cluster via tris-L-cysteinyl L-cysteine persulphido L-glutamato L-histidino L-serinyl nickel triiron disulphide trioxide","type":"exact"}],"termid":"GO:0018417"}


id: MOD:00537
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-threonine residue to L-alanine.","definition_xrefs":["Unimod:659"],"direct_ancestors":[{"relation_name":"is_a","term_name":"L-alanine residue","termid":"MOD:00010"},{"relation_name":"is_a","term_name":"modified L-threonine residue","termid":"MOD:00917"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"L-alanine residue (Thr)","synonyms":[{"name":"Thr(Ala)","type":"exact"},{"name":"Thr->Ala","type":"related"},{"name":"Thr->Ala substitution","type":"related"}],"termid":"MOD:00537"}


id: GO:0003428
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The orderly movement of a chondrocyte from one site to another that contributes to the shaping of growth plate cartilage in an endochondral bone.","definition_xrefs":["GOC:tb","GOC:ascb_2009","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell migration","termid":"GO:0016477"},{"relation_name":"part_of","term_name":"growth plate cartilage morphogenesis","termid":"GO:0003422"},{"relation_name":"part_of","term_name":"convergent extension involved in organogenesis","termid":"GO:0060029"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"chondrocyte intercalation involved in growth plate cartilage morphogenesis","termid":"GO:0003428"}


id: PBO:0068574
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U2 small nuclear 25, pseudogene","termid":"PBO:0068574"}


id: PBO:0079298
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TTN antisense RNA 1","termid":"PBO:0079298"}


id: PBO:0088125
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Vacuolar membrane cation-chloride cotransporter (CCC); likely mediates K+ and Cl- cotransport into the vacuole; has a role in potassium homeostasis and salt tolerance; localizes to sites of contact between the vacuole and mitochondria (vCLAMPs); similar to mammalian electroneutral Na(+)-(K+)-C1- cotransporter family","termid":"PBO:0088125"}


id: PBO:0029854
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_histone_H3-K9_and_H3-K14_acetylation_at_centromere_outer_repeat","termid":"PBO:0029854"}


id: GO:0140298
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Uptake of iron into a cell via binding to an extracellular receptor, which is internalized by endocytosis.","definition_xrefs":["PMID:23092063"],"direct_ancestors":[{"relation_name":"is_a","term_name":"receptor-mediated endocytosis","termid":"GO:0006898"},{"relation_name":"is_a","term_name":"iron import into cell","termid":"GO:0033212"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016192"},{"rel_name":"is_a","termid":"GO:0098771"},{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0016192","GO:0006810","GO:0051179","GO:0008150","GO:0098771"],"is_obsolete":false,"name":"endocytic iron import into cell","synonyms":[{"name":"iron import into cell by endocytosis","type":"exact"}],"termid":"GO:0140298"}


id: PR:O13756
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A vacuolar protein sorting-associated protein 8 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx","OMA:SCHPO01486"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"vacuolar protein sorting-associated protein 8 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC17A2.06c","secondary_identifiers":["UniProtKB:O13756"],"synonyms":[{"name":"Spom972h-VPS8","type":"exact"},{"name":"vacuolar protein-targeting protein 8 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:O13756"}


id: PBO:0080707
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Wnt family member 9A","termid":"PBO:0080707"}


id: PBO:0052073
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"katanin catalytic subunit A1 like 2","termid":"PBO:0052073"}


id: GO:0030601
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the release of N-terminal Arg and Lys from oligopeptides when P1' is not Pro. Also acts on arylamides of Arg and Lys.","definition_xrefs":["EC:3.4.11.6"],"gene_count":0,"genotype_count":0,"name":"obsolete aminopeptidase B activity (obsolete GO:0030601)","synonyms":[{"name":"Cl--activated arginine aminopeptidase activity","type":"related"},{"name":"L-arginine aminopeptidase activity","type":"related"},{"name":"aminopeptidase B activity","type":"exact"},{"name":"arginyl aminopeptidase activity","type":"exact"},{"name":"arylamidase II","type":"related"},{"name":"cytosol aminopeptidase IV","type":"related"}],"termid":"GO:0030601"}


id: GO:0033147
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of the activity of an intracellular estrogen receptor signaling pathway.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of intracellular steroid hormone receptor signaling pathway","termid":"GO:0033144"},{"relation_name":"is_a","term_name":"regulation of intracellular estrogen receptor signaling pathway","termid":"GO:0033146"},{"relation_name":"negatively_regulates","term_name":"intracellular estrogen receptor signaling pathway","termid":"GO:0030520"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"negatively_regulates","termid":"GO:0023052"},{"rel_name":"regulates","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"negative regulation of intracellular estrogen receptor signaling pathway","synonyms":[{"name":"negative regulation of estrogen receptor signaling pathway","type":"broad"},{"name":"negative regulation of estrogen receptor signalling pathway","type":"exact"}],"termid":"GO:0033147"}


id: GO:0097513
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A bipolar filament composed of myosin II molecules.","definition_xrefs":["GOC:mah","GOC:cjm"],"direct_ancestors":[{"relation_name":"is_a","term_name":"myosin filament","termid":"GO:0032982"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"myosin II filament","termid":"GO:0097513"}


id: PBO:0048992
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"GPC3 antisense RNA 1","termid":"PBO:0048992"}


id: GO:0035455
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an interferon-alpha stimulus. Interferon-alpha is a type I interferon.","definition_xrefs":["GOC:sl","PMID:11356686"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to cytokine","termid":"GO:0034097"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"response to interferon-alpha","synonyms":[{"name":"response to interferon alfa-n1","type":"related"},{"name":"response to interferon alfa-n3","type":"related"},{"name":"response to leukocyte interferon","type":"exact"},{"name":"response to lymphoblast interferon","type":"exact"},{"name":"response to lymphoblastoid interferon","type":"exact"}],"termid":"GO:0035455"}


id: PBO:0069847
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 1133, pseudogene","termid":"PBO:0069847"}


id: PR:Q10074
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- avt3 gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q10074"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"vacuolar amino acid transporter 3 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC3H1.09c","synonyms":[{"name":"Spom972h-avt3","type":"exact"}],"termid":"PR:Q10074"}


id: GO:0050272
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 3-chloro-L-alanine + thioglycolate = S-carboxymethyl-L-cysteine + chloride + H+.","definition_xrefs":["RHEA:22868","EC:4.5.1.5"],"direct_ancestors":[{"relation_name":"is_a","term_name":"carbon-halide lyase activity","termid":"GO:0016848"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016829"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003824","GO:0016829","GO:0003674"],"is_obsolete":false,"name":"S-carboxymethylcysteine synthase activity","secondary_identifiers":["MetaCyc:S-CARBOXYMETHYLCYSTEINE-SYNTHASE-RXN","KEGG_REACTION:R04003"],"synonyms":[{"name":"3-chloro-L-alanine chloride-lyase (adding thioglycolate)","type":"related"},{"name":"3-chloro-L-alanine chloride-lyase (adding thioglycolate; S-carboxymethyl-L-cysteine-forming)","type":"related"},{"name":"S-carboxymethyl-L-cysteine synthase activity","type":"related"}],"termid":"GO:0050272"}


id: PBO:0055274
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2701","termid":"PBO:0055274"}


id: PBO:0091893
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"plasma membrane high-affinity glucose/fructose:proton symporter Ght5","termid":"PBO:0091893"}


id: PBO:0090542
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"phosphatidylinositol-4 kinase plasma membrane scaffold Efr3-like","termid":"PBO:0090542"}


id: PBO:0071031
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L21 pseudogene 33","termid":"PBO:0071031"}


id: PBO:0068128
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 5S ribosomal pseudogene 435","termid":"PBO:0068128"}


id: GO:0032983
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"An assembly of four or five subunits which form a structure with an extracellular N-terminus and a large loop that together form the ligand binding domain. The C-terminus is intracellular. The ionotropic glutamate receptor complex itself acts as a ligand gated ion channel; on binding glutamate, charged ions pass through a channel in the center of the receptor complex. Kainate receptors are multimeric assemblies of GluK1-3 (also called GluR5-7), GluK4 (KA1) and GluK5 (KA2) subunits.","definition_xrefs":["GOC:bf","PMID:18655795"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ionotropic glutamate receptor complex","termid":"GO:0008328"},{"relation_name":"is_a","term_name":"potassium channel complex","termid":"GO:0034705"},{"relation_name":"is_a","term_name":"sodium channel complex","termid":"GO:0034706"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005886"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0005886","GO:0005575","GO:0032991"],"is_obsolete":false,"name":"kainate selective glutamate receptor complex","termid":"GO:0032983"}


id: GO:0048843
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of axon extension involved in axon guidance.","definition_xrefs":["GOC:devbiol"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of axon extension","termid":"GO:0030517"},{"relation_name":"is_a","term_name":"regulation of axon extension involved in axon guidance","termid":"GO:0048841"},{"relation_name":"is_a","term_name":"negative regulation of chemotaxis","termid":"GO:0050922"},{"relation_name":"negatively_regulates","term_name":"axon extension involved in axon guidance","termid":"GO:0048846"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of axon extension involved in axon guidance","synonyms":[{"name":"down regulation of axon extension involved in axon guidance","type":"exact"},{"name":"down-regulation of axon extension involved in axon guidance","type":"exact"},{"name":"downregulation of axon extension involved in axon guidance","type":"exact"},{"name":"inhibition of axon extension involved in axon guidance","type":"narrow"}],"termid":"GO:0048843"}


id: GO:1901090
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of protein tetramerization.","definition_xrefs":["GOC:pm","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of protein oligomerization","termid":"GO:0032459"},{"relation_name":"regulates","term_name":"protein tetramerization","termid":"GO:0051262"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0065003"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0044085"}],"interesting_parent_ids":["GO:0044085","GO:0065003","GO:0008150"],"is_obsolete":false,"name":"regulation of protein tetramerization","synonyms":[{"name":"regulation of protein tetramer assembly","type":"exact"},{"name":"regulation of protein tetramer biosynthesis","type":"exact"},{"name":"regulation of protein tetramer biosynthetic process","type":"exact"},{"name":"regulation of protein tetramer formation","type":"exact"}],"termid":"GO:1901090"}


id: GO:0032836
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of the glomerular basement membrane over time, from its formation to the mature structure. The glomerular basement membrane is the basal laminal portion of the glomerulus which performs the actual filtration.","definition_xrefs":["GOC:sr"],"direct_ancestors":[{"relation_name":"is_a","term_name":"extracellular matrix organization","termid":"GO:0030198"},{"relation_name":"is_a","term_name":"anatomical structure development","termid":"GO:0048856"},{"relation_name":"part_of","term_name":"glomerulus development","termid":"GO:0032835"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"glomerular basement membrane development","termid":"GO:0032836"}


id: PBO:0048072
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ferritin heavy chain 1 pseudogene 23","termid":"PBO:0048072"}


id: GO:1905193
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of chloroplast fission.","definition_xrefs":["GOC:TermGenie","PMID:26862170","GO_REF:0000058"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of organelle organization","termid":"GO:0010639"},{"relation_name":"is_a","term_name":"regulation of chloroplast fission","termid":"GO:1905192"},{"relation_name":"negatively_regulates","term_name":"chloroplast fission","termid":"GO:0010020"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of chloroplast fission","synonyms":[{"name":"down regulation of chloroplast division","type":"exact"},{"name":"down regulation of chloroplast fission","type":"exact"},{"name":"down-regulation of chloroplast division","type":"exact"},{"name":"down-regulation of chloroplast fission","type":"exact"},{"name":"downregulation of chloroplast division","type":"exact"},{"name":"downregulation of chloroplast fission","type":"exact"},{"name":"inhibition of chloroplast division","type":"narrow"},{"name":"inhibition of chloroplast fission","type":"narrow"},{"name":"negative regulation of chloroplast division","type":"exact"}],"termid":"GO:1905193"}


id: GO:0002147
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The directed movement of a glucocorticoid receptor into the nucleus.","definition_xrefs":["GOC:hjd"],"gene_count":0,"genotype_count":0,"name":"obsolete glucocorticoid receptor import into nucleus (obsolete GO:0002147)","synonyms":[{"name":"glucocorticoid receptor nuclear translocation","type":"narrow"}],"termid":"GO:0002147"}


id: PBO:0062044
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 2 subfamily T member 29","termid":"PBO:0062044"}


id: GO:0060894
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which a cell becomes capable of differentiating autonomously into a limb spinous cell in an environment that is neutral with respect to the developmental pathway; upon specification, the cell fate can be reversed.","definition_xrefs":["GOC:tb","GOC:dph","GOC:sdb_2009"],"direct_ancestors":[{"relation_name":"is_a","term_name":"epidermal cell fate specification","termid":"GO:0009957"},{"relation_name":"is_a","term_name":"cell fate specification involved in pattern specification","termid":"GO:0060573"},{"relation_name":"part_of","term_name":"limb epidermis stratification","termid":"GO:0060888"},{"relation_name":"part_of","term_name":"limb spinous cell differentiation","termid":"GO:0060890"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"limb spinous cell fate specification","termid":"GO:0060894"}


id: PBO:0083153
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Dubious open reading frame; unlikely to encode a functional protein, based on available experimental and comparative sequence data; almost completely overlaps ORF SSM4/YIL030C","termid":"PBO:0083153"}


id: FYPO:0001774
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to the eisosome filament is abnormal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal protein localization to cell cortex during vegetative growth","termid":"FYPO:0000928"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000138"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0001320","FYPO:0001985","FYPO:0000002","FYPO:0000138"],"is_obsolete":false,"name":"abnormal protein localization to eisosome filament","synonyms":[{"name":"abnormal protein localisation to eisosome filament","type":"exact"},{"name":"abnormal protein localization to eisosome filament during mitotic cell cycle","type":"related"},{"name":"abnormal protein localization to eisosome filament during vegetative growth","type":"exact"},{"name":"abnormal protein localization to linear eisosome","type":"exact"}],"termid":"FYPO:0001774"}


id: PBO:0064633
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PPARG coactivator 1 beta","termid":"PBO:0064633"}


id: PBO:0034486
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_level_of_lipid_metabolism_gene_mRNA_during_cellular_response_to_hypoxia","termid":"PBO:0034486"}


id: PBO:0017685
data:
  {"annotation_feature_type":"gene","cv_name":"complementation","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"functionally complemented by rat ERK2","termid":"PBO:0017685"}


id: GO:0110134
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A biological process that results in the unequal transmission of alleles, haplotypes, or chromosomes from a parental genome to gametes. In the absence of meiotic drive, the two copies of each gene or chromosome in a diploid organism are transmitted to offspring with equal probability, whereas meiotic drive results in overrepresentation of the driving allele among the surviving products of meiosis.","definition_xrefs":["PMID:26920473","PMID:29322557","PMID:29499907","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"reproductive process","termid":"GO:0022414"}],"gene_count":0,"genotype_count":0,"in_subsets":["bp_goslim_japonicus"],"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"meiotic drive","termid":"GO:0110134"}


id: PBO:0062220
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 5 subfamily AP member 1 pseudogene","termid":"PBO:0062220"}


id: GO:0006978
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A cascade of processes induced by the cell cycle regulator phosphoprotein p53, or an equivalent protein, resulting in the induction of the transcription of p21 (also known as WAF1, CIP1 and SDI1) or any equivalent protein, in response to the detection of DNA damage.","definition_xrefs":["PMID:10967424"],"direct_ancestors":[{"relation_name":"is_a","term_name":"DNA damage response, signal transduction by p53 class mediator","termid":"GO:0030330"},{"relation_name":"is_a","term_name":"DNA damage response, signal transduction resulting in transcription","termid":"GO:0042772"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator","termid":"GO:0006978"}


id: PBO:0046190
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ELMO domain containing 1","termid":"PBO:0046190"}


id: PR:Q9URY1
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- ppk16 gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q9URY1"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"serine/threonine-protein kinase ppk16 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC890.03","synonyms":[{"name":"Spom972h-ppk16","type":"exact"},{"name":"meiotically up-regulated gene 92 protein (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:Q9URY1"}


id: PBO:0090537
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"alanine aminotransferase Alt1","termid":"PBO:0090537"}


id: FYPO:0007658
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell morphology phenotype in which a cell forms a mating projection with a flatter (less rounded) tip than normal.","definition_xrefs":["PomBase:mah","PMID:9606213"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal shmoo morphology","termid":"FYPO:0000357"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"output_of","termid":"FYPO:0000301"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000002","FYPO:0000301","FYPO:0005447"],"is_obsolete":false,"name":"shmoo with flat tip","synonyms":[{"name":"conjugation tube with flat tip","type":"exact"},{"name":"mating projection with flat tip","type":"exact"},{"name":"shmoo with flattened tip","type":"exact"}],"termid":"FYPO:0007658"}


id: SO:0000354
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A region of intronic nucleotide sequence targeted by a nuclease enzyme.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nuclease_sensitive_site","termid":"SO:0000684"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"group_1_intron_homing_endonuclease_target_region","synonyms":[{"name":"group 1 intron homing endonuclease target region","type":"exact"}],"termid":"SO:0000354"}


id: PBO:0048957
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glycoprotein Ib platelet subunit alpha","termid":"PBO:0048957"}


id: PR:Q10448
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPAC12B10.15c gene.","definition_xrefs":["UniProtKB:Q10448","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized protein C12B10.15c (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC12B10.15c","synonyms":[{"name":"Spom972h-SPAC12B10.15c","type":"exact"}],"termid":"PR:Q10448"}


id: PBO:0030846
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abolished_protein_localization_to_cell_tip,_with_protein_distributed_in_plasma_membrane_or_cortex","termid":"PBO:0030846"}


id: PBO:0006167
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-has_part","termid":"PBO:0006167"}


id: GO:0060213
data:
  {"annotated_genes":["SJAG_00686","SJAG_04682","SJAG_01436"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[85926,97186,101092],"is_not":false,"summary":null,"term":"GO:0060213"}]},"cv_name":"biological_process","definition":"Any process that increases the frequency, rate or extent of poly(A) tail shortening of a nuclear-transcribed mRNA. Poly(A) tail shortening is the decrease in length of the poly(A) tail of an mRNA from full length to an oligo(A) length.","definition_xrefs":["GOC:dph","GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of nuclear-transcribed mRNA poly(A) tail shortening","termid":"GO:0060211"},{"relation_name":"is_a","term_name":"positive regulation of mRNA catabolic process","termid":"GO:0061014"},{"relation_name":"positively_regulates","term_name":"nuclear-transcribed mRNA poly(A) tail shortening","termid":"GO:0000289"}],"gene_count":3,"genes_by_uniquename":{"SJAG_00686":null,"SJAG_01436":null,"SJAG_04682":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0010467"},{"rel_name":"positively_regulates","termid":"GO:0044248"},{"rel_name":"regulates","termid":"GO:0016071"},{"rel_name":"positively_regulates","termid":"GO:0016071"},{"rel_name":"regulates","termid":"GO:0044248"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0044248","GO:0010467","GO:0016071","GO:0008150"],"is_obsolete":false,"name":"positive regulation of nuclear-transcribed mRNA poly(A) tail shortening","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"positive regulation of 3' to 5' mRNA deadenylation","type":"related"},{"name":"positive regulation of mRNA deadenylation","type":"related"},{"name":"positive regulation of nuclear mRNA poly(A) tail shortening","type":"related"}],"termid":"GO:0060213","terms_by_termid":{"GO:0060213":null}}


id: SO:0000243
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"Sequence element that recruits a ribosomal subunit to internal mRNA for translation initiation.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ribosome_entry_site","termid":"SO:0000139"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"internal_ribosome_entry_site","secondary_identifiers":["http://en.wikipedia.org/wiki/Internal_ribosome_entry_site"],"synonyms":[{"name":"IRES","type":"exact"},{"name":"internal ribosomal entry sequence","type":"exact"},{"name":"internal ribosomal entry site","type":"exact"},{"name":"internal ribosome entry sequence","type":"related"},{"name":"internal ribosome entry site","type":"exact"}],"termid":"SO:0000243"}


id: PBO:0044524
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dachshund family transcription factor 1","termid":"PBO:0044524"}


id: PBO:0073623
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sialic acid binding Ig like lectin 9","termid":"PBO:0073623"}


id: GO:0004038
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: allantoin + H2O = allantoate.","definition_xrefs":["EC:3.5.2.5"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides","termid":"GO:0016812"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016810"},{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016810","GO:0016787","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"allantoinase activity","secondary_identifiers":["MetaCyc:ALLANTOINASE-RXN","RHEA:17029"],"synonyms":[{"name":"(S)-allantoin amidohydrolase activity","type":"related"}],"termid":"GO:0004038"}


id: PBO:0043137
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"capicua transcriptional repressor pseudogene 5","termid":"PBO:0043137"}


id: PBO:0044471
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cytochrome P450 family 11 subfamily A member 1","termid":"PBO:0044471"}


id: PBO:0049133
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"G protein pathway suppressor 1","termid":"PBO:0049133"}


id: PBO:0029103
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_cellular_alanine_level","termid":"PBO:0029103"}


id: GO:0140869
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Stops, prevents or reduces the activity of miRNA-mediated gene silencing activity by base-pairing with a target miRNA. An example of this activity is mediated by long non-coding RNAs (lncRNAs).","definition_xrefs":["PMID:34454184"],"direct_ancestors":[{"relation_name":"is_a","term_name":"miRNA binding","termid":"GO:0035198"},{"relation_name":"is_a","term_name":"molecular function inhibitor activity","termid":"GO:0140678"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0098772"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0140678"},{"rel_name":"is_a","termid":"GO:0003723"}],"interesting_parent_ids":["GO:0003674","GO:0003723","GO:0005488","GO:0140678","GO:0098772"],"is_obsolete":false,"name":"miRNA inhibitor activity via base-pairing","synonyms":[{"name":"base-pairing target-directed miRNA suppressor activity","type":"related"},{"name":"base-pairing target-directed microRNA suppressor activity","type":"related"},{"name":"miRNA base-pairing repressor activity","type":"narrow"},{"name":"miRNA binding involved in posttranscriptional gene silencing","type":"exact"},{"name":"miRNA inhibitor activity","type":"broad"},{"name":"miRNA sponge","type":"narrow"}],"termid":"GO:0140869"}


id: PBO:0008071
data:
  {"annotation_feature_type":"gene","cv_name":"complementation","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"functionally complemented by S. cerevisiae KEX2","termid":"PBO:0008071"}


id: GO:0016242
data:
  {"annotated_genes":["SJAG_02723"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[102835],"is_not":false,"summary":null,"term":"GO:0016242"}]},"cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of macroautophagy.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of autophagy","termid":"GO:0010507"},{"relation_name":"is_a","term_name":"regulation of macroautophagy","termid":"GO:0016241"},{"relation_name":"negatively_regulates","term_name":"macroautophagy","termid":"GO:0016236"}],"gene_count":1,"genes_by_uniquename":{"SJAG_02723":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"negatively_regulates","termid":"GO:0006914"},{"rel_name":"negatively_regulates","termid":"GO:0044248"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0006914"},{"rel_name":"regulates","termid":"GO:0044248"}],"interesting_parent_ids":["GO:0044248","GO:0008150","GO:0006914"],"is_obsolete":false,"name":"negative regulation of macroautophagy","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"down regulation of macroautophagy","type":"exact"},{"name":"down-regulation of macroautophagy","type":"exact"},{"name":"downregulation of macroautophagy","type":"exact"},{"name":"inhibition of macroautophagy","type":"narrow"},{"name":"negative regulation of starvation-induced autophagy","type":"exact"}],"termid":"GO:0016242","terms_by_termid":{"GO:0016242":null}}


id: GO:0009294
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The direct uptake and incorporation of exogenous genetic material (DNA or RNA) into a cell from its surroundings through the cell envelope.","definition_xrefs":["PMID:27826682","PMID:12706993","PMID:24509783"],"direct_ancestors":[{"relation_name":"is_a","term_name":"horizontal gene transfer","termid":"GO:0009292"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"DNA-mediated transformation","synonyms":[{"name":"DNA mediated transformation","type":"exact"}],"termid":"GO:0009294"}


id: SO:1000153
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"An insertional duplication where a copy of the segment between the first two breaks listed is inserted at the third break; the insertion is in cytologically inverted orientation with respect to its flanking segments.","definition_xrefs":["FB:reference_manual"],"direct_ancestors":[{"relation_name":"is_a","term_name":"insertional_duplication","termid":"SO:1000154"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"inverted_insertional_duplication","synonyms":[{"name":"(Drosophila)iDp","type":"related"},{"name":"inverted insertional duplication","type":"exact"}],"termid":"SO:1000153"}


id: GO:1903605
data:
  {"annotated_genes":["SJAG_03199","SJAG_04008"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[103666,90637],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1903607"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of a cytochrome.","definition_xrefs":["GOC:dph","GOC:TermGenie","GO_REF:0000068","PMID:19721088"],"direct_ancestors":[{"relation_name":"is_a","term_name":"macromolecule biosynthetic process","termid":"GO:0009059"},{"relation_name":"is_a","term_name":"organonitrogen compound biosynthetic process","termid":"GO:1901566"},{"relation_name":"is_a","term_name":"cytochrome metabolic process","termid":"GO:1903604"}],"gene_count":2,"genes_by_uniquename":{"SJAG_03199":null,"SJAG_04008":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cytochrome biosynthetic process","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"cytochrome anabolism","type":"exact"},{"name":"cytochrome biosynthesis","type":"exact"},{"name":"cytochrome formation","type":"exact"},{"name":"cytochrome synthesis","type":"exact"}],"termid":"GO:1903605","terms_by_termid":{"GO:1903607":null}}


id: GO:0042444
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of phenylethylamine, an amine with pharmacological properties similar to those of amphetamine, occurs naturally as a neurotransmitter in the brain, and is present in chocolate and oil of bitter almonds.","definition_xrefs":["ISBN:0395825172","GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"biogenic amine biosynthetic process","termid":"GO:0042401"},{"relation_name":"is_a","term_name":"phenylethylamine metabolic process","termid":"GO:0042443"},{"relation_name":"is_a","term_name":"primary amino compound biosynthetic process","termid":"GO:1901162"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"phenylethylamine biosynthetic process","synonyms":[{"name":"phenylethylamine anabolism","type":"exact"},{"name":"phenylethylamine biosynthesis","type":"exact"},{"name":"phenylethylamine formation","type":"exact"},{"name":"phenylethylamine synthesis","type":"exact"}],"termid":"GO:0042444"}


id: GO:0046505
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving sulfolipids, any compound containing a sulfonic acid residue joined by a carbon-sulfur bond to a lipid.","definition_xrefs":["PMID:9751667"],"direct_ancestors":[{"relation_name":"is_a","term_name":"sulfur compound metabolic process","termid":"GO:0006790"},{"relation_name":"is_a","term_name":"cellular lipid metabolic process","termid":"GO:0044255"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006790"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006629"}],"interesting_parent_ids":["GO:0006790","GO:0008150","GO:0006629"],"is_obsolete":false,"name":"sulfolipid metabolic process","synonyms":[{"name":"sulfolipid metabolism","type":"exact"},{"name":"sulpholipid metabolic process","type":"exact"},{"name":"sulpholipid metabolism","type":"exact"}],"termid":"GO:0046505"}


id: GO:0016125
data:
  {"annotated_genes":["SJAG_02719","SJAG_00580","SJAG_00261","SJAG_01307","SJAG_04049","SJAG_02044","SJAG_03929","SJAG_03715","SJAG_03750","SJAG_04059","SJAG_03024","SJAG_02068","SJAG_02982","SJAG_03349","SJAG_03598","SJAG_03018","SJAG_02104","SJAG_00717","SJAG_04790","SJAG_03249","SJAG_04018","SJAG_01474","SJAG_00624","SJAG_02855","SJAG_00413","SJAG_00770","SJAG_03509","SJAG_04499","SJAG_03352","SJAG_00453","SJAG_04270","SJAG_04217","SJAG_00370","SJAG_04810","SJAG_03235","SJAG_00158","SJAG_04865","SJAG_03531"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[97661],"is_not":false,"summary":null,"term":"GO:0016125"},{"annotations":[99544,84723,104036,115011,105681,95038,105439,103903,102711,111082,111254,111412,92789,84971,100182,100452,103722,108003,100637,85886,85004,88748,112724,90833,107495,87693,88801,95771,94239,90642,100879,106281,84942],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006696"},{"annotations":[90087],"is_not":false,"rel_names":["negatively_regulates","regulates"],"summary":null,"term":"GO:0010895"},{"annotations":[106051],"is_not":false,"rel_names":["positively_regulates","regulates"],"summary":null,"term":"GO:0070452"},{"annotations":[106052],"is_not":false,"rel_names":["regulates"],"summary":null,"term":"GO:0045540"},{"annotations":[84811,84812,102017],"is_not":false,"rel_names":["regulates"],"summary":null,"term":"GO:0032443"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways involving sterols, steroids with one or more hydroxyl groups and a hydrocarbon side-chain in the molecule.","definition_xrefs":["ISBN:0198547684"],"direct_ancestors":[{"relation_name":"is_a","term_name":"steroid metabolic process","termid":"GO:0008202"},{"relation_name":"is_a","term_name":"organic hydroxy compound metabolic process","termid":"GO:1901615"}],"gene_count":38,"genes_by_uniquename":{"SJAG_00158":null,"SJAG_00261":null,"SJAG_00370":null,"SJAG_00413":null,"SJAG_00453":null,"SJAG_00580":null,"SJAG_00624":null,"SJAG_00717":null,"SJAG_00770":null,"SJAG_01307":null,"SJAG_01474":null,"SJAG_02044":null,"SJAG_02068":null,"SJAG_02104":null,"SJAG_02719":null,"SJAG_02855":null,"SJAG_02982":null,"SJAG_03018":null,"SJAG_03024":null,"SJAG_03235":null,"SJAG_03249":null,"SJAG_03349":null,"SJAG_03352":null,"SJAG_03509":null,"SJAG_03531":null,"SJAG_03598":null,"SJAG_03715":null,"SJAG_03750":null,"SJAG_03929":null,"SJAG_04018":null,"SJAG_04049":null,"SJAG_04059":null,"SJAG_04217":null,"SJAG_04270":null,"SJAG_04499":null,"SJAG_04790":null,"SJAG_04810":null,"SJAG_04865":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006629"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006629","GO:0008150"],"is_obsolete":false,"name":"sterol metabolic process","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"sterol metabolism","type":"exact"}],"termid":"GO:0016125","terms_by_termid":{"GO:0006696":null,"GO:0010895":null,"GO:0016125":null,"GO:0032443":null,"GO:0045540":null,"GO:0070452":null}}


id: GO:1901246
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of lung ciliated cell differentiation.","definition_xrefs":["GOC:TermGenie","GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of epithelial cell differentiation","termid":"GO:0030856"},{"relation_name":"regulates","term_name":"lung ciliated cell differentiation","termid":"GO:0061141"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of lung ciliated cell differentiation","termid":"GO:1901246"}


id: GO:0150093
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which amyloid-beta is removed from extracellular brain regions by cell surface receptor-mediated endocytosis, followed by transcytosis across the blood-brain barrier.","definition_xrefs":["GOC:bc","PMID:26005850","GOC:aruk"],"direct_ancestors":[{"relation_name":"is_a","term_name":"transcytosis","termid":"GO:0045056"},{"relation_name":"is_a","term_name":"amyloid-beta clearance","termid":"GO:0097242"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0016192"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0008150","GO:0051179","GO:0006810","GO:0016192"],"is_obsolete":false,"name":"amyloid-beta clearance by transcytosis","termid":"GO:0150093"}


id: GO:0002579
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate, or extent of antigen processing and presentation.","definition_xrefs":["GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of antigen processing and presentation","termid":"GO:0002577"},{"relation_name":"is_a","term_name":"positive regulation of immune system process","termid":"GO:0002684"},{"relation_name":"positively_regulates","term_name":"antigen processing and presentation","termid":"GO:0019882"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of antigen processing and presentation","synonyms":[{"name":"activation of antigen processing and presentation","type":"narrow"},{"name":"stimulation of antigen processing and presentation","type":"narrow"},{"name":"up regulation of antigen processing and presentation","type":"exact"},{"name":"up-regulation of antigen processing and presentation","type":"exact"},{"name":"upregulation of antigen processing and presentation","type":"exact"}],"termid":"GO:0002579"}


id: PBO:0087663
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Subunit of the import motor (PAM complex); the PAM complex is a  component of the Translocase of the Inner Mitochondrial membrane (TIM23 complex); forms a 1:1 subcomplex with Pam18p and inhibits its cochaperone activity; contains a J-like domain","termid":"PBO:0087663"}


id: FYECO:0000030
data:
  {"annotation_feature_type":"gene","cv_name":"fission_yeast_phenotype_condition","definition":"An experimental condition in which ions were added to the assay buffer in excess compared to standard assay buffers.","definition_xrefs":["PomBase:al"],"direct_ancestors":[{"relation_name":"is_a","term_name":"grouping excess","termid":"FYECO:0000109"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"+ ions","termid":"FYECO:0000030"}


id: PBO:0001659
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SM22/transgelin-like actin modulating protein Stg1","termid":"PBO:0001659"}


id: FYPO:0002298
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"OBSOLETE. A mixed population phenotype in which all cells in a population are inviable germinated spores with elongated germ tubes, and in which some cells divide once and others do not divide. In the cells that divide once, an inviable cell forms from the growing end of the germ tube, but does not divide further.","definition_xrefs":["PomBase:mah","PomBase:vw"],"gene_count":0,"genotype_count":0,"name":"obsolete inviable mixed population including divided and undivided germinated spores, with elongated germ tubes (obsolete FYPO:0002298)","termid":"FYPO:0002298"}


id: PBO:0004766
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ESCRT II complex subunit Vps36","termid":"PBO:0004766"}


id: GO:0035502
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The development of the portion of the ureteric bud tube that contributes to the morphogenesis of the metanephros.","definition_xrefs":["GOC:mtg_kidney_jan10"],"direct_ancestors":[{"relation_name":"is_a","term_name":"tube development","termid":"GO:0035295"},{"relation_name":"part_of","term_name":"ureteric bud development","termid":"GO:0001657"},{"relation_name":"part_of","term_name":"metanephros morphogenesis","termid":"GO:0003338"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"metanephric part of ureteric bud development","termid":"GO:0035502"}


id: GO:0043473
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The accumulation of pigment in an organism, tissue or cell, either by increased deposition or by increased number of cells.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"biological_process","termid":"GO:0008150"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"pigmentation","termid":"GO:0043473"}


id: GO:0047232
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: D-galactosyl-1,4-N-acetyl-beta-D-glucosaminyl-1,3-beta-D-galactosyl-1,4-beta-D-glucosylceramide + UDP-N-acetyl-D-glucosamine = N-acetyl-D-glucosaminyl-1,6-beta-D-galactosyl-1,4-N-acetyl-beta-D-glucosaminyl-1,3-beta-D-galactosyl-1,4-beta-D-glucosyceramide + UDP.","definition_xrefs":["MetaCyc:2.4.1.164-RXN","EC:2.4.1.164"],"direct_ancestors":[{"relation_name":"is_a","term_name":"acetylglucosaminyltransferase activity","termid":"GO:0008375"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016757"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016757","GO:0003824","GO:0003674","GO:0016740"],"is_obsolete":false,"name":"galactosyl-N-acetylglucosaminylgalactosylglucosyl-ceramide beta-1,6-N-acetylglucosaminyltransferase activity","secondary_identifiers":["MetaCyc:2.4.1.150-RXN"],"synonyms":[{"name":"UDP-N-acetyl-D-glucosamine:D-galactosyl-1,4-N-acetyl-beta-D-glucosaminyl-1,3-beta-D-galactosyl-1,4-beta-D-glucosylceramide beta-1,6-N-acetylglucosaminyltransferase activity","type":"related"},{"name":"uridine diphosphoacetylglucosamine-acetyllactosaminide beta1->6-acetylglucosaminyltransferase","type":"broad"}],"termid":"GO:0047232"}


id: GO:0002684
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate, or extent of an immune system process.","definition_xrefs":["GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of immune system process","termid":"GO:0002682"},{"relation_name":"is_a","term_name":"positive regulation of biological process","termid":"GO:0048518"},{"relation_name":"positively_regulates","term_name":"immune system process","termid":"GO:0002376"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of immune system process","synonyms":[{"name":"activation of immune system process","type":"narrow"},{"name":"stimulation of immune system process","type":"narrow"},{"name":"up regulation of immune system process","type":"exact"},{"name":"up-regulation of immune system process","type":"exact"},{"name":"upregulation of immune system process","type":"exact"}],"termid":"GO:0002684"}


id: GO:0061360
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The developmental process pertaining to the progression of the optic chiasm from its initial formation to the mature structure. The process begins when the pathfinding of the axons of the developing optic nerve cause some axons to cross at the midline of the brain and ends when the axons are mature.","definition_xrefs":["GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"anatomical structure development","termid":"GO:0048856"},{"relation_name":"part_of","term_name":"optic nerve development","termid":"GO:0021554"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"optic chiasma development","synonyms":[{"name":"optic chiasm development","type":"exact"}],"termid":"GO:0061360"}


id: PBO:0090604
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"wybutosine biosynthesis protein Tyw1","termid":"PBO:0090604"}


id: GO:0022027
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The movement of the nucleus of the ventricular zone cell between the apical and the basal zone surfaces. Mitosis occurs when the nucleus is near the apical surface, that is, the lumen of the ventricle.","definition_xrefs":["GOC:jid","GOC:dph","GOC:cls","GO_REF:0000021","GOC:dgh"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nuclear migration","termid":"GO:0007097"},{"relation_name":"part_of","term_name":"cell proliferation in forebrain","termid":"GO:0021846"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0051179"}],"interesting_parent_ids":["GO:0051179","GO:0006810","GO:0008150"],"is_obsolete":false,"name":"interkinetic nuclear migration","termid":"GO:0022027"}


id: GO:1904644
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a curcumin stimulus.","definition_xrefs":["GOC:TermGenie","PMID:24755072","GO_REF:0000071"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular response to ether","termid":"GO:0071362"},{"relation_name":"is_a","term_name":"cellular response to organic cyclic compound","termid":"GO:0071407"},{"relation_name":"is_a","term_name":"cellular response to ketone","termid":"GO:1901655"},{"relation_name":"is_a","term_name":"response to curcumin","termid":"GO:1904643"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cellular response to curcumin","termid":"GO:1904644"}


id: PBO:0070228
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U7 small nuclear 164 pseudogene","termid":"PBO:0070228"}


id: GO:0070634
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The directed movement of ammonium ions from one side of an epithelium to the other.","definition_xrefs":["GOC:mah","GOC:yaf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"transepithelial transport","termid":"GO:0070633"},{"relation_name":"is_a","term_name":"nitrogen compound transport","termid":"GO:0071705"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0006810","GO:0051179","GO:0008150"],"is_obsolete":false,"name":"transepithelial ammonium transport","termid":"GO:0070634"}


id: PBO:0083520
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Dubious open reading frame; unlikely to encode a functional protein, based on available experimental and comparative sequence data; partially overlaps the verified ORF MST27","termid":"PBO:0083520"}


id: PBO:0089584
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain","termid":"PBO:0089584"}


id: PBO:0053082
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"lysosome cell death regulator","termid":"PBO:0053082"}


id: GO:2001265
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of C-C chemokine binding.","definition_xrefs":["GOC:obol"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of protein binding","termid":"GO:0032092"},{"relation_name":"is_a","term_name":"regulation of C-C chemokine binding","termid":"GO:2001263"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of C-C chemokine binding","termid":"GO:2001265"}


id: PBO:0082820
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Conserved NADPH oxidoreductase containing flavin mononucleotide (FMN); responsible for geraniol reduction into citronellol during fermentation; homologous to Oye3p with different ligand binding and catalytic properties; may be involved in sterol metabolism, oxidative stress response, and programmed cell death; protein abundance increases in response to DNA replication stress","termid":"PBO:0082820"}


id: GO:0036123
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The modification of histone H3 by addition of two methyl groups to lysine at position 9 of the histone.","definition_xrefs":["GOC:vw"],"gene_count":0,"genotype_count":0,"name":"obsolete histone H3-K9 dimethylation (obsolete GO:0036123)","synonyms":[{"name":"histone H3 K9 dimethylation","type":"exact"},{"name":"histone lysine H3 K9 dimethylation","type":"exact"}],"termid":"GO:0036123"}


id: GO:1902486
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process in which a protein is transported to, or maintained in, a location within a growing cell tip.","definition_xrefs":["GOC:TermGenie","PMID:23041194"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein localization to cell tip","termid":"GO:1990151"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0051179"}],"interesting_parent_ids":["GO:0008150","GO:0051179"],"is_obsolete":false,"name":"protein localization to growing cell tip","synonyms":[{"name":"protein localisation in growing cell tip","type":"exact"},{"name":"protein localisation to growing cell tip","type":"exact"},{"name":"protein localization in growing cell tip","type":"exact"}],"termid":"GO:1902486"}


id: PBO:0052680
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"keratin 8 pseudogene 48","termid":"PBO:0052680"}


id: PBO:0065339
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"prune exopolyphosphatase 1","termid":"PBO:0065339"}


id: PBO:0050964
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"interferon lambda receptor 1","termid":"PBO:0050964"}


id: GO:0033441
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"A triplet codon-amino acid adaptor activity that recognizes an AAU codon.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"triplet codon-amino acid adaptor activity","termid":"GO:0030533"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003723"},{"rel_name":"is_a","termid":"GO:0060090"}],"interesting_parent_ids":["GO:0005488","GO:0003674","GO:0003723","GO:0060090"],"is_obsolete":false,"name":"AAU codon-amino acid adaptor activity","synonyms":[{"name":"AAT codon-amino acid adaptor activity","type":"exact"},{"name":"asparagine tRNA","type":"related"}],"termid":"GO:0033441"}


id: GO:0061193
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The progression of the taste bud over time, from its formation to the mature state. The taste bud is a specialized area of the tongue that contains taste receptors.","definition_xrefs":["GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"sensory organ development","termid":"GO:0007423"},{"relation_name":"part_of","term_name":"tongue development","termid":"GO:0043586"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"taste bud development","termid":"GO:0061193"}


id: PBO:0085528
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein component of the small (40S) ribosomal subunit; homologous to mammalian ribosomal protein S27, no bacterial homolog; RPS27B has a paralog, RPS27A, that arose from the whole genome duplication","termid":"PBO:0085528"}


id: PBO:0078923
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-Arg (anticodon ACG) 1-2","termid":"PBO:0078923"}


id: PBO:0007772
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"iron-sulfur cluster biogenesis protein (predicted)","termid":"PBO:0007772"}


id: GO:1905370
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A protein complex which is capable of serine-type endopeptidase activity.","definition_xrefs":["GOC:TermGenie","GOC:bhm","PMID:1689240","GO_REF:0000088"],"direct_ancestors":[{"relation_name":"is_a","term_name":"serine-type peptidase complex","termid":"GO:1905286"},{"relation_name":"is_a","term_name":"endopeptidase complex","termid":"GO:1905369"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0032991","GO:0005575"],"is_obsolete":false,"name":"serine-type endopeptidase complex","termid":"GO:1905370"}


id: PBO:0042287
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CD2 associated protein","termid":"PBO:0042287"}


id: PBO:0045390
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DPP10 antisense RNA 1","termid":"PBO:0045390"}


id: PBO:0040432
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ATPase copper transporting beta pseudogene 1","termid":"PBO:0040432"}


id: GO:0120095
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"An organelle membrane contact site formed at the junction of the vacuolar membrane and the isolation membrane or phagophore in response to starvation or other stresses, leading to the formation of the autophagosome.","definition_xrefs":["PMID:23549786"],"direct_ancestors":[{"relation_name":"is_a","term_name":"organelle membrane contact site","termid":"GO:0044232"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"vacuole-isolation membrane contact site","synonyms":[{"name":"VICS","type":"related"},{"name":"vacuole-IM contact site","type":"exact"},{"name":"vacuole-phagophore contact site","type":"exact"}],"termid":"GO:0120095"}


id: PBO:0005084
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial aspartate-tRNA ligase (predicted)","termid":"PBO:0005084"}


id: GO:0000009
data:
  {"annotated_genes":["SJAG_03555","SJAG_01276","SJAG_00295","SJAG_03056","SJAG_00816","SJAG_00437","SJAG_04770"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[83757,83758,94085,101129,108894],"is_not":false,"summary":null,"term":"GO:0000009"},{"annotations":[101181],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0052917"},{"annotations":[87432,98485,83759],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0033164"}]},"cv_name":"molecular_function","definition":"Catalysis of the transfer of a mannose residue to an oligosaccharide, forming an alpha-(1->6) linkage.","definition_xrefs":["PMID:2644248","GOC:mcc"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mannosyltransferase activity","termid":"GO:0000030"}],"gene_count":7,"genes_by_uniquename":{"SJAG_00295":null,"SJAG_00437":null,"SJAG_00816":null,"SJAG_01276":null,"SJAG_03056":null,"SJAG_03555":null,"SJAG_04770":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016757"}],"interesting_parent_ids":["GO:0016740","GO:0016757","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"alpha-1,6-mannosyltransferase activity","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["Reactome:R-HSA-449718"],"synonyms":[{"name":"1,6-alpha-mannosyltransferase activity","type":"exact"}],"termid":"GO:0000009","terms_by_termid":{"GO:0000009":null,"GO:0033164":null,"GO:0052917":null}}


id: PBO:0072901
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"suppressor of cancer cell invasion","termid":"PBO:0072901"}


id: PR:Q9P6Q5
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A deoxyuridine 5'-triphosphate nucleotidohydrolase, mitochondrial that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO01122","PANTHER:PTHR11241:SF0","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"deoxyuridine 5'-triphosphate nucleotidohydrolase (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC644.05c","secondary_identifiers":["UniProtKB:Q9P6Q5"],"synonyms":[{"name":"Spom972h-DUT","type":"exact"},{"name":"dUTP pyrophosphatase (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"dUTPase (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:Q9P6Q5"}


id: GO:0090579
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The formation and maintenance of DNA loops that juxtapose separated regions on the same dsDNA molecule.","definition_xrefs":["PMID:15950878","GOC:jh"],"gene_count":0,"genotype_count":0,"name":"obsolete dsDNA loop formation (obsolete GO:0090579)","synonyms":[{"name":"chromatin looping","type":"related"},{"name":"dsDNA looping","type":"exact"}],"termid":"GO:0090579"}


id: SO:0001533
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A splice site that is in part of the transcript not normally spliced. They occur via mutation or transcriptional error.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"splice_site","termid":"SO:0000162"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cryptic_splice_site","synonyms":[{"name":"cryptic splice signal","type":"related"},{"name":"cryptic splice site","type":"exact"}],"termid":"SO:0001533"}


id: GO:0050694
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: N-acetyllactosamine + 3'-phosphoadenosine 5'-phosphosulfate = 3-sulfo-N-acetyllactosamine + adenosine 3',5'-bisphosphate. N-acetyllactosamine residues are found in a number of different carbohydrate types. N-acetyllactosamine can also be written as Gal-beta-(1,4)-GlcNAc.","definition_xrefs":["PMID:11356829","PMID:11323440","GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"sulfotransferase activity","termid":"GO:0008146"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016782"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016740"}],"interesting_parent_ids":["GO:0016740","GO:0016782","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"galactose 3-O-sulfotransferase activity","synonyms":[{"name":"Gal-3-O-sulfotransferase activity","type":"exact"},{"name":"galactose 3-O-sulphotransferase activity","type":"exact"}],"termid":"GO:0050694"}


id: PR:P87176
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- slx8 gene.","definition_xrefs":["UniProtKB:P87176","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"E3 ubiquitin-protein ligase complex slx8-rfp subunit slx8 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC3D6.11c","synonyms":[{"name":"RING finger protein slx8 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"RING-dependent E3 ubiquitin-protein ligase slx8 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-slx8","type":"exact"},{"name":"synthetic lethal of unknown function protein 8 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:P87176"}


id: GO:0047739
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: cephalosporin C + H2O = acetate + deacetylcephalosporin C + H+.","definition_xrefs":["EC:3.1.1.41","RHEA:22596"],"direct_ancestors":[{"relation_name":"is_a","term_name":"deacetylase activity","termid":"GO:0019213"},{"relation_name":"is_a","term_name":"carboxylic ester hydrolase activity","termid":"GO:0052689"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016788"},{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0019213"}],"interesting_parent_ids":["GO:0016788","GO:0003674","GO:0016787","GO:0003824","GO:0019213"],"is_obsolete":false,"name":"cephalosporin-C deacetylase activity","secondary_identifiers":["MetaCyc:CEPHALOSPORIN-C-DEACETYLASE-RXN","KEGG_REACTION:R03062"],"synonyms":[{"name":"cephalosporin C acetyl-esterase activity","type":"related"},{"name":"cephalosporin C acetyl-hydrolase activity","type":"related"},{"name":"cephalosporin C acetylase activity","type":"related"},{"name":"cephalosporin C acetylesterase activity","type":"related"},{"name":"cephalosporin C deacetylase activity","type":"related"},{"name":"cephalosporin acetylesterase activity","type":"related"},{"name":"cephalosporin-C acetylhydrolase activity","type":"related"}],"termid":"GO:0047739"}


id: GO:0039005
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which the tubules arranged along the proximal/distal axis of the pronephric nephron acquire their identity.","definition_xrefs":["GOC:mtg_kidney_jan10"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pattern specification involved in pronephros development","termid":"GO:0039017"},{"relation_name":"is_a","term_name":"specification of nephron tubule identity","termid":"GO:0072081"},{"relation_name":"part_of","term_name":"pronephric nephron tubule morphogenesis","termid":"GO:0039008"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"specification of pronephric tubule identity","termid":"GO:0039005"}


id: PBO:0056329
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitogen-activated protein kinase kinase kinase 10","termid":"PBO:0056329"}


id: PBO:0045269
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dynamin 1 pseudogene 9","termid":"PBO:0045269"}


id: PBO:0058192
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 4485","termid":"PBO:0058192"}


id: FYPO:0005966
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the import of potassium ions into a cell is abnormal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal transport during vegetative growth","termid":"FYPO:0005973"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0000138","FYPO:0001985","FYPO:0000002","FYPO:0001320"],"is_obsolete":false,"name":"abnormal potassium import","synonyms":[{"name":"abnormal cellular potassium import","type":"exact"},{"name":"abnormal potassium import across plasma membrane","type":"exact"},{"name":"abnormal potassium import during mitotic cell cycle","type":"related"},{"name":"abnormal potassium import during vegetative growth","type":"exact"},{"name":"abnormal potassium import into cell","type":"exact"},{"name":"abnormal potassium ion import","type":"exact"}],"termid":"FYPO:0005966"}


id: PBO:0026723
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_transcript_length","termid":"PBO:0026723"}


id: PBO:0066145
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RBBP4 pseudogene 1","termid":"PBO:0066145"}


id: PBO:0005620
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"serine/threonine protein kinase Cek1","termid":"PBO:0005620"}


id: GO:0018561
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 2'-aminobiphenyl-2,3-diol + O2 = H+ + 2-hydroxy-6-oxo-(2'-aminophenyl)-hexa-2,4-dienoate.","definition_xrefs":["UM-BBD_reactionID:r0457"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen","termid":"GO:0016702"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0003824","GO:0016491","GO:0003674"],"is_obsolete":false,"name":"2'-aminobiphenyl-2,3-diol 1,2-dioxygenase activity","secondary_identifiers":["EC:1.13.11.-"],"termid":"GO:0018561"}


id: GO:0070793
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of conidiophore development, a process that leads to the formation of a conidiophore. The conidiophore is a specialized hypha that extends aerially from the growth substrate and bears conidia, or asexual spores.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of spore-bearing organ development","termid":"GO:0075260"},{"relation_name":"regulates","term_name":"conidiophore development","termid":"GO:0070787"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of conidiophore development","termid":"GO:0070793"}


id: PBO:0078750
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA methyltransferase 11 homolog","termid":"PBO:0078750"}


id: SO:0000658
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A repeat that is located at dispersed sites in the genome.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"repeat_region","termid":"SO:0000657"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dispersed_repeat","secondary_identifiers":["http://en.wikipedia.org/wiki/Interspersed_repeat"],"synonyms":[{"name":"INSDC_feature:repeat_region","type":"broad"},{"name":"INSDC_qualifier:dispersed","type":"exact"},{"name":"dispersed repeat","type":"exact"},{"name":"interspersed repeat","type":"exact"}],"termid":"SO:0000658"}


id: PBO:0029028
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abolished_protein_localization_to_mitotic_spindle_pole_body_during_interphase","termid":"PBO:0029028"}


id: GO:1902281
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of ATP-dependent RNA helicase activity.","definition_xrefs":["GOC:rb","PMID:23721653","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of helicase activity","termid":"GO:0051097"},{"relation_name":"is_a","term_name":"regulation of RNA helicase activity","termid":"GO:1902280"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of RNA helicase activity","synonyms":[{"name":"down regulation of ATP-dependent RNA helicase activity","type":"exact"},{"name":"down-regulation of ATP-dependent RNA helicase activity","type":"exact"},{"name":"downregulation of ATP-dependent RNA helicase activity","type":"exact"},{"name":"inhibition of ATP-dependent RNA helicase activity","type":"narrow"},{"name":"negative regulation of ATP-dependent RNA helicase activity","type":"exact"}],"termid":"GO:1902281"}


id: GO:0015882
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which L-ascorbic acid is transported across a lipid bilayer, from one side of a membrane to the other. L-ascorbate, (2R)-2-[(1S)-1,2-dihydroxyethyl]-4-hydroxy-5-oxo-2,5-dihydrofuran-3-olate, is vitamin C and has co-factor and anti-oxidant activities in many species.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"monosaccharide transmembrane transport","termid":"GO:0015749"},{"relation_name":"is_a","term_name":"vitamin transmembrane transport","termid":"GO:0035461"},{"relation_name":"is_a","term_name":"carboxylic acid transmembrane transport","termid":"GO:1905039"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0055085"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0051179"}],"interesting_parent_ids":["GO:0055085","GO:0006810","GO:0051179","GO:0008150"],"is_obsolete":false,"name":"L-ascorbic acid transmembrane transport","synonyms":[{"name":"L-ascorbate transport","type":"exact"},{"name":"L-ascorbic acid transport","type":"related"},{"name":"vitamin C transport","type":"exact"}],"termid":"GO:0015882"}


id: GO:0019652
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The anaerobic enzymatic conversion of lactate to propionate, concomitant with the oxidation of lactate to acetate and CO2 and yielding energy in the form of adenosine triphosphate (ATP).","definition_xrefs":["MetaCyc:PROPFERM-PWY","GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"propionate metabolic process","termid":"GO:0019541"},{"relation_name":"is_a","term_name":"non-glycolytic fermentation","termid":"GO:0019662"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006629"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006091"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0006629","GO:0008150","GO:0006091","GO:0044281"],"is_obsolete":false,"name":"lactate fermentation to propionate and acetate","synonyms":[{"name":"acrylate pathway","type":"exact"},{"name":"nonrandomizing pathway","type":"exact"},{"name":"propionate fermentation","type":"exact"}],"termid":"GO:0019652"}


id: PBO:0051362
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"immunoglobulin kappa variable 3-15","termid":"PBO:0051362"}


id: PBO:0049475
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"granzyme M","termid":"PBO:0049475"}


id: CHEBI:75142
data:
  {"annotation_feature_type":"gene","cv_name":"chebi_ontology","direct_ancestors":[{"relation_name":"is_a","term_name":"chemical entity","termid":"CHEBI:24431"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"N-benzyloxycarbonyl-L-leucyl-L-leucyl-L-leucinal","termid":"CHEBI:75142"}


id: PBO:0077516
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TMEM231 pseudogene 1","termid":"PBO:0077516"}


id: PBO:0088770
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"translocon gamma subunit Sss1","termid":"PBO:0088770"}


id: GO:0110148
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The process where mineral crystals are formed and deposited in an organized fashion in a matrix (either cellular or extracellular) by living organisms. This gives rise to inorganic compound-based structures such as skeleton, teeth, ivory, shells, cuticle, and corals as well as bacterial biomineralization products.","definition_xrefs":["PMID:24395694","GOC:aa","PMID:28229486"],"gene_count":0,"genotype_count":0,"name":"obsolete biomineralization (obsolete GO:0110148)","secondary_identifiers":["Wikipedia:Biomineralization"],"synonyms":[{"name":"biomineral formation","type":"narrow"},{"name":"biomineralisation","type":"exact"},{"name":"mineralisation","type":"exact"},{"name":"mineralization","type":"exact"}],"termid":"GO:0110148"}


id: GO:0048104
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Orientation of hairs or sensory bristles that cover the body surface of an adult, such that they all point in a uniform direction along the plane of the epithelium from which they project.","definition_xrefs":["GOC:dph","GOC:ascb_2009","GOC:jid","GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"establishment of planar polarity","termid":"GO:0001736"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"establishment of body hair or bristle planar orientation","termid":"GO:0048104"}


id: FYPO:0007890
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to the kinetochore of a chromosome is normal during mitotic spindle assembly checkpoint signaling.","definition_xrefs":["PomBase:vw"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal protein localization to kinetochore during vegetative growth","termid":"FYPO:0002901"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0001312"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000138"}],"interesting_parent_ids":["FYPO:0000138","FYPO:0001312","FYPO:0000002","FYPO:0000257","FYPO:0001320"],"is_obsolete":false,"name":"normal protein localization to kinetochore during mitotic spindle assembly checkpoint signaling","termid":"FYPO:0007890"}


id: GO:0052611
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: beta-carotene + a reduced electron acceptor + oxygen = beta-cryptoxanthin + an oxidized electron acceptor + H2O.","definition_xrefs":["RHEA:30323"],"direct_ancestors":[{"relation_name":"is_a","term_name":"monooxygenase activity","termid":"GO:0004497"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0003674","GO:0016491","GO:0003824"],"is_obsolete":false,"name":"beta-carotene 3-hydroxylase activity","secondary_identifiers":["MetaCyc:RXN-8025"],"synonyms":[{"name":"beta-carotene hydroxylase activity","type":"broad"},{"name":"carotene beta-ring hydroxylase activity","type":"broad"}],"termid":"GO:0052611"}


id: PBO:0055835
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"leucine rich repeat and fibronectin type III domain containing 5","termid":"PBO:0055835"}


id: PBO:0061483
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"neuregulin 2","termid":"PBO:0061483"}


id: PBO:0088161
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"v-SNARE component of the vacuolar SNARE complex; involved in vesicle fusion; inhibits ATP-dependent Ca(2+) transport activity of Pmc1p in the vacuolar membrane","termid":"PBO:0088161"}


id: PBO:0030979
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_histone_H3-K9_dimethylation","termid":"PBO:0030979"}


id: PATO:0001393
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A ploidy quality inhering in a bearer by virtue of the bearer's containing an integral multiple of the monoploid number, possibly excluding the sex-determining chromosomes.","definition_xrefs":["Wikipedia:http://en.wikipedia.org/wiki/Euploid"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ploidy","termid":"PATO:0001374"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"euploid","termid":"PATO:0001393"}


id: GO:0035975
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The chemical reactions and pathways resulting in the breakdown of carbamoyl phosphate, an intermediate in the urea cycle and other nitrogen compound metabolic pathways.","definition_xrefs":["GOC:yaf","UniPathway:UPA00996"],"gene_count":0,"genotype_count":0,"name":"obsolete carbamoyl phosphate catabolic process (obsolete GO:0035975)","synonyms":[{"name":"carbamoyl phosphate breakdown","type":"exact"},{"name":"carbamoyl phosphate catabolism","type":"exact"},{"name":"carbamoyl phosphate degradation","type":"exact"}],"termid":"GO:0035975"}


id: GO:0098940
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Cell-cell signaling from presynapse to postynapse, across the synaptic cleft, mediated by nitric oxide.","definition_xrefs":["GOC:dos"],"direct_ancestors":[{"relation_name":"is_a","term_name":"anterograde trans-synaptic signaling","termid":"GO:0098916"},{"relation_name":"is_a","term_name":"trans-synaptic signaling by nitric oxide","termid":"GO:0099548"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"anterograde trans-synaptic signaling by nitric oxide","termid":"GO:0098940"}


id: GO:0045773
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of axon extension.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of cell growth","termid":"GO:0030307"},{"relation_name":"is_a","term_name":"regulation of axon extension","termid":"GO:0030516"},{"relation_name":"is_a","term_name":"positive regulation of developmental growth","termid":"GO:0048639"},{"relation_name":"is_a","term_name":"positive regulation of axonogenesis","termid":"GO:0050772"},{"relation_name":"positively_regulates","term_name":"axon extension","termid":"GO:0048675"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of axon extension","synonyms":[{"name":"activation of axon extension","type":"narrow"},{"name":"stimulation of axon extension","type":"narrow"},{"name":"up regulation of axon extension","type":"exact"},{"name":"up-regulation of axon extension","type":"exact"},{"name":"upregulation of axon extension","type":"exact"}],"termid":"GO:0045773"}


id: PBO:0090916
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"proteasome assembly chaperone","termid":"PBO:0090916"}


id: GO:0030297
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binds to and increases the activity of a transmembrane receptor protein tyrosine kinase.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein tyrosine kinase activator activity","termid":"GO:0030296"},{"relation_name":"is_a","term_name":"signaling receptor activator activity","termid":"GO:0030546"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0140677"},{"rel_name":"is_a","termid":"GO:0030234"},{"rel_name":"is_a","termid":"GO:0098772"}],"interesting_parent_ids":["GO:0030234","GO:0140677","GO:0003674","GO:0098772"],"is_obsolete":false,"name":"transmembrane receptor protein tyrosine kinase activator activity","termid":"GO:0030297"}


id: PATO:0000140
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A spatial quality inhering in a bearer by virtue of the bearer's spatial location relative to other objects in the vicinity.","definition_xrefs":["PATOC:GVG"],"direct_ancestors":[{"relation_name":"is_a","term_name":"physical quality","termid":"PATO:0001018"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"position","secondary_identifiers":["PATO:0001032","PATO:0001631"],"synonyms":[{"name":"location","type":"exact"},{"name":"placement","type":"exact"},{"name":"relational spatial quality","type":"exact"}],"termid":"PATO:0000140"}


id: PBO:0030504
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-sensitive_to_bortezomib","termid":"PBO:0030504"}


id: PBO:0070506
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L6 pseudogene 5","termid":"PBO:0070506"}


id: GO:0043891
data:
  {"annotated_genes":["SJAG_00027","SJAG_02135","SJAG_02945","SJAG_03903","SJAG_03828","SJAG_06622","SJAG_06621"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[105145,105601,105144,105148,105149,105600,105603,105598,105602,105597,105143,105147,105599,105146],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004365"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: D-glyceraldehyde 3-phosphate + phosphate + NAD(P)+ = 3-phospho-D-glyceroyl phosphate + NAD(P)H + H+.","definition_xrefs":["EC:1.2.1.59"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor","termid":"GO:0016620"}],"gene_count":7,"genes_by_uniquename":{"SJAG_00027":null,"SJAG_02135":null,"SJAG_02945":null,"SJAG_03828":null,"SJAG_03903":null,"SJAG_06621":null,"SJAG_06622":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0003674","GO:0016491","GO:0003824"],"is_obsolete":false,"name":"glyceraldehyde-3-phosphate dehydrogenase (NAD(P)+) (phosphorylating) activity","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["MetaCyc:GAPDHSYNEC-RXN"],"synonyms":[{"name":"D-glyceraldehyde 3-phosphate:NAD(P)+ oxidoreductase (phosphorylating)","type":"exact"},{"name":"NAD(P)-dependent glyceraldehyde-3-phosphate dehydrogenase activity","type":"related"},{"name":"glyceraldehyde-3-phosphate dehydrogenase (NAD(P)) (phosphorylating)","type":"exact"},{"name":"triosephosphate dehydrogenase (NAD(P))","type":"exact"},{"name":"triosephosphate dehydrogenase (NAD(P)+)","type":"related"}],"termid":"GO:0043891","terms_by_termid":{"GO:0004365":null}}


id: PBO:0049000
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"GPC6 antisense RNA 2","termid":"PBO:0049000"}


id: PBO:0076821
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"terminal nucleotidyltransferase 4B","termid":"PBO:0076821"}


id: FYPO:0007489
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to the Golgi apparatus is decreased, and the protein is present in the cytosol instead.","definition_xrefs":["PomBase:mah","PMID:32918581"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased protein localization to Golgi apparatus","termid":"FYPO:0004786"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000138"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000002","FYPO:0005447","FYPO:0000138","FYPO:0001320"],"is_obsolete":false,"name":"decreased protein localization to Golgi apparatus, with protein mislocalized to cytosol","synonyms":[{"name":"decreased protein localisation to Golgi apparatus, with protein mislocalised to cytosol","type":"exact"},{"name":"decreased protein localization to Golgi apparatus, with protein mislocalized to cytosol during mitotic cell cycle","type":"related"},{"name":"decreased protein localization to Golgi apparatus, with protein mislocalized to cytosol during vegetative growth","type":"exact"},{"name":"reduced protein localization to Golgi apparatus, with protein mislocalized to cytosol","type":"exact"}],"termid":"FYPO:0007489"}


id: PBO:0074521
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small NF90 (ILF3) associated RNA A13","termid":"PBO:0074521"}


id: GO:0046144
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The chemical reactions and pathways involving D-alanine and related amino acids.","definition_xrefs":["GOC:ai"],"gene_count":0,"genotype_count":0,"name":"obsolete D-alanine family amino acid metabolic process (obsolete GO:0046144)","synonyms":[{"name":"D-alanine family amino acid metabolism","type":"exact"}],"termid":"GO:0046144"}


id: GO:2001155
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of glucose catabolic process to ethanol.","definition_xrefs":["GOC:obol"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of carbohydrate metabolic process","termid":"GO:0045912"},{"relation_name":"is_a","term_name":"negative regulation of small molecule metabolic process","termid":"GO:0062014"},{"relation_name":"is_a","term_name":"negative regulation of fermentation","termid":"GO:1901003"},{"relation_name":"is_a","term_name":"regulation of glycolytic fermentation to ethanol","termid":"GO:2001154"},{"relation_name":"negatively_regulates","term_name":"glycolytic fermentation to ethanol","termid":"GO:0019655"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0044281"},{"rel_name":"regulates","termid":"GO:0006091"},{"rel_name":"negatively_regulates","termid":"GO:0044281"},{"rel_name":"negatively_regulates","termid":"GO:0005975"},{"rel_name":"regulates","termid":"GO:0005975"},{"rel_name":"negatively_regulates","termid":"GO:0006091"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0044281","GO:0006091","GO:0008150","GO:0005975"],"is_obsolete":false,"name":"negative regulation of glycolytic fermentation to ethanol","synonyms":[{"name":"negative regulation of ethanol fermentation","type":"exact"},{"name":"negative regulation of glucose fermentation to ethanol","type":"exact"}],"termid":"GO:2001155"}


id: GO:0070520
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A protein complex that consists of an alpha4-beta1 integrin complex bound to membrane protein CD81, a member of the tetraspan family.","definition_xrefs":["PMID:10229664","PMID:8757325"],"direct_ancestors":[{"relation_name":"is_a","term_name":"plasma membrane protein complex","termid":"GO:0098797"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005886"}],"interesting_parent_ids":["GO:0005575","GO:0005886","GO:0032991"],"is_obsolete":false,"name":"alpha4-beta1 integrin-CD81 complex","synonyms":[{"name":"ITGA4-ITGB1-CD81 complex","type":"narrow"}],"termid":"GO:0070520"}


id: PBO:0040696
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"branched chain keto acid dehydrogenase E1 subunit beta","termid":"PBO:0040696"}


id: PBO:0109381
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"testis expressed transcript, Y-linked 12","termid":"PBO:0109381"}


id: PBO:0064736
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"peptidylprolyl isomerase A pseudogene 72","termid":"PBO:0064736"}


id: PBO:0052676
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"keratin 8 pseudogene 44","termid":"PBO:0052676"}


id: FYPO:0005443
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the occurrence of hydrolysis of peptide bonds within a protein is decreased. All proteolysis may be affected, or only cleavage of specific proteins, or even specific sites within specific proteins.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased protein modification during vegetative growth","termid":"FYPO:0000545"},{"relation_name":"is_a","term_name":"decreased proteolysis","termid":"FYPO:0006527"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0002494"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0002274"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0002494","FYPO:0005447","FYPO:0001985","FYPO:0000002","FYPO:0001320","FYPO:0002274"],"is_obsolete":false,"name":"decreased proteolysis during vegetative growth","synonyms":[{"name":"decreased peptidolysis during vegetative growth","type":"exact"},{"name":"decreased protein cleavage during vegetative growth","type":"related"},{"name":"decreased proteolysis during mitotic cell cycle","type":"related"},{"name":"reduced proteolysis during vegetative growth","type":"exact"}],"termid":"FYPO:0005443"}


id: PBO:0083141
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Dubious open reading frame; unlikely to encode a functional protein, based on available experimental and comparative sequence data; almost completely overlaps 3' end of ORF HOT1/YMR172W","termid":"PBO:0083141"}


id: GO:0042999
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that modulates the frequency, rate or extent of transport of Cystic Fibrosis Transmembrane conductance Regulator (CFTR) protein from the Golgi to the plasma membrane.","definition_xrefs":["GOC:jl"],"gene_count":0,"genotype_count":0,"name":"obsolete regulation of Golgi to plasma membrane CFTR protein transport (obsolete GO:0042999)","termid":"GO:0042999"}


id: GO:0070558
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A protein complex that consists of an alphaM-beta2 integrin complex bound to membrane protein CD63, a member of the tetraspan family.","definition_xrefs":["PMID:8871662"],"direct_ancestors":[{"relation_name":"is_a","term_name":"plasma membrane protein complex","termid":"GO:0098797"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0005886"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0032991","GO:0005886","GO:0005575"],"is_obsolete":false,"name":"alphaM-beta2 integrin-CD63 complex","synonyms":[{"name":"ITGAM-ITGB2-CD63 complex","type":"narrow"}],"termid":"GO:0070558"}


id: PBO:0029434
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-inviable_curved_septated_vegetative_cell","termid":"PBO:0029434"}


id: PBO:0061214
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nucleolar protein 6","termid":"PBO:0061214"}


id: GO:1990133
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A heterodimeric protein complex which adenylates two molecules of the sulfur carrier subunit of the molybdopterin (MPT) cofactor synthase using ATP as part of molybdopterin cofactor (Moco) biosynthesis. In E. coli the subunits are MoeB and MoaD; Moco biosynthesis and its constituent molecules are evolutionarily conserved.","definition_xrefs":["PMID:11713534","PMID:16669776","GOC:bhm"],"direct_ancestors":[{"relation_name":"is_a","term_name":"adenylyltransferase complex","termid":"GO:1902503"},{"relation_name":"part_of","term_name":"cytosol","termid":"GO:0005829"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"part_of","termid":"GO:0005829"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0005575","GO:0032991","GO:0005829","GO:0005737"],"is_obsolete":false,"name":"molybdopterin cofactor (Moco) biosynthesis adenylyltransferase complex","termid":"GO:1990133"}


id: PBO:0043800
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ciliogenesis and planar polarity effector complex subunit 2","termid":"PBO:0043800"}


id: PBO:0090685
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Golgi phosphoenolpyruvate transmembrane transporter Pet3","termid":"PBO:0090685"}


id: GO:0098923
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Cell-cell signaling from postsynapse to presynapse, across the synaptic cleft, mediated by an soluble gas ligand.","definition_xrefs":["GOC:dos"],"direct_ancestors":[{"relation_name":"is_a","term_name":"retrograde trans-synaptic signaling","termid":"GO:0098917"},{"relation_name":"is_a","term_name":"trans-synaptic signaling by soluble gas","termid":"GO:0099543"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"retrograde trans-synaptic signaling by soluble gas","termid":"GO:0098923"}


id: PATO:0015005
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"Slender and spirally coiled.","direct_ancestors":[{"relation_name":"has_part","term_name":"coiled","termid":"PATO:0000404"},{"relation_name":"has_part","term_name":"slender","termid":"PATO:0002212"},{"relation_name":"is_a","term_name":"shape","termid":"PATO:0000052"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tendrilous","synonyms":[{"name":"tendril-like","type":"related"},{"name":"tendril-shaped","type":"related"},{"name":"tendrilled","type":"broad"}],"termid":"PATO:0015005"}


id: FYPO:0005726
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell cycle checkpoint phenotype in which deactivation of the mitotic spindle assembly checkpoint does not occur. The mitotic spindle assembly checkpoint normally delays the metaphase/anaphase transition of a mitotic nuclear division until the spindle is correctly assembled and chromosomes are attached to the spindle.","definition_xrefs":["PomBase:mah","PomBase:vw","PMID:21664573","PMID:19592249"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal mitotic spindle assembly checkpoint","termid":"FYPO:0000168"},{"relation_name":"is_a","term_name":"abolished biological process","termid":"FYPO:0005448"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000298"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0000298","FYPO:0000002","FYPO:0000631","FYPO:0001320","FYPO:0005447","FYPO:0001985"],"is_obsolete":false,"name":"abolished deactivation of mitotic spindle assembly checkpoint","synonyms":[{"name":"abolished deactivation of mitotic cell cycle spindle assembly checkpoint","type":"exact"},{"name":"abolished mitotic spindle assembly checkpoint deactivation","type":"exact"},{"name":"abolished mitotic spindle assembly checkpoint silencing","type":"exact"},{"name":"deactivation of mitotic spindle assembly checkpoint abolished","type":"exact"}],"termid":"FYPO:0005726"}


id: PBO:0054175
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1548","termid":"PBO:0054175"}


id: GO:0090055
data:
  {"annotated_genes":["SJAG_02342","SJAG_02592"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[90572,106541],"is_not":false,"summary":null,"term":"GO:0090055"}]},"cv_name":"biological_process","definition":"Any process that increases the frequency, rate, or extent of heterochromatin formation at silent mating-type cassette.","definition_xrefs":["GOC:dph","GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of heterochromatin formation","termid":"GO:0031453"},{"relation_name":"is_a","term_name":"regulation of silent mating-type cassette heterochromatin formation","termid":"GO:0090054"},{"relation_name":"positively_regulates","term_name":"silent mating-type cassette heterochromatin formation","termid":"GO:0030466"}],"gene_count":2,"genes_by_uniquename":{"SJAG_02342":null,"SJAG_02592":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0006325"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"positively_regulates","termid":"GO:0006325"},{"rel_name":"regulates","termid":"GO:0044085"},{"rel_name":"regulates","termid":"GO:0010467"},{"rel_name":"positively_regulates","termid":"GO:0044085"}],"interesting_parent_ids":["GO:0010467","GO:0006325","GO:0008150","GO:0044085"],"is_obsolete":false,"name":"positive regulation of silent mating-type cassette heterochromatin formation","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"positive regulation of chromatin silencing at silent mating-type cassette","type":"exact"},{"name":"positive regulation of silent mating-type cassette heterochromatin assembly","type":"exact"}],"termid":"GO:0090055","terms_by_termid":{"GO:0090055":null}}


id: PBO:0041463
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"C10orf95 antisense RNA 1","termid":"PBO:0041463"}


id: PBO:0060411
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"N-alpha-acetyltransferase 38, NatC auxiliary subunit","termid":"PBO:0060411"}


id: PBO:0078888
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-Gln (anticodon CTG) 1-5","termid":"PBO:0078888"}


id: PBO:0048618
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"gypsy retrotransposon integrase 1","termid":"PBO:0048618"}


id: FYPO:0006346
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A physical cellular phenotype observed in the vegetative growth phase of the life cycle in which the mitotic spindle has two poles and can elongate during anaphase, but has decreased and non-uniform thickness along its length.","definition_xrefs":["PMID:12951601","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal bipolar mitotic spindle","termid":"FYPO:0001574"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0002399"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000120"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0000054"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0000002","FYPO:0005447","FYPO:0001985","FYPO:0000054","FYPO:0002399","FYPO:0000120"],"is_obsolete":false,"name":"bipolar mitotic spindle with decreased, irregular thickness","synonyms":[{"name":"bipolar mitotic spindle with decreased, irregular thickness during mitotic cell cycle","type":"exact"},{"name":"bipolar mitotic spindle with decreased, irregular thickness during vegetative growth","type":"exact"},{"name":"decreased, irregular bipolar mitotic spindle thickness","type":"exact"},{"name":"thin, discontinuous bipolar mitotic spindle","type":"related"}],"termid":"FYPO:0006346"}


id: GO:0100040
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any transcription from RNA polymerase II promoter process that negatively regulates invasive growth in response to glucose limitation.","definition_xrefs":["GOC:obol","GOC:cjm"],"gene_count":0,"genotype_count":0,"name":"obsolete negative regulation of invasive growth in response to glucose limitation by transcription from RNA polymerase II promoter (obsolete GO:0100040)","termid":"GO:0100040"}


id: PBO:0030434
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_tRNA_methyltransferase_activity","termid":"PBO:0030434"}


id: PR:Q9URX8
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A nuclear pore complex protein Nup155 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO02087","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nucleoporin C890.06 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC890.06","secondary_identifiers":["UniProtKB:Q9URX8"],"synonyms":[{"name":"Spom972h-NUP155","type":"exact"}],"termid":"PR:Q9URX8"}


id: SO:0001410
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A region which is the result of some arbitrary experimental procedure. The procedure may be carried out with biological material or inside a computer.","definition_xrefs":["SO:cb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"region","termid":"SO:0000001"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"experimental_feature","synonyms":[{"name":"analysis feature","type":"related"},{"name":"experimental output artefact","type":"exact"},{"name":"experimental_output_artefact","type":"exact"}],"termid":"SO:0001410"}


id: PBO:0039288
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ALG3 alpha-1,3- mannosyltransferase","termid":"PBO:0039288"}


id: PBO:0060150
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial translational release factor 1 like pseudogene 1","termid":"PBO:0060150"}


id: GO:0010876
data:
  {"annotated_genes":["SJAG_03050","SJAG_03710","SJAG_00576","SJAG_04370","SJAG_03609","SJAG_02581","SJAG_01407","SJAG_03690","SJAG_01225","SJAG_04041","SJAG_01722","SJAG_02736","SJAG_00018","SJAG_01906","SJAG_01229","SJAG_01095","SJAG_03774","SJAG_00589","SJAG_04049","SJAG_16459","SJAG_01180","SJAG_00230","SJAG_02943","SJAG_03741","SJAG_03721","SJAG_02763","SJAG_00261","SJAG_02980","SJAG_05209","SJAG_03851","SJAG_01945","SJAG_03746","SJAG_01329","SJAG_02323","SJAG_03338","SJAG_05268","SJAG_02114","SJAG_06440","SJAG_03416","SJAG_04059","SJAG_03718","SJAG_01537","SJAG_02897","SJAG_01731","SJAG_02957","SJAG_01470","SJAG_01590","SJAG_00587","SJAG_03162","SJAG_02375","SJAG_00669","SJAG_01116","SJAG_03172","SJAG_02132","SJAG_02516","SJAG_01305","SJAG_00405","SJAG_00355"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[67838],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0140331"},{"annotations":[90442,113669],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0035621"},{"annotations":[90622,108751],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0034203"},{"annotations":[60883,56969,62236,64403,93745],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0120009"},{"annotations":[93685,105728,93746,100231,102923,112426,94825,103713,104846,102023,87121,85461,103842,97463,96702],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0120010"},{"annotations":[102507],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0120011"},{"annotations":[97850,102508,97658],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0032366"},{"annotations":[85005,92908,110372,115012,90848,108255,107182],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0140042"},{"annotations":[99108,113103],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0140043"},{"annotations":[108256,87662,105931,110373,86263,115346],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0019915"},{"annotations":[60385],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0034204"},{"annotations":[86742,105714,108690,86740,86739,86741,98402,101259,94125,90623,96366,98522,86743,86745,86744,86746,95651,97465,86738],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0045332"},{"annotations":[64404,93747,103213,60884],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0015914"},{"annotations":[92823],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0017121"},{"annotations":[107520,112406,98794,104401,90446,105565],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0015918"}]},"cv_name":"biological_process","definition":"Any process in which a lipid is transported to, or maintained in, a specific location.","definition_xrefs":["GOC:dph","GOC:BHF","GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"macromolecule localization","termid":"GO:0033036"}],"gene_count":58,"genes_by_uniquename":{"SJAG_00018":null,"SJAG_00230":null,"SJAG_00261":null,"SJAG_00355":null,"SJAG_00405":null,"SJAG_00576":null,"SJAG_00587":null,"SJAG_00589":null,"SJAG_00669":null,"SJAG_01095":null,"SJAG_01116":null,"SJAG_01180":null,"SJAG_01225":null,"SJAG_01229":null,"SJAG_01305":null,"SJAG_01329":null,"SJAG_01407":null,"SJAG_01470":null,"SJAG_01537":null,"SJAG_01590":null,"SJAG_01722":null,"SJAG_01731":null,"SJAG_01906":null,"SJAG_01945":null,"SJAG_02114":null,"SJAG_02132":null,"SJAG_02323":null,"SJAG_02375":null,"SJAG_02516":null,"SJAG_02581":null,"SJAG_02736":null,"SJAG_02763":null,"SJAG_02897":null,"SJAG_02943":null,"SJAG_02957":null,"SJAG_02980":null,"SJAG_03050":null,"SJAG_03162":null,"SJAG_03172":null,"SJAG_03338":null,"SJAG_03416":null,"SJAG_03609":null,"SJAG_03690":null,"SJAG_03710":null,"SJAG_03718":null,"SJAG_03721":null,"SJAG_03741":null,"SJAG_03746":null,"SJAG_03774":null,"SJAG_03851":null,"SJAG_04041":null,"SJAG_04049":null,"SJAG_04059":null,"SJAG_04370":null,"SJAG_05209":null,"SJAG_05268":null,"SJAG_06440":null,"SJAG_16459":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0051179","GO:0008150"],"is_obsolete":false,"name":"lipid localization","references_by_uniquename":{"GO_REF:0000107":null,"GO_REF:0000108":null,"PMID:26774782":null},"synonyms":[{"name":"lipid localisation","type":"exact"}],"termid":"GO:0010876","terms_by_termid":{"GO:0015914":null,"GO:0015918":null,"GO:0017121":null,"GO:0019915":null,"GO:0032366":null,"GO:0034203":null,"GO:0034204":null,"GO:0035621":null,"GO:0045332":null,"GO:0120009":null,"GO:0120010":null,"GO:0120011":null,"GO:0140042":null,"GO:0140043":null,"GO:0140331":null}}


id: PBO:0041016
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"BPI fold containing family A member 3","termid":"PBO:0041016"}


id: GO:0015832
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. (Was not defined before being made obsolete).","definition_xrefs":["GOC:go_curators"],"gene_count":0,"genotype_count":0,"name":"obsolete holin (obsolete GO:0015832)","synonyms":[{"name":"holin","type":"exact"}],"termid":"GO:0015832"}


id: PBO:0111535
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"amino acid transmembrane transporter Nrg1","termid":"PBO:0111535"}


id: GO:1904821
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The disaggregation of a chloroplast into its constituent components.","definition_xrefs":["GO_REF:0000079","GOC:TermGenie","PMID:26494759"],"direct_ancestors":[{"relation_name":"is_a","term_name":"chloroplast organization","termid":"GO:0009658"},{"relation_name":"is_a","term_name":"organelle disassembly","termid":"GO:1903008"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"chloroplast disassembly","synonyms":[{"name":"chloroplast degradation","type":"related"}],"termid":"GO:1904821"}


id: GO:0045171
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A direct connection between the cytoplasm of two cells that is formed following the completion of cleavage furrow ingression during cell division. They are usually present only briefly prior to completion of cytokinesis. However, in some cases, such as the bridges between germ cells during their development, they become stabilised.","definition_xrefs":["PMID:9635420"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular anatomical entity","termid":"GO:0110165"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"intercellular bridge","termid":"GO:0045171"}


id: FYPO:0002609
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which histone H2A phosphorylation occurs to a lower extent than normal at centromeric outer repeat regions. All histone H2A phosphorylation may be affected, or phosphorylation of specific sites on histone H2A may be decreased.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased histone H2A phosphorylation during vegetative growth","termid":"FYPO:0002598"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0002494"},{"rel_name":"is_a","termid":"FYPO:0002274"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0002494","FYPO:0002274","FYPO:0005447","FYPO:0001985","FYPO:0000002"],"is_obsolete":false,"name":"decreased histone H2A phosphorylation at centromere outer repeat during vegetative growth","synonyms":[{"name":"decreased histone H2A phosphorylation at centromere otr during vegetative growth","type":"exact"},{"name":"decreased histone H2A phosphorylation at centromere outer repeat during mitotic cell cycle","type":"related"},{"name":"decreased histone H2A phosphorylation at centromeric outer repeat region during vegetative growth","type":"exact"},{"name":"decreased histone H2A phosphorylation at pericentric region during vegetative growth","type":"related"},{"name":"decreased histone H2A phosphorylation at pericentromeric region during vegetative growth","type":"related"},{"name":"reduced histone H2A phosphorylation at centromere outer repeat during vegetative growth","type":"exact"}],"termid":"FYPO:0002609"}


id: PBO:0085828
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein of unknown function; GFP-fusion protein localizes to the mitochondria; null mutant is viable and displays reduced frequency of mitochondrial genome loss","termid":"PBO:0085828"}


id: PBO:0064863
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protein phosphatase 1 regulatory subunit 18","termid":"PBO:0064863"}


id: GO:0015272
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Enables the transmembrane transfer of a potassium ion by an inwardly-rectifying voltage-gated channel, where the inward rectification is due to a voltage-dependent block of the channel pore by ATP. An inwardly rectifying current-voltage relation is one where at any given driving force the inward flow of K+ ions exceeds the outward flow for the opposite driving force.","definition_xrefs":["GOC:cb","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"inward rectifier potassium channel activity","termid":"GO:0005242"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0022857","GO:0005215"],"is_obsolete":false,"name":"ATP-activated inward rectifier potassium channel activity","secondary_identifiers":["Reactome:R-HSA-5683209"],"termid":"GO:0015272"}


id: GO:0080170
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which hydrogen peroxide is transported across a membrane.","definition_xrefs":["GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"transmembrane transport","termid":"GO:0055085"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0055085"}],"interesting_parent_ids":["GO:0008150","GO:0006810","GO:0051179","GO:0055085"],"is_obsolete":false,"name":"hydrogen peroxide transmembrane transport","synonyms":[{"name":"hydrogen peroxide membrane transport","type":"exact"}],"termid":"GO:0080170"}


id: PBO:0040435
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ATPase phospholipid transporting 8A2","termid":"PBO:0040435"}


id: PBO:0082464
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Calcium and manganese transporter with higher affinity for Ca2+; involved in Ca2+ and Mn2+ homeostasis; localizes to the cis- and medial-Golgi apparatus; GFP-fusion localizes to the vacuole; required for the Mn2+-dependent function of glycosylation enzymes; TMEM165, a human ortholog linked to Congenital Disorders of Glycosylation, functionally complements the null allele; expression pattern and physical interactions suggest a possible role in ribosome biogenesis; expression regulated by Gcr1p","termid":"PBO:0082464"}


id: GO:1901700
data:
  {"annotated_genes":["SJAG_01216","SJAG_04823","SJAG_03081","SJAG_01457","SJAG_01162","SJAG_01754","SJAG_00141","SJAG_00574","SJAG_04399","SJAG_03032","SJAG_04026","SJAG_00668","SJAG_00472","SJAG_01254","SJAG_03303","SJAG_05256","SJAG_04788","SJAG_02960","SJAG_01858","SJAG_04312","SJAG_01699","SJAG_05181","SJAG_02515","SJAG_01199","SJAG_01734","SJAG_04632","SJAG_02010","SJAG_04953","SJAG_06611","SJAG_03653","SJAG_04403","SJAG_02444"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[105210,103029,102081,105722,102673,90426,98030,111702,112744],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0010619"},{"annotations":[108925],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0110095"},{"annotations":[105027,113525,114422,91395,101219,96173],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0061692"},{"annotations":[101222],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0140041"},{"annotations":[109698],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0071244"},{"annotations":[101400],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0036245"},{"annotations":[96174],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0034614"},{"annotations":[91739,99666],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0046294"},{"annotations":[85217,106336,89331,64580,58061,67613,95458,96334,85634,106291],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0019430"},{"annotations":[89750,91915],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0097466"}]},"cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an oxygen-containing compound stimulus.","definition_xrefs":["GOC:pr","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to chemical","termid":"GO:0042221"}],"gene_count":32,"genes_by_uniquename":{"SJAG_00141":null,"SJAG_00472":null,"SJAG_00574":null,"SJAG_00668":null,"SJAG_01162":null,"SJAG_01199":null,"SJAG_01216":null,"SJAG_01254":null,"SJAG_01457":null,"SJAG_01699":null,"SJAG_01734":null,"SJAG_01754":null,"SJAG_01858":null,"SJAG_02010":null,"SJAG_02444":null,"SJAG_02515":null,"SJAG_02960":null,"SJAG_03032":null,"SJAG_03081":null,"SJAG_03303":null,"SJAG_03653":null,"SJAG_04026":null,"SJAG_04312":null,"SJAG_04399":null,"SJAG_04403":null,"SJAG_04632":null,"SJAG_04788":null,"SJAG_04823":null,"SJAG_04953":null,"SJAG_05181":null,"SJAG_05256":null,"SJAG_06611":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"response to oxygen-containing compound","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000107":null,"GO_REF:0000108":null},"synonyms":[{"name":"response to oxygen molecular entity","type":"exact"}],"termid":"GO:1901700","terms_by_termid":{"GO:0010619":null,"GO:0019430":null,"GO:0034614":null,"GO:0036245":null,"GO:0046294":null,"GO:0061692":null,"GO:0071244":null,"GO:0097466":null,"GO:0110095":null,"GO:0140041":null}}


id: PBO:0013455
data:
  {"annotation_feature_type":"gene","cv_name":"misc","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"trichostatin A suppresses accumulation of septated cells, but does not restore wild-type checkpoint function, in rad1delta mutant","termid":"PBO:0013455"}


id: GO:0047333
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: ATP + dihydrostreptomycin 6-phosphate = ADP + dihydrostreptomycin 3'alpha,6-bisphosphate + 2 H+.","definition_xrefs":["EC:2.7.1.88","RHEA:16281"],"direct_ancestors":[{"relation_name":"is_a","term_name":"aminoglycoside phosphotransferase activity","termid":"GO:0034071"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016301"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016740"}],"interesting_parent_ids":["GO:0003824","GO:0016740","GO:0016301","GO:0003674"],"is_obsolete":false,"name":"dihydrostreptomycin-6-phosphate 3'-alpha-kinase activity","secondary_identifiers":["KEGG_REACTION:R03395","MetaCyc:2.7.1.88-RXN"],"synonyms":[{"name":"ATP:dihydrostreptomycin-6-P 3'alpha-phosphotransferase activity","type":"related"},{"name":"ATP:dihydrostreptomycin-6-phosphate 3'alpha-phosphotransferase activity","type":"related"},{"name":"dihydrostreptomycin 6-phosphate kinase (phosphorylating)","type":"related"},{"name":"dihydrostreptomycin-6-phosphate 3'alpha-kinase activity","type":"related"}],"termid":"GO:0047333"}


id: internal:consider
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"consider","termid":"internal:consider"}


id: GO:0043495
data:
  {"annotated_genes":["SJAG_02215","SJAG_01738","SJAG_04417","SJAG_04413","SJAG_03264","SJAG_04077","SJAG_00185","SJAG_03416","SJAG_04991","SJAG_02699","SJAG_03596","SJAG_02874","SJAG_03449","SJAG_01437","SJAG_00397","SJAG_00368","SJAG_01143","SJAG_04763","SJAG_03710","SJAG_02398","SJAG_01564","SJAG_01456","SJAG_03464","SJAG_00700","SJAG_04370","SJAG_04930","SJAG_04558","SJAG_03851","SJAG_02737","SJAG_01263","SJAG_00029","SJAG_01178","SJAG_05196","SJAG_03564","SJAG_01745","SJAG_01305","SJAG_00268","SJAG_04315","SJAG_03200","SJAG_05226","SJAG_03170","SJAG_03089","SJAG_03435","SJAG_00053","SJAG_01196","SJAG_01258","SJAG_03673","SJAG_04479"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[86637,90830,91632,91693,93653,97974,98691,99684,100560,101312,102094,102304,102875,103081,104853,105629,107060,107198,109396,110233,113209,114607,114820,115083],"is_not":false,"summary":null,"term":"GO:0043495"},{"annotations":[87552],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0140449"},{"annotations":[99153,102384,108503,110146,108963,88791,108068,113122,113207,98926,102780,98609,102779],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0106006"},{"annotations":[95586],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0140506"},{"annotations":[115644,87556,85311],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0062239"},{"annotations":[85281],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0140580"},{"annotations":[87125,103846,102027,103717],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0140474"},{"annotations":[102781],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0140443"},{"annotations":[109038,99008,86362],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0106166"},{"annotations":[113710,102136],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0140473"}]},"cv_name":"molecular_function","definition":"The binding activity of a molecule that brings together a protein or a protein complex with a membrane, or bringing together two membranes, either via membrane lipid binding or by interacting with a membrane protein, to establish or maintain the localization of the protein, protein complex or organelle.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein-macromolecule adaptor activity","termid":"GO:0030674"}],"gene_count":48,"genes_by_uniquename":{"SJAG_00029":null,"SJAG_00053":null,"SJAG_00185":null,"SJAG_00268":null,"SJAG_00368":null,"SJAG_00397":null,"SJAG_00700":null,"SJAG_01143":null,"SJAG_01178":null,"SJAG_01196":null,"SJAG_01258":null,"SJAG_01263":null,"SJAG_01305":null,"SJAG_01437":null,"SJAG_01456":null,"SJAG_01564":null,"SJAG_01738":null,"SJAG_01745":null,"SJAG_02215":null,"SJAG_02398":null,"SJAG_02699":null,"SJAG_02737":null,"SJAG_02874":null,"SJAG_03089":null,"SJAG_03170":null,"SJAG_03200":null,"SJAG_03264":null,"SJAG_03416":null,"SJAG_03435":null,"SJAG_03449":null,"SJAG_03464":null,"SJAG_03564":null,"SJAG_03596":null,"SJAG_03673":null,"SJAG_03710":null,"SJAG_03851":null,"SJAG_04077":null,"SJAG_04315":null,"SJAG_04370":null,"SJAG_04413":null,"SJAG_04417":null,"SJAG_04479":null,"SJAG_04558":null,"SJAG_04763":null,"SJAG_04930":null,"SJAG_04991":null,"SJAG_05196":null,"SJAG_05226":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0030674"},{"rel_name":"is_a","termid":"GO:0060090"}],"interesting_parent_ids":["GO:0003674","GO:0030674","GO:0060090"],"is_obsolete":false,"name":"protein-membrane adaptor activity","references_by_uniquename":{"GO_REF:0000107":null,"PMID:24184107":null},"synonyms":[{"name":"anchoring","type":"related"},{"name":"membrane-membrane adaptor activity","type":"narrow"},{"name":"protein membrane adaptor","type":"exact"},{"name":"protein membrane adaptor activity","type":"exact"},{"name":"protein membrane anchor","type":"related"}],"termid":"GO:0043495","terms_by_termid":{"GO:0043495":null,"GO:0062239":null,"GO:0106006":null,"GO:0106166":null,"GO:0140443":null,"GO:0140449":null,"GO:0140473":null,"GO:0140474":null,"GO:0140506":null,"GO:0140580":null}}


id: GO:0047848
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: ATP + dephospho-[[hydroxymethylglutaryl-CoA reductase (NADPH)] kinase] = ADP + [[hydroxymethylglutaryl-CoA reductase (NADPH)] kinase].","definition_xrefs":["EC:2.7.11.3","MetaCyc:DEPHOSPHO-REDUCTASE-KINASE-KINASE-RXN"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein kinase activity","termid":"GO:0004672"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016301"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0140096"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0004672"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016301","GO:0003674","GO:0140096","GO:0016740","GO:0004672","GO:0003824"],"is_obsolete":false,"name":"dephospho-[reductase kinase] kinase activity","synonyms":[{"name":"AMP-activated kinase activity","type":"related"},{"name":"AMP-activated protein kinase kinase activity","type":"related"},{"name":"ATP:dephospho-{hydroxymethylglutaryl-CoA reductase (NADPH)kinase} phosphotransferase activity","type":"related"},{"name":"STK30","type":"related"},{"name":"dephospho-reductase kinase kinase activity","type":"related"},{"name":"hydroxymethylglutaryl coenzyme A reductase kinase kinase (phosphorylating) activity","type":"related"},{"name":"hydroxymethylglutaryl coenzyme A reductase kinase kinase activity","type":"related"},{"name":"reductase kinase activity","type":"broad"},{"name":"reductase kinase kinase activity","type":"related"}],"termid":"GO:0047848"}


id: GO:0031461
data:
  {"annotated_genes":["SJAG_03454","SJAG_03350","SJAG_04520","SJAG_04853","SJAG_02119","SJAG_04574","SJAG_03728","SJAG_03219","SJAG_01022","SJAG_02162","SJAG_04661","SJAG_04335","SJAG_02651","SJAG_04180","SJAG_00439","SJAG_00666","SJAG_02822","SJAG_03417","SJAG_03561","SJAG_02186","SJAG_04573","SJAG_00146","SJAG_01956","SJAG_02591","SJAG_00192","SJAG_00615","SJAG_03575","SJAG_05236","SJAG_05329","SJAG_03130","SJAG_03351","SJAG_04142","SJAG_02044","SJAG_01573","SJAG_03680","SJAG_01480","SJAG_03651","SJAG_03037","SJAG_00756","SJAG_04971","SJAG_00071","SJAG_04087","SJAG_05297","SJAG_00341","SJAG_04540","SJAG_01801","SJAG_02837","SJAG_03858","SJAG_01540","SJAG_03809"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[85478],"is_not":false,"summary":null,"term":"GO:0031461"},{"annotations":[96304,63098,86566,98469,102358,87946,109320,91363,78115,95783,95778,92798,108409,89954,103790,79242,96973,98014,78826],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0005680"},{"annotations":[90544,92921,114943,110178,113838,106677],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0043494"},{"annotations":[90717],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0031463"},{"annotations":[87127,92879,92922,101518,84607,107450,87078],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0080008"},{"annotations":[107338],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0031464"},{"annotations":[78393,95555,93687,107403],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0035361"},{"annotations":[105276,90547,101045,93967,106515,86824,98292],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0043224"},{"annotations":[111973,86825,94649,84809,93968,101190,91745,99053],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0019005"}]},"cv_name":"cellular_component","definition":"Any ubiquitin ligase complex in which the catalytic core consists of a member of the cullin family and a RING domain protein; the core is associated with one or more additional proteins that confer substrate specificity.","definition_xrefs":["PMID:15571813","PMID:15688063"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ubiquitin ligase complex","termid":"GO:0000151"}],"gene_count":50,"genes_by_uniquename":{"SJAG_00071":null,"SJAG_00146":null,"SJAG_00192":null,"SJAG_00341":null,"SJAG_00439":null,"SJAG_00615":null,"SJAG_00666":null,"SJAG_00756":null,"SJAG_01022":null,"SJAG_01480":null,"SJAG_01540":null,"SJAG_01573":null,"SJAG_01801":null,"SJAG_01956":null,"SJAG_02044":null,"SJAG_02119":null,"SJAG_02162":null,"SJAG_02186":null,"SJAG_02591":null,"SJAG_02651":null,"SJAG_02822":null,"SJAG_02837":null,"SJAG_03037":null,"SJAG_03130":null,"SJAG_03219":null,"SJAG_03350":null,"SJAG_03351":null,"SJAG_03417":null,"SJAG_03454":null,"SJAG_03561":null,"SJAG_03575":null,"SJAG_03651":null,"SJAG_03680":null,"SJAG_03728":null,"SJAG_03809":null,"SJAG_03858":null,"SJAG_04087":null,"SJAG_04142":null,"SJAG_04180":null,"SJAG_04335":null,"SJAG_04520":null,"SJAG_04540":null,"SJAG_04573":null,"SJAG_04574":null,"SJAG_04661":null,"SJAG_04853":null,"SJAG_04971":null,"SJAG_05236":null,"SJAG_05297":null,"SJAG_05329":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0032991","GO:0005575"],"is_obsolete":false,"name":"cullin-RING ubiquitin ligase complex","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null,"GO_REF:0000117":null},"synonyms":[{"name":"CRL complex","type":"exact"},{"name":"cullin complex","type":"exact"},{"name":"cullin-RING ligase","type":"related"}],"termid":"GO:0031461","terms_by_termid":{"GO:0005680":null,"GO:0019005":null,"GO:0031461":null,"GO:0031463":null,"GO:0031464":null,"GO:0035361":null,"GO:0043224":null,"GO:0043494":null,"GO:0080008":null}}


id: GO:2000130
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of octopamine signaling pathway.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of octopamine or tyramine signaling pathway","termid":"GO:2000127"},{"relation_name":"is_a","term_name":"regulation of octopamine signaling pathway","termid":"GO:2000128"},{"relation_name":"positively_regulates","term_name":"octopamine signaling pathway","termid":"GO:0071927"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"positively_regulates","termid":"GO:0023052"},{"rel_name":"regulates","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"positive regulation of octopamine signaling pathway","synonyms":[{"name":"positive regulation of octopamine signalling pathway","type":"exact"}],"termid":"GO:2000130"}


id: PBO:0054784
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2197","termid":"PBO:0054784"}


id: PR:Q10483
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A UBX domain-containing protein 1 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized protein C17C9.11c (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC17C9.11c","secondary_identifiers":["UniProtKB:Q10483"],"synonyms":[{"name":"Spom972h-UBXN1","type":"exact"}],"termid":"PR:Q10483"}


id: GO:1900987
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The chemical reactions and pathways resulting in the breakdown of ajmaline.","definition_xrefs":["GOC:TermGenie","GOC:yaf"],"gene_count":0,"genotype_count":0,"name":"obsolete ajmaline catabolic process (obsolete GO:1900987)","synonyms":[{"name":"ajmaline breakdown","type":"exact"},{"name":"ajmaline catabolism","type":"exact"},{"name":"ajmaline degradation","type":"exact"}],"termid":"GO:1900987"}


id: PBO:0043662
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"coenzyme Q7, hydroxylase","termid":"PBO:0043662"}


id: PBO:0069543
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 813, pseudogene","termid":"PBO:0069543"}


id: GO:0031923
data:
  {"annotated_genes":["SJAG_02152","SJAG_03652","SJAG_03808","SJAG_02962"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[113627,114888,86371,86372],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1903092"}]},"cv_name":"biological_process","definition":"The directed movement of pyridoxine into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Pyridoxine, 2-methyl-3-hydroxy-4,5-bis(hydroxymethyl)pyridine, is one of the vitamin B6 compounds. Pyridoxal, pyridoxamine and pyridoxine are collectively known as vitamin B6, and are efficiently converted to the biologically active form of vitamin B6, pyridoxal phosphate.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"organic hydroxy compound transport","termid":"GO:0015850"},{"relation_name":"is_a","term_name":"vitamin B6 transport","termid":"GO:0031919"}],"gene_count":4,"genes_by_uniquename":{"SJAG_02152":null,"SJAG_02962":null,"SJAG_03652":null,"SJAG_03808":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006810","GO:0008150","GO:0051179"],"is_obsolete":false,"name":"pyridoxine transport","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0031923","terms_by_termid":{"GO:1903092":null}}


id: PR:Q10244
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A peroxisomal membrane protein 2 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx","OMA:SCHPO00943"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized protein C4G9.14 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC4G9.14","secondary_identifiers":["UniProtKB:Q10244"],"synonyms":[{"name":"Spom972h-PXMP2","type":"exact"}],"termid":"PR:Q10244"}


id: PBO:0066260
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RBMX like 3","termid":"PBO:0066260"}


id: GO:0070402
data:
  {"annotated_genes":["SJAG_03476","SJAG_02488"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[110880,110971],"is_not":false,"summary":null,"term":"GO:0070402"}]},"cv_name":"molecular_function","definition":"Binding to the reduced form, NADPH, of nicotinamide-adenine dinucleotide phosphate, a coenzyme involved in many redox and biosynthetic reactions.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"anion binding","termid":"GO:0043168"},{"relation_name":"is_a","term_name":"NADP binding","termid":"GO:0050661"}],"gene_count":2,"genes_by_uniquename":{"SJAG_02488":null,"SJAG_03476":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005488"}],"interesting_parent_ids":["GO:0003674","GO:0005488"],"is_obsolete":false,"name":"NADPH binding","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"NADP (reduced) binding","type":"exact"},{"name":"reduced NADP binding","type":"exact"},{"name":"reduced nicotinamide adenine dinucleotide phosphate binding","type":"exact"}],"termid":"GO:0070402","terms_by_termid":{"GO:0070402":null}}


id: GO:0006088
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. (Was not defined before being made obsolete).","definition_xrefs":["GOC:ai"],"gene_count":0,"genotype_count":0,"name":"obsolete acetate to acetyl-CoA (obsolete GO:0006088)","synonyms":[{"name":"acetate to acetyl-CoA","type":"exact"}],"termid":"GO:0006088"}


id: FYPO:0001771
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which the observed rate of a tRNA methyltransferase activity is abnormal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal catalytic activity","termid":"FYPO:0000661"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000654"},{"rel_name":"is_a","termid":"FYPO:0000707"},{"rel_name":"is_a","termid":"FYPO:0000661"}],"interesting_parent_ids":["FYPO:0000661","FYPO:0000654","FYPO:0001985","FYPO:0000707","FYPO:0000652"],"is_obsolete":false,"name":"abnormal tRNA methyltransferase activity","termid":"FYPO:0001771"}


id: GO:0050680
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the rate or extent of epithelial cell proliferation.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of cell population proliferation","termid":"GO:0008285"},{"relation_name":"is_a","term_name":"regulation of epithelial cell proliferation","termid":"GO:0050678"},{"relation_name":"negatively_regulates","term_name":"epithelial cell proliferation","termid":"GO:0050673"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of epithelial cell proliferation","synonyms":[{"name":"down regulation of epithelial cell proliferation","type":"exact"},{"name":"down-regulation of epithelial cell proliferation","type":"exact"},{"name":"downregulation of epithelial cell proliferation","type":"exact"},{"name":"inhibition of epithelial cell proliferation","type":"narrow"}],"termid":"GO:0050680"}


id: PBO:0086589
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Putative protein of unknown function; exhibits a two-hybrid interaction with Yhr151cp in a large-scale analysis","termid":"PBO:0086589"}


id: PBO:0065596
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"prothymosin alpha pseudogene 12","termid":"PBO:0065596"}


id: GO:0002127
data:
  {"annotated_genes":["SJAG_02099","SJAG_05249"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[84514,90134],"is_not":false,"summary":null,"term":"GO:0002127"}]},"cv_name":"biological_process","definition":"The process in which the base of cytosine at position 34 in the anticodon of a tRNA is post-transcriptionally methylated at the C5 position.","definition_xrefs":["ISBN:155581073X","GOC:hjd"],"direct_ancestors":[{"relation_name":"is_a","term_name":"tRNA wobble cytosine modification","termid":"GO:0002101"},{"relation_name":"is_a","term_name":"tRNA C5-cytosine methylation","termid":"GO:0002946"}],"gene_count":2,"genes_by_uniquename":{"SJAG_02099":null,"SJAG_05249":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006399"},{"rel_name":"part_of","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006399","GO:0010467","GO:0008150"],"is_obsolete":false,"name":"tRNA wobble base cytosine methylation","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"wobble position m5C biosynthesis","type":"exact"}],"termid":"GO:0002127","terms_by_termid":{"GO:0002127":null}}


id: GO:1903854
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of stress response to copper ion.","definition_xrefs":["GOC:TermGenie","GO_REF:0000058","PMID:23437011","GOC:kmv"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of response to stimulus","termid":"GO:0048585"},{"relation_name":"is_a","term_name":"regulation of stress response to copper ion","termid":"GO:1903853"},{"relation_name":"negatively_regulates","term_name":"stress response to copper ion","termid":"GO:1990169"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of stress response to copper ion","synonyms":[{"name":"down regulation of response to copper ion stress","type":"exact"},{"name":"down regulation of response to copper toxicity","type":"related"},{"name":"down regulation of stress response to copper ion","type":"exact"},{"name":"down-regulation of response to copper ion stress","type":"exact"},{"name":"down-regulation of response to copper toxicity","type":"related"},{"name":"down-regulation of stress response to copper ion","type":"exact"},{"name":"downregulation of response to copper ion stress","type":"exact"},{"name":"downregulation of response to copper toxicity","type":"related"},{"name":"downregulation of stress response to copper ion","type":"exact"},{"name":"inhibition of response to copper ion stress","type":"narrow"},{"name":"inhibition of response to copper toxicity","type":"related"},{"name":"inhibition of stress response to copper ion","type":"narrow"},{"name":"negative regulation of response to copper ion stress","type":"exact"},{"name":"negative regulation of response to copper toxicity","type":"related"}],"termid":"GO:1903854"}


id: PBO:0087566
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Subunit of succinate dehydrogenase and of TIM22 translocase; functions as cytochrome b subunit of succinate dehydrogenase, which couples oxidation of succinate to transfer of electrons to ubiquinone as part of the TCA cycle and the mitochondrial respiratory chain; also required for mitochondrial inner membrane protein import as part of the TIM22 complex; SDH3 has a paralog, SHH3, that arose from the whole genome duplication","termid":"PBO:0087566"}


id: SO:0002126
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A variable gene that rearranges at the DNA level and codes the variable region of the variable domain of an Immunoglobulin chain.","definition_xrefs":["IGMT:http://www.imgt.org/IMGTScientificChart/SequenceDescription/Keywords.php","GENCODE:http://www.gencodegenes.org/gencode_biotypes.html"],"direct_ancestors":[{"relation_name":"is_a","term_name":"immunoglobulin_gene","termid":"SO:0002122"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"IG_V_gene","synonyms":[{"name":"IGV_gene","type":"exact"},{"name":"IG_variable_gene","type":"exact"},{"name":"Immunoglobulin_variable_gene","type":"exact"}],"termid":"SO:0002126"}


id: PBO:0005714
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"60S acidic ribosomal protein Rpp0 (predicted)","termid":"PBO:0005714"}


id: PBO:0080911
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein theta","termid":"PBO:0080911"}


id: PBO:0091191
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-Val","termid":"PBO:0091191"}


id: PBO:0008885
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase family or domain","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mating-type m-specific polypeptide matMc","termid":"PBO:0008885"}


id: PBO:0055508
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2942","termid":"PBO:0055508"}


id: PBO:0052804
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"keratin 71","termid":"PBO:0052804"}


id: PATO:0000030
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0000030 enzyme composition (obsolete PATO:0000030)","termid":"PATO:0000030"}


id: PBO:0077521
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transmembrane protein 236","termid":"PBO:0077521"}


id: PBO:0086811
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Putative protein of unknown function; YJL043W is a non-essential gene","termid":"PBO:0086811"}


id: GO:0141064
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process that contributes to the onset of de novo transcription from the zygotic genome as part of the maternal-to-zygote transition in gene expression. The zygote overcomes the silencing that has been established. The cause of this silencing could be due to several factors: chromatin modifications leading to repression, or lack of adequate transcription machinery.","definition_xrefs":["PMID:19204068","PMID:20808952"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of gene expression","termid":"GO:0010628"},{"relation_name":"part_of","term_name":"maternal-to-zygotic transition of gene expression","termid":"GO:0160021"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"positively_regulates","termid":"GO:0010467"},{"rel_name":"regulates","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0010467","GO:0008150"],"is_obsolete":false,"name":"zygotic genome activation","synonyms":[{"name":"ZGA","type":"broad"}],"termid":"GO:0141064"}


id: PBO:0048562
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"golgi associated olfactory signaling regulator","termid":"PBO:0048562"}


id: MOD:00204
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-leucine residue to D-leucine.","definition_xrefs":["RESID:AA0197","PubMed:12135762","PubMed:1358533","PubMed:1548227","ChEBI:30005","PubMed:10461743"],"direct_ancestors":[{"relation_name":"is_a","term_name":"residues isobaric at 113.084064 Da","termid":"MOD:00306"},{"relation_name":"is_a","term_name":"stereoisomerized residue","termid":"MOD:00664"},{"relation_name":"is_a","term_name":"modified L-leucine residue","termid":"MOD:00911"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"D-leucine","synonyms":[{"name":"(2R)-2-amino-4-methylpentanoic acid","type":"exact"},{"name":"D-Leu","type":"exact"},{"name":"D-leucine","type":"exact"},{"name":"MOD_RES D-leucine","type":"exact"},{"name":"alpha-aminoisocaproic acid","type":"exact"}],"termid":"MOD:00204"}


id: FYPO:0007946
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which the occurrence of ubiquitination of one or more specific proteins, or of specific protein sites, is decreased.","definition_xrefs":["PomBase:val"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal protein ubiquitination","termid":"FYPO:0006977"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0002494"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0002274"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0002274","FYPO:0005447","FYPO:0001985","FYPO:0002494"],"is_obsolete":false,"name":"decreased protein ubiquitination","termid":"FYPO:0007946"}


id: GO:0044666
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A protein complex that can methylate lysine-4 of histone H3, and which contains either of the protein subunits MLL3 or MLL4 in mammals, or equivalent in other species.","definition_xrefs":["GOC:sart","PMID:21875999"],"direct_ancestors":[{"relation_name":"is_a","term_name":"histone methyltransferase complex","termid":"GO:0035097"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005654"},{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005634"}],"interesting_parent_ids":["GO:0005654","GO:0005634","GO:0005575","GO:0032991"],"is_obsolete":false,"name":"MLL3/4 complex","synonyms":[{"name":"Trr/COMPASS-like complex","type":"exact"}],"termid":"GO:0044666"}


id: GO:0045060
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process of elimination of immature T cells in the thymus which react strongly with self-antigens.","definition_xrefs":["PMID:12414722","ISBN:0781735149"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative T cell selection","termid":"GO:0043383"},{"relation_name":"is_a","term_name":"thymic T cell selection","termid":"GO:0045061"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative thymic T cell selection","synonyms":[{"name":"negative thymic T lymphocyte selection","type":"exact"},{"name":"negative thymic T-cell selection","type":"exact"},{"name":"negative thymic T-lymphocyte selection","type":"exact"}],"termid":"GO:0045060"}


id: PBO:0000990
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"U5 snRNP complex subunit Brr2 (predicted)","termid":"PBO:0000990"}


id: FYPO:0003657
data:
  {"alleles_by_uniquename":{"SJAG_01745:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_01745","name":"lem2delta","uniquename":"SJAG_01745:allele-1"}},"annotation_feature_type":"genotype","cv_annotations":{"single_locus_phenotype":[{"annotations":[115653],"is_not":false,"summary":null,"term":"FYPO:0003657"}]},"cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which a protein that is not normally found in the endoplasmic reticulum is observed there.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein mislocalized to cytoplasm during vegetative growth","termid":"FYPO:0000783"},{"relation_name":"is_a","term_name":"abnormal protein localization to endoplasmic reticulum during vegetative growth","termid":"FYPO:0003777"},{"relation_name":"is_a","term_name":"protein mislocalized to endoplasmic reticulum","termid":"FYPO:0006590"}],"gene_count":1,"genes_by_uniquename":{"SJAG_01050":null,"SJAG_01745":null},"genotype_count":1,"genotypes_by_uniquename":{"lem2delta":{"display_name":"lem2delta","display_uniquename":"lem2delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01745:allele-1","expression":"Null"}]}]}},"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"output_of","termid":"FYPO:0000138"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000002","FYPO:0000138","FYPO:0005447","FYPO:0001320"],"is_obsolete":false,"name":"protein mislocalized to endoplasmic reticulum during vegetative growth","references_by_uniquename":{"PMID:32109380":null},"single_locus_annotated_genes":["SJAG_01745"],"single_locus_genotype_uniquenames":["lem2delta"],"synonyms":[{"name":"ectopic protein localization to endoplasmic reticulum during vegetative growth","type":"exact"},{"name":"protein mislocalised to endoplasmic reticulum during vegetative growth","type":"exact"},{"name":"protein mislocalized to ER during vegetative growth","type":"exact"},{"name":"protein mislocalized to endoplasmic reticulum during mitotic cell cycle","type":"related"}],"termid":"FYPO:0003657","terms_by_termid":{"FYECO:0000137":null,"FYPO:0003657":null,"FYPO_EXT:0000001":null}}


id: PBO:0066038
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RAN pseudogene 7","termid":"PBO:0066038"}


id: GO:0097705
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any response to pulsatile fluid shear stress that occurs in a vascular endothelial cell.","definition_xrefs":["GOC:BHF_miRNA","GOC:BHF","PMID:21768538","GOC:bc"],"direct_ancestors":[{"relation_name":"is_a","term_name":"vascular endothelial cell response to fluid shear stress","termid":"GO:0097699"},{"relation_name":"is_a","term_name":"cellular response to pulsatile fluid shear stress","termid":"GO:0097703"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"vascular endothelial cell response to pulsatile fluid shear stress","synonyms":[{"name":"blood vessel endothelial cell response to pulsatile fluid shear stress","type":"exact"}],"termid":"GO:0097705"}


id: FYPO:0005194
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the occurrence of protein degradation is decreased during S phase of the mitotic cell cycle.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased protein degradation during vegetative growth","termid":"FYPO:0000846"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0002274"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0002274","FYPO:0000002","FYPO:0001985","FYPO:0001320"],"is_obsolete":false,"name":"decreased protein degradation during mitotic S phase","synonyms":[{"name":"decreased protein breakdown during mitotic S phase","type":"exact"},{"name":"decreased protein catabolic process during mitotic S phase","type":"exact"},{"name":"decreased protein catabolism during mitotic S phase","type":"exact"},{"name":"decreased protein degradation during S phase during mitotic cell cycle","type":"related"},{"name":"decreased protein degradation during mitotic S phase during vegetative growth","type":"exact"},{"name":"reduced protein degradation during mitotic S phase","type":"exact"}],"termid":"FYPO:0005194"}


id: PR:P36621
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"An adenylyl cyclase-associated protein 2 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"adenylyl cyclase-associated protein (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC306.09c","secondary_identifiers":["UniProtKB:P36621"],"synonyms":[{"name":"CAP (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"SPCC306.09c","type":"related"},{"name":"Spom972h-CAP2","type":"exact"},{"name":"cap","type":"related"}],"termid":"PR:P36621"}


id: FYECO:0000075
data:
  {"annotation_feature_type":"gene","cv_name":"fission_yeast_phenotype_condition","definition":"An experimental condition in which NADP+ was added to the medium or assay buffer in excess compared to standard medium or assay buffers.","definition_xrefs":["PomBase:al"],"direct_ancestors":[{"relation_name":"is_a","term_name":"grouping excess","termid":"FYECO:0000109"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"+ NADP+","termid":"FYECO:0000075"}


id: PBO:0078368
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-Glu (anticodon TTC) 12-1","termid":"PBO:0078368"}


id: PBO:0080773
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"XKR4 antisense RNA 1","termid":"PBO:0080773"}


id: PBO:0089244
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"serine hydroxymethyltransferase Shm1","termid":"PBO:0089244"}


id: PBO:0080566
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"WD repeat and FYVE domain containing 1","termid":"PBO:0080566"}


id: GO:1901040
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of peptide antigen transport.","definition_xrefs":["GOC:bf","GOC:TermGenie","PMID:16691491"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of antigen processing and presentation of peptide antigen","termid":"GO:0002584"},{"relation_name":"is_a","term_name":"negative regulation of transport","termid":"GO:0051051"},{"relation_name":"is_a","term_name":"regulation of peptide antigen transport","termid":"GO:1901039"},{"relation_name":"negatively_regulates","term_name":"peptide antigen transport","termid":"GO:0046968"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"negatively_regulates","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0008150","GO:0006810"],"is_obsolete":false,"name":"negative regulation of peptide antigen transport","synonyms":[{"name":"down regulation of peptide antigen transport","type":"exact"},{"name":"down-regulation of peptide antigen transport","type":"exact"},{"name":"downregulation of peptide antigen transport","type":"exact"},{"name":"inhibition of peptide antigen transport","type":"narrow"}],"termid":"GO:1901040"}


id: PBO:0085155
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Nucleosome remodeling protein; functions in various aspects of transcription, chromatin maintenance, and RNA processing; required for fidelity of promoter selection through maintenance of chromatin structure during transcription in order to inhibit transcription from promoters within coding regions; required for H3K36 trimethylation but not dimethylation by Set2p","termid":"PBO:0085155"}


id: GO:0102582
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: cyanidin 3-O-(6-O-(E)-4-coumaroyl-beta-D-glucoside) + UDP-alpha-D-xylose = cyanidin 3-O-[2''-O-xylosyl) 6''-O-(p-coumaroyl) glucoside + UDP + H+.","definition_xrefs":["GOC:pz","EC:2.4.2.-"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pentosyltransferase activity","termid":"GO:0016763"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016757"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016740","GO:0003824","GO:0003674","GO:0016757"],"is_obsolete":false,"name":"cyanidin 3-O-p-coumaroylglucoside 2-O''-xylosyltransferase activity","secondary_identifiers":["MetaCyc:RXN-15328"],"termid":"GO:0102582"}


id: GO:0018653
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 3-methyl-2-oxo-1,2-dihydroquinoline + O2 + 2 H+ + 2 e- = H2O + 6-hydroxy-3-methyl-2-oxo-1,2-dihydroquinoline.","definition_xrefs":["EC:1.14.13.-"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen","termid":"GO:0016709"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016491","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"3-methyl-2-oxo-1,2-dihydroquinoline 6-monooxygenase activity","secondary_identifiers":["UM-BBD_reactionID:r0046"],"termid":"GO:0018653"}


id: PBO:0069659
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 936, pseudogene","termid":"PBO:0069659"}


id: GO:0047652
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: allantoate + H2O + H+ = CO2 + NH3 + ureidoglycine.","definition_xrefs":["MetaCyc:ALLANTOATE-DEIMINASE-RXN","EC:3.5.3.9"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines","termid":"GO:0016813"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0016810"}],"interesting_parent_ids":["GO:0003674","GO:0016810","GO:0003824","GO:0016787"],"is_obsolete":false,"name":"allantoate deiminase activity","secondary_identifiers":["RHEA:27485"],"synonyms":[{"name":"allantoate amidinohydrolase (decarboxylating)","type":"related"},{"name":"allantoate amidohydrolase activity","type":"related"}],"termid":"GO:0047652"}


id: GO:0034210
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The removal of an acetyl group from a sterol molecule. An acetyl group is CH3CO-, derived from acetic [ethanoic] acid.","definition_xrefs":["GOC:rb","PMID:18034159"],"gene_count":0,"genotype_count":0,"name":"obsolete sterol deacetylation (obsolete GO:0034210)","termid":"GO:0034210"}


id: GO:0044706
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A multicellular organism process which involves another multicellular organism of the same or different species.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"multicellular organismal process","termid":"GO:0032501"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"multi-multicellular organism process","termid":"GO:0044706"}


id: PBO:0055758
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"lncRNA p53 regulated and ESC associated 2","termid":"PBO:0055758"}


id: PBO:0072702
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RuvB like AAA ATPase 2","termid":"PBO:0072702"}


id: FYPO:0007822
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A physical cellular phenotype in which vacuoles are larger than normal in G0 phase.","definition_xrefs":["PMID:34147496","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"large vacuoles","termid":"FYPO:0007821"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000002"],"is_obsolete":false,"name":"large vacuoles during G0","synonyms":[{"name":"enlarged vacuoles during G0","type":"exact"},{"name":"large vacuoles during cell quiescence","type":"exact"},{"name":"large vacuoles during quiescence","type":"exact"}],"termid":"FYPO:0007822"}


id: GO:0006220
data:
  {"annotated_genes":["SJAG_03676","SJAG_02887","SJAG_00197","SJAG_00444","SJAG_00964","SJAG_00885","SJAG_00533","SJAG_04627","SJAG_04709","SJAG_00412","SJAG_00694","SJAG_05024","SJAG_04713","SJAG_03771","SJAG_00779","SJAG_04487","SJAG_03164","SJAG_04354","SJAG_02874","SJAG_03708","SJAG_04657","SJAG_04665"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[84041],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0044210"},{"annotations":[94693,85680,108109,89619,112900],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0044205"},{"annotations":[111748],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0046705"},{"annotations":[103448,88641],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0046704"},{"annotations":[67001],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0009224"},{"annotations":[96247],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006241"},{"annotations":[110153],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0046036"},{"annotations":[89165,111094],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0044211"},{"annotations":[88642,103449,91691],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006240"},{"annotations":[114167],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006233"},{"annotations":[85608,104571],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006231"},{"annotations":[88643,85609,114168],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006235"},{"annotations":[114169],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006227"},{"annotations":[104572,95175],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006226"},{"annotations":[95176],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0046081"},{"annotations":[111749],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006225"},{"annotations":[110155],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006256"},{"annotations":[83716,84700,88171,89166,111096],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0044206"},{"annotations":[89622,96249,102702],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006228"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways involving a pyrimidine nucleotide, a compound consisting of nucleoside (a pyrimidine base linked to a deoxyribose or ribose sugar) esterified with a phosphate group at either the 3' or 5'-hydroxyl group of the sugar.","definition_xrefs":["GOC:go_curators","ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nucleotide metabolic process","termid":"GO:0009117"},{"relation_name":"is_a","term_name":"pyrimidine-containing compound metabolic process","termid":"GO:0072527"}],"gene_count":22,"genes_by_uniquename":{"SJAG_00197":null,"SJAG_00412":null,"SJAG_00444":null,"SJAG_00533":null,"SJAG_00694":null,"SJAG_00779":null,"SJAG_00885":null,"SJAG_00964":null,"SJAG_02874":null,"SJAG_02887":null,"SJAG_03164":null,"SJAG_03676":null,"SJAG_03708":null,"SJAG_03771":null,"SJAG_04354":null,"SJAG_04487":null,"SJAG_04627":null,"SJAG_04657":null,"SJAG_04665":null,"SJAG_04709":null,"SJAG_04713":null,"SJAG_05024":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0055086"}],"interesting_parent_ids":["GO:0044281","GO:0055086","GO:0008150"],"is_obsolete":false,"name":"pyrimidine nucleotide metabolic process","references_by_uniquename":{"GO_REF:0000107":null,"GO_REF:0000108":null},"synonyms":[{"name":"pyrimidine metabolic process","type":"broad"},{"name":"pyrimidine metabolism","type":"broad"},{"name":"pyrimidine nucleotide metabolism","type":"exact"}],"termid":"GO:0006220","terms_by_termid":{"GO:0006225":null,"GO:0006226":null,"GO:0006227":null,"GO:0006228":null,"GO:0006231":null,"GO:0006233":null,"GO:0006235":null,"GO:0006240":null,"GO:0006241":null,"GO:0006256":null,"GO:0009224":null,"GO:0044205":null,"GO:0044206":null,"GO:0044210":null,"GO:0044211":null,"GO:0046036":null,"GO:0046081":null,"GO:0046704":null,"GO:0046705":null}}


id: PBO:0078561
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tripartite motif containing 49","termid":"PBO:0078561"}


id: GO:0071606
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The appearance of chemokine (C-C motif) ligand 4 due to biosynthesis or secretion following a cellular stimulus, resulting in an increase in its intracellular or extracellular levels.","definition_xrefs":["GOC:add","GOC:rv"],"direct_ancestors":[{"relation_name":"is_a","term_name":"chemokine production","termid":"GO:0032602"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0008150","GO:0010467"],"is_obsolete":false,"name":"chemokine (C-C motif) ligand 4 production","synonyms":[{"name":"CCL4 production","type":"exact"},{"name":"MIP-1b production","type":"exact"},{"name":"macrophage inflammatory protein production","type":"broad"}],"termid":"GO:0071606"}


id: PBO:0068579
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U2 small nuclear 30, pseudogene","termid":"PBO:0068579"}


id: PBO:0047546
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"fibroblast growth factor 7 pseudogene 5","termid":"PBO:0047546"}


id: GO:1990100
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A protein complex containing homohexameric DNA helicase DnaB, and the DNA helicase loader DnaC. The helicase loader DnaC delivers DnaB to the chromosomal origin (oriC).","definition_xrefs":["PMID:20129058","GOC:bhm"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein-containing complex","termid":"GO:0032991"},{"relation_name":"part_of","term_name":"primosome complex","termid":"GO:1990077"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0005694"},{"rel_name":"part_of","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0032991","GO:0005575","GO:0005694"],"is_obsolete":false,"name":"DnaB-DnaC complex","synonyms":[{"name":"DnaB6-DnaC3 complex","type":"narrow"},{"name":"DnaB6-DnaC6 complex","type":"narrow"},{"name":"helicase-loading complex","type":"broad"}],"termid":"GO:1990100"}


id: PATO:0001271
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A color consisting of green hue and high saturation.","definition_xrefs":["PATOC:GVG"],"direct_ancestors":[{"relation_name":"is_a","term_name":"green","termid":"PATO:0000320"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"saturated green","synonyms":[{"name":"bright green","type":"related"}],"termid":"PATO:0001271"}


id: GO:0140810
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: H2O + histone H1 L-arginyl (position 54)= histone H1 L-citrullyl (position 54) + NH4+, resulting in histone H1 citrullination at position 54.","definition_xrefs":["PMID:24463520"],"direct_ancestors":[{"relation_name":"is_a","term_name":"histone arginine deiminase activity","termid":"GO:0140794"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016810"},{"rel_name":"is_a","termid":"GO:0140096"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0140096","GO:0003674","GO:0016810","GO:0003824","GO:0016787"],"is_obsolete":false,"name":"histone H1R54 arginine deiminase activity","synonyms":[{"name":"H1-R54 citrullination","type":"exact"},{"name":"histone H1-R54 deiminase activity","type":"exact"},{"name":"histone-arginine deiminase activity (H1-R54 specific)","type":"exact"}],"termid":"GO:0140810"}


id: PBO:0052907
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"keratin associated protein 12-4","termid":"PBO:0052907"}


id: GO:0140091
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A muscle cell-specific SWI/SNF-type complex that contains eight to fourteen proteins, including both conserved (core) and nonconserved components; contains the ATPase product of either the SMARCA4/BAF190A/BRG1 gene, the mammalian ortholog of the yeast SNF2 gene, or the SMARCA2/BAF190B/BRM gene, the mammalian ortholog of the Drosophila brm (brahma) gene, or an ortholog of either of these genes, and the muscle-specific product of the DPF3/BAF45C gene or an ortholog thereof.","definition_xrefs":["PMID:11175787","PMID:8895581","PMID:12620226","PMID:15525990","PMID:8804307","GO:bhm"],"direct_ancestors":[{"relation_name":"is_a","term_name":"SWI/SNF superfamily-type complex","termid":"GO:0070603"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005694"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0005634"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0032991","GO:0005575","GO:0005634","GO:0005694"],"is_obsolete":false,"name":"mBAF complex","synonyms":[{"name":"muscle-specific BAF complex","type":"exact"},{"name":"muscle-specific SWI/SNF complex","type":"exact"},{"name":"muscle-type BAF complex","type":"exact"},{"name":"muscle-type SWI/SNF complex","type":"exact"}],"termid":"GO:0140091"}


id: PBO:0111760
data:
  {"annotation_feature_type":"gene","cv_name":"pombase_family_or_domain","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"thioredoxin family","termid":"PBO:0111760"}


id: FYPO:0001134
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of 18S ribosomal RNA measured in a cell is normal (i.e. indistinguishable from wild type).","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal rRNA or precursor level","termid":"FYPO:0006000"},{"relation_name":"is_a","term_name":"normal mature ncRNA level","termid":"FYPO:0006469"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001312"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0000002","FYPO:0000257","FYPO:0001312"],"is_obsolete":false,"name":"normal mature 18S rRNA level","synonyms":[{"name":"normal 18S rRNA level","type":"broad"},{"name":"normal mature 18S rRNA accumulation","type":"related"},{"name":"normal mature 18S rRNA level during mitotic cell cycle","type":"related"},{"name":"normal mature 18S rRNA level during vegetative growth","type":"exact"},{"name":"normal mature 18S rRNA transcript level","type":"exact"}],"termid":"FYPO:0001134"}


id: PBO:0067915
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 5S ribosomal pseudogene 217","termid":"PBO:0067915"}


id: GO:0102650
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: acetoacetyl-ACP + L-tryptophan + ATP = cyclo-acetoacetyl-L-tryptophan + AMP + diphosphoric acid + 2 H+ + a holo-[acyl-carrier protein].","definition_xrefs":["GOC:pz","EC:6.3.2.-"],"direct_ancestors":[{"relation_name":"is_a","term_name":"acid-amino acid ligase activity","termid":"GO:0016881"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016874"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016874"],"is_obsolete":false,"name":"cyclo-acetoacetyl-L-tryptophan synthetase activity","secondary_identifiers":["MetaCyc:RXN-15811"],"termid":"GO:0102650"}


id: GO:0004485
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 3-methylbut-2-enoyl-CoA + ATP + bicarbonate = trans-3-methylglutaconyl-CoA + ADP + 2 H+ + phosphate.","definition_xrefs":["EC:6.4.1.4","RHEA:13589"],"direct_ancestors":[{"relation_name":"is_a","term_name":"CoA carboxylase activity","termid":"GO:0016421"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016874"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016874"],"is_obsolete":false,"name":"methylcrotonoyl-CoA carboxylase activity","secondary_identifiers":["Reactome:R-HSA-508308","Reactome:R-HSA-70773","KEGG_REACTION:R04138","MetaCyc:METHYLCROTONYL-COA-CARBOXYLASE-RXN"],"synonyms":[{"name":"3-methylcrotonoyl-CoA:carbon-dioxide ligase (ADP-forming)","type":"related"},{"name":"MCCC activity","type":"exact"},{"name":"beta-methylcrotonyl CoA carboxylase activity","type":"related"},{"name":"beta-methylcrotonyl coenzyme A carboxylase activity","type":"related"},{"name":"beta-methylcrotonyl-CoA carboxylase activity","type":"related"},{"name":"methylcrotonyl coenzyme A carboxylase activity","type":"related"},{"name":"methylcrotonyl-CoA carboxylase activity","type":"related"}],"termid":"GO:0004485"}


id: PR:O94502
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A solute carrier family 25 member 41 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO03222","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized mitochondrial carrier C12D12.05c (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC12D12.05c","secondary_identifiers":["UniProtKB:O94502"],"synonyms":[{"name":"Spom972h-SLC25A41","type":"exact"}],"termid":"PR:O94502"}


id: PR:Q10413
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPAC1F3.08c gene.","definition_xrefs":["UniProtKB:Q10413","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized protein C1F3.08c (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC1F3.08c","synonyms":[{"name":"Spom972h-SPAC1F3.08c","type":"exact"}],"termid":"PR:Q10413"}


id: PBO:0052559
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"KLRK1 antisense RNA 1","termid":"PBO:0052559"}


id: GO:0036528
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The removal of a sugar or dicarbonyl from a lysine residue of a glycated protein.","definition_xrefs":["PMID:25416785","PMID:14568004","GOC:bf","GOC:PARL"],"direct_ancestors":[{"relation_name":"is_a","term_name":"peptidyl-lysine modification","termid":"GO:0018205"},{"relation_name":"is_a","term_name":"protein deglycation","termid":"GO:0036525"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"peptidyl-lysine deglycation","synonyms":[{"name":"deglycation of N-acetyllysine","type":"related"}],"termid":"GO:0036528"}


id: PBO:0056567
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mucolipin TRP cation channel 2","termid":"PBO:0056567"}


id: FYPO:0007370
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell population phenotype in which a cell population in the vegetative growth phase of the life cycle grows at a faster rate than normal in a medium containing fructose as the carbon source.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased cell population growth rate","termid":"FYPO:0000636"},{"relation_name":"is_a","term_name":"increased cell population growth on fructose carbon source","termid":"FYPO:0009095"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000139"},{"rel_name":"is_a","termid":"FYPO:0000003"},{"rel_name":"is_a","termid":"FYPO:0002058"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0002057"}],"interesting_parent_ids":["FYPO:0000003","FYPO:0002057","FYPO:0002058","FYPO:0000139","FYPO:0005447","FYPO:0001985"],"is_obsolete":false,"name":"increased cell population growth rate on fructose carbon source","synonyms":[{"name":"enhanced growth on fructose","type":"related"},{"name":"fast cell population growth on fructose carbon source","type":"exact"},{"name":"increased cell population proliferation on fructose carbon source","type":"related"},{"name":"increased cell proliferation on fructose carbon source","type":"related"},{"name":"increased vegetative cell population growth rate on fructose carbon source","type":"exact"}],"termid":"FYPO:0007370"}


id: GO:0106096
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a ceramide stimulus.","definition_xrefs":["PMID:18006463"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to lipid","termid":"GO:0033993"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"response to ceramide","termid":"GO:0106096"}


id: PBO:0076725
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TCL1 family AKT coactivator A","termid":"PBO:0076725"}


id: GO:0035497
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a cyclic AMP response element (CRE), a short palindrome-containing sequence found in the promoters of genes whose expression is regulated in response to cyclic AMP.","definition_xrefs":["PMID:2875459","PMID:2900470"],"direct_ancestors":[{"relation_name":"is_a","term_name":"RNA polymerase II cis-regulatory region sequence-specific DNA binding","termid":"GO:0000978"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0000976"},{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003677"}],"interesting_parent_ids":["GO:0000976","GO:0005488","GO:0003677","GO:0003674"],"is_obsolete":false,"name":"cAMP response element binding","synonyms":[{"name":"CRE binding","type":"exact"},{"name":"cAMP-responsive element binding","type":"exact"},{"name":"cyclic AMP response element binding","type":"exact"},{"name":"cyclic-AMP response element binding","type":"exact"},{"name":"cyclic-AMP-responsive element binding","type":"exact"}],"termid":"GO:0035497"}


id: GO:0021651
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which the anatomical structure of rhombomere 1 is generated and organized. Rhombomeres are transverse segments of the developing rhombencephalon. Rhombomeres are lineage restricted, express different genes from one another, and adopt different developmental fates. Rhombomeres are numbered in an anterior to posterior order.","definition_xrefs":["GOC:curators","GOC:dph","GOC:jid","GOC:dgh","GO_REF:0000021","GOC:cls"],"direct_ancestors":[{"relation_name":"is_a","term_name":"rhombomere morphogenesis","termid":"GO:0021593"},{"relation_name":"part_of","term_name":"rhombomere 1 development","termid":"GO:0021567"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"rhombomere 1 morphogenesis","termid":"GO:0021651"}


id: GO:0052776
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The pathway resulting in the breakdown of diacetylchitobiose into simpler products, including glucosamine and glucosamine. The catabolism proceeds by the deacetylation of diacetylchitobiose, producing acetate and GlcN-GlcNAc; the latter is cleaved to produce glucosamine (GlcN) and N-acetylglucosamine (GlcNAc). The N-acetylglucosamine (GlcNAc) is then deacetylated to produce glucosamine (GlcN) and acetate.","definition_xrefs":["GOC:bf","GOC:mengo_curators","MetaCyc:PWY-6855","PMID:16232910","PMID:15136574","PMID:16736587"],"direct_ancestors":[{"relation_name":"is_a","term_name":"glucosamine metabolic process","termid":"GO:0006041"},{"relation_name":"is_a","term_name":"acetate metabolic process","termid":"GO:0006083"},{"relation_name":"is_a","term_name":"diacetylchitobiose catabolic process","termid":"GO:0052777"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0044281"],"is_obsolete":false,"name":"diacetylchitobiose catabolic process to glucosamine and acetate","termid":"GO:0052776"}


id: PBO:0076905
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"testis expressed 261","termid":"PBO:0076905"}


id: PBO:0080965
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger and BTB domain containing 7B","termid":"PBO:0080965"}


id: PR:000050476
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein kinase wis1 (Schizosaccharomyces pombe) that has not been phosphorylated on residues equivalent to Ser-469 and Thr-473 of the amino acid sequence represented by UniProtKB:P33886. Example: UniProtKB:P33886, Ser-469/Thr-473, PR:000026291.","definition_xrefs":["PomBase:VW","PMID:12181336","PRO:DAN"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein kinase wis1 (Schizosaccharomyces pombe)","termid":"PR:000050474"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"wis1/UnPhos:(S469,T473)","pombase_gene_id":"SPBC409.07c","synonyms":[{"name":"Spom-wis1/UnPhos:1","type":"exact"},{"name":"UniProtKB:P33886, Ser-469/Thr-473, PR:000026291","type":"narrow"},{"name":"wis1/UnPhos:(S469,T473)","type":"exact"}],"termid":"PR:000050476"}


id: PBO:0075072
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nucleolar RNA, C/D box 121B","termid":"PBO:0075072"}


id: GO:0140535
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id: GO:0000722
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id: MOD:01402
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id: PBO:0041590
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"carbonic anhydrase 4","termid":"PBO:0041590"}


id: FYPO:0001640
data:
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id: RO:0002429
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id: GO:2000241
data:
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id: PBO:0087581
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Subunit of the Anaphase-Promoting Complex/Cyclosome (APC/C); APC/C is a ubiquitin-protein ligase required for degradation of anaphase inhibitors, including mitotic cyclins, during the metaphase/anaphase transition","termid":"PBO:0087581"}


id: PBO:0063146
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PATJ divergent transcript","termid":"PBO:0063146"}


id: PBO:0041869
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"calsequestrin 1","termid":"PBO:0041869"}


id: PBO:0017760
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"spore wall assembly protein Mug56 (predicted)","termid":"PBO:0017760"}


id: GO:0036107
data:
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id: PBO:0038895
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ADGRA1 antisense RNA 1","termid":"PBO:0038895"}


id: GO:0106028
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The organization process which results in the disassembly (either partial or complete) of constituent parts of a neuron projection. A neuron projection is a prolongation or process extending from a nerve cell, e.g. an axon or dendrite.","definition_xrefs":["GOC:aruk","GOC:bc","PMID:11585923"],"direct_ancestors":[{"relation_name":"is_a","term_name":"neuron projection organization","termid":"GO:0106027"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"neuron projection retraction","synonyms":[{"name":"neuron projection disassembly","type":"exact"}],"termid":"GO:0106028"}


id: PBO:0072328
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  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein S26 pseudogene 14","termid":"PBO:0072328"}


id: PBO:0017999
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA-binding protein Nop4 (predicted)","termid":"PBO:0017999"}


id: PATO:0001577
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  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A permeability which is relatively high.","definition_xrefs":["PATO:GVG"],"direct_ancestors":[{"relation_name":"increased_in_magnitude_relative_to","term_name":"normal","termid":"PATO:0000461"},{"relation_name":"is_a","term_name":"permeable","termid":"PATO:0000982"},{"relation_name":"is_a","term_name":"increased object quality","termid":"PATO:0002305"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"increased permeability","synonyms":[{"name":"high permeability","type":"exact"}],"termid":"PATO:0001577"}


id: FYPO:0003152
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of protein measured in a cell during a cellular response to heat is higher than normal. Total protein or a specific protein may be affected.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased protein level during vegetative growth","termid":"FYPO:0001327"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"output_of","termid":"FYPO:0006551"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"output_of","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0005447","FYPO:0006551","FYPO:0000002","FYPO:0001985"],"is_obsolete":false,"name":"increased protein level during cellular response to heat","synonyms":[{"name":"increased protein accumulation during cellular response to heat","type":"related"},{"name":"increased protein level during cellular response to heat during mitotic cell cycle","type":"related"},{"name":"increased protein level during cellular response to heat during vegetative growth","type":"exact"}],"termid":"FYPO:0003152"}


id: PBO:0058016
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 3942","termid":"PBO:0058016"}


id: PBO:0053538
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 540","termid":"PBO:0053538"}


id: GO:0060975
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The orderly movement of a cardioblast toward the midline to form the heart field. A cardioblast is a cardiac precursor cell. It is a cell that has been committed to a cardiac fate, but will undergo more cell division rather than terminally differentiating.","definition_xrefs":["GOC:mtg_heart"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cardioblast migration","termid":"GO:0003260"},{"relation_name":"is_a","term_name":"cell migration to the midline involved in heart development","termid":"GO:0003318"},{"relation_name":"part_of","term_name":"convergent extension involved in organogenesis","termid":"GO:0060029"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cardioblast migration to the midline involved in heart field formation","synonyms":[{"name":"cardiac progenitor cell midline migration","type":"exact"},{"name":"cardioblast midline convergence","type":"exact"}],"termid":"GO:0060975"}


id: GO:0043169
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id: PATO:0001945
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id: PR:P40373
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id: GO:0010958
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id: GO:0048319
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id: PBO:0075157
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id: GO:1905067
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id: PBO:0074767
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id: FYPO:0007833
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id: PBO:0005192
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id: GO:0043414
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  {"annotated_genes":["SJAG_02350","SJAG_03332","SJAG_03008","SJAG_03289","SJAG_02377","SJAG_02281","SJAG_03367","SJAG_04367","SJAG_02042","SJAG_02352","SJAG_05249","SJAG_03773","SJAG_04993","SJAG_00722","SJAG_01958","SJAG_03713","SJAG_02386","SJAG_04735","SJAG_01269","SJAG_04736","SJAG_03901","SJAG_00499","SJAG_02302","SJAG_00325","SJAG_00943","SJAG_05334","SJAG_00744","SJAG_04453","SJAG_04680","SJAG_01375","SJAG_02821","SJAG_03877","SJAG_03016","SJAG_04181","SJAG_02024","SJAG_02637","SJAG_03410","SJAG_00255","SJAG_04848","SJAG_02099","SJAG_04649","SJAG_02417","SJAG_01314","SJAG_04034","SJAG_04890","SJAG_00886","SJAG_01261"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[92240],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0036261"},{"annotations":[97560],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0070901"},{"annotations":[59637],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0106005"},{"annotations":[92413,91098],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0070476"},{"annotations":[87525,109812,112385,91824,91389],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0070475"},{"annotations":[63711,94605,63102,95047,65150,85856,105295,59083],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0031167"},{"annotations":[94982,104286,106398,107538,90329],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0000452"},{"annotations":[58337,115121,111885],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0106004"},{"annotations":[106357,102952],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0106217"},{"annotations":[101959,86678],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0002946"},{"annotations":[84823,97149,99074,94267,102108,92414,90133,86679,94045,94274,87156,108345,104671,89005,90897,111004,114115],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0030488"},{"annotations":[95591,97561],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0002939"},{"annotations":[103458,100323],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0002940"},{"annotations":[111005],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0002128"},{"annotations":[84514,90134],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0002127"},{"annotations":[94046,99075],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0002130"}]},"cv_name":"biological_process","definition":"The covalent attachment of a methyl residue to one or more monomeric units in a polypeptide, polynucleotide, polysaccharide, or other biological macromolecule.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"methylation","termid":"GO:0032259"},{"relation_name":"is_a","term_name":"macromolecule modification","termid":"GO:0043412"}],"gene_count":47,"genes_by_uniquename":{"SJAG_00255":null,"SJAG_00325":null,"SJAG_00499":null,"SJAG_00722":null,"SJAG_00744":null,"SJAG_00886":null,"SJAG_00943":null,"SJAG_01261":null,"SJAG_01269":null,"SJAG_01314":null,"SJAG_01375":null,"SJAG_01958":null,"SJAG_02024":null,"SJAG_02042":null,"SJAG_02099":null,"SJAG_02281":null,"SJAG_02302":null,"SJAG_02350":null,"SJAG_02352":null,"SJAG_02377":null,"SJAG_02386":null,"SJAG_02417":null,"SJAG_02637":null,"SJAG_02821":null,"SJAG_03008":null,"SJAG_03016":null,"SJAG_03289":null,"SJAG_03332":null,"SJAG_03367":null,"SJAG_03410":null,"SJAG_03713":null,"SJAG_03773":null,"SJAG_03877":null,"SJAG_03901":null,"SJAG_04034":null,"SJAG_04181":null,"SJAG_04367":null,"SJAG_04453":null,"SJAG_04649":null,"SJAG_04680":null,"SJAG_04735":null,"SJAG_04736":null,"SJAG_04848":null,"SJAG_04890":null,"SJAG_04993":null,"SJAG_05249":null,"SJAG_05334":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"macromolecule methylation","references_by_uniquename":{"GO_REF:0000104":null,"GO_REF:0000107":null,"GO_REF:0000108":null},"termid":"GO:0043414","terms_by_termid":{"GO:0000452":null,"GO:0002127":null,"GO:0002128":null,"GO:0002130":null,"GO:0002939":null,"GO:0002940":null,"GO:0002946":null,"GO:0030488":null,"GO:0031167":null,"GO:0036261":null,"GO:0070475":null,"GO:0070476":null,"GO:0070901":null,"GO:0106004":null,"GO:0106005":null,"GO:0106217":null}}


id: GO:0008988
data:
  {"annotated_genes":["SJAG_01958"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[91391],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0052907"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: S-adenosyl-L-methionine + rRNA = S-adenosyl-L-homocysteine + rRNA containing N6-methyladenine.","definition_xrefs":["RHEA:58728"],"direct_ancestors":[{"relation_name":"is_a","term_name":"N-methyltransferase activity","termid":"GO:0008170"},{"relation_name":"is_a","term_name":"rRNA (adenine) methyltransferase activity","termid":"GO:0016433"}],"gene_count":1,"genes_by_uniquename":{"SJAG_01958":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0140098"},{"rel_name":"is_a","termid":"GO:0016741"}],"interesting_parent_ids":["GO:0003824","GO:0016740","GO:0016741","GO:0140098","GO:0003674"],"is_obsolete":false,"name":"rRNA (adenine-N6-)-methyltransferase activity","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"ErmC 23S rRNA methyltransferase","type":"narrow"},{"name":"S-adenosyl-L-methionine:rRNA (adenine-6-N-)-methyltransferase activity","type":"related"},{"name":"S-adenosyl-L-methionine:rRNA (adenine-N6-)-methyltransferase activity","type":"related"},{"name":"gene ksgA methyltransferase","type":"narrow"},{"name":"ribonucleic acid-adenine (N(6)) methylase activity","type":"related"},{"name":"ribonucleic acid-adenine (N6) methylase activity","type":"related"},{"name":"ribosomal ribonucleate adenine 6-methyltransferase activity","type":"related"}],"termid":"GO:0008988","terms_by_termid":{"GO:0052907":null}}


id: GO:0106080
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a GATOR1 complex.","definition_xrefs":["PMID:28199306"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein-containing complex binding","termid":"GO:0044877"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005488"}],"interesting_parent_ids":["GO:0005488","GO:0003674"],"is_obsolete":false,"name":"GATOR1 complex binding","termid":"GO:0106080"}


id: PBO:0039822
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ADP ribosylation factor guanine nucleotide exchange factor 2","termid":"PBO:0039822"}


id: GO:1900218
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of apoptotic process involved in metanephric nephron tubule development.","definition_xrefs":["GOC:mtg_kidney_jan10","PMID:17314325","GOC:TermGenie","GOC:yaf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of apoptotic process involved in metanephric nephron tubule development","termid":"GO:1900217"},{"relation_name":"is_a","term_name":"negative regulation of apoptotic process involved in development","termid":"GO:1904746"},{"relation_name":"negatively_regulates","term_name":"apoptotic process involved in metanephric nephron tubule development","termid":"GO:1900205"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of apoptotic process involved in metanephric nephron 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type I programmed cell death of metanephric nephron tubule development","type":"narrow"},{"name":"inhibition of apoptosis of metanephric nephron tubule development","type":"narrow"},{"name":"inhibition of apoptotic cell death of metanephric nephron tubule development","type":"exact"},{"name":"inhibition of apoptotic process involved in metanephric nephron tubule development","type":"narrow"},{"name":"inhibition of apoptotic process of metanephric nephron tubule development","type":"exact"},{"name":"inhibition of apoptotic program of metanephric nephron tubule development","type":"narrow"},{"name":"inhibition of apoptotic programmed cell death of metanephric nephron tubule development","type":"exact"},{"name":"inhibition of programmed cell death by apoptosis of metanephric nephron tubule development","type":"exact"},{"name":"inhibition of signaling (initiator) caspase activity of metanephric nephron tubule development","type":"related"},{"name":"inhibition of type I programmed cell death of metanephric nephron tubule development","type":"narrow"},{"name":"negative regulation of apoptosis of metanephric nephron tubule development","type":"narrow"},{"name":"negative regulation of apoptotic cell death of metanephric nephron tubule development","type":"exact"},{"name":"negative regulation of apoptotic process of metanephric nephron tubule development","type":"exact"},{"name":"negative regulation of apoptotic program of metanephric nephron tubule development","type":"narrow"},{"name":"negative regulation of apoptotic programmed cell death of metanephric nephron tubule development","type":"exact"},{"name":"negative regulation of programmed cell death by apoptosis of metanephric nephron tubule development","type":"exact"},{"name":"negative regulation of signaling (initiator) caspase activity of metanephric nephron tubule development","type":"related"},{"name":"negative regulation of type I programmed cell death of metanephric nephron tubule development","type":"narrow"}],"termid":"GO:1900218"}


id: PBO:0087362
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Sporulation-specific activator of Chs3p (chitin synthase III); required for the synthesis of the chitosan layer of ascospores; transcriptionally induced at alkaline pH; SHC1 has a paralog, SKT5, that arose from the whole genome duplication","termid":"PBO:0087362"}


id: GO:0098552
data:
  {"annotated_genes":["SJAG_01242","SJAG_04509","SJAG_02102","SJAG_00218","SJAG_01134","SJAG_01738","SJAG_01774","SJAG_03204","SJAG_04789","SJAG_00109","SJAG_02587","SJAG_00605","SJAG_05272","SJAG_02444","SJAG_04077","SJAG_04875","SJAG_05207","SJAG_02916","SJAG_03345","SJAG_03464","SJAG_00415","SJAG_01307","SJAG_02173","SJAG_01086","SJAG_02435","SJAG_00368","SJAG_01114","SJAG_01290","SJAG_01835","SJAG_03640","SJAG_04483","SJAG_02260","SJAG_01806","SJAG_04209","SJAG_03596","SJAG_00310","SJAG_00077","SJAG_02196","SJAG_02233","SJAG_00784","SJAG_00797","SJAG_00852","SJAG_04363","SJAG_04026","SJAG_04666","SJAG_04238","SJAG_00096","SJAG_02989","SJAG_00340","SJAG_04732","SJAG_04266","SJAG_02605","SJAG_02093","SJAG_01249","SJAG_04685","SJAG_03081","SJAG_01029","SJAG_00948","SJAG_04850","SJAG_00254","SJAG_04851","SJAG_02392","SJAG_04018","SJAG_04583","SJAG_05268"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[84320,105500],"is_not":false,"summary":null,"term":"GO:0098552"},{"annotations":[102013,90911,90101,91279,106046],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0098554"},{"annotations":[86797],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0010009"},{"annotations":[98686,95440,102770,100996,85485,96700,100642,111940],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0032473"},{"annotations":[85954,102771,103224,88781,107057,84134,98603,95161,84202,88615,99913],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0009898"},{"annotations":[92043,102772],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0106186"},{"annotations":[109229,102741,110933,113496,110558,114469,91047,86149,110658,100184,88078,91033,109934,90259,87780,112452,98426,114907,91045,103969,86346,113925,91046,96991,98433,91476,111771,98432],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0009897"},{"annotations":[106735],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0031234"},{"annotations":[96634,99950],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0099616"},{"annotations":[110023,103318,102672,90423,105208],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0005834"},{"annotations":[90913,95958],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0098553"},{"annotations":[90020,92442,86184],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0099617"}]},"cv_name":"cellular_component","definition":"A cellular component consisting of one leaflet of a membrane bilayer and any proteins embedded or anchored in it or attached to its surface.","definition_xrefs":["GOC:dos"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular anatomical entity","termid":"GO:0110165"},{"relation_name":"part_of","term_name":"membrane","termid":"GO:0016020"}],"gene_count":65,"genes_by_uniquename":{"SJAG_00077":null,"SJAG_00096":null,"SJAG_00109":null,"SJAG_00218":null,"SJAG_00254":null,"SJAG_00310":null,"SJAG_00340":null,"SJAG_00368":null,"SJAG_00415":null,"SJAG_00605":null,"SJAG_00784":null,"SJAG_00797":null,"SJAG_00852":null,"SJAG_00948":null,"SJAG_01029":null,"SJAG_01086":null,"SJAG_01114":null,"SJAG_01134":null,"SJAG_01242":null,"SJAG_01249":null,"SJAG_01290":null,"SJAG_01307":null,"SJAG_01738":null,"SJAG_01774":null,"SJAG_01806":null,"SJAG_01835":null,"SJAG_02093":null,"SJAG_02102":null,"SJAG_02173":null,"SJAG_02196":null,"SJAG_02233":null,"SJAG_02260":null,"SJAG_02392":null,"SJAG_02435":null,"SJAG_02444":null,"SJAG_02587":null,"SJAG_02605":null,"SJAG_02916":null,"SJAG_02989":null,"SJAG_03081":null,"SJAG_03204":null,"SJAG_03345":null,"SJAG_03464":null,"SJAG_03596":null,"SJAG_03640":null,"SJAG_04018":null,"SJAG_04026":null,"SJAG_04077":null,"SJAG_04209":null,"SJAG_04238":null,"SJAG_04266":null,"SJAG_04363":null,"SJAG_04483":null,"SJAG_04509":null,"SJAG_04583":null,"SJAG_04666":null,"SJAG_04685":null,"SJAG_04732":null,"SJAG_04789":null,"SJAG_04850":null,"SJAG_04851":null,"SJAG_04875":null,"SJAG_05207":null,"SJAG_05268":null,"SJAG_05272":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"side of membrane","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0098552","terms_by_termid":{"GO:0005834":null,"GO:0009897":null,"GO:0009898":null,"GO:0010009":null,"GO:0031234":null,"GO:0032473":null,"GO:0098552":null,"GO:0098553":null,"GO:0098554":null,"GO:0099616":null,"GO:0099617":null,"GO:0106186":null}}


id: PBO:0077864
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tropomyosin 3 pseudogene 5","termid":"PBO:0077864"}


id: PBO:0086597
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Putative protein of unknown function; expression induced under calcium shortage","termid":"PBO:0086597"}


id: FYPO:0007810
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A physical cellular phenotype in which the amount, distribution, and morphology of cytoplasmic microtubules is normal (i.e. indistinguishable from wild type) during a cellular response to a pheromone.","definition_xrefs":["PMID:11950884","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal cytoplasmic microtubules","termid":"FYPO:0007809"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000257"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0000257"],"is_obsolete":false,"name":"normal cytoplasmic microtubules during cellular response to pheromone","synonyms":[{"name":"normal cytoplasmic microtubule morphology during cellular response to pheromone","type":"exact"},{"name":"normal cytoplasmic microtubule structure during cellular response to pheromone","type":"narrow"},{"name":"normal cytoplasmic microtubules during mating projection formation","type":"related"},{"name":"normal cytoplasmic microtubules during response to pheromone","type":"exact"},{"name":"normal microtubules during cellular response to pheromone","type":"exact"}],"termid":"FYPO:0007810"}


id: PBO:0052592
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"karyopherin subunit alpha 2 pseudogene 1","termid":"PBO:0052592"}


id: GO:1903543
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of exosomal secretion.","definition_xrefs":["GO_REF:0000058","GOC:TermGenie","PMID:24105262"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of cellular component biogenesis","termid":"GO:0044089"},{"relation_name":"is_a","term_name":"positive regulation of exocytosis","termid":"GO:0045921"},{"relation_name":"is_a","term_name":"regulation of exosomal secretion","termid":"GO:1903541"},{"relation_name":"positively_regulates","term_name":"exosomal secretion","termid":"GO:1990182"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"positively_regulates","termid":"GO:0006810"},{"rel_name":"regulates","termid":"GO:0016192"},{"rel_name":"regulates","termid":"GO:0044085"},{"rel_name":"positively_regulates","termid":"GO:0016192"},{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"positively_regulates","termid":"GO:0044085"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0016192","GO:0044085","GO:0006810","GO:0008150"],"is_obsolete":false,"name":"positive regulation of exosomal secretion","synonyms":[{"name":"activation of exosomal protein secretion","type":"narrow"},{"name":"activation of exosomal secretion","type":"narrow"},{"name":"activation of exosomal secretory pathway","type":"narrow"},{"name":"activation of extracellular vesicular exosome secretion","type":"narrow"},{"name":"activation of secretion of exosome","type":"narrow"},{"name":"positive regulation of exosomal protein secretion","type":"narrow"},{"name":"positive regulation of exosomal secretory pathway","type":"exact"},{"name":"positive regulation of extracellular vesicular exosome secretion","type":"exact"},{"name":"positive regulation of secretion of exosome","type":"exact"},{"name":"up regulation of exosomal protein secretion","type":"narrow"},{"name":"up regulation of exosomal secretion","type":"exact"},{"name":"up regulation of exosomal secretory pathway","type":"exact"},{"name":"up regulation of extracellular vesicular exosome secretion","type":"exact"},{"name":"up regulation of secretion of exosome","type":"exact"},{"name":"up-regulation of exosomal protein secretion","type":"narrow"},{"name":"up-regulation of exosomal secretion","type":"exact"},{"name":"up-regulation of exosomal secretory pathway","type":"exact"},{"name":"up-regulation of extracellular vesicular exosome secretion","type":"exact"},{"name":"up-regulation of secretion of exosome","type":"exact"},{"name":"upregulation of exosomal protein secretion","type":"narrow"},{"name":"upregulation of exosomal secretion","type":"exact"},{"name":"upregulation of exosomal secretory pathway","type":"exact"},{"name":"upregulation of extracellular vesicular exosome secretion","type":"exact"},{"name":"upregulation of secretion of exosome","type":"exact"}],"termid":"GO:1903543"}


id: PBO:0064328
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PLS1 pseudogene 1","termid":"PBO:0064328"}


id: PBO:0076302
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SYNGAP1 antisense RNA 1","termid":"PBO:0076302"}


id: PR:P05219
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- nda3 gene.","definition_xrefs":["PRO:DNx","UniProtKB:P05219"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tubulin beta chain (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC26H8.07c","synonyms":[{"name":"Spom972h-nda3","type":"exact"},{"name":"beta-tubulin (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:P05219"}


id: PBO:0049266
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"gasdermin E","termid":"PBO:0049266"}


id: PBO:0041237
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chromosome 1 open reading frame 94","termid":"PBO:0041237"}


id: GO:0032199
data:
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id: GO:0043565
data:
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id: PBO:0091134
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial ribosomal protein subunit L53","termid":"PBO:0091134"}


id: PBO:0013742
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  {"annotation_feature_type":"gene","cv_name":"feature_relationshipprop_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"interaction_note","termid":"PBO:0013742"}


id: GO:0051157
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of arabitol, the pentitol derived from arabinose or lyxose by reduction of the aldehyde group.","definition_xrefs":["ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pentitol catabolic process","termid":"GO:0019527"},{"relation_name":"is_a","term_name":"arabitol metabolic process","termid":"GO:0051161"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005975"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0044281","GO:0005975","GO:0008150"],"is_obsolete":false,"name":"arabitol catabolic process","secondary_identifiers":["GO:0019591"],"synonyms":[{"name":"arabitol breakdown","type":"exact"},{"name":"arabitol catabolism","type":"exact"},{"name":"arabitol degradation","type":"exact"},{"name":"arabitol utilization","type":"related"}],"termid":"GO:0051157"}


id: PATO:0002299
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  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A cylindrical shape that is hollow.","definition_xrefs":["PATOC:GVG"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cylindrical","termid":"PATO:0001873"},{"relation_name":"is_a","term_name":"hollow","termid":"PATO:0002078"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tubular","synonyms":[{"name":"tube like","type":"exact"},{"name":"tube-shaped","type":"exact"},{"name":"tubulate","type":"exact"}],"termid":"PATO:0002299"}


id: PBO:0083021
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  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Deleted ORF; does not encode a protein; included in the original annotation of Chromosome III but deleted due to sequence correction","termid":"PBO:0083021"}


id: GO:0006600
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving creatine (N-(aminoiminomethyl)-N-methylglycine), a compound synthesized from the amino acids arginine, glycine, and methionine that occurs in muscle.","definition_xrefs":["ISBN:0192801023","GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular modified amino acid metabolic process","termid":"GO:0006575"},{"relation_name":"is_a","term_name":"monocarboxylic acid metabolic process","termid":"GO:0032787"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0044281","GO:0008150"],"is_obsolete":false,"name":"creatine metabolic process","synonyms":[{"name":"creatine metabolism","type":"exact"}],"termid":"GO:0006600"}


id: SO:0000142
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  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A folded DNA sequence.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"sequence_secondary_structure","termid":"SO:0000002"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DNA_sequence_secondary_structure","synonyms":[{"name":"DNA sequence secondary structure","type":"exact"}],"termid":"SO:0000142"}


id: GO:0060360
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that decreases the rate, frequency or extent of leucine import as a result of an ammonium ion stimulus. Leucine import is the directed movement of leucine into a cell or organelle.","definition_xrefs":["GOC:tb","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of L-leucine import across plasma membrane","termid":"GO:1905533"},{"relation_name":"part_of","term_name":"cellular response to ammonium ion","termid":"GO:0071242"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"negatively_regulates","termid":"GO:0006810"},{"rel_name":"negatively_regulates","termid":"GO:0055085"},{"rel_name":"regulates","termid":"GO:0055085"}],"interesting_parent_ids":["GO:0055085","GO:0008150","GO:0006810"],"is_obsolete":false,"name":"negative regulation of leucine import in response to ammonium ion","synonyms":[{"name":"negative regulation of leucine uptake in response to ammonium ion","type":"exact"}],"termid":"GO:0060360"}


id: PBO:0015248
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ER associated protein disulfide isomerase Pdi3","termid":"PBO:0015248"}


id: PBO:0086644
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the Golgi","termid":"PBO:0086644"}


id: GO:1902570
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process in which a protein is transported to, or maintained in, a location within a nucleolus.","definition_xrefs":["PMID:22809626","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein localization to nucleus","termid":"GO:0034504"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0051179"],"is_obsolete":false,"name":"protein localization to nucleolus","synonyms":[{"name":"protein localisation in nucleolus","type":"exact"},{"name":"protein localisation to nucleolus","type":"exact"},{"name":"protein localization in nucleolus","type":"exact"}],"termid":"GO:1902570"}


id: PBO:0077710
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"troponin T3, fast skeletal type","termid":"PBO:0077710"}


id: GO:0006315
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Lateral transfer of a group II intron to a homologous allele that lacks the intron, mediated by a site-specific endonuclease encoded within the mobile intron; group II introns are self-splicing introns with a conserved secondary structure.","definition_xrefs":["ISBN:0716743663","GOC:mcc","PMID:10487208"],"direct_ancestors":[{"relation_name":"is_a","term_name":"intron homing","termid":"GO:0006314"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006259"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006310"}],"interesting_parent_ids":["GO:0008150","GO:0006310","GO:0006259"],"is_obsolete":false,"name":"homing of group II introns","termid":"GO:0006315"}


id: GO:0044410
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Penetration by a symbiont into a host organism via naturally occurring openings in the host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction.","definition_xrefs":["GOC:cc"],"gene_count":0,"genotype_count":0,"name":"obsolete entry into host through natural portals (obsolete GO:0044410)","synonyms":[{"name":"entry into other organism through natural portals during symbiotic interaction","type":"related"},{"name":"entry into other organism through natural portals involved in symbiotic interaction","type":"related"}],"termid":"GO:0044410"}


id: PBO:0034517
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  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_number_of_unattached_kinetochores","termid":"PBO:0034517"}


id: PR:O94259
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  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- utp16 gene.","definition_xrefs":["PRO:DNx","UniProtKB:O94259"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"U3 small nucleolar RNA-associated protein 16 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBP8B7.10c","synonyms":[{"name":"Spom972h-utp16","type":"exact"},{"name":"U3 snoRNA-associated protein 16 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:O94259"}


id: PBO:0027698
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-mRNA_absent_from_cell","termid":"PBO:0027698"}


id: GO:0002952
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction (4S)-4-hydroxy-5-phosphonooxypentane-2,3-dione = 3-hydroxy-5-phosphonooxypentane-2,4-dione.","definition_xrefs":["EC:5.3.1.32"],"direct_ancestors":[{"relation_name":"is_a","term_name":"isomerase activity","termid":"GO:0016853"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016853"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0016853","GO:0003824"],"is_obsolete":false,"name":"(4S)-4-hydroxy-5-phosphonooxypentane-2,3-dione isomerase activity","synonyms":[{"name":"phospho-AI-2 isomerase activity","type":"related"}],"termid":"GO:0002952"}


id: FYECO:0000069
data:
  {"annotation_feature_type":"gene","cv_name":"fission_yeast_phenotype_condition","definition":"An experimental condition in which caffeine was added to the medium or assay buffer in excess compared to standard medium or assay buffers.","definition_xrefs":["PomBase:al"],"direct_ancestors":[{"relation_name":"is_a","term_name":"grouping excess","termid":"FYECO:0000109"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"+ caffeine","termid":"FYECO:0000069"}


id: FYPO:0001144
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of Man8GlcNAc2 measured in a cell is lower than normal. Man8GlcNAc2 is any N-glycan that consists of a branched ten-membered mannooligosaccharide containing eight D-mannosyl residues and two N-acetylglucosamine residues.","definition_xrefs":["CHEBI:64052","CHEBI:64048","PomBase:mah","PMID:12686557"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased polysaccharide level during vegetative growth","termid":"FYPO:0001080"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0001985","FYPO:0000002"],"is_obsolete":false,"name":"decreased Man8GlcNAc level","synonyms":[{"name":"decreased Man8GlcNAc accumulation","type":"related"},{"name":"decreased Man8GlcNAc level during mitotic cell cycle","type":"related"},{"name":"decreased Man8GlcNAc level during vegetative growth","type":"exact"},{"name":"decreased Man8GlcNAc2 level","type":"exact"},{"name":"decreased cellular Man8GlcNAc level","type":"exact"},{"name":"reduced Man8GlcNAc level","type":"exact"}],"termid":"FYPO:0001144"}


id: GO:0044420
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"OBSOLETE. Any constituent part of the extracellular matrix, the structure lying external to one or more cells, which provides structural support for cells or tissues; may be completely external to the cell (as in animals) or be part of the cell (as often seen in plants).","definition_xrefs":["GOC:jl"],"gene_count":0,"genotype_count":0,"name":"obsolete extracellular matrix component (obsolete GO:0044420)","synonyms":[{"name":"extracellular matrix part","type":"exact"}],"termid":"GO:0044420"}


id: PBO:0071827
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein S2 pseudogene 22","termid":"PBO:0071827"}


id: PATO:0000851
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0000851 absolute auditory threshold (obsolete PATO:0000851)","termid":"PATO:0000851"}


id: PBO:0029788
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-signal_recognition_particles_present_in_decreased_numbers","termid":"PBO:0029788"}


id: PBO:0034153
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-in_deep_homology_relationship_with","termid":"PBO:0034153"}


id: PBO:0029237
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_actomyosin_contractile_ring_disassembly","termid":"PBO:0029237"}


id: PBO:0091929
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"short chain dehydrogenase, unknown specificity","termid":"PBO:0091929"}


id: PR:P50527
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- shk1 gene.","definition_xrefs":["PRO:DNx","UniProtKB:P50527"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"serine/threonine-protein kinase shk1/pak1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC1604.14c","synonyms":[{"name":"Spom972h-shk1","type":"exact"}],"termid":"PR:P50527"}


id: PBO:0047301
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"phenylalanyl-tRNA synthetase 2, mitochondrial","termid":"PBO:0047301"}


id: PR:Q9P7E9
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPAC14C4.15c gene.","definition_xrefs":["UniProtKB:Q9P7E9","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dipeptidyl aminopeptidase C14C4.15c (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC14C4.15c","synonyms":[{"name":"Spom972h-SPAC14C4.15c","type":"exact"}],"termid":"PR:Q9P7E9"}


id: GO:0008661
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: D-glyceraldehyde 3-phosphate + H+ + pyruvate = 1-deoxy-D-xylulose 5-phosphate + CO2.","definition_xrefs":["EC:2.2.1.7","RHEA:12605"],"direct_ancestors":[{"relation_name":"is_a","term_name":"transketolase or transaldolase activity","termid":"GO:0016744"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016744"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016740","GO:0016744"],"is_obsolete":false,"name":"1-deoxy-D-xylulose-5-phosphate synthase activity","secondary_identifiers":["MetaCyc:DXS-RXN","KEGG_REACTION:R05636"],"synonyms":[{"name":"1-deoxy-D-xylulose-5-phosphate pyruvate-lyase (carboxylating) activity","type":"exact"},{"name":"1-deoxyxylulose-5-phosphate synthase activity","type":"exact"},{"name":"DOXP synthase activity","type":"exact"},{"name":"DXP-synthase activity","type":"exact"},{"name":"pyruvate:D-glyceraldehyde-3-phosphate acetaldehydetransferase (decarboxylating)","type":"related"}],"termid":"GO:0008661"}


id: FYPO:0000142
data:
  {"alleles_by_uniquename":{"SJAG_01956:allele-1":{"allele_type":"amino_acid_mutation","description":"E405K ts","gene_uniquename":"SJAG_01956","name":"nuc2-1051","uniquename":"SJAG_01956:allele-1"},"SJAG_02621:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_02621","name":"ago1delta","uniquename":"SJAG_02621:allele-1"},"SJAG_03118:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_03118","name":"leo1delta","uniquename":"SJAG_03118:allele-1"},"SJAG_03351:allele-1":{"allele_type":"amino_acid_mutation","description":"A186T ts","gene_uniquename":"SJAG_03351","name":"cut23-415","uniquename":"SJAG_03351:allele-1"},"SJAG_03575:allele-1":{"allele_type":"amino_acid_mutation","description":"E548K ts","gene_uniquename":"SJAG_03575","name":"apc2-361","uniquename":"SJAG_03575:allele-1"},"SJAG_03689:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_03689","name":"dcr1delta","uniquename":"SJAG_03689:allele-1"}},"annotation_feature_type":"genotype","cv_annotations":{"multi_locus_phenotype":[{"annotations":[115582,115584],"is_not":false,"rel_names":["output_of"],"summary":null,"term":"FYPO:0004982"},{"annotations":[115583,115585],"is_not":false,"rel_names":["output_of"],"summary":null,"term":"FYPO:0004573"}],"single_locus_phenotype":[{"annotations":[115568],"is_not":false,"rel_names":["output_of"],"summary":null,"term":"FYPO:0004205"},{"annotations":[115570],"is_not":false,"rel_names":["output_of"],"summary":null,"term":"FYPO:0004982"},{"annotations":[115274,115272,115273],"is_not":false,"rel_names":["output_of"],"summary":null,"term":"FYPO:0001327"},{"annotations":[115569],"is_not":false,"rel_names":["output_of"],"summary":null,"term":"FYPO:0004574"}]},"cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype that affects gene expression. Gene expression includes transcription, RNA processing, and, for protein-coding genes, translation and protein maturation.","definition_xrefs":["GO:0010467","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular metabolism phenotype","termid":"FYPO:0000140"}],"gene_count":6,"genes_by_uniquename":{"SJAG_01956":null,"SJAG_02621":null,"SJAG_03118":null,"SJAG_03198":null,"SJAG_03351":null,"SJAG_03575":null,"SJAG_03689":null},"genotype_count":6,"genotypes_by_uniquename":{"ago1delta__leo1delta":{"display_name":"ago1delta leo1delta","display_uniquename":"ago1delta__leo1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_02621:allele-1","expression":"Null"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_03118:allele-1","expression":"Null"}]}]},"apc2-361-E548K_ts-amino_acid_mutation-expression-not_assayed_or_wild_type":{"display_name":"apc2-361(E548K ts)","display_uniquename":"apc2-361-E548K_ts-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03575:allele-1","expression":"Not assayed or wild type"}]}]},"cut23-415-A186T_ts-amino_acid_mutation-expression-not_assayed_or_wild_type":{"display_name":"cut23-415(A186T ts)","display_uniquename":"cut23-415-A186T_ts-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03351:allele-1","expression":"Not assayed or wild type"}]}]},"dcr1delta":{"display_name":"dcr1delta","display_uniquename":"dcr1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03689:allele-1","expression":"Null"}]}]},"dcr1delta__leo1delta":{"display_name":"dcr1delta leo1delta","display_uniquename":"dcr1delta__leo1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03689:allele-1","expression":"Null"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_03118:allele-1","expression":"Null"}]}]},"nuc2-1051-E405K_ts-amino_acid_mutation-expression-not_assayed_or_wild_type":{"display_name":"nuc2-1051(E405K ts)","display_uniquename":"nuc2-1051-E405K_ts-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01956:allele-1","expression":"Not assayed or wild type"}]}]}},"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0000002"],"is_obsolete":false,"multi_locus_annotated_genes":["SJAG_02621","SJAG_03689","SJAG_03118"],"name":"gene expression phenotype","references_by_uniquename":{"PMID:23786411":null,"PMID:35226668":null},"single_locus_annotated_genes":["SJAG_01956","SJAG_03351","SJAG_03689","SJAG_03575"],"single_locus_genotype_uniquenames":["cut23-415-A186T_ts-amino_acid_mutation-expression-not_assayed_or_wild_type","dcr1delta","nuc2-1051-E405K_ts-amino_acid_mutation-expression-not_assayed_or_wild_type","apc2-361-E548K_ts-amino_acid_mutation-expression-not_assayed_or_wild_type"],"synonyms":[{"name":"fission yeast gene expression phenotype","type":"exact"}],"termid":"FYPO:0000142","terms_by_termid":{"FYECO:0000005":null,"FYECO:0000006":null,"FYECO:0000137":null,"FYECO:0000162":null,"FYPO:0001327":null,"FYPO:0004205":null,"FYPO:0004573":null,"FYPO:0004574":null,"FYPO:0004982":null,"FYPO_EXT:0000001":null}}


id: PBO:0086217
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein that binds tRNA and methionyl- and glutamyl-tRNA synthetases; involved in tRNA delivery, stimulating catalysis, and ensuring localization; also binds quadruplex nucleic acids; protein abundance increases in response to DNA replication stress; methionyl-tRNA synthetase is Mes1p; glutamyl-tRNA synthetase is Gus1p","termid":"PBO:0086217"}


id: PBO:0041278
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"C1q and TNF related 4","termid":"PBO:0041278"}


id: GO:1901752
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of leukotriene A4.","definition_xrefs":["GOC:TermGenie","GOC:yaf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"leukotriene catabolic process","termid":"GO:0036100"},{"relation_name":"is_a","term_name":"long-chain fatty acid catabolic process","termid":"GO:0042758"},{"relation_name":"is_a","term_name":"heterocycle catabolic process","termid":"GO:0046700"},{"relation_name":"is_a","term_name":"organic cyclic compound catabolic process","termid":"GO:1901361"},{"relation_name":"is_a","term_name":"ether catabolic process","termid":"GO:1901502"},{"relation_name":"is_a","term_name":"icosanoid catabolic process","termid":"GO:1901523"},{"relation_name":"is_a","term_name":"leukotriene A4 metabolic process","termid":"GO:1901751"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006629"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0044248"}],"interesting_parent_ids":["GO:0006629","GO:0008150","GO:0044281","GO:0044248"],"is_obsolete":false,"name":"leukotriene A4 catabolic process","synonyms":[{"name":"leukotriene A4 breakdown","type":"exact"},{"name":"leukotriene A4 catabolism","type":"exact"},{"name":"leukotriene A4 degradation","type":"exact"}],"termid":"GO:1901752"}


id: PBO:0027374
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_glutathione_transferase_activity","termid":"PBO:0027374"}


id: SO:0000067
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","direct_ancestors":[{"relation_name":"is_a","term_name":"gene_attribute","termid":"SO:0000401"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"gene_to_gene_feature","synonyms":[{"name":"gene to gene feature","type":"exact"}],"termid":"SO:0000067"}


id: GO:0043988
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The modification of histone H3 by the addition of an phosphate group to a serine residue at position 28 of the histone.","definition_xrefs":["GOC:jl"],"gene_count":0,"genotype_count":0,"name":"obsolete histone H3-S28 phosphorylation (obsolete GO:0043988)","synonyms":[{"name":"histone H3 phosphorylation at S28","type":"exact"},{"name":"histone H3S28 phosphorylation","type":"exact"}],"termid":"GO:0043988"}


id: PBO:0012003
data:
  {"annotation_feature_type":"gene","cv_name":"warning","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"non-consensus GAG acceptor","termid":"PBO:0012003"}


id: PBO:0062660
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 13 subfamily D member 1","termid":"PBO:0062660"}


id: GO:0047997
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 3-hydroxypyruvate + H+ = CO2 + glycolaldehyde.","definition_xrefs":["EC:4.1.1.40","RHEA:20561"],"direct_ancestors":[{"relation_name":"is_a","term_name":"carboxy-lyase activity","termid":"GO:0016831"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016829"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016829"],"is_obsolete":false,"name":"hydroxypyruvate decarboxylase activity","secondary_identifiers":["MetaCyc:HYDROXYPYRUVATE-DECARBOXYLASE-RXN","KEGG_REACTION:R01393"],"synonyms":[{"name":"hydroxypyruvate carboxy-lyase (glycolaldehyde-forming)","type":"related"},{"name":"hydroxypyruvate carboxy-lyase activity","type":"related"}],"termid":"GO:0047997"}


id: PBO:0080291
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"vomeronasal 1 receptor 55 pseudogene","termid":"PBO:0080291"}


id: PBO:0110511
data:
  {"annotation_feature_type":"gene","cv_name":"name_description","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ANKyrin repeats","termid":"PBO:0110511"}


id: GO:0070254
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The regulated release of mucus by the mucosa. Mucus is a viscous slimy secretion consisting of mucins and various inorganic salts dissolved in water, with suspended epithelial cells and leukocytes. The mucosa, or mucous membrane, is the membrane covered with epithelium that lines the tubular organs of the body. Mucins are carbohydrate-rich glycoproteins that have a lubricating and protective function.","definition_xrefs":["ISBN:068340007X","ISBN:0721662544","GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"body fluid secretion","termid":"GO:0007589"},{"relation_name":"is_a","term_name":"secretion by tissue","termid":"GO:0032941"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0051179","GO:0006810","GO:0008150"],"is_obsolete":false,"name":"mucus secretion","synonyms":[{"name":"mucus production","type":"exact"}],"termid":"GO:0070254"}


id: GO:0042670
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which a relatively unspecialized cell acquires the specialized features of a retinal cone cell.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"camera-type eye photoreceptor cell differentiation","termid":"GO:0060219"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"retinal cone cell differentiation","termid":"GO:0042670"}


id: PBO:0027654
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-cut_during_cellular_response_to_ionizing_radiation_during_mitotic_S_phase","termid":"PBO:0027654"}


id: GO:1903567
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of protein localization to ciliary membrane.","definition_xrefs":["GOC:cilia","GOC:krc","GOC:TermGenie","PMID:22072986","GO_REF:0000058"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of protein localization to cilium","termid":"GO:1903564"},{"relation_name":"is_a","term_name":"regulation of protein localization to cell periphery","termid":"GO:1904375"},{"relation_name":"is_a","term_name":"regulation of protein localization to membrane","termid":"GO:1905475"},{"relation_name":"regulates","term_name":"protein localization to ciliary membrane","termid":"GO:1903441"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of protein localization to ciliary membrane","synonyms":[{"name":"regulation of protein localisation in ciliary membrane","type":"exact"},{"name":"regulation of protein localisation to ciliary membrane","type":"exact"},{"name":"regulation of protein localization in ciliary membrane","type":"exact"}],"termid":"GO:1903567"}


id: GO:1904028
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of collagen fibril organization.","definition_xrefs":["GO_REF:0000058","GOC:TermGenie","PMID:25451920"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of supramolecular fiber organization","termid":"GO:1902905"},{"relation_name":"is_a","term_name":"positive regulation of extracellular matrix organization","termid":"GO:1903055"},{"relation_name":"is_a","term_name":"regulation of collagen fibril organization","termid":"GO:1904026"},{"relation_name":"positively_regulates","term_name":"collagen fibril organization","termid":"GO:0030199"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of collagen fibril organization","synonyms":[{"name":"activation of collagen fibril organisation","type":"narrow"},{"name":"activation of collagen fibril organization","type":"narrow"},{"name":"activation of fibrillar collagen organization","type":"narrow"},{"name":"positive regulation of collagen fibril organisation","type":"exact"},{"name":"positive regulation of fibrillar collagen organization","type":"exact"},{"name":"up regulation of collagen fibril organisation","type":"exact"},{"name":"up regulation of collagen fibril organization","type":"exact"},{"name":"up regulation of fibrillar collagen organization","type":"exact"},{"name":"up-regulation of collagen fibril organisation","type":"exact"},{"name":"up-regulation of collagen fibril organization","type":"exact"},{"name":"up-regulation of fibrillar collagen organization","type":"exact"},{"name":"upregulation of collagen fibril organisation","type":"exact"},{"name":"upregulation of collagen fibril organization","type":"exact"},{"name":"upregulation of fibrillar collagen organization","type":"exact"}],"termid":"GO:1904028"}


id: PBO:0029549
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_level_of_nitrogen_starvation_gene_mRNA_during_vegetative_growth","termid":"PBO:0029549"}


id: GO:0042421
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of norepinephrine, a hormone secreted by the adrenal medulla, and a neurotransmitter in the sympathetic peripheral nervous system and in some tracts in the central nervous system. It is also the demethylated biosynthetic precursor of epinephrine.","definition_xrefs":["ISBN:0198506732","GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"norepinephrine metabolic process","termid":"GO:0042415"},{"relation_name":"is_a","term_name":"catecholamine biosynthetic process","termid":"GO:0042423"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"norepinephrine biosynthetic process","synonyms":[{"name":"levarterenol biosynthesis","type":"exact"},{"name":"levarterenol biosynthetic process","type":"exact"},{"name":"noradrenaline biosynthesis","type":"exact"},{"name":"noradrenaline biosynthetic process","type":"exact"},{"name":"norepinephrine anabolism","type":"exact"},{"name":"norepinephrine biosynthesis","type":"exact"},{"name":"norepinephrine formation","type":"exact"},{"name":"norepinephrine synthesis","type":"exact"}],"termid":"GO:0042421"}


id: PBO:0080731
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"WWC family member 3","termid":"PBO:0080731"}


id: FYECO:0000385
data:
  {"annotation_feature_type":"gene","cv_name":"fission_yeast_phenotype_condition","definition":"An experimental condition in which fluconazole was added to the medium or assay buffer in excess compared to standard medium or assay buffers.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"grouping excess","termid":"FYECO:0000109"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"+ fluconazole","termid":"FYECO:0000385"}


id: GO:0007183
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The aggregation, arrangement and bonding together of a set of components to form a protein complex that contains SMAD proteins.","definition_xrefs":["GOC:isa_complete"],"gene_count":0,"genotype_count":0,"name":"obsolete SMAD protein complex assembly (obsolete GO:0007183)","synonyms":[{"name":"SMAD protein heteromerization","type":"narrow"}],"termid":"GO:0007183"}


id: FYECO:0000402
data:
  {"annotation_feature_type":"gene","cv_name":"fission_yeast_phenotype_condition","definition":"An experimental condition in which xylose was added to the medium or assay buffer in excess compared to standard medium or assay buffers.","definition_xrefs":["PomBase:al"],"direct_ancestors":[{"relation_name":"is_a","term_name":"grouping excess","termid":"FYECO:0000109"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"xylose added","termid":"FYECO:0000402"}


id: GO:0010400
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving the side chains of the pectin, rhamnogalacturonan I.","definition_xrefs":["GOC:tair_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"rhamnogalacturonan I metabolic process","termid":"GO:0010395"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005975"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0071554"}],"interesting_parent_ids":["GO:0071554","GO:0008150","GO:0005975"],"is_obsolete":false,"name":"rhamnogalacturonan I side chain metabolic process","synonyms":[{"name":"rhamnogalacturonan I side chain metabolism","type":"exact"}],"termid":"GO:0010400"}


