# terms

id: PBO:0027323
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_cellular_mtDNA_level","termid":"PBO:0027323"}


id: PBO:0036251
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Nrd1 complex RNA-binding subunit Seb1","termid":"PBO:0036251"}


id: PBO:0076225
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SPT6 homolog, histone chaperone and transcription elongation factor","termid":"PBO:0076225"}


id: GO:0006984
data:
  {"annotated_genes":["SJAG_03345","SJAG_03501","SJAG_02682","SJAG_03302","SJAG_00642","SJAG_01585","SJAG_01150","SJAG_00293","SJAG_04573","SJAG_02104","SJAG_01632","SJAG_01307","SJAG_02703","SJAG_02318","SJAG_01657","SJAG_04384","SJAG_05286","SJAG_05304","SJAG_01253","SJAG_04018","SJAG_04151","SJAG_00718","SJAG_03568"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[113019],"is_not":false,"summary":null,"term":"GO:0006984"},{"annotations":[107876,87419,102045],"is_not":false,"rel_names":["regulates","negatively_regulates"],"summary":null,"term":"GO:2000639"},{"annotations":[89862,89861,89863,109604,109605,113128,109603],"is_not":false,"rel_names":["positively_regulates","regulates"],"summary":null,"term":"GO:2000640"},{"annotations":[106025,114335,85197,108982,101990,88814,93998,112546,100131,98269,85852,114550,113130,108729,90065,85471],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0032933"}]},"cv_name":"biological_process","definition":"The series of molecular signals that conveys information from the endoplasmic reticulum to the nucleus, usually resulting in a change in transcriptional regulation.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"signal transduction","termid":"GO:0007165"}],"gene_count":23,"genes_by_uniquename":{"SJAG_00293":null,"SJAG_00642":null,"SJAG_00718":null,"SJAG_01150":null,"SJAG_01253":null,"SJAG_01307":null,"SJAG_01585":null,"SJAG_01632":null,"SJAG_01657":null,"SJAG_02104":null,"SJAG_02318":null,"SJAG_02682":null,"SJAG_02703":null,"SJAG_03302":null,"SJAG_03345":null,"SJAG_03501":null,"SJAG_03568":null,"SJAG_04018":null,"SJAG_04151":null,"SJAG_04384":null,"SJAG_04573":null,"SJAG_05286":null,"SJAG_05304":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"ER-nucleus signaling pathway","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"ER to nucleus signaling pathway","type":"exact"},{"name":"ER to nucleus signalling pathway","type":"exact"},{"name":"ER-nuclear signaling pathway","type":"exact"},{"name":"ER-nuclear signalling pathway","type":"exact"},{"name":"endoplasmic reticulum to nucleus signaling pathway","type":"exact"},{"name":"endoplasmic reticulum-nuclear signaling pathway","type":"exact"}],"termid":"GO:0006984","terms_by_termid":{"GO:0006984":null,"GO:0032933":null,"GO:2000639":null,"GO:2000640":null}}


id: GO:0042965
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The chemical reactions and pathways resulting in the formation of a small disulfide-containing redox protein that serves as a glutathione-disulfide oxidoreductase.","definition_xrefs":["GOC:go_curators"],"gene_count":0,"genotype_count":0,"name":"obsolete glutaredoxin biosynthetic process (obsolete GO:0042965)","synonyms":[{"name":"glutaredoxin anabolism","type":"exact"},{"name":"glutaredoxin biosynthesis","type":"exact"},{"name":"glutaredoxin formation","type":"exact"},{"name":"glutaredoxin synthesis","type":"exact"}],"termid":"GO:0042965"}


id: SO:0005855
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A collection of related genes.","definition_xrefs":["SO:ma"],"direct_ancestors":[{"relation_name":"is_a","term_name":"biological_region","termid":"SO:0001411"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"gene_group","synonyms":[{"name":"gene group","type":"exact"}],"termid":"SO:0005855"}


id: PBO:0058295
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 4669","termid":"PBO:0058295"}


id: GO:0009326
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"An enzyme complex that catalyzes the dehydrogenation of formate to produce carbon dioxide (CO2).","definition_xrefs":["PMID:1504073","PMID:8566699"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase complex","termid":"GO:1990204"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575","GO:0032991"],"is_obsolete":false,"name":"formate dehydrogenase complex","termid":"GO:0009326"}


id: GO:0071615
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The process of removing one or more ethyl groups from a molecule, involving the oxidation (i.e. electron loss) of one or more atoms in the substrate.","definition_xrefs":["GOC:mah","GOC:BHF","GOC:rl"],"gene_count":0,"genotype_count":0,"name":"obsolete oxidative deethylation (obsolete GO:0071615)","termid":"GO:0071615"}


id: GO:0043296
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A functional unit located near the cell apex at the points of contact between epithelial cells, which in vertebrates is composed of the tight junction, the zonula adherens, and desmosomes and in some invertebrates, such as Drosophila, is composed of the subapical complex (SAC), the zonula adherens and the septate junction. Functions in the regulation of cell polarity, tissue integrity and intercellular adhesion and permeability.","definition_xrefs":["PMID:12525486","GOC:go_curators","GOC:kmv","PMID:15196556"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell-cell junction","termid":"GO:0005911"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"apical junction complex","synonyms":[{"name":"apical cell junction complex","type":"exact"},{"name":"apical junction","type":"exact"}],"termid":"GO:0043296"}


id: GO:0001598
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. (Was not defined before being made obsolete).","definition_xrefs":["GOC:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete chemokine receptor-like receptor activity (obsolete GO:0001598)","synonyms":[{"name":"chemokine receptor-like receptor activity","type":"exact"}],"termid":"GO:0001598"}


id: PBO:0041239
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"C1orf100 pseudogene 1","termid":"PBO:0041239"}


id: GO:0045918
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of cytolysis.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of cytolysis","termid":"GO:0042268"},{"relation_name":"is_a","term_name":"negative regulation of cellular process","termid":"GO:0048523"},{"relation_name":"negatively_regulates","term_name":"cytolysis","termid":"GO:0019835"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of cytolysis","synonyms":[{"name":"down regulation of cytolysis","type":"exact"},{"name":"down-regulation of cytolysis","type":"exact"},{"name":"downregulation of cytolysis","type":"exact"},{"name":"inhibition of cytolysis","type":"narrow"}],"termid":"GO:0045918"}


id: GO:1905896
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that activates or increases the frequency, rate or extent of cellular response to tunicamycin.","definition_xrefs":["GOC:TermGenie","GOC:aruk","PMID:21803450","GO_REF:0000058","GOC:bc"],"gene_count":0,"genotype_count":0,"name":"obsolete positive regulation of cellular response to tunicamycin (obsolete GO:1905896)","synonyms":[{"name":"activation of cellular response to tunicamycin","type":"narrow"},{"name":"up regulation of cellular response to tunicamycin","type":"exact"},{"name":"up-regulation of cellular response to tunicamycin","type":"exact"},{"name":"upregulation of cellular response to tunicamycin","type":"exact"}],"termid":"GO:1905896"}


id: PBO:0029671
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-multiple_actomyosin_contractile_rings_present","termid":"PBO:0029671"}


id: GO:0140974
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process carried out at the cellular level that reduces or removes the toxicity of a sulfide. These may include chemical modification or transport of sulfide away from sensitive areas and to compartments or complexes whose purpose is sequestration of the toxic substance.","definition_xrefs":["PMID:20077566","PMID:25747485"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular detoxification","termid":"GO:1990748"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0098754"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0098754"],"is_obsolete":false,"name":"cellular detoxification of sulfide","termid":"GO:0140974"}


id: GO:0001098
data:
  {"annotated_genes":["SJAG_01610","SJAG_01151","SJAG_03118","SJAG_04353","SJAG_02691","SJAG_00483","SJAG_00159","SJAG_00448","SJAG_01707","SJAG_04933","SJAG_00139","SJAG_00095"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[64356],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0099122"},{"annotations":[71543,76960],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1990269"},{"annotations":[77636,75195,70069,71224,77655],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0000993"},{"annotations":[75472,77339],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0001139"},{"annotations":[78101],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0001096"},{"annotations":[75268],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0001097"}]},"cv_name":"molecular_function","definition":"Binding to a component of the basal transcription machinery which is composed of the RNA polymerase core enzyme and the basal transcription factor(s), the minimal set of factors required for formation of the preinitiation complex (PIC) by the RNA polymerase.","definition_xrefs":["GOC:txnOH"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein binding","termid":"GO:0005515"}],"gene_count":12,"genes_by_uniquename":{"SJAG_00095":null,"SJAG_00139":null,"SJAG_00159":null,"SJAG_00448":null,"SJAG_00483":null,"SJAG_01151":null,"SJAG_01610":null,"SJAG_01707":null,"SJAG_02691":null,"SJAG_03118":null,"SJAG_04353":null,"SJAG_04933":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005515"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005488"}],"interesting_parent_ids":["GO:0005515","GO:0003674","GO:0005488"],"is_obsolete":false,"name":"basal transcription machinery binding","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000033":null},"termid":"GO:0001098","terms_by_termid":{"GO:0000993":null,"GO:0001096":null,"GO:0001097":null,"GO:0001139":null,"GO:0099122":null,"GO:1990269":null}}


id: GO:0050013
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 2-dehydropantoate = 3-methyl-2-oxobutanoate + formaldehyde.","definition_xrefs":["MetaCyc:KETOPANTOALDOLASE-RXN","EC:4.1.2.12"],"direct_ancestors":[{"relation_name":"is_a","term_name":"aldehyde-lyase activity","termid":"GO:0016832"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016829"}],"interesting_parent_ids":["GO:0016829","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"2-dehydropantoate aldolase activity","secondary_identifiers":["RHEA:23276"],"synonyms":[{"name":"2-dehydropantoate formaldehyde-lyase (3-methyl-2-oxobutanoate-forming)","type":"related"},{"name":"2-dehydropantoate formaldehyde-lyase activity","type":"related"},{"name":"ketopantoaldolase activity","type":"exact"}],"termid":"GO:0050013"}


id: GO:1901316
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that activates or increases the frequency, rate or extent of histone H2A K63-linked ubiquitination.","definition_xrefs":["GOC:TermGenie"],"gene_count":0,"genotype_count":0,"name":"obsolete positive regulation of histone H2A K63-linked ubiquitination (obsolete GO:1901316)","synonyms":[{"name":"activation of histone H2A K63-linked ubiquitination","type":"narrow"},{"name":"up regulation of histone H2A K63-linked ubiquitination","type":"exact"},{"name":"up-regulation of histone H2A K63-linked ubiquitination","type":"exact"},{"name":"upregulation of histone H2A K63-linked ubiquitination","type":"exact"}],"termid":"GO:1901316"}


id: PBO:0067252
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 326, pseudogene","termid":"PBO:0067252"}


id: PBO:0064821
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protein phosphatase 1 regulatory subunit 3C","termid":"PBO:0064821"}


id: PBO:0081057
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger CCHC-type containing 14","termid":"PBO:0081057"}


id: PBO:0038971
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ADORA2A antisense RNA 1","termid":"PBO:0038971"}


id: PBO:0040039
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"acidic residue methyltransferase 1","termid":"PBO:0040039"}


id: PBO:0086785
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Putative protein of unknown function; the authentic, non-tagged protein is detected in highly purified mitochondria in high-throughput studies","termid":"PBO:0086785"}


id: PBO:0073407
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SET pseudogene 10","termid":"PBO:0073407"}


id: PR:Q9USJ1
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A 3-mercaptopyruvate sulfurtransferase SseA that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"3-mercaptopyruvate sulfurtransferase (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC4B3.01","secondary_identifiers":["UniProtKB:Q9USJ1"],"synonyms":[{"name":"MST (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"SPCC4B3.01","type":"related"},{"name":"Spom972h-sseA","type":"exact"}],"termid":"PR:Q9USJ1"}


id: PBO:0038513
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ATP binding cassette subfamily D member 4","termid":"PBO:0038513"}


id: PBO:0028255
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_ornithine_carbamoyltransferase_activity","termid":"PBO:0028255"}


id: GO:0140737
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"Intracellular non-membrane bound organelle, consisting of proteinaceous polyhedral shells that encapsulate enzymes, protecting the contents from their surrounding milieu and/or the milieu from reactants in their interior. The self-assembling, 25-42 nm nanocompartment shell, unlike larger bacterial microcompartments, is made of only one protein, and has only a few proteins inside. Shells about vary from about 25-42 nm in diameter. The shell protein has an HK97-like fold and probably evolved from a viral protein. Artificial encapsulin nanocompartments can be expressed and filled with cargo proteins for biotechnological uses. They are found in many bacterial and a few archaeal phyla.","definition_xrefs":["PMID:32918485"],"direct_ancestors":[{"relation_name":"is_a","term_name":"intracellular non-membrane-bounded organelle","termid":"GO:0043232"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"encapsulin nanocompartment","synonyms":[{"name":"protein nanocompartment","type":"broad"}],"termid":"GO:0140737"}


id: PBO:0002328
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"40S ribosomal protein S0B","termid":"PBO:0002328"}


id: SO:0001155
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A motif of four consecutive peptide residues that may contain one H-bond, which, if present, is between the main-chain CO of the first residue and the main-chain NH of the fourth and is characterized by the dihedral angles: Residue(i+1): phi ~ -60 degrees, psi ~ -30 degrees. Residue(i+2): phi ~ -120 degrees, psi ~ 120 degrees.","definition_xrefs":["SO:cb","PMID:2371257"],"direct_ancestors":[{"relation_name":"is_a","term_name":"beta_turn","termid":"SO:0001133"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"SO:0000839"}],"interesting_parent_ids":["SO:0000839"],"is_obsolete":false,"name":"beta_turn_type_eight","synonyms":[{"name":"beta turn type eight","type":"exact"},{"name":"type VIII beta turn","type":"exact"},{"name":"type VIII turn","type":"exact"}],"termid":"SO:0001155"}


id: SO:0001456
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A relatively rare amino acid encoded by the codon UAG in some contexts, whereas UAG is a termination codon in other contexts.","definition_xrefs":["PMID:15788401"],"direct_ancestors":[{"relation_name":"is_a","term_name":"amino_acid","termid":"SO:0001237"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pyrrolysine","synonyms":[{"name":"O","type":"exact"},{"name":"Pyl","type":"exact"}],"termid":"SO:0001456"}


id: PBO:0066150
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RBBP4 pseudogene 6","termid":"PBO:0066150"}


id: PR:Q9URW3
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPAPJ691.02 gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q9URW3"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protein yippee-like PJ691.02 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAPJ691.02","synonyms":[{"name":"Spom972h-SPAPJ691.02","type":"exact"}],"termid":"PR:Q9URW3"}


id: GO:1902672
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"Any ciliary basal body that is part of a right anterior flagellum found in Giardia species (trophozoite stage).","definition_xrefs":["GOC:giardia","GOC:TermGenie","PMID:16607022","GO_REF:0000064","PMID:5961344","ISBN:9780124260207"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ciliary basal body","termid":"GO:0036064"},{"relation_name":"part_of","term_name":"right anterior flagellum","termid":"GO:0097555"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0015630"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575","GO:0015630"],"is_obsolete":false,"name":"right anterior basal body","synonyms":[{"name":"cilial basal body of right anterior cilium","type":"exact"},{"name":"cilial basal body of right anterior flagellum","type":"exact"},{"name":"ciliary basal body of right anterior cilium","type":"exact"},{"name":"ciliary basal body of right anterior flagellum","type":"exact"},{"name":"cilium basal body of right anterior cilium","type":"exact"},{"name":"cilium basal body of right anterior flagellum","type":"exact"},{"name":"microtubule basal body of right anterior cilium","type":"exact"},{"name":"microtubule basal body of right anterior flagellum","type":"exact"},{"name":"right anterior flagellum ciliary basal body","type":"exact"}],"termid":"GO:1902672"}


id: PATO:0000524
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0000524 plant growth hormone sensitivity value (obsolete PATO:0000524)","termid":"PATO:0000524"}


id: PATO:0002461
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"To bend or hang downwards due to loss of water","direct_ancestors":[{"relation_name":"is_a","term_name":"drooping","termid":"PATO:0002165"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"wilty","termid":"PATO:0002461"}


id: PBO:0072809
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sterile alpha motif domain containing 4B","termid":"PBO:0072809"}


id: PBO:0053288
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"LIMD1 antisense RNA 1","termid":"PBO:0053288"}


id: PBO:0060562
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"neurobeachin pseudogene 6","termid":"PBO:0060562"}


id: GO:0106407
data:
  {"annotated_genes":["SJAG_03280"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[83607],"is_not":false,"summary":null,"term":"GO:0106407"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: Glc(2)Man(9)GlcNAc(2)-[protein] + H2O = GlcMan(9)GlcNAc(2)-[protein] + beta-D-glucopyranose.","definition_xrefs":["PMID:30389790"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Glc3Man9GlcNAc2 oligosaccharide glucosidase activity","termid":"GO:0004573"}],"gene_count":1,"genes_by_uniquename":{"SJAG_03280":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016798"},{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016798","GO:0016787"],"is_obsolete":false,"name":"Glc2Man9GlcNAc2 oligosaccharide glucosidase activity","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"Glucosidase II","type":"broad"}],"termid":"GO:0106407","terms_by_termid":{"GO:0106407":null}}


id: PBO:0055311
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2739","termid":"PBO:0055311"}


id: PBO:0078211
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"T cell receptor beta variable 7-4","termid":"PBO:0078211"}


id: PR:Q9P7W9
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A ribonuclease P protein subunit p29 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO03472","PANTHER:PTHR13348:SF0","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribonuclease P protein subunit 1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC1703.01c","secondary_identifiers":["UniProtKB:Q9P7W9"],"synonyms":[{"name":"Spom972h-POP4","type":"exact"}],"termid":"PR:Q9P7W9"}


id: PATO:0000934
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0000934 u v light sensitivity (obsolete PATO:0000934)","termid":"PATO:0000934"}


id: PBO:0017679
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"methyltransferase with rhodanese domain (predicted)","termid":"PBO:0017679"}


id: GO:0140571
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Oxidation of Fe(3+) to Fe(2+) on the outer side of a membrane coupled to the reduction of L-ascorbate to monodehydro-L-ascorbate radical on the inner side of a membrane. Electrons get transferred across the membrane during the reaction.","definition_xrefs":["RHEA:30403","PMID:16911521","PMID:24449903"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreduction-driven active transmembrane transporter activity","termid":"GO:0015453"},{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on metal ions","termid":"GO:0016722"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0005215"}],"interesting_parent_ids":["GO:0022857","GO:0003824","GO:0005215","GO:0016491","GO:0003674"],"is_obsolete":false,"name":"transmembrane ascorbate ferrireductase activity","secondary_identifiers":["EC:7.2.1.3","MetaCyc:RXN-15598"],"synonyms":[{"name":"L-ascorbate-cytochrome-b5 reductase activity","type":"exact"},{"name":"L-ascorbate:ferricytochrome-b5 oxidoreductase activity","type":"exact"},{"name":"ascorbate-cytochrome b5 reductase activity","type":"exact"}],"termid":"GO:0140571"}


id: PBO:0074405
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SMIM10L2B antisense RNA 1","termid":"PBO:0074405"}


id: PBO:0050228
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"high mobility group nucleosomal binding domain 2 pseudogene 6","termid":"PBO:0050228"}


id: PBO:0001967
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"coenzyme A diphosphatase (predicted)","termid":"PBO:0001967"}


id: PBO:0081616
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein 544","termid":"PBO:0081616"}


id: FYPO:0004827
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell morphology phenotype observed in the vegetative growth phase of the life cycle in which a cell dies as it goes through mitosis, usually as a result of abnormal chromosome and spindle dynamics.","definition_xrefs":["PMID:16824200","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"inviable vegetative cell","termid":"FYPO:0001489"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000004"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0000004","FYPO:0000002"],"is_obsolete":false,"name":"inviable vegetative cell with cell death during mitosis","synonyms":[{"name":"inviable cell with cell death during mitosis during vegetative growth","type":"exact"},{"name":"inviable vegetative cell with cell death during mitosis during mitotic cell cycle","type":"related"},{"name":"lethal; vegetative cell with cell death during mitosis","type":"exact"}],"termid":"FYPO:0004827"}


id: GO:1901891
data:
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id: PBO:0003882
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"AAA family ATPase Gcn20 (predicted)","termid":"PBO:0003882"}


id: PR:P78921
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  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A T-complex protein 1 subunit theta that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx","OMA:SCHPO02686"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"T-complex protein 1 subunit theta (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC337.05c","secondary_identifiers":["UniProtKB:P78921"],"synonyms":[{"name":"CCT-theta (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-CCT8","type":"exact"},{"name":"TCP-1-theta (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:P78921"}


id: PBO:0065443
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PSMC2 pseudogene 2","termid":"PBO:0065443"}


id: PBO:0040230
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"activating transcription factor 4 pseudogene 2","termid":"PBO:0040230"}


id: PBO:0034711
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"autophagy associated lysophospholipase Atg15","termid":"PBO:0034711"}


id: PR:000044699
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A histone H3.1, initiator methionine removed K9-methylated form (Schizosaccharomyces pombe) whose methylation type is trimethylation. Example: UniProtKB:P09988-1, 2-136, Lys-10, MOD:00083.","definition_xrefs":["PRO:DAN","PMID:23849629"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hht1/Me(K9)","termid":"PR:000027578"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"histone H3.1, initiator methionine removed K9-trimethylated form (Schizosaccharomyces pombe)","pombase_gene_id":"SPAC1834.04","synonyms":[{"name":"Spom-hht1/InitMet-/K9me3","type":"exact"}],"termid":"PR:000044699"}


id: PATO:0002257
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A cuscpidate quality inhering in a bearer by virtue of the bearer possessing more than one cusp.","definition_xrefs":["PATOC:WD"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cuspidate","termid":"PATO:0001973"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"multicuspidate","termid":"PATO:0002257"}


id: GO:0019936
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. (Was not defined before being made obsolete).","definition_xrefs":["GOC:ceb"],"gene_count":0,"genotype_count":0,"name":"obsolete inositol phospholipid-mediated signaling (obsolete GO:0019936)","synonyms":[{"name":"inositol phospholipid-mediated signaling","type":"exact"},{"name":"inositol phospholipid-mediated signalling","type":"exact"}],"termid":"GO:0019936"}


id: PBO:0047093
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  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"family with sequence similarity 138 member E","termid":"PBO:0047093"}


id: GO:0072114
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which the anatomical structures of the pronephros are generated and organized. In mammals, the pronephros is the first of the three embryonic kidneys to be established and exists only transiently. In lower vertebrates such as fish and amphibia, the pronephros is the fully functional embryonic kidney and is indispensable for larval life.","definition_xrefs":["GOC:mtg_kidney_jan10"],"direct_ancestors":[{"relation_name":"is_a","term_name":"kidney morphogenesis","termid":"GO:0060993"},{"relation_name":"part_of","term_name":"pronephros development","termid":"GO:0048793"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"pronephros morphogenesis","synonyms":[{"name":"pronephric kidney morphogenesis","type":"exact"}],"termid":"GO:0072114"}


id: PBO:0015675
data:
  {"annotation_feature_type":"gene","cv_name":"name_description","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"FiZzy Related","termid":"PBO:0015675"}


id: PBO:0043110
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"component of inhibitor of nuclear factor kappa B kinase complex","termid":"PBO:0043110"}


id: GO:0061640
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id: GO:0052170
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process in which a symbiont inhibits or disrupts the normal execution of the innate immune response of the host organism, the host's first line of defense against infection. The host is defined as the larger of the organisms involved in a symbiotic interaction.","definition_xrefs":["GOC:mtg_pamgo_17jul06"],"direct_ancestors":[{"relation_name":"is_a","term_name":"symbiont-mediated suppression of host defenses","termid":"GO:0044414"},{"relation_name":"is_a","term_name":"symbiont-mediated perturbation of host innate immune response","termid":"GO:0052167"},{"relation_name":"is_a","term_name":"symbiont-mediated suppression of host immune response","termid":"GO:0052562"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"symbiont-mediated suppression of host innate immune response","secondary_identifiers":["GO:0052309"],"synonyms":[{"name":"down regulation by symbiont of host innate immunity","type":"exact"},{"name":"down-regulation by symbiont of host innate immunity","type":"exact"},{"name":"downregulation by symbiont of host innate immunity","type":"exact"},{"name":"inhibition by symbiont of host innate immunity","type":"narrow"},{"name":"negative regulation by symbiont of host innate immune response","type":"exact"},{"name":"negative regulation by symbiont of host innate immunity","type":"exact"},{"name":"negative regulation of host innate immune response","type":"exact"},{"name":"negative regulation of innate immune response in other organism","type":"broad"},{"name":"suppression by symbiont of host innate immune response","type":"exact"},{"name":"suppression of host innate immune response","type":"exact"}],"termid":"GO:0052170"}


id: GO:0009664
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process that results in the assembly and arrangement of constituent parts of the cellulose and pectin-containing cell wall, or in the disassembly of the cellulose and pectin-containing cell wall. This process is carried out at the cellular level. An example of this process is found in Arabidopsis thaliana.","definition_xrefs":["GOC:mtg_sensu","GOC:jid"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell wall organization","termid":"GO:0071555"},{"relation_name":"is_a","term_name":"plant-type cell wall organization or biogenesis","termid":"GO:0071669"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0071554"}],"interesting_parent_ids":["GO:0008150","GO:0071554"],"is_obsolete":false,"name":"plant-type cell wall organization","synonyms":[{"name":"cell wall organization and biogenesis","type":"narrow"},{"name":"cellulose and pectin-containing cell wall organization and biogenesis","type":"related"},{"name":"plant-type cell wall organisation","type":"exact"},{"name":"plant-type cell wall organization and biogenesis","type":"related"}],"termid":"GO:0009664"}


id: PBO:0074645
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nucleolar RNA, H/ACA box 36B","termid":"PBO:0074645"}


id: GO:0098764
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A meiotic cell cycle phase prior to a during which some part of meiosis I nuclear division or the proceeding cytokinesis occurs.","definition_xrefs":["GOC:dos"],"direct_ancestors":[{"relation_name":"is_a","term_name":"meiotic cell cycle phase","termid":"GO:0098762"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"meiosis I cell cycle phase","termid":"GO:0098764"}


id: GO:0047452
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: protoaphin aglucone = H2O + xanthoaphin.","definition_xrefs":["EC:4.2.1.73","RHEA:23876"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hydro-lyase activity","termid":"GO:0016836"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016829"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016829"],"is_obsolete":false,"name":"protoaphin-aglucone dehydratase (cyclizing) activity","secondary_identifiers":["MetaCyc:4.2.1.73-RXN","KEGG_REACTION:R03742"],"synonyms":[{"name":"protoaphin dehydratase (cyclizing)","type":"related"},{"name":"protoaphin dehydratase activity","type":"related"},{"name":"protoaphin-aglucone hydro-lyase (cyclizing)","type":"related"},{"name":"protoaphin-aglucone hydro-lyase (cyclizing; xanthoaphin-forming)","type":"related"}],"termid":"GO:0047452"}


id: GO:0000211
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Covalent addition of polyubiquitin to another protein, targeting the tagged protein for destruction.","definition_xrefs":["ISBN:0815316194","GOC:cl"],"gene_count":0,"genotype_count":0,"name":"obsolete protein degradation tagging activity (obsolete GO:0000211)","synonyms":[{"name":"protein degradation tagging activity","type":"exact"}],"termid":"GO:0000211"}


id: PBO:0061474
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"neuronal cell adhesion molecule","termid":"PBO:0061474"}


id: PBO:0054258
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1643","termid":"PBO:0054258"}


id: PBO:0048722
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glutaminase 2","termid":"PBO:0048722"}


id: PBO:0062385
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 7 subfamily E member 4 pseudogene","termid":"PBO:0062385"}


id: GO:1901256
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of macrophage colony-stimulating factor production.","definition_xrefs":["GOC:TermGenie","GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of cytokine production","termid":"GO:0001817"},{"relation_name":"regulates","term_name":"macrophage colony-stimulating factor production","termid":"GO:0036301"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0010467","GO:0008150"],"is_obsolete":false,"name":"regulation of macrophage colony-stimulating factor production","synonyms":[{"name":"regulation of M-CSF production","type":"exact"}],"termid":"GO:1901256"}


id: PBO:0002040
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"60S ribosomal protein L5 (predicted)","termid":"PBO:0002040"}


id: PBO:0079852
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"unc-93 homolog B1, TLR signaling regulator","termid":"PBO:0079852"}


id: PBO:0108776
data:
  {"annotation_feature_type":"gene","cv_name":"name_description","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"named from budding yeast ortholog","termid":"PBO:0108776"}


id: PBO:0043385
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"calaxin","termid":"PBO:0043385"}


id: GO:0080052
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a histidine stimulus.","definition_xrefs":["PMID:15889294"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to organonitrogen compound","termid":"GO:0010243"},{"relation_name":"is_a","term_name":"response to organic cyclic compound","termid":"GO:0014070"},{"relation_name":"is_a","term_name":"response to amino acid","termid":"GO:0043200"},{"relation_name":"is_a","term_name":"response to oxygen-containing compound","termid":"GO:1901700"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"response to histidine","termid":"GO:0080052"}


id: FYPO:0000293
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype that affects any DNA metabolic process.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nucleic acid metabolism phenotype","termid":"FYPO:0000292"}],"gene_count":0,"genotype_count":0,"in_subsets":["fypo_slim"],"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0000002"],"is_obsolete":false,"name":"DNA metabolism phenotype","synonyms":[{"name":"fission yeast DNA metabolism phenotype","type":"exact"}],"termid":"FYPO:0000293"}


id: PBO:0065746
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pyrroline-5-carboxylate reductase 1","termid":"PBO:0065746"}


id: FYPO:0003719
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A phenotype in which vegetative cell population growth is normal (i.e. indistinguishable from wild type) in a medium containing tributyltin.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal vegetative cell population growth","termid":"FYPO:0001357"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000003"},{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0000139"},{"rel_name":"is_a","termid":"FYPO:0002058"},{"rel_name":"is_a","termid":"FYPO:0002057"},{"rel_name":"is_a","termid":"FYPO:0002060"}],"interesting_parent_ids":["FYPO:0000139","FYPO:0000003","FYPO:0002058","FYPO:0000257","FYPO:0002057","FYPO:0002060"],"is_obsolete":false,"name":"normal growth on tributyltin","synonyms":[{"name":"normal cell population growth in presence of tributyltin","type":"exact"},{"name":"normal cell population growth on tributylstannane","type":"exact"},{"name":"normal cell population growth on tributyltin","type":"exact"},{"name":"normal cellular response to tributyltin","type":"related"},{"name":"normal vegetative cell population growth on tributyltin","type":"exact"}],"termid":"FYPO:0003719"}


id: PBO:0045312
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"aspartyl aminopeptidase","termid":"PBO:0045312"}


id: PBO:0014271
data:
  {"annotation_feature_type":"gene","cv_name":"complementation","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"functionally complements S. cerevisiae IDI1","termid":"PBO:0014271"}


id: PBO:0044838
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"defensin beta 126","termid":"PBO:0044838"}


id: GO:0070275
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The metabolic process in which ammonia (NH3) is oxidized to nitrite (NO2) in the presence of oxygen. Hydroxylamine is produced enzymatically, and, in the presence of pyruvate, forms pyruvic oxime in a spontaneous, non-enzymatic reaction; pyruvic oxime is then converted to nitrite.","definition_xrefs":["MetaCyc:PWY-2242"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ammonia oxidation","termid":"GO:0019329"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0044281","GO:0008150"],"is_obsolete":false,"name":"aerobic ammonia oxidation to nitrite via pyruvic oxime","termid":"GO:0070275"}


id: PBO:0027013
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_regulation_of_molecular_function","termid":"PBO:0027013"}


id: MOD:01612
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-tyrosine residue to 3'-iodo-L-tyrosine.","definition_xrefs":["PubMed:8995307","RESID:AA0509","ChEBI:27847"],"direct_ancestors":[{"relation_name":"is_a","term_name":"monoiodinated tyrosine","termid":"MOD:01228"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"3'-iodo-L-tyrosine","synonyms":[{"name":"(2S)-2-amino-3-(4-hydroxy-3-iodophenyl)propanoic acid","type":"exact"},{"name":"3'-iodo-L-tyrosine","type":"exact"},{"name":"3-iodo-L-tyrosine","type":"exact"},{"name":"3-iodotyrosine","type":"exact"},{"name":"4-hydroxy-3-iodo-phenylalanine","type":"exact"},{"name":"MIT","type":"exact"},{"name":"MOD_RES Iodotyrosine","type":"exact"}],"termid":"MOD:01612"}


id: PBO:0087740
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Subunit of the Ssh1 translocon complex; Sec61p homolog involved in co-translational pathway of protein translocation; not essential","termid":"PBO:0087740"}


id: MOD:00961
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively reduces the disulfide bond of cystine to form two cysteine residues.","definition_xrefs":["DeltaMass:333"],"direct_ancestors":[{"relation_name":"derives_from","term_name":"L-cystine (cross-link)","termid":"MOD:00034"},{"relation_name":"is_a","term_name":"modified L-cysteine residue","termid":"MOD:00905"},{"relation_name":"is_a","term_name":"hydrogenated residue","termid":"MOD:01473"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"reduction of disulfide crosslink in cystine to two cysteines","termid":"MOD:00961"}


id: GO:0044101
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: (3R)-citramalyl-CoA = pyruvate + acetyl-CoA.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxo-acid-lyase activity","termid":"GO:0016833"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016829"}],"interesting_parent_ids":["GO:0003674","GO:0016829","GO:0003824"],"is_obsolete":false,"name":"(3R)-citramalyl-CoA lyase activity","secondary_identifiers":["RHEA:38275","EC:4.1.3.46","MetaCyc:RXN-13231"],"synonyms":[{"name":"Ccl","type":"related"},{"name":"R-citramalyl-CoA lyase activity","type":"exact"}],"termid":"GO:0044101"}


id: GO:0038059
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A homodimeric protein complex containing two IkappaB kinase (IKK) alpha subunits.","definition_xrefs":["PMID:18626576","PMID:21173796","GOC:bf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein-containing complex","termid":"GO:0032991"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0032991","GO:0005575"],"is_obsolete":false,"name":"IKKalpha-IKKalpha complex","synonyms":[{"name":"IKKalpha homodimer","type":"exact"},{"name":"IKKalpha homodimeric complex","type":"exact"},{"name":"IKKalpha-IKKalpha protein complex","type":"exact"},{"name":"IkappaB kinase alpha homodimer","type":"exact"},{"name":"IkappaB kinase-alpha homodimer","type":"exact"}],"termid":"GO:0038059"}


id: PATO:0002402
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"Multiple lesions some interconnecting with each other.","definition_xrefs":["PATOC:MPATH"],"direct_ancestors":[{"relation_name":"is_a","term_name":"multi-localised","termid":"PATO:0001791"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"multifocal to coalescing","termid":"PATO:0002402"}


id: PBO:0041600
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"carbonic anhydrase 11","termid":"PBO:0041600"}


id: PBO:0043829
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CPSF1 pseudogene 2","termid":"PBO:0043829"}


id: GO:0014864
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The series of events in which a muscle activity stimulus is received by a cell and converted into a molecular signal.","definition_xrefs":["GOC:mtg_muscle"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to muscle activity","termid":"GO:0014850"},{"relation_name":"is_a","term_name":"detection of activity","termid":"GO:0014865"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"detection of muscle activity","termid":"GO:0014864"}


id: PBO:0071630
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L36a pseudogene 49","termid":"PBO:0071630"}


id: GO:0039637
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The breakdown of host DNA, deoxyribonucleic acid, by a virus.","definition_xrefs":["GOC:bm","GOC:jl","GOC:bf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"modulation by virus of host process","termid":"GO:0019048"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"catabolism by virus of host DNA","termid":"GO:0039637"}


id: GO:0045792
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that reduces cell size.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of cell size","termid":"GO:0008361"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of cell size","synonyms":[{"name":"down regulation of cell size","type":"exact"},{"name":"down-regulation of cell size","type":"exact"},{"name":"downregulation of cell size","type":"exact"},{"name":"inhibition of cell size","type":"narrow"}],"termid":"GO:0045792"}


id: PBO:0000611
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SMN family protein Smn1","termid":"PBO:0000611"}


id: GO:0048483
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of the autonomic nervous system over time, from its formation to the mature structure. The autonomic nervous system is composed of neurons that are not under conscious control, and is comprised of two antagonistic components, the sympathetic and parasympathetic nervous systems. The autonomic nervous system regulates key functions including the activity of the cardiac (heart) muscle, smooth muscles (e.g. of the gut), and glands.","definition_xrefs":["GOC:sr","FMA:9905","GOC:jid"],"direct_ancestors":[{"relation_name":"is_a","term_name":"system development","termid":"GO:0048731"},{"relation_name":"part_of","term_name":"nervous system development","termid":"GO:0007399"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"autonomic nervous system development","termid":"GO:0048483"}


id: PBO:0084216
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Homo-isocitrate dehydrogenase; an NAD-linked mitochondrial enzyme required for the fourth step in the biosynthesis of lysine, in which homo-isocitrate is oxidatively decarboxylated to alpha-ketoadipate","termid":"PBO:0084216"}


id: GO:0072553
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a terminal button. A terminal button is the terminal inflated portion of the axon, containing the specialized apparatus necessary to release neurotransmitters.","definition_xrefs":["GOC:mah","GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"presynapse organization","termid":"GO:0099172"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"terminal button organization","synonyms":[{"name":"bouton organization","type":"exact"},{"name":"presynaptic bouton organization","type":"exact"},{"name":"synaptic bouton organization","type":"exact"},{"name":"terminal bouton organization","type":"exact"},{"name":"terminal button organisation","type":"exact"}],"termid":"GO:0072553"}


id: PBO:0000670
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Der1-like (degradation in the ER) family (predicted)","termid":"PBO:0000670"}


id: PBO:0045575
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dual specificity phosphatase 28","termid":"PBO:0045575"}


id: PBO:0048315
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glyceraldehyde 3 phosphate dehydrogenase pseudogene 26","termid":"PBO:0048315"}


id: PBO:0084285
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Integral membrane protein required for V-ATPase function; not an actual component of the vacuolar H+-ATPase (V-ATPase) complex; diverged ortholog of human XMEA (X-linked Myopathy with Excessive Autophagy); functions in the assembly of the V-ATPase; localized to the yeast endoplasmic reticulum (ER)","termid":"PBO:0084285"}


id: GO:0008873
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: D-gluconate + NADP+ = 2-dehydro-D-gluconate + NADPH + H+.","definition_xrefs":["EC:1.1.1.215"],"direct_ancestors":[{"relation_name":"is_a","term_name":"gluconate dehydrogenase activity","termid":"GO:0008875"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003824","GO:0016491","GO:0003674"],"is_obsolete":false,"name":"gluconate 2-dehydrogenase activity","secondary_identifiers":["MetaCyc:1.1.1.215-RXN","RHEA:16653"],"synonyms":[{"name":"2-keto-D-gluconate reductase activity","type":"related"},{"name":"2-ketogluconate reductase activity","type":"related"}],"termid":"GO:0008873"}


id: GO:0031877
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a somatostatin receptor.","definition_xrefs":["GOC:nln","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"neuropeptide receptor binding","termid":"GO:0071855"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005515"},{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0005488","GO:0005515","GO:0003674"],"is_obsolete":false,"name":"somatostatin receptor binding","synonyms":[{"name":"somatostatin receptor ligand","type":"narrow"}],"termid":"GO:0031877"}


id: PBO:0047589
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"fibrinogen gamma chain","termid":"PBO:0047589"}


id: GO:1904092
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of autophagic cell death.","definition_xrefs":["GOC:TermGenie","GO_REF:0000058","PMID:25736836","GOC:bhm"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of programmed cell death","termid":"GO:0043067"},{"relation_name":"regulates","term_name":"autophagic cell death","termid":"GO:0048102"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of autophagic cell death","synonyms":[{"name":"regulation of autophagic death","type":"broad"},{"name":"regulation of programmed cell death by autophagy","type":"broad"},{"name":"regulation of programmed cell death by macroautophagy","type":"exact"},{"name":"regulation of type II programmed cell death","type":"related"}],"termid":"GO:1904092"}


id: GO:0047806
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 2 H2 + ferricytochrome c3 = 4 H+ + ferrocytochrome c3.","definition_xrefs":["EC:1.12.2.1","MetaCyc:CYTOCHROME-C3-HYDROGENASE-RXN"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on hydrogen as donor, cytochrome as acceptor","termid":"GO:0016697"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016491"],"is_obsolete":false,"name":"cytochrome-c3 hydrogenase activity","secondary_identifiers":["RHEA:20625","UM-BBD_enzymeID:e0481"],"synonyms":[{"name":"H(2):ferricytochrome c3 oxidoreductase activity","type":"related"},{"name":"H2:ferricytochrome c3 oxidoreductase activity","type":"related"},{"name":"cytochrome c3 reductase activity","type":"related"},{"name":"cytochrome hydrogenase activity","type":"broad"},{"name":"hydrogen:ferricytochrome-c3 oxidoreductase activity","type":"related"}],"termid":"GO:0047806"}


id: GO:0046623
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the movement of a sphingolipid from the cytosolic to the exoplasmic leaftlet of a membrane, using energy from the hydrolysis of ATP.","definition_xrefs":["PMID:12034738","GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"sphingolipid transporter activity","termid":"GO:0046624"},{"relation_name":"is_a","term_name":"floppase activity","termid":"GO:0140328"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0140303"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0005215","GO:0140303","GO:0003674"],"is_obsolete":false,"name":"sphingolipid floppase activity","synonyms":[{"name":"sphingolipid flippase activity","type":"exact"},{"name":"sphingolipid floppase activity (cytosolic to exoplasmic leaftlet)","type":"exact"},{"name":"sphingolipid-translocating ATPase activity","type":"related"}],"termid":"GO:0046623"}


id: PBO:0002260
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"40S ribosomal protein S15 (predicted)","termid":"PBO:0002260"}


id: PATO:0001242
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A physical quality which is equal to the distance between repeating units of a wave pattern.","definition_xrefs":["PATOC:GVG"],"direct_ancestors":[{"relation_name":"is_a","term_name":"physical quality","termid":"PATO:0001018"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"wavelength","termid":"PATO:0001242"}


id: GO:0005135
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to an interleukin-3 receptor.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cytokine receptor binding","termid":"GO:0005126"},{"relation_name":"is_a","term_name":"growth factor receptor binding","termid":"GO:0070851"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005515"},{"rel_name":"is_a","termid":"GO:0005488"}],"interesting_parent_ids":["GO:0005488","GO:0003674","GO:0005515"],"is_obsolete":false,"name":"interleukin-3 receptor binding","synonyms":[{"name":"IL-3","type":"narrow"},{"name":"interleukin-3 receptor ligand","type":"narrow"}],"termid":"GO:0005135"}


id: PBO:0074104
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"solute carrier family 28 member 1","termid":"PBO:0074104"}


id: GO:0045780
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of bone resorption.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of bone resorption","termid":"GO:0045124"},{"relation_name":"is_a","term_name":"positive regulation of multicellular organismal process","termid":"GO:0051240"},{"relation_name":"positively_regulates","term_name":"bone resorption","termid":"GO:0045453"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of bone resorption","synonyms":[{"name":"activation of bone resorption","type":"narrow"},{"name":"stimulation of bone resorption","type":"narrow"},{"name":"up regulation of bone resorption","type":"exact"},{"name":"up-regulation of bone resorption","type":"exact"},{"name":"upregulation of bone resorption","type":"exact"}],"termid":"GO:0045780"}


id: PBO:0031110
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_regulation_of_translation_in_response_to_stress","termid":"PBO:0031110"}


id: PBO:0041008
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"BORCS8-MEF2B readthrough","termid":"PBO:0041008"}


id: PBO:0041537
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chromosome 17 open reading frame 75","termid":"PBO:0041537"}


id: FYPO:0005061
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the phosphorylation of the serine residue at position 5 within one or more copies of the heptapeptide repeat (YSPTSPS) of the C-terminal domain of RNA polymerase II normal (i.e. indistinguishable from wild type).","definition_xrefs":["PomBase:mah","GO:0071620","PMID:17502918"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal protein phosphorylation during vegetative growth","termid":"FYPO:0000776"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001312"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0001312","FYPO:0000257","FYPO:0001320","FYPO:0000002"],"is_obsolete":false,"name":"normal phosphorylation of RNA polymerase II C-terminal domain serine 5 residues during vegetative growth","synonyms":[{"name":"normal phosphorylation of RNA polymerase II C-terminal domain serine 5 residues during mitotic cell cycle","type":"related"},{"name":"normal phosphorylation of RNA polymerase II CTD serine 5 residues during vegetative growth","type":"exact"}],"termid":"FYPO:0005061"}


id: PBO:0082253
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Alpha subunit of translation initiation factor eIF2B; guanine-nucleotide exchange factor for eIF2; activity regulated by phosphorylated eIF2; positive regulator of GCN4 expression; mutations in human ortholog EIF2B2 cause fatal brain disease childhood ataxia with central nervous system hypomyelination (CACH); human ortholog EIF2B1 can complement yeast null mutant","termid":"PBO:0082253"}


id: PBO:0067179
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 237, pseudogene","termid":"PBO:0067179"}


id: PBO:0051501
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Indian hedgehog signaling molecule","termid":"PBO:0051501"}


id: PBO:0064304
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PLLP pseudogene 1","termid":"PBO:0064304"}


id: PBO:0052681
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"keratin 8 pseudogene 49","termid":"PBO:0052681"}


id: PBO:0087287
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Signal transducing MEK kinase; involved in pheromone response and pseudohyphal/invasive growth pathways where it phosphorylates Ste7p, and the high osmolarity response pathway, via phosphorylation of Pbs2p; regulated by Ste20p and Ste50p; protein abundance increases in response to DNA replication stress","termid":"PBO:0087287"}


id: PBO:0059263
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial ribosomal protein L30","termid":"PBO:0059263"}


id: PBO:0051684
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"INTS3 and NABP interacting protein","termid":"PBO:0051684"}


id: GO:0005030
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Combining with a neurotrophin, any of a family of growth factors that prevent apoptosis in neurons and promote nerve growth, and transmitting the signal to initiate a change in cell activity.","definition_xrefs":["GOC:signaling","GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"signaling receptor activity","termid":"GO:0038023"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0038023"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0038023"],"is_obsolete":false,"name":"neurotrophin receptor activity","termid":"GO:0005030"}


id: PBO:0064486
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DNA polymerase nu","termid":"PBO:0064486"}


id: GO:0060373
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the establishment or extent of a membrane potential in the depolarizing direction away from the resting potential in a ventricular cardiomyocyte.","definition_xrefs":["GOC:dph","GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of membrane depolarization","termid":"GO:0003254"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of ventricular cardiac muscle cell membrane depolarization","synonyms":[{"name":"electrocardiogram QRS complex","type":"related"},{"name":"regulation of ventricular cardiomyocyte membrane depolarization","type":"exact"},{"name":"ventricular depolarization","type":"related"}],"termid":"GO:0060373"}


id: GO:0016201
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which a neuronal cell in a multicellular organism recognizes chemorepellent signals that inhibit its growth toward the source.","definition_xrefs":["GOC:mah","ISBN:0878932437"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative chemotaxis","termid":"GO:0050919"},{"relation_name":"part_of","term_name":"synaptic target recognition","termid":"GO:0008039"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"synaptic target inhibition","termid":"GO:0016201"}


id: PBO:0090463
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"exosome 3'-5' exoribonuclease subunit Dis3","termid":"PBO:0090463"}


id: PBO:0083247
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Dubious open reading frame; unlikely to encode a functional protein, based on available experimental and comparative sequence data; identified based on homology to hemiascomycetous yeasts","termid":"PBO:0083247"}


id: MOD:01261
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"modification from Unimod Chemical derivative -","definition_xrefs":["PubMed:15549660","Unimod:270#C"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nucleophilic addtion to cytopiloyne","termid":"MOD:00590"},{"relation_name":"is_a","term_name":"modified L-serine residue","termid":"MOD:00916"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nucleophilic addtion to cytopiloyne - site S","synonyms":[{"name":"Cytopiloyne","type":"related"},{"name":"nucleophilic addtion to cytopiloyne","type":"related"}],"termid":"MOD:01261"}


id: GO:1905350
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The aggregation, arrangement and bonding together of a set of components to form a Y-shaped link. Two distinct protein complexes are known to be involved in proper linker assembly: the MKS complex and the NPHP complex. Improper assembly of Y-shaped links may cause malfunctioning of the transition zone as a molecular gate.","definition_xrefs":["PMID:4554367","GO_REF:0000079","PMID:26595381","GOC:TermGenie","PMID:23728985","PMID:24664739","GOC:cilia"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein-containing complex assembly","termid":"GO:0065003"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0044085"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0065003"}],"interesting_parent_ids":["GO:0065003","GO:0044085","GO:0008150"],"is_obsolete":false,"name":"Y-shaped link assembly","synonyms":[{"name":"Y-link assembly","type":"related"},{"name":"Y-link formation","type":"related"},{"name":"Y-link structure assembly","type":"related"},{"name":"Y-link structure formation","type":"related"},{"name":"Y-shaped assemblage assembly","type":"related"},{"name":"Y-shaped assemblage formation","type":"related"},{"name":"Y-shaped fiber assembly","type":"related"},{"name":"Y-shaped fiber formation","type":"related"},{"name":"Y-shaped fibre assembly","type":"related"},{"name":"Y-shaped fibre formation","type":"related"},{"name":"Y-shaped link formation","type":"exact"},{"name":"Y-shaped linker assembly","type":"related"},{"name":"Y-shaped linker formation","type":"related"},{"name":"membrane-microtubule complex assembly","type":"related"},{"name":"membrane-microtubule complex formation","type":"related"}],"termid":"GO:1905350"}


id: PBO:0055837
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"leucine rich alpha-2-glycoprotein 1","termid":"PBO:0055837"}


id: PBO:0001060
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glutamate-ammonia ligase Gln1","termid":"PBO:0001060"}


id: FYECO:0000176
data:
  {"annotation_feature_type":"gene","cv_name":"fission_yeast_phenotype_condition","definition":"An experimental condition in which ethylenediaminetetraacetic acid (EDTA) was added to the medium or assay buffer in excess compared to standard medium or assay buffers.","definition_xrefs":["PomBase:al"],"direct_ancestors":[{"relation_name":"is_a","term_name":"grouping excess","termid":"FYECO:0000109"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"+ EDTA","synonyms":[{"name":"EDTA added","type":"exact"},{"name":"ethylenediaminetetraacetic acid added","type":"exact"}],"termid":"FYECO:0000176"}


id: GO:0045463
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of the R8 photoreceptor over time, from its formation to the mature structure. The R8 photoreceptor is the founding receptor of each ommatidium.","definition_xrefs":["PMID:11880339"],"direct_ancestors":[{"relation_name":"is_a","term_name":"compound eye photoreceptor development","termid":"GO:0042051"},{"relation_name":"part_of","term_name":"R8 cell differentiation","termid":"GO:0045465"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"R8 cell development","termid":"GO:0045463"}


id: PBO:0001499
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"proteasome regulatory particle, gankyrin (predicted)","termid":"PBO:0001499"}


id: PBO:0071100
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L21 pseudogene 102","termid":"PBO:0071100"}


id: PBO:0091755
data:
  {"annotation_feature_type":"gene","cv_name":"complementation","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"functionally complemented by human ELL","termid":"PBO:0091755"}


id: PBO:0068517
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U1 small nuclear 109, pseudogene","termid":"PBO:0068517"}


id: GO:0006364
data:
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id: PBO:0066270
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id: GO:0021597
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id: GO:0005304
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id: GO:0004486
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id: PBO:0066635
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id: PBO:0091185
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id: PBO:0075590
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id: PBO:0057955
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id: PBO:0004883
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id: GO:0016998
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id: PBO:0056574
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id: FYPO:0004096
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id: GO:0051835
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates, maintains or increases the frequency, rate or extent of synaptic structural plasticity.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of cellular component organization","termid":"GO:0051130"},{"relation_name":"is_a","term_name":"regulation of synapse structural plasticity","termid":"GO:0051823"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of synapse structural plasticity","synonyms":[{"name":"activation of synapse structural plasticity","type":"narrow"},{"name":"stimulation of synapse structural plasticity","type":"narrow"},{"name":"up regulation of synapse structural plasticity","type":"exact"},{"name":"up-regulation of synapse structural plasticity","type":"exact"},{"name":"upregulation of synapse structural plasticity","type":"exact"}],"termid":"GO:0051835"}


id: GO:0102588
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: cyanidin 3-O-beta-D-glucoside betaine + malonyl-CoA = cyanidin 3-O-(6-O-malonyl-beta-D-glucoside) + coenzyme A.","definition_xrefs":["GOC:pz","EC:2.3.1.171"],"direct_ancestors":[{"relation_name":"is_a","term_name":"acyltransferase activity, transferring groups other than amino-acyl groups","termid":"GO:0016747"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016746"}],"interesting_parent_ids":["GO:0016740","GO:0003674","GO:0003824","GO:0016746"],"is_obsolete":false,"name":"cyanidin 3-O-glucoside 6''-O-malonyltransferase activity","secondary_identifiers":["MetaCyc:RXN-15335"],"termid":"GO:0102588"}


id: PBO:0064716
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"peptidylprolyl isomerase A pseudogene 52","termid":"PBO:0064716"}


id: GO:0002758
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The series of molecular signals generated by a ligand binding to its receptor that lead to the activation or perpetuation of an innate immune response.","definition_xrefs":["PMID:28105028","GOC:jy","GOC:mah","PMID:11418339"],"direct_ancestors":[{"relation_name":"is_a","term_name":"activation of innate immune response","termid":"GO:0002218"},{"relation_name":"is_a","term_name":"immune response-activating signaling pathway","termid":"GO:0002757"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"innate immune response-activating signaling pathway","secondary_identifiers":["GO:0010204","GO:0009870"],"synonyms":[{"name":"defence response signaling pathway, resistance gene-dependent","type":"related"},{"name":"defence response signaling pathway, resistance gene-independent","type":"related"},{"name":"defence response signalling pathway, resistance gene-dependent","type":"related"},{"name":"defence response signalling pathway, resistance gene-independent","type":"related"},{"name":"defense response signaling pathway, resistance gene-dependent","type":"related"},{"name":"defense response signaling pathway, resistance gene-independent","type":"related"},{"name":"defense response signalling pathway, resistance gene-dependent","type":"related"},{"name":"effector triggered immunity","type":"broad"},{"name":"effector-triggered immune signaling","type":"related"},{"name":"effector-triggered immunity","type":"broad"}],"termid":"GO:0002758"}


id: PBO:0048976
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"GPAT4 and GINS4 antisense RNA 1","termid":"PBO:0048976"}


id: PBO:0036548
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosome biogenesis protein Bmt5 (predicted)","termid":"PBO:0036548"}


id: FYPO:0002514
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which the palmitoylation of one or more specific proteins is abnormal during one or both meiotic nuclear divisions.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal protein palmitoylation","termid":"FYPO:0002503"},{"relation_name":"is_a","term_name":"abnormal protein modification during meiotic cell cycle","termid":"FYPO:0006459"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0002274"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0002494"}],"interesting_parent_ids":["FYPO:0002274","FYPO:0002494","FYPO:0001985","FYPO:0000002","FYPO:0005447"],"is_obsolete":false,"name":"abnormal protein palmitoylation during meiosis","synonyms":[{"name":"abnormal protein palmitoylation during meiotic nuclear division","type":"exact"}],"termid":"FYPO:0002514"}


id: PBO:0061349
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nucleophosmin 1 pseudogene 7","termid":"PBO:0061349"}


id: FYPO:0004369
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of phytochelatin measured in the vacuole is lower than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased level of substance in vacuole","termid":"FYPO:0001602"},{"relation_name":"is_a","term_name":"decreased cellular phytochelatin level","termid":"FYPO:0002829"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001320","FYPO:0001985"],"is_obsolete":false,"name":"decreased vacuolar phytochelatin level","synonyms":[{"name":"decreased level of phytochelatin in vacuole","type":"exact"},{"name":"decreased vacuolar phytochelatin level during mitotic cell cycle","type":"related"},{"name":"decreased vacuolar phytochelatin level during vegetative growth","type":"exact"},{"name":"reduced level of phytochelatin in vacuole","type":"exact"},{"name":"reduced vacuolar phytochelatin level","type":"exact"}],"termid":"FYPO:0004369"}


id: PATO:0000036
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0000036 water content (obsolete PATO:0000036)","termid":"PATO:0000036"}


id: GO:0039679
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A crystalline protein matrix surrounding the nucleocapsids of some insect viruses after their release in the environment. Produced in the host cell, the occlusion body protects the infectious virion after death of the host.","definition_xrefs":["VZ:1949","UniProtKB-KW:KW-0842"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pathogen-containing vacuole","termid":"GO:0140220"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"viral occlusion body","termid":"GO:0039679"}


id: GO:0103082
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 2-oxo-6-methylthiohexanoate + acetyl-CoA + H2O = H+ + 2-(4'-methylthio)butylmalate + coenzyme A.","definition_xrefs":["EC:2.3.3.-","GOC:pz"],"direct_ancestors":[{"relation_name":"is_a","term_name":"acyltransferase activity, acyl groups converted into alkyl on transfer","termid":"GO:0046912"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0016746"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003824","GO:0016746","GO:0016740","GO:0003674"],"is_obsolete":false,"name":"2-(4'-methylthio)butylmalate synthase activity","secondary_identifiers":["MetaCyc:RXNQT-4166"],"termid":"GO:0103082"}


id: PATO:0001656
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A osmolarity which is relatively low.","definition_xrefs":["PATOC:GVG"],"direct_ancestors":[{"relation_name":"decreased_in_magnitude_relative_to","term_name":"normal","termid":"PATO:0000461"},{"relation_name":"is_a","term_name":"osmolarity","termid":"PATO:0001655"},{"relation_name":"is_a","term_name":"decreased object quality","termid":"PATO:0002303"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"decreased osmolarity","synonyms":[{"name":"low osmolarity","type":"exact"}],"termid":"PATO:0001656"}


id: GO:0016648
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of an oxidation-reduction (redox) reaction in which a CH-NH group acts as a hydrogen or electron donor and reduces disulfide.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the CH-NH group of donors","termid":"GO:0016645"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003824","GO:0016491","GO:0003674"],"is_obsolete":false,"name":"oxidoreductase activity, acting on the CH-NH group of donors, disulfide as acceptor","secondary_identifiers":["EC:1.5.4.-"],"synonyms":[{"name":"oxidoreductase activity, acting on the CH-NH group of donors, disulphide as acceptor","type":"exact"}],"termid":"GO:0016648"}


id: FYPO:0001908
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of any unspliced or incompletely spliced mRNA precursor measured in a cell is higher than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased RNA level during vegetative growth","termid":"FYPO:0000825"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"output_of","termid":"FYPO:0006551"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0000002","FYPO:0001985","FYPO:0006551","FYPO:0005447"],"is_obsolete":false,"name":"increased pre-mRNA level","synonyms":[{"name":"accumulation of pre-mRNA transcripts","type":"related"},{"name":"increased pre-mRNA accumulation","type":"related"},{"name":"increased pre-mRNA level during mitotic cell cycle","type":"related"},{"name":"increased pre-mRNA level during vegetative growth","type":"exact"},{"name":"increased pre-mRNA transcript level","type":"exact"}],"termid":"FYPO:0001908"}


id: GO:1902038
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of hematopoietic stem cell differentiation.","definition_xrefs":["PMID:23403623","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of hematopoietic progenitor cell differentiation","termid":"GO:1901534"},{"relation_name":"is_a","term_name":"regulation of hematopoietic stem cell differentiation","termid":"GO:1902036"},{"relation_name":"is_a","term_name":"positive regulation of stem cell differentiation","termid":"GO:2000738"},{"relation_name":"positively_regulates","term_name":"hematopoietic stem cell differentiation","termid":"GO:0060218"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of hematopoietic stem cell differentiation","synonyms":[{"name":"activation of haematopoietic stem cell differentiation","type":"narrow"},{"name":"activation of haemopoietic stem cell differentiation","type":"narrow"},{"name":"activation of hematopoietic stem cell differentiation","type":"narrow"},{"name":"activation of hemopoietic stem cell differentiation","type":"narrow"},{"name":"positive regulation of haematopoietic stem cell differentiation","type":"exact"},{"name":"positive regulation of haemopoietic stem cell differentiation","type":"exact"},{"name":"positive regulation of hemopoietic stem cell differentiation","type":"exact"},{"name":"up regulation of haematopoietic stem cell differentiation","type":"exact"},{"name":"up regulation of haemopoietic stem cell differentiation","type":"exact"},{"name":"up regulation of hematopoietic stem cell differentiation","type":"exact"},{"name":"up regulation of hemopoietic stem cell differentiation","type":"exact"},{"name":"up-regulation of haematopoietic stem cell differentiation","type":"exact"},{"name":"up-regulation of haemopoietic stem cell differentiation","type":"exact"},{"name":"up-regulation of hematopoietic stem cell differentiation","type":"exact"},{"name":"up-regulation of hemopoietic stem cell differentiation","type":"exact"},{"name":"upregulation of haematopoietic stem cell differentiation","type":"exact"},{"name":"upregulation of haemopoietic stem cell differentiation","type":"exact"},{"name":"upregulation of hematopoietic stem cell differentiation","type":"exact"},{"name":"upregulation of hemopoietic stem cell differentiation","type":"exact"}],"termid":"GO:1902038"}


id: PBO:0042028
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"coiled-coil domain containing 85C","termid":"PBO:0042028"}


id: FYPO:0005656
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which iron ion binding by a gene product does not occur. The affected gene product may be encoded by the mutated gene, or by a different gene.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"binding phenotype","termid":"FYPO:0001092"},{"relation_name":"is_a","term_name":"abolished molecular function","termid":"FYPO:0005446"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0000707"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0000652","FYPO:0000707","FYPO:0001985"],"is_obsolete":false,"name":"abolished iron ion binding","synonyms":[{"name":"abolished iron binding","type":"exact"},{"name":"iron ion binding abolished","type":"exact"}],"termid":"FYPO:0005656"}


id: PBO:0052722
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"keratin 18 pseudogene 14","termid":"PBO:0052722"}


id: GO:0008225
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Inhibits the growth of, or directly kills, Gram-negative bacterial cells.","definition_xrefs":["GOC:go_curators"],"gene_count":0,"genotype_count":0,"name":"obsolete Gram-negative antibacterial peptide activity (obsolete GO:0008225)","synonyms":[{"name":"Gram-negative antibacterial peptide activity","type":"exact"}],"termid":"GO:0008225"}


id: GO:0070832
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The phosphatidylcholine biosynthetic process that begins with three consecutive N-methylation steps that are carried out on phospho-bases, phosphoethanolamine, phospho-N-methylethanolamine, and phospho-N-dimethylethanolamine; the process ends with the conversion of a phosphatidyl-N-dimethylethanolamine to a phosphatidylcholine.","definition_xrefs":["MetaCyc:PWY4FS-2"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phosphatidylcholine biosynthetic process","termid":"GO:0006656"},{"relation_name":"is_a","term_name":"primary amino compound metabolic process","termid":"GO:1901160"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006629"}],"interesting_parent_ids":["GO:0008150","GO:0006629"],"is_obsolete":false,"name":"phosphatidylcholine biosynthesis from phosphoryl-ethanolamine via N-dimethylethanolamine phosphate and CDP-choline","termid":"GO:0070832"}


id: PBO:0028950
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-protein_mislocalized_to_eisosome","termid":"PBO:0028950"}


id: GO:0140918
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The core region of the centrosome, a layered structure containing proteins, surrounded by the centrosomal corona. The core duplicates once per cell cycle at the G2/M transition when two outer layers form the mitotic spindle poles.","definition_xrefs":["PMID:30413081","PMID:28104305"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular anatomical entity","termid":"GO:0110165"},{"relation_name":"part_of","term_name":"centrosome","termid":"GO:0005813"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0015630"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0015630","GO:0005575"],"is_obsolete":false,"name":"centrosomal core","synonyms":[{"name":"centrosome core","type":"exact"}],"termid":"GO:0140918"}


id: PBO:0064966
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PRAME family member 19","termid":"PBO:0064966"}


id: PBO:0070971
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L18 pseudogene 9","termid":"PBO:0070971"}


id: PBO:0041997
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"coiled-coil domain containing 43","termid":"PBO:0041997"}


id: PBO:0061921
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 1 subfamily F member 1","termid":"PBO:0061921"}


id: FYPO:0006264
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which mitotic sister chromatid separation is decreased at the telomeric regions during anaphase B. The remainder of the sister chromatids may or may not separate normally.","definition_xrefs":["PomBase:mah","PMID:21540296"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal telomeric DNA separation","termid":"FYPO:0005442"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"FYPO:0000337"},{"rel_name":"part_of","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000337"},{"rel_name":"part_of","termid":"FYPO:0005447"},{"rel_name":"part_of","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0000641"},{"rel_name":"part_of","termid":"FYPO:0000641"},{"rel_name":"part_of","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0000337","FYPO:0000641","FYPO:0000002","FYPO:0001985","FYPO:0001320","FYPO:0000631","FYPO:0005447"],"is_obsolete":false,"name":"decreased telomeric DNA separation during anaphase B","synonyms":[{"name":"decreased DNA separation at telomere during anaphase B","type":"exact"},{"name":"decreased mitotic sister chromatid separation at telomere during anaphase B","type":"exact"},{"name":"decreased mitotic telomeric DNA separation during anaphase B","type":"exact"},{"name":"decreased segregation of telomeric DNA during anaphase B","type":"related"},{"name":"decreased telomere disjunction during anaphase B","type":"exact"},{"name":"decreased telomere separation during anaphase B","type":"exact"},{"name":"decreased telomeric DNA separation during anaphase B during mitotic cell cycle","type":"related"},{"name":"decreased telomeric DNA separation during anaphase B during vegetative growth","type":"exact"},{"name":"decreased telomeric DNA separation during anaphase B of mitosis","type":"exact"},{"name":"increased sister chromatid telomere nondisjunction at anaphase B","type":"exact"},{"name":"increased taz1 foci at anaphase B","type":"related"},{"name":"reduced telomeric DNA separation during anaphase B","type":"related"}],"termid":"FYPO:0006264"}


id: PBO:0068992
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 236, pseudogene","termid":"PBO:0068992"}


id: PBO:0086295
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein with a role in regulating Swe1p-dependent polarized growth; involved in maintaining Cdc55p in the cytoplasm where it promotes mitotic entry; involved in mitotic exit through Cdc14p regulation; interacts with silencing proteins at telomeres; has a role in Bcy1p localization; implicated in mRNA nuclear export; ZDS1 has a paralog, ZDS2, that arose from the whole genome duplication","termid":"PBO:0086295"}


id: PBO:0041432
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chromosome 8 open reading frame 89","termid":"PBO:0041432"}


id: PBO:0000649
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DNA-directed RNA polymerase I and III subunit Rpc19","termid":"PBO:0000649"}


id: PBO:0001027
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Usp (universal stress protein) family protein, implicated in meiotic chromosome segregation","termid":"PBO:0001027"}


id: MOD:00486
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"modification from Unimod Chemical derivative","definition_xrefs":["Unimod:114#C"],"direct_ancestors":[{"relation_name":"is_a","term_name":"reagent derivatized residue","termid":"MOD:00848"},{"relation_name":"is_a","term_name":"modified L-proline residue","termid":"MOD:00915"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"oxidized proline biotinylated with biotin-LC-hydrazide, reduced","synonyms":[{"name":"OxProBiotinRed","type":"related"},{"name":"Oxidized proline biotinylated with biotin-LC-hydrazide, reduced","type":"related"}],"termid":"MOD:00486"}


id: FYPO:0007946
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which the occurrence of ubiquitination of one or more specific proteins, or of specific protein sites, is decreased.","definition_xrefs":["PomBase:val"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal protein ubiquitination","termid":"FYPO:0006977"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0002494"},{"rel_name":"is_a","termid":"FYPO:0002274"}],"interesting_parent_ids":["FYPO:0002274","FYPO:0000002","FYPO:0005447","FYPO:0002494","FYPO:0001985"],"is_obsolete":false,"name":"decreased protein ubiquitination","termid":"FYPO:0007946"}


id: GO:0030164
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Structural change in proteins which destroys the native, active configuration without rupture of peptide bonds.","definition_xrefs":["ISBN:3110145359","GOC:kd"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein catabolic process","termid":"GO:0030163"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0030163"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0030163"],"is_obsolete":false,"name":"protein denaturation","secondary_identifiers":["Wikipedia:Denaturation#Protein_denaturation"],"termid":"GO:0030164"}


id: FYPO:0003905
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A physical cellular phenotype in which the size, shape, or structure of the spindle pole body is normal (i.e. indistinguishable from wild type) during the second meiotic nuclear division.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal subcellular component during vegetative growth","termid":"FYPO:0001313"},{"relation_name":"is_a","term_name":"normal spindle pole body","termid":"FYPO:0005379"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"output_of","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0000257","FYPO:0001320","FYPO:0000002"],"is_obsolete":false,"name":"normal meiotic spindle pole body morphology during meiosis II","synonyms":[{"name":"normal meiotic SPB morphology during meiosis II","type":"exact"},{"name":"normal meiotic spindle pole body structure during meiosis II","type":"narrow"},{"name":"normal spindle pole body morphology during meiosis II","type":"exact"},{"name":"normal spindle pole body morphology during second meiotic nuclear division","type":"exact"}],"termid":"FYPO:0003905"}


id: PBO:0072375
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RPS27A pseudogene 1","termid":"PBO:0072375"}


id: PBO:0064738
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"peptidylprolyl isomerase A pseudogene 74","termid":"PBO:0064738"}


id: GO:1903944
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of hepatocyte apoptotic process.","definition_xrefs":["GO_REF:0000058","GOC:TermGenie","PMID:8649852"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of hepatocyte apoptotic process","termid":"GO:1903943"},{"relation_name":"is_a","term_name":"negative regulation of epithelial cell apoptotic process","termid":"GO:1904036"},{"relation_name":"negatively_regulates","term_name":"hepatocyte apoptotic process","termid":"GO:0097284"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of hepatocyte apoptotic process","synonyms":[{"name":"down regulation of hepatocyte apoptosis","type":"narrow"},{"name":"down regulation of hepatocyte apoptotic process","type":"exact"},{"name":"down-regulation of hepatocyte apoptosis","type":"narrow"},{"name":"down-regulation of hepatocyte apoptotic process","type":"exact"},{"name":"downregulation of hepatocyte apoptosis","type":"narrow"},{"name":"downregulation of hepatocyte apoptotic process","type":"exact"},{"name":"inhibition of hepatocyte apoptosis","type":"narrow"},{"name":"inhibition of hepatocyte apoptotic process","type":"narrow"},{"name":"negative regulation of hepatocyte apoptosis","type":"narrow"}],"termid":"GO:1903944"}


id: GO:0005072
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Activity of any of the molecules that transmit the signal from a TGF-beta receptor through the cytoplasm to the nucleus.","definition_xrefs":["GOC:hjd"],"gene_count":0,"genotype_count":0,"name":"obsolete transforming growth factor beta receptor, cytoplasmic mediator activity (obsolete GO:0005072)","synonyms":[{"name":"TGF-beta receptor, cytoplasmic mediator activity","type":"exact"},{"name":"TGFbeta receptor, cytoplasmic mediator activity","type":"exact"}],"termid":"GO:0005072"}


id: FYPO:0005900
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which actin filament-based movement is abnormal. Actin filament-based movement is the movement of organelles or other particles along actin filaments, or sliding of actin filaments past each other, mediated by motor proteins.","definition_xrefs":["GO:0030048","PMID:19570908","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal actin filament-based process","termid":"FYPO:0006306"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0005447","FYPO:0000002","FYPO:0001320"],"is_obsolete":false,"name":"abnormal actin filament-based movement","synonyms":[{"name":"abnormal actin filament-based movement during mitotic cell cycle","type":"related"},{"name":"abnormal actin filament-based movement during vegetative growth","type":"exact"}],"termid":"FYPO:0005900"}


id: FYPO:0000348
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype characterized by altered spore morphology, i.e. the size, shape, or structure of the spore is abnormal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal cell morphology","termid":"FYPO:0000005"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000005"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0000005","FYPO:0001985"],"is_obsolete":false,"name":"abnormal spore morphology","termid":"FYPO:0000348"}


id: GO:1902910
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of melanosome transport.","definition_xrefs":["GO_REF:0000058","GOC:als","GOC:TermGenie","PMID:23334344"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of cellular process","termid":"GO:0048522"},{"relation_name":"is_a","term_name":"positive regulation of transport","termid":"GO:0051050"},{"relation_name":"is_a","term_name":"regulation of melanosome transport","termid":"GO:1902908"},{"relation_name":"positively_regulates","term_name":"melanosome transport","termid":"GO:0032402"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"positively_regulates","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006810","GO:0008150"],"is_obsolete":false,"name":"positive regulation of melanosome transport","synonyms":[{"name":"activation of melanosome transport","type":"narrow"},{"name":"up regulation of melanosome transport","type":"exact"},{"name":"up-regulation of melanosome transport","type":"exact"},{"name":"upregulation of melanosome transport","type":"exact"}],"termid":"GO:1902910"}


id: GO:0004828
data:
  {"annotated_genes":["SJAG_04762","SJAG_02977"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[90838,91611],"is_not":false,"summary":null,"term":"GO:0004828"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: ATP + L-serine + tRNA(Ser) = AMP + diphosphate + L-seryl-tRNA(Ser).","definition_xrefs":["EC:6.1.1.11"],"direct_ancestors":[{"relation_name":"is_a","term_name":"aminoacyl-tRNA ligase activity","termid":"GO:0004812"}],"gene_count":2,"genes_by_uniquename":{"SJAG_02977":null,"SJAG_04762":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016874"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0140098"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0140101"}],"interesting_parent_ids":["GO:0140098","GO:0016874","GO:0003674","GO:0003824","GO:0140101"],"is_obsolete":false,"name":"serine-tRNA ligase activity","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["RHEA:12292","Reactome:R-HSA-379992","MetaCyc:SERINE--TRNA-LIGASE-RXN","Reactome:R-HSA-380239"],"synonyms":[{"name":"L-serine:tRNASer ligase (AMP-forming)","type":"related"},{"name":"SerRS activity","type":"related"},{"name":"serine translase activity","type":"related"},{"name":"seryl-tRNA synthetase activity","type":"exact"},{"name":"seryl-transfer RNA synthetase activity","type":"related"},{"name":"seryl-transfer ribonucleate synthetase activity","type":"related"},{"name":"seryl-transfer ribonucleic acid synthetase activity","type":"related"}],"termid":"GO:0004828","terms_by_termid":{"GO:0004828":null}}


id: GO:0047955
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: A + glycerol = AH(2) + glycerone.","definition_xrefs":["EC:1.1.99.22","RHEA:17493"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on CH-OH group of donors","termid":"GO:0016614"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016491"],"is_obsolete":false,"name":"glycerol dehydrogenase (acceptor) activity","secondary_identifiers":["KEGG_REACTION:R01045","MetaCyc:GLYCEROL-DEHYDROGENASE-ACCEPTOR-RXN"],"synonyms":[{"name":"glycerol:(acceptor) 1-oxidoreductase activity","type":"related"},{"name":"glycerol:acceptor 1-oxidoreductase activity","type":"related"}],"termid":"GO:0047955"}


id: PBO:0061571
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"neurotrophin 3","termid":"PBO:0061571"}


id: PBO:0043626
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"COP1 divergent transcript","termid":"PBO:0043626"}


id: FYPO:0005113
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which the observed rate of ubiquitin-specific protease activity is increased.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased peptidase activity","termid":"FYPO:0000667"},{"relation_name":"is_a","term_name":"abnormal ubiquitin-specific protease activity","termid":"FYPO:0005111"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000661"},{"rel_name":"is_a","termid":"FYPO:0000707"},{"rel_name":"is_a","termid":"FYPO:0000654"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000652"}],"interesting_parent_ids":["FYPO:0000654","FYPO:0000661","FYPO:0000707","FYPO:0001985","FYPO:0000652"],"is_obsolete":false,"name":"increased ubiquitin-specific protease activity","termid":"FYPO:0005113"}


id: PBO:0073181
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"selenoprotein K pseudogene 3","termid":"PBO:0073181"}


id: PBO:0082007
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger SWIM-type containing 5 pseudogene 3","termid":"PBO:0082007"}


id: PBO:0031638
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_shmoo_formation","termid":"PBO:0031638"}


id: PBO:0049272
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glycogen synthase kinase 3 alpha","termid":"PBO:0049272"}


id: GO:0075265
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates, maintains or increases the frequency, rate or extent of oogonium development, a process that leads to the formation of a female gametangium of oomycetes, containing one or more gametes.","definition_xrefs":["GOC:pamgo_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of spore-bearing organ development","termid":"GO:0075261"},{"relation_name":"is_a","term_name":"regulation of oogonium development","termid":"GO:0075264"},{"relation_name":"positively_regulates","term_name":"oogonium development","termid":"GO:0075263"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of oogonium development","termid":"GO:0075265"}


id: PBO:0070081
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6atac small nuclear 38, pseudogene","termid":"PBO:0070081"}


id: FYPO:0007000
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which histone exchange occurs to a normal (i.e. indistinguishable from wild type) extent at transposable elements. Histone exchange is replacement, within chromatin, of resident histones or histone subunits with alternative, sometimes variant, histones or subunits.","definition_xrefs":["PomBase:mah","GO:0005721","GO:0043486","PMID:26518661"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal dynamic protein localization pattern","termid":"FYPO:0006999"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0001312"},{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0000138","FYPO:0000257","FYPO:0000002","FYPO:0001312"],"is_obsolete":false,"name":"normal histone exchange at transposable element","synonyms":[{"name":"normal histone exchange at transposable element during mitotic cell cycle","type":"related"},{"name":"normal histone exchange at transposable element during vegetative growth","type":"exact"},{"name":"normal histone exchange at transposon","type":"exact"}],"termid":"FYPO:0007000"}


id: GO:0016185
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Evagination of the presynaptic membrane, resulting in the formation of a new synaptic vesicle.","definition_xrefs":["GOC:curators","PMID:10099709","PMID:20448150"],"direct_ancestors":[{"relation_name":"is_a","term_name":"synaptic vesicle budding","termid":"GO:0070142"},{"relation_name":"part_of","term_name":"synaptic vesicle endocytosis","termid":"GO:0048488"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0006810"},{"rel_name":"part_of","termid":"GO:0016192"},{"rel_name":"is_a","termid":"GO:0061024"}],"interesting_parent_ids":["GO:0061024","GO:0006810","GO:0016192","GO:0008150"],"is_obsolete":false,"name":"synaptic vesicle budding from presynaptic endocytic zone membrane","synonyms":[{"name":"synaptic vesicle budding from pre-synaptic membrane","type":"exact"},{"name":"synaptic vesicle budding involved in synaptic vesicle endocytosis","type":"exact"}],"termid":"GO:0016185"}


id: PBO:0061108
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NLR family pyrin domain containing 1","termid":"PBO:0061108"}


id: PR:U3H0A9
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPCC1884.01 gene.","definition_xrefs":["UniProtKB:U3H0A9","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized protein SPCC1884.01 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC1884.01","synonyms":[{"name":"Spom972h-SPCC1884.01","type":"exact"}],"termid":"PR:U3H0A9"}


id: PBO:0054226
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1608","termid":"PBO:0054226"}


id: PBO:0072617
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"radial spoke head component 1","termid":"PBO:0072617"}


id: GO:0047204
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: D-glucarate + chlorogenate = (-)-quinate + 2-O-caffeoylglucarate.","definition_xrefs":["EC:2.3.1.98","RHEA:23204"],"direct_ancestors":[{"relation_name":"is_a","term_name":"O-hydroxycinnamoyltransferase activity","termid":"GO:0050737"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016746"}],"interesting_parent_ids":["GO:0016740","GO:0003674","GO:0003824","GO:0016746"],"is_obsolete":false,"name":"chlorogenate-glucarate O-hydroxycinnamoyltransferase activity","secondary_identifiers":["MetaCyc:2.3.1.98-RXN","KEGG_REACTION:R02998"],"synonyms":[{"name":"chlorogenate:glucarate O-(hydroxycinnamoyl)transferase activity","type":"related"},{"name":"chlorogenate:glucarate caffeoyltransferase activity","type":"related"},{"name":"chlorogenic acid:glucaric acid O-caffeoyltransferase activity","type":"related"}],"termid":"GO:0047204"}


id: PBO:0081535
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein 444 pseudogene 1","termid":"PBO:0081535"}


id: MOD:01567
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively replaces an N'-hydrogen atom of a histidine residue with the Applied Biosystems iTRAQ8plex-118 reporter+balance group.","definition_xrefs":["PubMed:18688235"],"direct_ancestors":[{"relation_name":"is_a","term_name":"modified L-histidine residue","termid":"MOD:00909"},{"relation_name":"is_a","term_name":"iTRAQ8plex-118 reporter+balance reagent acylated residue","termid":"MOD:01563"},{"relation_name":"is_a","term_name":"iTRAQ8plex reporter+balance reagent N-acylated residue","termid":"MOD:01710"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:00649"}],"interesting_parent_ids":["MOD:00649"],"is_obsolete":false,"name":"iTRAQ8plex-118 reporter+balance reagent N'-acylated histidine","synonyms":[{"name":"(4-methylpiperazin-1-yl)acetyl","type":"exact"}],"termid":"MOD:01567"}


id: GO:0042437
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of indole-3-acetic acid, a compound which functions as a growth regulator in plants.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"indoleacetic acid metabolic process","termid":"GO:0009683"},{"relation_name":"is_a","term_name":"auxin catabolic process","termid":"GO:0009852"},{"relation_name":"is_a","term_name":"indole-containing compound catabolic process","termid":"GO:0042436"},{"relation_name":"is_a","term_name":"monocarboxylic acid catabolic process","termid":"GO:0072329"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044248"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0044248","GO:0044281","GO:0008150"],"is_obsolete":false,"name":"indoleacetic acid catabolic process","synonyms":[{"name":"IAA catabolic process","type":"exact"},{"name":"indole acetic acid catabolic process","type":"exact"},{"name":"indole acetic acid catabolism","type":"exact"},{"name":"indoleacetic acid breakdown","type":"exact"},{"name":"indoleacetic acid catabolism","type":"exact"},{"name":"indoleacetic acid degradation","type":"exact"}],"termid":"GO:0042437"}


id: FYECO:0000356
data:
  {"annotation_feature_type":"gene","cv_name":"fission_yeast_phenotype_condition","definition":"An experimental condition in which CK-666 was added to the medium or assay buffer in excess compared to standard medium or assay buffers.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"grouping excess","termid":"FYECO:0000109"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"+ CK-666","synonyms":[{"name":"+ CK666","type":"exact"}],"termid":"FYECO:0000356"}


id: PBO:0077787
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DNA topoisomerase III alpha","termid":"PBO:0077787"}


id: PBO:0031475
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-growth_auxotrophic_for_adenine","termid":"PBO:0031475"}


id: GO:0102990
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 5-(pentadeca-8,11,14-trien-1-yl)resorcinol + S-adenosyl-L-methionine = H+ + 5-(pentadeca-8,11,14-trien-1-yl)resorcinol monomethyl ether + S-adenosyl-L-homocysteine.","definition_xrefs":["GOC:pz","EC:2.1.1.-"],"direct_ancestors":[{"relation_name":"is_a","term_name":"methyltransferase activity","termid":"GO:0008168"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016741"}],"interesting_parent_ids":["GO:0003674","GO:0016740","GO:0003824","GO:0016741"],"is_obsolete":false,"name":"5-n-alk(en)ylresorcinol O-methyltransferase activity","secondary_identifiers":["MetaCyc:RXN-9619","RHEA:26325"],"termid":"GO:0102990"}


id: PBO:0046900
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"family with sequence similarity 24 member A","termid":"PBO:0046900"}


id: PBO:0071542
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L35a pseudogene 7","termid":"PBO:0071542"}


id: FYPO:0000092
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A phenotype observed in the vegetative growth phase of the life cycle in which cells show increased sensitivity to amiodarone. Cells stop growing (and may die) at a concentration of amiodarone that allows wild type cells to grow.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased sensitivity to chemical during vegetative growth","termid":"FYPO:0000127"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0002683"},{"rel_name":"is_a","termid":"FYPO:0000003"},{"rel_name":"is_a","termid":"FYPO:0000139"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0005447","FYPO:0002683","FYPO:0000003","FYPO:0000139"],"is_obsolete":false,"name":"sensitive to amiodarone","synonyms":[{"name":"hypersensitive to amiodarone","type":"exact"},{"name":"sensitive to amiodarone during mitotic cell cycle","type":"related"},{"name":"sensitive to amiodarone during vegetative growth","type":"exact"}],"termid":"FYPO:0000092"}


id: PBO:0000911
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"phosphoribosylformylglycinamidine synthase Ade3 (predicted)","termid":"PBO:0000911"}


id: GO:0004807
data:
  {"annotated_genes":["SJAG_04192"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[112506],"is_not":false,"summary":null,"term":"GO:0004807"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: D-glyceraldehyde 3-phosphate = glycerone phosphate.","definition_xrefs":["RHEA:18585","EC:5.3.1.1"],"direct_ancestors":[{"relation_name":"is_a","term_name":"intramolecular oxidoreductase activity, interconverting aldoses and ketoses","termid":"GO:0016861"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04192":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016853"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016853"],"is_obsolete":false,"name":"triose-phosphate isomerase activity","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["MetaCyc:TRIOSEPISOMERIZATION-RXN","Reactome:R-HSA-70481","KEGG_REACTION:R01015","Reactome:R-HSA-70454"],"synonyms":[{"name":"D-glyceraldehyde-3-phosphate aldose-ketose-isomerase activity","type":"related"},{"name":"D-glyceraldehyde-3-phosphate ketol-isomerase activity","type":"related"},{"name":"phosphotriose isomerase activity","type":"related"},{"name":"triose phosphate mutase activity","type":"related"},{"name":"triose phosphoisomerase activity","type":"related"},{"name":"triosephosphate isomerase activity","type":"related"},{"name":"triosephosphate mutase activity","type":"related"}],"termid":"GO:0004807","terms_by_termid":{"GO:0004807":null}}


id: GO:1990703
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"OBSOLETE. The component of the Golgi medial membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.","definition_xrefs":["PMID:16038056","GOC:bhm","PMID:24119662"],"gene_count":0,"genotype_count":0,"name":"obsolete integral component of Golgi medial cisterna membrane (obsolete GO:1990703)","synonyms":[{"name":"integral component of medial-Golgi cisterna membrane","type":"exact"}],"termid":"GO:1990703"}


id: GO:0017052
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"OBSOLETE. (Was not defined before being made obsolete).","definition_xrefs":["GOC:jl"],"gene_count":0,"genotype_count":0,"name":"obsolete insulin-like growth factor binding protein (obsolete GO:0017052)","synonyms":[{"name":"insulin-like growth factor binding protein","type":"exact"}],"termid":"GO:0017052"}


id: GO:0002401
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Tolerance induction taking place in the mucosal-associated lymphoid tissue (MALT).","definition_xrefs":["ISBN:0781735149","GOC:jal"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mucosal tolerance induction","termid":"GO:0002427"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"tolerance induction in mucosal-associated lymphoid tissue","synonyms":[{"name":"tolerance induction in MALT","type":"exact"}],"termid":"GO:0002401"}


id: FYPO:0000982
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which the observed rate of glutamate dehydrogenase activity using NAPD+ as a cofactor is abnormal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal oxidoreductase activity","termid":"FYPO:0000689"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000654"},{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0000661"},{"rel_name":"is_a","termid":"FYPO:0000707"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0000654","FYPO:0000707","FYPO:0000661","FYPO:0001985","FYPO:0000652"],"is_obsolete":false,"name":"abnormal glutamate dehydrogenase (NADP+) activity","synonyms":[{"name":"abnormal NAD(P)H-dependent glutamate dehydrogenase activity","type":"exact"},{"name":"abnormal NADP-GDH activity","type":"exact"}],"termid":"FYPO:0000982"}


id: GO:0070858
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of bile acids.","definition_xrefs":["GOC:mah","GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of steroid biosynthetic process","termid":"GO:0010894"},{"relation_name":"is_a","term_name":"negative regulation of cellular biosynthetic process","termid":"GO:0031327"},{"relation_name":"is_a","term_name":"regulation of bile acid biosynthetic process","termid":"GO:0070857"},{"relation_name":"is_a","term_name":"negative regulation of bile acid metabolic process","termid":"GO:1904252"},{"relation_name":"negatively_regulates","term_name":"bile acid biosynthetic process","termid":"GO:0006699"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"negatively_regulates","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0044281"},{"rel_name":"negatively_regulates","termid":"GO:0006629"},{"rel_name":"regulates","termid":"GO:0006629"}],"interesting_parent_ids":["GO:0008150","GO:0006629","GO:0044281"],"is_obsolete":false,"name":"negative regulation of bile acid biosynthetic process","synonyms":[{"name":"down regulation of bile acid biosynthetic process","type":"exact"},{"name":"down-regulation of bile acid biosynthetic process","type":"exact"},{"name":"downregulation of bile acid biosynthetic process","type":"exact"},{"name":"inhibition of bile acid biosynthetic process","type":"narrow"},{"name":"negative regulation of bile acid anabolism","type":"exact"},{"name":"negative regulation of bile acid biosynthesis","type":"exact"},{"name":"negative regulation of bile acid formation","type":"exact"},{"name":"negative regulation of bile acid synthesis","type":"exact"}],"termid":"GO:0070858"}


id: PBO:0090468
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial [2Fe-2S] cluster assembly and protein import chaperone Mge1","termid":"PBO:0090468"}


id: GO:0030636
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The chemical reactions and pathways resulting in the formation of derivatives of acetic acid.","definition_xrefs":["GOC:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete acetate derivative biosynthetic process (obsolete GO:0030636)","synonyms":[{"name":"acetate derivative anabolism","type":"exact"},{"name":"acetate derivative biosynthesis","type":"exact"},{"name":"acetate derivative biosynthetic process","type":"exact"},{"name":"acetate derivative formation","type":"exact"},{"name":"acetate derivative synthesis","type":"exact"}],"termid":"GO:0030636"}


id: GO:2000657
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of apolipoprotein binding.","definition_xrefs":["GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of protein binding","termid":"GO:0032091"},{"relation_name":"is_a","term_name":"regulation of apolipoprotein binding","termid":"GO:2000656"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of apolipoprotein binding","termid":"GO:2000657"}


id: PBO:0060600
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"non-SMC condensin II complex subunit G2","termid":"PBO:0060600"}


id: PBO:0055006
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2421","termid":"PBO:0055006"}


id: PBO:0045248
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DNAJC27 antisense RNA 1","termid":"PBO:0045248"}


id: GO:0003841
data:
  {"annotated_genes":["SJAG_04792","SJAG_04041","SJAG_01957"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[86239,87360,100136],"is_not":false,"summary":null,"term":"GO:0003841"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: acyl-CoA + 1-acyl-sn-glycerol-3-phosphate = CoA + 1,2-diacyl-sn-glycerol-3-phosphate.","definition_xrefs":["EC:2.3.1.51","GOC:ab"],"direct_ancestors":[{"relation_name":"is_a","term_name":"acylglycerol O-acyltransferase activity","termid":"GO:0016411"},{"relation_name":"is_a","term_name":"lysophosphatidic acid acyltransferase activity","termid":"GO:0042171"}],"gene_count":3,"genes_by_uniquename":{"SJAG_01957":null,"SJAG_04041":null,"SJAG_04792":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016746"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016746","GO:0003674","GO:0003824","GO:0016740"],"is_obsolete":false,"name":"1-acylglycerol-3-phosphate O-acyltransferase activity","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["Reactome:R-HSA-8849345","MetaCyc:RXN-1623","Reactome:R-HSA-1482689","Reactome:R-HSA-75885","GO:0004469","Reactome:R-HSA-1482667","Reactome:R-HSA-1482894","Reactome:R-HSA-1482539","Reactome:R-HSA-1482547","Reactome:R-HSA-1482548","Reactome:R-HSA-1482636","RHEA:19709","Reactome:R-HSA-1482598"],"synonyms":[{"name":"1-acyl-sn-glycerol-3-phosphate acyltransferase activity","type":"exact"},{"name":"1-acyl-sn-glycero-3-phosphate acyltransferase activity","type":"related"},{"name":"1-acyl-sn-glycerol 3-phosphate acyltransferase activity","type":"related"},{"name":"1-acylglycero-3-phosphate acyltransferase activity","type":"related"},{"name":"1-acylglycerolphosphate acyltransferase activity","type":"related"},{"name":"1-acylglycerophosphate acyltransferase activity","type":"related"},{"name":"acyl-CoA:1-acyl-sn-glycerol-3-phosphate 2-O-acyltransferase activity","type":"related"},{"name":"lysophosphatidate acyltransferase activity","type":"exact"},{"name":"lysophosphatidic acid-acyltransferase activity","type":"related"}],"termid":"GO:0003841","terms_by_termid":{"GO:0003841":null}}


id: PBO:0044150
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CCCTC-binding factor like","termid":"PBO:0044150"}


id: PBO:0029795
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_protein_localization_to_cell_division_site","termid":"PBO:0029795"}


id: PBO:0062713
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 51 subfamily J member 1","termid":"PBO:0062713"}


id: PBO:0082569
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Checkpoint protein; involved in the activation of the DNA damage and meiotic pachytene checkpoints; subunit of a clamp loader that loads Rad17p-Mec3p-Ddc1p onto DNA; homolog of human and S. pombe Rad17 protein","termid":"PBO:0082569"}


id: GO:0060909
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of initiation of plasmid DNA replication that contributes to copy number maintenance.","definition_xrefs":["GOC:dph","GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of DNA-templated DNA replication initiation","termid":"GO:0030174"},{"relation_name":"part_of","term_name":"plasmid copy number maintenance","termid":"GO:0060908"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0006260"},{"rel_name":"regulates","termid":"GO:0006259"}],"interesting_parent_ids":["GO:0006259","GO:0008150","GO:0006260"],"is_obsolete":false,"name":"regulation of DNA replication initiation involved in plasmid copy number maintenance","termid":"GO:0060909"}


id: GO:0045849
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of nurse cell apoptotic process.","definition_xrefs":["GOC:go_curators","GOC:mtg_apoptosis"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of nurse cell apoptotic process","termid":"GO:0045477"},{"relation_name":"is_a","term_name":"negative regulation of apoptotic process involved in development","termid":"GO:1904746"},{"relation_name":"is_a","term_name":"negative regulation of reproductive process","termid":"GO:2000242"},{"relation_name":"negatively_regulates","term_name":"nurse cell apoptotic process","termid":"GO:0045476"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of nurse cell apoptotic process","synonyms":[{"name":"down regulation of nurse cell apoptosis","type":"exact"},{"name":"down-regulation of nurse cell apoptosis","type":"exact"},{"name":"downregulation of nurse cell apoptosis","type":"exact"},{"name":"inhibition of nurse cell apoptosis","type":"narrow"},{"name":"negative regulation of nurse cell apoptosis","type":"narrow"}],"termid":"GO:0045849"}


id: GO:0002639
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate, or extent of immunoglobulin production.","definition_xrefs":["GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of immunoglobulin production","termid":"GO:0002637"},{"relation_name":"is_a","term_name":"positive regulation of production of molecular mediator of immune response","termid":"GO:0002702"},{"relation_name":"positively_regulates","term_name":"immunoglobulin production","termid":"GO:0002377"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"positively_regulates","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0008150","GO:0010467"],"is_obsolete":false,"name":"positive regulation of immunoglobulin production","secondary_identifiers":["GO:0002642","GO:0051024"],"synonyms":[{"name":"activation of immunoglobulin production","type":"narrow"},{"name":"positive regulation of immunoglobulin biosynthetic process","type":"narrow"},{"name":"positive regulation of immunoglobulin secretion","type":"narrow"},{"name":"stimulation of immunoglobulin production","type":"narrow"},{"name":"up regulation of immunoglobulin production","type":"exact"},{"name":"up-regulation of immunoglobulin production","type":"exact"},{"name":"upregulation of immunoglobulin production","type":"exact"}],"termid":"GO:0002639"}


id: PBO:0080791
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"XPA, DNA damage recognition and repair factor","termid":"PBO:0080791"}


id: PBO:0090011
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNAi-mediated heterochromatin assembly helicase Hrr1","termid":"PBO:0090011"}


id: GO:0140240
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A neuron to neuron synapse of a pyramidal neuron in the entorhinal cortex onto a granule cell in the dentate gyrus of the hippocampus.","definition_xrefs":["PMID:29199135","PMID:22727665"],"direct_ancestors":[{"relation_name":"is_a","term_name":"synapse","termid":"GO:0045202"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"perforant pathway to dendrate granule cell synapse","synonyms":[{"name":"perforant pathway to DG granule cell synapse","type":"exact"}],"termid":"GO:0140240"}


id: PBO:0004651
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ADP-ribosylation factor Sar1","termid":"PBO:0004651"}


id: PBO:0039706
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"amyloid beta precursor like protein 1","termid":"PBO:0039706"}


id: MOD:00580
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"OBSOLETE because entry removed from Unimod. Remap potentially to MOD:00579 propionaldehyde +40","definition_xrefs":["Unimod:257"],"gene_count":0,"genotype_count":0,"name":"OBSOLETE MOD:00580 propionaldehyde +42 (obsolete MOD:00580)","termid":"MOD:00580"}


id: PBO:0078547
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tripartite motif containing 38","termid":"PBO:0078547"}


id: GO:0106142
data:
  {"annotated_genes":["SJAG_03713"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[94580],"is_not":false,"summary":null,"term":"GO:0106142"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: S-adenosyl-L-methionine + adenine(645) in 25S rRNA = S-adenosyl-L-homocysteine + N(1)-methyladenine(645) in 25S rRNA.","definition_xrefs":["EC:2.1.1.287","PMID:23180764"],"direct_ancestors":[{"relation_name":"is_a","term_name":"rRNA (adenine) methyltransferase activity","termid":"GO:0016433"}],"gene_count":1,"genes_by_uniquename":{"SJAG_03713":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016741"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0140098"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016740","GO:0140098","GO:0016741"],"is_obsolete":false,"name":"rRNA (adenine-N1-)-methyltransferase activity","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["RHEA:43792"],"synonyms":[{"name":"25S rRNA (adenine(645)-N(1))-methyltransferase","type":"related"},{"name":"25S rRNA m(1)A(645) methyltransferase","type":"related"}],"termid":"GO:0106142","terms_by_termid":{"GO:0106142":null}}


id: GO:0046105
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of thymidine, deoxyribosylthymine thymine 2-deoxyriboside, a deoxynucleoside very widely distributed but occurring almost entirely as phosphoric esters in deoxynucleotides and deoxyribonucleic acid, DNA.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"thymidine metabolic process","termid":"GO:0046104"},{"relation_name":"is_a","term_name":"pyrimidine deoxyribonucleoside biosynthetic process","termid":"GO:0046126"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0055086"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0055086","GO:0044281","GO:0008150"],"is_obsolete":false,"name":"thymidine biosynthetic process","synonyms":[{"name":"deoxyribosylthymine biosynthesis","type":"exact"},{"name":"deoxyribosylthymine biosynthetic process","type":"exact"},{"name":"thymidine anabolism","type":"exact"},{"name":"thymidine biosynthesis","type":"exact"},{"name":"thymidine formation","type":"exact"},{"name":"thymidine synthesis","type":"exact"}],"termid":"GO:0046105"}


id: PBO:0052574
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"KMT5A pseudogene 2","termid":"PBO:0052574"}


id: PATO:0001200
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A concave 3-D shape quality inhering in a bearer by virtue of the bearer's being shaped in the form of the letter T.","definition_xrefs":["WordNet:WordNet"],"direct_ancestors":[{"relation_name":"is_a","term_name":"tripartite","termid":"PATO:0001890"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"T-shaped","termid":"PATO:0001200"}


id: GO:0034204
data:
  {"annotated_genes":["SJAG_02943","SJAG_02957","SJAG_00230","SJAG_02132","SJAG_02897","SJAG_06440","SJAG_01095","SJAG_03774","SJAG_02581","SJAG_02114","SJAG_03050","SJAG_00669","SJAG_00018","SJAG_01470","SJAG_05209","SJAG_02516","SJAG_01945","SJAG_00589","SJAG_00587","SJAG_01731","SJAG_00576"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[60378],"is_not":false,"summary":null,"term":"GO:0034204"},{"annotations":[67815],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0140331"},{"annotations":[90596,108722],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0034203"},{"annotations":[98495,86712,86720,94099,101231,86716,105686,90597,86715,95625,86718,86714,98375,97438,96340,108661,86719,86717,86713],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0045332"},{"annotations":[92798],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0017121"}]},"cv_name":"biological_process","definition":"The translocation, or flipping, of lipid molecules from one monolayer of a membrane bilayer to the opposite monolayer.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"lipid transport","termid":"GO:0006869"},{"relation_name":"is_a","term_name":"regulation of membrane lipid distribution","termid":"GO:0097035"}],"gene_count":21,"genes_by_uniquename":{"SJAG_00018":null,"SJAG_00230":null,"SJAG_00576":null,"SJAG_00587":null,"SJAG_00589":null,"SJAG_00669":null,"SJAG_01095":null,"SJAG_01470":null,"SJAG_01731":null,"SJAG_01945":null,"SJAG_02114":null,"SJAG_02132":null,"SJAG_02516":null,"SJAG_02581":null,"SJAG_02897":null,"SJAG_02943":null,"SJAG_02957":null,"SJAG_03050":null,"SJAG_03774":null,"SJAG_05209":null,"SJAG_06440":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0061024"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006810","GO:0008150","GO:0061024","GO:0051179"],"is_obsolete":false,"name":"lipid translocation","references_by_uniquename":{"GO_REF:0000107":null,"GO_REF:0000108":null},"synonyms":[{"name":"intramembrane lipid transfer","type":"exact"}],"termid":"GO:0034204","terms_by_termid":{"GO:0017121":null,"GO:0034203":null,"GO:0034204":null,"GO:0045332":null,"GO:0140331":null}}


id: PBO:0054173
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1546","termid":"PBO:0054173"}


id: GO:0075244
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of oospore formation, a process in which male and female gametangia develop and fuse to form a thick-walled resting spore of oomycetes.","definition_xrefs":["GOC:pamgo_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of sexual sporulation resulting in formation of a cellular spore","termid":"GO:0043940"},{"relation_name":"regulates","term_name":"oospore formation","termid":"GO:0075243"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0007049"}],"interesting_parent_ids":["GO:0008150","GO:0007049"],"is_obsolete":false,"name":"regulation of oospore formation","termid":"GO:0075244"}


id: PBO:0059786
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MT-CYB pseudogene 12","termid":"PBO:0059786"}


id: PBO:0046527
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"endoplasmic reticulum oxidoreductase 1 beta","termid":"PBO:0046527"}


id: GO:0070871
data:
  {"annotated_genes":["SJAG_00667","SJAG_01888","SJAG_03444","SJAG_05001","SJAG_02718","SJAG_03646","SJAG_01017","SJAG_01171"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[98104,96296,107479,104234,98105,84506,85302,90203],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1904541"}]},"cv_name":"biological_process","definition":"A process of cell wall organization that contributes to conjugation with cellular fusion.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell wall organization","termid":"GO:0071555"},{"relation_name":"part_of","term_name":"conjugation with cellular fusion","termid":"GO:0000747"}],"gene_count":8,"genes_by_uniquename":{"SJAG_00667":null,"SJAG_01017":null,"SJAG_01171":null,"SJAG_01888":null,"SJAG_02718":null,"SJAG_03444":null,"SJAG_03646":null,"SJAG_05001":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0000747"},{"rel_name":"is_a","termid":"GO:0071554"}],"interesting_parent_ids":["GO:0008150","GO:0000747","GO:0071554"],"is_obsolete":false,"name":"cell wall organization involved in conjugation with cellular fusion","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"cell wall organisation involved in conjugation with cellular fusion","type":"exact"}],"termid":"GO:0070871","terms_by_termid":{"GO:1904541":null}}


id: GO:0035103
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The proteolytic release of a transcriptionally active sterol regulatory element binding protein (SREBP) from intracellular membranes, freeing it to move to the nucleus to upregulate transcription of target genes, in response to altered levels of one or more lipids.","definition_xrefs":["GOC:vw","GOC:bf","PMID:12923525"],"gene_count":0,"genotype_count":0,"name":"obsolete sterol regulatory element binding protein cleavage (obsolete GO:0035103)","synonyms":[{"name":"SREBP cleavage","type":"exact"},{"name":"sterol depletion response, SREBP cleavage","type":"exact"},{"name":"sterol regulatory element binding protein cleavage involved in ER-nuclear sterol response pathway","type":"narrow"}],"termid":"GO:0035103"}


id: PBO:0078369
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-Glu (anticodon TTC) 13-1","termid":"PBO:0078369"}


id: PBO:0045013
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"disco interacting protein 2 homolog B","termid":"PBO:0045013"}


id: PBO:0005688
data:
  {"annotation_feature_type":"gene","cv_name":"name_description","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Inner MTOC Attachment site","termid":"PBO:0005688"}


id: PR:O13696
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"An isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:CNA"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"isocitrate dehydrogenase [NAD] subunit 1, mitochondrial (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC11G7.03","secondary_identifiers":["UniProtKB:O13696"],"synonyms":[{"name":"NAD(+)-specific ICDH (Schizosaccharomyces pombe 972h-)","type":"broad"},{"name":"SPAC11G7.03","type":"related"},{"name":"Spom972h-IDH3G","type":"exact"},{"name":"isocitric dehydrogenase (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:O13696"}


id: GO:1900291
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of galactotriose transport.","definition_xrefs":["GOC:TermGenie","GOC:mengo_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of transport","termid":"GO:0051049"},{"relation_name":"regulates","term_name":"galactotriose transport","termid":"GO:2001093"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0008150","GO:0006810"],"is_obsolete":false,"name":"regulation of galactotriose transport","termid":"GO:1900291"}


id: GO:0030457
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. (Was not defined before being made obsolete).","definition_xrefs":["GOC:elh"],"gene_count":0,"genotype_count":0,"name":"obsolete activation of MAPKK (mating sensu Fungi) (obsolete GO:0030457)","synonyms":[{"name":"activation of MAPKK (mating sensu Fungi)","type":"exact"}],"termid":"GO:0030457"}


id: GO:0036097
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process involved in forming the mature 3' end of a miRNA from a pre-miRNA.","definition_xrefs":["GOC:sart","PMID:22055292"],"gene_count":0,"genotype_count":0,"name":"obsolete pre-miRNA 3'-end processing (obsolete GO:0036097)","synonyms":[{"name":"miRNA 3'-end processing","type":"broad"},{"name":"microRNA 3'-end processing","type":"broad"},{"name":"pre-miRNA 3'-end processing","type":"exact"}],"termid":"GO:0036097"}


id: GO:0032084
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of a type I restriction endodeoxyribonuclease activity.","definition_xrefs":["GOC:dph","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of restriction endodeoxyribonuclease activity","termid":"GO:0032072"},{"relation_name":"is_a","term_name":"regulation of ATP-dependent activity","termid":"GO:0043462"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0006259"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006259","GO:0008150"],"is_obsolete":false,"name":"regulation of type I site-specific deoxyribonuclease activity","synonyms":[{"name":"regulation of type I restriction endodeoxyribonuclease activity","type":"exact"},{"name":"type I restriction endodeoxyribonuclease regulator","type":"related"},{"name":"type I restriction enzyme regulator","type":"related"}],"termid":"GO:0032084"}


id: PBO:0030048
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_ferric_iron_import","termid":"PBO:0030048"}


id: PATO:0000473
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0000473 relative_quality value (obsolete PATO:0000473)","termid":"PATO:0000473"}


id: PBO:0030033
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-conjugation_without_glucose_starvation","termid":"PBO:0030033"}


id: PBO:0052191
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"potassium calcium-activated channel subfamily M regulatory beta subunit 1","termid":"PBO:0052191"}


id: GO:1903947
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of ventricular cardiac muscle cell action potential.","definition_xrefs":["GOC:TermGenie","PMID:25281747","GOC:mtg_cardiac_conduct_nov11","GOC:BHF","GOC:nc","GO_REF:0000058"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of action potential","termid":"GO:0045760"},{"relation_name":"is_a","term_name":"regulation of ventricular cardiac muscle cell action potential","termid":"GO:0098911"},{"relation_name":"is_a","term_name":"positive regulation of cardiac muscle cell contraction","termid":"GO:0106134"},{"relation_name":"positively_regulates","term_name":"ventricular cardiac muscle cell action potential","termid":"GO:0086005"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of ventricular cardiac muscle cell action potential","synonyms":[{"name":"activation of ventricular cardiac muscle cell action potential","type":"narrow"},{"name":"up regulation of ventricular cardiac muscle cell action potential","type":"exact"},{"name":"up-regulation of ventricular cardiac muscle cell action potential","type":"exact"},{"name":"upregulation of ventricular cardiac muscle cell action potential","type":"exact"}],"termid":"GO:1903947"}


id: PBO:0067529
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 673, pseudogene","termid":"PBO:0067529"}


id: PBO:0000543
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ATP-dependent DNA helicase Rdh54","termid":"PBO:0000543"}


id: PR:Q9UUF0
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A peroxisome biogenesis factor 10 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PANTHER:PTHR23350:SF0","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"peroxisome biogenesis factor 10 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC17A3.10","secondary_identifiers":["UniProtKB:Q9UUF0"],"synonyms":[{"name":"Spom972h-PEX10","type":"exact"},{"name":"peroxin-10 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"peroxisomal biogenesis factor 10 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"peroxisome assembly protein 10 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"pi036","type":"related"}],"termid":"PR:Q9UUF0"}


id: GO:0033017
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The lipid bilayer surrounding the sarcoplasmic reticulum.","definition_xrefs":["GOC:rph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"endoplasmic reticulum membrane","termid":"GO:0005789"},{"relation_name":"is_a","term_name":"bounding membrane of organelle","termid":"GO:0098588"},{"relation_name":"part_of","term_name":"sarcoplasmic reticulum","termid":"GO:0016529"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005783"},{"rel_name":"is_a","termid":"GO:0005789"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005737"}],"interesting_parent_ids":["GO:0005783","GO:0005575","GO:0005737","GO:0005789"],"is_obsolete":false,"name":"sarcoplasmic reticulum membrane","termid":"GO:0033017"}


id: GO:0039567
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process in which a virus stops, prevents, or reduces the frequency, rate or extent of host STAT1 (signal transducer and activator of transcription-1) activity by retaining STAT1 in the cytoplasm, so STAT1 is unable to translocate to the nucleus to activate transcription of its target genes.","definition_xrefs":["PMID:14557668","PMID:17287281","PMID:16254375"],"gene_count":0,"genotype_count":0,"name":"obsolete suppression by virus of host STAT1 activity by negative regulation of STAT protein import into nucleus (obsolete GO:0039567)","synonyms":[{"name":"cytoplasmic sequestration of STAT1","type":"broad"},{"name":"suppression by virus of host STAT1 activity by cytoplasmic sequestering of STAT1","type":"exact"}],"termid":"GO:0039567"}


id: PBO:0001670
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"deoxyuridine 5'-triphosphate nucleotidohydrolase (predicted)","termid":"PBO:0001670"}


id: GO:0043277
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The recognition and removal of an apoptotic cell by a neighboring cell or by a phagocyte.","definition_xrefs":["PMID:14685684","GOC:rk"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phagocytosis","termid":"GO:0006909"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0016192"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0051179"}],"interesting_parent_ids":["GO:0006810","GO:0016192","GO:0051179","GO:0008150"],"is_obsolete":false,"name":"apoptotic cell clearance","synonyms":[{"name":"apoptotic cell removal","type":"exact"},{"name":"efferocytosis","type":"exact"},{"name":"programmed cell clearance","type":"exact"}],"termid":"GO:0043277"}


id: GO:0006704
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of glucocorticoids, hormonal C21 corticosteroids synthesized from cholesterol.","definition_xrefs":["ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"glucocorticoid metabolic process","termid":"GO:0008211"},{"relation_name":"is_a","term_name":"steroid hormone biosynthetic process","termid":"GO:0120178"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006629"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0006629"],"is_obsolete":false,"name":"glucocorticoid biosynthetic process","synonyms":[{"name":"glucocorticoid anabolism","type":"exact"},{"name":"glucocorticoid biosynthesis","type":"exact"},{"name":"glucocorticoid formation","type":"exact"},{"name":"glucocorticoid synthesis","type":"exact"}],"termid":"GO:0006704"}


id: PBO:0048888
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"golgin A6 family like 7","termid":"PBO:0048888"}


id: PBO:0070866
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L14 pseudogene 4","termid":"PBO:0070866"}


id: MOD:01331
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-arginine residue to 6x(13)C labeled L-arginine.","definition_xrefs":["Unimod:188#R","OMSSA:136","PubMed:12716131"],"direct_ancestors":[{"relation_name":"is_a","term_name":"6x(13)C labeled residue","termid":"MOD:00544"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"6x(13)C labeled L-arginine","synonyms":[{"name":"13C(6) Silac label","type":"related"},{"name":"Label:13C(6)","type":"related"},{"name":"arg-13c6","type":"exact"}],"termid":"MOD:01331"}


id: PBO:0050448
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"heterogeneous nuclear ribonucleoprotein U like 2","termid":"PBO:0050448"}


id: PBO:0027434
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_replication_fork_arrest_at_mating-type_locus","termid":"PBO:0027434"}


id: PBO:0079334
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"testis-specific transcript, Y-linked 20","termid":"PBO:0079334"}


id: SO:0001186
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"An attribute describing the sequence of a transcript that has catalytic activity even without an associated ribonucleoprotein.","definition_xrefs":["RSC:cb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"enzymatic","termid":"SO:0001185"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribozymic","termid":"SO:0001186"}


id: GO:0015009
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving corrin, C19H22N4, the fundamental heterocyclic skeleton of the corrinoids. It consists of four reduced pyrrole rings joined into a macrocyclic ring. Corrin is the core of the vitamin B12 molecule.","definition_xrefs":["ISBN:0198506732","GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"tetrapyrrole metabolic process","termid":"GO:0033013"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0033013"}],"interesting_parent_ids":["GO:0033013","GO:0008150"],"is_obsolete":false,"name":"corrin metabolic process","synonyms":[{"name":"corrin metabolism","type":"exact"}],"termid":"GO:0015009"}


id: GO:0052437
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process by which an organism modulates the frequency, rate or extent of calcium ion fluxes as part of the defense response of the symbiont organism. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction.","definition_xrefs":["GOC:mtg_pamgo"],"gene_count":0,"genotype_count":0,"name":"obsolete modulation by organism of defense-related symbiont calcium ion flux (obsolete GO:0052437)","synonyms":[{"name":"modulation by organism of defense-related symbiont Ca2+ flux","type":"exact"},{"name":"modulation by organism of defense-related symbiont calcium ion flux","type":"exact"}],"termid":"GO:0052437"}


id: GO:0031411
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"An intracellular non-membrane-bounded organelle; a hollow structure made of protein, which usually has the form of a cylindrical tube closed by conical end caps. By regulating their relative gas vesicle content, aquatic microbes are able to perform vertical migrations.","definition_xrefs":["PMID:22147705","PMID:8177173"],"direct_ancestors":[{"relation_name":"is_a","term_name":"intracellular non-membrane-bounded organelle","termid":"GO:0043232"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"gas vesicle","synonyms":[{"name":"gas vacuole","type":"related"}],"termid":"GO:0031411"}


id: PBO:0079221
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TTBK2 antisense RNA 1","termid":"PBO:0079221"}


id: PBO:0065665
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protein tyrosine phosphatase receptor type N2","termid":"PBO:0065665"}


id: PBO:0000932
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"F-box/WD repeat protein protein Pof1","termid":"PBO:0000932"}


id: PBO:0001543
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Co-chaperone for ATPase activity (predicted)","termid":"PBO:0001543"}


id: PBO:0087097
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Ribosomal large subunit (60S) assembly factor; association of the N-terminal ubiquitin-like (UBL) domain of this preribosomal factor with the MIDAS domain in the Rea1p tail, promoted by the GTPase Nog2p, is required for the ATP-dependent dissociation of preribosomal factors including the Rix1p subcomplex, Rea1p, Nog2p and Rsa1p itself prior to nuclear export of pre-60S particles; contains WD-repeats and a UBL domain; localizes to the nucleolus","termid":"PBO:0087097"}


id: GO:0036262
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The appearance of granulysin due to biosynthesis or secretion following a cellular stimulus, resulting in an increase in its intracellular or extracellular levels.","definition_xrefs":["GOC:rv"],"direct_ancestors":[{"relation_name":"is_a","term_name":"production of molecular mediator of immune response","termid":"GO:0002440"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0010467"],"is_obsolete":false,"name":"granulysin production","termid":"GO:0036262"}


id: GO:0062202
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: peregrinol diphosphate = diphosphate + labd-13(16),14-diene-9-ol.","definition_xrefs":["PMID:29315936","RHEA:62184"],"direct_ancestors":[{"relation_name":"is_a","term_name":"carbon-oxygen lyase activity, acting on phosphates","termid":"GO:0016838"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016829"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016829"],"is_obsolete":false,"name":"Labd-13(16),14-diene-9-ol synthase activity","termid":"GO:0062202"}


id: PBO:0089040
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"alcohol dehydrogenase, Adh1-like","termid":"PBO:0089040"}


id: GO:0140905
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: R-CH + a halogen + H2O2 = R-C-halogen + H2O.","definition_xrefs":["PMID:28466644","PMID:34368824"],"direct_ancestors":[{"relation_name":"is_a","term_name":"peroxidase activity","termid":"GO:0004601"},{"relation_name":"is_a","term_name":"halogenase activity","termid":"GO:0140906"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0016491","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"haloperoxidase activity","termid":"GO:0140905"}


id: GO:0033522
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The modification of histone H2A by addition of one or more ubiquitin groups.","definition_xrefs":["GOC:bf","PMID:18430235","GOC:mah","PMID:15509584","PMID:16473935"],"gene_count":0,"genotype_count":0,"name":"obsolete histone H2A ubiquitination (obsolete GO:0033522)","termid":"GO:0033522"}


id: PBO:0044891
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DEP domain containing 1 pseudogene 2","termid":"PBO:0044891"}


id: PATO:0000886
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0000886 absolute litter size value (obsolete PATO:0000886)","termid":"PATO:0000886"}


id: PBO:0042445
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CDC42 effector protein 3 pseudogene 1","termid":"PBO:0042445"}


id: FYPO:0002592
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which histone phosphorylation does not occur. All histone phosphorylation may be affected, or phosphorylation of specific sites on specific histones may be abolished.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abolished protein modification during vegetative growth","termid":"FYPO:0000544"},{"relation_name":"is_a","term_name":"abnormal histone phosphorylation during vegetative growth","termid":"FYPO:0002591"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0002274"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0002494"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0002494","FYPO:0005447","FYPO:0001985","FYPO:0000002","FYPO:0002274","FYPO:0001320"],"is_obsolete":false,"name":"abolished histone phosphorylation during vegetative growth","synonyms":[{"name":"abolished histone phosphorylation during mitotic cell cycle","type":"related"},{"name":"histone phosphorylation abolished during vegetative growth","type":"exact"},{"name":"histone phosphorylation absent during vegetative growth","type":"exact"}],"termid":"FYPO:0002592"}


id: GO:0061968
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The organization process that preserves the asymmetry in an organism's body plan or part of an organism with respect to the left and right halves.","definition_xrefs":["PMID:18629866","GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pattern specification process","termid":"GO:0007389"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"maintenance of left/right asymmetry","termid":"GO:0061968"}


id: PBO:0029973
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_cellular_response_to_gamma_radiation","termid":"PBO:0029973"}


id: GO:0046106
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of thymine, 5-methyluracil, one of the two major pyrimidine bases present (as thymidine) in DNA but not found in RNA other than (as ribothymidine) in transfer RNA, where it is a minor base.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pyrimidine nucleobase biosynthetic process","termid":"GO:0019856"},{"relation_name":"is_a","term_name":"thymine metabolic process","termid":"GO:0019859"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0055086"}],"interesting_parent_ids":["GO:0008150","GO:0055086","GO:0044281"],"is_obsolete":false,"name":"thymine biosynthetic process","synonyms":[{"name":"thymine anabolism","type":"exact"},{"name":"thymine biosynthesis","type":"exact"},{"name":"thymine formation","type":"exact"},{"name":"thymine synthesis","type":"exact"}],"termid":"GO:0046106"}


id: GO:0060894
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which a cell becomes capable of differentiating autonomously into a limb spinous cell in an environment that is neutral with respect to the developmental pathway; upon specification, the cell fate can be reversed.","definition_xrefs":["GOC:dph","GOC:sdb_2009","GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"epidermal cell fate specification","termid":"GO:0009957"},{"relation_name":"is_a","term_name":"cell fate specification involved in pattern specification","termid":"GO:0060573"},{"relation_name":"part_of","term_name":"limb epidermis stratification","termid":"GO:0060888"},{"relation_name":"part_of","term_name":"limb spinous cell differentiation","termid":"GO:0060890"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"limb spinous cell fate specification","termid":"GO:0060894"}


id: PBO:0028295
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_dioxygenase_activity","termid":"PBO:0028295"}


id: PR:O13298
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- hos2 gene.","definition_xrefs":["PRO:DNx","UniProtKB:O13298"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"histone deacetylase phd1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC3G9.07c","synonyms":[{"name":"Spom972h-hos2","type":"exact"}],"termid":"PR:O13298"}


id: CHEBI:34653
data:
  {"annotation_feature_type":"gene","cv_name":"chebi_ontology","direct_ancestors":[{"relation_name":"is_a","term_name":"chemical entity","termid":"CHEBI:24431"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Congo Red","termid":"CHEBI:34653"}


id: PBO:0067628
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 800, pseudogene","termid":"PBO:0067628"}


id: PBO:0075493
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SPATA31 subfamily F member 3","termid":"PBO:0075493"}


id: SO:1000027
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A transversion from guanine to thymine.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"purine_to_pyrimidine_transversion","termid":"SO:1000023"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"G_to_T_transversion","synonyms":[{"name":"G to T transversion","type":"exact"}],"termid":"SO:1000027"}


id: GO:0005739
data:
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id: PR:O14345
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  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A palmitoyltransferase ZDHHC21 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx","OMA:SCHPO02966"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"palmitoyltransferase pfa3 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC2F12.15c","secondary_identifiers":["UniProtKB:O14345"],"synonyms":[{"name":"Spom972h-ZDHHC21","type":"exact"},{"name":"protein fatty acyltransferase 3 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:O14345"}


id: PBO:0050011
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"hexokinase 3","termid":"PBO:0050011"}


id: GO:0061370
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of testosterone, an androgen having 17beta-hydroxy and 3-oxo groups, together with unsaturation at C-4 C-5.","definition_xrefs":["GOC:yaf","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"steroid biosynthetic process","termid":"GO:0006694"},{"relation_name":"is_a","term_name":"ketone biosynthetic process","termid":"GO:0042181"},{"relation_name":"is_a","term_name":"olefinic compound biosynthetic process","termid":"GO:0120255"},{"relation_name":"is_a","term_name":"organic hydroxy compound biosynthetic process","termid":"GO:1901617"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006629"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0006629","GO:0044281"],"is_obsolete":false,"name":"testosterone biosynthetic process","termid":"GO:0061370"}


id: SO:0000655
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"An RNA transcript that does not encode for a protein rather the RNA molecule is the gene product.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mature_transcript","termid":"SO:0000233"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ncRNA","secondary_identifiers":["http://www.gencodegenes.org/gencode_biotypes.html","http://en.wikipedia.org/wiki/NcRNA"],"synonyms":[{"name":"INSDC_qualifier:other","type":"broad"},{"name":"known_ncrna","type":"exact"},{"name":"noncoding RNA","type":"exact"}],"termid":"SO:0000655"}


id: PBO:0040770
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"BEN domain containing 5","termid":"PBO:0040770"}


id: GO:0004122
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: L-serine + L-homocysteine = cystathionine + H2O.","definition_xrefs":["EC:4.2.1.22"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hydro-lyase activity","termid":"GO:0016836"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016829"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016829"],"is_obsolete":false,"name":"cystathionine beta-synthase activity","secondary_identifiers":["Reactome:R-HSA-1614524","MetaCyc:CYSTATHIONINE-BETA-SYNTHASE-RXN","RHEA:10112"],"synonyms":[{"name":"L-serine hydro-lyase (adding homocysteine)","type":"related"},{"name":"L-serine hydro-lyase (adding homocysteine; L-cystathionine-forming)","type":"related"},{"name":"beta-thionase activity","type":"related"},{"name":"methylcysteine synthase activity","type":"related"},{"name":"serine sulfhydrase activity","type":"related"},{"name":"serine sulfhydrylase activity","type":"related"}],"termid":"GO:0004122"}


id: GO:1900674
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of olefin.","definition_xrefs":["GOC:TermGenie","GOC:mengo_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hydrocarbon biosynthetic process","termid":"GO:0120251"},{"relation_name":"is_a","term_name":"olefinic compound biosynthetic process","termid":"GO:0120255"},{"relation_name":"is_a","term_name":"olefin metabolic process","termid":"GO:1900673"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"olefin biosynthetic process","synonyms":[{"name":"olefin anabolism","type":"exact"},{"name":"olefin biosynthesis","type":"exact"},{"name":"olefin formation","type":"exact"},{"name":"olefin synthesis","type":"exact"}],"termid":"GO:1900674"}


id: PBO:0043582
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"collagen type XIV alpha 1 chain","termid":"PBO:0043582"}


id: PBO:0055661
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"lincRNA adipogenesis and lipogenesis associated","termid":"PBO:0055661"}


id: PBO:0091580
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial intermembrane space protein, mature-T-Cell Proliferation I type ortholog, unknown biological role Cmc4","termid":"PBO:0091580"}


id: PBO:0028142
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_protein_phosphorylation_during_cellular_response_to_oxidative_stress","termid":"PBO:0028142"}


id: GO:0018940
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving orcinol (5-methyl-1,3-benzenediol), an aromatic compound derived from the fermentation of lichen, and synthesized, probably as a fungicide, by some higher plants.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phenol-containing compound metabolic process","termid":"GO:0018958"},{"relation_name":"is_a","term_name":"secondary metabolic process","termid":"GO:0019748"},{"relation_name":"is_a","term_name":"toluene-containing compound metabolic process","termid":"GO:0072490"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0019748"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0019748"],"is_obsolete":false,"name":"orcinol metabolic process","secondary_identifiers":["MetaCyc:P342-PWY","UM-BBD_pathwayID:orc"],"synonyms":[{"name":"orcin metabolic process","type":"exact"},{"name":"orcin metabolism","type":"exact"},{"name":"orcinol metabolism","type":"exact"}],"termid":"GO:0018940"}


id: GO:0008527
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Combining with soluble compounds to initiate a change in cell activity. These receptors are responsible for the sense of taste.","definition_xrefs":["GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"transmembrane signaling receptor activity","termid":"GO:0004888"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0038023"}],"interesting_parent_ids":["GO:0038023","GO:0003674"],"is_obsolete":false,"name":"taste receptor activity","synonyms":[{"name":"gustatory receptor","type":"exact"}],"termid":"GO:0008527"}


id: PBO:0090169
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cell surface protein involved in ascospore wall assembly, GPI anchored Meu10","termid":"PBO:0090169"}


id: GO:0141193
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The series of molecular signals initiated by a signaling molecule binding to its nuclear receptor inside the cell, and ending with the regulation of a downstream cellular process, e.g. transcription.","definition_xrefs":["PMID:25614732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"intracellular receptor signaling pathway","termid":"GO:0030522"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"nuclear receptor signaling pathway","termid":"GO:0141193"}


id: GO:0090179
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The series of molecular signals initiated by binding of a Wnt protein to a receptor on the surface of the target cell where activated receptors signal via downstream effectors that modulates the establishment of planar polarity contributing to neural tube closure.","definition_xrefs":["GOC:tb","GOC:ascb_2009","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Wnt signaling pathway, planar cell polarity pathway","termid":"GO:0060071"},{"relation_name":"is_a","term_name":"regulation of establishment of planar polarity involved in neural tube closure","termid":"GO:0090178"},{"relation_name":"part_of","term_name":"neural tube closure","termid":"GO:0001843"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"planar cell polarity pathway involved in neural tube closure","termid":"GO:0090179"}


id: GO:0005976
data:
  {"annotated_genes":["SJAG_01288","SJAG_01376","SJAG_01453","SJAG_03444","SJAG_01171","SJAG_00485","SJAG_03295","SJAG_02178","SJAG_01963","SJAG_04864","SJAG_02446","SJAG_04184","SJAG_03587","SJAG_02076","SJAG_01783","SJAG_00115","SJAG_00218","SJAG_03851","SJAG_04462","SJAG_03013","SJAG_03123","SJAG_03824","SJAG_04878","SJAG_01290","SJAG_01835","SJAG_04483","SJAG_01561","SJAG_02649","SJAG_01089","SJAG_04771","SJAG_04963","SJAG_02718","SJAG_06309","SJAG_00610","SJAG_00424","SJAG_01017","SJAG_00771","SJAG_02131","SJAG_02192","SJAG_02478","SJAG_05285","SJAG_05001","SJAG_04236","SJAG_04327","SJAG_00963","SJAG_04668","SJAG_00876","SJAG_03705","SJAG_01426","SJAG_03057","SJAG_01209","SJAG_04509","SJAG_00183","SJAG_04073","SJAG_00620","SJAG_04666","SJAG_04868","SJAG_01787","SJAG_02590","SJAG_01888","SJAG_01028","SJAG_02916","SJAG_00667","SJAG_03646","SJAG_02222","SJAG_02278"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[86792,90388,112698,98611],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006078"},{"annotations":[101914,96770,91424,89505],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0051072"},{"annotations":[110537],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0030979"},{"annotations":[107476],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0072316"},{"annotations":[90635],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0034413"},{"annotations":[105473],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0034412"},{"annotations":[84923],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0034217"},{"annotations":[97667,87943],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0034232"},{"annotations":[87767],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0051274"},{"annotations":[85301,115483],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0030995"},{"annotations":[90200,96295],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0044347"},{"annotations":[90202,107478],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0072000"},{"annotations":[110158],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0046379"},{"annotations":[85352,110538,105244,113908,100330],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0070600"},{"annotations":[87768,105475,87758,84296,103942,102255,111967,109332],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0071970"},{"annotations":[98797,104781],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0070880"},{"annotations":[98102,98103,91277,104233],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0070879"},{"annotations":[102257],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0051278"},{"annotations":[84913,102849],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0071966"},{"annotations":[98106,102850,84508,98107,104235],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0009251"},{"annotations":[105069],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0005978"},{"annotations":[99463],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0005980"},{"annotations":[114597,110596],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0005977"},{"annotations":[104817,105944,96435,94774,86285,93777],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0061723"},{"annotations":[87123,77876],"is_not":false,"rel_names":["negatively_regulates","regulates"],"summary":null,"term":"GO:0045719"},{"annotations":[111766,92283,83677,104559,92284],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0000272"},{"annotations":[88596],"is_not":false,"rel_names":["positively_regulates","regulates"],"summary":null,"term":"GO:0060635"},{"annotations":[83744,88599],"is_not":false,"rel_names":["positively_regulates","regulates"],"summary":null,"term":"GO:0140748"},{"annotations":[84124],"is_not":false,"rel_names":["regulates"],"summary":null,"term":"GO:0032951"},{"annotations":[101494,88585,114021,86965,99004,88601],"is_not":false,"rel_names":["regulates"],"summary":null,"term":"GO:0090334"},{"annotations":[99006,88605,85643,91109],"is_not":false,"rel_names":["regulates"],"summary":null,"term":"GO:0070610"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways involving a polysaccharide, a polymer of many (typically more than 10) monosaccharide residues linked glycosidically.","definition_xrefs":["ISBN:0198547684"],"direct_ancestors":[{"relation_name":"is_a","term_name":"carbohydrate metabolic process","termid":"GO:0005975"},{"relation_name":"is_a","term_name":"macromolecule metabolic 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metabolic process","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null,"PMID:24699070":null},"secondary_identifiers":["GO:0044263"],"synonyms":[{"name":"glycan metabolic process","type":"narrow"},{"name":"glycan metabolism","type":"narrow"},{"name":"multicellular organismal polysaccharide metabolic process","type":"narrow"},{"name":"polysaccharide metabolism","type":"exact"}],"termid":"GO:0005976","terms_by_termid":{"GO:0000272":null,"GO:0005977":null,"GO:0005978":null,"GO:0005980":null,"GO:0006078":null,"GO:0009251":null,"GO:0030979":null,"GO:0030995":null,"GO:0032951":null,"GO:0034217":null,"GO:0034232":null,"GO:0034412":null,"GO:0034413":null,"GO:0044347":null,"GO:0045719":null,"GO:0046379":null,"GO:0051072":null,"GO:0051274":null,"GO:0051278":null,"GO:0060635":null,"GO:0061723":null,"GO:0070600":null,"GO:0070610":null,"GO:0070879":null,"GO:0070880":null,"GO:0071966":null,"GO:0071970":null,"GO:0072000":null,"GO:0072316":null,"GO:0090334":null,"GO:0140748":null}}


id: PBO:0080665
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"WAP four-disulfide core domain 10B","termid":"PBO:0080665"}


id: GO:0018008
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The myristoylation of the N-terminal glycine of proteins to form the derivative N-myristoyl-glycine.","definition_xrefs":["RESID:AA0059"],"direct_ancestors":[{"relation_name":"is_a","term_name":"N-terminal protein myristoylation","termid":"GO:0006499"},{"relation_name":"is_a","term_name":"peptidyl-glycine modification","termid":"GO:0018201"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0042158"}],"interesting_parent_ids":["GO:0008150","GO:0042158"],"is_obsolete":false,"name":"N-terminal peptidyl-glycine N-myristoylation","synonyms":[{"name":"N-terminal peptidyl-glycine N-myristylation","type":"exact"}],"termid":"GO:0018008"}


id: PBO:0054007
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1337","termid":"PBO:0054007"}


id: PBO:0091705
data:
  {"annotation_feature_type":"gene","cv_name":"complementation","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"not functionally complemented by Drosophila U2af50","termid":"PBO:0091705"}


id: GO:0102381
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: stevioside + UDP-alpha-D-glucose = rebaudioside A + UDP + H+.","definition_xrefs":["GOC:pz","EC:2.4.1.-"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hexosyltransferase activity","termid":"GO:0016758"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016757"},{"rel_name":"is_a","termid":"GO:0016740"}],"interesting_parent_ids":["GO:0016757","GO:0003824","GO:0003674","GO:0016740"],"is_obsolete":false,"name":"stevioside glucosyltransferase activity (rebaudioside A forming)","secondary_identifiers":["MetaCyc:RXN-13517"],"termid":"GO:0102381"}


id: GO:0106106
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process by which heat is generated by increasing metabolism in response to cold ambient temperatures in order to maintain a stable core body temperature.","definition_xrefs":["PMID:27876809"],"direct_ancestors":[{"relation_name":"is_a","term_name":"temperature homeostasis","termid":"GO:0001659"},{"relation_name":"is_a","term_name":"adaptive thermogenesis","termid":"GO:1990845"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cold-induced thermogenesis","synonyms":[{"name":"CIT","type":"related"}],"termid":"GO:0106106"}


id: PBO:0030366
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-elongated_multinucleate_multiseptate_vegetative_cell,_single_septa_between_nuclei","termid":"PBO:0030366"}


id: PBO:0082645
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Component of RNA polymerase transcription factor TFIIH holoenzyme; acts as dsDNA-dependent translocase in context of TFIIH, unwinds DNA strands during initiation and promotes transcription start site (TSS) scanning; has DNA-dependent ATPase/helicase activity; interacts functionally with TFIIB, has roles in TSS selection and gene looping to juxtapose initiation and termination regions; involved in DNA repair; relocalizes to cytosol under hypoxia; homolog of human ERCC3","termid":"PBO:0082645"}


id: PBO:0086115
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein required for cytochrome c oxidase assembly; located in the cytosol and mitochondrial intermembrane space; putative copper metallochaperone that delivers copper to cytochrome c oxidase; contains twin cysteine-x9-cysteine motifs","termid":"PBO:0086115"}


id: PR:Q9HDV5
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- mrp7 gene.","definition_xrefs":["UniProtKB:Q9HDV5","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"54S ribosomal protein L27, mitochondrial (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAP19A11.05c","synonyms":[{"name":"Spom972h-mrp7","type":"exact"}],"termid":"PR:Q9HDV5"}


id: GO:0030801
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways involving cyclic nucleotides.","definition_xrefs":["GOC:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete positive regulation of cyclic nucleotide metabolic process (obsolete GO:0030801)","synonyms":[{"name":"activation of cyclic nucleotide metabolic process","type":"narrow"},{"name":"positive regulation of cyclic nucleotide metabolism","type":"exact"},{"name":"stimulation of cyclic nucleotide metabolic process","type":"narrow"},{"name":"up regulation of cyclic nucleotide metabolic process","type":"exact"},{"name":"up-regulation of cyclic nucleotide metabolic process","type":"exact"},{"name":"upregulation of cyclic nucleotide metabolic process","type":"exact"}],"termid":"GO:0030801"}


id: PBO:0003717
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ataxin-2 homolog (predicted)","termid":"PBO:0003717"}


id: PBO:0083566
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Dubious open reading frame; unlikely to encode a functional protein, based on available experimental and comparative sequence data; partially overlaps verified ORF DNF2/YDR093W","termid":"PBO:0083566"}


id: PBO:0051472
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"immunoglobulin lambda variable (IV)-53 (pseudogene)","termid":"PBO:0051472"}


id: PATO:0002469
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"Structural quality inhereing in a bearer in which a joint has apposed bony surfaces united by fibrous tissue, permitting no movement; found only between bones.","definition_xrefs":["PATOC:WD"],"direct_ancestors":[{"relation_name":"is_a","term_name":"structure","termid":"PATO:0000141"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sutured to","termid":"PATO:0002469"}


id: GO:1901190
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of formation of translation initiation ternary complex.","definition_xrefs":["GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of protein-containing complex assembly","termid":"GO:0043254"},{"relation_name":"regulates","term_name":"formation of translation initiation ternary complex","termid":"GO:0001677"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0065003"},{"rel_name":"regulates","termid":"GO:0044085"}],"interesting_parent_ids":["GO:0008150","GO:0065003","GO:0044085"],"is_obsolete":false,"name":"regulation of formation of translation initiation ternary complex","synonyms":[{"name":"regulation of translation initiation ternary complex assembly","type":"exact"}],"termid":"GO:1901190"}


id: PBO:0084117
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Helicase-like protein encoded within the telomeric Y' element; relocalizes from mitochondrion to cytoplasm upon DNA replication stress","termid":"PBO:0084117"}


id: PR:O94529
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A FACT complex subunit SSRP1 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx","OMA:SCHPO03592"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"FACT complex subunit pob3 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC609.05","secondary_identifiers":["UniProtKB:O94529"],"synonyms":[{"name":"Spom972h-SSRP1","type":"exact"},{"name":"facilitates chromatin transcription complex subunit pob3 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:O94529"}


id: PBO:0002143
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"F-box protein Pof8","termid":"PBO:0002143"}


id: GO:0052545
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process in which callose is transported to, and/or maintained in, a specific location. Callose is a linear 1,3-beta-d-glucan formed from UDP-glucose and is found in certain plant cell walls.","definition_xrefs":["PMID:18397379","GOC:mtg_pamgo_17jul06"],"direct_ancestors":[{"relation_name":"is_a","term_name":"polysaccharide localization","termid":"GO:0033037"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0051179"}],"interesting_parent_ids":["GO:0051179","GO:0008150"],"is_obsolete":false,"name":"callose localization","synonyms":[{"name":"callose localisation","type":"exact"}],"termid":"GO:0052545"}


id: PBO:0063583
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PET100 cytochrome c oxidase chaperone","termid":"PBO:0063583"}


id: PBO:0054159
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1526","termid":"PBO:0054159"}


id: PBO:0082501
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Catalytic subunit of DNA polymerase delta; responsible for most of lagging strand DNA synthesis; required for chromosomal DNA replication during mitosis and meiosis, intragenic recombination, repair of double strand DNA breaks, and DNA replication during nucleotide excision repair (NER)","termid":"PBO:0082501"}


id: PBO:0054005
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1333","termid":"PBO:0054005"}


id: PBO:0056733
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mesoderm specific transcript pseudogene 2","termid":"PBO:0056733"}


id: PBO:0084007
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Glycogen branching enzyme, involved in glycogen accumulation; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm in a punctate pattern; relocalizes from nucleus to cytoplasmic foci upon DNA replication stress; glycogen accumulation defect of the null mutant is functionally complemented by human GBE1, which is associated with glycogen storage disease","termid":"PBO:0084007"}


id: PBO:0054741
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2150","termid":"PBO:0054741"}


id: PBO:0030063
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_phosphoglycerate_mutase_activity","termid":"PBO:0030063"}


id: GO:0019778
data:
  {"annotated_genes":["SJAG_00645"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[107857],"is_not":false,"summary":null,"term":"GO:0019778"}]},"cv_name":"molecular_function","definition":"Catalysis of the activation of the small ubiquitin-related modifier APG12, through the formation of an ATP-dependent high-energy thiolester bond.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ubiquitin-like modifier activating enzyme activity","termid":"GO:0008641"}],"gene_count":1,"genes_by_uniquename":{"SJAG_00645":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0140096"},{"rel_name":"is_a","termid":"GO:0016874"}],"interesting_parent_ids":["GO:0140096","GO:0003824","GO:0016874","GO:0003674"],"is_obsolete":false,"name":"Atg12 activating enzyme activity","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"APG12 activating enzyme activity","type":"related"}],"termid":"GO:0019778","terms_by_termid":{"GO:0019778":null}}


id: GO:0004980
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Combining with melanocyte-stimulating hormone to initiate a change in cell activity.","definition_xrefs":["PMID:7581459","GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"melanocortin receptor activity","termid":"GO:0004977"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0038023"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0038023"],"is_obsolete":false,"name":"melanocyte-stimulating hormone receptor activity","synonyms":[{"name":"MSH receptor activity","type":"broad"},{"name":"MSHR activity","type":"broad"},{"name":"melanocyte stimulating hormone receptor activity","type":"exact"},{"name":"melanophore-stimulating hormone receptor activity","type":"exact"}],"termid":"GO:0004980"}


id: PBO:0041724
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"calcium/calmodulin dependent protein kinase IG","termid":"PBO:0041724"}


id: FYPO:0007470
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype that affects histone modification during G0 phase.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal histone modification","termid":"FYPO:0006458"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0002274"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0002494"}],"interesting_parent_ids":["FYPO:0002274","FYPO:0005447","FYPO:0000002","FYPO:0002494","FYPO:0001985"],"is_obsolete":false,"name":"abnormal histone modification during G0","synonyms":[{"name":"abnormal histone modification during cell quiescence","type":"exact"},{"name":"abnormal histone modification during quiescence","type":"exact"}],"termid":"FYPO:0007470"}


id: GO:0039557
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process in which a symbiont interferes with, inhibits or disrupts a cytoplasmic pattern recognition receptor signaling pathway by reducing the activity of IRF7 (interferon regulatory factor-7). IRF7 a transcription factor in the RIG-I/MDA-5 signaling pathway. Viral infection triggers phosphorylation of cytoplasmic IRF7, which allows IRF7 to form a homodimer, migrate to the nucleus, and activate transcription of IFN-alpha and IFN-beta genes.","definition_xrefs":["PMID:11943871","PMID:16014964","PMID:19557165"],"direct_ancestors":[{"relation_name":"is_a","term_name":"symbiont-mediated suppression of cytoplasmic pattern recognition receptor signaling pathway","termid":"GO:0039537"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"symbiont-mediated suppression of host cytoplasmic pattern recognition receptor signaling pathway via inhibition of IRF7 activity","secondary_identifiers":["VZ:653"],"synonyms":[{"name":"inhibition of host IRF7 by virus","type":"related"},{"name":"inhibition of host interferon regulatory factor-7 by virus","type":"related"},{"name":"suppression by virus of host IRF7 activity","type":"related"},{"name":"suppression by virus of host interferon regulatory factor 7 activity","type":"related"},{"name":"suppression by virus of host viral-induced cytoplasmic pattern recognition receptor signaling pathway via inhibition of IRF7 activity","type":"narrow"}],"termid":"GO:0039557"}


id: GO:0009360
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The DNA polymerase III holoenzyme is a complex that contains 10 different types of subunits. These subunits are organized into 3 functionally essential sub-assemblies: the pol III core, the beta sliding clamp processivity factor and the clamp-loading complex. The pol III core carries out the polymerase and the 3'-5' exonuclease proofreading activities. The polymerase is tethered to the template via the sliding clamp processivity factor. The clamp-loading complex assembles the beta processivity factor onto the primer template and plays a central role in the organization and communication at the replication fork.","definition_xrefs":["PMID:11525729","PMID:12940977","UniProt:P06710"],"direct_ancestors":[{"relation_name":"is_a","term_name":"DNA polymerase complex","termid":"GO:0042575"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575","GO:0032991"],"is_obsolete":false,"name":"DNA polymerase III complex","synonyms":[{"name":"DNA polymerase III holoenzyme complex","type":"exact"}],"termid":"GO:0009360"}


id: GO:0016602
data:
  {"annotated_genes":["SJAG_00698","SJAG_04607","SJAG_01062","SJAG_05247"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[89890,100410,105862,108044],"is_not":false,"summary":null,"term":"GO:0016602"}]},"cv_name":"cellular_component","definition":"A heteromeric transcription factor complex that binds to the CCAAT-box upstream of promoters; functions as both an activator and a repressor, depending on its interacting cofactors. Typically trimeric consisting of NFYA, NFYB and NFYC subunits. In Saccharomyces, it activates the transcription of genes in response to growth in a nonfermentable carbon source and consists of four known subunits: HAP2, HAP3, HAP4 and HAP5.","definition_xrefs":["PMID:7828851","GOC:bhm"],"direct_ancestors":[{"relation_name":"is_a","term_name":"RNA polymerase II transcription regulator complex","termid":"GO:0090575"}],"gene_count":4,"genes_by_uniquename":{"SJAG_00698":null,"SJAG_01062":null,"SJAG_04607":null,"SJAG_05247":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005634"}],"interesting_parent_ids":["GO:0005575","GO:0005634","GO:0032991"],"is_obsolete":false,"name":"CCAAT-binding factor complex","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"CBF complex","type":"related"},{"name":"NF-Y transcription factor complex","type":"related"},{"name":"nuclear transcription factor Y complex","type":"related"}],"termid":"GO:0016602","terms_by_termid":{"GO:0016602":null}}


id: GO:0032423
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of mismatch repair.","definition_xrefs":["GOC:vk"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of DNA repair","termid":"GO:0006282"},{"relation_name":"regulates","term_name":"mismatch repair","termid":"GO:0006298"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0006259"},{"rel_name":"regulates","termid":"GO:0006281"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006259","GO:0006281","GO:0008150"],"is_obsolete":false,"name":"regulation of mismatch repair","termid":"GO:0032423"}


id: GO:0003323
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of a type B pancreatic cell over time, from its formation to the mature structure. A type B pancreatic cell is a cell located towards center of the islets of Langerhans that secretes insulin.","definition_xrefs":["CL:0000169","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"glandular epithelial cell development","termid":"GO:0002068"},{"relation_name":"part_of","term_name":"type B pancreatic cell differentiation","termid":"GO:0003309"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"type B pancreatic cell development","synonyms":[{"name":"pancreatic B cell development","type":"exact"},{"name":"pancreatic beta cell development","type":"exact"}],"termid":"GO:0003323"}


id: PBO:0046450
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"epiplakin 1","termid":"PBO:0046450"}


id: PBO:0003512
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"WD repeat protein, human WDR6 family, implicated in cell cycle","termid":"PBO:0003512"}


id: GO:0086039
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"A calcium-transporting P-type ATPase activity involved in regulation of the plasma membrane potential.","definition_xrefs":["GOC:mtg_cardiac_conduct_nov11","GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"P-type calcium transporter activity","termid":"GO:0005388"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0022857"}],"interesting_parent_ids":["GO:0022857","GO:0005215","GO:0003674"],"is_obsolete":false,"name":"P-type calcium transporter activity involved in regulation of cardiac muscle cell membrane potential","synonyms":[{"name":"calcium-transporting ATPase activity involved in regulation of cardiac muscle cell membrane potential","type":"exact"}],"termid":"GO:0086039"}


id: GO:0047039
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: NADP+ + scytalone = NADPH + H+ + 1,3,6,8-naphthalenetetrol.","definition_xrefs":["EC:1.1.1.252","MetaCyc:1.1.1.252-RXN"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor","termid":"GO:0016616"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016491","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"tetrahydroxynaphthalene reductase activity","secondary_identifiers":["RHEA:21908"],"synonyms":[{"name":"T4HN reductase activity","type":"related"},{"name":"scytalone:NADP+ delta5-oxidoreductase activity","type":"related"}],"termid":"GO:0047039"}


id: GO:0100055
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any transcription from RNA polymerase II promoter process that positively regulates phosphatidylserine biosynthetic process.","definition_xrefs":["GOC:cjm","GOC:obol"],"gene_count":0,"genotype_count":0,"name":"obsolete positive regulation of phosphatidylserine biosynthetic process by transcription from RNA polymerase II promoter (obsolete GO:0100055)","termid":"GO:0100055"}


id: PBO:0070510
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L6 pseudogene 9","termid":"PBO:0070510"}


id: GO:0090318
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the rate, frequency, or extent of chylomicron remodeling. Chylomicron remodeling is the acquisition, loss or modification of a protein or lipid within a chylomicron, including the hydrolysis of triglyceride by lipoprotein lipase and the subsequent loss of free fatty acid.","definition_xrefs":["GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of cellular component organization","termid":"GO:0051128"},{"relation_name":"is_a","term_name":"regulation of multicellular organismal process","termid":"GO:0051239"},{"relation_name":"regulates","term_name":"chylomicron remodeling","termid":"GO:0034371"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of chylomicron remodeling","synonyms":[{"name":"regulation of chylomicron remodelling","type":"exact"}],"termid":"GO:0090318"}


id: FYPO:0002939
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which an RNA catabolic process that degrades mRNA encoded in the nucleus is normal (i.e. indistinguishable from wild type).","definition_xrefs":["PomBase:mah","GO:0000956"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal metabolic process during vegetative growth","termid":"FYPO:0000859"},{"relation_name":"is_a","term_name":"normal RNA metabolic process","termid":"FYPO:0004850"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001312"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0001312","FYPO:0000002","FYPO:0000257"],"is_obsolete":false,"name":"normal nuclear mRNA catabolic process","synonyms":[{"name":"normal nuclear mRNA breakdown","type":"exact"},{"name":"normal nuclear mRNA catabolic process during mitotic cell cycle","type":"related"},{"name":"normal nuclear mRNA catabolic process during vegetative growth","type":"exact"},{"name":"normal nuclear mRNA catabolism","type":"exact"},{"name":"normal nuclear mRNA degradation","type":"exact"},{"name":"normal nuclear-transcribed mRNA catabolic process","type":"exact"}],"termid":"FYPO:0002939"}


id: GO:0005106
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. A class of proteins that interact with the ephrin receptors.","definition_xrefs":["GOC:ai","ISBN:0198506732"],"gene_count":0,"genotype_count":0,"name":"obsolete ephrin (obsolete GO:0005106)","synonyms":[{"name":"ephrin","type":"exact"}],"termid":"GO:0005106"}


id: GO:0010545
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Binds to and modulates the activity of the molecular chaperone Hsp90.","definition_xrefs":["PMID:11146632","GOC:dph","GOC:tb"],"gene_count":0,"genotype_count":0,"name":"obsolete Hsp90 protein regulator activity (obsolete GO:0010545)","synonyms":[{"name":"Hsp90 protein regulator activity","type":"exact"}],"termid":"GO:0010545"}


id: GO:0031611
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"OBSOLETE. The subunits of the regulatory particle that directly associate with the core complex of a proteasome located in the endoplasmic reticulum of a cell.","definition_xrefs":["GOC:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete ER proteasome regulatory particle, base subcomplex (obsolete GO:0031611)","termid":"GO:0031611"}


id: PBO:0048444
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"guanylate binding protein 7","termid":"PBO:0048444"}


id: PBO:0065377
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pregnancy specific beta-1-glycoprotein 5","termid":"PBO:0065377"}


id: PBO:0027040
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_chromatin_binding_at_mitotically_up-regulated_genes","termid":"PBO:0027040"}


id: PBO:0001658
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"WD repeat protein, human WDR24 family","termid":"PBO:0001658"}


id: FYPO:0006050
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the rate, or speed, of mitotic sister chromatid separation is normal (i.e. indistinguishable from wild type). Mitotic sister chromatid separation is the process in which sister chromatids are physically detached from each other during mitosis.","definition_xrefs":["PomBase:mah","PMID:27146110"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal mitotic sister chromatid separation","termid":"FYPO:0004301"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001312"}],"interesting_parent_ids":["FYPO:0001312","FYPO:0000257","FYPO:0000002","FYPO:0001320"],"is_obsolete":false,"name":"normal rate of mitotic sister chromatid separation","synonyms":[{"name":"normal mitotic sister chromatid separation rate","type":"exact"},{"name":"normal rate of mitotic sister chromatid separation during vegetative growth","type":"exact"},{"name":"normal rate of sister chromatid separation during mitosis","type":"exact"},{"name":"normal rate of sister chromatid separation during mitotic cell cycle","type":"related"}],"termid":"FYPO:0006050"}


id: GO:0016979
data:
  {"annotated_genes":["SJAG_01164"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[101386],"is_not":false,"summary":null,"term":"GO:0016979"}]},"cv_name":"molecular_function","definition":"Catalysis of the lipoylation of a protein in two steps: ATP + (R)-lipoate + a [lipoyl-carrier protein]-L-lysine = a [lipoyl-carrier protein]-N6-(lipoyl)lysine + AMP + diphosphate (overall reaction): (1) ATP + (R)-lipoate = lipoyl-AMP + diphosphate; (2) lipoyl-AMP + a [lipoyl-carrier protein]-L-lysine = a [lipoyl-carrier protein]-N6-(lipoyl)lysine + AMP.","definition_xrefs":["RHEA:49288","PMID:16141198","PMID:17570395"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nucleotidyltransferase activity","termid":"GO:0016779"},{"relation_name":"is_a","term_name":"ligase activity, forming carbon-nitrogen bonds","termid":"GO:0016879"},{"relation_name":"is_a","term_name":"catalytic activity, acting on a protein","termid":"GO:0140096"}],"gene_count":1,"genes_by_uniquename":{"SJAG_01164":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016779"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016874"},{"rel_name":"is_a","termid":"GO:0140096"}],"interesting_parent_ids":["GO:0140096","GO:0016740","GO:0016779","GO:0003674","GO:0016874","GO:0003824"],"is_obsolete":false,"name":"lipoate-protein ligase activity","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["GO:0102315","MetaCyc:RXN-8654","EC:6.3.1.20","MetaCyc:RXN-8655","GO:0008916","MetaCyc:RXN-13039","MetaCyc:RXN0-1141","GO:0016978"],"synonyms":[{"name":"lipoate-protein ligase A activity","type":"narrow"},{"name":"lipoate-protein ligase B activity","type":"narrow"},{"name":"lipoate-protein ligase activity (lipoylation of glycine cleavage complex)","type":"narrow"}],"termid":"GO:0016979","terms_by_termid":{"GO:0016979":null}}


id: PBO:0068004
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 5S ribosomal pseudogene 306","termid":"PBO:0068004"}


id: GO:1904656
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of sensory perception of sweet taste.","definition_xrefs":["PMID:1716172","GO_REF:0000058","GOC:TermGenie","GOC:mr"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of sensory perception","termid":"GO:0051931"},{"relation_name":"regulates","term_name":"sensory perception of sweet taste","termid":"GO:0050916"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of sensory perception of sweet taste","synonyms":[{"name":"regulation of sweet taste perception","type":"exact"}],"termid":"GO:1904656"}


id: PBO:0085248
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Peptidyl-tRNA hydrolase that releases stalled peptides from ribosomes, component of a Cdc48p-complex; involved in protein quality control; exhibits cytosolic and ER-membrane localization; contributes to ER-associated degradation (ERAD) of specific substrates at a step after their ubiquitination; translocates to mitochondria under oxidative stress and forms a complex with Cdc48p and Npl4p that is required for ubiquitin-mediated mitochondria-associated protein degradation (MAD)","termid":"PBO:0085248"}


id: GO:0047192
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 1-alkyl-sn-glycero-3-phosphocholine + acetyl-CoA = 1-alkyl-2-acetyl-sn-glycero-3-phosphocholine + CoA.","definition_xrefs":["MetaCyc:2.3.1.67-RXN","EC:2.3.1.67"],"direct_ancestors":[{"relation_name":"is_a","term_name":"O-acetyltransferase activity","termid":"GO:0016413"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016746"},{"rel_name":"is_a","termid":"GO:0016740"}],"interesting_parent_ids":["GO:0016740","GO:0003674","GO:0003824","GO:0016746"],"is_obsolete":false,"name":"1-alkylglycerophosphocholine O-acetyltransferase activity","secondary_identifiers":["RHEA:18461"],"synonyms":[{"name":"1-alkyl-2-lyso-sn-glycero-3-phosphocholine acetyltransferase activity","type":"related"},{"name":"1-alkyl-2-lysolecithin acetyltransferase activity","type":"related"},{"name":"acetyl-CoA:1-alkyl-2-lyso-sn-glycero-3-phosphocholine 2-O-acetyltransferase activity","type":"related"},{"name":"acetyl-CoA:1-alkyl-sn-glycero-3-phosphocholine 2-O-acetyltransferase activity","type":"related"},{"name":"acetyl-CoA:lyso-PAF acetyltransferase activity","type":"related"},{"name":"acyl-CoA:1-alkyl-sn-glycero-3-phosphocholine acyltransferase activity","type":"related"},{"name":"blood platelet-activating factor acetyltransferase activity","type":"broad"},{"name":"lyso-GPC:acetyl CoA acetyltransferase activity","type":"broad"},{"name":"lyso-platelet activating factor:acetyl-CoA acetyltransferase activity","type":"broad"},{"name":"lyso-platelet-activating factor:acetyl-CoA acetyltransferase activity","type":"broad"},{"name":"lysopaf:acetyl CoA acetyltransferase activity","type":"broad"},{"name":"platelet-activating factor acylhydrolase activity","type":"broad"},{"name":"platelet-activating factor-synthesizing enzyme activity","type":"broad"}],"termid":"GO:0047192"}


id: PBO:0027272
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_phosphorylation_of_RNA_polymerase_II_C-terminal_domain_serine_2_residues_during_vegetative_growth","termid":"PBO:0027272"}


id: GO:0016914
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A gonadotrophic glycoprotein hormone secreted, in mammals, by the anterior pituitary gland; consists of alpha and beta subunits, the latter of which confers hormonal specificity.","definition_xrefs":["ISBN:0198547684"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pituitary gonadotropin complex","termid":"GO:0061696"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0005576"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005576","GO:0005575","GO:0032991"],"is_obsolete":false,"name":"follicle-stimulating hormone complex","synonyms":[{"name":"FSH complex","type":"exact"},{"name":"follicle stimulating hormone complex","type":"exact"}],"termid":"GO:0016914"}


id: GO:0072739
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an anisomycin stimulus.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to organonitrogen compound","termid":"GO:0010243"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"response to anisomycin","termid":"GO:0072739"}


id: FYPO:0000580
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which ascospore wall biogenesis is abnormal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal sporulation","termid":"FYPO:0000121"},{"relation_name":"is_a","term_name":"abnormal cell wall biogenesis","termid":"FYPO:0000174"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0000121"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0000121","FYPO:0000002","FYPO:0001985","FYPO:0000631"],"is_obsolete":false,"name":"abnormal ascospore wall biogenesis","synonyms":[{"name":"abnormal ascospore wall organization","type":"related"},{"name":"abnormal spore wall formation","type":"related"},{"name":"abnormal spore wall organization","type":"related"},{"name":"spore wall formation: abnormal","type":"related"}],"termid":"FYPO:0000580"}


id: GO:0098763
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"One of the distinct periods or stages into which the mitotic cell cycle is divided. Each phase is characterized by the occurrence of specific biochemical and morphological events.","definition_xrefs":["GOC:dos"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell cycle phase","termid":"GO:0022403"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"mitotic cell cycle phase","termid":"GO:0098763"}


id: PBO:0067633
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 806, pseudogene","termid":"PBO:0067633"}


id: PBO:0054475
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1875","termid":"PBO:0054475"}


id: PBO:0077152
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TLC domain containing 3A","termid":"PBO:0077152"}


id: PBO:0084783
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Mitochondrial phosphate carrier; imports inorganic phosphate into mitochondria; functionally redundant with Pic2p but more abundant than Pic2p under normal conditions; phosphorylated","termid":"PBO:0084783"}


id: PBO:0078121
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"T cell receptor alpha variable 8-3","termid":"PBO:0078121"}


id: PBO:0042506
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cadherin 26","termid":"PBO:0042506"}


id: MOD:01109
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"modification from DeltaMass","definition_xrefs":["DeltaMass:0"],"direct_ancestors":[{"relation_name":"is_a","term_name":"reagent derivatized residue","termid":"MOD:00848"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"9-fluorenylmethyloxycarbonyl (Fmoc)","termid":"MOD:01109"}


id: GO:0016070
data:
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id: GO:0035674
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id: GO:0005001
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id: FYECO:0000044
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id: PBO:0003684
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id: FYPO:0001519
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id: GO:1905418
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id: PBO:0059530
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id: GO:0019311
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id: GO:0050325
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id: PBO:0071734
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id: GO:0015606
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