# terms

id: PATO:0000217
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0000217 immune function (obsolete PATO:0000217)","termid":"PATO:0000217"}


id: PR:O13961
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- cut11 gene.","definition_xrefs":["PRO:DNx","UniProtKB:O13961"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nuclear envelope protein ndc1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC1786.03","synonyms":[{"name":"Spom972h-cut11","type":"exact"},{"name":"cell untimely torn protein 11 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:O13961"}


id: GO:0062111
data:
  {"annotated_genes":["SJAG_01803","SJAG_03528","SJAG_01078","SJAG_00328"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[86674,100497],"is_not":false,"summary":null,"term":"GO:0062111"},{"annotations":[89977,89978],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0140209"},{"annotations":[100496,86673],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1904257"}]},"cv_name":"biological_process","definition":"The directed import of zinc(2+) from the cytosol, across an organelle membrane, into the organelle.","definition_xrefs":["PMID:29529046"],"direct_ancestors":[{"relation_name":"is_a","term_name":"zinc ion transmembrane transport","termid":"GO:0071577"}],"gene_count":4,"genes_by_uniquename":{"SJAG_00328":null,"SJAG_01078":null,"SJAG_01803":null,"SJAG_03528":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0055085"},{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0055085","GO:0008150","GO:0051179","GO:0006810"],"is_obsolete":false,"name":"zinc ion import into organelle","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0062111","terms_by_termid":{"GO:0062111":null,"GO:0140209":null,"GO:1904257":null}}


id: GO:0061762
data:
  {"annotated_genes":["SJAG_03501","SJAG_03486","SJAG_03802"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[112325,112661,114360],"is_not":false,"summary":null,"term":"GO:0061762"}]},"cv_name":"biological_process","definition":"The series of molecular signals in which calmodulin-dependent protein kinase activity enabled by a CAMKK directly activates an AMPK. The cascade begins with calmodulin binding calcium which in turn binds CAMKK enabling its calmodulin-dependent protein kinase activity. The cascade ends with AMP-activated protein kinase activity.","definition_xrefs":["PMID:23010169","GOC:pad","PMID:24709372","GOC:dph","GOC:PARL"],"direct_ancestors":[{"relation_name":"is_a","term_name":"calcium-mediated signaling","termid":"GO:0019722"},{"relation_name":"is_a","term_name":"calmodulin dependent kinase signaling pathway","termid":"GO:0099004"}],"gene_count":3,"genes_by_uniquename":{"SJAG_03486":null,"SJAG_03501":null,"SJAG_03802":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"CAMKK-AMPK signaling cascade","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"stress-activated AMP-activated protein kinase signaling cascade","type":"related"}],"termid":"GO:0061762","terms_by_termid":{"GO:0061762":null}}


id: GO:0016760
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: UDP-glucose + ((1,4)-beta-D-glucosyl)(n) = UDP + ((1,4)-beta-D-glucosyl)(n+1).","definition_xrefs":["EC:2.4.1.12"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellulose synthase activity","termid":"GO:0016759"},{"relation_name":"is_a","term_name":"UDP-glucosyltransferase activity","termid":"GO:0035251"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016757"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0016740","GO:0003824","GO:0016757"],"is_obsolete":false,"name":"cellulose synthase (UDP-forming) activity","secondary_identifiers":["MetaCyc:CELLULOSE-SYNTHASE-UDP-FORMING-RXN","RHEA:19929"],"synonyms":[{"name":"1,4-beta-D-glucan synthase activity","type":"related"},{"name":"1,4-beta-glucan synthase activity","type":"related"},{"name":"GS-I","type":"related"},{"name":"UDP-glucose-1,4-beta-glucan glucosyltransferase activity","type":"related"},{"name":"UDP-glucose-beta-D-glucan glucosyltransferase activity","type":"related"},{"name":"UDP-glucose-cellulose glucosyltransferase activity","type":"related"},{"name":"UDP-glucose:1,4-beta-D-glucan 4-beta-D-glucosyltransferase activity","type":"related"},{"name":"UDPglucose-beta-glucan glucosyltransferase activity","type":"related"},{"name":"UDPglucose-cellulose glucosyltransferase activity","type":"related"},{"name":"UDPglucose:1,4-beta-D-glucan 4-beta-D-glucosyltransferase activity","type":"related"},{"name":"beta-1,4-glucan synthase activity","type":"related"},{"name":"beta-1,4-glucan synthetase activity","type":"related"},{"name":"beta-1,4-glucosyltransferase activity","type":"related"},{"name":"beta-glucan synthase activity","type":"related"},{"name":"glucan synthase activity","type":"related"},{"name":"uridine diphosphoglucose-1,4-beta-glucan glucosyltransferase activity","type":"related"},{"name":"uridine diphosphoglucose-cellulose glucosyltransferase activity","type":"related"}],"termid":"GO:0016760"}


id: GO:0102644
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: monocyclic sesterterpenediol = all-trans-geranylfarnesol + H2O.","definition_xrefs":["GOC:pz","EC:4.2.1.-"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hydro-lyase activity","termid":"GO:0016836"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016829"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0016829","GO:0003824"],"is_obsolete":false,"name":"monocyclic sesterterpenediol synthase activity","secondary_identifiers":["MetaCyc:RXN-15756"],"termid":"GO:0102644"}


id: PBO:0004298
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"FANCM-MHF complex subunit Mhf1","termid":"PBO:0004298"}


id: PBO:0090753
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ubiquitin C-terminal hydrolase Ubp10","termid":"PBO:0090753"}


id: PBO:0056176
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MAF1 pseudogene 1","termid":"PBO:0056176"}


id: GO:0070784
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of the process in which cells remain attached after division and form thread-like filaments that may penetrate into a solid growth medium.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of filamentous growth of a population of unicellular organisms","termid":"GO:1900428"},{"relation_name":"regulates","term_name":"growth of unicellular organism as a thread of attached cells","termid":"GO:0070783"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of growth of unicellular organism as a thread of attached cells","termid":"GO:0070784"}


id: GO:0060619
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The orderly movement of epithelial cells within the mammary line that contributes to the formation of the mammary placode.","definition_xrefs":["GOC:dph","PMID:12558599"],"direct_ancestors":[{"relation_name":"is_a","term_name":"epithelial cell migration","termid":"GO:0010631"},{"relation_name":"part_of","term_name":"mammary placode formation","termid":"GO:0060596"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cell migration involved in mammary placode formation","termid":"GO:0060619"}


id: GO:0050766
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of phagocytosis.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of endocytosis","termid":"GO:0045807"},{"relation_name":"is_a","term_name":"regulation of phagocytosis","termid":"GO:0050764"},{"relation_name":"positively_regulates","term_name":"phagocytosis","termid":"GO:0006909"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"positively_regulates","termid":"GO:0006810"},{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"positively_regulates","termid":"GO:0016192"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0016192"}],"interesting_parent_ids":["GO:0008150","GO:0016192","GO:0006810"],"is_obsolete":false,"name":"positive regulation of phagocytosis","synonyms":[{"name":"activation of phagocytosis","type":"narrow"},{"name":"stimulation of phagocytosis","type":"narrow"},{"name":"up regulation of phagocytosis","type":"exact"},{"name":"up-regulation of phagocytosis","type":"exact"},{"name":"upregulation of phagocytosis","type":"exact"}],"termid":"GO:0050766"}


id: PBO:0071488
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L32 pseudogene 29","termid":"PBO:0071488"}


id: PR:O74456
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- pef1 gene.","definition_xrefs":["UniProtKB:O74456","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"serine/threonine-protein kinase pef1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC16C4.11","synonyms":[{"name":"PHO85 homolog (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-pef1","type":"exact"},{"name":"cyclin-dependent kinase pef1 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:O74456"}


id: PBO:0073143
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SEC23 homolog A, COPII coat complex component","termid":"PBO:0073143"}


id: PBO:0034372
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-downstream_in_neural_circuit_with","termid":"PBO:0034372"}


id: GO:0034677
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"An integrin complex that comprises one alpha7 subunit and one beta1 subunit.","definition_xrefs":["PMID:12297042"],"direct_ancestors":[{"relation_name":"is_a","term_name":"integrin complex","termid":"GO:0008305"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005886"}],"interesting_parent_ids":["GO:0005575","GO:0032991","GO:0005886"],"is_obsolete":false,"name":"integrin alpha7-beta1 complex","synonyms":[{"name":"ITGA7-ITGB1 complex","type":"narrow"},{"name":"alpha7-beta1 integrin complex","type":"exact"}],"termid":"GO:0034677"}


id: PBO:0056130
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"lymphatic vessel endothelial hyaluronan receptor 1","termid":"PBO:0056130"}


id: GO:0046760
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A viral budding that starts with formation of a membrane curvature in the host Golgi membrane.","definition_xrefs":["ISBN:0072370319","VZ:1947","GOC:bf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"viral budding","termid":"GO:0046755"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"viral budding from Golgi membrane","secondary_identifiers":["GO:0046750","GO:0046763"],"synonyms":[{"name":"Golgi membrane viral budding","type":"exact"},{"name":"Golgi membrane viral budding during viral capsid envelopment","type":"related"},{"name":"viral budding from Golgi membrane by viral capsid envelopment","type":"related"},{"name":"viral budding from Golgi membrane during viral capsid envelopment","type":"related"},{"name":"virus budding from Golgi membrane","type":"exact"},{"name":"virus budding from Golgi membrane by viral capsid envelopment","type":"related"},{"name":"virus budding from Golgi membrane during viral capsid envelopment","type":"related"}],"termid":"GO:0046760"}


id: GO:1900095
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that modulates the frequency, rate or extent of dosage compensation, by inactivation of X chromosome.","definition_xrefs":["PMID:20622855","Wikipedia:XY_sex-determination_system","GOC:mr","GOC:TermGenie"],"gene_count":0,"genotype_count":0,"name":"obsolete regulation of dosage compensation by inactivation of X chromosome (obsolete GO:1900095)","synonyms":[{"name":"regulation of Barr body formation","type":"related"},{"name":"regulation of X chromosome inactivation","type":"exact"},{"name":"regulation of chromosome inactivation","type":"broad"}],"termid":"GO:1900095"}


id: GO:0005941
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"OBSOLETE. Used as a holding place for cellular components whose precise localization is, as yet, unknown, or has not been determined by GO (the latter is the major reason for nodes to have this parent); this term should not be used for annotation of gene products.","definition_xrefs":["GOC:ma"],"gene_count":0,"genotype_count":0,"name":"obsolete unlocalized protein complex (obsolete GO:0005941)","synonyms":[{"name":"unlocalized protein complex","type":"exact"}],"termid":"GO:0005941"}


id: FYPO:0002973
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which the observed rate of ubiquitin ligase activity is increased during metaphase of the mitotic cell cycle.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased ubiquitin ligase activity","termid":"FYPO:0002972"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000707"},{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0000661"},{"rel_name":"is_a","termid":"FYPO:0000654"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0000661","FYPO:0001985","FYPO:0000652","FYPO:0000654","FYPO:0000707"],"is_obsolete":false,"name":"increased ubiquitin ligase activity during mitotic metaphase","synonyms":[{"name":"increased ubiquitin ligase activity during metaphase of mitosis","type":"exact"},{"name":"increased ubiquitin-protein ligase activity during mitotic metaphase","type":"exact"}],"termid":"FYPO:0002973"}


id: PBO:0000472
data:
  {"annotation_feature_type":"gene","cv_name":"name_description","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Meiosis specific Coiled-coil Protein","termid":"PBO:0000472"}


id: GO:0016282
data:
  {"annotated_genes":["SJAG_03147","SJAG_02995","SJAG_04891","SJAG_02263","SJAG_02628","SJAG_03472","SJAG_04981","SJAG_01117","SJAG_02376","SJAG_02164","SJAG_04744","SJAG_04900","SJAG_00662"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[86165,90980,92283,93048,93925,93982,95114,96275,101493,101786,103203,106892,107525],"is_not":false,"summary":null,"term":"GO:0016282"}]},"cv_name":"cellular_component","definition":"A protein complex composed of the 40S ribosomal subunit plus eIF1, eIF1A, eIF3, eIF5, and eIF2-GTP-bound methionyl-initiator methionine tRNA.","definition_xrefs":["PMID:16510876","PMID:29735639","PMID:15145049","PMID:25742741","GOC:hjd"],"direct_ancestors":[{"relation_name":"is_a","term_name":"translation preinitiation complex","termid":"GO:0070993"}],"gene_count":13,"genes_by_uniquename":{"SJAG_00662":null,"SJAG_01117":null,"SJAG_02164":null,"SJAG_02263":null,"SJAG_02376":null,"SJAG_02628":null,"SJAG_02995":null,"SJAG_03147":null,"SJAG_03472":null,"SJAG_04744":null,"SJAG_04891":null,"SJAG_04900":null,"SJAG_04981":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0005737"}],"interesting_parent_ids":["GO:0032991","GO:0005737","GO:0005575"],"is_obsolete":false,"name":"eukaryotic 43S preinitiation complex","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"eukaryotic 43S pre-initiation complex","type":"exact"}],"termid":"GO:0016282","terms_by_termid":{"GO:0016282":null}}


id: GO:0051309
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which paired chromosomes are physically detached from each other during female meiosis.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"female meiosis chromosome segregation","termid":"GO:0016321"},{"relation_name":"is_a","term_name":"meiotic chromosome separation","termid":"GO:0051307"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0007049"},{"rel_name":"part_of","termid":"GO:0140013"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0007049","GO:0140013","GO:0008150"],"is_obsolete":false,"name":"female meiosis chromosome separation","synonyms":[{"name":"chromosome separation during female meiosis","type":"exact"},{"name":"female meiosis chromosome resolution","type":"exact"}],"termid":"GO:0051309"}


id: MOD:01865
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively replaces a hydrogen atom of a protein N-terminal with the Applied Biosystems mTRAQ light reporter+balance group.","definition_xrefs":["OMSSA:208","Unimod:888#N-term"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mTRAQ light reporter+balance reagent acylated residue","termid":"MOD:01864"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:00649"}],"interesting_parent_ids":["MOD:00649"],"is_obsolete":false,"name":"mTRAQ light reporter+balance reagent acylated N-terminal","synonyms":[{"name":"(4-methylpiperazin-1-yl)acetyl","type":"exact"},{"name":"Applied Biosystems mTRAQ(TM) reagent","type":"related"},{"name":"mTRAQ light","type":"related"},{"name":"mTRAQ light on nterm","type":"exact"}],"termid":"MOD:01865"}


id: PBO:0066442
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"reticulophagy regulator family member 3","termid":"PBO:0066442"}


id: GO:0021662
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process that contributes to creating the structural organization of rhombomere 4. This process pertains to the physical shaping of a rudimentary structure. Rhombomeres are transverse segments of the developing rhombencephalon. Rhombomeres are lineage restricted, express different genes from one another, and adopt different developmental fates. Rhombomeres are numbered in an anterior to posterior order.","definition_xrefs":["GOC:jid","GO_REF:0000021","GOC:cls","GOC:dph","GOC:dgh"],"direct_ancestors":[{"relation_name":"is_a","term_name":"rhombomere structural organization","termid":"GO:0021595"},{"relation_name":"part_of","term_name":"rhombomere 4 morphogenesis","termid":"GO:0021661"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"rhombomere 4 structural organization","synonyms":[{"name":"rhombomere 4 structural organisation","type":"exact"}],"termid":"GO:0021662"}


id: PBO:0050043
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"major histocompatibility complex, class I, F","termid":"PBO:0050043"}


id: PBO:0110161
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA wybutosine biosynthesis protein Tyw3","termid":"PBO:0110161"}


id: FYPO:0007614
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which transcription from a promoter that contains one or more STREP motifs is normal (i.e. indistinguishable from wild type) in extent, timing, start or termination site, etc.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal transcription during vegetative growth","termid":"FYPO:0001855"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001312"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0000294"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001320","FYPO:0000257","FYPO:0000294","FYPO:0001312"],"is_obsolete":false,"name":"normal transcription from STREP promoter","synonyms":[{"name":"normal transcription from STREP promoter during mitotic cell cycle","type":"related"},{"name":"normal transcription from STREP promoter during vegetative growth","type":"exact"}],"termid":"FYPO:0007614"}


id: PBO:0076876
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"testis expressed 28","termid":"PBO:0076876"}


id: GO:0000079
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of cyclin-dependent protein serine/threonine kinase activity.","definition_xrefs":["GOC:go_curators","GOC:pr"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of protein serine/threonine kinase activity","termid":"GO:0071900"},{"relation_name":"is_a","term_name":"regulation of cyclin-dependent protein kinase activity","termid":"GO:1904029"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0007049"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0007049"],"is_obsolete":false,"name":"regulation of cyclin-dependent protein serine/threonine kinase activity","synonyms":[{"name":"regulation of CDK activity","type":"exact"},{"name":"regulation of cyclin-dependent protein kinase activity","type":"broad"}],"termid":"GO:0000079"}


id: PR:P40899
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- isp3 gene.","definition_xrefs":["PRO:DNx","UniProtKB:P40899"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sexual differentiation process protein isp3 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC1F8.05","synonyms":[{"name":"Spom972h-isp3","type":"exact"},{"name":"meiotic expression up-regulated protein 4 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:P40899"}


id: PBO:0084003
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Glycerol proton symporter of the plasma membrane; subject to glucose-induced inactivation, strongly but transiently induced when cells are subjected to osmotic shock","termid":"PBO:0084003"}


id: GO:0042633
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The cyclical phases of growth (anagen), regression (catagen), quiescence (telogen), and shedding (exogen) in the life of a hair; one of the collection or mass of filaments growing from the skin of an animal, and forming a covering for a part of the head or for any part or the whole of the body.","definition_xrefs":["PMID:12230507","GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"molting cycle","termid":"GO:0042303"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"hair cycle","termid":"GO:0042633"}


id: PBO:0084133
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Hexose transporter with moderate affinity for glucose; induced in the presence of non-fermentable carbon sources, induced by a decrease in growth rate, contains an extended N-terminal domain relative to other HXTs; HXT5 has a paralog, HXT3, that arose from the whole genome duplication","termid":"PBO:0084133"}


id: GO:0033159
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that stops, prevents or reduces the vectorial transfer of a protein from the cytoplasm into the nucleus, across the nuclear membrane.","definition_xrefs":["GOC:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete negative regulation of protein import into nucleus, translocation (obsolete GO:0033159)","synonyms":[{"name":"negative regulation of protein import into cell nucleus, translocation","type":"exact"}],"termid":"GO:0033159"}


id: PBO:0042084
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"coiled-coil domain containing 150 pseudogene 1","termid":"PBO:0042084"}


id: MOD:00010
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts a source amino acid residue to an L-alanine.","definition_xrefs":["RESID:AA0001","ChEBI:29948","PubMed:6692818","DeltaMass:0"],"direct_ancestors":[{"relation_name":"is_a","term_name":"residues isobaric at 71.037114 Da","termid":"MOD:00570"},{"relation_name":"is_a","term_name":"modified residue that can arise from different natural residues","termid":"MOD:00859"},{"relation_name":"is_a","term_name":"natural, standard, encoded residue","termid":"MOD:01441"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"L-alanine residue","synonyms":[{"name":"(2S)-2-aminopropanoic acid","type":"exact"},{"name":"2-aminopropionic acid","type":"exact"},{"name":"2-azanylpropanoic acid","type":"exact"},{"name":"Ala","type":"exact"},{"name":"L-alanine","type":"exact"},{"name":"alpha-alanine","type":"exact"},{"name":"alpha-aminopropionic acid","type":"exact"}],"termid":"MOD:00010"}


id: PBO:0110068
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"inositol pyrophosphatase Siw14","termid":"PBO:0110068"}


id: PBO:0028771
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-sensitive_to_plumbagin","termid":"PBO:0028771"}


id: FYPO:0005871
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which a cell forms a primary septum that is thinner than normal and does not extend over the entire cell division site.","definition_xrefs":["PomBase:mah","PMID:27898700"],"direct_ancestors":[{"relation_name":"has_part","term_name":"decreased primary cell septum thickness","termid":"FYPO:0003205"},{"relation_name":"is_a","term_name":"decreased primary cell septum thickness","termid":"FYPO:0003205"},{"relation_name":"is_a","term_name":"incomplete septum","termid":"FYPO:0005870"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"has_part","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"output_of","termid":"FYPO:0000631"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0000032"},{"rel_name":"has_part","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0000631","FYPO:0005447","FYPO:0000002","FYPO:0001985","FYPO:0000032","FYPO:0001320"],"is_obsolete":false,"name":"thin, incomplete primary cell septum","synonyms":[{"name":"incomplete primary cell septum with decreased thickness","type":"exact"},{"name":"incomplete primary cell septum with reduced thickness","type":"exact"},{"name":"thin, discontinuous primary septum","type":"exact"},{"name":"thin, incomplete primary cell septum during mitotic cell cycle","type":"related"},{"name":"thin, incomplete primary cell septum during vegetative growth","type":"exact"},{"name":"thin, incomplete primary septum","type":"exact"}],"termid":"FYPO:0005871"}


id: GO:0001843
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The last step in the formation of the neural tube, where the paired neural folds are brought together and fuse at the dorsal midline.","definition_xrefs":["ISBN:0878932437","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"tube closure","termid":"GO:0060606"},{"relation_name":"part_of","term_name":"primary neural tube formation","termid":"GO:0014020"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"neural tube closure","termid":"GO:0001843"}


id: GO:0001756
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The formation of mesodermal clusters that are arranged segmentally along the anterior posterior axis of an embryo.","definition_xrefs":["ISBN:0721662544"],"direct_ancestors":[{"relation_name":"is_a","term_name":"anterior/posterior pattern specification","termid":"GO:0009952"},{"relation_name":"is_a","term_name":"segmentation","termid":"GO:0035282"},{"relation_name":"is_a","term_name":"anatomical structure formation involved in morphogenesis","termid":"GO:0048646"},{"relation_name":"part_of","term_name":"chordate embryonic development","termid":"GO:0043009"},{"relation_name":"part_of","term_name":"somite development","termid":"GO:0061053"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"somitogenesis","secondary_identifiers":["Wikipedia:Somitogenesis"],"synonyms":[{"name":"formation of mesodermal clusters","type":"exact"}],"termid":"GO:0001756"}


id: GO:0015538
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: sialate(out) + H+(out) = sialate(in) + H+(in).","definition_xrefs":["TC:2.A.1.12.1"],"direct_ancestors":[{"relation_name":"is_a","term_name":"sialic acid transmembrane transporter activity","termid":"GO:0015136"},{"relation_name":"is_a","term_name":"solute:proton symporter activity","termid":"GO:0015295"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0005215"}],"interesting_parent_ids":["GO:0005215","GO:0003674","GO:0022857"],"is_obsolete":false,"name":"sialic acid:proton symporter activity","secondary_identifiers":["RHEA:28987","Reactome:R-HSA-5624239","MetaCyc:TRANS-RXN-25","Reactome:R-HSA-428585"],"synonyms":[{"name":"sialic acid permease activity","type":"related"},{"name":"sialic acid:hydrogen symporter activity","type":"exact"}],"termid":"GO:0015538"}


id: PBO:0077024
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"thioesterase superfamily member 6","termid":"PBO:0077024"}


id: PBO:0078273
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-Cys (anticodon GCA) 9-1","termid":"PBO:0078273"}


id: GO:0043203
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"Portion of the neuronal cell soma from which the axon originates.","definition_xrefs":["GOC:nln"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular anatomical entity","termid":"GO:0110165"},{"relation_name":"part_of","term_name":"axon","termid":"GO:0030424"},{"relation_name":"part_of","term_name":"neuronal cell body","termid":"GO:0043025"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"axon hillock","secondary_identifiers":["Wikipedia:Axon_hillock","NIF_Subcellular:sao627227260"],"termid":"GO:0043203"}


id: GO:0075281
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates, maintains or increases the frequency, rate or extent of uredinium development, a process that leads to the formation of a reddish, pustule-like structure formed by a rust fungus and consisting of uredospores.","definition_xrefs":["GOC:pamgo_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of spore-bearing organ development","termid":"GO:0075261"},{"relation_name":"is_a","term_name":"regulation of uredinium development","termid":"GO:0075280"},{"relation_name":"positively_regulates","term_name":"uredinium development","termid":"GO:0075279"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of uredinium development","termid":"GO:0075281"}


id: PR:000045536
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A GTP-binding nuclear protein spi1 (Schizosaccharomyces pombe) that is non-covalently bound to GDP.","definition_xrefs":["PRO:CNA","PomBase:MAH","PMID:18422602","PRO:DAN"],"direct_ancestors":[{"relation_name":"is_a","term_name":"GTP-binding nuclear protein spi1 (Schizosaccharomyces pombe)","termid":"PR:000045537"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"spi1/GDP+","pombase_gene_id":"SPBC1289.03c","synonyms":[{"name":"Ran-GDP","type":"broad"},{"name":"Spi1-GDP (Schizosaccharomyces pombe)","type":"exact"},{"name":"spi1/GDP+","type":"exact"}],"termid":"PR:000045536"}


id: PBO:0038580
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"activator of basal transcription 1 pseudogene 1","termid":"PBO:0038580"}


id: PBO:0044710
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DEAD-box helicase 10 pseudogene 1","termid":"PBO:0044710"}


id: GO:0006879
data:
  {"annotated_genes":["SJAG_00532","SJAG_00822","SJAG_02474","SJAG_04031","SJAG_02735","SJAG_04607","SJAG_04032","SJAG_04867","SJAG_02834","SJAG_04743","SJAG_04675","SJAG_04677","SJAG_01004","SJAG_03862","SJAG_01694","SJAG_00792","SJAG_02457","SJAG_00802"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[74084,85504,88508,89157,90269,92476,96661,100442,103603,110072],"is_not":false,"summary":null,"term":"GO:0006879"},{"annotations":[99977,90304,88657,90312],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0010106"},{"annotations":[99986],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0006880"},{"annotations":[108989,99979,88654,88658],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0033215"},{"annotations":[61592,106981,61343,106980],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0033214"}]},"cv_name":"biological_process","definition":"A homeostatic process involved in the maintenance of a steady state level of iron ions within a cell.","definition_xrefs":["GOC:mah","GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"intracellular monoatomic cation homeostasis","termid":"GO:0030003"},{"relation_name":"is_a","term_name":"inorganic ion homeostasis","termid":"GO:0098771"}],"gene_count":18,"genes_by_uniquename":{"SJAG_00532":null,"SJAG_00792":null,"SJAG_00802":null,"SJAG_00822":null,"SJAG_01004":null,"SJAG_01694":null,"SJAG_02457":null,"SJAG_02474":null,"SJAG_02735":null,"SJAG_02834":null,"SJAG_03862":null,"SJAG_04031":null,"SJAG_04032":null,"SJAG_04607":null,"SJAG_04675":null,"SJAG_04677":null,"SJAG_04743":null,"SJAG_04867":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0098771"}],"interesting_parent_ids":["GO:0098771","GO:0008150"],"is_obsolete":false,"name":"intracellular iron ion homeostasis","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null,"GO_REF:0000108":null},"synonyms":[{"name":"cellular iron ion homeostasis","type":"exact"},{"name":"iron homeostasis","type":"broad"}],"termid":"GO:0006879","terms_by_termid":{"GO:0006879":null,"GO:0006880":null,"GO:0010106":null,"GO:0033214":null,"GO:0033215":null}}


id: GO:0016457
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The aggregation, arrangement and bonding together of proteins on DNA to form the complex that mediates dosage compensation on the X chromosome of the heterogametic sex, ultimately resulting in a two-fold increase in transcription from this chromosome. An example of this is found in Drosophila melanogaster.","definition_xrefs":["GOC:jl"],"gene_count":0,"genotype_count":0,"name":"obsolete dosage compensation complex assembly involved in dosage compensation by hyperactivation of X chromosome (obsolete GO:0016457)","synonyms":[{"name":"dosage compensation complex assembly during dosage compensation by hyperactivation of X chromosome","type":"related"}],"termid":"GO:0016457"}


id: PBO:0084388
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Low-affinity phosphate transporter; acts upstream of Pho81p in regulation of the PHO pathway; deletion of pho84, pho87, pho89, pho90, and pho91 causes synthetic lethality; transcription independent of Pi and Pho4p activity; overexpression results in vigorous growth; PHO90 has a paralog, PHO87, that arose from the whole genome duplication","termid":"PBO:0084388"}


id: PBO:0082261
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Amino acid transporter for valine, leucine, isoleucine, and tyrosine; low-affinity tryptophan and histidine transporter; overexpression confers FK506 and FTY720 resistance; protein abundance increases in response to DNA replication stress","termid":"PBO:0082261"}


id: PBO:0086204
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein that associates with mitochondrial ribosome; SWAT-GFP and mCherry fusion proteins localize to the mitochondria; involved in maintenance of telomere length","termid":"PBO:0086204"}


id: PBO:0072424
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein S27 pseudogene 29","termid":"PBO:0072424"}


id: PBO:0087577
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Subunit of the Ada histone acetyltransferase complex; required for structural integrity of the complex; Ahc2p and Ahc1p are unique to the ADA complex and not shared with the related SAGA and SLIK complexes; Ahc2p may tether Ahc1p to the complex","termid":"PBO:0087577"}


id: PBO:0075607
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SPON1 antisense RNA 1","termid":"PBO:0075607"}


id: PBO:0087215
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"S-adenosylmethionine synthetase; catalyzes transfer of the adenosyl group of ATP to the sulfur atom of methionine; SAM1 has a paralog, SAM2, that arose from the whole genome duplication","termid":"PBO:0087215"}


id: GO:0002490
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which an antigen-presenting cell expresses a peptide antigen of endogenous origin on its cell surface in association with an MHC class Ib protein complex following intracellular transport via a pathway not requiring TAP (transporter associated with antigen processing). The peptide is typically a fragment of a larger endogenous protein which has been degraded within the cell. Class Ib here refers to non-classical class I molecules, such as those of the HLA-E gene family.","definition_xrefs":["GOC:add","PMID:15928678"],"direct_ancestors":[{"relation_name":"is_a","term_name":"antigen processing and presentation of endogenous peptide antigen via MHC class Ib via ER pathway","termid":"GO:0002488"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"antigen processing and presentation of endogenous peptide antigen via MHC class Ib via ER pathway, TAP-independent","synonyms":[{"name":"TAP-independent antigen processing and presentation of endogenous peptide antigen via MHC class Ib via ER pathway","type":"exact"},{"name":"TAP-independent endogenous peptide antigen processing and presentation via MHC class Ib via ER pathway","type":"exact"},{"name":"endogenous peptide antigen processing and presentation via MHC class Ib via ER pathway, TAP-independent","type":"exact"}],"termid":"GO:0002490"}


id: PBO:0075441
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"secreted protein acidic and cysteine rich","termid":"PBO:0075441"}


id: PBO:0057949
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 3671","termid":"PBO:0057949"}


id: PBO:0042191
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CCND2 antisense RNA 1","termid":"PBO:0042191"}


id: PBO:0085465
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Predominantly nucleolar DEAH-box ATP-dependent RNA helicase; required for 18S rRNA synthesis","termid":"PBO:0085465"}


id: PATO:0000204
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0000204 absolute locomotor_activity (obsolete PATO:0000204)","termid":"PATO:0000204"}


id: PBO:0061990
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 2 subfamily BH member 1 pseudogene","termid":"PBO:0061990"}


id: PBO:0084051
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"GTPase-activating protein for polarity-establishment protein Cdc42p; implicated in control of septin organization, pheromone response, and haploid invasive growth; regulated by Pho85p and Cdc28p; RGA2 has a paralog, RGA1, that arose from the whole genome duplication","termid":"PBO:0084051"}


id: PBO:0085510
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein component of the small (40S) ribosomal subunit; homologous to mammalian ribosomal protein S12, no bacterial homolog","termid":"PBO:0085510"}


id: PR:P78794
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein CWC15 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx","OMA:SCHPO02687","PANTHER:PTHR12718:SF2"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pre-mRNA-splicing factor cwf15 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC337.06c","secondary_identifiers":["UniProtKB:P78794"],"synonyms":[{"name":"Spom972h-CWC15","type":"exact"},{"name":"complexed with cdc5 protein 15 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:P78794"}


id: GO:0030383
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any interaction between a pathogen and its host organism.","definition_xrefs":["GOC:jl"],"gene_count":0,"genotype_count":0,"name":"obsolete host-pathogen interaction (obsolete GO:0030383)","synonyms":[{"name":"host-pathogen interaction","type":"exact"}],"termid":"GO:0030383"}


id: PBO:0051558
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"IL10RB divergent transcript","termid":"PBO:0051558"}


id: GO:1904156
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which a relatively unspecialized cell acquires the specialized features of a DN3 thymocyte. A DN3 thymocyte is a CD4-,CD8- thymocyte that is also CD44+,CD25+.","definition_xrefs":["GOC:dph","GOC:TermGenie","PMID:25398325","GO_REF:0000086"],"direct_ancestors":[{"relation_name":"is_a","term_name":"T cell differentiation in thymus","termid":"GO:0033077"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"DN3 thymocyte differentiation","termid":"GO:1904156"}


id: GO:0052112
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which an organism reduces the flow of fluid within the host xylem, the tissue in plants that carries water and nutrients up from the roots to the shoot and leaves. The host is defined as the larger of the organisms involved in a symbiotic interaction.","definition_xrefs":["PMID:28871268"],"direct_ancestors":[{"relation_name":"is_a","term_name":"symbiont-mediated disruption of host anatomical structure","termid":"GO:0052111"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"symbiont-mediated occlusion of host xylem","synonyms":[{"name":"occlusion by symbiont of host xylem","type":"exact"}],"termid":"GO:0052112"}


id: FYPO:0005916
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which nucleosome occupancy is lower than normal at tRNA genes. Nucleosome occupancy measures the tendency for DNA in a given region to be packaged into nucleosomes.","definition_xrefs":["PomBase:mah","PMID:25798942"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased nucleosome occupancy","termid":"FYPO:0004491"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000641"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0001320","FYPO:0005447","FYPO:0000002","FYPO:0000641"],"is_obsolete":false,"name":"decreased nucleosome occupancy at tRNA genes","synonyms":[{"name":"decreased nucleosome occupancy at tRNA genes during mitotic cell cycle","type":"related"},{"name":"decreased nucleosome occupancy at tRNA genes during vegetative growth","type":"exact"},{"name":"decreased nucleosome occupancy in tRNA genes","type":"exact"},{"name":"reduced nucleosome occupancy at tRNA genes","type":"exact"}],"termid":"FYPO:0005916"}


id: PBO:0068304
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ring finger protein 8","termid":"PBO:0068304"}


id: PBO:0090986
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transcription factor TFIID complex subunit Taf3","termid":"PBO:0090986"}


id: MOD:01008
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively substitutes a benzyl (phenylmethyl) group for a hydrogen atom.","definition_xrefs":["DeltaMass:0"],"direct_ancestors":[{"relation_name":"is_a","term_name":"reagent derivatized residue","termid":"MOD:00848"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"benzyl (Bzl) and benzyl ester (OBzl) modified residue","termid":"MOD:01008"}


id: PBO:0049610
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"H3 histone pseudogene 13","termid":"PBO:0049610"}


id: GO:0140679
data:
  {"annotated_genes":["SJAG_04167"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[108541],"is_not":false,"summary":null,"term":"GO:0140679"}]},"cv_name":"molecular_function","definition":"Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + Na(in) = ADP + phosphate + Na(out).","definition_xrefs":["PMID:9106203"],"direct_ancestors":[{"relation_name":"is_a","term_name":"sodium ion transmembrane transporter activity","termid":"GO:0015081"},{"relation_name":"is_a","term_name":"ATPase-coupled monoatomic cation transmembrane transporter activity","termid":"GO:0019829"},{"relation_name":"is_a","term_name":"ABC-type transporter activity","termid":"GO:0140359"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04167":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0022857"}],"interesting_parent_ids":["GO:0005215","GO:0003674","GO:0022857"],"is_obsolete":false,"name":"ABC-type sodium transporter activity","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["MetaCyc:RXN-17739","EC:7.2.2.4","TC:3.A.1.115.1","RHEA:14633"],"termid":"GO:0140679","terms_by_termid":{"GO:0140679":null}}


id: GO:0044544
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process which begins with venom being forced into an organism by the bite or sting of another organism, and ends with the activation of plasminogen into plasmin in the bitten organism. This process includes cleavage at an internal Arg-Val site to form an N-terminal A-chain and C-terminal B-chain held together by a disulfide bond, and can include further proteolytic cleavage events to remove the preactivation peptide.","definition_xrefs":["GOC:jl","GOC:fj"],"direct_ancestors":[{"relation_name":"is_a","term_name":"envenomation resulting in fibrinolysis in another organism","termid":"GO:0044484"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"envenomation resulting in plasminogen activation in another organism","synonyms":[{"name":"envenomation resulting in plasminogen activation in other organism","type":"exact"}],"termid":"GO:0044544"}


id: PBO:0062640
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 11 subfamily K member 1 pseudogene","termid":"PBO:0062640"}


id: GO:0099027
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"OBSOLETE. The component of the presynaptic endocytic zone membrane consisting of the gene products that are tethered to the membrane only by a covalently attached anchor, such as a lipid group that is embedded in the membrane. Gene products with peptide sequences that are embedded in the membrane are excluded from this grouping.","definition_xrefs":["GOC:dos"],"gene_count":0,"genotype_count":0,"name":"obsolete anchored component of presynaptic endocytic zone membrane (obsolete GO:0099027)","termid":"GO:0099027"}


id: GO:0160117
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: guanosine(6) in tRNA + S-adenosyl-L-methionine = H+ + N(2)-methylguanosine(6) in tRNA + S-adenosyl-L-homocysteine.","definition_xrefs":["EC:2.1.1.256","PMID:34669960"],"direct_ancestors":[{"relation_name":"is_a","term_name":"N-methyltransferase activity","termid":"GO:0008170"},{"relation_name":"is_a","term_name":"tRNA (guanine) methyltransferase activity","termid":"GO:0016423"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0140101"},{"rel_name":"is_a","termid":"GO:0140098"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0016741"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0140101","GO:0016741","GO:0003824","GO:0140098","GO:0016740"],"is_obsolete":false,"name":"tRNA (guanine(6)-N2)-methyltransferase activity","secondary_identifiers":["RHEA:51116"],"synonyms":[{"name":"m(2)G6 methyltransferase","type":"exact"},{"name":"methyltransferase Trm14","type":"exact"}],"termid":"GO:0160117"}


id: FYPO:0003885
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which the observed rate of NAD(P)H oxidase activity is decreased.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased oxidoreductase activity","termid":"FYPO:0000690"},{"relation_name":"is_a","term_name":"abnormal NAD(P)H oxidase activity","termid":"FYPO:0003884"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0000661"},{"rel_name":"is_a","termid":"FYPO:0000707"},{"rel_name":"is_a","termid":"FYPO:0000654"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0000707","FYPO:0000654","FYPO:0000652","FYPO:0000661","FYPO:0001985"],"is_obsolete":false,"name":"decreased NAD(P)H oxidase activity","synonyms":[{"name":"reduced NAD(P)H oxidase activity","type":"exact"}],"termid":"FYPO:0003885"}


id: PBO:0005159
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"wtf element Wtf9","termid":"PBO:0005159"}


id: PBO:0066370
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"retinol dehydrogenase 13","termid":"PBO:0066370"}


id: GO:0006948
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process of syncytia-forming cell-cell fusion, caused by a virus.","definition_xrefs":["ISBN:0781718325"],"direct_ancestors":[{"relation_name":"is_a","term_name":"modulation by virus of host cellular process","termid":"GO:0019054"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"induction by virus of host cell-cell fusion","synonyms":[{"name":"induction by virus of cell-cell fusion in host","type":"exact"},{"name":"viral-induced cell-cell fusion","type":"exact"},{"name":"viral-induced host cell-cell fusion","type":"exact"},{"name":"viral-induced membrane fusion","type":"narrow"}],"termid":"GO:0006948"}


id: PBO:0111846
data:
  {"annotation_feature_type":"gene","cv_name":"pombase_family_or_domain","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zf-ranBP","termid":"PBO:0111846"}


id: PATO:0001068
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0001068 relative strain (obsolete PATO:0001068)","termid":"PATO:0001068"}


id: PBO:0058979
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"muscular LMNA interacting protein","termid":"PBO:0058979"}


id: PR:Q9US60
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- klp3 gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q9US60"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"kinesin-like protein 3 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC1834.07","synonyms":[{"name":"Spom972h-klp3","type":"exact"},{"name":"kinesin-related protein 1 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:Q9US60"}


id: PBO:0079005
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-Thr (anticodon CGT) 5-1","termid":"PBO:0079005"}


id: PBO:0004831
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"phosphoglycerate kinase Pgk1 (predicted)","termid":"PBO:0004831"}


id: PBO:0040028
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ARMCX3 antisense RNA 1","termid":"PBO:0040028"}


id: MOD:01568
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively replaces an O3-hydrogen atom of a serine residue with the Applied Biosystems iTRAQ8plex-118 reporter+balance group.","definition_xrefs":["PubMed:18688235"],"direct_ancestors":[{"relation_name":"is_a","term_name":"iTRAQ8plex-118 reporter+balance reagent acylated residue","termid":"MOD:01563"},{"relation_name":"is_a","term_name":"iTRAQ8plex reporter+balance reagent O-acylated residue","termid":"MOD:01714"},{"relation_name":"is_a","term_name":"O3-acylated L-serine","termid":"MOD:02003"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:00649"}],"interesting_parent_ids":["MOD:00649"],"is_obsolete":false,"name":"iTRAQ8plex-118 reporter+balance reagent O3-acylated serine","synonyms":[{"name":"(4-methylpiperazin-1-yl)acetyl","type":"exact"}],"termid":"MOD:01568"}


id: GO:0070860
data:
  {"annotated_genes":["SJAG_02813","SJAG_00202","SJAG_00692"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[105347,105938,108127],"is_not":false,"summary":null,"term":"GO:0070860"}]},"cv_name":"cellular_component","definition":"A RNA polymerase I-specific transcription factor complex that is required for the transcription of rDNA by RNA polymerase I. In yeast the complex consists of Rrn6p, Rrn7p, and Rrn11p.","definition_xrefs":["PMID:8702872"],"direct_ancestors":[{"relation_name":"is_a","term_name":"RNA polymerase I transcription regulator complex","termid":"GO:0000120"}],"gene_count":3,"genes_by_uniquename":{"SJAG_00202":null,"SJAG_00692":null,"SJAG_02813":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005634"},{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0005730"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005730","GO:0005634","GO:0032991","GO:0005575"],"is_obsolete":false,"name":"RNA polymerase I core factor complex","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0070860","terms_by_termid":{"GO:0070860":null}}


id: GO:0018326
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The transient acetylation of peptidyl-cysteine to form S-acetyl-L-cysteine.","definition_xrefs":["RESID:AA0056"],"gene_count":0,"genotype_count":0,"name":"obsolete enzyme active site formation via S-acetyl-L-cysteine (obsolete GO:0018326)","termid":"GO:0018326"}


id: GO:1905206
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that activates or increases the frequency, rate or extent of cell death in response to hydrogen peroxide.","definition_xrefs":["GOC:TermGenie","GO_REF:0000058","GOC:bc","GOC:BHF_miRNA","PMID:20550618","GOC:BHF"],"gene_count":0,"genotype_count":0,"name":"obsolete positive regulation of hydrogen peroxide-induced cell death (obsolete GO:1905206)","synonyms":[{"name":"activation of cell death in response to H2O2","type":"narrow"},{"name":"activation of cell death in response to hydrogen peroxide","type":"narrow"},{"name":"activation of hydrogen peroxide-mediated cell death","type":"related"},{"name":"positive regulation of cell death in response to H2O2","type":"exact"},{"name":"positive regulation of cell death in response to hydrogen peroxide","type":"exact"},{"name":"positive regulation of hydrogen peroxide-mediated cell death","type":"related"},{"name":"up regulation of cell death in response to H2O2","type":"exact"},{"name":"up regulation of cell death in response to hydrogen peroxide","type":"exact"},{"name":"up regulation of hydrogen peroxide-mediated cell death","type":"related"},{"name":"up-regulation of cell death in response to H2O2","type":"exact"},{"name":"up-regulation of cell death in response to hydrogen peroxide","type":"exact"},{"name":"up-regulation of hydrogen peroxide-mediated cell death","type":"related"},{"name":"upregulation of cell death in response to H2O2","type":"exact"},{"name":"upregulation of cell death in response to hydrogen peroxide","type":"exact"},{"name":"upregulation of hydrogen peroxide-mediated cell death","type":"related"}],"termid":"GO:1905206"}


id: PR:O94291
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A sorting nexin-3 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sorting nexin-3 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC887.06c","secondary_identifiers":["UniProtKB:O94291"],"synonyms":[{"name":"SPBC887.06c","type":"related"},{"name":"Spom972h-SNX3","type":"exact"},{"name":"grd19","type":"related"}],"termid":"PR:O94291"}


id: PR:Q10079
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A glucose-induced degradation protein 4 homolog that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized protein C3H1.14 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC3H1.14","secondary_identifiers":["UniProtKB:Q10079"],"synonyms":[{"name":"Spom972h-GID4","type":"exact"}],"termid":"PR:Q10079"}


id: GO:0019610
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of 3-hydroxyphenylacetate, 1,3-benzenediol monoacetate, also known as resorcinol monoacetate.","direct_ancestors":[{"relation_name":"is_a","term_name":"phenol-containing compound catabolic process","termid":"GO:0019336"},{"relation_name":"is_a","term_name":"3-hydroxyphenylacetate metabolic process","termid":"GO:0019609"},{"relation_name":"is_a","term_name":"xenobiotic catabolic process","termid":"GO:0042178"},{"relation_name":"is_a","term_name":"monocarboxylic acid catabolic process","termid":"GO:0072329"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044248"}],"interesting_parent_ids":["GO:0008150","GO:0044281","GO:0044248"],"is_obsolete":false,"name":"3-hydroxyphenylacetate catabolic process","secondary_identifiers":["MetaCyc:3-HYDROXYPHENYLACETATE-DEGRADATION-PWY"],"synonyms":[{"name":"3-hydroxyphenylacetate breakdown","type":"exact"},{"name":"3-hydroxyphenylacetate catabolism","type":"exact"},{"name":"3-hydroxyphenylacetate degradation","type":"exact"}],"termid":"GO:0019610"}


id: _global:complete_evidence_for_feature
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"B is complete_evidence_for_feature A if the extent (5' and 3' boundaries) and internal boundaries of B fully support the extent and internal boundaries of A.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"evidence_for_feature","termid":"_global:evidence_for_feature"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"complete_evidence_for_feature","termid":"_global:complete_evidence_for_feature"}


id: PBO:0000802
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DNA 5' exonuclease (predicted)","termid":"PBO:0000802"}


id: PBO:0027547
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abolished_cell_population_growth_on_non-fermentable_carbon_source","termid":"PBO:0027547"}


id: PBO:0091977
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"wtf meiotic drive antidote Wtf19","termid":"PBO:0091977"}


id: PBO:0090305
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sterol transfer protein Osh6","termid":"PBO:0090305"}


id: PBO:0050681
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"heat shock protein family A (Hsp70) member 8 pseudogene 8","termid":"PBO:0050681"}


id: GO:0034222
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving chitin in a cell wall.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of cell wall macromolecule metabolic process","termid":"GO:0010981"},{"relation_name":"is_a","term_name":"regulation of chitin metabolic process","termid":"GO:0032882"},{"relation_name":"is_a","term_name":"regulation of cellular component organization","termid":"GO:0051128"},{"relation_name":"regulates","term_name":"cell wall chitin metabolic process","termid":"GO:0006037"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0005975"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0005975","GO:0008150"],"is_obsolete":false,"name":"regulation of cell wall chitin metabolic process","synonyms":[{"name":"regulation of cell wall chitin metabolism","type":"exact"}],"termid":"GO:0034222"}


id: GO:0015356
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. (Was not defined before being made obsolete).","definition_xrefs":["GOC:ai"],"gene_count":0,"genotype_count":0,"name":"obsolete monocarboxylate (lactate, pyruvate, mevalonate) uptake/efflux porter activity (obsolete GO:0015356)","synonyms":[{"name":"monocarboxylate (lactate, pyruvate, mevalonate) uptake/efflux porter activity","type":"exact"}],"termid":"GO:0015356"}


id: PBO:0085752
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein kinase; related to and functionally redundant with Elm1p and Sak1p for the phosphorylation and activation of Snf1p; functionally orthologous to LKB1, a mammalian kinase associated with Peutz-Jeghers cancer-susceptibility syndrome; TOS3 has a paralog, SAK1, that arose from the whole genome duplication","termid":"PBO:0085752"}


id: GO:2000225
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of testosterone biosynthetic process.","definition_xrefs":["GOC:obol","GOC:yaf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of steroid biosynthetic process","termid":"GO:0010894"},{"relation_name":"is_a","term_name":"negative regulation of cellular biosynthetic process","termid":"GO:0031327"},{"relation_name":"is_a","term_name":"negative regulation of small molecule metabolic process","termid":"GO:0062014"},{"relation_name":"is_a","term_name":"regulation of testosterone biosynthetic process","termid":"GO:2000224"},{"relation_name":"negatively_regulates","term_name":"testosterone biosynthetic process","termid":"GO:0061370"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0006629"},{"rel_name":"negatively_regulates","termid":"GO:0006629"},{"rel_name":"negatively_regulates","termid":"GO:0044281"},{"rel_name":"regulates","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0006629","GO:0008150","GO:0044281"],"is_obsolete":false,"name":"negative regulation of testosterone biosynthetic process","termid":"GO:2000225"}


id: PBO:0072676
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"rotatin","termid":"PBO:0072676"}


id: PBO:0045554
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dual specificity phosphatase 6","termid":"PBO:0045554"}


id: PBO:0060992
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NHERF family PDZ scaffold protein 4","termid":"PBO:0060992"}


id: PBO:0052065
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"KAT6A antisense RNA 1","termid":"PBO:0052065"}


id: GO:0004039
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: H2O + 3 H+ + urea-1-carboxylate = 2 CO2 + 2 NH4.","definition_xrefs":["EC:3.5.1.54","RHEA:19029"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides","termid":"GO:0016811"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0016810"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016810","GO:0016787"],"is_obsolete":false,"name":"allophanate hydrolase activity","secondary_identifiers":["UM-BBD_reactionID:r0848","KEGG_REACTION:R00005","MetaCyc:ALLOPHANATE-HYDROLASE-RXN"],"synonyms":[{"name":"allophanate lyase activity","type":"related"},{"name":"urea-1-carboxylate amidohydrolase activity","type":"related"}],"termid":"GO:0004039"}


id: GO:0032337
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of the regulated release of activin from a cell.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of activin secretion","termid":"GO:0032335"},{"relation_name":"is_a","term_name":"positive regulation of hormone secretion","termid":"GO:0046887"},{"relation_name":"positively_regulates","term_name":"activin secretion","termid":"GO:0032333"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0023052"},{"rel_name":"positively_regulates","termid":"GO:0006810"},{"rel_name":"positively_regulates","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0023052","GO:0006810","GO:0008150"],"is_obsolete":false,"name":"positive regulation of activin secretion","synonyms":[{"name":"activation of activin secretion","type":"narrow"},{"name":"stimulation of activin secretion","type":"narrow"},{"name":"up regulation of activin secretion","type":"exact"},{"name":"up-regulation of activin secretion","type":"exact"},{"name":"upregulation of activin secretion","type":"exact"}],"termid":"GO:0032337"}


id: GO:0004281
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the preferential cleavage of Leu-Xaa, Met-Xaa and Phe-Xaa. Hydrolyzes elastin.","definition_xrefs":["GOC:curators"],"gene_count":0,"genotype_count":0,"name":"obsolete pancreatic elastase II activity (obsolete GO:0004281)","synonyms":[{"name":"pancreatic elastase 2","type":"related"},{"name":"pancreatic elastase II activity","type":"exact"}],"termid":"GO:0004281"}


id: FYPO:0005102
data:
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id: GO:0002516
data:
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id: PBO:0067834
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 5S ribosomal pseudogene 136","termid":"PBO:0067834"}


id: GO:0019941
data:
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id: PBO:0075445
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"spastin","termid":"PBO:0075445"}


id: GO:0020013
data:
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id: PBO:0088540
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Rho-type GTPase activating protein, with zinc finger, LIM-type","termid":"PBO:0088540"}


id: GO:0141091
data:
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id: PBO:0086561
data:
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id: PBO:0029224
data:
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id: GO:0034483
data:
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id: FYPO:0005848
data:
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id: GO:0043371
data:
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id: GO:0004818
data:
  {"annotated_genes":["SJAG_03071","SJAG_03277"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[86552,97641],"is_not":false,"summary":null,"term":"GO:0004818"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: ATP + L-glutamate + tRNA(Glu) = AMP + diphosphate + L-glutamyl-tRNA(Glu).","definition_xrefs":["EC:6.1.1.17"],"direct_ancestors":[{"relation_name":"is_a","term_name":"aminoacyl-tRNA ligase activity","termid":"GO:0004812"}],"gene_count":2,"genes_by_uniquename":{"SJAG_03071":null,"SJAG_03277":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0140098"},{"rel_name":"is_a","termid":"GO:0140101"},{"rel_name":"is_a","termid":"GO:0016874"}],"interesting_parent_ids":["GO:0140098","GO:0003674","GO:0003824","GO:0016874","GO:0140101"],"is_obsolete":false,"name":"glutamate-tRNA ligase activity","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["RHEA:23540","MetaCyc:GLURS-RXN","Reactome:R-HSA-379861","Reactome:R-HSA-380216"],"synonyms":[{"name":"L-glutamate:tRNAGlu ligase (AMP-forming) activity","type":"related"},{"name":"glutamate-tRNA synthetase activity","type":"related"},{"name":"glutamic acid translase activity","type":"related"},{"name":"glutamyl-tRNA synthetase activity","type":"exact"},{"name":"glutamyl-transfer RNA synthetase activity","type":"related"},{"name":"glutamyl-transfer ribonucleate synthetase activity","type":"related"},{"name":"glutamyl-transfer ribonucleic acid synthetase activity","type":"related"}],"termid":"GO:0004818","terms_by_termid":{"GO:0004818":null}}


id: PBO:0027475
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-delayed_onset_of_age-related_vacuolar_changes","termid":"PBO:0027475"}


id: GO:0005972
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"OBSOLETE. (Was not defined before being made obsolete).","definition_xrefs":["GOC:jl"],"gene_count":0,"genotype_count":0,"name":"obsolete fibrinogen alpha chain (obsolete GO:0005972)","synonyms":[{"name":"fibrinogen alpha chain","type":"exact"}],"termid":"GO:0005972"}


id: SO:0000329
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"An mRNA with a plus 2 frameshift.","definition_xrefs":["SO:xp"],"direct_ancestors":[{"relation_name":"has_quality","term_name":"plus_2_framshift","termid":"SO:0000869"},{"relation_name":"is_a","term_name":"mRNA_with_frameshift","termid":"SO:0000108"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mRNA_with_plus_2_frameshift","synonyms":[{"name":"mRNA with plus 2 frameshift","type":"exact"}],"termid":"SO:0000329"}


id: PBO:0109188
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Golgi alpha-1,2-mannosyltransferase Omh6","termid":"PBO:0109188"}


id: PBO:0048723
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glycosyltransferase 1 domain containing 1","termid":"PBO:0048723"}


id: PBO:0084366
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Lipid-binding ER protein involved in ER-plasma membrane tethering; one of 6 proteins (Ist2p, Scs2p, Scs22p, Tcb1p, Tcb2p, Tcb3p) that connect ER to plasma membrane and regulate PI4P levels by controlling access of Sac1p phosphatase to its substrate PI4P in PM; contains 3 calcium and lipid binding domains; non-tagged protein also localizes to mitochondria; C-termini of Tcb1p, Tcb2p and Tcb3p interact; TCB1 has a paralog, TCB2, that arose from the whole genome duplication","termid":"PBO:0084366"}


id: GO:1990043
data:
  {"annotated_genes":["SJAG_01262"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[102121],"is_not":false,"summary":null,"term":"GO:1990043"}]},"cv_name":"molecular_function","definition":"Catalysis of the endonucleolytic cleavage immediately 5' to pyrimidine dimers to products with 5'-phosphate.","definition_xrefs":["PMID:9708997","GOC:al","EC:3.1.25.-"],"direct_ancestors":[{"relation_name":"is_a","term_name":"deoxyribonuclease (pyrimidine dimer) activity","termid":"GO:0033892"}],"gene_count":1,"genes_by_uniquename":{"SJAG_01262":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016788"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0140097"}],"interesting_parent_ids":["GO:0016788","GO:0003824","GO:0016787","GO:0140097","GO:0003674"],"is_obsolete":false,"name":"5' deoxyribonuclease (pyrimidine dimer) activity","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:1990043","terms_by_termid":{"GO:1990043":null}}


id: FYPO:0007392
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype in which that are aneuploid due to the presence of an extra copy of chromosome 3 lose the extra chromosome, producing haploid daughter cells, at a higher frequency than in otherwise wild-type cells.","definition_xrefs":["PMID:22737087","PomBase:jh","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal vegetative cell phenotype","termid":"FYPO:0003755"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0001985","FYPO:0000002"],"is_obsolete":false,"name":"increased loss of disomic chromosome 3","synonyms":[{"name":"increased haploidisation in presence of chromosome 3 disomy","type":"related"},{"name":"increased loss of disomic chromosome 3 during mitotic cell cycle","type":"related"},{"name":"increased loss of disomic chromosome 3 during vegetative growth","type":"exact"}],"termid":"FYPO:0007392"}


id: GO:0008935
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 2-succinylbenzoyl-CoA + H+ = 1,4-dihydroxy-2-naphthoyl-CoA + H2O.","definition_xrefs":["RHEA:26562"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxo-acid-lyase activity","termid":"GO:0016833"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016829"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016829"],"is_obsolete":false,"name":"1,4-dihydroxy-2-naphthoyl-CoA synthase activity","secondary_identifiers":["EC:4.1.3.36","KEGG_REACTION:R04150","MetaCyc:NAPHTHOATE-SYN-RXN"],"synonyms":[{"name":"DHNA synthetase activity","type":"related"},{"name":"O-succinylbenzoyl-CoA 1,4-dihydroxy-2-naphthoate-lyase (cyclizing) activity","type":"related"},{"name":"dihydroxynaphthoate synthase activity","type":"related"},{"name":"dihydroxynaphthoic acid synthetase activity","type":"related"},{"name":"naphthoate synthase activity","type":"related"}],"termid":"GO:0008935"}


id: GO:0010028
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A cyclic series of interconversions involving three xanthophylls, violoxanthin, antheraxanthin, and zeaxanthin. The xanthophyll cycle is involved in regulating energy dissipation in light harvesting complex II.","definition_xrefs":["ISBN:0122146743"],"direct_ancestors":[{"relation_name":"is_a","term_name":"xanthophyll metabolic process","termid":"GO:0016122"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006629"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0006629"],"is_obsolete":false,"name":"xanthophyll cycle","secondary_identifiers":["Wikipedia:Xanthophyll#Xanthophyll_cycle","MetaCyc:PWY-5945"],"termid":"GO:0010028"}


id: PBO:0089319
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ER resident protein acetylase Sdg1","termid":"PBO:0089319"}


id: GO:0008920
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: a lipopolysaccharide + ADP-L-glycero-beta-D-manno-heptose = a heptosylated lipopolysaccharide + ADP + H+.","definition_xrefs":["MetaCyc:RXN0-5127","MetaCyc:RXN0-5061","MetaCyc:RXN0-5122"],"direct_ancestors":[{"relation_name":"is_a","term_name":"glycosyltransferase activity","termid":"GO:0016757"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016757"},{"rel_name":"is_a","termid":"GO:0016740"}],"interesting_parent_ids":["GO:0003824","GO:0016740","GO:0003674","GO:0016757"],"is_obsolete":false,"name":"lipopolysaccharide heptosyltransferase activity","synonyms":[{"name":"LPS heptosyltransferase activity","type":"exact"}],"termid":"GO:0008920"}


id: PBO:0046529
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"endoplasmic reticulum protein 29","termid":"PBO:0046529"}


id: GO:0007453
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which the anatomical structures derived from the clypeo-labral disc are generated and organized. This includes the transformation of a clypeo-labal imaginal disc from a monolayered epithelium in the larvae of holometabolous insects into recognizable adult structures including the labrum, anterior and posterior cibarial plates, fish trap bristles, epistomal sclerite and clypeus.","definition_xrefs":["GOC:bf","ISBN:0879694238"],"direct_ancestors":[{"relation_name":"is_a","term_name":"imaginal disc morphogenesis","termid":"GO:0007560"},{"relation_name":"part_of","term_name":"clypeo-labral disc development","termid":"GO:0035213"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"clypeo-labral disc morphogenesis","synonyms":[{"name":"clypeo-labral disc metamorphosis","type":"exact"},{"name":"morphogenesis of structures derived from the clypeo-labral disc","type":"exact"}],"termid":"GO:0007453"}


id: PBO:0086338
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Pseudogenic fragment with similarity to flocculins; identified by gene-trapping, microarray-based expression analysis, and genome-wide homology searching; YHR213W-B has a paralog, YAR064W, that arose from a segmental duplication","termid":"PBO:0086338"}


id: PBO:0066696
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RecQ mediated genome instability 2","termid":"PBO:0066696"}


id: PBO:0082194
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Alkaline ceramidase; also has reverse (CoA-independent) ceramide synthase activity; catalyzes both breakdown and synthesis of phytoceramide; overexpression confers fumonisin B1 resistance; YPC1 has a paralog, YDC1, that arose from the whole genome duplication","termid":"PBO:0082194"}


id: _global:promoter_of
data:
  {"annotation_feature_type":"gene","cv_name":"SO_feature_relations","definition":"Relation between a promoter and a gene.","definition_xrefs":["PomBase:mah"],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"promoter_of","termid":"_global:promoter_of"}


id: FYPO:0003764
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A phenotype in which a spore germinates to produce a cell of normal morphology that undergoes one or two rounds of cell division, and all cells produced arrest the cell cycle with one nucleus and no septum, and then die.","definition_xrefs":["PomBase:mah","PomBase:vw"],"direct_ancestors":[{"relation_name":"is_a","term_name":"inviable after spore germination, single or double cell division, arrest with single nucleus","termid":"FYPO:0003759"},{"relation_name":"is_a","term_name":"inviable aseptate mononucleate vegetative cell","termid":"FYPO:0003763"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000004"},{"rel_name":"has_part","termid":"FYPO:0000004"},{"rel_name":"output_of","termid":"FYPO:0000032"},{"rel_name":"output_of","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"has_part","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0000631"},{"rel_name":"has_part","termid":"FYPO:0001985"},{"rel_name":"has_part","termid":"FYPO:0001320"},{"rel_name":"has_part","termid":"FYPO:0005447"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"output_of","termid":"FYPO:0000631"}],"interesting_parent_ids":["FYPO:0000032","FYPO:0001985","FYPO:0000631","FYPO:0000002","FYPO:0001320","FYPO:0005447","FYPO:0000004"],"is_obsolete":false,"name":"inviable after spore germination, single or double cell division, arrest with aseptate mononucleate cell","synonyms":[{"name":"inviable following spore germination, single or double cell division, arrest with aseptate mononucleate cell","type":"exact"},{"name":"inviable germinated spore, single or double cell division, arrest with aseptate mononucleate cell","type":"exact"},{"name":"lethal after spore germination, single or double cell division, arrest with aseptate mononucleate cell","type":"exact"}],"termid":"FYPO:0003764"}


id: PBO:0047756
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"folate hydrolase 1","termid":"PBO:0047756"}


id: PBO:0056652
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mediator complex subunit 19","termid":"PBO:0056652"}


id: PBO:0084009
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Glycogenin glucosyltransferase; self-glucosylating initiator of glycogen synthesis, also glucosylates n-dodecyl-beta-D-maltoside; similar to mammalian glycogenin; GLG2 has a paralog, GLG1, that arose from the whole genome duplication","termid":"PBO:0084009"}


id: SO:0001478
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A promoter trap construct is a type of engineered plasmid which is designed to integrate into a genome and express a reporter when inserted in close proximity to a promoter element. Promoter traps typically do not contain promoter elements and are mutagenic.","definition_xrefs":["ZFIN:dh"],"direct_ancestors":[{"relation_name":"is_a","term_name":"engineered_plasmid","termid":"SO:0000637"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"promoter_trap_construct","synonyms":[{"name":"promoter trap construct","type":"exact"}],"termid":"SO:0001478"}


id: PBO:0030540
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_cellular_cAMP_level_during_cellular_response_to_glucose_stimulus","termid":"PBO:0030540"}


id: PBO:0083501
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Dubious open reading frame; unlikely to encode a functional protein, based on available experimental and comparative sequence data; partially overlaps the verified gene YOR136W; null mutant displays increased levels of spontaneous Rad52 foci","termid":"PBO:0083501"}


id: PBO:0079763
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ubiquitin recognition factor in ER associated degradation 1","termid":"PBO:0079763"}


id: GO:0043159
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A structural framework, or 'dense core' at the interior of an acrosome. May regulate the distribution of hydrolases within the acrosome and their release during the acrosome reaction.","definition_xrefs":["PMID:9139729","PMID:8949900","GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular anatomical entity","termid":"GO:0110165"},{"relation_name":"part_of","term_name":"acrosomal vesicle","termid":"GO:0001669"},{"relation_name":"part_of","term_name":"vacuole","termid":"GO:0005773"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0031410"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"part_of","termid":"GO:0005773"}],"interesting_parent_ids":["GO:0031410","GO:0005773","GO:0005737","GO:0005575"],"is_obsolete":false,"name":"acrosomal matrix","termid":"GO:0043159"}


id: PBO:0054555
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1956","termid":"PBO:0054555"}


id: GO:0032572
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a menaquinone (vitamin K2) stimulus.","definition_xrefs":["GOC:sl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to vitamin K","termid":"GO:0032571"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"response to menaquinone","synonyms":[{"name":"response to menatetrenone","type":"exact"},{"name":"response to vitamin K2","type":"exact"}],"termid":"GO:0032572"}


id: PBO:0082553
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Central kinetochore protein and subunit of the Ctf19 complex; mutants have elevated rates of chromosome loss; orthologous to fission yeast kinetochore protein fta4","termid":"PBO:0082553"}


id: PBO:0027179
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abolished_heterochromatin_assembly_involved_in_chromatin_silencing_at_centromere_outer_repeat","termid":"PBO:0027179"}


id: PBO:0044255
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cell wall biogenesis 43 C-terminal homolog","termid":"PBO:0044255"}


id: GO:0102696
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: UDP-alpha-D-glucose + cis-zeatin = H+ + 9-(alpha-D-glucosyl)-cis-zeatin + UDP.","definition_xrefs":["EC:2.4.1.-","GOC:pz"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hexosyltransferase activity","termid":"GO:0016758"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016757"}],"interesting_parent_ids":["GO:0016740","GO:0003824","GO:0016757","GO:0003674"],"is_obsolete":false,"name":"cis-zeatin UDP glycosyltransferase activity","secondary_identifiers":["MetaCyc:RXN-4734"],"termid":"GO:0102696"}


id: GO:0030669
data:
  {"annotated_genes":["SJAG_00800","SJAG_00104","SJAG_01167","SJAG_02805"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[104524,92458,107783,107842],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0030122"}]},"cv_name":"cellular_component","definition":"The lipid bilayer surrounding a clathrin-coated endocytic vesicle.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"clathrin-coated vesicle membrane","termid":"GO:0030665"},{"relation_name":"is_a","term_name":"endocytic vesicle membrane","termid":"GO:0030666"},{"relation_name":"part_of","term_name":"clathrin-coated endocytic vesicle","termid":"GO:0045334"}],"gene_count":4,"genes_by_uniquename":{"SJAG_00104":null,"SJAG_00800":null,"SJAG_01167":null,"SJAG_02805":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0031410"}],"interesting_parent_ids":["GO:0005737","GO:0031410","GO:0005575"],"is_obsolete":false,"name":"clathrin-coated endocytic vesicle membrane","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0030669","terms_by_termid":{"GO:0030122":null}}


id: FYPO:0006712
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of acetyl-CoA measured in the cell is lower than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased cellular pentose phosphate level","termid":"FYPO:0006705"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001985","FYPO:0001320"],"is_obsolete":false,"name":"decreased cellular acetyl-CoA level","synonyms":[{"name":"decreased cellular acetyl-CoA level during mitotic cell cycle","type":"related"},{"name":"decreased cellular acetyl-CoA level during vegetative growth","type":"exact"},{"name":"reduced cellular acetyl-CoA level","type":"exact"}],"termid":"FYPO:0006712"}


id: GO:0003001
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The cellular process that creates a physical entity or change in state, i.e. a signal, that originates in one cell and is used to transfer information to another cell. This process begins with the initial formation of the signal and ends with the mature form and placement of the signal.","definition_xrefs":["GOC:dph"],"gene_count":0,"genotype_count":0,"name":"obsolete generation of a signal involved in cell-cell signaling (obsolete GO:0003001)","synonyms":[{"name":"formation of a signal","type":"broad"},{"name":"generation of a signal involved in cell-cell signaling","type":"exact"},{"name":"generation of a signal involved in cell-cell signalling","type":"exact"},{"name":"signal generation","type":"broad"}],"termid":"GO:0003001"}


id: PBO:0027846
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-swollen_multinucleate_vegetative_cell","termid":"PBO:0027846"}


id: PBO:0038380
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-has_chemical_role","termid":"PBO:0038380"}


id: GO:1903357
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of transcription initiation from RNA polymerase I promoter.","definition_xrefs":["GO_REF:0000058","GOC:TermGenie","PMID:9092673"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of transcription by RNA polymerase I","termid":"GO:0006356"},{"relation_name":"is_a","term_name":"regulation of DNA-templated transcription initiation","termid":"GO:2000142"},{"relation_name":"regulates","term_name":"transcription initiation at RNA polymerase I promoter","termid":"GO:0006361"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006355"},{"rel_name":"regulates","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0006351"}],"interesting_parent_ids":["GO:0008150","GO:0006355","GO:0006351","GO:0010467"],"is_obsolete":false,"name":"regulation of transcription initiation by RNA polymerase I","synonyms":[{"name":"regulation of transcription initiation from RNA polymerase I promoter","type":"exact"},{"name":"regulation of transcription initiation from RNA polymerase I promoter for nuclear large rRNA transcript","type":"narrow"}],"termid":"GO:1903357"}


id: PBO:0089848
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"blue light photoreceptor Wcs1","termid":"PBO:0089848"}


id: MOD:01303
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-asparagine residue to an N4-hexosaminyl-L-asparagine.","definition_xrefs":["Unimod:454#N","PubMed:11467524"],"direct_ancestors":[{"relation_name":"is_a","term_name":"N4-glycosyl-L-asparagine","termid":"MOD:00160"},{"relation_name":"is_a","term_name":"hexosaminylated residue","termid":"MOD:00876"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:00693"}],"interesting_parent_ids":["MOD:00693"],"is_obsolete":false,"name":"N4-hexosaminylated asparagine","synonyms":[{"name":"HexN","type":"related"},{"name":"Hexosamine","type":"related"}],"termid":"MOD:01303"}


id: PBO:0082718
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Component of the Paf1 complex; which associates with RNA polymerase II and is involved in histone methylation; plays a role in regulating Ty1 transposition; involved in transcription elongation as demonstrated by the G-less-based run-on (GLRO) assay","termid":"PBO:0082718"}


id: PBO:0047068
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"FAM131B antisense RNA 1","termid":"PBO:0047068"}


id: PBO:0048113
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"FUN14 domain containing 2 pseudogene 1","termid":"PBO:0048113"}


id: GO:0050286
data:
  {"annotated_genes":["SJAG_04964"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[96445],"is_not":false,"summary":null,"term":"GO:0050286"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: D-glucitol 6-phosphate + H2O = D-glucitol + phosphate.","definition_xrefs":["RHEA:24580","EC:3.1.3.50"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phosphatase activity","termid":"GO:0016791"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04964":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0016788"}],"interesting_parent_ids":["GO:0003824","GO:0016787","GO:0003674","GO:0016788"],"is_obsolete":false,"name":"sorbitol-6-phosphatase activity","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["KEGG_REACTION:R02866","MetaCyc:SORBITOL-6-PHOSPHATASE-RXN"],"synonyms":[{"name":"sorbitol-6-phosphate phosphatase activity","type":"related"},{"name":"sorbitol-6-phosphate phosphohydrolase activity","type":"related"}],"termid":"GO:0050286","terms_by_termid":{"GO:0050286":null}}


id: FYPO:0001311
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which plasmids are lost at a lower frequency than normal. Plasmid loss occurs when one or both daughter cells do not inherit copies of a plasmid from the mother cell, and may result from failure of plasmid replication or segregation.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal vegetative cell phenotype","termid":"FYPO:0003755"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001985","FYPO:0001320"],"is_obsolete":false,"name":"decreased plasmid loss","synonyms":[{"name":"decreased plasmid loss during mitotic cell cycle","type":"related"},{"name":"decreased plasmid loss during vegetative growth","type":"exact"},{"name":"reduced plasmid loss","type":"exact"}],"termid":"FYPO:0001311"}


id: PBO:0089021
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"serine/threonine protein kinase Ppk6","termid":"PBO:0089021"}


id: PBO:0045920
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"EF-hand calcium binding domain 14","termid":"PBO:0045920"}


id: PBO:0029652
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-growth_auxotrophic_for_histidine","termid":"PBO:0029652"}


id: PBO:0090883
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RSC-type complex ATPase Snf21","termid":"PBO:0090883"}


id: PBO:0067227
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 297, pseudogene","termid":"PBO:0067227"}


id: SO:0000585
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"snoRNA that is associated with guiding methylation of nucleotides. It contains two short conserved sequence motifs: C (RUGAUGA) near the 5-prime end and D (CUGA) near the 3-prime end.","direct_ancestors":[{"relation_name":"is_a","term_name":"snoRNA_encoding","termid":"SO:0000578"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"C_D_box_snoRNA_encoding","synonyms":[{"name":"C/D box snoRNA encoding","type":"exact"}],"termid":"SO:0000585"}


id: PBO:0066759
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RN7SK pseudogene 57","termid":"PBO:0066759"}


id: GO:0008712
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: ADP-D-glycero-D-manno-heptose = ADP-L-glycero-D-manno-heptose.","definition_xrefs":["EC:5.1.3.20","RHEA:17577"],"direct_ancestors":[{"relation_name":"is_a","term_name":"racemase and epimerase activity, acting on carbohydrates and derivatives","termid":"GO:0016857"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016853"}],"interesting_parent_ids":["GO:0003824","GO:0016853","GO:0003674"],"is_obsolete":false,"name":"ADP-glyceromanno-heptose 6-epimerase activity","secondary_identifiers":["MetaCyc:5.1.3.20-RXN","KEGG_REACTION:R05176"],"synonyms":[{"name":"ADP-L-glycero-D-manno-heptose 6-epimerase activity","type":"related"},{"name":"ADPglyceromanno-heptose 6-epimerase activity","type":"related"}],"termid":"GO:0008712"}


id: GO:0071825
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process in which macromolecules aggregate, disaggregate, or are modified, resulting in the formation, disassembly, or alteration of a protein-lipid complex.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein-containing complex organization","termid":"GO:0043933"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"protein-lipid complex organization","synonyms":[{"name":"protein-lipid complex subunit organisation","type":"exact"},{"name":"protein-lipid complex subunit organization","type":"exact"}],"termid":"GO:0071825"}


id: PBO:0045192
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DNAJB6 pseudogene 5","termid":"PBO:0045192"}


id: MOD:00602
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively replaces a hydrogen atom of a residue amino or imino group with an methyl group.","definition_xrefs":["PubMed:18688235"],"direct_ancestors":[{"relation_name":"is_a","term_name":"methylated residue","termid":"MOD:00427"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:00427"}],"interesting_parent_ids":["MOD:00427"],"is_obsolete":false,"name":"N-methylated residue","synonyms":[{"name":"NMeRes","type":"exact"}],"termid":"MOD:00602"}


id: PBO:0086441
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Putative lipase","termid":"PBO:0086441"}


id: PBO:0053844
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1111","termid":"PBO:0053844"}


id: GO:1901846
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of cell communication by electrical coupling involved in cardiac conduction.","definition_xrefs":["GOC:rl","GOC:TermGenie","PMID:17130302","GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of cell communication by electrical coupling","termid":"GO:0010650"},{"relation_name":"is_a","term_name":"regulation of cell communication by electrical coupling involved in cardiac conduction","termid":"GO:1901844"},{"relation_name":"positively_regulates","term_name":"cell communication by electrical coupling involved in cardiac conduction","termid":"GO:0086064"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of cell communication by electrical coupling involved in cardiac conduction","synonyms":[{"name":"activation of cell communication by electrical coupling involved in cardiac conduction","type":"narrow"},{"name":"up regulation of cell communication by electrical coupling involved in cardiac conduction","type":"exact"},{"name":"up-regulation of cell communication by electrical coupling involved in cardiac conduction","type":"exact"},{"name":"upregulation of cell communication by electrical coupling involved in cardiac conduction","type":"exact"}],"termid":"GO:1901846"}


id: GO:0008071
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Polarization of the ovarian follicle cells along the dorsal-ventral axis by a gene product encoded by somatic cells. An example of this process is found in Drosophila melanogaster.","definition_xrefs":["GOC:mtg_sensu","ISBN:0879694238"],"direct_ancestors":[{"relation_name":"is_a","term_name":"dorsal/ventral axis specification, ovarian follicular epithelium","termid":"GO:0008069"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0007163"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0007163"],"is_obsolete":false,"name":"maternal determination of dorsal/ventral axis, ovarian follicular epithelium, soma encoded","synonyms":[{"name":"maternal determination of dorsal-ventral axis, ovarian follicular epithelium, soma encoded","type":"exact"},{"name":"maternal determination of dorsal/ventral axis, follicular epithelium, soma encoded","type":"broad"},{"name":"maternal determination of dorsoventral axis, ovarian follicular epithelium, soma encoded","type":"exact"}],"termid":"GO:0008071"}


id: PR:000030002
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A serine/threonine-protein kinase Chk2 that is encoded in the genome of Schizosaccharomyces pombe.","definition_xrefs":["PRO:DAN"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein","termid":"PR:000000001"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"serine/threonine-protein kinase cds1 (Schizosaccharomyces pombe)","pombase_gene_id":"SPCC18B5.11c","synonyms":[{"name":"Spom-CHEK2","type":"exact"}],"termid":"PR:000030002"}


id: PBO:0065516
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"polypyrimidine tract binding protein 1 pseudogene","termid":"PBO:0065516"}


id: GO:0048863
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which a relatively unspecialized cell acquires specialized features of a stem cell. A stem cell is a cell that retains the ability to divide and proliferate throughout life to provide progenitor cells that can differentiate into specialized cells.","definition_xrefs":["GOC:isa_complete","CL:0000034"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell differentiation","termid":"GO:0030154"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"stem cell differentiation","secondary_identifiers":["Wikipedia:Stem_cell_differentiation"],"termid":"GO:0048863"}


id: GO:0034550
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: dimethylarsinate + 3 H+ + 2 e- = dimethylarsinous acid + H2O.","definition_xrefs":["UM-BBD_reactionID:r0838"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity","termid":"GO:0016491"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003824","GO:0016491","GO:0003674"],"is_obsolete":false,"name":"dimethylarsinate reductase activity","secondary_identifiers":["EC:1.97.1.-"],"termid":"GO:0034550"}


id: PBO:0055318
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2746","termid":"PBO:0055318"}


id: GO:1902867
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of retina development in camera-type eye.","definition_xrefs":["GO_REF:0000058","PMID:16872597","GOC:TermGenie","GOC:mr"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of developmental process","termid":"GO:0051093"},{"relation_name":"is_a","term_name":"negative regulation of multicellular organismal process","termid":"GO:0051241"},{"relation_name":"is_a","term_name":"regulation of retina development in camera-type eye","termid":"GO:1902866"},{"relation_name":"negatively_regulates","term_name":"retina development in camera-type eye","termid":"GO:0060041"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of retina development in camera-type eye","synonyms":[{"name":"down regulation of retina development in camera-style eye","type":"exact"},{"name":"down regulation of retina development in camera-type eye","type":"exact"},{"name":"down regulation of retinal development","type":"related"},{"name":"down-regulation of retina development in camera-style eye","type":"exact"},{"name":"down-regulation of retina development in camera-type eye","type":"exact"},{"name":"down-regulation of retinal development","type":"related"},{"name":"downregulation of retina development in camera-style eye","type":"exact"},{"name":"downregulation of retina development in camera-type eye","type":"exact"},{"name":"downregulation of retinal development","type":"related"},{"name":"inhibition of retina development in camera-style eye","type":"narrow"},{"name":"inhibition of retina development in camera-type eye","type":"narrow"},{"name":"inhibition of retinal development","type":"related"},{"name":"negative regulation of retina development in camera-style eye","type":"exact"},{"name":"negative regulation of retinal development","type":"related"}],"termid":"GO:1902867"}


id: GO:0051756
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The cell cycle process in which the centromeres of sister chromatids are physically detached from each other during meiosis.","definition_xrefs":["PMID:14730319","PMID:16325576","GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"centromere separation","termid":"GO:0034510"},{"relation_name":"is_a","term_name":"meiotic cell cycle process","termid":"GO:1903046"},{"relation_name":"part_of","term_name":"meiotic sister chromatid segregation","termid":"GO:0045144"},{"relation_name":"part_of","term_name":"meiotic sister chromatid separation","termid":"GO:0051757"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0140013"},{"rel_name":"part_of","termid":"GO:0007049"}],"interesting_parent_ids":["GO:0008150","GO:0140013","GO:0007049"],"is_obsolete":false,"name":"meiotic sister chromatid centromere separation","termid":"GO:0051756"}


id: PBO:0072510
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein SA pseudogene 39","termid":"PBO:0072510"}


id: PBO:0049889
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"HERC2 pseudogene 8","termid":"PBO:0049889"}


id: PBO:0091567
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"non-coding RNA, LTR associated","termid":"PBO:0091567"}


id: PBO:0001336
data:
  {"annotation_feature_type":"gene","cv_name":"gene_ex","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"expression induced by heat shock","termid":"PBO:0001336"}


id: PBO:0088733
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"meiotic double-strand break formation protrin Mde2","termid":"PBO:0088733"}


id: PR:O74547
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- bit61 gene.","definition_xrefs":["PRO:DNx","UniProtKB:O74547"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"target of rapamycin complex 2 subunit bit61 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC777.08c","synonyms":[{"name":"Spom972h-bit61","type":"exact"},{"name":"TORC2 subunit bit61 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:O74547"}


id: PBO:0086261
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein that regulates phospholipid asymmetry at plasma membrane; may act to generate normal levels of PI4P; may act together with or upstream of Stt4p; at least partially mediates proper localization of Stt4p to the plasma membrane","termid":"PBO:0086261"}


id: PBO:0085303
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Pho85p cyclin of the Pho80p subfamily; forms a functional kinase complex with Pho85p which phosphorylates Mmr1p and is regulated by Pho81p; involved in glycogen metabolism, expression is cell-cycle regulated; PCL7 has a paralog, PCL6, that arose from the whole genome duplication","termid":"PBO:0085303"}


id: PBO:0043757
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cytochrome c oxidase subunit 8A","termid":"PBO:0043757"}


id: PBO:0083749
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Essential component of the TIM23 complex; with Tim23p, contributes to the architecture and function of the import channel; may link the import motor to the core Translocase of the Inner Mitochondrial membrane (TIM23 complex)","termid":"PBO:0083749"}


id: MOD:01081
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"modification from DeltaMass","definition_xrefs":["DeltaMass:0"],"direct_ancestors":[{"relation_name":"is_a","term_name":"DeltaMass","termid":"MOD:00947"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"delta-glycosyloxy- (of lysine) or beta-glycosyloxy- (of phenylalanine or tyrosine)","termid":"MOD:01081"}


id: PBO:0058283
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 4659b","termid":"PBO:0058283"}


id: PBO:0030000
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-P-bodies_present_in_decreased_numbers","termid":"PBO:0030000"}


id: PBO:0055116
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2535","termid":"PBO:0055116"}


id: GO:0048499
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of the membrane surrounding a synaptic vesicle.","definition_xrefs":["GOC:jl","GOC:mah","PMID:10620806","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"membrane organization","termid":"GO:0061024"},{"relation_name":"part_of","term_name":"endomembrane system organization","termid":"GO:0010256"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0061024"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0061024"],"is_obsolete":false,"name":"synaptic vesicle membrane organization","synonyms":[{"name":"SLMV biogenesis","type":"narrow"},{"name":"synaptic vesicle membrane organisation","type":"exact"},{"name":"synaptic vesicle membrane organization and biogenesis","type":"related"}],"termid":"GO:0048499"}


id: GO:0170040
data:
  {"annotated_genes":["SJAG_03293","SJAG_00937","SJAG_03861","SJAG_03641","SJAG_03290","SJAG_00714","SJAG_02309","SJAG_03398","SJAG_01019","SJAG_04145","SJAG_03434","SJAG_00830","SJAG_02235","SJAG_01903","SJAG_00495","SJAG_00881","SJAG_02901","SJAG_04634","SJAG_03163","SJAG_00674","SJAG_01271","SJAG_02450","SJAG_00493"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[102956],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0019544"},{"annotations":[93547,109400],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0019547"},{"annotations":[102957,109401,93548],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0010121"},{"annotations":[102169],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006530"},{"annotations":[108010],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006533"},{"annotations":[114526,78600],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006538"},{"annotations":[84670,83694,87904],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006540"},{"annotations":[97372],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006543"},{"annotations":[94061],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006546"},{"annotations":[92603,109224,84916,83678],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0019464"},{"annotations":[107424],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0042853"},{"annotations":[108263],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0033512"},{"annotations":[99967],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006565"},{"annotations":[88969],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006562"},{"annotations":[114151,103305],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0010133"},{"annotations":[90403,99968],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006567"},{"annotations":[102962],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006572"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of any amino acid that is incorporated into protein naturally by ribosomal translation of mRNA, and that has a specific codon for translation from mRNA to protein.","definition_xrefs":["GOC:ew"],"direct_ancestors":[{"relation_name":"is_a","term_name":"carboxylic acid catabolic process","termid":"GO:0046395"},{"relation_name":"is_a","term_name":"proteinogenic amino acid metabolic process","termid":"GO:0170039"},{"relation_name":"is_a","term_name":"organonitrogen compound catabolic process","termid":"GO:1901565"}],"gene_count":23,"genes_by_uniquename":{"SJAG_00493":null,"SJAG_00495":null,"SJAG_00674":null,"SJAG_00714":null,"SJAG_00830":null,"SJAG_00881":null,"SJAG_00937":null,"SJAG_01019":null,"SJAG_01271":null,"SJAG_01903":null,"SJAG_02235":null,"SJAG_02309":null,"SJAG_02450":null,"SJAG_02901":null,"SJAG_03163":null,"SJAG_03290":null,"SJAG_03293":null,"SJAG_03398":null,"SJAG_03434":null,"SJAG_03641":null,"SJAG_03861":null,"SJAG_04145":null,"SJAG_04634":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044248"},{"rel_name":"is_a","termid":"GO:0006520"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0044281","GO:0044248","GO:0006520","GO:0008150"],"is_obsolete":false,"name":"proteinogenic amino acid catabolic process","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"synonyms":[{"name":"proteinogenic amino acid breakdown","type":"exact"},{"name":"proteinogenic amino acid catabolism","type":"exact"},{"name":"proteinogenic amino acid degradation","type":"exact"}],"termid":"GO:0170040","terms_by_termid":{"GO:0006530":null,"GO:0006533":null,"GO:0006538":null,"GO:0006540":null,"GO:0006543":null,"GO:0006546":null,"GO:0006562":null,"GO:0006565":null,"GO:0006567":null,"GO:0006572":null,"GO:0010121":null,"GO:0010133":null,"GO:0019464":null,"GO:0019544":null,"GO:0019547":null,"GO:0033512":null,"GO:0042853":null}}


id: GO:0075262
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of spore-bearing organ development, a process in which hyphae grow into special aggregates called fruiting bodies that produce new spores.","definition_xrefs":["GOC:pamgo_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of developmental process","termid":"GO:0051093"},{"relation_name":"is_a","term_name":"negative regulation of multicellular organismal process","termid":"GO:0051241"},{"relation_name":"is_a","term_name":"regulation of spore-bearing organ development","termid":"GO:0075260"},{"relation_name":"is_a","term_name":"negative regulation of reproductive process","termid":"GO:2000242"},{"relation_name":"negatively_regulates","term_name":"spore-bearing structure development","termid":"GO:0075259"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of spore-bearing organ development","termid":"GO:0075262"}


id: PBO:0017422
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-location_of","termid":"PBO:0017422"}


id: SO:0000837
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A region of UTR.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mRNA_region","termid":"SO:0000836"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"UTR_region","synonyms":[{"name":"UTR region","type":"exact"}],"termid":"SO:0000837"}


id: PBO:0048435
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"golgi brefeldin A resistant guanine nucleotide exchange factor 1","termid":"PBO:0048435"}


id: GO:0038024
data:
  {"annotated_genes":["SJAG_04598","SJAG_04196","SJAG_00785","SJAG_02120","SJAG_03270","SJAG_00357","SJAG_03976","SJAG_04569"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[86505,90462,100464,109503,109953,112526],"is_not":false,"summary":null,"term":"GO:0038024"},{"annotations":[114942,111781],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0097020"}]},"cv_name":"molecular_function","definition":"Binding specifically to a substance (cargo) to deliver it to a transport vesicle. Cargo receptors span membranes (for instance the plasma membrane or the endoplasmic reticulum membrane), binding simultaneously to cargo molecules and coat adaptors, to efficiently recruit the cargo molecules to nascent vesicles.","definition_xrefs":["PMID:27903609","PMID:15239958"],"direct_ancestors":[{"relation_name":"is_a","term_name":"molecular_function","termid":"GO:0003674"}],"gene_count":8,"genes_by_uniquename":{"SJAG_00357":null,"SJAG_00785":null,"SJAG_02120":null,"SJAG_03270":null,"SJAG_03976":null,"SJAG_04196":null,"SJAG_04569":null,"SJAG_04598":null},"genotype_count":0,"in_subsets":["mf_goslim_japonicus"],"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674"],"is_obsolete":false,"name":"cargo receptor activity","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["Reactome:R-HSA-9759209","Reactome:R-HSA-3000103","Reactome:R-HSA-3000112","Reactome:R-HSA-3000122","Reactome:R-HSA-3000137","Reactome:R-HSA-350168","Reactome:R-HSA-9759202"],"synonyms":[{"name":"endocytic receptor activity","type":"narrow"},{"name":"receptor activity","type":"broad"},{"name":"receptor activity involved in receptor-mediated endocytosis","type":"narrow"},{"name":"transport receptor activity","type":"broad"}],"termid":"GO:0038024","terms_by_termid":{"GO:0038024":null,"GO:0097020":null}}


id: PBO:0059857
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"methenyltetrahydrofolate synthetase domain containing","termid":"PBO:0059857"}


id: FYPO:0003946
data:
  {"alleles_by_uniquename":{"SJAG_01143:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_01143","name":"mid1delta","uniquename":"SJAG_01143:allele-1"},"SJAG_03596:allele-1":{"allele_type":"amino_acid_mutation","description":"L264P,P442T","gene_uniquename":"SJAG_03596","name":"cdc15-A","uniquename":"SJAG_03596:allele-1"}},"annotation_feature_type":"genotype","cv_annotations":{"multi_locus_phenotype":[{"annotations":[115487],"is_not":false,"summary":null,"term":"FYPO:0003946"}]},"cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to the site of cell division begins later than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal protein localization to cell division site","termid":"FYPO:0001401"}],"gene_count":2,"genes_by_uniquename":{"SJAG_01143":null,"SJAG_01665":null,"SJAG_03596":null},"genotype_count":1,"genotypes_by_uniquename":{"cdc15-A-L264P,P442T-amino_acid_mutation-expression-not_assayed_or_wild_type__mid1delta":{"display_name":"cdc15-A(L264P,P442T aa) mid1delta","display_uniquename":"cdc15-A-L264P,P442T-amino_acid_mutation-expression-not_assayed_or_wild_type__mid1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03596:allele-1","expression":"Not assayed or wild type"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_01143:allele-1","expression":"Null"}]}]}},"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0000002","FYPO:0005447","FYPO:0000138","FYPO:0001985"],"is_obsolete":false,"multi_locus_annotated_genes":["SJAG_03596","SJAG_01143"],"name":"delayed onset of protein localization to cell division site","references_by_uniquename":{"PMID:25866389":null},"synonyms":[{"name":"delayed onset of protein localisation to cell division site","type":"exact"},{"name":"delayed onset of protein localization to cell division site during mitotic cell cycle","type":"related"},{"name":"delayed onset of protein localization to cell division site during vegetative growth","type":"exact"},{"name":"delayed onset of protein recruitment to cell division site","type":"related"},{"name":"delayed protein localization to cell division site","type":"exact"}],"termid":"FYPO:0003946","terms_by_termid":{"FYECO:0000005":null,"FYECO:0000137":null,"FYPO:0003946":null}}


id: GO:0018644
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: toluene + H+ + NADH + O2 = 2-hydroxytoluene + H2O + NAD+.","definition_xrefs":["RHEA:20349"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen","termid":"GO:0016709"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016491","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"toluene 2-monooxygenase activity","secondary_identifiers":["MetaCyc:TOLUENE-2-MONOOXYGENASE-RXN","UM-BBD_enzymeID:e0222","EC:1.14.13.243"],"termid":"GO:0018644"}


id: FYPO:0001092
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A phenotype that affects the binding of a gene product to another substance. The affected gene product may be encoded by the mutated gene, or by a different gene.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"molecular function phenotype","termid":"FYPO:0000652"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000652"}],"interesting_parent_ids":["FYPO:0000652"],"is_obsolete":false,"name":"binding phenotype","synonyms":[{"name":"fission yeast binding phenotype","type":"exact"}],"termid":"FYPO:0001092"}


id: PBO:0076361
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SZRD1 pseudogene 1","termid":"PBO:0076361"}


id: GO:0097660
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"An SCF ubiquitin ligase complex in which the F-box protein is Cdc4 in S. cerevisiae.","definition_xrefs":["GOC:vw","PMID:9346238","GOC:jd"],"direct_ancestors":[{"relation_name":"is_a","term_name":"SCF ubiquitin ligase complex","termid":"GO:0019005"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0032991","GO:0005575"],"is_obsolete":false,"name":"SCF-Cdc4 ubiquitin ligase complex","termid":"GO:0097660"}


id: PBO:0081001
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger and BTB domain containing 39","termid":"PBO:0081001"}


id: PBO:0079047
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-Val (anticodon CAC) 3-1","termid":"PBO:0079047"}


id: PBO:0044977
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DExH-box helicase 29","termid":"PBO:0044977"}


id: PBO:0051776
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"IQCA1 antisense RNA 1","termid":"PBO:0051776"}


id: GO:0048384
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The series of molecular signals generated as a consequence of a retinoic acid receptor binding to one of its physiological ligands.","definition_xrefs":["GOC:dgh"],"direct_ancestors":[{"relation_name":"is_a","term_name":"intracellular receptor signaling pathway","termid":"GO:0030522"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"retinoic acid receptor signaling pathway","synonyms":[{"name":"RAR signaling pathway","type":"exact"},{"name":"retinoic acid receptor signalling pathway","type":"exact"}],"termid":"GO:0048384"}


id: PBO:0034045
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-developmentally_induces","termid":"PBO:0034045"}


id: PBO:0043113
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CHURC1-FNTB readthrough","termid":"PBO:0043113"}


id: PBO:0062084
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 4 subfamily A member 15","termid":"PBO:0062084"}


id: PBO:0001331
data:
  {"annotation_feature_type":"gene","cv_name":"misc","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"essential function does not appear to reside in its role in the folding or retention of misfolded proteins","termid":"PBO:0001331"}


id: FYPO:0006650
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which the observed rate of an ATP-dependent protein-DNA complex displacement activity is abnormal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal catalytic activity","termid":"FYPO:0000661"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0000661"},{"rel_name":"is_a","termid":"FYPO:0000654"},{"rel_name":"is_a","termid":"FYPO:0000707"}],"interesting_parent_ids":["FYPO:0000661","FYPO:0000707","FYPO:0001985","FYPO:0000652","FYPO:0000654"],"is_obsolete":false,"name":"abnormal ATP-dependent protein-DNA complex displacement activity","termid":"FYPO:0006650"}


id: PBO:0059162
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"myosin phosphatase Rho interacting protein pseudogene 1","termid":"PBO:0059162"}


id: PBO:0074948
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nucleolar RNA, C/D box 111B","termid":"PBO:0074948"}


id: PBO:0058798
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 7704","termid":"PBO:0058798"}


id: GO:0009526
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The double lipid bilayer enclosing a plastid and separating its contents from the rest of the cytoplasm; includes the intermembrane space.","definition_xrefs":["GOC:jy"],"direct_ancestors":[{"relation_name":"is_a","term_name":"organelle envelope","termid":"GO:0031967"},{"relation_name":"part_of","term_name":"plastid","termid":"GO:0009536"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575","GO:0005737"],"is_obsolete":false,"name":"plastid envelope","termid":"GO:0009526"}


id: SO:0000685
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"DNA region representing open chromatin structure that is hypersensitive to digestion by DNase I.","direct_ancestors":[{"relation_name":"is_a","term_name":"nuclease_hypersensitive_site","termid":"SO:0000322"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DNaseI_hypersensitive_site","synonyms":[{"name":"DHS","type":"exact"},{"name":"DNaseI hypersensitive site","type":"exact"},{"name":"INSDC_feature:regulatory","type":"broad"},{"name":"INSDC_qualifier:DNase_I_hypersensitive_site","type":"exact"}],"termid":"SO:0000685"}


id: GO:0045667
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of osteoblast differentiation.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of cell differentiation","termid":"GO:0045595"},{"relation_name":"regulates","term_name":"osteoblast differentiation","termid":"GO:0001649"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of osteoblast differentiation","termid":"GO:0045667"}


id: GO:0035059
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A protein complex that facilitates the assembly of nucleosomes on to newly synthesized DNA. In Drosophila, the complex comprises ASF1 and histones H3 and H4.","definition_xrefs":["GOC:bf","PMID:10591219"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nuclear protein-containing complex","termid":"GO:0140513"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005634"}],"interesting_parent_ids":["GO:0005575","GO:0032991","GO:0005634"],"is_obsolete":false,"name":"RCAF complex","synonyms":[{"name":"replication-coupling assembly factor complex","type":"exact"}],"termid":"GO:0035059"}


id: PBO:0045903
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"endonuclease/exonuclease/phosphatase family domain containing 1","termid":"PBO:0045903"}


id: GO:0002398
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The aggregation, arrangement and bonding together of a set of components to form an MHC class Ib protein complex. Class Ib here refers to non-classical class I molecules.","definition_xrefs":["PMID:15928678","GOC:add","PMID:15928680"],"direct_ancestors":[{"relation_name":"is_a","term_name":"MHC protein complex assembly","termid":"GO:0002396"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0065003"},{"rel_name":"part_of","termid":"GO:0044085"}],"interesting_parent_ids":["GO:0065003","GO:0008150","GO:0044085"],"is_obsolete":false,"name":"MHC class Ib protein complex assembly","termid":"GO:0002398"}


id: GO:0075318
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of ascus development, a process that leads to the formation of basidium, a sac-like structure produced by fungi of the phylum Ascomycota (sac fungi) in which sexually produced spores (ascospores), usually four or eight in number, are formed.","definition_xrefs":["GOC:pamgo_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of spore-bearing organ development","termid":"GO:0075260"},{"relation_name":"regulates","term_name":"ascus development","termid":"GO:0075317"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of ascus development","termid":"GO:0075318"}


id: PBO:0049147
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glutathione peroxidase 4","termid":"PBO:0049147"}


id: PR:O74982
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- cid2 gene.","definition_xrefs":["PRO:DNx","UniProtKB:O74982"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"caffeine-induced death protein 2 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC338.04","synonyms":[{"name":"Spom972h-cid2","type":"exact"}],"termid":"PR:O74982"}


id: PBO:0067440
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 561, pseudogene","termid":"PBO:0067440"}


id: PBO:0053165
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"LDOC1 regulator of NFKB signaling","termid":"PBO:0053165"}


id: PBO:0068901
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 143, pseudogene","termid":"PBO:0068901"}


id: PBO:0084002
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Glycerol kinase; converts glycerol to glycerol-3-phosphate; glucose repression of expression is mediated by Adr1p and Ino2p-Ino4p; derepression of expression on non-fermentable carbon sources is mediated by Opi1p and Rsf1p","termid":"PBO:0084002"}


id: PBO:0061012
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nicolin 2, pseudogene","termid":"PBO:0061012"}


id: PBO:0045106
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"diencephalon/mesencephalon homeobox 1","termid":"PBO:0045106"}


id: FYPO:0002171
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"OBSOLETE. A viability phenotype observed in the vegetative growth phase of the life cycle in which a cell is able to survive at a low temperature.","definition_xrefs":["PomBase:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete viable cell at low temperature (obsolete FYPO:0002171)","synonyms":[{"name":"cell viable at low temperature","type":"exact"},{"name":"viable cell at low temperature during mitotic cell cycle","type":"related"},{"name":"viable cell at low temperature during vegetative growth","type":"exact"}],"termid":"FYPO:0002171"}


id: GO:0009328
data:
  {"annotated_genes":["SJAG_03626","SJAG_02206"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[89829,93407],"is_not":false,"summary":null,"term":"GO:0009328"}]},"cv_name":"cellular_component","definition":"An enzyme complex that catalyzes the ligation of phenylalanine to tRNA(Phe), forming L-phenylalanyl-tRNA(Phe).","definition_xrefs":["PMID:20223217"],"direct_ancestors":[{"relation_name":"is_a","term_name":"catalytic complex","termid":"GO:1902494"},{"relation_name":"part_of","term_name":"cytoplasm","termid":"GO:0005737"}],"gene_count":2,"genes_by_uniquename":{"SJAG_02206":null,"SJAG_03626":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005737","GO:0005575","GO:0032991"],"is_obsolete":false,"name":"phenylalanine-tRNA ligase complex","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0009328","terms_by_termid":{"GO:0009328":null}}


id: GO:0071091
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A protein complex that consists of an alpha1-beta1 integrin complex bound to tissue transglutaminase.","definition_xrefs":["PMID:10684262"],"direct_ancestors":[{"relation_name":"is_a","term_name":"plasma membrane protein complex","termid":"GO:0098797"},{"relation_name":"is_a","term_name":"catalytic complex","termid":"GO:1902494"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005886"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0032991","GO:0005575","GO:0005886"],"is_obsolete":false,"name":"alpha1-beta1 integrin-tissue transglutaminase complex","synonyms":[{"name":"ITGA1-ITGB1-TGM2 complex","type":"narrow"}],"termid":"GO:0071091"}


id: GO:0003064
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which the hormones modulates the rate of heart muscle contraction. A hormone is one of a group of substances formed in very small amounts in one specialized organ or group of cells and carried (sometimes in the bloodstream) to another organ or group of cells, in the same organism, upon which they have a specific regulatory action.","definition_xrefs":["GOC:rl","GOC:mtg_cardio"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of heart rate by chemical signal","termid":"GO:0003062"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of heart rate by hormone","synonyms":[{"name":"hormonal cardiac chronotropy","type":"exact"},{"name":"regulation of the rate of heart contraction by hormone","type":"exact"}],"termid":"GO:0003064"}


id: GO:1902661
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of glucose mediated signaling pathway.","definition_xrefs":["PMID:24277933","GO_REF:0000058","GOC:TermGenie","GOC:di"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of signal transduction","termid":"GO:0009967"},{"relation_name":"is_a","term_name":"regulation of glucose mediated signaling pathway","termid":"GO:1902659"},{"relation_name":"positively_regulates","term_name":"glucose mediated signaling pathway","termid":"GO:0010255"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"positively_regulates","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"positive regulation of glucose mediated signaling pathway","synonyms":[{"name":"activation of glucose mediated signaling pathway","type":"narrow"},{"name":"activation of glucose mediated signalling","type":"narrow"},{"name":"positive regulation of glucose mediated signalling","type":"exact"},{"name":"up regulation of glucose mediated signaling pathway","type":"exact"},{"name":"up regulation of glucose mediated signalling","type":"exact"},{"name":"up-regulation of glucose mediated signaling pathway","type":"exact"},{"name":"up-regulation of glucose mediated signalling","type":"exact"},{"name":"upregulation of glucose mediated signaling pathway","type":"exact"},{"name":"upregulation of glucose mediated signalling","type":"exact"}],"termid":"GO:1902661"}


id: PBO:0061010
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"niban apoptosis regulator 3","termid":"PBO:0061010"}


id: PBO:0043126
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"calcium and integrin binding family member 4","termid":"PBO:0043126"}


id: PBO:0031373
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-mitochondrial_nucleoid_enlarged","termid":"PBO:0031373"}


id: PBO:0064661
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"peptidylprolyl isomerase A like 4D","termid":"PBO:0064661"}


id: FYPO:0007220
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which acetylation of lysine at position 9 of histone H3 in regions containing protein-coding genes is normal (i.e. indistinguishable from wild type).","definition_xrefs":["PomBase:mah","PMID:31260531"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal histone H3-K9 acetylation during vegetative growth","termid":"FYPO:0003223"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001312"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000257"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001320","FYPO:0001312","FYPO:0000257"],"is_obsolete":false,"name":"normal histone H3-K9 acetylation at protein coding gene during vegetative growth","synonyms":[{"name":"normal histone H3-K9 acetylation at protein coding gene during mitotic cell cycle","type":"related"},{"name":"normal histone H3-K9 acetylation at protein-coding gene during vegetative growth","type":"exact"},{"name":"normal histone H3K9 acetylation at protein coding gene during vegetative growth","type":"exact"}],"termid":"FYPO:0007220"}


id: PATO:0000278
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0000278 hybrid fertility (obsolete PATO:0000278)","termid":"PATO:0000278"}


id: PBO:0089501
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DNA-binding transcription factor Ace2","termid":"PBO:0089501"}


id: GO:0009153
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of purine deoxyribonucleotide, a compound consisting of deoxyribonucleoside (a purine base linked to a deoxyribose sugar) esterified with a phosphate group at either the 3' or 5'-hydroxyl group of the sugar.","definition_xrefs":["GOC:go_curators","ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"purine nucleotide biosynthetic process","termid":"GO:0006164"},{"relation_name":"is_a","term_name":"purine deoxyribonucleotide metabolic process","termid":"GO:0009151"},{"relation_name":"is_a","term_name":"2'-deoxyribonucleotide biosynthetic process","termid":"GO:0009265"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0055086"}],"interesting_parent_ids":["GO:0055086","GO:0044281","GO:0008150"],"is_obsolete":false,"name":"purine deoxyribonucleotide biosynthetic process","synonyms":[{"name":"purine deoxyribonucleotide anabolism","type":"exact"},{"name":"purine deoxyribonucleotide biosynthesis","type":"exact"},{"name":"purine deoxyribonucleotide formation","type":"exact"},{"name":"purine deoxyribonucleotide synthesis","type":"exact"}],"termid":"GO:0009153"}


id: GO:0015660
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Enables the transfer of formate from the inside of the cell to the outside of the cell across a membrane.","definition_xrefs":["GOC:mtg_transport","ISBN:0815340729"],"direct_ancestors":[{"relation_name":"is_a","term_name":"formate transmembrane transporter activity","termid":"GO:0015499"},{"relation_name":"is_a","term_name":"efflux transmembrane transporter activity","termid":"GO:0015562"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0022857"}],"interesting_parent_ids":["GO:0022857","GO:0003674","GO:0005215"],"is_obsolete":false,"name":"formate efflux transmembrane transporter activity","secondary_identifiers":["GO:0015509"],"synonyms":[{"name":"formate efflux permease activity","type":"related"}],"termid":"GO:0015660"}


id: PBO:0088788
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ATP-dependent RNA helicase Rok1","termid":"PBO:0088788"}


id: PBO:0028425
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_growth_on_sodium_fluoride","termid":"PBO:0028425"}


id: PBO:0055412
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2842","termid":"PBO:0055412"}


id: PBO:0055616
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 3055","termid":"PBO:0055616"}


id: PBO:0074719
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nucleolar RNA, H/ACA box 79","termid":"PBO:0074719"}


id: _global:contains_process
data:
  {"annotation_feature_type":"gene","cv_name":"external","definition":"[copied from inverse property 'occurs in'] b occurs_in c =def b is a process and c is a material entity or immaterial entity& there exists a spatiotemporal region r and b occupies_spatiotemporal_region r.& forall(t) if b exists_at t then c exists_at t & there exist spatial regions s and s’ where & b spatially_projects_onto s at t& c is occupies_spatial_region s’ at t& s is a proper_continuant_part_of s’ at t","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"contains_process","secondary_identifiers":["BFO:0000067"],"termid":"_global:contains_process"}


id: GO:1900489
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of [2Fe-2S] cluster assembly.","definition_xrefs":["GOC:TermGenie","GOC:pr","GOC:mengo_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of [2Fe-2S] cluster assembly","termid":"GO:1900487"},{"relation_name":"is_a","term_name":"positive regulation of iron-sulfur cluster assembly","termid":"GO:1903331"},{"relation_name":"positively_regulates","term_name":"[2Fe-2S] cluster assembly","termid":"GO:0044571"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"positively_regulates","termid":"GO:0016226"},{"rel_name":"regulates","termid":"GO:0016226"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0044085"}],"interesting_parent_ids":["GO:0008150","GO:0044085","GO:0016226"],"is_obsolete":false,"name":"positive regulation of [2Fe-2S] cluster assembly","synonyms":[{"name":"activation of 2Fe-2S cluster assembly","type":"narrow"},{"name":"activation of [2Fe-2S] cluster assembly","type":"narrow"},{"name":"activation of [2Fe-2S] cluster biosynthetic process","type":"related"},{"name":"positive regulation of 2Fe-2S cluster assembly","type":"exact"},{"name":"positive regulation of [2Fe-2S] cluster biosynthetic process","type":"related"},{"name":"up regulation of 2Fe-2S cluster assembly","type":"exact"},{"name":"up regulation of [2Fe-2S] cluster assembly","type":"exact"},{"name":"up regulation of [2Fe-2S] cluster biosynthetic process","type":"related"},{"name":"up-regulation of 2Fe-2S cluster assembly","type":"exact"},{"name":"up-regulation of [2Fe-2S] cluster assembly","type":"exact"},{"name":"up-regulation of [2Fe-2S] cluster biosynthetic process","type":"related"},{"name":"upregulation of 2Fe-2S cluster assembly","type":"exact"},{"name":"upregulation of [2Fe-2S] cluster assembly","type":"exact"},{"name":"upregulation of [2Fe-2S] cluster biosynthetic process","type":"related"}],"termid":"GO:1900489"}


id: PBO:0066524
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RGP1 homolog, RAB6A GEF complex partner 1","termid":"PBO:0066524"}


id: GO:0042470
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A tissue-specific, membrane-bounded cytoplasmic organelle within which melanin pigments are synthesized and stored. Melanosomes are synthesized in melanocyte cells.","definition_xrefs":["PMID:11584301","GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pigment granule","termid":"GO:0048770"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"is_a","termid":"GO:0031410"}],"interesting_parent_ids":["GO:0005575","GO:0005737","GO:0031410"],"is_obsolete":false,"name":"melanosome","secondary_identifiers":["Wikipedia:Melanosome"],"termid":"GO:0042470"}


id: PBO:0018161
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ATPase, involved in cytoplasmic translational initiation (predicted)","termid":"PBO:0018161"}


id: PBO:0030410
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-sensitive_to_raffinose","termid":"PBO:0030410"}


id: GO:0106381
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process which produces a purine deoxyribonucleotide from derivatives of it, without de novo synthesis.","definition_xrefs":["PMID:6605343"],"direct_ancestors":[{"relation_name":"is_a","term_name":"purine deoxyribonucleotide biosynthetic process","termid":"GO:0009153"},{"relation_name":"is_a","term_name":"purine nucleotide salvage","termid":"GO:0032261"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0055086"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0008150","GO:0044281","GO:0055086"],"is_obsolete":false,"name":"purine deoxyribonucleotide salvage","termid":"GO:0106381"}


id: PBO:0050668
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"heat shock protein family A (Hsp70) member 5","termid":"PBO:0050668"}


id: GO:2001009
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of plant-type cell wall cellulose biosynthetic process.","definition_xrefs":["GOC:mengo_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of cell wall macromolecule metabolic process","termid":"GO:0010981"},{"relation_name":"is_a","term_name":"regulation of cellulose biosynthetic process","termid":"GO:2001006"},{"relation_name":"regulates","term_name":"plant-type cell wall cellulose biosynthetic process","termid":"GO:0052324"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0005975"}],"interesting_parent_ids":["GO:0005975","GO:0008150"],"is_obsolete":false,"name":"regulation of plant-type cell wall cellulose biosynthetic process","synonyms":[{"name":"regulation of cell wall cellulose biosynthesis","type":"exact"},{"name":"regulation of cellulose biosynthesis during cell wall biosynthesis","type":"related"}],"termid":"GO:2001009"}


id: GO:1901495
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of cysteine metabolic process.","definition_xrefs":["GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of sulfur amino acid metabolic process","termid":"GO:0031336"},{"relation_name":"is_a","term_name":"negative regulation of cellular amino acid metabolic process","termid":"GO:0045763"},{"relation_name":"is_a","term_name":"regulation of cysteine metabolic process","termid":"GO:1901494"},{"relation_name":"negatively_regulates","term_name":"cysteine metabolic process","termid":"GO:0006534"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"negatively_regulates","termid":"GO:0006790"},{"rel_name":"negatively_regulates","termid":"GO:0006520"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"negatively_regulates","termid":"GO:0044281"},{"rel_name":"regulates","termid":"GO:0006790"},{"rel_name":"regulates","termid":"GO:0044281"},{"rel_name":"regulates","termid":"GO:0006520"}],"interesting_parent_ids":["GO:0006520","GO:0008150","GO:0044281","GO:0006790"],"is_obsolete":false,"name":"negative regulation of cysteine metabolic process","synonyms":[{"name":"down regulation of cysteine metabolic process","type":"exact"},{"name":"down regulation of cysteine metabolism","type":"exact"},{"name":"down-regulation of cysteine metabolic process","type":"exact"},{"name":"down-regulation of cysteine metabolism","type":"exact"},{"name":"downregulation of cysteine metabolic process","type":"exact"},{"name":"downregulation of cysteine metabolism","type":"exact"},{"name":"inhibition of cysteine metabolic process","type":"narrow"},{"name":"inhibition of cysteine metabolism","type":"narrow"},{"name":"negative regulation of cysteine metabolism","type":"exact"}],"termid":"GO:1901495"}


id: GO:1900806
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The chemical reactions and pathways resulting in the breakdown of ergot alkaloid.","definition_xrefs":["GOC:TermGenie","GOC:di"],"gene_count":0,"genotype_count":0,"name":"obsolete ergot alkaloid catabolic process (obsolete GO:1900806)","synonyms":[{"name":"ergot alkaloid breakdown","type":"exact"},{"name":"ergot alkaloid catabolism","type":"exact"},{"name":"ergot alkaloid degradation","type":"exact"},{"name":"ergot alkaloids breakdown","type":"related"},{"name":"ergot alkaloids catabolic process","type":"related"},{"name":"ergot alkaloids catabolism","type":"related"},{"name":"ergot alkaloids degradation","type":"related"}],"termid":"GO:1900806"}


id: GO:0045219
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of FasL.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of glycoprotein biosynthetic process","termid":"GO:0010559"},{"relation_name":"regulates","term_name":"FasL biosynthetic process","termid":"GO:0045210"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of FasL production","synonyms":[{"name":"regulation of FasL anabolism","type":"exact"},{"name":"regulation of FasL biosynthesis","type":"exact"},{"name":"regulation of FasL formation","type":"exact"},{"name":"regulation of FasL synthesis","type":"exact"}],"termid":"GO:0045219"}


id: PBO:0088007
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Type 2C serine/threonine protein phosphatase (PP2C); alternatively spliced to create two mRNA isoforms; protein from spliced form localizes to the mitochondria while the one from the unspliced form is localized to the nuclear envelope; activates coenzyme Q6 biosynthesis by dephosphorylation of demethoxy-Q6 hydroxylase Coq7p","termid":"PBO:0088007"}


id: GO:0046961
data:
  {"annotated_genes":["SJAG_02023","SJAG_04955","SJAG_01447","SJAG_01817","SJAG_00516","SJAG_00136","SJAG_01913","SJAG_04015","SJAG_05294","SJAG_02782","SJAG_01471","SJAG_00212","SJAG_03406","SJAG_01397"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[84290,86076,86393,88257,91862,92819,95107,96114,96191,97824,98855,100101,106073,114867],"is_not":false,"summary":null,"term":"GO:0046961"}]},"cv_name":"molecular_function","definition":"Enables the transfer of protons from one side of a membrane to the other according to the reaction: ATP + H2O + H+(in) -> ADP + phosphate + H+(out), by a rotational mechanism.","definition_xrefs":["RHEA:57721"],"direct_ancestors":[{"relation_name":"is_a","term_name":"proton transmembrane transporter activity","termid":"GO:0015078"},{"relation_name":"is_a","term_name":"ATPase-coupled monoatomic cation transmembrane transporter activity","termid":"GO:0019829"},{"relation_name":"is_a","term_name":"ATPase activity, coupled to transmembrane movement of ions, rotational mechanism","termid":"GO:0044769"}],"gene_count":14,"genes_by_uniquename":{"SJAG_00136":null,"SJAG_00212":null,"SJAG_00516":null,"SJAG_01397":null,"SJAG_01447":null,"SJAG_01471":null,"SJAG_01817":null,"SJAG_01913":null,"SJAG_02023":null,"SJAG_02782":null,"SJAG_03406":null,"SJAG_04015":null,"SJAG_04955":null,"SJAG_05294":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0022857","GO:0005215"],"is_obsolete":false,"name":"proton-transporting ATPase activity, rotational mechanism","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"ATP phosphohydrolase (H+-transporting) activity","type":"narrow"},{"name":"ATP synthase activity","type":"narrow"},{"name":"F(0)F(1)-ATPase activity","type":"narrow"},{"name":"F(1)-ATPase activity","type":"narrow"},{"name":"F(o)F(1)-ATPase activity","type":"narrow"},{"name":"F0F1-ATPase","type":"narrow"},{"name":"F1-ATPase","type":"narrow"},{"name":"FoF1-ATPase","type":"narrow"},{"name":"H+-transporting ATP synthase activity","type":"narrow"},{"name":"H+-transporting ATPase activity","type":"narrow"},{"name":"chloroplast ATPase activity","type":"narrow"},{"name":"hydrogen ion translocating A-type ATPase activity","type":"narrow"},{"name":"hydrogen ion translocating F-type ATPase activity","type":"narrow"},{"name":"hydrogen ion translocating V-type ATPase activity","type":"narrow"},{"name":"hydrogen ion transporting ATPase activity, rotational mechanism","type":"exact"},{"name":"hydrogen ion transporting two-sector ATPase activity","type":"narrow"},{"name":"mitochondrial ATPase activity","type":"narrow"}],"termid":"GO:0046961","terms_by_termid":{"GO:0046961":null}}


id: PBO:0070964
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L18 pseudogene 2","termid":"PBO:0070964"}


id: GO:1902364
data:
  {"annotated_genes":["SJAG_00883"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[103421],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1902543"}]},"cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of protein localization to spindle pole body.","definition_xrefs":["GOC:TermGenie","PMID:21131906"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of protein localization to spindle pole body","termid":"GO:1902363"},{"relation_name":"is_a","term_name":"negative regulation of protein localization","termid":"GO:1903828"},{"relation_name":"negatively_regulates","term_name":"protein localization to spindle pole body","termid":"GO:0071988"}],"gene_count":1,"genes_by_uniquename":{"SJAG_00883":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of protein localization to spindle pole body","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"down regulation of protein localisation to spindle pole body","type":"exact"},{"name":"down regulation of protein localization to spindle pole body","type":"exact"},{"name":"down-regulation of protein localisation to spindle pole body","type":"exact"},{"name":"down-regulation of protein localization to spindle pole body","type":"exact"},{"name":"downregulation of protein localisation to spindle pole body","type":"exact"},{"name":"downregulation of protein localization to spindle pole body","type":"exact"},{"name":"inhibition of protein localisation to spindle pole body","type":"narrow"},{"name":"inhibition of protein localization to spindle pole body","type":"narrow"},{"name":"negative regulation of protein localisation to spindle pole body","type":"exact"}],"termid":"GO:1902364","terms_by_termid":{"GO:1902543":null}}


id: GO:0008922
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: a long-chain fatty acid + ATP + holo-[ACP] = a long-chain fatty acyl-[ACP] + AMP + diphosphate. A long-chain fatty acid has an aliphatic tail containing 13 to 22 carbons.","definition_xrefs":["EC:6.2.1.20"],"direct_ancestors":[{"relation_name":"is_a","term_name":"fatty acid ligase activity","termid":"GO:0015645"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016874"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016874","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"long-chain fatty acid [acyl-carrier-protein] ligase activity","secondary_identifiers":["MetaCyc:ACYLACPSYNTH-RXN","GO:0010300","KEGG_REACTION:R07325","RHEA:45588"],"synonyms":[{"name":"acyl-ACP synthetase activity","type":"exact"},{"name":"acyl-[acyl-carrier-protein] synthetase activity","type":"related"},{"name":"acyl-acyl carrier protein synthetase","type":"broad"},{"name":"acyl-acyl-carrier-protein synthetase activity","type":"related"},{"name":"acyl-acyl-carrier-proteinsynthetase activity","type":"related"},{"name":"long-chain fatty acid-[acyl-carrier-protein] ligase activity","type":"exact"},{"name":"long-chain-fatty-acid-ACP ligase activity","type":"exact"},{"name":"long-chain-fatty-acid-[acyl-carrier protein] ligase activity","type":"exact"},{"name":"long-chain-fatty-acid-[acyl-carrier-protein] ligase activity","type":"exact"},{"name":"long-chain-fatty-acid-acyl-carrier-protein ligase activity","type":"related"},{"name":"long-chain-fatty-acid:acyl-carrier-protein ligase (AMP-forming) activity","type":"related"},{"name":"stearoyl-ACP synthetase activity","type":"related"}],"termid":"GO:0008922"}


id: GO:0035959
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that activates or increases the frequency, rate or extent of the glyoxylate cycle by activating or increasing the frequency, rate or extent of transcription from an RNA polymerase II promoter.","definition_xrefs":["PMID:19686338","GOC:dgf","PMID:17875938","PMID:11024040"],"gene_count":0,"genotype_count":0,"name":"obsolete positive regulation of glyoxylate cycle by positive regulation of transcription from RNA polymerase II promoter (obsolete GO:0035959)","synonyms":[{"name":"positive regulation of glyoxylate bypass by positive regulation of transcription from Pol II promoter","type":"exact"},{"name":"positive regulation of glyoxylate bypass by positive regulation of transcription from RNA polymerase II promoter","type":"exact"},{"name":"positive regulation of glyoxylate bypass by up regulation of transcription from RNA polymerase II promoter","type":"exact"},{"name":"positive regulation of glyoxylate bypass by up-regulation of transcription from RNA polymerase II promoter","type":"exact"},{"name":"positive regulation of glyoxylate bypass by upregulation of transcription from RNA polymerase II promoter","type":"exact"},{"name":"positive regulation of glyoxylate cycle by activation of transcription from RNA polymerase II promoter","type":"exact"},{"name":"positive regulation of glyoxylate cycle by positive regulation of transcription from Pol II promoter","type":"exact"},{"name":"positive regulation of glyoxylate cycle by stimulation of transcription from RNA polymerase II promoter","type":"exact"},{"name":"positive regulation of glyoxylate cycle by up regulation of transcription from RNA polymerase II promoter","type":"exact"},{"name":"positive regulation of glyoxylate cycle by up-regulation of transcription from RNA polymerase II promoter","type":"exact"},{"name":"positive regulation of glyoxylate cycle by upregulation of transcription from RNA polymerase II promoter","type":"exact"}],"termid":"GO:0035959"}


id: FYPO:0007130
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which homoserine O-acetyltransferase activity is absent.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abolished catalytic activity","termid":"FYPO:0000664"},{"relation_name":"is_a","term_name":"abnormal homoserine O-acetyltransferase activity","termid":"FYPO:0007129"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000661"},{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000707"},{"rel_name":"is_a","termid":"FYPO:0000654"}],"interesting_parent_ids":["FYPO:0000707","FYPO:0000654","FYPO:0001985","FYPO:0000661","FYPO:0000652"],"is_obsolete":false,"name":"abolished homoserine O-acetyltransferase activity","synonyms":[{"name":"homoserine O-acetyltransferase activity abolished","type":"exact"}],"termid":"FYPO:0007130"}


id: GO:0015394
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: uridine(out) + H+(out) = uridine(in) + H+(in).","definition_xrefs":["GOC:mtg_transport"],"direct_ancestors":[{"relation_name":"is_a","term_name":"uridine transmembrane transporter activity","termid":"GO:0015213"},{"relation_name":"is_a","term_name":"nucleoside:proton symporter activity","termid":"GO:0015506"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0022857"}],"interesting_parent_ids":["GO:0022857","GO:0003674","GO:0005215"],"is_obsolete":false,"name":"uridine:proton symporter activity","synonyms":[{"name":"nucleoside (uridine) permease activity","type":"related"},{"name":"uridine:hydrogen ion symporter activity","type":"exact"}],"termid":"GO:0015394"}


id: GO:0017027
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. (Was not defined before being made obsolete).","definition_xrefs":["GOC:ai"],"gene_count":0,"genotype_count":0,"name":"obsolete transmembrane receptor protein serine/threonine kinase receptor-associated protein activity (obsolete GO:0017027)","synonyms":[{"name":"transmembrane receptor protein serine/threonine kinase receptor-associated protein activity","type":"exact"}],"termid":"GO:0017027"}


id: SO:0000785
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"The region of sequence that has been inserted and is being propagated by the clone.","direct_ancestors":[{"relation_name":"is_a","term_name":"reagent","termid":"SO:0000695"},{"relation_name":"part_of","term_name":"clone_insert","termid":"SO:0000753"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cloned_region","synonyms":[{"name":"cloned region","type":"exact"},{"name":"cloned segment","type":"exact"}],"termid":"SO:0000785"}


id: PBO:0052976
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"laccase domain containing 1","termid":"PBO:0052976"}


id: PR:Q92372
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A replication protein A 70 kDa DNA-binding subunit that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx","PANTHER:PTHR23273:SF0","OMA:SCHPO02369"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"replication factor A protein 1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC660.13c","secondary_identifiers":["UniProtKB:Q92372"],"synonyms":[{"name":"Spom972h-RPA1","type":"exact"},{"name":"single-stranded DNA-binding protein p68 subunit (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:Q92372"}


id: PBO:0029986
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_ubiquitin_ligase_activity","termid":"PBO:0029986"}


id: GO:0008397
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: a steroid + donor-H2 + O2 = 12-alpha-hydroxysteroid + H2O.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"steroid hydroxylase activity","termid":"GO:0008395"},{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen","termid":"GO:0016712"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0003824","GO:0016491","GO:0003674"],"is_obsolete":false,"name":"sterol 12-alpha-hydroxylase activity","secondary_identifiers":["EC:1.14.14.139"],"synonyms":[{"name":"cytochrome P450 CYP8B1","type":"narrow"}],"termid":"GO:0008397"}


id: GO:1903984
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of TRAIL-activated apoptotic signaling pathway.","definition_xrefs":["GO_REF:0000058","GOC:TermGenie","GOC:PARL","PMID:24939851","GOC:bf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of extrinsic apoptotic signaling pathway via death domain receptors","termid":"GO:1902043"},{"relation_name":"is_a","term_name":"regulation of TRAIL-activated apoptotic signaling pathway","termid":"GO:1903121"},{"relation_name":"positively_regulates","term_name":"TRAIL-activated apoptotic signaling pathway","termid":"GO:0036462"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"positively_regulates","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"positive regulation of TRAIL-activated apoptotic signaling pathway","synonyms":[{"name":"activation of TRAIL-activated apoptotic signaling pathway","type":"narrow"},{"name":"activation of TRAIL-activated extrinsic apoptotic signaling pathway","type":"narrow"},{"name":"activation of TRAIL-induced apoptotic signaling pathway","type":"narrow"},{"name":"activation of tumor necrosis factor-related apoptosis-inducing ligand apoptotic signaling pathway","type":"narrow"},{"name":"positive regulation of TRAIL-activated extrinsic apoptotic signaling pathway","type":"exact"},{"name":"positive regulation of TRAIL-induced apoptotic signaling pathway","type":"exact"},{"name":"positive regulation of tumor necrosis factor-related apoptosis-inducing ligand apoptotic signaling pathway","type":"exact"},{"name":"up regulation of TRAIL-activated apoptotic signaling pathway","type":"exact"},{"name":"up regulation of TRAIL-activated extrinsic apoptotic signaling pathway","type":"exact"},{"name":"up regulation of TRAIL-induced apoptotic signaling pathway","type":"exact"},{"name":"up regulation of tumor necrosis factor-related apoptosis-inducing ligand apoptotic signaling pathway","type":"exact"},{"name":"up-regulation of TRAIL-activated apoptotic signaling pathway","type":"exact"},{"name":"up-regulation of TRAIL-activated extrinsic apoptotic signaling pathway","type":"exact"},{"name":"up-regulation of TRAIL-induced apoptotic signaling pathway","type":"exact"},{"name":"up-regulation of tumor necrosis factor-related apoptosis-inducing ligand apoptotic signaling pathway","type":"exact"},{"name":"upregulation of TRAIL-activated apoptotic signaling pathway","type":"exact"},{"name":"upregulation of TRAIL-activated extrinsic apoptotic signaling pathway","type":"exact"},{"name":"upregulation of TRAIL-induced apoptotic signaling pathway","type":"exact"},{"name":"upregulation of tumor necrosis factor-related apoptosis-inducing ligand apoptotic signaling pathway","type":"exact"}],"termid":"GO:1903984"}


id: PBO:0068605
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U2 small nuclear 56, pseudogene","termid":"PBO:0068605"}


id: GO:0003242
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The morphogenic growth in which the chambers of the heart expand in size, contributing to their shaping.","definition_xrefs":["GOC:mtg_heart"],"direct_ancestors":[{"relation_name":"is_a","term_name":"growth involved in heart morphogenesis","termid":"GO:0003241"},{"relation_name":"part_of","term_name":"cardiac chamber morphogenesis","termid":"GO:0003206"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cardiac chamber ballooning","termid":"GO:0003242"}


id: PBO:0085053
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Non-essential protein of unknown function; induced by treatment with 8-methoxypsoralen and UVA irradiation; ECM13 has a paralog, YJR115W, that arose from the whole genome duplication","termid":"PBO:0085053"}


id: MOD:01910
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively substitutes one hydrogen atom of a residue with one fluorine atom.","definition_xrefs":["Unimod:127"],"direct_ancestors":[{"relation_name":"is_a","term_name":"fluorinated residue","termid":"MOD:00498"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"monofluorinated residue","synonyms":[{"name":"F1Res","type":"exact"}],"termid":"MOD:01910"}


id: PR:Q9USM2
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPCC16A11.15c gene.","definition_xrefs":["UniProtKB:Q9USM2","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized protein C16A11.15c (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC16A11.15c","synonyms":[{"name":"Spom972h-SPCC16A11.15c","type":"exact"}],"termid":"PR:Q9USM2"}


id: PBO:0057973
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 3689e","termid":"PBO:0057973"}


id: GO:0019779
data:
  {"annotated_genes":["SJAG_00645"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[107887],"is_not":false,"summary":null,"term":"GO:0019779"}]},"cv_name":"molecular_function","definition":"Catalysis of the activation of the small ubiquitin-related modifier APG8, through the formation of an ATP-dependent high-energy thiolester bond.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ubiquitin-like modifier activating enzyme activity","termid":"GO:0008641"}],"gene_count":1,"genes_by_uniquename":{"SJAG_00645":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0140096"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016874"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016874","GO:0140096"],"is_obsolete":false,"name":"Atg8 activating enzyme activity","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"APG7","type":"exact"},{"name":"APG8 activating enzyme activity","type":"related"}],"termid":"GO:0019779","terms_by_termid":{"GO:0019779":null}}


id: GO:0102826
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: UDP-alpha-D-glucose + kaempferol 3-O-glucoside = kaempferol 3,7-O-diglucoside + UDP.","definition_xrefs":["EC:2.4.1.-","GOC:pz"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hexosyltransferase activity","termid":"GO:0016758"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016757"}],"interesting_parent_ids":["GO:0003674","GO:0016757","GO:0003824","GO:0016740"],"is_obsolete":false,"name":"kaempferol-3-glucoside-glucosyltransferase activity","secondary_identifiers":["MetaCyc:RXN-8270"],"termid":"GO:0102826"}


id: PATO:0000342
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0000342 gametophyte compatible value (obsolete PATO:0000342)","termid":"PATO:0000342"}


id: PBO:0060079
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MT-ND5 pseudogene 26","termid":"PBO:0060079"}


id: FYECO:0000215
data:
  {"annotation_feature_type":"gene","cv_name":"fission_yeast_phenotype_condition","definition":"Any experimental condition where the pH of the medium or assay buffer is lower than the standard pombe growth medium of pH of ~5.6.","definition_xrefs":["PomBase:al"],"direct_ancestors":[{"relation_name":"is_a","term_name":"grouping experimental environment","termid":"FYECO:0000132"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"low pH","termid":"FYECO:0000215"}


id: PBO:0068971
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 215, pseudogene","termid":"PBO:0068971"}


id: SO:0000513
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"Genomic DNA of immunoglobulin/T-cell receptor gene in germline configuration including more than one J-gene.","direct_ancestors":[{"relation_name":"has_part","term_name":"J_gene_segment","termid":"SO:0000470"},{"relation_name":"is_a","term_name":"vertebrate_immunoglobulin_T_cell_receptor_gene_cluster","termid":"SO:0000482"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"J_cluster","synonyms":[{"name":"J cluster","type":"exact"},{"name":"J-CLUSTER","type":"exact"}],"termid":"SO:0000513"}


id: GO:0002948
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: L-glutamine + 7-cyano-7-carbaguanine15 in tRNA + H2O = L-glutamate + archaeine15 in tRNA.","definition_xrefs":["RHEA:54084","PMID:20129918"],"direct_ancestors":[{"relation_name":"is_a","term_name":"transferase activity, transferring nitrogenous groups","termid":"GO:0016769"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016769"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016740"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016740","GO:0016769"],"is_obsolete":false,"name":"archaeosine synthase activity","secondary_identifiers":["Wikipedia:Archaeosine_synthase","EC:2.6.1.97"],"synonyms":[{"name":"ArcS","type":"related"},{"name":"glutamine:preQ0-tRNA amidinotransferase","type":"related"}],"termid":"GO:0002948"}


id: PR:Q9HGQ1
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of any of the following genes in Schizosaccharomyces pombe 972h-: SPAC212.01c/SPBCPT2R1.04c.","definition_xrefs":["PRO:DNx","UniProtKB:Q9HGQ1"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"UPF0494 membrane protein C212.01c/CPT2R1.04c (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBCPT2R1.04c","synonyms":[{"name":"Spom972h-SPBCPT2R1.04c","type":"exact"}],"termid":"PR:Q9HGQ1"}


id: GO:0005125
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"The activity of a soluble extracellular gene product that interacts with a receptor to effect a change in the activity of the receptor to control the survival, growth, differentiation and effector function of tissues and cells.","definition_xrefs":["ISBN:0198599471","PMID:11530802"],"direct_ancestors":[{"relation_name":"is_a","term_name":"receptor ligand activity","termid":"GO:0048018"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0140677"},{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0098772"},{"rel_name":"is_a","termid":"GO:0005515"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0098772","GO:0140677","GO:0005488","GO:0005515"],"is_obsolete":false,"name":"cytokine activity","synonyms":[{"name":"autocrine activity","type":"related"},{"name":"paracrine activity","type":"related"}],"termid":"GO:0005125"}


id: _global:occurs_in
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"p occurs_in c if and only if all of the participants of p are part_of c.","definition_xrefs":["BFO:cjm"],"direct_ancestors":[{"relation_name":"is_a","term_name":"go_annotation_extension_relation","termid":"_global:go_annotation_extension_relation"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"occurs_in","secondary_identifiers":["BFO:0000066"],"synonyms":[{"name":"in","type":"related"}],"termid":"_global:occurs_in"}


id: GO:0016717
data:
  {"annotated_genes":["SJAG_03249","SJAG_03509","SJAG_05311","SJAG_00717","SJAG_01057","SJAG_03943"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[87694],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0000249"},{"annotations":[85887,103723],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0000248"},{"annotations":[103724,85888],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0050046"},{"annotations":[108735,105918],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0042284"},{"annotations":[110591],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004768"}]},"cv_name":"molecular_function","definition":"Catalysis of an oxidation-reduction (redox) reaction in which hydrogen or electrons are transferred from each of two donors, and molecular oxygen is reduced to two molecules of water.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen","termid":"GO:0016705"}],"gene_count":6,"genes_by_uniquename":{"SJAG_00717":null,"SJAG_01057":null,"SJAG_03249":null,"SJAG_03509":null,"SJAG_03943":null,"SJAG_05311":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016491","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["EC:1.14.19.-"],"termid":"GO:0016717","terms_by_termid":{"GO:0000248":null,"GO:0000249":null,"GO:0004768":null,"GO:0042284":null,"GO:0050046":null}}


id: PBO:0055620
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 3059","termid":"PBO:0055620"}


id: PATO:0001158
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0001158 relative concentration value (obsolete PATO:0001158)","termid":"PATO:0001158"}


id: PR:000027619
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A transcription factor zip1 phosphorylated form in Schizosaccharomyces pombe. Example: UniProtKB:Q10424-1, MOD:00696.","definition_xrefs":["PMID:15660136","PomBase:MAH"],"direct_ancestors":[{"relation_name":"is_a","term_name":"transcription factor zip1","termid":"PR:000027614"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zip1/PhosRes+","pombase_gene_id":"SPAC25G10.03","synonyms":[{"name":"Spom-zip1/PhosRes+","type":"exact"},{"name":"zip1/PhosRes+","type":"exact"}],"termid":"PR:000027619"}


id: PR:Q9Y7L7
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A phosphatidylinositol N-acetylglucosaminyltransferase subunit H that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PANTHER:PTHR15231:SF0","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"phosphatidylinositol N-acetylglucosaminyltransferase subunit gpi15 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC685.05","secondary_identifiers":["UniProtKB:Q9Y7L7"],"synonyms":[{"name":"PIGH homolog (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"SPBC685.05","type":"related"},{"name":"Spom972h-PIGH","type":"exact"}],"termid":"PR:Q9Y7L7"}


id: PBO:0085100
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Nuclear protein; possibly involved in regulation of cation stress responses and/or in the establishment of bipolar budding pattern; relative distribution to the nucleus decreases upon DNA replication stress","termid":"PBO:0085100"}


id: GO:0009641
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Shade avoidance is a set of responses that plants display when they are subjected to the shade of another plant. It often includes elongation, altered flowering time, increased apical dominance and altered partitioning of resources. Plants are able to distinguish between the shade of an inanimate object (e.g. a rock) and the shade of another plant due to the altered balance between red and far-red light in the shade of a plant; this balance between red and far-red light is perceived by phytochrome.","definition_xrefs":["Wikipedia:Shade_avoidance"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to red or far red light","termid":"GO:0009639"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"shade avoidance","termid":"GO:0009641"}


id: PBO:0057902
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 3529","termid":"PBO:0057902"}


id: PBO:0043502
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CNTNAP2 antisense RNA 1","termid":"PBO:0043502"}


id: PBO:0001676
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"alanine racemase (predicted)","termid":"PBO:0001676"}


id: PBO:0002876
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pinin ortholog, involved in splicing Pnn1 (predicted)","termid":"PBO:0002876"}


id: PBO:0005270
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ER membrane protein complex subunit 6 (predicted)","termid":"PBO:0005270"}


id: GO:0102528
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: S-adenosyl-L-methionine + 7,8,4'-trihydroxyflavone = H+ + S-adenosyl-L-homocysteine + 7,4'-dihydroxy, 8-methoxyflavone.","definition_xrefs":["EC:2.1.1.-","GOC:pz"],"direct_ancestors":[{"relation_name":"is_a","term_name":"methyltransferase activity","termid":"GO:0008168"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0016741"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016740","GO:0016741","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"7,8,4'-trihydroxyflavone methyltransferase activity","secondary_identifiers":["MetaCyc:RXN-14658"],"termid":"GO:0102528"}


id: PBO:0057415
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 548p","termid":"PBO:0057415"}


id: PBO:0089755
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glucose-6-phosphate 1-dehydrogenase","termid":"PBO:0089755"}


id: FYPO:0009018
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell population phenotype in which a higher than normal proportion of cells in the population remains viable after entering stationary phase, when subjected to glucose starvation and when cadmium is present in the medium in a higher proportion than usual.","direct_ancestors":[{"relation_name":"is_a","term_name":"increased viability in stationary phase","termid":"FYPO:0001309"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0002057"},{"rel_name":"is_a","termid":"FYPO:0000003"}],"interesting_parent_ids":["FYPO:0000003","FYPO:0001985","FYPO:0002057"],"is_obsolete":false,"name":"increased viability in stationary phase upon glucose starvation in the presence of cadmium","termid":"FYPO:0009018"}


id: GO:0070746
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to interleukin-35.","definition_xrefs":["GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cytokine binding","termid":"GO:0019955"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005515"}],"interesting_parent_ids":["GO:0005515","GO:0005488","GO:0003674"],"is_obsolete":false,"name":"interleukin-35 binding","synonyms":[{"name":"IL-35 binding","type":"exact"}],"termid":"GO:0070746"}


id: GO:0044010
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process in which planktonically growing microorganisms of the same species grow at a liquid-air interface or on a solid substrate under the flow of a liquid and produce extracellular polymers that facilitate matrix formation, resulting in a change in the organisms' growth rate and gene transcription.","definition_xrefs":["GOC:di","GOC:tb","GOC:cc"],"direct_ancestors":[{"relation_name":"is_a","term_name":"biofilm formation","termid":"GO:0042710"},{"relation_name":"is_a","term_name":"biological process involved in intraspecies interaction between organisms","termid":"GO:0051703"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"single-species biofilm formation","secondary_identifiers":["GO:0052000"],"synonyms":[{"name":"auto-aggregation","type":"broad"},{"name":"bfp-dependent aggregation","type":"narrow"},{"name":"bundle-forming fimbriae-dependent aggregation","type":"narrow"},{"name":"bundle-forming pili-dependent aggregation","type":"narrow"},{"name":"tfp-dependent aggregation","type":"narrow"},{"name":"type IV pili-dependent aggregation","type":"narrow"}],"termid":"GO:0044010"}


id: GO:1902833
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of cell proliferation in dorsal spinal cord.","definition_xrefs":["PMID:21730158","GOC:mr","GOC:TermGenie","GO_REF:0000058"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of cell proliferation in dorsal spinal cord","termid":"GO:0021921"},{"relation_name":"is_a","term_name":"positive regulation of neural precursor cell proliferation","termid":"GO:2000179"},{"relation_name":"positively_regulates","term_name":"cell proliferation in dorsal spinal cord","termid":"GO:0010456"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of cell proliferation in dorsal spinal cord","synonyms":[{"name":"activation of cell proliferation in dorsal spinal cord","type":"narrow"},{"name":"up regulation of cell proliferation in dorsal spinal cord","type":"exact"},{"name":"up-regulation of cell proliferation in dorsal spinal cord","type":"exact"},{"name":"upregulation of cell proliferation in dorsal spinal cord","type":"exact"}],"termid":"GO:1902833"}


id: GO:0031117
data:
  {"annotated_genes":["SJAG_04312"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[98033],"is_not":false,"summary":null,"term":"GO:0031117"}]},"cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of microtubule depolymerization.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of microtubule polymerization or depolymerization","termid":"GO:0031112"},{"relation_name":"is_a","term_name":"regulation of microtubule depolymerization","termid":"GO:0031114"},{"relation_name":"is_a","term_name":"positive regulation of protein depolymerization","termid":"GO:1901881"},{"relation_name":"is_a","term_name":"positive regulation of supramolecular fiber organization","termid":"GO:1902905"},{"relation_name":"positively_regulates","term_name":"microtubule depolymerization","termid":"GO:0007019"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04312":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0007010"},{"rel_name":"positively_regulates","termid":"GO:0000226"},{"rel_name":"regulates","termid":"GO:0000226"},{"rel_name":"positively_regulates","termid":"GO:0007010"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0007010","GO:0000226"],"is_obsolete":false,"name":"positive regulation of microtubule depolymerization","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"activation of microtubule depolymerization","type":"narrow"},{"name":"microtubule destabilization","type":"exact"},{"name":"positive regulation of microtubule catastrophe","type":"narrow"},{"name":"positive regulation of microtubule disassembly","type":"exact"},{"name":"stimulation of microtubule depolymerization","type":"narrow"},{"name":"up regulation of microtubule depolymerization","type":"exact"},{"name":"up-regulation of microtubule depolymerization","type":"exact"},{"name":"upregulation of microtubule depolymerization","type":"exact"}],"termid":"GO:0031117","terms_by_termid":{"GO:0031117":null}}


id: PBO:0039906
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ARHGEF7 antisense RNA 1","termid":"PBO:0039906"}


id: GO:0048012
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The series of molecular signals initiated by a ligand binding to a hepatocyte growth factor receptor, and ending with the regulation of a downstream cellular process, e.g. transcription.","definition_xrefs":["GOC:ceb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell surface receptor protein tyrosine kinase signaling pathway","termid":"GO:0007169"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"hepatocyte growth factor receptor signaling pathway","synonyms":[{"name":"HGF receptor signaling pathway","type":"exact"},{"name":"HGF receptor signalling pathway","type":"exact"},{"name":"Met signaling pathway","type":"narrow"}],"termid":"GO:0048012"}


id: PBO:0091784
data:
  {"annotation_feature_type":"gene","cv_name":"cat_act","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"kcat/KM 4.3x10^7 M-1 min-1","termid":"PBO:0091784"}


id: PBO:0062110
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 4 subfamily C member 9 pseudogene","termid":"PBO:0062110"}


id: PBO:0082462
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Calcineurin A; one isoform (the other is Cna1p) of the catalytic subunit of calcineurin, a Ca++/calmodulin-regulated protein phosphatase which regulates Crz1p (a stress-response transcription factor), the other calcineurin subunit is CNB1; regulates the function of Aly1p alpha-arrestin; CMP2 has a paralog, CNA1, that arose from the whole genome duplication","termid":"PBO:0082462"}


id: SO:0000061
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A binding site that, in the nucleotide molecule, interacts selectively and non-covalently with polypeptide residues of a restriction enzyme.","definition_xrefs":["SO:cb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nuclease_binding_site","termid":"SO:0000059"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"restriction_enzyme_binding_site","synonyms":[{"name":"restriction endonuclease binding site","type":"exact"},{"name":"restriction enzyme binding site","type":"exact"}],"termid":"SO:0000061"}


id: PBO:0080781
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"XK related, Y-linked pseudogene 1","termid":"PBO:0080781"}


id: PBO:0080311
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"vomeronasal 1 receptor 75 pseudogene","termid":"PBO:0080311"}


id: PBO:0062405
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 7 subfamily E member 29 pseudogene","termid":"PBO:0062405"}


id: GO:0097741
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A hair-like structure covering the flagella found in some algae (heterokonts and cryptophytes). It is approximately 15 nm in diameter, and usually consist of a tubular shaft that itself terminates in smaller hairs. It is composed of glycoproteins and, likely, carbohydrates. Mastigonemes may assist in locomotion by increasing the surface area of a flagellum.","definition_xrefs":["Wikipedia:Mastigoneme","GOC:cilia","PMID:943397"],"direct_ancestors":[{"relation_name":"is_a","term_name":"supramolecular complex","termid":"GO:0099080"},{"relation_name":"part_of","term_name":"motile cilium","termid":"GO:0031514"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"mastigoneme","termid":"GO:0097741"}


id: PBO:0012835
data:
  {"annotation_feature_type":"gene","cv_name":"complementation","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"functionally complented by H. sapiens NRAS","termid":"PBO:0012835"}


id: GO:0034102
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The selective elimination of erythrocytes from the body by autoregulatory mechanisms.","definition_xrefs":["PMID:14754397","GOC:add","PMID:12905029"],"direct_ancestors":[{"relation_name":"is_a","term_name":"tissue remodeling","termid":"GO:0048771"},{"relation_name":"part_of","term_name":"erythrocyte homeostasis","termid":"GO:0034101"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"erythrocyte clearance","synonyms":[{"name":"RBC clearance","type":"exact"},{"name":"neocytolysis","type":"narrow"},{"name":"red blood cell clearance","type":"exact"}],"termid":"GO:0034102"}


id: PBO:0050235
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"high mobility group nucleosomal binding domain 2 pseudogene 13","termid":"PBO:0050235"}


id: PBO:0004366
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase family or domain","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PKC subfamily","termid":"PBO:0004366"}


id: GO:0043062
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of structures in the space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane, and also covers the host cell environment outside an intracellular parasite.","definition_xrefs":["GOC:jl","GOC:mah","GOC:dph","GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular component organization","termid":"GO:0016043"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"extracellular structure organization","synonyms":[{"name":"extracellular structure organisation","type":"exact"},{"name":"extracellular structure organization and biogenesis","type":"exact"}],"termid":"GO:0043062"}


id: GO:0046246
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of terpenes, any of a large group of hydrocarbons made up of isoprene units.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"isoprenoid biosynthetic process","termid":"GO:0008299"},{"relation_name":"is_a","term_name":"terpene metabolic process","termid":"GO:0042214"},{"relation_name":"is_a","term_name":"hydrocarbon biosynthetic process","termid":"GO:0120251"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006629"}],"interesting_parent_ids":["GO:0006629","GO:0008150"],"is_obsolete":false,"name":"terpene biosynthetic process","synonyms":[{"name":"terpene anabolism","type":"exact"},{"name":"terpene biosynthesis","type":"exact"},{"name":"terpene formation","type":"exact"},{"name":"terpene synthesis","type":"exact"}],"termid":"GO:0046246"}


id: GO:0038001
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The transfer of information from one cell to another, where the signal travels from the signal-producing cell to the receiving cell by passive diffusion or bulk flow in intercellular fluid. The signaling cell and the receiving cell are usually in the vicinity of each other.","definition_xrefs":["ISBN:3527303782","GOC:mtg_signaling_feb11"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell-cell signaling","termid":"GO:0007267"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"paracrine signaling","synonyms":[{"name":"paracrine signalling","type":"exact"}],"termid":"GO:0038001"}


id: GO:0032903
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate, or extent of production of nerve growth factor (NGF).","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of neurotrophin production","termid":"GO:0032899"},{"relation_name":"regulates","term_name":"nerve growth factor production","termid":"GO:0032902"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of nerve growth factor production","synonyms":[{"name":"regulation of NGF production","type":"exact"},{"name":"regulation of beta-nerve growth factor production","type":"exact"}],"termid":"GO:0032903"}


id: PBO:0073534
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SH3 domain containing GRB2 like, endophilin B2","termid":"PBO:0073534"}


id: GO:0032187
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The process in which a contractile ring is positioned or maintained in a specific location, in the context of cytokinesis that takes place as part of a cell cycle.","definition_xrefs":["GOC:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete actomyosin contractile ring localization (obsolete GO:0032187)","synonyms":[{"name":"contractile ring localisation involved in cell cycle cytokinesis","type":"exact"},{"name":"contractile ring localization involved in cell cycle cytokinesis","type":"exact"}],"termid":"GO:0032187"}


id: FYPO:0003389
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell morphology phenotype in which a vegetative cell is viable, is elongated, has a larger diameter than normal near the equator (but not at the ends), and has an overall volume greater than normal.","definition_xrefs":["PomBase:mah","PomBase:vw","PMID:24554432"],"direct_ancestors":[{"relation_name":"is_a","term_name":"viable elongated vegetative cell","termid":"FYPO:0001492"},{"relation_name":"is_a","term_name":"viable swollen vegetative cell with abnormal cell shape","termid":"FYPO:0002402"},{"relation_name":"is_a","term_name":"viable swollen elongated vegetative cell","termid":"FYPO:0002479"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"has_part","termid":"FYPO:0000004"},{"rel_name":"is_a","termid":"FYPO:0000005"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"has_part","termid":"FYPO:0000005"},{"rel_name":"has_part","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000004"},{"rel_name":"has_part","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0000004","FYPO:0001985","FYPO:0000002","FYPO:0000005","FYPO:0001320"],"is_obsolete":false,"name":"viable elongated vegetative cell with swollen medial region","synonyms":[{"name":"medial bulge formation phenotype","type":"exact"},{"name":"viable elongated vegetative cell with swollen medial region during mitotic cell cycle","type":"related"},{"name":"viable elongated vegetative cell with swollen medial region during vegetative growth","type":"exact"}],"termid":"FYPO:0003389"}


id: PATO:0001129
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0001129 relative work value (obsolete PATO:0001129)","termid":"PATO:0001129"}


id: PBO:0038294
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase feature property types","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"source_database","termid":"PBO:0038294"}


id: PBO:0039634
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"amine oxidase copper containing 2","termid":"PBO:0039634"}


id: GO:1900714
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of violaceol I biosynthetic process.","definition_xrefs":["GOC:di","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of cellular biosynthetic process","termid":"GO:0031327"},{"relation_name":"is_a","term_name":"negative regulation of small molecule metabolic process","termid":"GO:0062014"},{"relation_name":"is_a","term_name":"negative regulation of secondary metabolite biosynthetic process","termid":"GO:1900377"},{"relation_name":"is_a","term_name":"regulation of violaceol I biosynthetic process","termid":"GO:1900713"},{"relation_name":"negatively_regulates","term_name":"violaceol I biosynthetic process","termid":"GO:1900590"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0044281"},{"rel_name":"negatively_regulates","termid":"GO:0019748"},{"rel_name":"regulates","termid":"GO:0019748"},{"rel_name":"negatively_regulates","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0019748","GO:0044281","GO:0008150"],"is_obsolete":false,"name":"negative regulation of violaceol I biosynthetic process","synonyms":[{"name":"down regulation of violaceol I anabolism","type":"exact"},{"name":"down regulation of violaceol I biosynthesis","type":"exact"},{"name":"down regulation of violaceol I biosynthetic process","type":"exact"},{"name":"down regulation of violaceol I formation","type":"exact"},{"name":"down regulation of violaceol I synthesis","type":"exact"},{"name":"down-regulation of violaceol I anabolism","type":"exact"},{"name":"down-regulation of violaceol I biosynthesis","type":"exact"},{"name":"down-regulation of violaceol I biosynthetic process","type":"exact"},{"name":"down-regulation of violaceol I formation","type":"exact"},{"name":"down-regulation of violaceol I synthesis","type":"exact"},{"name":"downregulation of violaceol I anabolism","type":"exact"},{"name":"downregulation of violaceol I biosynthesis","type":"exact"},{"name":"downregulation of violaceol I biosynthetic process","type":"exact"},{"name":"downregulation of violaceol I formation","type":"exact"},{"name":"downregulation of violaceol I synthesis","type":"exact"},{"name":"inhibition of violaceol I anabolism","type":"exact"},{"name":"inhibition of violaceol I biosynthesis","type":"exact"},{"name":"inhibition of violaceol I biosynthetic process","type":"narrow"},{"name":"inhibition of violaceol I formation","type":"exact"},{"name":"inhibition of violaceol I synthesis","type":"exact"},{"name":"negative regulation of violaceol I anabolism","type":"exact"},{"name":"negative regulation of violaceol I biosynthesis","type":"exact"},{"name":"negative regulation of violaceol I formation","type":"exact"},{"name":"negative regulation of violaceol I synthesis","type":"exact"}],"termid":"GO:1900714"}


id: FYPO:0007777
data:
  {"alleles_by_uniquename":{"SJAG_00266:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_00266","name":"atf1delta","uniquename":"SJAG_00266:allele-1"},"SJAG_02592:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_02592","name":"sty1delta","uniquename":"SJAG_02592:allele-1"}},"annotation_feature_type":"genotype","cv_annotations":{"single_locus_phenotype":[{"annotations":[115538,115542],"is_not":false,"summary":null,"term":"FYPO:0007777"}]},"cv_name":"fission_yeast_phenotype","definition":"A phenotype in which hyphae form more branched filaments than normal.","definition_xrefs":["PomBase:mah","PMID:31150379"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal hyphal growth","termid":"FYPO:0007773"}],"gene_count":2,"genes_by_uniquename":{"SJAG_00266":null,"SJAG_02592":null},"genotype_count":2,"genotypes_by_uniquename":{"atf1delta":{"display_name":"atf1delta","display_uniquename":"atf1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_00266:allele-1","expression":"Null"}]}]},"sty1delta":{"display_name":"sty1delta","display_uniquename":"sty1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_02592:allele-1","expression":"Null"}]}]}},"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0007773"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0007773","FYPO:0000002"],"is_obsolete":false,"name":"increased hyphal branching","references_by_uniquename":{"PMID:31150379":null},"single_locus_annotated_genes":["SJAG_02592","SJAG_00266"],"single_locus_genotype_uniquenames":["atf1delta","sty1delta"],"synonyms":[{"name":"increased number of branched filaments","type":"exact"}],"termid":"FYPO:0007777","terms_by_termid":{"FYECO:0000314":null,"FYPO:0007777":null,"FYPO_EXT:0000002":null}}


id: GO:1901871
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of ecgonone methyl ester.","definition_xrefs":["PMID:22665766","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"alkaloid catabolic process","termid":"GO:0009822"},{"relation_name":"is_a","term_name":"ketone catabolic process","termid":"GO:0042182"},{"relation_name":"is_a","term_name":"heterocycle catabolic process","termid":"GO:0046700"},{"relation_name":"is_a","term_name":"organic cyclic compound catabolic process","termid":"GO:1901361"},{"relation_name":"is_a","term_name":"ecgonone methyl ester metabolic process","termid":"GO:1901870"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0044248"}],"interesting_parent_ids":["GO:0044281","GO:0008150","GO:0044248"],"is_obsolete":false,"name":"ecgonone methyl ester catabolic process","synonyms":[{"name":"ecgonone methyl ester breakdown","type":"exact"},{"name":"ecgonone methyl ester catabolism","type":"exact"},{"name":"ecgonone methyl ester degradation","type":"exact"}],"termid":"GO:1901871"}


id: PBO:0085290
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Pex3p interacting protein, required for pexophagy; interacts with Atg8p and Atg11p; mRNA is weakly cell cycle regulated, peaking in G2 phase; YJL185C is a non-essential gene","termid":"PBO:0085290"}


id: PR:P87215
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A thioredoxin-like protein 4A that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO04484","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitosis protein dim1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC16A11.05c","secondary_identifiers":["UniProtKB:P87215"],"synonyms":[{"name":"Spom972h-TXNL4A","type":"exact"}],"termid":"PR:P87215"}


id: PBO:0058679
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 6807","termid":"PBO:0058679"}


id: GO:0036278
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that increases the frequency, rate or extent of transcription from an RNA polymerase II promoter as a result of a deprivation of nitrogen.","definition_xrefs":["PMID:21118960","GOC:al"],"gene_count":0,"genotype_count":0,"name":"obsolete positive regulation of transcription from RNA polymerase II promoter in response to nitrogen starvation (obsolete GO:0036278)","termid":"GO:0036278"}


id: GO:1903588
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of blood vessel endothelial cell proliferation involved in sprouting angiogenesis.","definition_xrefs":["PMID:23388056","GO_REF:0000058","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of endothelial cell proliferation","termid":"GO:0001937"},{"relation_name":"is_a","term_name":"regulation of blood vessel endothelial cell proliferation involved in sprouting angiogenesis","termid":"GO:1903587"},{"relation_name":"negatively_regulates","term_name":"blood vessel endothelial cell proliferation involved in sprouting angiogenesis","termid":"GO:0002043"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of blood vessel endothelial cell proliferation involved in sprouting angiogenesis","synonyms":[{"name":"down regulation of blood vessel endothelial cell proliferation during sprouting angiogenesis","type":"related"},{"name":"down regulation of blood vessel endothelial cell proliferation involved in sprouting angiogenesis","type":"exact"},{"name":"down-regulation of blood vessel endothelial cell proliferation during sprouting angiogenesis","type":"related"},{"name":"down-regulation of blood vessel endothelial cell proliferation involved in sprouting angiogenesis","type":"exact"},{"name":"downregulation of blood vessel endothelial cell proliferation during sprouting angiogenesis","type":"related"},{"name":"downregulation of blood vessel endothelial cell proliferation involved in sprouting angiogenesis","type":"exact"},{"name":"inhibition of blood vessel endothelial cell proliferation during sprouting angiogenesis","type":"related"},{"name":"inhibition of blood vessel endothelial cell proliferation involved in sprouting angiogenesis","type":"narrow"},{"name":"negative regulation of blood vessel endothelial cell proliferation during sprouting angiogenesis","type":"related"}],"termid":"GO:1903588"}


id: GO:0045033
data:
  {"annotated_genes":["SJAG_04315"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[102874],"is_not":false,"summary":null,"term":"GO:0045033"}]},"cv_name":"biological_process","definition":"The acquisition of peroxisomes by daughter cells from the mother cell after replication. In Saccharomyces cerevisiae, the number of peroxisomes cells is fairly constant; a subset of the organelles are targeted and segregated to the bud in a highly ordered, vectorial process. Efficient segregation of peroxisomes from mother to bud is dependent on the actin cytoskeleton, and active movement of peroxisomes along actin filaments is driven by the class V myosin motor protein, Myo2p.","definition_xrefs":["PMID:11733545"],"direct_ancestors":[{"relation_name":"is_a","term_name":"peroxisome organization","termid":"GO:0007031"},{"relation_name":"is_a","term_name":"organelle inheritance","termid":"GO:0048308"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04315":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0007031"}],"interesting_parent_ids":["GO:0008150","GO:0007031"],"is_obsolete":false,"name":"peroxisome inheritance","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0045033","terms_by_termid":{"GO:0045033":null}}


id: PBO:0071225
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L23a pseudogene 66","termid":"PBO:0071225"}


id: PBO:0111838
data:
  {"annotation_feature_type":"gene","cv_name":"pombase_family_or_domain","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tudor domain","termid":"PBO:0111838"}


id: PBO:0080078
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ubiquitin specific peptidase 40","termid":"PBO:0080078"}


id: PBO:0047882
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"fragile site, aphidicolin type, common, fra(5)(q31.1)","termid":"PBO:0047882"}


id: PR:Q8TF80
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- wtf5 gene.","definition_xrefs":["UniProtKB:Q8TF80","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized protein wtf5 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC794.02","synonyms":[{"name":"Spom972h-wtf5","type":"exact"}],"termid":"PR:Q8TF80"}


id: PBO:0079802
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"UDP glucuronosyltransferase family 2 member B17","termid":"PBO:0079802"}


id: PBO:0068936
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 179, pseudogene","termid":"PBO:0068936"}


id: PBO:0082514
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Catalytic subunit of the histone acetyltransferase complex (NuA4); acetylates four conserved internal lysines of histone H4 N-terminal tail and can acetylate histone H2A; master regulator of cellular acetylation balance; required for cell cycle progression and transcriptional silencing at the rDNA locus and regulation of autophagy; human ortholog TIP60/KAT5 is implicated in cancer and other diseases, functionally complements lethality of the esa1 null mutation","termid":"PBO:0082514"}


id: PBO:0053226
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"legumain pseudogene 1","termid":"PBO:0053226"}


id: PR:Q9US15
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPAC607.02c gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q9US15"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"UPF0653 protein C607.02c (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC607.02c","synonyms":[{"name":"Spom972h-SPAC607.02c","type":"exact"}],"termid":"PR:Q9US15"}


id: PBO:0057777
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 2392","termid":"PBO:0057777"}


id: PBO:0059247
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial ribosomal protein L16","termid":"PBO:0059247"}


id: PBO:0060358
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"myocilin opposite strand","termid":"PBO:0060358"}


id: PBO:0076446
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TAFA chemokine like family member 2","termid":"PBO:0076446"}


id: PBO:0017030
data:
  {"annotation_feature_type":"gene","cv_name":"complementation","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"functionally complemented by human MARK4","termid":"PBO:0017030"}


id: PBO:0083714
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ER membrane protein that plays a central role in ERAD; forms HRD complex with Hrd1p and ER-associated protein degradation (ERAD) determinants that engages in lumen to cytosol communication and coordination of ERAD events","termid":"PBO:0083714"}


id: GO:0052146
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The directed movement of a motile cell or organism on or near its host organism towards a higher level of a physical stimulus involved in energy generation, such as light, oxygen, and oxidizable substrates. The host is defined as the larger of the organisms involved in a symbiotic interaction.","definition_xrefs":["GOC:mtg_pamgo_17jul06"],"gene_count":0,"genotype_count":0,"name":"obsolete positive energy taxis on or near host (obsolete GO:0052146)","termid":"GO:0052146"}


id: GO:0072487
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A histone acetyltransferase complex that catalyzes the acetylation of a histone H4 lysine residue at position 16. In human, it contains the catalytic subunit MOF, and MSL1, MSL2 and MSL3.","definition_xrefs":["PMID:20018852","PMID:16227571"],"direct_ancestors":[{"relation_name":"is_a","term_name":"H4 histone acetyltransferase complex","termid":"GO:1902562"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005694"}],"interesting_parent_ids":["GO:0005575","GO:0032991","GO:0005694"],"is_obsolete":false,"name":"MSL complex","termid":"GO:0072487"}


id: PR:Q9P7K2
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPCC24B10.03 gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q9P7K2"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized protein C24B10.03 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC24B10.03","synonyms":[{"name":"Spom972h-SPCC24B10.03","type":"exact"}],"termid":"PR:Q9P7K2"}


id: PBO:0058699
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 6827","termid":"PBO:0058699"}


id: PBO:0002246
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"3-hydroxyacyl-CoA dehydrogenase (predicted)","termid":"PBO:0002246"}


id: GO:0061178
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of the regulated release of insulin that contributes to the response of a cell to glucose.","definition_xrefs":["GOC:BHF","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of insulin secretion","termid":"GO:0050796"},{"relation_name":"regulates","term_name":"insulin secretion involved in cellular response to glucose stimulus","termid":"GO:0035773"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0006810","GO:0023052","GO:0008150"],"is_obsolete":false,"name":"regulation of insulin secretion involved in cellular response to glucose stimulus","synonyms":[{"name":"regulation of insulin secretion in response to glucose","type":"exact"}],"termid":"GO:0061178"}


id: PBO:0049130
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"G protein regulated inducer of neurite outgrowth 1","termid":"PBO:0049130"}


id: PBO:0033819
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"splicing factor Srp2","termid":"PBO:0033819"}


id: PBO:0091664
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"plasma membrane mannan endo-1,6-alpha-mannosidase Dfg502","termid":"PBO:0091664"}


id: PBO:0012859
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"exosome subunit Rrp45","termid":"PBO:0012859"}


id: PBO:0000068
data:
  {"annotation_feature_type":"gene","cv_name":"m_f_g","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cell surface glycoprotein","termid":"PBO:0000068"}


id: GO:0007240
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. (Was not defined before being made obsolete).","definition_xrefs":["GOC:ai"],"gene_count":0,"genotype_count":0,"name":"obsolete nuclear translocation of Hog1 (obsolete GO:0007240)","synonyms":[{"name":"nuclear translocation of Hog1","type":"exact"}],"termid":"GO:0007240"}


id: FYPO:0007011
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to chromatin at non-coding RNA genes is increased.","definition_xrefs":["PMID:31294478","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased protein localization to chromatin during vegetative growth","termid":"FYPO:0003011"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001320","FYPO:0005447","FYPO:0000138","FYPO:0001985"],"is_obsolete":false,"name":"increased protein localization to chromatin at ncRNA genes","synonyms":[{"name":"increased protein localisation to chromatin at ncRNA genes","type":"exact"},{"name":"increased protein localization to chromatin at ncRNA genes during mitotic cell cycle","type":"related"},{"name":"increased protein localization to chromatin at ncRNA genes during vegetative growth","type":"exact"},{"name":"increased protein localization to chromatin at non-coding RNA genes","type":"exact"}],"termid":"FYPO:0007011"}


id: GO:0009790
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of an embryo from its formation until the end of its embryonic life stage. The end of the embryonic stage is organism-specific. For example, for mammals, the process would begin with zygote formation and end with birth. For insects, the process would begin at zygote formation and end with larval hatching. For plant zygotic embryos, this would be from zygote formation to the end of seed dormancy. For plant vegetative embryos, this would be from the initial determination of the cell or group of cells to form an embryo until the point when the embryo becomes independent of the parent plant.","definition_xrefs":["GOC:isa_complete","GOC:mtg_sensu","GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"multicellular organism development","termid":"GO:0007275"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"embryo development","secondary_identifiers":["GO:0009795","Wikipedia:Embryogenesis"],"synonyms":[{"name":"embryogenesis","type":"exact"},{"name":"embryogenesis and morphogenesis","type":"broad"},{"name":"embryonal development","type":"exact"}],"termid":"GO:0009790"}


id: GO:0102402
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 2-phenylethyl 6-O-beta-D-xylopyranosyl-beta-D-glucopyranoside + H2O = 2-phenylethanol + 6-O-(beta-D-xylopyranosyl)-beta-D-glucopyranose.","definition_xrefs":["EC:3.2.1.149","GOC:pz"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hydrolase activity, hydrolyzing O-glycosyl compounds","termid":"GO:0004553"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016798"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016787"}],"interesting_parent_ids":["GO:0016787","GO:0016798","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"2-phenylethyl 6-O-beta-D-xylopyranosyl-beta-D-glucopyranoside glucosidase (Yabukita) activity","secondary_identifiers":["MetaCyc:RXN-13694"],"termid":"GO:0102402"}


id: SO:1000067
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A mutation causing a disruption of the translational reading frame, due to the deletion of a nucleotide.","definition_xrefs":["SO:ke"],"gene_count":0,"genotype_count":0,"name":"OBSOLETE SO:1000067 sequence_variant_causing_minus_1_frameshift (obsolete SO:1000067)","synonyms":[{"name":"minus 1 frameshift mutation","type":"exact"},{"name":"sequence variant causing minus 1 frameshift","type":"exact"}],"termid":"SO:1000067"}


id: GO:0072034
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Signaling at short range between cells of the ureteric bud terminus and the kidney mesenchyme that positively regulates the formation of the renal vesicle.","definition_xrefs":["GOC:mtg_kidney_jan10"],"direct_ancestors":[{"relation_name":"is_a","term_name":"developmental induction","termid":"GO:0031128"},{"relation_name":"is_a","term_name":"positive regulation of kidney development","termid":"GO:0090184"},{"relation_name":"is_a","term_name":"positive regulation of animal organ morphogenesis","termid":"GO:0110110"},{"relation_name":"is_a","term_name":"positive regulation of morphogenesis of an epithelium","termid":"GO:1905332"},{"relation_name":"positively_regulates","term_name":"renal vesicle formation","termid":"GO:0072033"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"renal vesicle induction","synonyms":[{"name":"nephron induction","type":"exact"},{"name":"positive regulation of nephron formation","type":"exact"}],"termid":"GO:0072034"}


id: GO:0035186
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Mitotic division cycles 10 to 13 of the insect embryo. This is the second phase of the syncytial period where nuclei divide in a common cytoplasm without cytokinesis. The majority of migrating nuclei reach the embryo surface during cycle 10, after which they divide less synchronously than before, and the syncytial blastoderm cycles lengthen progressively.","definition_xrefs":["ISBN:0879694238"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell cycle comprising mitosis without cytokinesis","termid":"GO:0033301"},{"relation_name":"is_a","term_name":"mitotic cell cycle, embryonic","termid":"GO:0045448"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0007049"}],"interesting_parent_ids":["GO:0007049","GO:0008150"],"is_obsolete":false,"name":"syncytial blastoderm mitotic cell cycle","termid":"GO:0035186"}


id: PR:O36015
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A ribosomal RNA methyltransferase 1 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx","OMA:SCHPO02006"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC4F10.03c","secondary_identifiers":["UniProtKB:O36015"],"synonyms":[{"name":"2'-O-ribose RNA methyltransferase TRM7 homolog (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-FTSJ1","type":"exact"}],"termid":"PR:O36015"}


id: GO:0007192
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"An adenylate cyclase-activating G protein-coupled receptor signaling pathway initiated by serotonin binding to its receptor, and ending with the regulation of a downstream cellular process.","definition_xrefs":["GOC:mah","GOC:tb","GOC:dph","GOC:signaling"],"direct_ancestors":[{"relation_name":"is_a","term_name":"adenylate cyclase-activating G protein-coupled receptor signaling pathway","termid":"GO:0007189"},{"relation_name":"is_a","term_name":"serotonin receptor signaling pathway","termid":"GO:0007210"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"adenylate cyclase-activating serotonin receptor signaling pathway","synonyms":[{"name":"activation of adenylate cyclase activity by serotonin receptor signalling pathway","type":"related"},{"name":"serotonin receptor, adenylate cyclase activating pathway","type":"related"},{"name":"serotonin receptor, adenylyl cyclase activating pathway","type":"exact"}],"termid":"GO:0007192"}


id: PBO:0071489
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L32 pseudogene 30","termid":"PBO:0071489"}


id: GO:0003088
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id: RO:0002222
data:
  {"annotation_feature_type":"gene","cv_name":"relationship","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"temporally_related_to","termid":"RO:0002222"}


id: PBO:0066760
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RN7SK pseudogene 58","termid":"PBO:0066760"}


id: PR:Q9USS7
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein transport protein Sec24D that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO02758","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized protein C4.03c (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC4.03c","secondary_identifiers":["UniProtKB:Q9USS7"],"synonyms":[{"name":"Spom972h-SEC24D","type":"exact"}],"termid":"PR:Q9USS7"}


id: GO:0050733
data:
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id: GO:0097532
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a disturbance in organismal or cellular homeostasis caused by the chemical structure of the anion portion of a dissociated acid (rather than the acid acting as a proton donor). The acid chemical may be in gaseous, liquid or solid form.","definition_xrefs":["GOC:aa","PMID:10615049","GOC:rl","GOC:go_curators","PMID:19170886","Wikipedia:Acid","GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to acid chemical","termid":"GO:0001101"},{"relation_name":"is_a","term_name":"response to stress","termid":"GO:0006950"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"stress response to acid chemical","synonyms":[{"name":"response to acid stress","type":"broad"},{"name":"stress response to acid","type":"broad"}],"termid":"GO:0097532"}


id: PATO:0002144
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  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A radiopacity that is relatively high.","definition_xrefs":["PATOC:GVG"],"direct_ancestors":[{"relation_name":"increased_in_magnitude_relative_to","term_name":"normal","termid":"PATO:0000461"},{"relation_name":"is_a","term_name":"radiopacity","termid":"PATO:0002136"},{"relation_name":"is_a","term_name":"increased object quality","termid":"PATO:0002305"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"increased radiopacity","termid":"PATO:0002144"}


id: PBO:0085048
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Non-essential protein of unconfirmed function; affects pre-rRNA processing, may act as a negative regulator of the transcription of genes involved in pseudohyphal growth; homologous to Srd1p","termid":"PBO:0085048"}


id: GO:0090176
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of cytoskeletal structures comprising microtubules and their associated proteins and contributes to the establishment of planar polarity.","definition_xrefs":["GOC:tb","GOC:dph","GOC:ascb_2009"],"direct_ancestors":[{"relation_name":"is_a","term_name":"microtubule cytoskeleton organization","termid":"GO:0000226"},{"relation_name":"part_of","term_name":"establishment of planar polarity","termid":"GO:0001736"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0007010"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0000226"}],"interesting_parent_ids":["GO:0000226","GO:0008150","GO:0007010"],"is_obsolete":false,"name":"microtubule cytoskeleton organization involved in establishment of planar polarity","synonyms":[{"name":"microtubule cytoskeleton organisation involved in establishment of planar polarity","type":"exact"}],"termid":"GO:0090176"}


id: GO:0039653
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process in which a symbiont inhibits or disrupts transcription of genes into mRNA in its host. For example, symbiont proteins can interfere with host RNA polymerase or with transcription factors. The host is defined as the larger of the organisms involved in a symbiotic interaction.","definition_xrefs":["VZ:1577"],"direct_ancestors":[{"relation_name":"is_a","term_name":"symbiont-mediated suppression of host gene expression","termid":"GO:0039657"},{"relation_name":"is_a","term_name":"symbiont-mediated perturbation of host transcription","termid":"GO:0052026"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"symbiont-mediated suppression of host transcription","synonyms":[{"name":"host transcription shut-off","type":"exact"},{"name":"host transcription shutoff by virus","type":"narrow"},{"name":"suppression by virus of host DNA-dependent transcription","type":"narrow"},{"name":"suppression by virus of host transcription","type":"narrow"}],"termid":"GO:0039653"}


id: PBO:0052610
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"KRAB box domain containing 1","termid":"PBO:0052610"}


id: GO:0009892
data:
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id: PBO:0001097
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id: FYPO:0001363
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id: PBO:0075349
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id: PBO:0068227
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id: FYPO:0002384
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id: PBO:0040041
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id: PBO:0057413
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id: PBO:0089996
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id: PBO:0045664
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id: PBO:0041365
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id: PR:000027566
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id: PBO:0088059
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id: PR:O94451
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id: FYPO:0005849
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  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which heterochromatin is assembled over a smaller portion of the chromosome than normal.","definition_xrefs":["PMID:27648579","PomBase:mah","GO:0031507"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal heterochromatin assembly","termid":"FYPO:0003044"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000641"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0005447","FYPO:0001320","FYPO:0001985","FYPO:0000641"],"is_obsolete":false,"name":"decreased spatial extent of heterochromatin assembly","synonyms":[{"name":"decreased heterochromatin spreading","type":"related"},{"name":"decreased spatial extent of heterochromatin assembly during mitotic cell cycle","type":"related"},{"name":"decreased spatial extent of heterochromatin assembly during vegetative growth","type":"exact"},{"name":"decreased spatial extent of heterochromatin formation","type":"exact"},{"name":"reduced spatial extent of heterochromatin assembly","type":"exact"}],"termid":"FYPO:0005849"}


id: GO:0043515
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  {"annotated_genes":["SJAG_00684"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[115645],"is_not":false,"summary":null,"term":"GO:0043515"}]},"cv_name":"molecular_function","definition":"Binding to a kinetochore, a proteinaceous structure on a condensed chromosome, beside the centromere, to which the spindle fibers are attached.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"binding","termid":"GO:0005488"}],"gene_count":1,"genes_by_uniquename":{"SJAG_00684":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005488"}],"interesting_parent_ids":["GO:0003674","GO:0005488"],"is_obsolete":false,"name":"kinetochore binding","references_by_uniquename":{"PMID:32109380":null},"termid":"GO:0043515","terms_by_termid":{"GO:0043515":null}}


id: PBO:0062898
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  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"oxoeicosanoid receptor 1","termid":"PBO:0062898"}


id: GO:0055126
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"OBSOLETE. A protein complex that forms part of the nuclear pore complex. It forms a subcomplex with Nup159p and Nsp1p, interacts with Nup116p, and is required for proper localization of Nup116p. In Saccharomyces cerevisiae this complex contains Nup82p, Nsp1p, Nup159p, Nup116p, and Gle2p.","definition_xrefs":["GOC:jh","PMID:15741174","PMID:12791264"],"gene_count":0,"genotype_count":0,"name":"obsolete Nup82 complex (obsolete GO:0055126)","synonyms":[{"name":"Nup82 complex","type":"exact"}],"termid":"GO:0055126"}


id: PBO:0074938
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  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nucleolar RNA, C/D box 103C","termid":"PBO:0074938"}


id: PBO:0053939
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  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1239","termid":"PBO:0053939"}


id: GO:0140199
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  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of an adenylate cyclase-activating adrenergic receptor signaling pathway involved in some heart process.","definition_xrefs":["GOC:rph","GOC:BHF","GOC:BHF_miRNA"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of multicellular organismal process","termid":"GO:0051241"},{"relation_name":"is_a","term_name":"negative regulation of adenylate cyclase-activating adrenergic receptor signaling pathway","termid":"GO:0071878"},{"relation_name":"negatively_regulates","term_name":"adenylate cyclase-activating adrenergic receptor signaling pathway involved in heart process","termid":"GO:0086023"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"negatively_regulates","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"negative regulation of adenylate cyclase-activating adrenergic receptor signaling pathway involved in heart process","termid":"GO:0140199"}


id: GO:0014065
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  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. A series of reactions within the signal-receiving cell, mediated by the intracellular phosphatidylinositol 3-kinase (PI3K). Many cell surface receptor linked signaling pathways signal through PI3K to regulate numerous cellular functions.","definition_xrefs":["GOC:ef","PMID:22525052","Wikipedia:PI3K"],"gene_count":0,"genotype_count":0,"name":"obsolete phosphatidylinositol 3-kinase signaling (obsolete GO:0014065)","synonyms":[{"name":"PI 3-kinase cascade","type":"exact"},{"name":"PI3K cascade","type":"exact"},{"name":"PI3K signal transduction","type":"exact"},{"name":"PI3K signaling","type":"exact"},{"name":"phosphatidylinositol 3-kinase cascade","type":"related"},{"name":"phosphatidylinositol 3-kinase signal transduction","type":"exact"},{"name":"phosphoinositide 3-kinase cascade","type":"exact"}],"termid":"GO:0014065"}


id: PBO:0056368
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitogen-activated protein kinase 6 pseudogene 5","termid":"PBO:0056368"}


id: PBO:0073681
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sirtuin 3","termid":"PBO:0073681"}


id: PBO:0059541
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  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrially encoded tRNA-His (CAU/C)","termid":"PBO:0059541"}


id: GO:0016201
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  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which a neuronal cell in a multicellular organism recognizes chemorepellent signals that inhibit its growth toward the source.","definition_xrefs":["GOC:mah","ISBN:0878932437"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative chemotaxis","termid":"GO:0050919"},{"relation_name":"part_of","term_name":"synaptic target recognition","termid":"GO:0008039"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"synaptic target inhibition","termid":"GO:0016201"}


id: MOD:00543
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  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"modification from Unimod Chemical derivative","definition_xrefs":["Unimod:187","PubMed:11698400"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Unimod","termid":"MOD:00003"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"bis(hydroxyphenylglyoxal) arginine","synonyms":[{"name":"2HPG","type":"related"},{"name":"bis(hydroxphenylglyoxal) arginine","type":"related"}],"termid":"MOD:00543"}


id: PBO:0077937
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  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TPTEP2-CSNK1E readthrough","termid":"PBO:0077937"}


id: GO:0009823
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  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of cytokinins, a class of adenine-derived compounds that can function in plants as plant growth regulators.","definition_xrefs":["GOC:lr"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cytokinin metabolic process","termid":"GO:0009690"},{"relation_name":"is_a","term_name":"hormone catabolic process","termid":"GO:0042447"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cytokinin catabolic process","synonyms":[{"name":"cytokinin breakdown","type":"exact"},{"name":"cytokinin catabolism","type":"exact"},{"name":"cytokinin degradation","type":"exact"}],"termid":"GO:0009823"}


id: PBO:0067368
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  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 469, pseudogene","termid":"PBO:0067368"}


id: PR:Q9USK6
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- cbp3 gene.","definition_xrefs":["UniProtKB:Q9USK6","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CBP3-like protein (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC4B3.17","synonyms":[{"name":"Spom972h-cbp3","type":"exact"}],"termid":"PR:Q9USK6"}


id: GO:0042740
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  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of an antibiotic that has originated externally to the cell or organism.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"antibiotic catabolic process","termid":"GO:0017001"},{"relation_name":"is_a","term_name":"xenobiotic catabolic process","termid":"GO:0042178"},{"relation_name":"part_of","term_name":"response to antibiotic","termid":"GO:0046677"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044248"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0044248","GO:0008150"],"is_obsolete":false,"name":"exogenous antibiotic catabolic process","synonyms":[{"name":"exogenous antibiotic breakdown","type":"exact"},{"name":"exogenous antibiotic catabolism","type":"exact"},{"name":"exogenous antibiotic degradation","type":"exact"}],"termid":"GO:0042740"}


id: PBO:0058617
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 6749","termid":"PBO:0058617"}


id: PBO:0051590
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"interleukin 20 receptor subunit beta","termid":"PBO:0051590"}


id: PBO:0049177
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"growth regulating estrogen receptor binding 1","termid":"PBO:0049177"}


id: PR:P87059
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A mitochondrial intermembrane space import and assembly protein 40 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx","PANTHER:PTHR21622:SF0"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial intermembrane space import and assembly protein 40 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC57A10.11c","secondary_identifiers":["UniProtKB:P87059"],"synonyms":[{"name":"SPAC57A10.11c","type":"related"},{"name":"Spom972h-CHCHD4","type":"exact"},{"name":"mitochondrial import inner membrane translocase TIM40 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"tim40","type":"related"}],"termid":"PR:P87059"}


id: PR:Q9Y7S8
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  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- dbl1 gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q9Y7S8"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized protein C2H8.05c (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC2H8.05c","synonyms":[{"name":"Spom972h-dbl1","type":"exact"}],"termid":"PR:Q9Y7S8"}


id: GO:0062146
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 4-chloro-L-lysine + AH2 + O2 = A + formaldehyde + H2O + L-2-amino-4-chloropent-4-enoate + NH4(+).","definition_xrefs":["RHEA:59888","PMID:30867596"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen","termid":"GO:0016705"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016491"],"is_obsolete":false,"name":"4-chloro-allylglycine synthase activity","termid":"GO:0062146"}


id: GO:0015849
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id: PBO:0110101
data:
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id: FYPO:0004259
data:
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id: PBO:0087568
data:
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id: PBO:0064038
data:
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id: GO:1902087
data:
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id: PBO:0029653
data:
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id: PBO:0057884
data:
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id: PBO:0066961
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RN7SK pseudogene 263","termid":"PBO:0066961"}


id: PBO:0002473
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Nramp family manganese ion transporter","termid":"PBO:0002473"}


id: PBO:0034671
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id: PBO:0046661
data:
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id: FYPO:0000631
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id: PBO:0073926
data:
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id: PBO:0004573
data:
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id: MOD:00044
data:
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id: PATO:0000471
data:
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id: PBO:0005005
data:
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id: FYPO:0003459
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of trehalose measured in a cell is lower than normal when the cell is subject to salt stress.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased level of substance in cell during vegetative growth","termid":"FYPO:0001329"},{"relation_name":"is_a","term_name":"decreased cellular trehalose level","termid":"FYPO:0001447"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000002","FYPO:0001320"],"is_obsolete":false,"name":"decreased cellular trehalose level during cellular response to salt stress","synonyms":[{"name":"decreased cellular trehalose level during cellular response to salt stress during mitotic cell cycle","type":"related"},{"name":"decreased cellular trehalose level during vegetative growth and during cellular response to salt stress","type":"exact"},{"name":"decreased cellular trehalose level in response to salt stress","type":"exact"},{"name":"decreased trehalose accumulation during cellular response to salt stress","type":"related"},{"name":"reduced cellular trehalose level during cellular response to salt stress","type":"exact"}],"termid":"FYPO:0003459"}


id: PBO:0038366
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-has_component_process","termid":"PBO:0038366"}


id: PBO:0041566
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chromosome 20 open reading frame 96","termid":"PBO:0041566"}


id: PBO:0002271
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"diphthamide biosynthesis protein Dph4 (predicted)","termid":"PBO:0002271"}


id: PBO:0031724
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-delayed_onset_of_meiotic_recombination","termid":"PBO:0031724"}


id: PBO:0065142
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"prolactin releasing hormone","termid":"PBO:0065142"}


id: PBO:0018191
data:
  {"annotation_feature_type":"gene","cv_name":"disease_associated","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Neuromyotonia","termid":"PBO:0018191"}


id: PBO:0074700
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nucleolar RNA, H/ACA box 70J","termid":"PBO:0074700"}


id: PBO:0055647
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 3086","termid":"PBO:0055647"}


id: PBO:0002798
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"centrosomal transforming acidic coiled-coil (TACC) protein ortholog Alp7","termid":"PBO:0002798"}


id: PBO:0045941
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ephrin B1","termid":"PBO:0045941"}


id: GO:0033128
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that stops, prevents, or reduces the frequency, rate or extent of the addition of one or more phosphate groups to a histone protein.","definition_xrefs":["GOC:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete negative regulation of histone phosphorylation (obsolete GO:0033128)","termid":"GO:0033128"}


id: GO:0047990
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 3-hydroxy-L-glutamate + H+ = 4-amino-3-hydroxybutanoate + CO2.","definition_xrefs":["EC:4.1.1.16","RHEA:14073"],"direct_ancestors":[{"relation_name":"is_a","term_name":"carboxy-lyase activity","termid":"GO:0016831"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016829"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0016829","GO:0003824"],"is_obsolete":false,"name":"hydroxyglutamate decarboxylase activity","secondary_identifiers":["MetaCyc:HYDROXYGLUTAMATE-DECARBOXYLASE-RXN","KEGG_REACTION:R04135"],"synonyms":[{"name":"3-hydroxy-L-glutamate 1-carboxy-lyase (4-amino-3-hydroxybutanoate-forming)","type":"related"},{"name":"3-hydroxy-L-glutamate 1-carboxy-lyase activity","type":"related"}],"termid":"GO:0047990"}


id: PBO:0003281
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial NADH dehydrogenase (predicted)","termid":"PBO:0003281"}


id: GO:0051849
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any mechanism of active immune avoidance which works by regulating the symbiont's antigen processing or presentation pathways, e.g. by blocking any stage in MHC class II presentation. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction.","definition_xrefs":["PMID:12439615"],"gene_count":0,"genotype_count":0,"name":"obsolete active evasion of symbiont immune response via regulation of symbiont antigen processing and presentation (obsolete GO:0051849)","synonyms":[{"name":"active evasion of symbiont immune response via regulation of symbiont antigen processing and presentation","type":"exact"},{"name":"active evasion of symbiont immune response via regulation of symbiont antigen processing and presentation pathway","type":"exact"},{"name":"active immune evasion via modulation of symbiont antigen processing and presentation","type":"exact"},{"name":"active immune evasion via modulation of symbiont antigen processing/presentation","type":"exact"},{"name":"active immune evasion via regulation of symbiont antigen processing or presentation","type":"exact"}],"termid":"GO:0051849"}


id: PBO:0091465
data:
  {"annotation_feature_type":"gene","cv_name":"cat_act","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"L-glutamine substrate KM 800 uM, 2-oxoglutarate substrate KM 9 uM, NADH substrate KM 11 uM, pH optimum 6.4","termid":"PBO:0091465"}


id: PBO:0049884
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"HERC2 pseudogene 3","termid":"PBO:0049884"}


id: PBO:0110813
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DNA-binding transcription factor, phosphate starvation genes Pho7","termid":"PBO:0110813"}


id: PBO:0049418
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"GTP binding elongation factor GUF1","termid":"PBO:0049418"}


id: MOD:00334
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively results from forming an adduct between the tele nitrogen of a histidine residue and the porphyrin compound heme b, (7,12-diethenyl-3,8,13,17-tetramethylporphyrin-2,18-dipropanoato)iron.","definition_xrefs":["PubMed:12033922","PubMed:12121092","Unimod:390#H","RESID:AA0329"],"direct_ancestors":[{"relation_name":"is_a","term_name":"porphyrin modified residue","termid":"MOD:00699"},{"relation_name":"is_a","term_name":"metal or metal cluster coordinated L-histidine residue","termid":"MOD:02070"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"1'-heme-L-histidine","synonyms":[{"name":"(S)-[7-ethenyl-12-[1-((2-amino-2-carboxyethyl)-1H-imidazol-1-yl)ethyl]-3,8,13,17-tetramethyl-21H,23H-porphine-2,18-bis(2-carboxyethyl)-N21,N22,N23,N24]-ferrate","type":"exact"},{"name":"1'-heme-L-histidine","type":"exact"},{"name":"2-[1-(N1'-histidyl)ethyl]protoporphyrin IX","type":"exact"},{"name":"BINDING Heme (covalent; via tele nitrogen)","type":"exact"},{"name":"Heme","type":"related"},{"name":"N(epsilon)-histidyl heme","type":"exact"},{"name":"N(tau)-histidyl heme","type":"exact"},{"name":"N1'-histidyl heme","type":"exact"},{"name":"heme","type":"related"},{"name":"tele-histidyl heme","type":"exact"}],"termid":"MOD:00334"}


id: GO:0043489
data:
  {"annotated_genes":["SJAG_00797","SJAG_03283","SJAG_04586","SJAG_04825","SJAG_04946","SJAG_02573","SJAG_03696"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[96268,114448,86422,77609],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0070935"},{"annotations":[92445,85712],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0048255"},{"annotations":[86861],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0090669"}]},"cv_name":"biological_process","definition":"Prevention of degradation of RNA molecules.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of RNA stability","termid":"GO:0043487"},{"relation_name":"is_a","term_name":"negative regulation of RNA catabolic process","termid":"GO:1902369"}],"gene_count":7,"genes_by_uniquename":{"SJAG_00797":null,"SJAG_02573":null,"SJAG_03283":null,"SJAG_03696":null,"SJAG_04586":null,"SJAG_04825":null,"SJAG_04946":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"negatively_regulates","termid":"GO:0044248"},{"rel_name":"regulates","termid":"GO:0044248"}],"interesting_parent_ids":["GO:0044248","GO:0008150","GO:0010467"],"is_obsolete":false,"name":"RNA stabilization","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"termid":"GO:0043489","terms_by_termid":{"GO:0048255":null,"GO:0070935":null,"GO:0090669":null}}


id: PBO:0061385
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nucleophosmin 1 pseudogene 45","termid":"PBO:0061385"}


id: GO:0019328
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of gallate, the anion of gallic acid, in the absence of oxygen.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"gallate catabolic process","termid":"GO:0019396"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0044248"}],"interesting_parent_ids":["GO:0044281","GO:0044248","GO:0008150"],"is_obsolete":false,"name":"anaerobic gallate catabolic process","secondary_identifiers":["MetaCyc:P3-PWY"],"synonyms":[{"name":"anaerobic gallate breakdown","type":"exact"},{"name":"anaerobic gallate catabolism","type":"exact"},{"name":"anaerobic gallate degradation","type":"exact"},{"name":"anaerobic gallic acid catabolic process","type":"exact"},{"name":"anaerobic gallic acid catabolism","type":"exact"},{"name":"gallate fermentation","type":"exact"}],"termid":"GO:0019328"}


id: PBO:0014267
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"aminotransferase class-III, possible transaminase, unknown specificity","termid":"PBO:0014267"}


id: GO:0048809
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which the anatomical structures of analia are generated and organized. The analia is the posterior-most vertral appendage that develops from the genital disc. An example of this process is analia morphogenesis in Drosophila melanogaster.","definition_xrefs":["GOC:ai","GOC:mtg_sensu"],"direct_ancestors":[{"relation_name":"is_a","term_name":"post-embryonic animal morphogenesis","termid":"GO:0009886"},{"relation_name":"part_of","term_name":"genital disc morphogenesis","termid":"GO:0007483"},{"relation_name":"part_of","term_name":"analia development","termid":"GO:0007487"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"analia morphogenesis","termid":"GO:0048809"}


id: PBO:0059232
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial ribosomal protein L3","termid":"PBO:0059232"}


id: GO:0043693
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of monoterpenes, terpenes with a C10 structure.","definition_xrefs":["Wikipedia:Monoterpene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"monoterpene metabolic process","termid":"GO:0043692"},{"relation_name":"is_a","term_name":"terpene biosynthetic process","termid":"GO:0046246"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006629"}],"interesting_parent_ids":["GO:0008150","GO:0006629"],"is_obsolete":false,"name":"monoterpene biosynthetic process","synonyms":[{"name":"monoterpene biosynthesis","type":"exact"}],"termid":"GO:0043693"}


id: PBO:0052382
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"KIF23 and PAQR5 antisense RNA 1","termid":"PBO:0052382"}


id: GO:2000960
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of cellooligosaccharide metabolic process.","definition_xrefs":["GOC:mengo_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of carbohydrate metabolic process","termid":"GO:0006109"},{"relation_name":"regulates","term_name":"cellooligosaccharide metabolic process","termid":"GO:2000902"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0005975"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0005975","GO:0008150"],"is_obsolete":false,"name":"regulation of cellooligosaccharide metabolic process","synonyms":[{"name":"regulation of cellooligosaccharide metabolism","type":"exact"}],"termid":"GO:2000960"}


id: PBO:0091425
data:
  {"annotation_feature_type":"gene","cv_name":"subunit_composition","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tetrameric(1)","termid":"PBO:0091425"}


id: _global:has_functional_parent
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"'Entity A' has_functional_parent 'Entity B' implies that 'Entity B' has at least one chacteristic group from which 'Entity A' can be derived by functional modification.","definition_xrefs":["PubMed:18688235"],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"has_functional_parent","termid":"_global:has_functional_parent"}


id: PBO:0053444
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 391","termid":"PBO:0053444"}


id: GO:0017178
data:
  {"annotated_genes":["SJAG_04544"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[107355],"is_not":false,"summary":null,"term":"GO:0017178"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: ATP + diphthine + NH4 = ADP + diphthamide + H+ + phosphate.","definition_xrefs":["EC:6.3.1.14","RHEA:19753"],"direct_ancestors":[{"relation_name":"is_a","term_name":"acid-ammonia (or amide) ligase activity","termid":"GO:0016880"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04544":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016874"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0016874","GO:0003824"],"is_obsolete":false,"name":"diphthine-ammonia ligase activity","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["Reactome:R-HSA-5358475","KEGG_REACTION:R03613","MetaCyc:DIPHTINE--AMMONIA-LIGASE-RXN"],"synonyms":[{"name":"diphthamide synthase activity","type":"related"},{"name":"diphthamide synthetase activity","type":"related"},{"name":"diphthine:ammonia ligase (ADP-forming)","type":"related"}],"termid":"GO:0017178","terms_by_termid":{"GO:0017178":null}}


id: PBO:0090851
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"elongator complex WD repeat protein Elp2","termid":"PBO:0090851"}


id: GO:0033792
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reactions: a 3alpha-hydroxy bile acid CoA + NAD+ = a 3-oxo bile acid CoA + H+ + NADH.","definition_xrefs":["PMID:23836456","RHEA:55380"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor","termid":"GO:0016616"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003824","GO:0016491","GO:0003674"],"is_obsolete":false,"name":"3alpha-hydroxy bile acid-CoA-ester 3-dehydrogenase activity","secondary_identifiers":["EC:1.1.1.395"],"synonyms":[{"name":"7alpha-dehydroxylase activity","type":"related"},{"name":"bile acid 7-dehydroxylase activity","type":"related"},{"name":"bile-acid 7alpha-dehydroxylase activity","type":"related"},{"name":"cholate 7alpha-dehydroxylase activity","type":"related"}],"termid":"GO:0033792"}


id: PBO:0084146
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"High affinity iron permease; involved in the transport of iron across the plasma membrane; forms complex with Fet3p; expression is regulated by iron; protein abundance increases in response to DNA replication stress","termid":"PBO:0084146"}


id: GO:0039577
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process in which a virus stops, prevents, or reduces the frequency, rate or extent of host JAK1 (Janus Kinase 1) activity by stopping, preventing or reducing tyrosine phosphorylation of JAK1 and thereby activation of JAK1.","definition_xrefs":["PMID:12620806"],"gene_count":0,"genotype_count":0,"name":"obsolete suppression by virus of host JAK1 activity by negative regulation of JAK1 phosphorylation (obsolete GO:0039577)","termid":"GO:0039577"}


id: MOD:01497
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively replaces an O3-hydrogen atom of a serine residue with the Applied Biosystems iTRAQ4plex-115 reporter+balance group.","definition_xrefs":["PubMed:18688235"],"direct_ancestors":[{"relation_name":"is_a","term_name":"iTRAQ4plex-115 reporter+balance reagent acylated residue","termid":"MOD:01492"},{"relation_name":"is_a","term_name":"iTRAQ4plex reporter+balance reagent O-acylated residue","termid":"MOD:01713"},{"relation_name":"is_a","term_name":"O3-acylated L-serine","termid":"MOD:02003"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:00649"}],"interesting_parent_ids":["MOD:00649"],"is_obsolete":false,"name":"iTRAQ4plex-115 reporter+balance reagent O3-acylated serine","synonyms":[{"name":"(4-methylpiperazin-1-yl)acetyl","type":"exact"},{"name":"iTRAQ4plex115","type":"related"}],"termid":"MOD:01497"}


id: GO:0035576
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The series of molecular signals generated as a consequence of a retinoic acid receptor binding to one of its physiological ligands that results in regions of the embryo being delineated into the area in which the pronephric kidney will develop.","definition_xrefs":["GOC:bf","PMID:16979153","PMID:19909807"],"direct_ancestors":[{"relation_name":"is_a","term_name":"retinoic acid receptor signaling pathway","termid":"GO:0048384"},{"relation_name":"part_of","term_name":"pronephric field specification","termid":"GO:0039003"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"retinoic acid receptor signaling pathway involved in pronephric field specification","synonyms":[{"name":"retinoic acid receptor signalling pathway involved in pronephric field specification","type":"exact"}],"termid":"GO:0035576"}


id: PBO:0083040
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Delta subunit of the oligosaccharyl transferase glycoprotein complex; complex is required for N-linked glycosylation of proteins in the endoplasmic reticulum","termid":"PBO:0083040"}


id: PBO:0067504
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 644, pseudogene","termid":"PBO:0067504"}


id: PBO:0056433
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MARK2 pseudogene 6","termid":"PBO:0056433"}


id: PBO:0012301
data:
  {"annotation_feature_type":"gene","cv_name":"complementation","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"functionally complements S. cerevisiae SRV2","termid":"PBO:0012301"}


id: PBO:0070868
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RPL14 pseudogene 6","termid":"PBO:0070868"}


id: GO:0008370
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"OBSOLETE. These are terms that have been removed from the active component ontology.","definition_xrefs":["GOC:go_curators"],"gene_count":0,"genotype_count":0,"name":"obsolete cellular component (obsolete GO:0008370)","termid":"GO:0008370"}


id: PBO:0045796
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"EDIL3 divergent transcript","termid":"PBO:0045796"}


id: PR:Q9USJ2
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPCC4B3.02c gene.","definition_xrefs":["UniProtKB:Q9USJ2","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protein transport protein got1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC4B3.02c","synonyms":[{"name":"Golgi transport protein 1 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-SPCC4B3.02c","type":"exact"}],"termid":"PR:Q9USJ2"}


id: PBO:0049702
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"highly accelerated region 1B","termid":"PBO:0049702"}


id: PBO:0109388
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"testis expressed transcript, Y-linked 17C","termid":"PBO:0109388"}


id: GO:0072089
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The multiplication or reproduction of stem cells, resulting in the expansion of a stem cell population. A stem cell is a cell that retains the ability to divide and proliferate throughout life to provide progenitor cells that can differentiate into specialized cells.","definition_xrefs":["GOC:mtg_kidney_jan10"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell population proliferation","termid":"GO:0008283"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"stem cell proliferation","termid":"GO:0072089"}


id: PBO:0054119
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1485","termid":"PBO:0054119"}


id: PBO:0039603
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"acidic nuclear phosphoprotein 32 family member C","termid":"PBO:0039603"}


id: PBO:0051361
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"immunoglobulin kappa variable 3-11","termid":"PBO:0051361"}


id: GO:0048705
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which the anatomical structures of the skeleton are generated and organized.","definition_xrefs":["GOC:jid","GOC:tb","GOC:dph","GOC:dsf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"animal organ morphogenesis","termid":"GO:0009887"},{"relation_name":"part_of","term_name":"skeletal system development","termid":"GO:0001501"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"skeletal system morphogenesis","synonyms":[{"name":"skeletal morphogenesis","type":"exact"}],"termid":"GO:0048705"}


id: PBO:0088637
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"19S proteasome regulatory subunit Rpn6","termid":"PBO:0088637"}


id: PBO:0041506
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chromosome 14 open reading frame 28","termid":"PBO:0041506"}


id: FYPO:0008142
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype in which the amount heme measured in a cell is too low to detect.","definition_xrefs":["PMID:11248251"],"direct_ancestors":[{"relation_name":"is_a","term_name":"substance absent from cell","termid":"FYPO:0001888"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000002"],"is_obsolete":false,"name":"heme absent from cell","termid":"FYPO:0008142"}


id: PBO:0052581
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"kinetochore scaffold 1","termid":"PBO:0052581"}


id: PATO:0001182
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0001182 relative response (obsolete PATO:0001182)","termid":"PATO:0001182"}


id: PBO:0080592
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"WD repeat domain 19","termid":"PBO:0080592"}


id: GO:0010726
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that increases the frequency, rate or extent of the chemical reactions and pathways involving hydrogen peroxide.","definition_xrefs":["GOC:tb","GOC:hjd","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of hydrogen peroxide metabolic process","termid":"GO:0010310"},{"relation_name":"is_a","term_name":"positive regulation of reactive oxygen species metabolic process","termid":"GO:2000379"},{"relation_name":"positively_regulates","term_name":"hydrogen peroxide metabolic process","termid":"GO:0042743"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of hydrogen peroxide metabolic process","synonyms":[{"name":"positive regulation of hydrogen peroxide metabolism","type":"exact"}],"termid":"GO:0010726"}


id: PBO:0029935
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-inviable_after_spore_germination,_multiple_cell_divisions,_spheroid_cell","termid":"PBO:0029935"}


id: GO:0061537
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The controlled release of glycine by a cell, in which glycine acts as a neurotransmitter.","definition_xrefs":["GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"neurotransmitter secretion","termid":"GO:0007269"},{"relation_name":"is_a","term_name":"glycine secretion","termid":"GO:0061536"},{"relation_name":"part_of","term_name":"synaptic transmission, glycinergic","termid":"GO:0060012"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0008150","GO:0006810","GO:0051179","GO:0023052"],"is_obsolete":false,"name":"glycine secretion, neurotransmission","termid":"GO:0061537"}


id: MOD:00793
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-cysteine residue to dehydroalanine.","definition_xrefs":["PubMed:11212008","PubMed:15799070","DeltaMass:8","PubMed:8239649","PubMed:7947813","RESID:AA0181#CYS","Unimod:368","PubMed:20805503","ChEBI:17123","PubMed:1547888","PubMed:1815586","PubMed:2914619","PubMed:10220322"],"direct_ancestors":[{"relation_name":"is_a","term_name":"modified L-cysteine residue","termid":"MOD:00905"},{"relation_name":"is_a","term_name":"dehydroalanine","termid":"MOD:01168"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dehydroalanine (Cys)","synonyms":[{"name":"2,3-didehydroalanine","type":"exact"},{"name":"2-aminoacrylic acid","type":"exact"},{"name":"2-aminopropenoic acid","type":"exact"},{"name":"4-methylidene-imidazole-5-one (MIO) active site","type":"exact"},{"name":"Cys->Dha","type":"related"},{"name":"Dehydroalanine (from Cysteine)","type":"exact"},{"name":"Dha","type":"exact"},{"name":"MOD_RES 2,3-didehydroalanine (Cys)","type":"exact"},{"name":"anhydroserine","type":"exact"},{"name":"dHAla(Cys)","type":"exact"},{"name":"dehydroalanine","type":"exact"}],"termid":"MOD:00793"}


id: PBO:0047723
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"FMR1 antisense RNA 1","termid":"PBO:0047723"}


id: PBO:0069133
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 383, pseudogene","termid":"PBO:0069133"}


id: GO:1901817
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of beta-zeacarotene.","definition_xrefs":["GOC:TermGenie","UniPathway:UPA00805","GOC:yaf","PMID:3710717"],"direct_ancestors":[{"relation_name":"is_a","term_name":"carotenoid catabolic process","termid":"GO:0016118"},{"relation_name":"is_a","term_name":"carotene catabolic process","termid":"GO:0016121"},{"relation_name":"is_a","term_name":"beta-zeacarotene metabolic process","termid":"GO:1901816"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044248"},{"rel_name":"is_a","termid":"GO:0006629"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0044248","GO:0006629","GO:0008150"],"is_obsolete":false,"name":"beta-zeacarotene catabolic process","synonyms":[{"name":"beta-zeacarotene breakdown","type":"exact"},{"name":"beta-zeacarotene catabolism","type":"exact"},{"name":"beta-zeacarotene degradation","type":"exact"}],"termid":"GO:1901817"}


id: PBO:0053126
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"LCORL pseudogene 1","termid":"PBO:0053126"}


id: PBO:0073771
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"solute carrier family 4 member 4","termid":"PBO:0073771"}


id: PBO:0091302
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial hydrolase, N-terminal portion of Crd1 fusion protein","termid":"PBO:0091302"}


id: PBO:0064684
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"peptidylprolyl isomerase A pseudogene 20","termid":"PBO:0064684"}


id: GO:0019454
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown, via the compound cystine, of L-cysteine, catalyzed by the enzyme glutathione-cystine transhydrogenase.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"L-cysteine catabolic process via cystine","termid":"GO:0019453"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006520"},{"rel_name":"is_a","termid":"GO:0006790"},{"rel_name":"is_a","termid":"GO:0044248"}],"interesting_parent_ids":["GO:0008150","GO:0044281","GO:0006790","GO:0044248","GO:0006520"],"is_obsolete":false,"name":"L-cysteine catabolic process via cystine, using glutathione-cystine transhydrogenase","synonyms":[{"name":"L-cysteine breakdown via cystine, using glutathione-cystine transhydrogenase","type":"exact"},{"name":"L-cysteine degradation via cystine, using glutathione-cystine transhydrogenase","type":"exact"}],"termid":"GO:0019454"}


id: PBO:0028415
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_frequency_of_meiosis_I","termid":"PBO:0028415"}


id: GO:0090538
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The regulated release of a peptide pheromone from a cell.","definition_xrefs":["GOC:vw","GOC:tb","GOC:al"],"direct_ancestors":[{"relation_name":"is_a","term_name":"peptide pheromone export","termid":"GO:0000770"},{"relation_name":"is_a","term_name":"peptide hormone secretion","termid":"GO:0030072"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"part_of","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0051179"}],"interesting_parent_ids":["GO:0023052","GO:0051179","GO:0006810","GO:0008150"],"is_obsolete":false,"name":"peptide pheromone secretion","termid":"GO:0090538"}


id: FYPO:0005042
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype in which the localization of a protein to the kinetochore of a chromosome is normal (i.e. indistinguishable from wild type).","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal protein localization to centromere","termid":"FYPO:0007853"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0000138","FYPO:0000257","FYPO:0000002"],"is_obsolete":false,"name":"normal protein localization to kinetochore","synonyms":[{"name":"normal protein localisation to kinetochore","type":"exact"}],"termid":"FYPO:0005042"}


