# terms

id: PBO:0087954
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Translation termination factor eRF3; has a role in mRNA deadenylation and decay; altered protein conformation creates the [PSI(+)] prion that modifies cellular fitness, alters translational fidelity by affecting reading frame selection, and results in a nonsense suppressor phenotype; many stress-response genes are repressed in the presence of [PSI(+)]","termid":"PBO:0087954"}


id: PBO:0047215
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"family with sequence similarity 223 member A","termid":"PBO:0047215"}


id: PR:O74388
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- far10 gene.","definition_xrefs":["UniProtKB:O74388","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized protein C3H7.13 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC3H7.13","synonyms":[{"name":"Spom972h-far10","type":"exact"}],"termid":"PR:O74388"}


id: PBO:0087390
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Steryl ester hydrolase; one of three gene products (Yeh1p, Yeh2p, Tgl1p) responsible for steryl ester hydrolase activity and involved in sterol homeostasis; localized to lipid particle membranes","termid":"PBO:0087390"}


id: PBO:0079328
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"testis-specific transcript, Y-linked 16","termid":"PBO:0079328"}


id: PBO:0072049
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein S10 pseudogene 19","termid":"PBO:0072049"}


id: MOD:00939
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"modification from Unimod Chemical derivative","definition_xrefs":["Unimod:500"],"direct_ancestors":[{"relation_name":"is_a","term_name":"reagent derivatized residue","termid":"MOD:00848"},{"relation_name":"is_a","term_name":"modified L-cysteine residue","termid":"MOD:00905"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"hydrolyzed N-methylmaleimide cysteine adduct","synonyms":[{"name":"Nmethylmaleimide+water","type":"related"},{"name":"Nmethylmaleimidehydrolysis","type":"related"}],"termid":"MOD:00939"}


id: GO:0047215
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: (indol-3-yl)acetate + UDP-D-glucose = 1-O-(indol-3-ylacetyl)-beta-D-glucose + UDP.","definition_xrefs":["EC:2.4.1.121","RHEA:14921"],"direct_ancestors":[{"relation_name":"is_a","term_name":"UDP-glucosyltransferase activity","termid":"GO:0035251"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016757"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016757","GO:0003674","GO:0003824","GO:0016740"],"is_obsolete":false,"name":"indole-3-acetate beta-glucosyltransferase activity","secondary_identifiers":["MetaCyc:2.4.1.121-RXN","KEGG_REACTION:R03094"],"synonyms":[{"name":"IAA-Glu synthetase activity","type":"related"},{"name":"IAA-glucose synthase activity","type":"related"},{"name":"IAGlu synthase activity","type":"related"},{"name":"UDP-glucose:(indol-3-yl)acetate beta-D-glucosyltransferase activity","type":"related"},{"name":"UDP-glucose:auxin glucosyltransferase activity","type":"broad"},{"name":"UDP-glucose:indol-3-acetic acid glucosyltransferase activity","type":"exact"},{"name":"UDP-glucose:indol-3-ylacetate glucosyl-transferase activity","type":"related"},{"name":"UDP-glucose:indol-3-ylacetate glucosyltransferase activity","type":"related"},{"name":"UDPG-indol-3-ylacetyl glucosyl transferase activity","type":"related"},{"name":"UDPglucose:indole-3-acetate beta-D-glucosyltransferase activity","type":"related"},{"name":"indol-3-ylacetylglucose synthase activity","type":"related"},{"name":"uridine diphosphoglucose-indoleacetate glucosyltransferase activity","type":"related"}],"termid":"GO:0047215"}


id: PBO:0011421
data:
  {"annotation_feature_type":"gene","cv_name":"warning","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"may not be protein coding","termid":"PBO:0011421"}


id: GO:0035794
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that increases the frequency, rate or extent of the passage or uptake of molecules by the mitochondrial membrane.","definition_xrefs":["GOC:bf","PMID:12546810"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of mitochondrial membrane permeability","termid":"GO:0046902"},{"relation_name":"is_a","term_name":"positive regulation of membrane permeability","termid":"GO:1905710"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0061024"},{"rel_name":"is_a","termid":"GO:0007005"}],"interesting_parent_ids":["GO:0008150","GO:0061024","GO:0007005","GO:0006810"],"is_obsolete":false,"name":"positive regulation of mitochondrial membrane permeability","synonyms":[{"name":"MPT","type":"narrow"},{"name":"mitochondrial membrane permeability transition","type":"narrow"},{"name":"mitochondrial membrane permeabilization","type":"narrow"},{"name":"mitochondrial permeability transition","type":"narrow"},{"name":"positive regulation of transport across mitochondrial membrane","type":"exact"}],"termid":"GO:0035794"}


id: PBO:0058047
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 4268","termid":"PBO:0058047"}


id: PBO:0028156
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_cellular_doxorubicin_level","termid":"PBO:0028156"}


id: GO:0060079
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process that leads to a temporary increase in postsynaptic potential due to the flow of positively charged ions into the postsynaptic cell. The flow of ions that causes an EPSP is an excitatory postsynaptic current (EPSC) and makes it easier for the neuron to fire an action potential.","definition_xrefs":["GOC:ef","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of postsynaptic membrane potential","termid":"GO:0060078"},{"relation_name":"part_of","term_name":"chemical synaptic transmission, postsynaptic","termid":"GO:0099565"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"excitatory postsynaptic potential","synonyms":[{"name":"regulation of EPSP","type":"related"},{"name":"regulation of excitatory post-synaptic membrane potential","type":"exact"}],"termid":"GO:0060079"}


id: PBO:0072843
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"suppressor APC domain containing 1","termid":"PBO:0072843"}


id: SO:0000237
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"An attribute describing a transcript.","direct_ancestors":[{"relation_name":"is_a","term_name":"feature_attribute","termid":"SO:0000733"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transcript_attribute","synonyms":[{"name":"transcript attribute","type":"exact"}],"termid":"SO:0000237"}


id: PBO:0088789
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Rheb GAP, hamartin Tsc1","termid":"PBO:0088789"}


id: PBO:0069473
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 740, pseudogene","termid":"PBO:0069473"}


id: PBO:0071937
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein S4X pseudogene 14","termid":"PBO:0071937"}


id: GO:0018949
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving m-xylene, (1,3-dimethylbenzene) a colorless, liquid aromatic hydrocarbon.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"xylene metabolic process","termid":"GO:0018948"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"m-xylene metabolic process","secondary_identifiers":["UM-BBD_pathwayID:mxy"],"synonyms":[{"name":"m-xylene metabolism","type":"exact"},{"name":"meta-xylene metabolic process","type":"exact"},{"name":"meta-xylene metabolism","type":"exact"}],"termid":"GO:0018949"}


id: PBO:0044158
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CTD small phosphatase like","termid":"PBO:0044158"}


id: GO:0007075
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that increases the frequency, rate or extent of transcription from an RNA polymerase III promoter as the cell leaves M phase. M phase is the part of the mitotic cell cycle during which mitosis and cytokinesis take place.","definition_xrefs":["GOC:tb","GOC:dph"],"gene_count":0,"genotype_count":0,"name":"obsolete positive regulation of transcription involved in exit from mitosis, from RNA polymerase III promoter (obsolete GO:0007075)","synonyms":[{"name":"activation of transcription on exit from mitosis, from Pol III promoter","type":"narrow"},{"name":"activation of transcription on exit from mitosis, from RNA polymerase III promoter","type":"narrow"}],"termid":"GO:0007075"}


id: GO:0072682
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The migration of an eosinophil from the blood vessels into the surrounding tissue.","definition_xrefs":["GOC:BHF","GOC:mah","CL:0000771"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular extravasation","termid":"GO:0045123"},{"relation_name":"is_a","term_name":"eosinophil migration","termid":"GO:0072677"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"eosinophil extravasation","termid":"GO:0072682"}


id: FYPO:0003434
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which the observed rate of ornithine carbamoyltransferase activity is decreased.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased catalytic activity","termid":"FYPO:0000663"},{"relation_name":"is_a","term_name":"abnormal ornithine carbamoyltransferase activity","termid":"FYPO:0003433"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000707"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000654"},{"rel_name":"is_a","termid":"FYPO:0000661"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0000707","FYPO:0000661","FYPO:0005447","FYPO:0000654","FYPO:0000652","FYPO:0001985","FYPO:0000002"],"is_obsolete":false,"name":"decreased ornithine carbamoyltransferase activity","synonyms":[{"name":"reduced ornithine carbamoyltransferase activity","type":"exact"}],"termid":"FYPO:0003434"}


id: GO:0035931
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The regulated release of any mineralocorticoid into the circulatory system. Mineralocorticoids are a class of steroid hormones that regulate water and electrolyte metabolism.","definition_xrefs":["GOC:sl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"corticosteroid hormone secretion","termid":"GO:0035930"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0051179"}],"interesting_parent_ids":["GO:0023052","GO:0006810","GO:0008150","GO:0051179"],"is_obsolete":false,"name":"mineralocorticoid secretion","termid":"GO:0035931"}


id: PBO:0038759
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ACTR3B pseudogene 4","termid":"PBO:0038759"}


id: PBO:0030245
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-resistance_to_ethanol","termid":"PBO:0030245"}


id: GO:0018877
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving beta-1,2,3,4,5,6-hexachlorocyclohexane, a halogenated organic insecticide that has been used worldwide for agriculture and public health.","definition_xrefs":["UM-BBD_pathwayID:hch"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hexachlorocyclohexane metabolic process","termid":"GO:0019497"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"beta-1,2,3,4,5,6-hexachlorocyclohexane metabolic process","synonyms":[{"name":"beta-1,2,3,4,5,6-hexachlorocyclohexane metabolism","type":"exact"}],"termid":"GO:0018877"}


id: GO:0061582
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The orderly movement of an intestinal epithelial cell from one site to another, often during the development of a multicellular organism.","definition_xrefs":["GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"epithelial cell migration","termid":"GO:0010631"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"intestinal epithelial cell migration","termid":"GO:0061582"}


id: PBO:0112001
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"alpha-1,2-mannosyltransferase Omh2","termid":"PBO:0112001"}


id: PBO:0034546
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_cellular_phosphatidic_acid_level","termid":"PBO:0034546"}


id: PBO:0071742
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L39 pseudogene 40","termid":"PBO:0071742"}


id: PBO:0046987
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"family with sequence similarity 86 member L, pseudogene","termid":"PBO:0046987"}


id: PBO:0028066
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_cellular_mtDNA_level","termid":"PBO:0028066"}


id: PBO:0029675
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-inviable_elongated_multinucleate_aseptate_vegetative_cell","termid":"PBO:0029675"}


id: GO:0044319
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The migration of a cell along or through a wound gap that contributes to the reestablishment of a continuous surface.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell migration","termid":"GO:0016477"},{"relation_name":"part_of","term_name":"epiboly involved in wound healing","termid":"GO:0090505"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"wound healing, spreading of cells","synonyms":[{"name":"cell migration involved in wound healing epiboly","type":"exact"}],"termid":"GO:0044319"}


id: PBO:0055368
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2797","termid":"PBO:0055368"}


id: PBO:0091209
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-Tyr","termid":"PBO:0091209"}


id: PBO:0003297
data:
  {"annotation_feature_type":"gene","cv_name":"disease_associated","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"hereditary spastic paraplegia","termid":"PBO:0003297"}


id: GO:0035303
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of removal of phosphate groups from a molecule.","definition_xrefs":["GOC:bf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of phosphate metabolic process","termid":"GO:0019220"},{"relation_name":"regulates","term_name":"dephosphorylation","termid":"GO:0016311"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of dephosphorylation","termid":"GO:0035303"}


id: GO:0018558
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 5,6-dihydroxy-3-methyl-2-oxo-1,2-dihydroquinoline + O2 = 3-methyl-5-hydroxy-6-(3-carboxy-3-oxopropenyl)-1H-2-pyridon.","definition_xrefs":["UM-BBD_reactionID:r0049"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen","termid":"GO:0016702"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016491"],"is_obsolete":false,"name":"5,6-dihydroxy-3-methyl-2-oxo-1,2-dihydroquinoline dioxygenase activity","secondary_identifiers":["EC:1.13.11.-"],"termid":"GO:0018558"}


id: PBO:0083102
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DNA helicase and DNA-dependent ATPase; role in DNA repair and checkpoint recovery, in the proper timing of commitment to meiotic recombination and the Meiosis I to II transition; blocks trinucleotide repeat expansion; affects genome stability; disassembles Rad51p nucleoprotein filaments during meiotic recombination; stimulates Mus81p-Mms4p endonuclease activity independent of catalytic activity; ATPase and ssDNA translocating motor activities inhibited by Dmc1p; functional homolog of human RTEL1","termid":"PBO:0083102"}


id: GO:0039550
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process in which a virus stops, prevents, or reduces IRF3-dependent gene transcription, by preventing or reducing IRF3 binding to promoter sites.","definition_xrefs":["PMID:21632562"],"gene_count":0,"genotype_count":0,"name":"obsolete suppression by virus of host IRF3 activity by inhibition of DNA binding (obsolete GO:0039550)","synonyms":[{"name":"inhibition by virus of host IRF3-DNA binding","type":"exact"}],"termid":"GO:0039550"}


id: PBO:0027106
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_termination_of_RNA_polymerase_II_transcription","termid":"PBO:0027106"}


id: FYPO:0006517
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A physical cellular phenotype in which chromosome structure is normal (i.e. indistinguishable from wild type) at the telomeric regions during G0 phase. Telomere structure refers to the position, shape, arrangement and connectivity of DNA and associated proteins in the telomeric region.","definition_xrefs":["PMID:29167439","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal telomere structure","termid":"FYPO:0006514"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0000257"],"is_obsolete":false,"name":"normal telomere structure during G0","synonyms":[{"name":"normal chromosome structure at telomere during G0","type":"exact"},{"name":"normal chromosome structure at telomeric region during G0","type":"exact"},{"name":"normal telomere structure during cell quiescence","type":"exact"},{"name":"normal telomere structure during quiescence","type":"exact"},{"name":"normal telomeric region structure during G0","type":"exact"}],"termid":"FYPO:0006517"}


id: PBO:0086023
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein of unknown function; the YKL050W protein is a target of the SCFCdc4 ubiquitin ligase complex and YKL050W transcription is regulated by Azf1p; YKL050C has a paralog, EIS1, that arose from the whole genome duplication","termid":"PBO:0086023"}


id: PBO:0029095
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_cysteine_synthase_activity","termid":"PBO:0029095"}


id: PBO:0088682
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TRAPP III complex subunit Trs85b","termid":"PBO:0088682"}


id: GO:0022618
data:
  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id: PBO:0056773
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id: GO:0045997
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id: GO:0070779
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id: PBO:0003559
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id: PR:Q9UTA6
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id: PBO:0045043
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id: SO:0001511
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id: PBO:0001532
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id: PBO:0052531
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id: PR:O60147
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id: GO:0000049
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id: GO:0120222
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id: GO:0060972
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id: PBO:0055320
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id: PR:O94479
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPCC1919.12c gene.","definition_xrefs":["PRO:DNx","UniProtKB:O94479"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"vacuolar membrane protease (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC1919.12c","synonyms":[{"name":"FXNA-related family protease 1 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-SPCC1919.12c","type":"exact"}],"termid":"PR:O94479"}


id: GO:0019652
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The anaerobic enzymatic conversion of lactate to propionate, concomitant with the oxidation of lactate to acetate and CO2 and yielding energy in the form of adenosine triphosphate (ATP).","definition_xrefs":["MetaCyc:PROPFERM-PWY","GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"propionate metabolic process","termid":"GO:0019541"},{"relation_name":"is_a","term_name":"non-glycolytic fermentation","termid":"GO:0019662"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006091"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0006629"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0006629","GO:0006091","GO:0044281"],"is_obsolete":false,"name":"lactate fermentation to propionate and acetate","synonyms":[{"name":"acrylate pathway","type":"exact"},{"name":"nonrandomizing pathway","type":"exact"},{"name":"propionate fermentation","type":"exact"}],"termid":"GO:0019652"}


id: PBO:0000421
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial iron-sulfur cluster assembly scaffold protein Isu1","termid":"PBO:0000421"}


id: PBO:0084832
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Mitochondrial protein that controls mitochondrial gene expression; binds the dodecamer element in mitochondrial mRNAs, facilitates processing and delivery of mitochondrial mRNAs to ribosomes; located on matrix face of the inner membrane and loosely associated with mitoribosomes; RMD9 has a paralog, YBR238C, that arose from the whole genome duplication","termid":"PBO:0084832"}


id: GO:0047943
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: L-glutamate + ATP + methylammonium = N(5)-methyl-L-glutamine + ADP + 2 H+ + phosphate.","definition_xrefs":["RHEA:17117","EC:6.3.4.12"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ligase activity, forming carbon-nitrogen bonds","termid":"GO:0016879"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016874"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016874"],"is_obsolete":false,"name":"glutamate-methylamine ligase activity","secondary_identifiers":["MetaCyc:GLUTAMATE--METHYLAMINE-LIGASE-RXN","KEGG_REACTION:R01585"],"synonyms":[{"name":"L-glutamate:methylamine ligase (ADP-forming)","type":"related"},{"name":"gamma-glutamylmethylamide synthetase activity","type":"related"}],"termid":"GO:0047943"}


id: PBO:0053386
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 313","termid":"PBO:0053386"}


id: GO:0060180
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The specific behavior of a female organism that is associated with reproduction.","definition_xrefs":["GOC:dph","GOC:pr","GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mating behavior","termid":"GO:0007617"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"female mating behavior","termid":"GO:0060180"}


id: PomGeneEx:0000008
data:
  {"annotation_feature_type":"gene","cv_name":"PomGeneEx","definition":"A gene expression qualifier that indicates that an RNA or protein is present at levels, or produced at rates, that vary under two or more sets of conditions or over a time course.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"gene expression qualifier","termid":"PomGeneEx:0000001"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"fluctuates","synonyms":[{"name":"gene expression fluctuates","type":"exact"},{"name":"gene product level fluctuates","type":"exact"}],"termid":"PomGeneEx:0000008"}


id: GO:0042043
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a neurexin, a synaptic cell surface protein related to latrotoxin receptor, laminin and agrin. Neurexins act as cell recognition molecules at nerve terminals.","definition_xrefs":["PMID:18923512","GOC:curators","GOC:pr"],"direct_ancestors":[{"relation_name":"is_a","term_name":"signaling receptor binding","termid":"GO:0005102"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005515"},{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0005488","GO:0005515","GO:0003674"],"is_obsolete":false,"name":"neurexin family protein binding","secondary_identifiers":["GO:0019963"],"synonyms":[{"name":"neuroligin","type":"related"}],"termid":"GO:0042043"}


id: PBO:0063897
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"phosphatidylinositol glycan anchor biosynthesis class U","termid":"PBO:0063897"}


id: PBO:0087304
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Ski complex component and putative RNA helicase; mediates 3'-5' RNA degradation by the cytoplasmic exosome; null mutants have superkiller phenotype of increased viral dsRNAs and are synthetic lethal with mutations in 5'-3' mRNA decay; mutations in the human ortholog, SKIV2L, causes Syndromic diarrhea/Trichohepatoenteric (SD/THE) syndrome","termid":"PBO:0087304"}


id: PBO:0039347
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ameloblastin","termid":"PBO:0039347"}


id: PBO:0062625
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 11 subfamily H member 2","termid":"PBO:0062625"}


id: GO:0060982
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which the anatomical structures of coronary arteries are generated and organized. Coronary arteries are blood vessels that transport blood to the heart muscle.","definition_xrefs":["GOC:mtg_heart"],"direct_ancestors":[{"relation_name":"is_a","term_name":"artery morphogenesis","termid":"GO:0048844"},{"relation_name":"is_a","term_name":"coronary vasculature morphogenesis","termid":"GO:0060977"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"coronary artery morphogenesis","termid":"GO:0060982"}


id: PBO:0074095
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SLC26A9 and RAB7B antisense RNA 1","termid":"PBO:0074095"}


id: PBO:0027919
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-sensitive_to_papuamide_B_during_vegetative_growth","termid":"PBO:0027919"}


id: GO:0031741
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a type B gastrin/cholecystokinin receptor.","definition_xrefs":["GOC:mah","GOC:nln"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cholecystokinin receptor binding","termid":"GO:0031739"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005515"},{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0005488","GO:0003674","GO:0005515"],"is_obsolete":false,"name":"type B gastrin/cholecystokinin receptor binding","synonyms":[{"name":"type B gastrin/cholecystokinin receptor ligand","type":"narrow"}],"termid":"GO:0031741"}


id: GO:0035283
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Division of the central nervous system into a series of semi-repetitive parts or segments.","definition_xrefs":["GOC:bf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"segmentation","termid":"GO:0035282"},{"relation_name":"part_of","term_name":"central nervous system development","termid":"GO:0007417"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"central nervous system segmentation","termid":"GO:0035283"}


id: PR:Q09179
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A glutamine synthetase that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO00645","PRO:DNx","PANTHER:PTHR20852:SF14"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glutamine synthetase (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC23H4.06","secondary_identifiers":["UniProtKB:Q09179"],"synonyms":[{"name":"GS (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-GLUL","type":"exact"},{"name":"glutamate--ammonia ligase (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:Q09179"}


id: PBO:0013470
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"double strand break localizing protein Dbl6","termid":"PBO:0013470"}


id: GO:0072570
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to ADP-D-ribose, an ADP-aldose having ribose as the aldose fragment.","definition_xrefs":["GOC:mah","GOC:sart","PMID:20088964"],"direct_ancestors":[{"relation_name":"is_a","term_name":"anion binding","termid":"GO:0043168"},{"relation_name":"is_a","term_name":"organic cyclic compound binding","termid":"GO:0097159"},{"relation_name":"is_a","term_name":"carbohydrate derivative binding","termid":"GO:0097367"},{"relation_name":"is_a","term_name":"heterocyclic compound binding","termid":"GO:1901363"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005488"}],"interesting_parent_ids":["GO:0003674","GO:0005488"],"is_obsolete":false,"name":"ADP-D-ribose binding","synonyms":[{"name":"ADP-ribose binding","type":"broad"}],"termid":"GO:0072570"}


id: PBO:0053209
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"galectin 8","termid":"PBO:0053209"}


id: PBO:0076593
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TBC1 domain family member 14","termid":"PBO:0076593"}


id: PBO:0077334
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transmembrane protein 71","termid":"PBO:0077334"}


id: PR:Q9Y802
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- lsd1 gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q9Y802"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"lysine-specific histone demethylase 1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC146.09c","synonyms":[{"name":"Spom972h-lsd1","type":"exact"}],"termid":"PR:Q9Y802"}


id: PBO:0089807
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"inosine-containing RNA endoribonuclease","termid":"PBO:0089807"}


id: PR:Q8TFF9
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- fah1 gene.","definition_xrefs":["UniProtKB:Q8TFF9","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"amidase PB8B6.03 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBPB8B6.03","synonyms":[{"name":"Spom972h-fah1","type":"exact"}],"termid":"PR:Q8TFF9"}


id: FYPO:0002659
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of trehalose 6-phosphate measured in a cell is higher than normal when the cell is subject to heat shock.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased cellular trehalose 6-phosphate level","termid":"FYPO:0002658"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0000002","FYPO:0001985"],"is_obsolete":false,"name":"increased cellular trehalose 6-phosphate level during heat shock","synonyms":[{"name":"increased cellular trehalose 6-phosphate level during heat shock during mitotic cell cycle","type":"related"},{"name":"increased cellular trehalose 6-phosphate level during vegetative growth and during heat shock","type":"exact"},{"name":"increased cellular trehalose-6P level during heat shock","type":"exact"},{"name":"increased trehalose 6-phosphate accumulation during heat shock","type":"related"}],"termid":"FYPO:0002659"}


id: GO:0032993
data:
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id: PBO:0087700
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id: PBO:0075980
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id: PBO:0040564
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id: FYPO:0003572
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id: GO:0015967
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id: PBO:0109013
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id: GO:0036463
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id: SO:0001348
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id: PBO:0001780
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id: GO:0035493
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id: GO:0070207
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id: GO:0002542
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id: PBO:0006204
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id: SO:0002187
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id: PBO:0001357
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id: GO:1904070
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of ascaroside.","definition_xrefs":["GOC:kmv","GOC:TermGenie","GO_REF:0000068","PMID:25775534"],"direct_ancestors":[{"relation_name":"is_a","term_name":"glycoside biosynthetic process","termid":"GO:0016138"},{"relation_name":"is_a","term_name":"ascaroside metabolic process","termid":"GO:1904069"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"ascaroside biosynthetic process","synonyms":[{"name":"ascaroside anabolism","type":"exact"},{"name":"ascaroside biosynthesis","type":"exact"},{"name":"ascaroside formation","type":"exact"},{"name":"ascaroside synthesis","type":"exact"}],"termid":"GO:1904070"}


id: GO:0086076
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"A wide pore channel activity that enables a direct cytoplasmic connection from an atrial cardiomyocyte to an AV node cell. The gap junction passes electrical signals between the cells contributing to cardiac conduction.","definition_xrefs":["GOC:mtg_cardiac_conduct_nov11","GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"gap junction channel activity involved in cardiac conduction electrical coupling","termid":"GO:0086075"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005215"}],"interesting_parent_ids":["GO:0003674","GO:0005215","GO:0022857"],"is_obsolete":false,"name":"gap junction channel activity involved in atrial cardiac muscle cell-AV node cell electrical coupling","synonyms":[{"name":"gap junction channel activity involved in atrial cardiomyocyte-AV node cell electrical coupling","type":"related"},{"name":"gap junction channel activity involved in atrial cardiomyocyte-atrioventricular node cell electrical coupling","type":"exact"}],"termid":"GO:0086076"}


id: PBO:0070653
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L7 pseudogene 24","termid":"PBO:0070653"}


id: GO:0047748
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 5-beta-cholestane-3-alpha,7-alpha,12-alpha,26-tetraol + NAD+ = 3-alpha,7-alpha,12-alpha-trihydroxy-5-beta-cholestan-26-al + NADH.","definition_xrefs":["RHEA:34631"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor","termid":"GO:0016616"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0016491","GO:0003824"],"is_obsolete":false,"name":"cholestanetetraol 26-dehydrogenase activity","secondary_identifiers":["MetaCyc:CHOLESTANETETRAOL-26-DEHYDROGENASE-RXN"],"synonyms":[{"name":"5beta-cholestane-3alpha,7alpha,12alpha,26-tetraol:NAD+ 26-oxidoreductase activity","type":"exact"},{"name":"5beta-cholestane-3alpha,7alpha,12alpha,26-tetrol dehydrogenase activity","type":"exact"},{"name":"TEHC-NAD oxidoreductase activity","type":"exact"},{"name":"cholestanetetrol 26-dehydrogenase activity","type":"exact"}],"termid":"GO:0047748"}


id: FYPO:0008133
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of phosphatidylinositol-4-phosphate measured in a cell is lower than normal in the Golgi.","definition_xrefs":["PMID:37815455"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased cellular phosphatidylinositol-4-phosphate level","termid":"FYPO:0006775"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001985","FYPO:0001320"],"is_obsolete":false,"name":"decreased phosphatidylinositol-4-phosphate level in the Golgi","termid":"FYPO:0008133"}


id: PBO:0075885
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ST6GAL2 intronic transcript 1","termid":"PBO:0075885"}


id: PBO:0091507
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"3-hydroxyacyl-CoA dehydrogenase","termid":"PBO:0091507"}


id: FYPO:0001720
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A phenotype in which a specific transport process is abnormal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"transport phenotype","termid":"FYPO:0000149"},{"relation_name":"is_a","term_name":"abnormal cellular process","termid":"FYPO:0000628"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000138"}],"interesting_parent_ids":["FYPO:0000138","FYPO:0001985","FYPO:0005447","FYPO:0000002"],"is_obsolete":false,"name":"abnormal transport","termid":"FYPO:0001720"}


id: PBO:0000311
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glycerate kinase (predicted)","termid":"PBO:0000311"}


id: PBO:0048043
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"follistatin","termid":"PBO:0048043"}


id: MOD:00245
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively crosslinks a glycine residue and an L-serine residue to form glycine oxazole-4-carboxylic acid.","definition_xrefs":["PubMed:8895467","RESID:AA0240","PubMed:8183941"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxazole/oxazoline ring crosslinked residues (Ser)","termid":"MOD:01421"},{"relation_name":"is_a","term_name":"didehydrogenated residue","termid":"MOD:01888"},{"relation_name":"is_a","term_name":"crosslinked glycine residue","termid":"MOD:02047"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glycine oxazole-4-carboxylic acid","synonyms":[{"name":"2-aminomethyl-1,3-oxazole-4-carboxylic acid","type":"exact"},{"name":"2-azanylmethyl-1,3-oxazole-4-carboxylic acid","type":"exact"},{"name":"CROSSLNK Oxazole-4-carboxylic acid (Gly-Ser)","type":"exact"},{"name":"glycine oxazole-4-carboxylic acid","type":"exact"}],"termid":"MOD:00245"}


id: PBO:0058540
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 6085","termid":"PBO:0058540"}


id: PBO:0090053
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"plasma membrane LMBR1-like multi-pass membrane protein, human LMBRD2 ortholog, implicated in signalling","termid":"PBO:0090053"}


id: GO:1990454
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A type of voltage-dependent calcium channel responsible for excitation-contraction coupling of skeletal, smooth, and cardiac muscle. 'L' stands for 'long-lasting' referring to the length of activation.","definition_xrefs":["GOC:ame","PMID:12946355"],"direct_ancestors":[{"relation_name":"is_a","term_name":"voltage-gated calcium channel complex","termid":"GO:0005891"},{"relation_name":"part_of","term_name":"T-tubule","termid":"GO:0030315"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005886"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0032991","GO:0005886","GO:0005575"],"is_obsolete":false,"name":"L-type voltage-gated calcium channel complex","synonyms":[{"name":"cardiac muscle L-type voltage-gated calcium channel complex","type":"narrow"},{"name":"skeletal muscle L-type voltage-gated calcium channel complex","type":"narrow"}],"termid":"GO:1990454"}


id: PBO:0066043
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RAP1B, member of RAS oncogene family","termid":"PBO:0066043"}


id: GO:0071908
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Determination of the asymmetric location of the intestine loops with respect to the left and right halves of the organism.","definition_xrefs":["GOC:cvs"],"direct_ancestors":[{"relation_name":"is_a","term_name":"determination of digestive tract left/right asymmetry","termid":"GO:0071907"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"determination of intestine left/right asymmetry","termid":"GO:0071908"}


id: GO:0042208
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of propylene, an alkene produced by catalytic or thermal cracking of hydrocarbons or as a by-product of petroleum refining.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"propylene metabolic process","termid":"GO:0018964"},{"relation_name":"is_a","term_name":"xenobiotic catabolic process","termid":"GO:0042178"},{"relation_name":"is_a","term_name":"alkene catabolic process","termid":"GO:0043451"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044248"}],"interesting_parent_ids":["GO:0044248","GO:0008150"],"is_obsolete":false,"name":"propylene catabolic process","secondary_identifiers":["UM-BBD_pathwayID:pro"],"synonyms":[{"name":"propylene breakdown","type":"exact"},{"name":"propylene catabolism","type":"exact"},{"name":"propylene degradation","type":"exact"}],"termid":"GO:0042208"}


id: GO:2000533
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of renal albumin absorption.","definition_xrefs":["GOC:obol","GOC:yaf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of multicellular organismal process","termid":"GO:0051241"},{"relation_name":"is_a","term_name":"regulation of renal albumin absorption","termid":"GO:2000532"},{"relation_name":"negatively_regulates","term_name":"renal albumin absorption","termid":"GO:0097018"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of renal albumin absorption","termid":"GO:2000533"}


id: PBO:0025447
data:
  {"annotation_feature_type":"gene","cv_name":"disease_associated","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"urea cycle disorders","termid":"PBO:0025447"}


id: PBO:0088825
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Hrd1 ubiquitin ligase complex, CUE domain protein Cue1","termid":"PBO:0088825"}


id: PBO:0086829
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Putative protein of unknown function; YPL034W is not essential gene","termid":"PBO:0086829"}


id: PBO:0063371
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"prenylcysteine oxidase 1","termid":"PBO:0063371"}


id: GO:0090167
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process in which disassembled Golgi vesicles are localized into daughter cells upon cell division.","definition_xrefs":["GOC:ascb_2009","GOC:dph","GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Golgi organization","termid":"GO:0007030"},{"relation_name":"is_a","term_name":"Golgi localization","termid":"GO:0051645"},{"relation_name":"part_of","term_name":"Golgi inheritance","termid":"GO:0048313"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0051179"}],"interesting_parent_ids":["GO:0051179","GO:0008150"],"is_obsolete":false,"name":"Golgi distribution to daughter cells","synonyms":[{"name":"Golgi apparatus distribution to daughter cells","type":"exact"}],"termid":"GO:0090167"}


id: PR:Q10208
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A pyruvate kinase I that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pyruvate kinase (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC4H3.10c","secondary_identifiers":["UniProtKB:Q10208"],"synonyms":[{"name":"PK (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"SPAC4H3.10c","type":"related"},{"name":"Spom972h-pykF","type":"exact"}],"termid":"PR:Q10208"}


id: GO:1900673
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving olefin.","definition_xrefs":["GOC:TermGenie","GOC:mengo_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hydrocarbon metabolic process","termid":"GO:0120252"},{"relation_name":"is_a","term_name":"olefinic compound metabolic process","termid":"GO:0120254"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"olefin metabolic process","synonyms":[{"name":"olefin metabolism","type":"exact"}],"termid":"GO:1900673"}


id: GO:0102756
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: malonyl-CoA + a very-long-chain 2,3,4-saturated fatty acyl CoA = carbon dioxide + coenzyme A + a very-long-chain oxoacyl-CoA.","definition_xrefs":["GOC:pz"],"gene_count":0,"genotype_count":0,"name":"obsolete very-long-chain 3-ketoacyl-CoA synthase activity (obsolete GO:0102756)","termid":"GO:0102756"}


id: GO:0060749
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The progression of the mammary gland alveolus over time, from its formation to its mature state. The mammary gland alveolus is a sac-like structure that is found in the mature gland.","definition_xrefs":["GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"anatomical structure development","termid":"GO:0048856"},{"relation_name":"part_of","term_name":"mammary gland lobule development","termid":"GO:0061377"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"mammary gland alveolus development","termid":"GO:0060749"}


id: PBO:0054600
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2004","termid":"PBO:0054600"}


id: PR:Q09173
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- ptc3 gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q09173"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protein phosphatase 2C homolog 3 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC2G11.07c","synonyms":[{"name":"PP2C-3 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-ptc3","type":"exact"}],"termid":"PR:Q09173"}


id: PBO:0052099
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"potassium voltage-gated channel subfamily A member 2","termid":"PBO:0052099"}


id: GO:1902643
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate catabolic process.","definition_xrefs":["GO_REF:0000058","GOC:TermGenie","PMID:22562153","GOC:di"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of phospholipid catabolic process","termid":"GO:0060697"},{"relation_name":"is_a","term_name":"regulation of 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate catabolic process","termid":"GO:1902641"},{"relation_name":"positively_regulates","term_name":"1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate catabolic process","termid":"GO:1902634"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0006629"},{"rel_name":"regulates","termid":"GO:0044248"},{"rel_name":"positively_regulates","termid":"GO:0044248"},{"rel_name":"positively_regulates","termid":"GO:0006629"}],"interesting_parent_ids":["GO:0006629","GO:0044248","GO:0008150"],"is_obsolete":false,"name":"positive regulation of 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate catabolic process","synonyms":[{"name":"activation of 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate breakdown","type":"narrow"},{"name":"activation of 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate catabolic process","type":"narrow"},{"name":"activation of 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate catabolism","type":"narrow"},{"name":"activation of 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate degradation","type":"narrow"},{"name":"positive regulation of 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate breakdown","type":"exact"},{"name":"positive regulation of 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate catabolism","type":"exact"},{"name":"positive regulation of 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate degradation","type":"exact"},{"name":"up regulation of 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate breakdown","type":"exact"},{"name":"up regulation of 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate catabolic process","type":"exact"},{"name":"up regulation of 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate catabolism","type":"exact"},{"name":"up regulation of 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate degradation","type":"exact"},{"name":"up-regulation of 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate breakdown","type":"exact"},{"name":"up-regulation of 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate catabolic process","type":"exact"},{"name":"up-regulation of 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate catabolism","type":"exact"},{"name":"up-regulation of 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate degradation","type":"exact"},{"name":"upregulation of 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate breakdown","type":"exact"},{"name":"upregulation of 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate catabolic process","type":"exact"},{"name":"upregulation of 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate catabolism","type":"exact"},{"name":"upregulation of 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate degradation","type":"exact"}],"termid":"GO:1902643"}


id: GO:0102207
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: docosanoate + O2 + reduced [NADPH--hemoprotein reductase] = 22-hydroxydocosanoate + H+ + H2O + oxidized [NADPH--hemoprotein reductase].","definition_xrefs":["RHEA:40079","GOC:krc","GOC:pz"],"gene_count":0,"genotype_count":0,"name":"obsolete docosanoate omega-hydroxylase activity (obsolete GO:0102207)","synonyms":[{"name":"behenate omega-hydroxylase activity","type":"exact"}],"termid":"GO:0102207"}


id: GO:0010583
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cyclopentenone stimulus. Cyclopentenones are oxylipins derived from polyunsaturated fatty acids. They are structurally similar to jasmonic acid, but contain a reactive unsaturated carbonyl structure in the cyclo-ring. Cyclopentenones include phytoprostanes and 12-oxo-phytodienoic acid.","definition_xrefs":["PMID:18334669"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to organic cyclic compound","termid":"GO:0014070"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"response to cyclopentenone","termid":"GO:0010583"}


id: PBO:0048933
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"golgi phosphoprotein 3 like","termid":"PBO:0048933"}


id: GO:1905246
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of aspartic-type peptidase activity.","definition_xrefs":["GOC:jl","PMID:21745575","GO_REF:0000059","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of peptidase activity","termid":"GO:0010466"},{"relation_name":"is_a","term_name":"regulation of aspartic-type peptidase activity","termid":"GO:1905245"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of aspartic-type peptidase activity","synonyms":[{"name":"down regulation of aspartic-type peptidase activity","type":"exact"},{"name":"down-regulation of aspartic-type peptidase activity","type":"exact"},{"name":"downregulation of aspartic-type peptidase activity","type":"exact"},{"name":"inhibition of aspartic-type peptidase activity","type":"narrow"},{"name":"pepsin inhibitor","type":"related"}],"termid":"GO:1905246"}


id: PBO:0080776
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"XK related 7","termid":"PBO:0080776"}


id: GO:0044007
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The movement of an organism from a host to another host or from a host to another place in the environment. The host is defined as the larger of the organisms involved in a symbiotic interaction.","definition_xrefs":["GOC:cc"],"gene_count":0,"genotype_count":0,"name":"obsolete dissemination or transmission of symbiont from host (obsolete GO:0044007)","synonyms":[{"name":"dissemination or transmission of organism from host","type":"exact"}],"termid":"GO:0044007"}


id: GO:0071392
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of stimulus by estradiol, a C18 steroid hormone hydroxylated at C3 and C17 that acts as a potent estrogen.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to estradiol","termid":"GO:0032355"},{"relation_name":"is_a","term_name":"cellular response to lipid","termid":"GO:0071396"},{"relation_name":"is_a","term_name":"cellular response to organic cyclic compound","termid":"GO:0071407"},{"relation_name":"is_a","term_name":"cellular response to oxygen-containing compound","termid":"GO:1901701"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cellular response to estradiol stimulus","synonyms":[{"name":"cellular response to E2 stimulus","type":"exact"}],"termid":"GO:0071392"}


id: GO:1905056
data:
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id: PBO:0002176
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  {"annotation_feature_type":"gene","cv_name":"misc","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"accumulation and persistence of Swi5 foci in rhp54 delta cells","termid":"PBO:0002176"}


id: PBO:0018141
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id: PBO:0059142
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  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MPHOSPH10 pseudogene 9","termid":"PBO:0059142"}


id: PBO:0076292
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id: GO:1901531
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id: SO:0000905
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id: RO:HOM0000058
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id: FYPO:0001533
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id: PBO:0054016
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id: GO:0140997
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id: GO:0098772
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id: PBO:0055697
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id: PBO:0049722
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  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"HAUS augmin like complex subunit 6","termid":"PBO:0049722"}


id: PBO:0044991
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  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DExH-box helicase 58","termid":"PBO:0044991"}


id: PBO:0029786
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id: PBO:0086018
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  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein of unknown function; the authentic, non-tagged protein is detected in highly purified mitochondria in high-throughput studies","termid":"PBO:0086018"}


id: SOFP:date
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id: PR:O74445
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  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A 26S protease regulatory subunit S10B that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO04299","PANTHER:PTHR23073:SF10","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"26S protease subunit rpt4 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC1682.16","secondary_identifiers":["UniProtKB:O74445"],"synonyms":[{"name":"Spom972h-PSMC6","type":"exact"}],"termid":"PR:O74445"}


id: PBO:0051182
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  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"immunoglobulin heavy variable 3-73","termid":"PBO:0051182"}


id: PBO:0083793
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  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Essential protein of the mitochondrial intermembrane space; forms a complex with Tim10p (TIM10 complex) that delivers hydrophobic proteins to the TIM22 complex for insertion into the inner membrane","termid":"PBO:0083793"}


id: GO:0070674
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: hypoxanthine + NAD+ + H2O = xanthine + NADH + H+.","definition_xrefs":["GOC:mah","GOC:pde"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on CH or CH2 groups, NAD or NADP as acceptor","termid":"GO:0016726"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003824","GO:0016491","GO:0003674"],"is_obsolete":false,"name":"hypoxanthine dehydrogenase activity","secondary_identifiers":["Reactome:R-HSA-9727347"],"synonyms":[{"name":"NAD-hypoxanthine dehydrogenase activity","type":"related"},{"name":"hypoxanthine oxidoreductase activity","type":"broad"},{"name":"hypoxanthine-NAD oxidoreductase activity","type":"related"},{"name":"hypoxanthine/NAD(+) oxidoreductase activity","type":"related"},{"name":"hypoxanthine/NAD+ oxidoreductase activity","type":"related"},{"name":"hypoxanthine:NAD+ oxidoreductase activity","type":"related"}],"termid":"GO:0070674"}


id: PBO:0065993
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"retinoic acid induced 2","termid":"PBO:0065993"}


id: GO:0019005
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id: PATO:0000558
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  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0000558 size value (obsolete PATO:0000558)","termid":"PATO:0000558"}


id: PBO:0066187
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA binding motif protein 10","termid":"PBO:0066187"}


id: PBO:0070630
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  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L7 pseudogene 1","termid":"PBO:0070630"}


id: SO:0001523
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id: PBO:0046388
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  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"E1A binding protein p300","termid":"PBO:0046388"}


id: GO:0097431
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id: GO:0052876
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  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 2O + methylamine + 2 oxidized [amicyanin] = formaldehyde + 2 H+ + NH4+ + 2 reduced [amicyanin].","definition_xrefs":["RHEA:30207"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the CH-NH2 group of donors, with a copper protein as acceptor","termid":"GO:0052877"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016491"],"is_obsolete":false,"name":"methylamine dehydrogenase (amicyanin) activity","secondary_identifiers":["EC:1.4.9.1","KEGG_REACTION:R00606","UM-BBD_reactionID:r0075"],"synonyms":[{"name":"MADH activity","type":"broad"},{"name":"amine dehydrogenase","type":"broad"},{"name":"methylamine dehydrogenase activity","type":"exact"},{"name":"methylamine:amicyanin oxidoreductase (deaminating) activity","type":"exact"},{"name":"primary-amine dehydrogenase","type":"broad"}],"termid":"GO:0052876"}


id: SO:0000873
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  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A transcript that is edited.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"guided_by","term_name":"guide_RNA","termid":"SO:0000602"},{"relation_name":"has_part","term_name":"anchor_binding_site","termid":"SO:0000977"},{"relation_name":"has_quality","term_name":"edited","termid":"SO:0000116"},{"relation_name":"is_a","term_name":"transcript","termid":"SO:0000673"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"edited_transcript","synonyms":[{"name":"edited transcript","type":"exact"}],"termid":"SO:0000873"}


id: PBO:0057964
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 3685","termid":"PBO:0057964"}


id: PBO:0055382
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  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2812","termid":"PBO:0055382"}


id: GO:0009349
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  {"annotated_genes":["SJAG_02360"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[106545],"is_not":false,"summary":null,"term":"GO:0009349"}]},"cv_name":"cellular_component","definition":"An flavoprotein that catalyzes the reaction the breakdown of dimethyl(ribityl)lumazine to form riboflavin and ribitylamino-amino-dihydroxypyrimidine.","definition_xrefs":["PMID:18298940"],"direct_ancestors":[{"relation_name":"is_a","term_name":"transferase complex","termid":"GO:1990234"}],"gene_count":1,"genes_by_uniquename":{"SJAG_02360":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0005575","GO:0032991"],"is_obsolete":false,"name":"riboflavin synthase complex","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0009349","terms_by_termid":{"GO:0009349":null}}


id: PBO:0006191
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  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-not_exists_during","termid":"PBO:0006191"}


id: GO:0000075
data:
  {"annotated_genes":["SJAG_02026","SJAG_02451","SJAG_02169","SJAG_04597","SJAG_01837","SJAG_03720","SJAG_01210","SJAG_04280","SJAG_01082","SJAG_02074","SJAG_05373","SJAG_03048","SJAG_01679","SJAG_01680","SJAG_00883","SJAG_04999","SJAG_02098","SJAG_01297","SJAG_04884","SJAG_01330","SJAG_02771","SJAG_01044","SJAG_02563","SJAG_00429","SJAG_04259","SJAG_04287","SJAG_00169","SJAG_01708","SJAG_01873","SJAG_01677","SJAG_01429","SJAG_03160","SJAG_04699","SJAG_03602","SJAG_03438","SJAG_03529","SJAG_01010","SJAG_03026","SJAG_03695","SJAG_03353","SJAG_00364","SJAG_01605","SJAG_01855","SJAG_04140","SJAG_00623","SJAG_01076","SJAG_03073","SJAG_03681","SJAG_00327","SJAG_03942","SJAG_01084","SJAG_01146","SJAG_01205","SJAG_02336","SJAG_03126","SJAG_00486","SJAG_04671","SJAG_04332","SJAG_03927","SJAG_02392","SJAG_00640","SJAG_03327","SJAG_04126","SJAG_02576","SJAG_03898","SJAG_00071","SJAG_00082","SJAG_02266","SJAG_01401"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[110425,100054,109950,95739,86918,108124,112049,103392,104419],"is_not":false,"rel_names":["regulates","negatively_regulates"],"summary":null,"term":"GO:1902426"},{"annotations":[105487],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0000077"},{"annotations":[102468,110653],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1905318"},{"annotations":[88705],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0044778"},{"annotations":[112211,87606,102771],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0033315"},{"annotations":[112212,102772,85267,76972,110415],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0051598"},{"annotations":[112819,97953,110655,102469],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0033316"},{"annotations":[97589,90581,86197,112154,96686],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0044878"},{"annotations":[105488,110416,113827,79010,90120,110623,112155,112385,95348,89740,107362,98516,102773,87966],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0044773"},{"annotations":[95515,90143,87607,96687,113401,104000,85327,102774,112950,113237,90121,108198,88706,105489,95349,112213,99480],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0033314"},{"annotations":[112051,105056,98517,97778,85155],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0031568"},{"annotations":[105847,87485],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0031571"},{"annotations":[90711,112156,94603,92025],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0031569"},{"annotations":[102775,84769,97205,87608,105490,96688,95516,113157,110417,113828,107893,85328,87967,90123,86416],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0007095"},{"annotations":[95350,112214,95517,113238,88707,86641,92190,97677,102776,98518,112215,85374,87609,103833,97010,84770,90712,107894,85329,108200],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0031573"},{"annotations":[95592,102470,110657,112822,86920,97954,106080,111697,109954],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0007094"},{"annotations":[90372],"is_not":false,"rel_names":["regulates","negatively_regulates"],"summary":null,"term":"GO:0140499"},{"annotations":[109955],"is_not":false,"rel_names":["regulates","positively_regulates"],"summary":null,"term":"GO:1905326"},{"annotations":[112826],"is_not":false,"rel_names":["regulates","positively_regulates"],"summary":null,"term":"GO:0090267"},{"annotations":[97488],"is_not":false,"rel_names":["regulates"],"summary":null,"term":"GO:1905325"},{"annotations":[90373],"is_not":false,"rel_names":["regulates"],"summary":null,"term":"GO:0090266"}]},"cv_name":"biological_process","definition":"A signaling process that controls cell cycle progression by monitoring the integrity of specific cell cycle events. A cell cycle checkpoint begins with detection of deficiencies or defects and ends with signal transduction.","definition_xrefs":["GOC:mtg_cell_cycle"],"direct_ancestors":[{"relation_name":"is_a","term_name":"intracellular signal transduction","termid":"GO:0035556"},{"relation_name":"is_a","term_name":"negative regulation of cell cycle phase transition","termid":"GO:1901988"}],"gene_count":69,"genes_by_uniquename":{"SJAG_00071":null,"SJAG_00082":null,"SJAG_00169":null,"SJAG_00327":null,"SJAG_00364":null,"SJAG_00429":null,"SJAG_00486":null,"SJAG_00623":null,"SJAG_00640":null,"SJAG_00883":null,"SJAG_01010":null,"SJAG_01044":null,"SJAG_01076":null,"SJAG_01082":null,"SJAG_01084":null,"SJAG_01146":null,"SJAG_01205":null,"SJAG_01210":null,"SJAG_01297":null,"SJAG_01330":null,"SJAG_01401":null,"SJAG_01429":null,"SJAG_01605":null,"SJAG_01677":null,"SJAG_01679":null,"SJAG_01680":null,"SJAG_01708":null,"SJAG_01837":null,"SJAG_01855":null,"SJAG_01873":null,"SJAG_02026":null,"SJAG_02074":null,"SJAG_02098":null,"SJAG_02169":null,"SJAG_02266":null,"SJAG_02336":null,"SJAG_02392":null,"SJAG_02451":null,"SJAG_02563":null,"SJAG_02576":null,"SJAG_02771":null,"SJAG_03026":null,"SJAG_03048":null,"SJAG_03073":null,"SJAG_03126":null,"SJAG_03160":null,"SJAG_03327":null,"SJAG_03353":null,"SJAG_03438":null,"SJAG_03529":null,"SJAG_03602":null,"SJAG_03681":null,"SJAG_03695":null,"SJAG_03720":null,"SJAG_03898":null,"SJAG_03927":null,"SJAG_03942":null,"SJAG_04126":null,"SJAG_04140":null,"SJAG_04259":null,"SJAG_04280":null,"SJAG_04287":null,"SJAG_04332":null,"SJAG_04597":null,"SJAG_04671":null,"SJAG_04699":null,"SJAG_04884":null,"SJAG_04999":null,"SJAG_05373":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"negatively_regulates","termid":"GO:0007049"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0007049"},{"rel_name":"part_of","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0007049","GO:0023052","GO:0008150"],"is_obsolete":false,"name":"cell cycle checkpoint signaling","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"secondary_identifiers":["Wikipedia:Cell_cycle_checkpoint","GO:0031576","GO:0072395","GO:0072407","GO:0071779","GO:0072404"],"synonyms":[{"name":"G1/S checkpoint","type":"narrow"},{"name":"G1/S transition checkpoint","type":"narrow"},{"name":"G2/M checkpoint","type":"narrow"},{"name":"G2/M transition checkpoint","type":"narrow"},{"name":"cell cycle checkpoint","type":"exact"},{"name":"signal transduction involved in G2/M transition checkpoint","type":"exact"},{"name":"signal transduction involved in cell cycle checkpoint","type":"exact"}],"termid":"GO:0000075","terms_by_termid":{"GO:0000077":null,"GO:0007094":null,"GO:0007095":null,"GO:0031568":null,"GO:0031569":null,"GO:0031571":null,"GO:0031573":null,"GO:0033314":null,"GO:0033315":null,"GO:0033316":null,"GO:0044773":null,"GO:0044778":null,"GO:0044878":null,"GO:0051598":null,"GO:0090266":null,"GO:0090267":null,"GO:0140499":null,"GO:1902426":null,"GO:1905318":null,"GO:1905325":null,"GO:1905326":null}}


id: PATO:0000170
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0000170 yield (obsolete PATO:0000170)","termid":"PATO:0000170"}


id: PBO:0082689
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Component of the HAT/Core module of the SAGA, SLIK, and ADA complexes; HAT/Core module also contains Gcn5p, Ngg1p, and Ada2p; binds methylated histone H3K4; involved in transcriptional regulation through SAGA and TBP recruitment to target promoters and H3 acetylation","termid":"PBO:0082689"}


id: GO:1904017
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a Thyroglobulin triiodothyronine stimulus.","definition_xrefs":["PMID:7531505","GO_REF:0000071","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular response to chemical stimulus","termid":"GO:0070887"},{"relation_name":"is_a","term_name":"response to Thyroglobulin triiodothyronine","termid":"GO:1904016"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cellular response to Thyroglobulin triiodothyronine","termid":"GO:1904017"}


id: FYPO:0002304
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of RNA measured in a cell during a cellular response to salt stress is lower than normal. Total RNA or a specific RNA may be affected.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased RNA level during cellular response to osmotic stress","termid":"FYPO:0002286"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0006551"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0006551","FYPO:0001985","FYPO:0000002","FYPO:0001320"],"is_obsolete":false,"name":"decreased RNA level during cellular response to salt stress","synonyms":[{"name":"decreased RNA level during cellular response to salt stress during mitotic cell cycle","type":"related"},{"name":"decreased RNA level during cellular response to salt stress during vegetative growth","type":"exact"},{"name":"decreased mRNA level during cellular response to salt stress","type":"narrow"},{"name":"decreased transcript level during cellular response to salt stress","type":"exact"},{"name":"reduced RNA level during cellular response to salt stress","type":"exact"}],"termid":"FYPO:0002304"}


id: PBO:0085082
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Nuclear dsRNA-specific ribonuclease (RNase III); involved in rDNA transcription, rRNA processing and U2 snRNA 3' end formation by cleavage of a stem-loop structure at the 3' end of U2 snRNA; involved in polyadenylation-independent transcription termination; involved in the cell wall stress response, regulating the degradation of cell wall integrity and morphogenesis checkpoint genes","termid":"PBO:0085082"}


id: PBO:0086566
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Putative protein of unknown function; conserved among S. cerevisiae strains; YOL085C is not an essential gene; partially overlaps dubious ORF YOL085W-A","termid":"PBO:0086566"}


id: PBO:0031908
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ChAPs family protein Cfp1","termid":"PBO:0031908"}


id: PBO:0067750
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 5S ribosomal pseudogene 49","termid":"PBO:0067750"}


id: GO:0009163
data:
  {"annotated_genes":["SJAG_00044","SJAG_06634","SJAG_05029","SJAG_04264","SJAG_00694","SJAG_01070","SJAG_03096","SJAG_02179","SJAG_01781","SJAG_01859","SJAG_00134","SJAG_03881"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[85089],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0046086"},{"annotations":[112985],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006169"},{"annotations":[104667],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006190"},{"annotations":[104668],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0071590"},{"annotations":[104669],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0071592"},{"annotations":[94754,94755],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0043174"},{"annotations":[89715,111987,85978,89937],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006166"},{"annotations":[109986,93910],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0043097"},{"annotations":[108081],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0046132"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of any one of a family of organic molecules consisting of a purine or pyrimidine base covalently bonded to a sugar ribose (a ribonucleoside) or deoxyribose (a deoxyribonucleoside).","definition_xrefs":["ISBN:0140512713","GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nucleoside metabolic process","termid":"GO:0009116"},{"relation_name":"is_a","term_name":"nucleobase-containing small molecule biosynthetic process","termid":"GO:0034404"},{"relation_name":"is_a","term_name":"organonitrogen compound biosynthetic process","termid":"GO:1901566"},{"relation_name":"is_a","term_name":"glycosyl compound biosynthetic process","termid":"GO:1901659"}],"gene_count":12,"genes_by_uniquename":{"SJAG_00044":null,"SJAG_00134":null,"SJAG_00694":null,"SJAG_01070":null,"SJAG_01781":null,"SJAG_01859":null,"SJAG_02179":null,"SJAG_03096":null,"SJAG_03881":null,"SJAG_04264":null,"SJAG_05029":null,"SJAG_06634":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0055086"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0044281","GO:0055086","GO:0008150"],"is_obsolete":false,"name":"nucleoside biosynthetic process","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"nucleoside anabolism","type":"exact"},{"name":"nucleoside biosynthesis","type":"exact"},{"name":"nucleoside formation","type":"exact"},{"name":"nucleoside synthesis","type":"exact"}],"termid":"GO:0009163","terms_by_termid":{"GO:0006166":null,"GO:0006169":null,"GO:0006190":null,"GO:0043097":null,"GO:0043174":null,"GO:0046086":null,"GO:0046132":null,"GO:0071590":null,"GO:0071592":null}}


id: PBO:0081869
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein 808","termid":"PBO:0081869"}


id: PBO:0078025
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"T cell receptor alpha joining 15","termid":"PBO:0078025"}


id: PBO:0031126
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-loss_of_viability_upon_nutrient_depletion","termid":"PBO:0031126"}


id: GO:1903398
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that modulates the frequency, rate or extent of m7G(5')pppN diphosphatase activity.","definition_xrefs":["GOC:TermGenie","PMID:22323607","GO_REF:0000059"],"gene_count":0,"genotype_count":0,"name":"obsolete regulation of m7G(5')pppN diphosphatase activity (obsolete GO:1903398)","synonyms":[{"name":"regulation of 7-methylguanosine-5'-triphospho-5'-polynucleotide 7-methylguanosine-5'-phosphohydrolase activity","type":"exact"},{"name":"regulation of M(7)G(5')pppN pyrophosphatase activity","type":"exact"},{"name":"regulation of decapase activity","type":"related"},{"name":"regulation of m7G(5')pppN pyrophosphatase activity","type":"exact"}],"termid":"GO:1903398"}


id: PBO:0078376
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"triggering receptor expressed on myeloid cells 2","termid":"PBO:0078376"}


id: GO:1902498
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of protein autoubiquitination.","definition_xrefs":["GOC:rb","GOC:TermGenie","PMID:24069405"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of protein ubiquitination","termid":"GO:0031396"},{"relation_name":"regulates","term_name":"protein autoubiquitination","termid":"GO:0051865"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0070647"}],"interesting_parent_ids":["GO:0008150","GO:0070647"],"is_obsolete":false,"name":"regulation of protein autoubiquitination","synonyms":[{"name":"regulation of protein auto-ubiquitination","type":"exact"},{"name":"regulation of protein auto-ubiquitinylation","type":"exact"},{"name":"regulation of protein autoubiquitinylation","type":"exact"},{"name":"regulation of protein self-ubiquitination","type":"exact"},{"name":"regulation of protein self-ubiquitinylation","type":"exact"}],"termid":"GO:1902498"}


id: PBO:0047371
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"F-box protein 3","termid":"PBO:0047371"}


id: PBO:0083155
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Dubious open reading frame; unlikely to encode a functional protein, based on available experimental and comparative sequence data; almost completely overlaps ORF SYG1/YIL047C","termid":"PBO:0083155"}


id: PBO:0063558
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pellino E3 ubiquitin protein ligase family member 2","termid":"PBO:0063558"}


id: GO:0042134
data:
  {"annotated_genes":["SJAG_02530","SJAG_02723","SJAG_03952","SJAG_03252","SJAG_04492"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[87691,92676,94152,102819,110075],"is_not":false,"summary":null,"term":"GO:0042134"}]},"cv_name":"molecular_function","definition":"Binding to an unprocessed ribosomal RNA transcript.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"rRNA binding","termid":"GO:0019843"}],"gene_count":5,"genes_by_uniquename":{"SJAG_02530":null,"SJAG_02723":null,"SJAG_03252":null,"SJAG_03952":null,"SJAG_04492":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003723"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0005488","GO:0003674","GO:0003723"],"is_obsolete":false,"name":"rRNA primary transcript binding","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"pre-rRNA binding","type":"exact"}],"termid":"GO:0042134","terms_by_termid":{"GO:0042134":null}}


id: PBO:0079725
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"upstream binding transcription factor like 1","termid":"PBO:0079725"}


id: GO:0010726
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that increases the frequency, rate or extent of the chemical reactions and pathways involving hydrogen peroxide.","definition_xrefs":["GOC:dph","GOC:hjd","GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of hydrogen peroxide metabolic process","termid":"GO:0010310"},{"relation_name":"is_a","term_name":"positive regulation of reactive oxygen species metabolic process","termid":"GO:2000379"},{"relation_name":"positively_regulates","term_name":"hydrogen peroxide metabolic process","termid":"GO:0042743"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of hydrogen peroxide metabolic process","synonyms":[{"name":"positive regulation of hydrogen peroxide metabolism","type":"exact"}],"termid":"GO:0010726"}


id: PBO:0064162
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"phospholipase A2 group III","termid":"PBO:0064162"}


id: PBO:0049523
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"H2A.Q variant histone 1, pseudogene","termid":"PBO:0049523"}


id: GO:1903506
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that modulates the frequency, rate or extent of nucleic acid-templated transcription.","definition_xrefs":["GOC:TermGenie","GOC:txnOH","GO_REF:0000058","GOC:vw","GOC:pr"],"gene_count":0,"genotype_count":0,"name":"obsolete regulation of nucleic acid-templated transcription (obsolete GO:1903506)","termid":"GO:1903506"}


id: PBO:0035818
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_gene_conversion_during_vegetative_growth","termid":"PBO:0035818"}


id: GO:0102928
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: beta-solanine + UDP-L-rhamnose = solanine + UDP.","definition_xrefs":["GOC:pz","EC:2.4.1.-"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hexosyltransferase activity","termid":"GO:0016758"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016757"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016740"}],"interesting_parent_ids":["GO:0003674","GO:0016757","GO:0003824","GO:0016740"],"is_obsolete":false,"name":"beta-solanine rhamnosyltransferase activity","secondary_identifiers":["MetaCyc:RXN-8884"],"termid":"GO:0102928"}


id: PBO:0056462
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MBL associated serine protease 2","termid":"PBO:0056462"}


id: PBO:0083118
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DNA replication licensing factor; required for pre-replication complex assembly","termid":"PBO:0083118"}


id: GO:0060792
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The progression of the sweat gland over time, from its formation to the mature structure. Sweat glands secrete an aqueous solution that is used in thermoregulation.","definition_xrefs":["GOC:tb","GOC:dph","GOC:sdb_2009"],"direct_ancestors":[{"relation_name":"is_a","term_name":"gland development","termid":"GO:0048732"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"sweat gland development","termid":"GO:0060792"}


id: FYPO:0000145
data:
  {"alleles_by_uniquename":{"SJAG_00871:allele-1":{"allele_type":"amino_acid_mutation","description":"cut3-T19E","gene_uniquename":"SJAG_00871","name":"cut3-T19E","uniquename":"SJAG_00871:allele-1"},"SJAG_01330:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_01330","name":"mad2delta","uniquename":"SJAG_01330:allele-1"},"SJAG_04284:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_04284","name":"nup61delta","uniquename":"SJAG_04284:allele-1"},"SJAG_04464:allele-1":{"allele_type":"amino_acid_mutation","description":"R152C","gene_uniquename":"SJAG_04464","name":"pim1-R152C","synonyms":[{"name":"Inferred CDK-phospho-mimic mutation","reference":"PMID:28954740","type":"exact"}],"uniquename":"SJAG_04464:allele-1"}},"annotation_feature_type":"genotype","cv_annotations":{"multi_locus_phenotype":[{"annotations":[115329],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0000619"}],"single_locus_phenotype":[{"annotations":[115330],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0000619"},{"annotations":[115593,115560],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0004318"}]},"cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype that affects the regulation of a molecular function, biological process, or biological quality.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular process phenotype","termid":"FYPO:0000114"}],"gene_count":4,"genes_by_uniquename":{"SJAG_00871":null,"SJAG_01330":null,"SJAG_04284":null,"SJAG_04464":null},"genotype_count":3,"genotypes_by_uniquename":{"cut3-T19E-cut3-T19E-amino_acid_mutation-expression-not_assayed_or_wild_type__pim1-R152C-R152C-amino_acid_mutation-expression-not_assayed_or_wild_type":{"display_name":"cut3-T19E(aa) pim1-R152C(aa)","display_uniquename":"cut3-T19E-cut3-T19E-amino_acid_mutation-expression-not_assayed_or_wild_type__pim1-R152C-R152C-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_00871:allele-1","expression":"Not assayed or wild type"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_04464:allele-1","expression":"Not assayed or wild type"}]}]},"mad2delta":{"display_name":"mad2delta","display_uniquename":"mad2delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01330:allele-1","expression":"Null"}]}]},"nup61delta":{"display_name":"nup61delta","display_uniquename":"nup61delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04284:allele-1","expression":"Null"}]}]}},"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0000002"],"is_obsolete":false,"multi_locus_annotated_genes":["SJAG_04464","SJAG_00871"],"name":"regulation phenotype","references_by_uniquename":{"PMID:21802294":null,"PMID:28954740":null,"PMID:32109380":null},"single_locus_annotated_genes":["SJAG_01330","SJAG_04284"],"single_locus_genotype_uniquenames":["nup61delta","mad2delta"],"synonyms":[{"name":"fission yeast regulation phenotype","type":"exact"}],"termid":"FYPO:0000145","terms_by_termid":{"FYECO:0000004":null,"FYECO:0000005":null,"FYECO:0000137":null,"FYECO:0000162":null,"FYPO:0000619":null,"FYPO:0004318":null,"FYPO_EXT:0000001":null}}


id: PATO:0001085
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0001085 absolute acceleration value (obsolete PATO:0001085)","termid":"PATO:0001085"}


id: GO:0033996
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: beta-D-fructopyranosyl-(2->6)-[D-fructofuranosyl-(2->6)]n-D-fructofuranoside = beta-D-fructopyranosyl-(2->6)-[D-fructofuranosyl-(2->6)](n-1)-D-fructofuranoside + di-beta-D-fructofuranose 2,6':2',6-dianhydride. This reaction is the production of di-beta-D-fructofuranose 2,6':2',6-dianhydride (DFA IV) by successively eliminating the diminishing (2->6)-beta-D-fructan (levan) chain from the terminal D-fructosyl-D-fructosyl disaccharide.","definition_xrefs":["EC:4.2.2.16"],"direct_ancestors":[{"relation_name":"is_a","term_name":"carbon-oxygen lyase activity, acting on polysaccharides","termid":"GO:0016837"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016829"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003824","GO:0016829","GO:0003674"],"is_obsolete":false,"name":"levan fructotransferase (DFA-IV-forming) activity","secondary_identifiers":["MetaCyc:4.2.2.16-RXN"],"synonyms":[{"name":"2,6-beta-D-fructan D-fructosyl-D-fructosyltransferase (forming di-beta-D-fructofuranose 2,6':2',6-dianhydride) activity","type":"related"},{"name":"2,6-beta-D-fructan lyase (di-beta-D-fructofuranose-2,6':2',6-dianhydride-forming) activity","type":"related"},{"name":"levan fructotransferase activity","type":"related"}],"termid":"GO:0033996"}


id: PBO:0074373
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SMG1 nonsense mediated mRNA decay associated PI3K related kinase","termid":"PBO:0074373"}


id: PBO:0036204
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_histone_H4-K5,_H4-K8,_H4-K12_and_H4-K16_acetylation_at_centromere_outer_repeat_during_vegetative_growth","termid":"PBO:0036204"}


id: PBO:0004323
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"splicing factor Cwf22","termid":"PBO:0004323"}


id: PBO:0080739
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"WW domain containing transcription regulator 1","termid":"PBO:0080739"}


id: PBO:0069731
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 1012, pseudogene","termid":"PBO:0069731"}


id: PBO:0076873
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"testis expressed 22","termid":"PBO:0076873"}


id: GO:0048657
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which a relatively unspecialized cell acquires specialized features of an anther cell wall tapetum cell. The tapetum is a layer of cells that provides a source of nutrition for the pollen grains as they mature.","definition_xrefs":["GOC:jid","GOC:sm"],"direct_ancestors":[{"relation_name":"is_a","term_name":"developmental process involved in reproduction","termid":"GO:0003006"},{"relation_name":"is_a","term_name":"cell differentiation","termid":"GO:0030154"},{"relation_name":"part_of","term_name":"anther wall tapetum formation","termid":"GO:0048656"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"anther wall tapetum cell differentiation","synonyms":[{"name":"tapetal cell differentiation","type":"broad"}],"termid":"GO:0048657"}


id: PBO:0059970
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MT-ND3 pseudogene 15","termid":"PBO:0059970"}


id: PR:O94476
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A eukaryotic translation initiation factor 6 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO04992","PANTHER:PTHR10784:SF0","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"eukaryotic translation initiation factor 6 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC1919.09","secondary_identifiers":["UniProtKB:O94476"],"synonyms":[{"name":"Spom972h-EIF6","type":"exact"},{"name":"eIF-6 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:O94476"}


id: SO:0001176
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"Non-base-paired sequence of nucleotide bases in tRNA. It contains several dihydrouracil residues.","definition_xrefs":["ISBN:071671920"],"direct_ancestors":[{"relation_name":"is_a","term_name":"tRNA_region","termid":"SO:0001172"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DHU_loop","synonyms":[{"name":"D loop","type":"related"},{"name":"DHU loop","type":"exact"}],"termid":"SO:0001176"}


id: GO:1901889
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of cell junction assembly.","definition_xrefs":["GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of cellular component organization","termid":"GO:0051129"},{"relation_name":"is_a","term_name":"regulation of cell junction assembly","termid":"GO:1901888"},{"relation_name":"negatively_regulates","term_name":"cell junction assembly","termid":"GO:0034329"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0044085"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0044085","GO:0008150"],"is_obsolete":false,"name":"negative regulation of cell junction assembly","synonyms":[{"name":"down regulation of cell junction assembly","type":"exact"},{"name":"down-regulation of cell junction assembly","type":"exact"},{"name":"downregulation of cell junction assembly","type":"exact"},{"name":"inhibition of cell junction assembly","type":"narrow"}],"termid":"GO:1901889"}


id: FYPO:0004673
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell morphology phenotype in which a vegetatively growing cell is inviable, is elongated, contains more than one septum, and contains a nucleus that is broken into small fragments.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"inviable elongated multinucleate vegetative cell","termid":"FYPO:0001493"},{"relation_name":"is_a","term_name":"fragmented nucleus","termid":"FYPO:0006661"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"output_of","termid":"FYPO:0000032"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"has_part","termid":"FYPO:0000004"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000005"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"has_part","termid":"FYPO:0001320"},{"rel_name":"has_part","termid":"FYPO:0001985"},{"rel_name":"has_part","termid":"FYPO:0000005"},{"rel_name":"output_of","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000004"},{"rel_name":"output_of","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0002403"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0000004","FYPO:0001320","FYPO:0000032","FYPO:0002403","FYPO:0001985","FYPO:0000002","FYPO:0005447","FYPO:0000005","FYPO:0000631"],"is_obsolete":false,"name":"inviable elongated multiseptate vegetative cell with fragmented nucleus","synonyms":[{"name":"elongated inviable multiseptate cell with fragmented nucleus","type":"exact"},{"name":"inviable elongated multiseptate cell with fragmented nucleus during vegetative growth","type":"exact"},{"name":"inviable elongated multiseptate vegetative cell with fragmented DNA","type":"related"},{"name":"inviable elongated multiseptate vegetative cell with fragmented nucleus during mitotic cell cycle","type":"related"},{"name":"lethal; elongated multiseptate vegetative cell with fragmented nucleus","type":"exact"}],"termid":"FYPO:0004673"}


id: MOD:00054
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-glutamine residue to N-acetyl-L-glutamine.","definition_xrefs":["RESID:AA0045"],"direct_ancestors":[{"relation_name":"is_a","term_name":"modified L-glutamine residue","termid":"MOD:00907"},{"relation_name":"is_a","term_name":"alpha-amino acetylated residue","termid":"MOD:01458"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:00649"}],"interesting_parent_ids":["MOD:00649"],"is_obsolete":false,"name":"N-acetyl-L-glutamine","synonyms":[{"name":"(2S)-2-acetamido-5-pentanediamic acid","type":"exact"},{"name":"2-acetylamino-5-amino-5-oxopentanoic acid","type":"exact"},{"name":"2-acetylamino-5-pentanediamic acid","type":"exact"},{"name":"2-acetylazanyl-5-azanyl-5-oxopentanoic acid","type":"exact"},{"name":"AcGln","type":"exact"},{"name":"N-acetyl-L-glutamine","type":"exact"},{"name":"N-acetylated L-glutamine","type":"exact"},{"name":"acetylglutamine","type":"exact"}],"termid":"MOD:00054"}


id: PBO:0027445
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_nucleosome_occupancy_at_CRE_site","termid":"PBO:0027445"}


id: FYPO:0000883
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the trimethylation of lysine at position 9 of histone H3 in centromeric regions occurs to a lower extent than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal histone H3-K9 trimethylation at centromere during vegetative growth","termid":"FYPO:0000864"},{"relation_name":"is_a","term_name":"decreased histone H3-K9 trimethylation during vegetative growth","termid":"FYPO:0000882"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0002274"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0002494"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0002274","FYPO:0005447","FYPO:0001320","FYPO:0001985","FYPO:0002494","FYPO:0000002"],"is_obsolete":false,"name":"decreased histone H3-K9 trimethylation at centromere during vegetative growth","synonyms":[{"name":"decreased centromeric histone H3-K9 trimethylation during vegetative growth","type":"exact"},{"name":"decreased histone H3 K9 trimethylation at centromere during vegetative growth","type":"exact"},{"name":"decreased histone H3-K9 trimethylation at centromere during mitotic cell cycle","type":"related"},{"name":"decreased histone H3K9 trimethylation at centromere during vegetative growth","type":"exact"},{"name":"decreased histone H3K9me3 at centromere during vegetative growth","type":"exact"},{"name":"decreased histone lysine H3 K9 trimethylation at centromere during vegetative growth","type":"exact"},{"name":"reduced histone H3-K9 trimethylation at centromere during vegetative growth","type":"exact"}],"termid":"FYPO:0000883"}


id: GO:0048704
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which the anatomical structures of the skeleton are generated and organized during the embryonic phase.","definition_xrefs":["GOC:tb","PMID:16049113","GOC:dsf","GOC:jid","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"embryonic organ morphogenesis","termid":"GO:0048562"},{"relation_name":"is_a","term_name":"skeletal system morphogenesis","termid":"GO:0048705"},{"relation_name":"part_of","term_name":"embryonic skeletal system development","termid":"GO:0048706"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"embryonic skeletal system morphogenesis","synonyms":[{"name":"embryonic skeletal morphogenesis","type":"exact"}],"termid":"GO:0048704"}


id: GO:2000411
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of thymocyte migration.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of T cell migration","termid":"GO:2000405"},{"relation_name":"is_a","term_name":"regulation of thymocyte migration","termid":"GO:2000410"},{"relation_name":"negatively_regulates","term_name":"thymocyte migration","termid":"GO:0072679"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of thymocyte migration","synonyms":[{"name":"negative regulation of immature T cell migration","type":"related"},{"name":"negative regulation of immature T lymphocyte migration","type":"related"},{"name":"negative regulation of immature T-cell migration","type":"related"},{"name":"negative regulation of immature T-lymphocyte migration","type":"related"},{"name":"negative regulation of thymic lymphocyte migration","type":"exact"}],"termid":"GO:2000411"}


id: PBO:0089833
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ATP-dependent RNA helicase Mak5","termid":"PBO:0089833"}


id: GO:0045743
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of fibroblast growth factor receptor signaling pathway activity.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of signal transduction","termid":"GO:0009967"},{"relation_name":"is_a","term_name":"regulation of fibroblast growth factor receptor signaling pathway","termid":"GO:0040036"},{"relation_name":"positively_regulates","term_name":"fibroblast growth factor receptor signaling pathway","termid":"GO:0008543"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0023052"},{"rel_name":"positively_regulates","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"positive regulation of fibroblast growth factor receptor signaling pathway","synonyms":[{"name":"activation of fibroblast growth factor receptor signaling pathway","type":"narrow"},{"name":"positive regulation of FGF receptor signaling pathway","type":"exact"},{"name":"positive regulation of FGF receptor signalling pathway","type":"exact"},{"name":"positive regulation of FGFR signaling pathway","type":"exact"},{"name":"stimulation of fibroblast growth factor receptor signaling pathway","type":"narrow"},{"name":"up regulation of fibroblast growth factor receptor signaling pathway","type":"exact"},{"name":"up-regulation of fibroblast growth factor receptor signaling pathway","type":"exact"},{"name":"upregulation of fibroblast growth factor receptor signaling pathway","type":"exact"}],"termid":"GO:0045743"}


id: PBO:0051477
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"immunoglobulin lambda variable (IV)/OR22-1 (pseudogene)","termid":"PBO:0051477"}


id: PBO:0064878
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protein phosphatase 1 regulatory subunit 37","termid":"PBO:0064878"}


id: GO:0055113
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The expansion of one cell sheet over other cells involved in deuterostomic gastrulation.","definition_xrefs":["ISBN:0878932437"],"direct_ancestors":[{"relation_name":"is_a","term_name":"embryonic morphogenesis","termid":"GO:0048598"},{"relation_name":"is_a","term_name":"epiboly","termid":"GO:0090504"},{"relation_name":"part_of","term_name":"gastrulation with mouth forming second","termid":"GO:0001702"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"epiboly involved in gastrulation with mouth forming second","termid":"GO:0055113"}


id: PBO:0043624
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"catechol-O-methyltransferase domain containing 1","termid":"PBO:0043624"}


id: GO:0045230
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of the capsule, a protective structure surrounding some species of bacteria and fungi.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"external encapsulating structure organization","termid":"GO:0045229"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"capsule organization","synonyms":[{"name":"capsule organisation","type":"exact"},{"name":"capsule organization and biogenesis","type":"related"}],"termid":"GO:0045230"}


id: GO:0009902
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which chloroplasts in photosynthetic cells migrate toward illuminated sites to optimize photosynthesis and move away from excessively illuminated areas to protect the photosynthetic machinery.","definition_xrefs":["PMID:11309623"],"direct_ancestors":[{"relation_name":"is_a","term_name":"chloroplast organization","termid":"GO:0009658"},{"relation_name":"is_a","term_name":"chloroplast localization","termid":"GO:0019750"},{"relation_name":"is_a","term_name":"establishment of plastid localization","termid":"GO:0051667"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0051179"}],"interesting_parent_ids":["GO:0008150","GO:0051179"],"is_obsolete":false,"name":"chloroplast relocation","synonyms":[{"name":"chloroplast movement","type":"exact"}],"termid":"GO:0009902"}


id: GO:0031987
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Self-propelled movement of a cell or organism from one location to another in a behavioral context; the aspect of locomotory behavior having to do with movement.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"locomotion","termid":"GO:0040011"},{"relation_name":"part_of","term_name":"locomotory behavior","termid":"GO:0007626"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"locomotion involved in locomotory behavior","synonyms":[{"name":"locomotion during locomotory behaviour","type":"exact"}],"termid":"GO:0031987"}


id: GO:0071499
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a laminar fluid shear stress stimulus. Laminar fluid flow is the force acting on an object in a system where the fluid is moving across a solid surface in parallel layers.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to laminar fluid shear stress","termid":"GO:0034616"},{"relation_name":"is_a","term_name":"cellular response to fluid shear stress","termid":"GO:0071498"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cellular response to laminar fluid shear stress","termid":"GO:0071499"}


id: PBO:0059613
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MT-ATP6 pseudogene 25","termid":"PBO:0059613"}


id: GO:0034432
data:
  {"annotated_genes":["SJAG_04870"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[84935],"is_not":false,"summary":null,"term":"GO:0034432"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: P1-P6-bis(5'-adenosyl) pentaphosphate + H2O = AMP + adenosine 5'-tetraphosphate.","definition_xrefs":["PMID:10085096","PMID:9450008"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pyrophosphatase activity","termid":"GO:0016462"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04870":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016787"}],"interesting_parent_ids":["GO:0016787","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"bis(5'-adenosyl)-pentaphosphatase activity","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"AP(5)A hydrolase activity","type":"exact"},{"name":"AP-5-A hydrolase activity","type":"exact"},{"name":"AP5A hydrolase activity","type":"exact"},{"name":"Ap5a pyrophosphohydrolase activity","type":"exact"},{"name":"diadenosine 5',5'''-P1,P6-pentaphosphate hydrolase activity","type":"exact"}],"termid":"GO:0034432","terms_by_termid":{"GO:0034432":null}}


id: PBO:0057584
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 889","termid":"PBO:0057584"}


id: PBO:0004625
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pescadillo-family BRCT domain protein (predicted)","termid":"PBO:0004625"}


id: PBO:0068918
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 161, pseudogene","termid":"PBO:0068918"}


id: PBO:0050054
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"major histocompatibility complex, class I, U (pseudogene)","termid":"PBO:0050054"}


id: FYPO:0006419
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype in which sites at which the protein Rad51 accumulates remain present for longer than normal during the meiotic cell cycle. Normally, Rad51 foci form during prophase I but disappear before metaphase I.","definition_xrefs":["PomBase:mah","PMID:27304859"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal cellular physical quality phenotype","termid":"FYPO:0004638"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000002"],"is_obsolete":false,"name":"increased duration of Rad51 focus presence during meiotic cell cycle","synonyms":[{"name":"prolonged Rad51 focus presence during meiotic cell cycle","type":"exact"}],"termid":"FYPO:0006419"}


id: PBO:0054119
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1485","termid":"PBO:0054119"}


id: GO:0047963
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: choloyl-CoA + glycine = CoA + glycocholate.","definition_xrefs":["EC:2.3.1.65","MetaCyc:GLYCINE-N-CHOLOYLTRANSFERASE-RXN"],"direct_ancestors":[{"relation_name":"is_a","term_name":"acyltransferase activity, transferring groups other than amino-acyl groups","termid":"GO:0016747"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0016746"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016746","GO:0003674","GO:0003824","GO:0016740"],"is_obsolete":false,"name":"glycine N-choloyltransferase activity","secondary_identifiers":["RHEA:14001"],"synonyms":[{"name":"BACAT activity","type":"related"},{"name":"BAT activity","type":"related"},{"name":"amino acid N-choloyltransferase activity","type":"related"},{"name":"bile acid-CoA:amino acid N-acyltransferase activity","type":"related"},{"name":"choloyl-CoA:glycine N-choloyltransferase activity","type":"related"},{"name":"cholyl-CoA glycine-taurine N-acyltransferase activity","type":"related"},{"name":"cholyl-CoA:taurine N-acyltransferase activity","type":"related"},{"name":"glycine--taurine N-acyltransferase activity","type":"related"}],"termid":"GO:0047963"}


id: PBO:0036369
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"helper of TIM Hot13 (predicted)","termid":"PBO:0036369"}


id: GO:0061676
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a member of the importin-alpha family.","definition_xrefs":["PMID:23734157","PMID:15350979","PMID:17170104"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein binding","termid":"GO:0005515"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0005515"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0005488","GO:0005515","GO:0003674"],"is_obsolete":false,"name":"importin-alpha family protein binding","termid":"GO:0061676"}


id: PBO:0082604
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Cobalamin-independent methionine synthase; involved in methionine biosynthesis and regeneration; requires a minimum of two glutamates on the methyltetrahydrofolate substrate, similar to bacterial metE homologs","termid":"PBO:0082604"}


id: PBO:0060143
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"myotrophin","termid":"PBO:0060143"}


id: GO:0045240
data:
  {"annotated_genes":["SJAG_03064","SJAG_00866","SJAG_03290","SJAG_03163","SJAG_02464","SJAG_01402","SJAG_06382","SJAG_02006","SJAG_02158"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[102890,83650,106299,108233],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0045252"},{"annotations":[95190,114566,83651,91175,104759,110394],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0045254"}]},"cv_name":"cellular_component","definition":"A multi-enzyme complex that catalyzes the oxidative decarboxylation of an alpha-ketoacid - pyruvate, a branched-chain alpha-ketoacid or alpha-ketoglutarate (also known as 2-oxoglutarate). The complex comprises multiple copies of three enzymes referred to as E1, E2 and E3: a dihydrolipoyl transacylase (E2) forms the core of the complex, with an alpha-ketoacid dehydrogenase (E1) and a dihydrolipoamide dehydrogenase (E3) attached through non-covalent bonds. The E1 and E2 components are specific to different alpha-ketoacid dehydrogenase complexes, whereas the E3 component is the same. Additional proteins may also be present.","definition_xrefs":["GOC:mah","PMID:10745006"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase complex","termid":"GO:1990204"}],"gene_count":9,"genes_by_uniquename":{"SJAG_00866":null,"SJAG_01402":null,"SJAG_02006":null,"SJAG_02158":null,"SJAG_02464":null,"SJAG_03064":null,"SJAG_03163":null,"SJAG_03290":null,"SJAG_06382":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575","GO:0032991"],"is_obsolete":false,"name":"alpha-ketoacid dehydrogenase complex","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"2-oxoacid dehydrogenase complex","type":"exact"},{"name":"dihydrolipoyl dehydrogenase complex","type":"exact"}],"termid":"GO:0045240","terms_by_termid":{"GO:0045252":null,"GO:0045254":null}}


id: PBO:0004206
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"gamma-tubulin","termid":"PBO:0004206"}


id: PBO:0030928
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_citrate_(Si)-synthase_activity","termid":"PBO:0030928"}


id: PBO:0003396
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"GTPase activating protein Gap1","termid":"PBO:0003396"}


id: GO:0106115
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of mitotic cohesin dsDNA (leading strand) loading.","definition_xrefs":["PMID:29358048"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of mitotic cohesin dsDNA (leading strand) loading","termid":"GO:0106114"},{"relation_name":"is_a","term_name":"negative regulation of mitotic cohesin loading","termid":"GO:1905412"},{"relation_name":"negatively_regulates","term_name":"mitotic cohesin dsDNA (leading strand) loading","termid":"GO:0062021"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"negatively_regulates","termid":"GO:0007049"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0007049"}],"interesting_parent_ids":["GO:0008150","GO:0007049"],"is_obsolete":false,"name":"negative regulation of mitotic cohesin dsDNA (leading strand) loading","termid":"GO:0106115"}


id: GO:0102702
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: geranyl diphosphate = (+)-2-carene + diphosphoric acid.","definition_xrefs":["GOC:pz","PMID:10700382"],"direct_ancestors":[{"relation_name":"is_a","term_name":"carbon-oxygen lyase activity, acting on phosphates","termid":"GO:0016838"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016829"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016829"],"is_obsolete":false,"name":"2-carene synthase activity","secondary_identifiers":["MetaCyc:RXN-5122"],"termid":"GO:0102702"}


id: PBO:0069677
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 954, pseudogene","termid":"PBO:0069677"}


id: GO:0017162
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to an aryl hydrocarbon receptor.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"signaling receptor binding","termid":"GO:0005102"},{"relation_name":"is_a","term_name":"RNA polymerase II-specific DNA-binding transcription factor binding","termid":"GO:0061629"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0005515"}],"interesting_parent_ids":["GO:0003674","GO:0005488","GO:0005515"],"is_obsolete":false,"name":"aryl hydrocarbon receptor binding","termid":"GO:0017162"}


id: GO:0047822
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: H+ + hypotaurine + NADPH + O2 = H2O + NADP+ + taurine.","definition_xrefs":["RHEA:69819"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen","termid":"GO:0016709"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0016491","GO:0003824"],"is_obsolete":false,"name":"hypotaurine dehydrogenase activity","secondary_identifiers":["Reactome:R-HSA-1655453","EC:1.14.13.8","MetaCyc:HYPOTAURINE-DEHYDROGENASE-RXN"],"termid":"GO:0047822"}


id: PBO:0003599
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transcription factor TFIIIC complex subunit Sfc9 (predicted)","termid":"PBO:0003599"}


id: PBO:0003228
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Vid27 family protein","termid":"PBO:0003228"}


id: PBO:0090795
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CCAAT-binding factor complex repressor Php4","termid":"PBO:0090795"}


id: GO:2000500
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that activates or increases the frequency, rate or extent of induction of apoptosis in response to chemical stimulus.","definition_xrefs":["GOC:obol","GOC:mtg_apoptosis"],"gene_count":0,"genotype_count":0,"name":"obsolete positive regulation of induction of apoptosis in response to chemical stimulus (obsolete GO:2000500)","synonyms":[{"name":"positive regulation of induction of apoptosis in response to chemical stimulus","type":"exact"},{"name":"positive regulation of induction of apoptosis in response to chemical substance","type":"exact"}],"termid":"GO:2000500"}


id: FYPO:0007643
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which the dimethylation of lysine at position 9 of histone H3 occurs to a lower extent than normal in centromere outer repeat regions during G0 phase.","definition_xrefs":["PomBase:mah","PMID:27738016"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased histone H3-K9 methylation during G0","termid":"FYPO:0007641"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0002274"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0002494"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0002274","FYPO:0005447","FYPO:0000002","FYPO:0002494","FYPO:0001985"],"is_obsolete":false,"name":"decreased histone H3-K9 dimethylation at centromere outer repeat during G0","synonyms":[{"name":"decreased histone H3 K9 dimethylation at centromere outer repeat during G0","type":"exact"},{"name":"decreased histone H3-K9 dimethylation at centromere otr during G0","type":"exact"},{"name":"decreased histone H3-K9 dimethylation at centromere outer repeat during cell quiescence","type":"exact"},{"name":"decreased histone H3-K9 dimethylation at centromere outer repeat during quiescence","type":"exact"},{"name":"decreased histone H3-K9 dimethylation at pericentric region during G0","type":"related"},{"name":"decreased histone H3-K9 dimethylation at pericentromeric region during G0","type":"related"},{"name":"decreased histone H3K9 dimethylation at centromere outer repeat during G0","type":"exact"},{"name":"decreased histone H3K9me2 dimethylation at centromere outer repeat during G0","type":"exact"},{"name":"reduced histone H3-K9 dimethylation at centromere outer repeat during G0","type":"exact"}],"termid":"FYPO:0007643"}


id: FYPO:0004798
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which the second meiotic nuclear division does not occur during a cycle of azygotic meiosis and sporulation. Azygotic meiosis and sporulation occur when meiosis takes place within a diploid cell rather than in a zygote produced by sporulation. Zygotes can resume vegetative growth and form colonies of diploid cells if returned to rich media before commitment to meiosis; under nitrogen starvation, diploid cells heterozygous for mating type will undergo azygotic meiosis. Azygotic asci have a characteristic linear morphology resembling that of a single vegetatively growing cell.","definition_xrefs":["PMID:22558440","PomBase:mah","PMID:25891897"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abolished meiosis II","termid":"FYPO:0003379"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000631"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0000631","FYPO:0005447","FYPO:0001985"],"is_obsolete":false,"name":"abolished azygotic meiosis II","synonyms":[{"name":"abolished azygotic second meiotic nuclear division","type":"exact"},{"name":"abolished meiosis II during azygotic meiosis","type":"exact"}],"termid":"FYPO:0004798"}


id: PBO:0054518
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1918","termid":"PBO:0054518"}


id: GO:0005732
data:
  {"annotated_genes":["SJAG_02350","SJAG_00566","SJAG_01551","SJAG_03425","SJAG_02547","SJAG_03796","SJAG_03954","SJAG_06613","SJAG_02681","SJAG_03125","SJAG_00955","SJAG_04492","SJAG_02377","SJAG_04754","SJAG_01327","SJAG_00083","SJAG_00943","SJAG_01623","SJAG_04108","SJAG_04916","SJAG_04286","SJAG_03410","SJAG_04586","SJAG_04908","SJAG_00744","SJAG_03952","SJAG_00572","SJAG_00294","SJAG_01234","SJAG_03234","SJAG_04582","SJAG_02553","SJAG_04069","SJAG_02662","SJAG_00559","SJAG_01369"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[86828,87410,89873,91997,94147,96885,96910,102491,103261,104197,104770,107941,109707,112204],"is_not":false,"summary":null,"term":"GO:0005732"},{"annotations":[94949,104252,90299,106366,107504],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0031428"},{"annotations":[86212,91525,97314,102436],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0031429"},{"annotations":[92671,92961,111452,90877,101807,100925,87272,101808,109655,100709,111536,95642,114701],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0000172"}]},"cv_name":"cellular_component","definition":"A ribonucleoprotein complex that contains an RNA molecule of the snoRNA family and associated proteins. Many are involved in a step of processing of rRNA molecules: cleavage, 2'-O-methylation, or pseudouridylation, but other RNA types can be targets as well. The majority fall into one of two classes, box C/D type or box H/ACA type, which are conserved across eukaryotes and archaea. Other members include the telomerase RNA and the ribonuclease MRP RNA.","definition_xrefs":["GOC:mah","ISBN:0879695897","PMID:17284456","GOC:krc"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ribonucleoprotein complex","termid":"GO:1990904"}],"gene_count":36,"genes_by_uniquename":{"SJAG_00083":null,"SJAG_00294":null,"SJAG_00559":null,"SJAG_00566":null,"SJAG_00572":null,"SJAG_00744":null,"SJAG_00943":null,"SJAG_00955":null,"SJAG_01234":null,"SJAG_01327":null,"SJAG_01369":null,"SJAG_01551":null,"SJAG_01623":null,"SJAG_02350":null,"SJAG_02377":null,"SJAG_02547":null,"SJAG_02553":null,"SJAG_02662":null,"SJAG_02681":null,"SJAG_03125":null,"SJAG_03234":null,"SJAG_03410":null,"SJAG_03425":null,"SJAG_03796":null,"SJAG_03952":null,"SJAG_03954":null,"SJAG_04069":null,"SJAG_04108":null,"SJAG_04286":null,"SJAG_04492":null,"SJAG_04582":null,"SJAG_04586":null,"SJAG_04754":null,"SJAG_04908":null,"SJAG_04916":null,"SJAG_06613":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0032991","GO:0005575"],"is_obsolete":false,"name":"sno(s)RNA-containing ribonucleoprotein complex","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"sRNP","type":"narrow"},{"name":"small nucleolar ribonucleoprotein","type":"narrow"},{"name":"small nucleolar ribonucleoprotein complex","type":"narrow"},{"name":"small ribonucleoprotein","type":"narrow"},{"name":"small ribonucleoprotein protein complex","type":"narrow"},{"name":"snoRNP","type":"narrow"}],"termid":"GO:0005732","terms_by_termid":{"GO:0000172":null,"GO:0005732":null,"GO:0031428":null,"GO:0031429":null}}


id: PBO:0080113
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ubiquitously transcribed tetratricopeptide repeat containing, Y-linked","termid":"PBO:0080113"}


id: PBO:0071618
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L36a pseudogene 36","termid":"PBO:0071618"}


id: PBO:0048846
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"N-acetylglucosamine-1-phosphate transferase subunits alpha and beta","termid":"PBO:0048846"}


id: GO:1901610
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of vesicle transport along microtubule.","definition_xrefs":["GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of intracellular transport","termid":"GO:0032388"},{"relation_name":"is_a","term_name":"regulation of vesicle transport along microtubule","termid":"GO:1901608"},{"relation_name":"positively_regulates","term_name":"vesicle transport along microtubule","termid":"GO:0047496"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"positively_regulates","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0006810","GO:0008150"],"is_obsolete":false,"name":"positive regulation of vesicle transport along microtubule","synonyms":[{"name":"activation of microtubule-based vesicle localization","type":"exact"},{"name":"activation of vesicle transport along microtubule","type":"narrow"},{"name":"positive regulation of microtubule-based vesicle localization","type":"exact"},{"name":"up regulation of microtubule-based vesicle localization","type":"exact"},{"name":"up regulation of vesicle transport along microtubule","type":"exact"},{"name":"up-regulation of microtubule-based vesicle localization","type":"exact"},{"name":"up-regulation of vesicle transport along microtubule","type":"exact"},{"name":"upregulation of microtubule-based vesicle localization","type":"exact"},{"name":"upregulation of vesicle transport along microtubule","type":"exact"}],"termid":"GO:1901610"}


id: PBO:0088982
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ERMES complex subunit, membrane tether and lipid transfer protein Mdm34","termid":"PBO:0088982"}


id: PATO:0001472
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A depth which is relatively low.","definition_xrefs":["PATOC:GVG"],"direct_ancestors":[{"relation_name":"decreased_in_magnitude_relative_to","term_name":"normal","termid":"PATO:0000461"},{"relation_name":"is_a","term_name":"decreased size","termid":"PATO:0000587"},{"relation_name":"is_a","term_name":"depth","termid":"PATO:0001595"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"decreased depth","secondary_identifiers":["PATO:0001692"],"synonyms":[{"name":"low depth","type":"exact"},{"name":"shallow","type":"exact"}],"termid":"PATO:0001472"}


id: GO:0097143
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A heterodimeric protein complex consisting of PUMA and BCL-xl, members of the Bcl-2 family of anti- and proapoptotic regulators.","definition_xrefs":["GOC:so","PMID:14634621"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Bcl-2 family protein complex","termid":"GO:0097136"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0032991","GO:0005575"],"is_obsolete":false,"name":"PUMA-BCL-xl complex","termid":"GO:0097143"}


id: PBO:0063896
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"phosphatidylinositol glycan anchor biosynthesis class T","termid":"PBO:0063896"}


id: PBO:0069637
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 914, pseudogene","termid":"PBO:0069637"}


id: FYPO:0006189
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to actin cables is normal (i.e. indistinguishable from wild type). Actin cables are parallel actin filament bundles nucleated by formin, and are the most common form of actin filament bundles found in yeasts.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal protein localization to actin cytoskeleton during vegetative growth","termid":"FYPO:0003441"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0001312"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0000138","FYPO:0000257","FYPO:0000002","FYPO:0001312"],"is_obsolete":false,"name":"normal protein localization to actin cable","synonyms":[{"name":"normal protein localisation to actin cable","type":"exact"},{"name":"normal protein localization to actin cable during mitotic cell cycle","type":"related"},{"name":"normal protein localization to actin cable during vegetative growth","type":"exact"},{"name":"normal protein localization to formin-nucleated actin cable","type":"exact"}],"termid":"FYPO:0006189"}


id: PBO:0039804
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ADP ribosylation factor 1 pseudogene 2","termid":"PBO:0039804"}


id: PBO:0039888
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ARHGAP42 pseudogene 5","termid":"PBO:0039888"}


id: PBO:0082024
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zyxin pseudogene 1","termid":"PBO:0082024"}


id: PBO:0071924
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein S4X pseudogene 1","termid":"PBO:0071924"}


id: PBO:0072726
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ryanodine receptor 1","termid":"PBO:0072726"}


id: PBO:0060687
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"N-deacetylase and N-sulfotransferase 2","termid":"PBO:0060687"}


id: PBO:0067303
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 388, pseudogene","termid":"PBO:0067303"}


id: PBO:0061105
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NLR family CARD domain containing 3","termid":"PBO:0061105"}


id: GO:0033966
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: N-benzylformamide + H2O = formate + benzylamine.","definition_xrefs":["EC:3.5.1.91"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides","termid":"GO:0016811"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016810"}],"interesting_parent_ids":["GO:0016810","GO:0003824","GO:0016787","GO:0003674"],"is_obsolete":false,"name":"N-substituted formamide deformylase activity","secondary_identifiers":["MetaCyc:3.5.1.91-RXN","RHEA:12096"],"synonyms":[{"name":"N-benzylformamide amidohydrolase activity","type":"related"},{"name":"NfdA","type":"related"}],"termid":"GO:0033966"}


id: GO:0060329
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The actin filament-based movement by which cytoplasmic actin filaments slide past one another resulting in a contraction that propels the cell in the direction that has been defined as the rear of the cell.","definition_xrefs":["GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cytoplasmic actin-based contraction involved in cell motility","termid":"GO:0060327"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cytoplasmic actin-based contraction involved in rearward cell motility","synonyms":[{"name":"cytoplasmic actin-based contraction involved in rearward cell locomotion","type":"related"}],"termid":"GO:0060329"}


id: PBO:0089377
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"splicing factor, pinin ortholog Pnn1","termid":"PBO:0089377"}


id: PBO:0047739
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"fibronectin type III domain containing 3B","termid":"PBO:0047739"}


id: GO:0061667
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the transfer of URM1 to a substrate protein via the reaction X-URM1 + S = X + S-URM1, where X is either an E2 or E3 enzyme, the X-URM1 linkage is a thioester bond, and the S-URM1 linkage is an isopeptide bond between the C-terminal amino acid of URM1 and the epsilon-amino group of lysine residues in the substrate.","definition_xrefs":["GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"URM1 transferase activity","termid":"GO:0042294"},{"relation_name":"is_a","term_name":"ubiquitin-like protein ligase activity","termid":"GO:0061659"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0140096"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0019787"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0016746"}],"interesting_parent_ids":["GO:0016740","GO:0140096","GO:0003824","GO:0003674","GO:0016746","GO:0019787"],"is_obsolete":false,"name":"URM1 ligase activity","synonyms":[{"name":"E3","type":"broad"}],"termid":"GO:0061667"}


id: GO:0007313
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Polarization of the oocyte along the dorsal-ventral axis, by a gene product encoded by somatic cells. An example of this is found in Drosophila melanogaster.","definition_xrefs":["GOC:dph","GOC:mtg_sensu","ISBN:0879694238","GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oocyte dorsal/ventral axis specification","termid":"GO:0007310"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"maternal specification of dorsal/ventral axis, oocyte, soma encoded","secondary_identifiers":["GO:0048125"],"synonyms":[{"name":"maternal determination of dorsal/ventral axis, oocyte, soma encoded","type":"exact"},{"name":"maternal specification of dorsal-ventral axis, oocyte, soma encoded","type":"exact"},{"name":"maternal specification of dorsoventral axis, oocyte, soma encoded","type":"exact"}],"termid":"GO:0007313"}


id: PBO:0064867
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PPP1R26 antisense RNA 1","termid":"PBO:0064867"}


id: PBO:0078575
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tripartite motif-containing 51J, pseudogene","termid":"PBO:0078575"}


id: GO:0034730
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"An SMN-Sm protein complex formed by the association of the methylated Sm proteins B/B', D1, D2, D3, E, F, and G with the SMN complex.","definition_xrefs":["PMID:17401408","PMID:12975319"],"direct_ancestors":[{"relation_name":"is_a","term_name":"SMN-Sm protein complex","termid":"GO:0034719"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005737","GO:0032991","GO:0005575"],"is_obsolete":false,"name":"SmD-containing SMN-Sm protein complex","synonyms":[{"name":"SMN-containing protein complex","type":"broad"}],"termid":"GO:0034730"}


id: PR:Q8J1M8
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPAC1952.04c gene.","definition_xrefs":["UniProtKB:Q8J1M8","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"UPF0768 protein C1952.04c (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC1952.04c","synonyms":[{"name":"Spom972h-SPAC1952.04c","type":"exact"}],"termid":"PR:Q8J1M8"}


id: PBO:0002460
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"40S ribosomal protein S28 (predicted)","termid":"PBO:0002460"}


id: PBO:0072996
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Scm polycomb group protein like 4","termid":"PBO:0072996"}


id: SO:0001840
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A GATA transcription factor element containing the consensus sequence WGATAR (in which W indicates A/T and R indicates A/G).","definition_xrefs":["PMID:8321208"],"direct_ancestors":[{"relation_name":"is_a","term_name":"TF_binding_site","termid":"SO:0000235"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"GATA_box","synonyms":[{"name":"GATA box","type":"exact"},{"name":"GATA element","type":"related"}],"termid":"SO:0001840"}


id: GO:0019460
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of glutamine into other compounds, including fumarate.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"fumarate metabolic process","termid":"GO:0006106"},{"relation_name":"is_a","term_name":"glutamate catabolic process","termid":"GO:0006538"},{"relation_name":"is_a","term_name":"glutamine catabolic process","termid":"GO:0006543"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0006520"},{"rel_name":"is_a","termid":"GO:0044248"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0044248","GO:0044281","GO:0006520","GO:0008150"],"is_obsolete":false,"name":"glutamine catabolic process to fumarate","synonyms":[{"name":"glutamate catabolic process to fumarate","type":"narrow"},{"name":"glutamine breakdown to fumarate","type":"exact"},{"name":"glutamine degradation to fumarate","type":"exact"}],"termid":"GO:0019460"}


id: PR:Q6LA55
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPAC3H5.09c gene.","definition_xrefs":["UniProtKB:Q6LA55","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"UPF0648 protein C3H5.09c (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC3H5.09c","synonyms":[{"name":"Spom972h-SPAC3H5.09c","type":"exact"}],"termid":"PR:Q6LA55"}


id: GO:0018405
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Keratan sulfate components are covalently linked to a core glycoprotein via O-glycosidic linkages between xylose and threonine residues.","definition_xrefs":["RESID:AA0247"],"direct_ancestors":[{"relation_name":"is_a","term_name":"peptidyl-threonine modification","termid":"GO:0018210"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"protein-keratan sulfate linkage via keratan sulfate D-glucuronyl-D-galactosyl-D-galactosyl-D-xylosyl-L-threonine","synonyms":[{"name":"protein-keratan sulphate linkage via keratan sulphate D-glucuronyl-D-galactosyl-D-galactosyl-D-xylosyl-L-threonine","type":"exact"}],"termid":"GO:0018405"}


id: PBO:0063380
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"programmed cell death 1","termid":"PBO:0063380"}


id: PBO:0002391
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nucleolar RNA snoR69b (predicted)","termid":"PBO:0002391"}


id: PBO:0087150
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA-dependent DExD/H-box ATPase; required for activation of spliceosome before first transesterification step in RNA splicing; implicated in rearranging and proofreading snRNA structure in catalytic activation of spliceosome; ortholog of human protein DHX16","termid":"PBO:0087150"}


id: GO:0014709
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates, maintains or increases the frequency, rate or extent of somitomeric trunk muscle development. The somitomeric trunk muscle is derived from somitomeric mesoderm. The muscle begins its development with the differentiation of the muscle cells and ends with the mature muscle.","definition_xrefs":["GOC:mtg_muscle"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of somitomeric trunk muscle development","termid":"GO:0014708"},{"relation_name":"is_a","term_name":"positive regulation of muscle organ development","termid":"GO:0048636"},{"relation_name":"positively_regulates","term_name":"somitomeric trunk muscle development","termid":"GO:0002075"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of somitomeric trunk muscle development","termid":"GO:0014709"}


id: PBO:0048598
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"growth hormone releasing hormone","termid":"PBO:0048598"}


id: MOD:01618
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-alaine residue and an L-asparagine residue to L-alanyl-L-isoaspartyl cyclopeptide.","definition_xrefs":["PubMed:19928958","PubMed:3207697","RESID:AA0515"],"direct_ancestors":[{"relation_name":"is_a","term_name":"isopeptide crosslinked residues","termid":"MOD:00688"},{"relation_name":"is_a","term_name":"crosslinked residues with loss of ammonia","termid":"MOD:00946"},{"relation_name":"is_a","term_name":"crosslinked L-alanine residue","termid":"MOD:02040"},{"relation_name":"is_a","term_name":"crosslinked L-asparagine residue","termid":"MOD:02042"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"L-alanyl-L-isoaspartyl cyclopeptide","synonyms":[{"name":"(2S,5S)-2-methyl-3,7-dioxo-1,4-diazepane-5-carboxylic acid","type":"exact"},{"name":"1,4.2-anhydro(L-alanyl-L-aspartic acid)","type":"exact"},{"name":"CROSSLNK Alanine isoaspartyl cyclopeptide (Ala-Asn)","type":"exact"},{"name":"L-alanyl-L-isoaspartyl cyclopeptide","type":"exact"}],"termid":"MOD:01618"}


id: GO:0097449
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A prolongation or process extending from the soma of an astrocyte and wrapping around neurons.","definition_xrefs":["NIF_Subcellular:sao1630537580"],"direct_ancestors":[{"relation_name":"is_a","term_name":"glial cell projection","termid":"GO:0097386"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"astrocyte projection","synonyms":[{"name":"astrocyte process","type":"exact"},{"name":"peripheral astrocyte process","type":"related"},{"name":"vellous process","type":"related"}],"termid":"GO:0097449"}


id: PBO:0059203
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MAS related GPR family member X10, pseudogene","termid":"PBO:0059203"}


id: GO:0030989
data:
  {"annotated_genes":["SJAG_00113","SJAG_05185","SJAG_01662","SJAG_02561","SJAG_04001","SJAG_04143","SJAG_00140","SJAG_01370","SJAG_03073","SJAG_00397","SJAG_03673","SJAG_02737","SJAG_02286","SJAG_02045","SJAG_01863","SJAG_00368"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[83987,87183,87562,88014,91381,93747,96880,97583,99125,99417,107217,107386,107564,110115,113085],"is_not":false,"summary":null,"term":"GO:0030989"},{"annotations":[102747,107388],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0032118"},{"annotations":[97587],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:1903563"}]},"cv_name":"biological_process","definition":"Oscillatory movement of the nucleus involved in meiosis I. This oscillatory movement is led by an astral microtubule array emanating from the spindle pole body, and driven by the microtubule motor cytoplasmic dynein.","definition_xrefs":["PMID:16111942","PMID:9572142","GOC:vw"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nuclear migration along microtubule","termid":"GO:0030473"},{"relation_name":"is_a","term_name":"meiotic cell cycle process","termid":"GO:1903046"},{"relation_name":"part_of","term_name":"meiosis I","termid":"GO:0007127"}],"gene_count":16,"genes_by_uniquename":{"SJAG_00113":null,"SJAG_00140":null,"SJAG_00368":null,"SJAG_00397":null,"SJAG_01370":null,"SJAG_01662":null,"SJAG_01863":null,"SJAG_02045":null,"SJAG_02286":null,"SJAG_02561":null,"SJAG_02737":null,"SJAG_03073":null,"SJAG_03673":null,"SJAG_04001":null,"SJAG_04143":null,"SJAG_05185":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0007049"},{"rel_name":"part_of","termid":"GO:0140013"},{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006810","GO:0007049","GO:0051179","GO:0140013","GO:0008150"],"is_obsolete":false,"name":"dynein-driven meiotic oscillatory nuclear movement","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"HNM","type":"exact"},{"name":"horsetail movement","type":"exact"},{"name":"horsetail nuclear movement","type":"exact"}],"termid":"GO:0030989","terms_by_termid":{"GO:0030989":null,"GO:0032118":null,"GO:1903563":null}}


id: SO:0002151
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A uORF beginning with a codon other than AUG.","definition_xrefs":["PMID:26684391","PMID:27313038"],"direct_ancestors":[{"relation_name":"is_a","term_name":"uORF","termid":"SO:0002027"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"non_AUG_initiated_uORF","synonyms":[{"name":"non AUG initiated uORF","type":"exact"}],"termid":"SO:0002151"}


id: PBO:0000481
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"prefoldin subunit 3 Pac10 (predicted)","termid":"PBO:0000481"}


id: PBO:0091824
data:
  {"annotation_feature_type":"gene","cv_name":"complementation","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"not functionally complemented by A. thaliana cdc2bAt","termid":"PBO:0091824"}


id: PBO:0017560
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA threonylcarbamoyladenosine dehydratase Tcd1 (predicted)","termid":"PBO:0017560"}


id: GO:0019000
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. (Was not defined before being made obsolete).","definition_xrefs":["PMID:12928502","PMID:12941691","PMID:12444964"],"gene_count":0,"genotype_count":0,"name":"obsolete endonuclease G activity (obsolete GO:0019000)","synonyms":[{"name":"endonuclease G activity","type":"exact"}],"termid":"GO:0019000"}


id: PBO:0028181
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_growth_on_selenite_ion","termid":"PBO:0028181"}


id: CHEBI:48080
data:
  {"annotation_feature_type":"gene","cv_name":"chebi_ontology","direct_ancestors":[{"relation_name":"is_a","term_name":"chemical entity","termid":"CHEBI:24431"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"brefeldin A","termid":"CHEBI:48080"}


id: GO:0102629
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: patuletin + S-adenosyl-L-methionine = quercetagetin 3',6-dimethyl ether + S-adenosyl-L-homocysteine + H+.","definition_xrefs":["EC:2.1.1.-","GOC:pz"],"direct_ancestors":[{"relation_name":"is_a","term_name":"methyltransferase activity","termid":"GO:0008168"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016741"}],"interesting_parent_ids":["GO:0016740","GO:0003824","GO:0016741","GO:0003674"],"is_obsolete":false,"name":"patuletin 3'-O-methyltransferase activity","secondary_identifiers":["MetaCyc:RXN-15534"],"termid":"GO:0102629"}


id: PBO:0017475
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-developmentally_related_to","termid":"PBO:0017475"}


id: GO:0004171
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: [eIF5A-precursor]-lysine + spermidine = [eIF5A-precursor]-deoxyhypusine + propane-1,3-diamine.","definition_xrefs":["EC:2.5.1.46"],"gene_count":0,"genotype_count":0,"name":"obsolete deoxyhypusine synthase activity (obsolete GO:0004171)","synonyms":[{"name":"[eIF-5A]-deoxyhypusine synthase","type":"related"},{"name":"deoxyhypusine synthase activity","type":"exact"}],"termid":"GO:0004171"}


id: GO:0044695
data:
  {"annotated_genes":["SJAG_04151","SJAG_00552","SJAG_01585","SJAG_02703","SJAG_03302","SJAG_01657"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[85195,88812,93996,104164,108978,112542],"is_not":false,"summary":null,"term":"GO:0044695"}]},"cv_name":"cellular_component","definition":"An E3 ubiquitin ligase complex localized to the ER and Golgi membrane. In fission yeast comprises Dsc1, 2, 3 and 4. Involved in the processes of fission yeast sre1 (human SREBP) transcriptional activator proteolytic cleavage, the multivesicular body (MVB) pathway, and a post-endoplasmic reticulum pathway for protein catabolism.","definition_xrefs":["GOC:mah","GOC:vw","PMID:21504829"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ubiquitin ligase complex","termid":"GO:0000151"},{"relation_name":"is_a","term_name":"membrane protein complex","termid":"GO:0098796"},{"relation_name":"part_of","term_name":"organelle membrane","termid":"GO:0031090"}],"gene_count":6,"genes_by_uniquename":{"SJAG_00552":null,"SJAG_01585":null,"SJAG_01657":null,"SJAG_02703":null,"SJAG_03302":null,"SJAG_04151":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0032991","GO:0005575"],"is_obsolete":false,"name":"Dsc E3 ubiquitin ligase complex","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0044695","terms_by_termid":{"GO:0044695":null}}


id: PBO:0064509
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA polymerase II subunit J","termid":"PBO:0064509"}


id: GO:1904865
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of beta-catenin-TCF complex assembly.","definition_xrefs":["GOC:TermGenie","GO_REF:0000058","GOC:bf","GOC:PARL"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of protein-containing complex assembly","termid":"GO:0031334"},{"relation_name":"is_a","term_name":"regulation of beta-catenin-TCF complex assembly","termid":"GO:1904863"},{"relation_name":"positively_regulates","term_name":"beta-catenin-TCF complex assembly","termid":"GO:1904837"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"positively_regulates","termid":"GO:0065003"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0065003"},{"rel_name":"positively_regulates","termid":"GO:0044085"},{"rel_name":"regulates","termid":"GO:0044085"}],"interesting_parent_ids":["GO:0065003","GO:0044085","GO:0008150"],"is_obsolete":false,"name":"positive regulation of beta-catenin-TCF complex assembly","synonyms":[{"name":"activation of beta-catenin-TCF complex assembly","type":"narrow"},{"name":"activation of beta-catenin-TCF complex formation","type":"narrow"},{"name":"activation of beta-catenin/LEF complex assembly","type":"narrow"},{"name":"activation of beta-catenin/LEF complex formation","type":"narrow"},{"name":"activation of beta-catenin/T-cell factor complex assembly","type":"related"},{"name":"activation of beta-catenin/T-cell factor complex formation","type":"related"},{"name":"activation of beta-catenin/lymphoid enhancer binding factor complex assembly","type":"related"},{"name":"activation of beta-catenin/lymphoid enhancer binding factor complex formation","type":"related"},{"name":"positive regulation of beta-catenin-TCF complex formation","type":"exact"},{"name":"positive regulation of beta-catenin/LEF complex assembly","type":"narrow"},{"name":"positive regulation of beta-catenin/LEF complex formation","type":"narrow"},{"name":"positive regulation of beta-catenin/T-cell factor complex assembly","type":"related"},{"name":"positive regulation of beta-catenin/T-cell factor complex formation","type":"related"},{"name":"positive regulation of beta-catenin/lymphoid enhancer binding factor complex assembly","type":"related"},{"name":"positive regulation of beta-catenin/lymphoid enhancer binding factor complex formation","type":"related"},{"name":"up regulation of beta-catenin-TCF complex assembly","type":"exact"},{"name":"up regulation of beta-catenin-TCF complex formation","type":"exact"},{"name":"up regulation of beta-catenin/LEF complex assembly","type":"narrow"},{"name":"up regulation of beta-catenin/LEF complex formation","type":"narrow"},{"name":"up regulation of beta-catenin/T-cell factor complex assembly","type":"related"},{"name":"up regulation of beta-catenin/T-cell factor complex formation","type":"related"},{"name":"up regulation of beta-catenin/lymphoid enhancer binding factor complex assembly","type":"related"},{"name":"up regulation of beta-catenin/lymphoid enhancer binding factor complex formation","type":"related"},{"name":"up-regulation of beta-catenin-TCF complex assembly","type":"exact"},{"name":"up-regulation of beta-catenin-TCF complex formation","type":"exact"},{"name":"up-regulation of beta-catenin/LEF complex assembly","type":"narrow"},{"name":"up-regulation of beta-catenin/LEF complex formation","type":"narrow"},{"name":"up-regulation of beta-catenin/T-cell factor complex assembly","type":"related"},{"name":"up-regulation of beta-catenin/T-cell factor complex formation","type":"related"},{"name":"up-regulation of beta-catenin/lymphoid enhancer binding factor complex assembly","type":"related"},{"name":"up-regulation of beta-catenin/lymphoid enhancer binding factor complex formation","type":"related"},{"name":"upregulation of beta-catenin-TCF complex assembly","type":"exact"},{"name":"upregulation of beta-catenin-TCF complex formation","type":"exact"},{"name":"upregulation of beta-catenin/LEF complex assembly","type":"narrow"},{"name":"upregulation of beta-catenin/LEF complex formation","type":"narrow"},{"name":"upregulation of beta-catenin/T-cell factor complex assembly","type":"related"},{"name":"upregulation of beta-catenin/T-cell factor complex formation","type":"related"},{"name":"upregulation of beta-catenin/lymphoid enhancer binding factor complex assembly","type":"related"},{"name":"upregulation of beta-catenin/lymphoid enhancer binding factor complex formation","type":"related"}],"termid":"GO:1904865"}


id: GO:0018076
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The acetylation of the N-terminal lysine of proteins.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"N-terminal protein amino acid acetylation","termid":"GO:0006474"},{"relation_name":"is_a","term_name":"peptidyl-lysine acetylation","termid":"GO:0018394"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0051604"}],"interesting_parent_ids":["GO:0008150","GO:0051604","GO:0010467"],"is_obsolete":false,"name":"N-terminal peptidyl-lysine acetylation","termid":"GO:0018076"}


id: PBO:0069454
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 719, pseudogene","termid":"PBO:0069454"}


id: PBO:0055811
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"LPGAT1 antisense RNA 1","termid":"PBO:0055811"}


id: PBO:0027801
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_growth_on_JM335","termid":"PBO:0027801"}


id: PR:Q02099
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A serine/threonine-protein kinase ATR that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO02635","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protein kinase rad3 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC216.05","secondary_identifiers":["UniProtKB:Q02099"],"synonyms":[{"name":"DNA repair protein rad3 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-ATR","type":"exact"}],"termid":"PR:Q02099"}


id: PBO:0028353
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_CTD_phosphatase_activity","termid":"PBO:0028353"}


id: PBO:0045306
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DNA methyltransferase 1","termid":"PBO:0045306"}


id: PBO:0056734
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mesoderm specific transcript pseudogene 3","termid":"PBO:0056734"}


id: GO:0009171
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of purine deoxyribonucleoside monophosphate, a compound consisting of a purine base linked to a deoxyribose sugar esterified with phosphate on the sugar.","definition_xrefs":["ISBN:0198506732","GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"purine nucleoside monophosphate biosynthetic process","termid":"GO:0009127"},{"relation_name":"is_a","term_name":"deoxyribonucleoside monophosphate biosynthetic process","termid":"GO:0009157"},{"relation_name":"is_a","term_name":"purine deoxyribonucleoside monophosphate metabolic process","termid":"GO:0009170"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0055086"}],"interesting_parent_ids":["GO:0008150","GO:0044281","GO:0055086"],"is_obsolete":false,"name":"purine deoxyribonucleoside monophosphate biosynthetic process","synonyms":[{"name":"purine deoxyribonucleoside monophosphate anabolism","type":"exact"},{"name":"purine deoxyribonucleoside monophosphate biosynthesis","type":"exact"},{"name":"purine deoxyribonucleoside monophosphate formation","type":"exact"},{"name":"purine deoxyribonucleoside monophosphate synthesis","type":"exact"}],"termid":"GO:0009171"}


id: GO:0018628
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: H+ + NADH + O2 + terephthalate = (3S,4R)-3,4-dihydroxycyclohexa-1,5-diene-1,4-dicarboxylate + NAD+.","definition_xrefs":["EC:1.14.12.15","RHEA:10312"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of two atoms of oxygen into one donor","termid":"GO:0016708"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016491"],"is_obsolete":false,"name":"terephthalate 1,2-dioxygenase activity","secondary_identifiers":["MetaCyc:1.14.12.15-RXN","KEGG_REACTION:R05148","UM-BBD_reactionID:r0150"],"synonyms":[{"name":"1,4-dicarboxybenzoate 1,2-dioxygenase activity","type":"related"},{"name":"benzene-1,4-dicarboxylate 1,2-dioxygenase activity","type":"related"},{"name":"benzene-1,4-dicarboxylate,NADH:oxygen oxidoreductase (1,2-hydroxylating)","type":"related"}],"termid":"GO:0018628"}


id: FYPO:0001911
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the glycosylation of one or more specific proteins, or of specific protein sites, occurs to a lower extent than normal. Protein glycosylation is the addition of a carbohydrate or carbohydrate derivative unit to a protein amino acid.","definition_xrefs":["GO:0006486","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal protein glycosylation during vegetative growth","termid":"FYPO:0001910"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0002494"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0002274"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0002274","FYPO:0005447","FYPO:0002494","FYPO:0000002","FYPO:0001985","FYPO:0001320"],"is_obsolete":false,"name":"decreased protein glycosylation during vegetative growth","synonyms":[{"name":"decreased protein glycosylation during mitotic cell cycle","type":"related"},{"name":"protein hypoglycosylation during vegetative growth","type":"exact"},{"name":"reduced protein glycosylation during vegetative growth","type":"exact"}],"termid":"FYPO:0001911"}


id: SO:0002108
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A species specific unprocessed pseudogene without a parent gene, as it has an active orthologue in another species.","definition_xrefs":["GENCODE:http://www.gencodegenes.org/gencode_biotypes.html"],"direct_ancestors":[{"relation_name":"is_a","term_name":"unitary_pseudogene","termid":"SO:0001759"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transcribed_unitary_pseudogene","synonyms":[{"name":"transcribed unitary pseudogene","type":"exact"}],"termid":"SO:0002108"}


id: FYPO:0005102
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype in which the amount of a protein found associated with chromatin at the mating type region is lower than normal when the cell is in the vegetative growth phase of the life cycle.","definition_xrefs":["PMID:19117951","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased protein level during vegetative growth","termid":"FYPO:0001324"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0006551"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0001985","FYPO:0006551","FYPO:0001320","FYPO:0000002"],"is_obsolete":false,"name":"decreased protein level at silent mating-type cassette","synonyms":[{"name":"decreased protein level at mating type region","type":"exact"},{"name":"decreased protein level at mating type region chromatin","type":"exact"},{"name":"decreased protein level at mating type region during mitotic cell cycle","type":"related"},{"name":"decreased protein level at mating type region during vegetative growth","type":"exact"},{"name":"decreased protein level at mating type region heterochromatin","type":"exact"},{"name":"reduced protein level at mating type region","type":"exact"}],"termid":"FYPO:0005102"}


id: GO:0072094
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Signaling at short range between cells of the ureteric bud terminus and the kidney mesenchyme that positively regulates the formation of the metanephric renal vesicle.","definition_xrefs":["GOC:mtg_kidney_jan10"],"direct_ancestors":[{"relation_name":"is_a","term_name":"renal vesicle induction","termid":"GO:0072034"},{"relation_name":"is_a","term_name":"positive regulation of metanephros development","termid":"GO:0072216"},{"relation_name":"positively_regulates","term_name":"metanephric renal vesicle formation","termid":"GO:0072093"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"metanephric renal vesicle induction","synonyms":[{"name":"positive regulation of metanephros formation","type":"broad"}],"termid":"GO:0072094"}


id: PBO:0055700
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"LLP homolog, long-term synaptic facilitation factor","termid":"PBO:0055700"}


id: FYPO:0001320
data:
  {"alleles_by_uniquename":{"SJAG_00028:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_00028","name":"rga6delta","uniquename":"SJAG_00028:allele-1"},"SJAG_00118:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_00118","name":"mid2delta","uniquename":"SJAG_00118:allele-1"},"SJAG_00266:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_00266","name":"atf1delta","uniquename":"SJAG_00266:allele-1"},"SJAG_00409:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_00409","name":"gpd1delta","uniquename":"SJAG_00409:allele-1"},"SJAG_00426:allele-1":{"allele_type":"amino_acid_mutation","description":"P363S","gene_uniquename":"SJAG_00426","name":"bbl1-P363S","uniquename":"SJAG_00426:allele-1"},"SJAG_00514:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_00514","name":"scd1delta","uniquename":"SJAG_00514:allele-1"},"SJAG_00610:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_00610","name":"pck2delta","uniquename":"SJAG_00610:allele-1"},"SJAG_00871:allele-1":{"allele_type":"amino_acid_mutation","description":"cut3-T19E","gene_uniquename":"SJAG_00871","name":"cut3-T19E","uniquename":"SJAG_00871:allele-1"},"SJAG_01050:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_01050","name":"nur1delta","uniquename":"SJAG_01050:allele-1"},"SJAG_01143:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_01143","name":"mid1delta","uniquename":"SJAG_01143:allele-1"},"SJAG_01143:allele-2":{"allele_type":"partial_amino_acid_deletion","description":"711-723","gene_uniquename":"SJAG_01143","name":"mid1-delta(711-723 a.a.)","uniquename":"SJAG_01143:allele-2"},"SJAG_01242:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_01242","name":"vps32delta","uniquename":"SJAG_01242:allele-1"},"SJAG_01330:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_01330","name":"mad2delta","uniquename":"SJAG_01330:allele-1"},"SJAG_01374:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_01374","name":"nup132delta","uniquename":"SJAG_01374:allele-1"},"SJAG_01745:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_01745","name":"lem2delta","uniquename":"SJAG_01745:allele-1"},"SJAG_01787:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_01787","name":"pck1delta","uniquename":"SJAG_01787:allele-1"},"SJAG_01794:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_01794","name":"scd2delta","uniquename":"SJAG_01794:allele-1"},"SJAG_01834:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_01834","name":"pom152delta","uniquename":"SJAG_01834:allele-1"},"SJAG_01906:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_01906","name":"nem1delta","uniquename":"SJAG_01906:allele-1"},"SJAG_01956:allele-1":{"allele_type":"amino_acid_mutation","description":"E405K ts","gene_uniquename":"SJAG_01956","name":"nuc2-1051","uniquename":"SJAG_01956:allele-1"},"SJAG_02013:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_02013","name":"pyp1delta","uniquename":"SJAG_02013:allele-1"},"SJAG_02252:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_02252","name":"ace2delta","uniquename":"SJAG_02252:allele-1"},"SJAG_02392:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_02392","name":"pom1delta","uniquename":"SJAG_02392:allele-1"},"SJAG_02592:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_02592","name":"sty1delta","uniquename":"SJAG_02592:allele-1"},"SJAG_02621:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_02621","name":"ago1delta","uniquename":"SJAG_02621:allele-1"},"SJAG_02763:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_02763","name":"ned1delta","uniquename":"SJAG_02763:allele-1"},"SJAG_02763:allele-2":{"allele_type":"amino_acid_mutation","description":"D422E,D424E","gene_uniquename":"SJAG_02763","name":"ned1cat","synonyms":[{"name":"Catalytic mutant","reference":"PMID:26774782","type":"exact"}],"uniquename":"SJAG_02763:allele-2"},"SJAG_02763:allele-3":{"allele_type":"amino_acid_mutation","description":"S235A; S651","gene_uniquename":"SJAG_02763","name":"ned1S235A/S651","synonyms":[{"name":"refractory to phosphorylation","reference":"PMID:26774782","type":"exact"}],"uniquename":"SJAG_02763:allele-3"},"SJAG_02763:allele-4":{"allele_type":"amino_acid_mutation","description":"S235E; S651E","gene_uniquename":"SJAG_02763","name":"ned1S235E/S651E","synonyms":[{"name":"phosphomimetic","reference":"PMID:26774782","type":"exact"}],"uniquename":"SJAG_02763:allele-4"},"SJAG_02763:allele-5":{"allele_type":"amino_acid_mutation","description":"S499E; S538E; T620E; T638E; 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phenotype","references_by_uniquename":{"PMID:21802294":null,"PMID:22300943":null,"PMID:23786411":null,"PMID:24184107":null,"PMID:24699070":null,"PMID:25318672":null,"PMID:25866389":null,"PMID:26774782":null,"PMID:27059155":null,"PMID:27678009":null,"PMID:28954740":null,"PMID:29566183":null,"PMID:30664646":null,"PMID:30726171":null,"PMID:31150379":null,"PMID:32109380":null,"PMID:32243490":null,"PMID:32915139":null,"PMID:33495454":null,"PMID:33791858":null,"PMID:34198697":null,"PMID:35226668":null,"PMID:36058798":null,"PMID:36695178":null,"PMID:37164017":null},"single_locus_annotated_genes":["SJAG_05207","SJAG_04489","SJAG_03449","SJAG_01050","SJAG_03351","SJAG_01330","SJAG_01834","SJAG_00028","SJAG_03783","SJAG_03444","SJAG_00514","SJAG_03689","SJAG_04522","SJAG_01242","SJAG_04697","SJAG_04883","SJAG_03048","SJAG_02392","SJAG_03581","SJAG_02819","SJAG_02796","SJAG_03596","SJAG_00610","SJAG_01745","SJAG_03891","SJAG_04551","SJAG_04280","SJAG_02252","SJAG_04284","SJAG_02592","SJAG_01374","SJAG_00266","SJAG_01956","SJAG_01794","SJAG_01906","SJAG_04312","SJAG_03453","SJAG_00118","SJAG_00426","SJAG_02763","SJAG_01787","SJAG_04464","SJAG_04703","SJAG_03940","SJAG_03250","SJAG_02013","SJAG_01143","SJAG_03892","SJAG_00409","SJAG_03143","SJAG_03575","SJAG_04332"],"single_locus_genotype_uniquenames":["vps4delta","Man1DHEH-man1DHEH-partial_amino_acid_deletion-expression-not_assayed_or_wild_type","Vps4-EQ-E233Q-amino_acid_mutation-expression-not_assayed_or_wild_type","vps32delta","pom152delta","wee1-G788E-G788E-amino_acid_mutation-expression-not_assayed_or_wild_type","vps4-ts-I307T_L327S-amino_acid_mutation-expression-not_assayed_or_wild_type","nem2delta","efc25delta","alx1delta","pyk1-A343T-A343T-amino_acid_mutation-expression-not_assayed_or_wild_type","ptp4delta","atf1delta","rga6delta","Pmk1Sj(ins82-105)-82-NITCIYDLDIIINPYNFNEVYIYEE-105-amino_acid_insertion-expression-not_assayed_or_wild_type","sst4delta","gpd1delta","pmk1delta","scd1delta","mid1delta","gms1delta","pim1-R152C-R152C-amino_acid_mutation-expression-not_assayed_or_wild_type","ras1delta","man1delta","ned1-5E-S499E__S538E__T620E__T638E__S651E-amino_acid_mutation-expression-not_assayed_or_wild_type","cut23-415-A186T_ts-amino_acid_mutation-expression-not_assayed_or_wild_type","mad2delta","mid2delta","lem2delta","pka1delta","rga4delta","ned1S235A_S651-S235A__S651-amino_acid_mutation-expression-not_assayed_or_wild_type","sty1delta","cmp7delta","ned1delta","nem1delta","wee1-as8-T582G-amino_acid_mutation-expression-not_assayed_or_wild_type","dcr1delta","ned1S235E_S651E-S235E__S651E-amino_acid_mutation-expression-not_assayed_or_wild_type","cdc25-D9-I30T,T572P-amino_acid_mutation-expression-not_assayed_or_wild_type","mid1-delta(711-723_a.a.)-711-723-partial_amino_acid_deletion-expression-not_assayed_or_wild_type","nur1delta","vps24delta","ace2delta","cdc15-A-L264P,P442T-amino_acid_mutation-expression-not_assayed_or_wild_type","bbl1-P363S-P363S-amino_acid_mutation-expression-not_assayed_or_wild_type","man1-1-488-man1-1-488-amino_acid_insertion_and_deletion-expression-not_assayed_or_wild_type","ned1cat-D422E,D424E-amino_acid_mutation-expression-not_assayed_or_wild_type","did4delta","agn1delta","pck2delta","for3delta","Pmk1Sp(delta82-105)-Pmk1_from_S._pombe_with_deleted_residues_82-105-partial_amino_acid_deletion-expression-not_assayed_or_wild_type","cdc2-1w-G146D-amino_acid_mutation-expression-not_assayed_or_wild_type","pom1delta","nup132delta","apc2-361-E548K_ts-amino_acid_mutation-expression-not_assayed_or_wild_type","sep1delta","nuc2-1051-E405K_ts-amino_acid_mutation-expression-not_assayed_or_wild_type","pck1delta","scd2delta","nup61delta","gef1delta","pyp1delta"],"synonyms":[{"name":"cell phenotype during vegetative growth","type":"exact"},{"name":"fission yeast vegetative cell phenotype","type":"exact"},{"name":"vegetative cell phenotype during mitotic cell cycle","type":"related"},{"name":"vegetative cell phenotype during vegetative growth","type":"exact"}],"termid":"FYPO:0001320","terms_by_termid":{"FYECO:0000004":null,"FYECO:0000005":null,"FYECO:0000006":null,"FYECO:0000102":null,"FYECO:0000126":null,"FYECO:0000137":null,"FYECO:0000162":null,"FYECO:0000207":null,"FYECO:0000248":null,"FYECO:0000338":null,"FYPO:0000026":null,"FYPO:0000118":null,"FYPO:0000198":null,"FYPO:0000231":null,"FYPO:0000324":null,"FYPO:0000356":null,"FYPO:0000595":null,"FYPO:0000596":null,"FYPO:0000618":null,"FYPO:0000619":null,"FYPO:0000644":null,"FYPO:0000648":null,"FYPO:0000671":null,"FYPO:0000729":null,"FYPO:0000731":null,"FYPO:0000815":null,"FYPO:0001007":null,"FYPO:0001038":null,"FYPO:0001122":null,"FYPO:0001132":null,"FYPO:0001327":null,"FYPO:0001369":null,"FYPO:0001489":null,"FYPO:0001556":null,"FYPO:0001784":null,"FYPO:0001838":null,"FYPO:0001877":null,"FYPO:0001971":null,"FYPO:0002026":null,"FYPO:0002033":null,"FYPO:0002227":null,"FYPO:0002380":null,"FYPO:0002870":null,"FYPO:0002998":null,"FYPO:0003315":null,"FYPO:0003657":null,"FYPO:0003727":null,"FYPO:0003751":null,"FYPO:0003779":null,"FYPO:0003780":null,"FYPO:0003946":null,"FYPO:0003973":null,"FYPO:0003976":null,"FYPO:0004105":null,"FYPO:0004165":null,"FYPO:0004205":null,"FYPO:0004295":null,"FYPO:0004318":null,"FYPO:0004573":null,"FYPO:0004574":null,"FYPO:0004683":null,"FYPO:0004695":null,"FYPO:0004890":null,"FYPO:0004982":null,"FYPO:0005503":null,"FYPO:0005957":null,"FYPO:0006433":null,"FYPO:0006557":null,"FYPO:0006616":null,"FYPO:0006989":null,"FYPO:0007073":null,"FYPO:0007177":null,"FYPO:0007701":null,"FYPO:0007770":null,"FYPO:0007771":null,"FYPO:0007772":null,"FYPO:0007783":null,"FYPO_EXT:0000001":null,"FYPO_EXT:0000002":null,"FYPO_EXT:0000003":null}}


id: PBO:0073653
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SIM bHLH transcription factor 1","termid":"PBO:0073653"}


id: PBO:0044320
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cytochrome c, somatic","termid":"PBO:0044320"}


id: PBO:0060982
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NGFR antisense RNA 1","termid":"PBO:0060982"}


id: PBO:0064193
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"phospholipase A and acyltransferase 1","termid":"PBO:0064193"}


id: GO:2000282
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of cellular amino acid biosynthetic process.","definition_xrefs":["GOC:obol"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of cellular amino acid metabolic process","termid":"GO:0006521"},{"relation_name":"is_a","term_name":"regulation of biosynthetic process","termid":"GO:0009889"},{"relation_name":"regulates","term_name":"amino acid biosynthetic process","termid":"GO:0008652"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0044281"},{"rel_name":"regulates","termid":"GO:0006520"}],"interesting_parent_ids":["GO:0044281","GO:0006520","GO:0008150"],"is_obsolete":false,"name":"regulation of cellular amino acid biosynthetic process","synonyms":[{"name":"regulation of amino acid biosynthetic process","type":"exact"},{"name":"regulation of cellular amino acid anabolism","type":"exact"},{"name":"regulation of cellular amino acid biosynthesis","type":"exact"},{"name":"regulation of cellular amino acid formation","type":"exact"},{"name":"regulation of cellular amino acid synthesis","type":"exact"}],"termid":"GO:2000282"}


id: GO:0070847
data:
  {"annotated_genes":["SJAG_03573","SJAG_00904","SJAG_04705","SJAG_00297","SJAG_02494","SJAG_02849","SJAG_03622","SJAG_04647"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[83679,98112,99573,102386,102518,104888,110876,115032],"is_not":false,"summary":null,"term":"GO:0070847"}]},"cv_name":"cellular_component","definition":"A protein complex that interacts with the carboxy-terminal domain of the largest subunit of RNA polymerase II and plays an active role in transducing the signal from a transcription factor to the transcriptional machinery. The core mediator complex has a stimulatory effect on basal transcription, and contains most of the same subdomains as the larger form of mediator complex -- a head domain comprising proteins known in Saccharomyces as Srb2, -4, and -5, Med6, -8, and -11, and Rox3 proteins; a middle domain comprising Med1, -4, and -7, Nut1 and -2, Cse2, Rgr1, Soh1, and Srb7 proteins; and a tail consisting of Gal11p, Med2p, Pgd1p, and Sin4p -- but lacks the regulatory subcomplex comprising Ssn2, -3, and -8, and Srb8 proteins. Metazoan core mediator complexes have similar modular structures and include homologs of yeast Srb and Med proteins.","definition_xrefs":["PMID:17870225","PMID:16168358","PMID:11454195"],"direct_ancestors":[{"relation_name":"is_a","term_name":"RNA polymerase II transcription regulator complex","termid":"GO:0090575"}],"gene_count":8,"genes_by_uniquename":{"SJAG_00297":null,"SJAG_00904":null,"SJAG_02494":null,"SJAG_02849":null,"SJAG_03573":null,"SJAG_03622":null,"SJAG_04647":null,"SJAG_04705":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005634"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0032991","GO:0005634","GO:0005575"],"is_obsolete":false,"name":"core mediator complex","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"C mediator complex","type":"exact"},{"name":"S mediator complex","type":"exact"}],"termid":"GO:0070847","terms_by_termid":{"GO:0070847":null}}


id: GO:0140060
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which the terminal anatomical structures of an axon are generated and organized into branches of specialised projections, or boutons. An axon is the long process of a neuron that conducts nerve impulses, usually away from the cell body to the terminal branches.","definition_xrefs":["GOC:bc","GOC:aruk","PMID:23764288"],"direct_ancestors":[{"relation_name":"is_a","term_name":"axonogenesis","termid":"GO:0007409"},{"relation_name":"is_a","term_name":"neuron projection arborization","termid":"GO:0140058"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"axon arborization","termid":"GO:0140060"}


id: PBO:0050014
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"major histocompatibility complex, class I, B","termid":"PBO:0050014"}


id: PBO:0091337
data:
  {"annotation_feature_type":"gene","cv_name":"name_description","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TRNA Adenosine Deaminase","termid":"PBO:0091337"}


id: PBO:0039406
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"anaphase promoting complex subunit 10","termid":"PBO:0039406"}


id: PR:Q9UUA2-2
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"An ATP-dependent DNA helicase pfh1 (Schizosaccharomyces pombe 972h-) that is a translation product of some mRNA giving rise to a protein with the amino acid sequence represented by UniProtKB:Q9UUA2-2.","definition_xrefs":["PRO:DNx","UniProtKB:Q9UUA2"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ATP-dependent DNA helicase pfh1 (Schizosaccharomyces pombe 972h-)","termid":"PR:Q9UUA2"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ATP-dependent DNA helicase pfh1 isoform Nuclear (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC1002.01","secondary_identifiers":["UniProtKB:Q9UUA2-2"],"synonyms":[{"name":"Spom972h-PIF1/iso:Nuclear","type":"exact"}],"termid":"PR:Q9UUA2-2"}


id: PBO:0017698
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NMS complex subunit Mis14","termid":"PBO:0017698"}


id: FYPO:0002405
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell morphology phenotype in which a vegetatively growing cell is viable and is curved along the long axis, and the cell diameter is larger than normal and the cell length is shorter than normal. In a curved cell, the long axis follows a smooth bend rather than a straight line.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"viable stubby vegetative cell","termid":"FYPO:0002106"},{"relation_name":"is_a","term_name":"viable curved vegetative cell","termid":"FYPO:0002112"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000005"},{"rel_name":"has_part","termid":"FYPO:0001320"},{"rel_name":"has_part","termid":"FYPO:0000005"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"has_part","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"has_part","termid":"FYPO:0000004"},{"rel_name":"is_a","termid":"FYPO:0000004"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0000005","FYPO:0001985","FYPO:0000002","FYPO:0000004"],"is_obsolete":false,"name":"viable curved stubby vegetative cell","synonyms":[{"name":"curved stubby viable cell","type":"exact"},{"name":"viable curved stubby cell during vegetative growth","type":"exact"},{"name":"viable curved stubby vegetative cell during mitotic cell cycle","type":"related"},{"name":"viable curved watermelon-shaped vegetative cell","type":"exact"}],"termid":"FYPO:0002405"}


id: PBO:0090078
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"serine/threonine protein phosphatase inhibitor, endosulfine Igo1","termid":"PBO:0090078"}


id: PBO:0089532
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DNA-binding transcription factor Pcr1","termid":"PBO:0089532"}


id: PBO:0068509
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U1 small nuclear 98, pseudogene","termid":"PBO:0068509"}


id: PBO:0056287
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mannosidase endo-alpha like","termid":"PBO:0056287"}


id: PBO:0076611
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TBC1 domain family member 29, pseudogene","termid":"PBO:0076611"}


id: PATO:0002460
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A structural quality inhering in a bearer by virtue of the bearer being smaller and contracted, expecially due to loss of moisture.","definition_xrefs":["PATOC:JL"],"direct_ancestors":[{"relation_name":"is_a","term_name":"structure","termid":"PATO:0000141"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"shriveled","termid":"PATO:0002460"}


id: PR:Q9P790
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A vacuolar protein sorting-associated protein 72 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx","PANTHER:PTHR13275:SF4","OMA:SCHPO02667"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SWR complex protein 2 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBP35G2.13c","secondary_identifiers":["UniProtKB:Q9P790"],"synonyms":[{"name":"Spom972h-VPS72","type":"exact"}],"termid":"PR:Q9P790"}


id: GO:0002732
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate, or extent of dendritic cell cytokine production.","definition_xrefs":["GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of leukocyte mediated immunity","termid":"GO:0002705"},{"relation_name":"is_a","term_name":"positive regulation of cytokine production involved in immune response","termid":"GO:0002720"},{"relation_name":"is_a","term_name":"regulation of dendritic cell cytokine production","termid":"GO:0002730"},{"relation_name":"positively_regulates","term_name":"dendritic cell cytokine production","termid":"GO:0002371"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"positively_regulates","termid":"GO:0010467"},{"rel_name":"regulates","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0010467","GO:0008150"],"is_obsolete":false,"name":"positive regulation of dendritic cell cytokine production","synonyms":[{"name":"activation of dendritic cell cytokine production","type":"narrow"},{"name":"stimulation of dendritic cell cytokine production","type":"narrow"},{"name":"up regulation of dendritic cell cytokine production","type":"exact"},{"name":"up-regulation of dendritic cell cytokine production","type":"exact"},{"name":"upregulation of dendritic cell cytokine production","type":"exact"}],"termid":"GO:0002732"}


id: GO:0043173
data:
  {"annotated_genes":["SJAG_01070","SJAG_01859","SJAG_04123","SJAG_03298","SJAG_04354","SJAG_04713","SJAG_04709","SJAG_06634","SJAG_00957","SJAG_04467","SJAG_03708","SJAG_00533"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[112986,89714],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0044209"},{"annotations":[89139,111064],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0044211"},{"annotations":[89934],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0032263"},{"annotations":[89936,97970],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0032264"},{"annotations":[85228],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0034355"},{"annotations":[86850,85229,105795],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0019358"},{"annotations":[84675,83692,88145,89140,111066],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0044206"},{"annotations":[89938],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0032265"}]},"cv_name":"biological_process","definition":"Any process which produces a nucleotide, a compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the glycose moiety, from derivatives of it without de novo synthesis.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nucleotide biosynthetic process","termid":"GO:0009165"},{"relation_name":"is_a","term_name":"cellular metabolic compound salvage","termid":"GO:0043094"}],"gene_count":12,"genes_by_uniquename":{"SJAG_00533":null,"SJAG_00957":null,"SJAG_01070":null,"SJAG_01859":null,"SJAG_03298":null,"SJAG_03708":null,"SJAG_04123":null,"SJAG_04354":null,"SJAG_04467":null,"SJAG_04709":null,"SJAG_04713":null,"SJAG_06634":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0055086"}],"interesting_parent_ids":["GO:0055086","GO:0008150","GO:0044281"],"is_obsolete":false,"name":"nucleotide salvage","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["Wikipedia:Nucleotide_salvage"],"termid":"GO:0043173","terms_by_termid":{"GO:0019358":null,"GO:0032263":null,"GO:0032264":null,"GO:0032265":null,"GO:0034355":null,"GO:0044206":null,"GO:0044209":null,"GO:0044211":null}}


id: PBO:0083224
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Dubious open reading frame; unlikely to encode a functional protein, based on available experimental and comparative sequence data; completely overlaps with SRB8/YCR081W; identified by gene-trapping, microarray expression analysis, and genome-wide homology searching","termid":"PBO:0083224"}


id: PBO:0065625
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protein tyrosine phosphatase non-receptor type 3","termid":"PBO:0065625"}


id: PBO:0039037
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ArfGAP with GTPase domain, ankyrin repeat and PH domain 14, pseudogene","termid":"PBO:0039037"}


id: PBO:0038937
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"alcohol dehydrogenase 5 (class III), chi polypeptide","termid":"PBO:0038937"}


id: GO:0009548
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The portion of the plasma membrane surrounding a plasmodesma.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular anatomical entity","termid":"GO:0110165"},{"relation_name":"part_of","term_name":"plasma membrane","termid":"GO:0005886"},{"relation_name":"part_of","term_name":"plasmodesma","termid":"GO:0009506"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005886"}],"interesting_parent_ids":["GO:0005886","GO:0005575"],"is_obsolete":false,"name":"plasmodesmatal plasma membrane","termid":"GO:0009548"}


id: PATO:0000634
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A spatial pattern inhering in a bearer by virtue of the bearer's involvement of only one part or side.","definition_xrefs":["WordNet:WordNet"],"direct_ancestors":[{"relation_name":"is_a","term_name":"spatial pattern","termid":"PATO:0000060"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"unilateral","termid":"PATO:0000634"}


id: PBO:0054499
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1899","termid":"PBO:0054499"}


id: PBO:0005204
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"exocyst complex subunit Sec15 (predicted)","termid":"PBO:0005204"}


id: PR:O94570
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A valine--pyruvate aminotransferase that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx","OMA:SCHPO02405"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"aromatic amino acid aminotransferase C1773.13 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC1773.13","secondary_identifiers":["UniProtKB:O94570"],"synonyms":[{"name":"Spom972h-avtA","type":"exact"}],"termid":"PR:O94570"}


id: GO:0070104
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that decreases the rate, frequency or extent of an interleukin-6-mediated signaling pathway.","definition_xrefs":["GOC:mah","GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of cytokine-mediated signaling pathway","termid":"GO:0001960"},{"relation_name":"is_a","term_name":"regulation of interleukin-6-mediated signaling pathway","termid":"GO:0070103"},{"relation_name":"negatively_regulates","term_name":"interleukin-6-mediated signaling pathway","termid":"GO:0070102"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"negatively_regulates","termid":"GO:0023052"},{"rel_name":"regulates","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"negative regulation of interleukin-6-mediated signaling pathway","synonyms":[{"name":"negative regulation of IL-6-mediated signaling pathway","type":"exact"},{"name":"negative regulation of interleukin-6-mediated signalling pathway","type":"exact"}],"termid":"GO:0070104"}


id: PBO:0002138
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sequence orphan Slt1","termid":"PBO:0002138"}


id: GO:0033640
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process in which an organism modulates a change in state or activity of a host cell or organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating an increase or decrease in the concentration of solutes outside the organism or cell. The host is defined as the larger of the organisms involved in a symbiotic interaction.","definition_xrefs":["GOC:pamgo_curators"],"gene_count":0,"genotype_count":0,"name":"obsolete modulation by symbiont of host response to osmotic stress (obsolete GO:0033640)","termid":"GO:0033640"}


id: GO:0097137
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A heterodimeric protein complex consisting of BAD and BCL-xl, members of the Bcl-2 family of anti- and proapoptotic regulators.","definition_xrefs":["GOC:so","PMID:14634621"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Bcl-2 family protein complex","termid":"GO:0097136"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0032991","GO:0005575"],"is_obsolete":false,"name":"BAD-BCL-xl complex","termid":"GO:0097137"}


id: GO:0007620
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The act of sexual union between male and female, involving the transfer of sperm.","definition_xrefs":["ISBN:0721662544"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mating behavior","termid":"GO:0007617"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"copulation","termid":"GO:0007620"}


id: PBO:0035976
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_NEDD8-specific_protease_activity","termid":"PBO:0035976"}


id: GO:2000765
data:
  {"annotated_genes":["SJAG_16454","SJAG_02026","SJAG_02072","SJAG_02638","SJAG_04383","SJAG_05000","SJAG_01079","SJAG_00423","SJAG_02043","SJAG_00690","SJAG_03501","SJAG_04544","SJAG_04085","SJAG_04291","SJAG_03869","SJAG_00251","SJAG_02592","SJAG_01942","SJAG_04130","SJAG_02723","SJAG_00786","SJAG_00600","SJAG_04873","SJAG_04159","SJAG_00169","SJAG_02285","SJAG_02467","SJAG_01047","SJAG_04890","SJAG_01058"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[86469,92254,92387,95603,96423,96871,98734,101397,105882,107325,108560,112968,113581],"is_not":false,"summary":null,"term":"GO:2000765"},{"annotations":[111004,91770,114331,95599],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:2000766"},{"annotations":[105848,108321,87486],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1904689"},{"annotations":[111756,95492,88992,88693,90540,105849],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1990625"},{"annotations":[84791,102810,113257],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:2000767"},{"annotations":[100120,99488,91398],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1990611"}]},"cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of cytoplasmic translation.","definition_xrefs":["GOC:obol"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of translation","termid":"GO:0006417"},{"relation_name":"regulates","term_name":"cytoplasmic translation","termid":"GO:0002181"}],"gene_count":30,"genes_by_uniquename":{"SJAG_00169":null,"SJAG_00251":null,"SJAG_00423":null,"SJAG_00600":null,"SJAG_00690":null,"SJAG_00786":null,"SJAG_01047":null,"SJAG_01058":null,"SJAG_01079":null,"SJAG_01942":null,"SJAG_02026":null,"SJAG_02043":null,"SJAG_02072":null,"SJAG_02285":null,"SJAG_02467":null,"SJAG_02592":null,"SJAG_02638":null,"SJAG_02723":null,"SJAG_03501":null,"SJAG_03869":null,"SJAG_04085":null,"SJAG_04130":null,"SJAG_04159":null,"SJAG_04291":null,"SJAG_04383":null,"SJAG_04544":null,"SJAG_04873":null,"SJAG_04890":null,"SJAG_05000":null,"SJAG_16454":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0010467"},{"rel_name":"regulates","termid":"GO:0002181"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0002181","GO:0010467","GO:0008150"],"is_obsolete":false,"name":"regulation of cytoplasmic translation","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:2000765","terms_by_termid":{"GO:1904689":null,"GO:1990611":null,"GO:1990625":null,"GO:2000765":null,"GO:2000766":null,"GO:2000767":null}}


id: FYPO:0006994
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which chromatin silencing at centromere outer repeat regions is increased at the left outer repeat region (otr1L) of the centromere.","definition_xrefs":["PomBase:mah","PMID:26518661"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased chromatin silencing at centromere outer repeat","termid":"FYPO:0006299"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0006551"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0000002","FYPO:0001320","FYPO:0006551","FYPO:0001985"],"is_obsolete":false,"name":"increased chromatin silencing at centromere otr1L","synonyms":[{"name":"increased centromere outer repeat region chromatin silencing at otr1L","type":"exact"},{"name":"increased chromatin silencing at centromere otr1L during mitotic cell cycle","type":"related"},{"name":"increased chromatin silencing at centromere otr1L during vegetative growth","type":"exact"},{"name":"increased chromatin silencing at centromere otr1L region","type":"exact"},{"name":"increased chromatin silencing at centromeric otr1L","type":"exact"},{"name":"increased chromatin silencing at pericentric region otr1L","type":"related"},{"name":"increased chromatin silencing at pericentromeric region otr1L","type":"related"},{"name":"increased heterochromatic silencing at centromere otr1L","type":"exact"},{"name":"increased heterochromatin silencing at centromere otr1L","type":"exact"}],"termid":"FYPO:0006994"}


id: PBO:0039215
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"aldo-keto reductase family 1 member C6, pseudogene","termid":"PBO:0039215"}


id: PBO:0075938
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SH3 and cysteine rich domain","termid":"PBO:0075938"}


id: GO:0035406
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The modification of histones by addition of a phosphate group to a tyrosine residue.","definition_xrefs":["GOC:bf"],"gene_count":0,"genotype_count":0,"name":"obsolete histone-tyrosine phosphorylation (obsolete GO:0035406)","synonyms":[{"name":"histone tyrosine phosphorylation","type":"exact"}],"termid":"GO:0035406"}


id: PBO:0045375
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dolichyl-phosphate mannosyltransferase subunit 1, catalytic","termid":"PBO:0045375"}


id: PBO:0040525
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"antizyme inhibitor 2","termid":"PBO:0040525"}


id: PBO:0051125
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"immunoglobulin heavy variable 1/OR16-3 (pseudogene)","termid":"PBO:0051125"}


id: PBO:0088004
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Type 2C protein phosphatase (PP2C); dephosphorylates Hog1p, inactivating osmosensing MAPK cascade; involved in Fus3p activation during pheromone response; deletion affects precursor tRNA splicing, mitochondrial inheritance, and sporulation","termid":"PBO:0088004"}


id: PBO:0045517
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"D-aminoacyl-tRNA deacylase 2","termid":"PBO:0045517"}


id: PBO:0071938
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein S4X pseudogene 15","termid":"PBO:0071938"}


id: PBO:0002453
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"UBX domain protein Ubx2","termid":"PBO:0002453"}


id: PBO:0035727
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_replication_fork_pausing","termid":"PBO:0035727"}


id: GO:0002806
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate, or extent of antimicrobial peptide biosynthesis.","definition_xrefs":["GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of antimicrobial peptide production","termid":"GO:0002785"},{"relation_name":"is_a","term_name":"regulation of antimicrobial peptide biosynthetic process","termid":"GO:0002805"},{"relation_name":"negatively_regulates","term_name":"antimicrobial peptide biosynthetic process","termid":"GO:0002777"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"negatively_regulates","termid":"GO:0010467"},{"rel_name":"regulates","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0008150","GO:0010467"],"is_obsolete":false,"name":"negative regulation of antimicrobial peptide biosynthetic process","synonyms":[{"name":"down regulation of antimicrobial peptide biosynthetic process","type":"exact"},{"name":"down-regulation of antimicrobial peptide biosynthetic process","type":"exact"},{"name":"downregulation of antimicrobial peptide biosynthetic process","type":"exact"},{"name":"inhibition of antimicrobial peptide biosynthetic process","type":"narrow"}],"termid":"GO:0002806"}


id: FYECO:0000080
data:
  {"annotation_feature_type":"gene","cv_name":"fission_yeast_phenotype_condition","definition":"Any experimental condition that describes a rich growth medium, i.e. one in which not all constituent substances and their concentrations are specified, and some are present in excess.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"grouping growth medium","termid":"FYECO:0000009"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"grouping rich medium","termid":"FYECO:0000080"}


id: PBO:0056847
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"matrix Gla protein","termid":"PBO:0056847"}


id: PBO:0066329
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RCAN2 divergent transcript","termid":"PBO:0066329"}


id: GO:0062112
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of a fatty acid primary amide.","definition_xrefs":["PMID:10079066","PMID:15952893"],"direct_ancestors":[{"relation_name":"is_a","term_name":"amide biosynthetic process","termid":"GO:0043604"},{"relation_name":"is_a","term_name":"fatty acid primary amide metabolic process","termid":"GO:0062126"},{"relation_name":"is_a","term_name":"organonitrogen compound biosynthetic process","termid":"GO:1901566"},{"relation_name":"is_a","term_name":"fatty acid derivative biosynthetic process","termid":"GO:1901570"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006629"}],"interesting_parent_ids":["GO:0006629","GO:0008150"],"is_obsolete":false,"name":"fatty acid primary amide biosynthetic process","synonyms":[{"name":"FAPA biosynthesis","type":"exact"},{"name":"FAPA biosynthetic process","type":"exact"},{"name":"fatty acid amide biosynthesis","type":"exact"}],"termid":"GO:0062112"}


id: GO:0048304
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of isotype switching to IgG isotypes.","definition_xrefs":["GOC:jid"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of isotype switching","termid":"GO:0045830"},{"relation_name":"is_a","term_name":"regulation of isotype switching to IgG isotypes","termid":"GO:0048302"},{"relation_name":"positively_regulates","term_name":"isotype switching to IgG isotypes","termid":"GO:0048291"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0006259"},{"rel_name":"positively_regulates","termid":"GO:0010467"},{"rel_name":"regulates","termid":"GO:0006310"},{"rel_name":"positively_regulates","termid":"GO:0006259"},{"rel_name":"regulates","termid":"GO:0010467"},{"rel_name":"positively_regulates","termid":"GO:0006310"}],"interesting_parent_ids":["GO:0006259","GO:0010467","GO:0006310","GO:0008150"],"is_obsolete":false,"name":"positive regulation of isotype switching to IgG isotypes","synonyms":[{"name":"activation of isotype switching to IgG isotypes","type":"narrow"},{"name":"positive regulation of class switch recombination to IgG isotypes","type":"exact"},{"name":"positive regulation of class switching to IgG isotypes","type":"exact"},{"name":"positive regulation of isotype switch recombination to IgG isotypes","type":"exact"},{"name":"stimulation of isotype switching to IgG isotypes","type":"narrow"},{"name":"up regulation of isotype switching to IgG isotypes","type":"exact"},{"name":"up-regulation of isotype switching to IgG isotypes","type":"exact"},{"name":"upregulation of isotype switching to IgG isotypes","type":"exact"}],"termid":"GO:0048304"}


id: PBO:0063138
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"parvin gamma","termid":"PBO:0063138"}


id: PBO:0052805
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"keratin 72","termid":"PBO:0052805"}


id: PBO:0058267
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 4645","termid":"PBO:0058267"}


id: GO:0002086
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process in which force is generated within involuntary skeletal muscle tissue, resulting in a change in muscle geometry. This process occurs in the diaphragm. Force generation involves a chemo-mechanical energy conversion step that is carried out by the actin/myosin complex activity, which generates force through ATP hydrolysis. The diaphragm is a striated muscle that is necessary for the process of respiratory gaseous exchange.","definition_xrefs":["GOC:mtg_muscle","GOC:dph","PMID:12458206"],"direct_ancestors":[{"relation_name":"is_a","term_name":"involuntary skeletal muscle contraction","termid":"GO:0003011"},{"relation_name":"is_a","term_name":"respiratory system process","termid":"GO:0003016"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"diaphragm contraction","termid":"GO:0002086"}


id: FYPO:0001030
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A phenotype in which vegetative cell population growth is normal (i.e. indistinguishable from wild type) in a medium containing dithiothreitol.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal vegetative cell population growth","termid":"FYPO:0001357"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000003"},{"rel_name":"is_a","termid":"FYPO:0000139"},{"rel_name":"is_a","termid":"FYPO:0002060"},{"rel_name":"is_a","termid":"FYPO:0002057"},{"rel_name":"is_a","termid":"FYPO:0002058"},{"rel_name":"is_a","termid":"FYPO:0000257"}],"interesting_parent_ids":["FYPO:0002060","FYPO:0000139","FYPO:0002057","FYPO:0002058","FYPO:0000257","FYPO:0000003"],"is_obsolete":false,"name":"normal growth on dithiothreitol","synonyms":[{"name":"normal cell population growth in presence of dithiothreitol","type":"exact"},{"name":"normal cell population growth on 1,4-dithiothreitol","type":"exact"},{"name":"normal cell population growth on DTT","type":"exact"},{"name":"normal cell population growth on dithiothreitol","type":"exact"},{"name":"normal cellular response to dithiothreitol","type":"related"},{"name":"normal vegetative cell population growth on dithiothreitol","type":"exact"}],"termid":"FYPO:0001030"}


id: GO:0007143
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A cell cycle process by which the cell nucleus divides as part of a meiotic cell cycle in the female germline.","definition_xrefs":["GOC:ems","GOC:dph","GOC:vw","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"meiotic nuclear division","termid":"GO:0140013"},{"relation_name":"part_of","term_name":"female gamete generation","termid":"GO:0007292"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0140013"},{"rel_name":"part_of","termid":"GO:0007049"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0007049","GO:0140013","GO:0008150"],"is_obsolete":false,"name":"female meiotic nuclear division","synonyms":[{"name":"female meiosis","type":"broad"},{"name":"female meiotic division","type":"broad"}],"termid":"GO:0007143"}


id: PBO:0083726
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Essential 121 kDa subunit of the exocyst complex; the exocyst mediates polarized targeting and tethering of post-Golgi secretory vesicles to active sites of exocytosis at the plasma membrane prior to SNARE-mediated fusion; involved in ER and Golgi inheritance in small buds; relocalizes away from bud neck upon DNA replication stress","termid":"PBO:0083726"}


id: GO:0002747
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Antigen processing and presentation which is initiated by uptake of antigen via phagocytosis.","definition_xrefs":["ISBN:0781735149","GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"antigen processing and presentation","termid":"GO:0019882"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"antigen processing and presentation following phagocytosis","termid":"GO:0002747"}


id: GO:0031176
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the endohydrolysis of (1->4)-beta-D-xylosidic linkages in xylans.","definition_xrefs":["EC:3.2.1.8"],"direct_ancestors":[{"relation_name":"is_a","term_name":"xylanase activity","termid":"GO:0097599"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016798"},{"rel_name":"is_a","termid":"GO:0016787"}],"interesting_parent_ids":["GO:0016787","GO:0003824","GO:0003674","GO:0016798"],"is_obsolete":false,"name":"endo-1,4-beta-xylanase activity","secondary_identifiers":["MetaCyc:3.2.1.8-RXN"],"synonyms":[{"name":"1,4-beta-D-xylan xylanohydrolase activity","type":"related"},{"name":"1,4-beta-xylan xylanohydrolase activity","type":"related"},{"name":"beta-1,4-xylan xylanohydrolase activity","type":"related"},{"name":"beta-1,4-xylanase activity","type":"related"},{"name":"beta-D-xylanase activity","type":"related"},{"name":"beta-xylanase activity","type":"related"},{"name":"endo-(1,4)-beta-xylanase(1,4)-beta-xylan 4-xylanohydrolase activity","type":"related"},{"name":"endo-(1->4)-beta-xylanase(1->4)-beta-xylan 4-xylanohydrolase activity","type":"related"},{"name":"endo-1,4-beta-D-xylanase activity","type":"related"},{"name":"endo-1,4-xylanase activity","type":"related"},{"name":"endo-beta-1,4-xylanase activity","type":"related"},{"name":"xylanase","type":"broad"}],"termid":"GO:0031176"}


id: GO:0003808
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the degradation of blood coagulation factors Va and VIIIa.","definition_xrefs":["GOC:curators"],"gene_count":0,"genotype_count":0,"name":"obsolete protein C (activated) activity (obsolete GO:0003808)","synonyms":[{"name":"GSAPC","type":"related"},{"name":"activated blood coagulation factor XIV activity","type":"related"},{"name":"activated protein C","type":"related"},{"name":"autoprothrombin II-A","type":"related"},{"name":"autoprothrombin IIA activity","type":"related"},{"name":"blood-coagulation factor XIVa","type":"related"},{"name":"protein C (activated) activity","type":"exact"},{"name":"protein Ca","type":"related"}],"termid":"GO:0003808"}


id: PR:O14104
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- lys12 gene.","definition_xrefs":["UniProtKB:O14104","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"homoisocitrate dehydrogenase (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC31G5.04","synonyms":[{"name":"HICDH (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-lys12","type":"exact"}],"termid":"PR:O14104"}


id: GO:0106032
data:
  {"annotated_genes":["SJAG_04754","SJAG_03572","SJAG_00088"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[91533,102384,110456],"is_not":false,"summary":null,"term":"GO:0106032"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: uridine in snRNA = pseudouridine in snRNA. Conversion of uridine in an snRNA molecule to pseudouridine by rotation of the C1'-N-1 glycosidic bond of uridine in RNA to a C1'-C5.","definition_xrefs":["PMID:28432181","RHEA:51124"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pseudouridine synthase activity","termid":"GO:0009982"},{"relation_name":"is_a","term_name":"catalytic activity, acting on RNA","termid":"GO:0140098"}],"gene_count":3,"genes_by_uniquename":{"SJAG_00088":null,"SJAG_03572":null,"SJAG_04754":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016853"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0140098"}],"interesting_parent_ids":["GO:0140098","GO:0016853","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"snRNA pseudouridine synthase activity","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0106032","terms_by_termid":{"GO:0106032":null}}


id: PBO:0076968
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TGFB induced factor homeobox 2 like Y-linked","termid":"PBO:0076968"}


id: PBO:0109090
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sperm microtubule inner protein 4","termid":"PBO:0109090"}


id: PBO:0091661
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DNA-binding transcription factor Cha4","termid":"PBO:0091661"}


id: GO:1901671
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of superoxide dismutase activity.","definition_xrefs":["GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of oxidoreductase activity","termid":"GO:0051353"},{"relation_name":"is_a","term_name":"regulation of superoxide dismutase activity","termid":"GO:1901668"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of superoxide dismutase activity","synonyms":[{"name":"up-regulation of SOD-4","type":"related"},{"name":"up-regulation of SODF","type":"related"},{"name":"up-regulation of SODS","type":"related"},{"name":"up-regulation of SOD-2","type":"related"},{"name":"up-regulation of SOD-3","type":"related"},{"name":"activation of Cu,Zn-SOD","type":"related"},{"name":"activation of Cu-Zn superoxide dismutase activity","type":"narrow"},{"name":"activation of Fe-SOD","type":"related"},{"name":"activation of Mn, Fe superoxide dismutase","type":"narrow"},{"name":"activation of Mn-SOD","type":"related"},{"name":"activation of SOD","type":"related"},{"name":"activation of SOD-1","type":"related"},{"name":"activation of SOD-2","type":"related"},{"name":"activation of SOD-3","type":"related"},{"name":"activation of SOD-4","type":"related"},{"name":"activation of SODF","type":"related"},{"name":"activation of SODS","type":"related"},{"name":"activation of copper, zinc superoxide dismutase activity","type":"narrow"},{"name":"activation of cuprein","type":"related"},{"name":"activation of cytocuprein","type":"related"},{"name":"activation of erythrocuprein","type":"related"},{"name":"activation of ferrisuperoxide dismutase activity","type":"narrow"},{"name":"activation of hemocuprein","type":"related"},{"name":"activation of hepatocuprein","type":"related"},{"name":"activation of iron superoxide dismutase activity","type":"narrow"},{"name":"activation of iron superoxide oxidoreductase","type":"related"},{"name":"activation of manganese superoxide dismutase activity","type":"narrow"},{"name":"activation of manganese superoxide oxidoreductase","type":"related"},{"name":"activation of nickel superoxide dismutase activity","type":"narrow"},{"name":"activation of nickel superoxide oxidoreductase","type":"related"},{"name":"activation of superoxide dismutase I","type":"related"},{"name":"activation of superoxide dismutase II","type":"related"},{"name":"activation of superoxide dismutase activity","type":"narrow"},{"name":"activation of superoxide:superoxide oxidoreductase activity","type":"exact"},{"name":"activation of zinc superoxide oxidoreductase","type":"related"},{"name":"positive regulation of Cu,Zn-SOD","type":"related"},{"name":"positive regulation of Cu-Zn superoxide dismutase activity","type":"narrow"},{"name":"positive regulation of Fe-SOD","type":"related"},{"name":"positive regulation of Mn, Fe superoxide dismutase","type":"narrow"},{"name":"positive regulation of Mn-SOD","type":"related"},{"name":"positive regulation of SOD","type":"related"},{"name":"positive regulation of SOD-1","type":"related"},{"name":"positive regulation of SOD-2","type":"related"},{"name":"positive regulation of SOD-3","type":"related"},{"name":"positive regulation of SOD-4","type":"related"},{"name":"positive regulation of SODF","type":"related"},{"name":"positive regulation of SODS","type":"related"},{"name":"positive regulation of copper, zinc superoxide dismutase activity","type":"narrow"},{"name":"positive regulation of cuprein","type":"related"},{"name":"positive regulation of cytocuprein","type":"related"},{"name":"positive regulation of erythrocuprein","type":"related"},{"name":"positive regulation of ferrisuperoxide dismutase activity","type":"narrow"},{"name":"positive regulation of hemocuprein","type":"related"},{"name":"positive regulation of hepatocuprein","type":"related"},{"name":"positive regulation of iron superoxide dismutase activity","type":"narrow"},{"name":"positive regulation of iron superoxide oxidoreductase","type":"related"},{"name":"positive regulation of manganese superoxide dismutase activity","type":"narrow"},{"name":"positive regulation of manganese superoxide oxidoreductase","type":"related"},{"name":"positive regulation of nickel superoxide dismutase activity","type":"narrow"},{"name":"positive regulation of nickel superoxide oxidoreductase","type":"related"},{"name":"positive regulation of superoxide dismutase I","type":"related"},{"name":"positive regulation of superoxide dismutase II","type":"related"},{"name":"positive regulation of superoxide:superoxide oxidoreductase activity","type":"exact"},{"name":"positive regulation of zinc superoxide oxidoreductase","type":"related"},{"name":"up regulation of Cu,Zn-SOD","type":"related"},{"name":"up regulation of Cu-Zn superoxide dismutase activity","type":"narrow"},{"name":"up regulation of Fe-SOD","type":"related"},{"name":"up regulation of Mn, Fe superoxide dismutase","type":"narrow"},{"name":"up regulation of Mn-SOD","type":"related"},{"name":"up regulation of SOD","type":"related"},{"name":"up regulation of SOD-1","type":"related"},{"name":"up regulation of SOD-2","type":"related"},{"name":"up regulation of SOD-3","type":"related"},{"name":"up regulation of SOD-4","type":"related"},{"name":"up regulation of SODF","type":"related"},{"name":"up regulation of SODS","type":"related"},{"name":"up regulation of copper, zinc superoxide dismutase activity","type":"narrow"},{"name":"up regulation of cuprein","type":"related"},{"name":"up regulation of cytocuprein","type":"related"},{"name":"up regulation of erythrocuprein","type":"related"},{"name":"up regulation of ferrisuperoxide dismutase activity","type":"narrow"},{"name":"up regulation of hemocuprein","type":"related"},{"name":"up regulation of hepatocuprein","type":"related"},{"name":"up regulation of iron superoxide dismutase activity","type":"narrow"},{"name":"up regulation of iron superoxide oxidoreductase","type":"related"},{"name":"up regulation of manganese superoxide dismutase activity","type":"narrow"},{"name":"up regulation of manganese superoxide oxidoreductase","type":"related"},{"name":"up regulation of nickel superoxide dismutase activity","type":"narrow"},{"name":"up regulation of nickel superoxide oxidoreductase","type":"related"},{"name":"up regulation of superoxide dismutase I","type":"related"},{"name":"up regulation of superoxide dismutase II","type":"related"},{"name":"up regulation of superoxide dismutase activity","type":"exact"},{"name":"up regulation of superoxide:superoxide oxidoreductase activity","type":"exact"},{"name":"up regulation of zinc superoxide oxidoreductase","type":"related"},{"name":"up-regulation of Cu,Zn-SOD","type":"related"},{"name":"up-regulation of Cu-Zn superoxide dismutase activity","type":"narrow"},{"name":"up-regulation of Fe-SOD","type":"related"},{"name":"up-regulation of Mn, Fe superoxide dismutase","type":"narrow"},{"name":"up-regulation of Mn-SOD","type":"related"},{"name":"up-regulation of SOD","type":"related"},{"name":"up-regulation of SOD-1","type":"related"},{"name":"up-regulation of copper, zinc superoxide dismutase activity","type":"narrow"},{"name":"up-regulation of cuprein","type":"related"},{"name":"up-regulation of cytocuprein","type":"related"},{"name":"up-regulation of erythrocuprein","type":"related"},{"name":"up-regulation of ferrisuperoxide dismutase activity","type":"narrow"},{"name":"up-regulation of hemocuprein","type":"related"},{"name":"up-regulation of hepatocuprein","type":"related"},{"name":"up-regulation of iron superoxide dismutase activity","type":"narrow"},{"name":"up-regulation of iron superoxide oxidoreductase","type":"related"},{"name":"up-regulation of manganese superoxide dismutase activity","type":"narrow"},{"name":"up-regulation of manganese superoxide oxidoreductase","type":"related"},{"name":"up-regulation of nickel superoxide dismutase activity","type":"narrow"},{"name":"up-regulation of nickel superoxide oxidoreductase","type":"related"},{"name":"up-regulation of superoxide dismutase I","type":"related"},{"name":"up-regulation of superoxide dismutase II","type":"related"},{"name":"up-regulation of superoxide dismutase activity","type":"exact"},{"name":"up-regulation of superoxide:superoxide oxidoreductase activity","type":"exact"},{"name":"up-regulation of zinc superoxide oxidoreductase","type":"related"},{"name":"upregulation of Cu,Zn-SOD","type":"related"},{"name":"upregulation of Cu-Zn superoxide dismutase activity","type":"narrow"},{"name":"upregulation of Fe-SOD","type":"related"},{"name":"upregulation of Mn, Fe superoxide dismutase","type":"narrow"},{"name":"upregulation of Mn-SOD","type":"related"},{"name":"upregulation of SOD","type":"related"},{"name":"upregulation of SOD-1","type":"related"},{"name":"upregulation of SOD-2","type":"related"},{"name":"upregulation of SOD-3","type":"related"},{"name":"upregulation of SOD-4","type":"related"},{"name":"upregulation of SODF","type":"related"},{"name":"upregulation of SODS","type":"related"},{"name":"upregulation of copper, zinc superoxide dismutase activity","type":"narrow"},{"name":"upregulation of cuprein","type":"related"},{"name":"upregulation of cytocuprein","type":"related"},{"name":"upregulation of erythrocuprein","type":"related"},{"name":"upregulation of ferrisuperoxide dismutase activity","type":"narrow"},{"name":"upregulation of hemocuprein","type":"related"},{"name":"upregulation of hepatocuprein","type":"related"},{"name":"upregulation of iron superoxide dismutase activity","type":"narrow"},{"name":"upregulation of iron superoxide oxidoreductase","type":"related"},{"name":"upregulation of manganese superoxide dismutase activity","type":"narrow"},{"name":"upregulation of manganese superoxide oxidoreductase","type":"related"},{"name":"upregulation of nickel superoxide dismutase activity","type":"narrow"},{"name":"upregulation of nickel superoxide oxidoreductase","type":"related"},{"name":"upregulation of superoxide dismutase I","type":"related"},{"name":"upregulation of superoxide dismutase II","type":"related"},{"name":"upregulation of superoxide dismutase activity","type":"exact"},{"name":"upregulation of superoxide:superoxide oxidoreductase activity","type":"exact"},{"name":"upregulation of zinc superoxide oxidoreductase","type":"related"}],"termid":"GO:1901671"}


id: MOD:00293
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts three L-cysteine residues, an L-serine residue and a four-iron four-sulfur cluster to tris-L-cysteinyl L-serinyl tetrairon tetrasulfide.","definition_xrefs":["RESID:AA0288"],"direct_ancestors":[{"relation_name":"is_a","term_name":"iron-sulfur cluster containing modification","termid":"MOD:00739"},{"relation_name":"is_a","term_name":"metal or metal cluster coordinated L-cysteine residue","termid":"MOD:02067"},{"relation_name":"is_a","term_name":"metal or metal cluster coordinated L-serine residue","termid":"MOD:02072"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tris-L-cysteinyl L-serinyl tetrairon tetrasulfide","synonyms":[{"name":"tetra-mu3-sulfidotris(S-cysteinyliron)(O3-serinyliron)","type":"exact"},{"name":"tris-L-cysteinyl L-serinyl tetrairon tetrasulfide","type":"exact"}],"termid":"MOD:00293"}


id: PBO:0024866
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Smc5-6 complex SMC P-loop ATPase subunit Smc6","termid":"PBO:0024866"}


id: PBO:0082719
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Component of the Paf1p complex; binds to and modulates the activity of RNA polymerases I and II; required for expression of certain genes, modification of some histones, and telomere maintenance; involved in transcription elongation as demonstrated by the G-less-based run-on (GLRO) assay; protein abundance increases in response to DNA replication stress; human homolog, parafibromin, is a tumour suppressor linked to breast, renal and gastric cancers","termid":"PBO:0082719"}


id: FYPO:0007907
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the phosphorylation of one or more specific proteins, or of specific protein sites, occurs to a greater extent than normal when a cell is subject to amino acid starvation.","definition_xrefs":["PMID:34805795nPomBase:val"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased protein phosphorylation during vegetative growth","termid":"FYPO:0001038"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0002494"},{"rel_name":"is_a","termid":"FYPO:0002274"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0001320","FYPO:0002274","FYPO:0001985","FYPO:0000002","FYPO:0002494"],"is_obsolete":false,"name":"increased protein phosphorylation during amino acid starvation","termid":"FYPO:0007907"}


id: GO:0097637
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"OBSOLETE. The component of the autophagosome membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.","definition_xrefs":["GOC:autophagy","GOC:mf"],"gene_count":0,"genotype_count":0,"name":"obsolete integral component of autophagosome membrane (obsolete GO:0097637)","synonyms":[{"name":"autophagic vacuole integral membrane protein","type":"related"},{"name":"integral component of autophagic vacuole membrane","type":"exact"},{"name":"integral to autophagic vacuole membrane","type":"narrow"}],"termid":"GO:0097637"}


id: PBO:0090492
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"plasma membrane anchored protein, claudin family, predicted membrane sensor Mac1","termid":"PBO:0090492"}


id: PBO:0044314
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cytochrome b561 family member D2","termid":"PBO:0044314"}


id: PBO:0064078
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"piwi-interacting RNA cluster 112","termid":"PBO:0064078"}


id: PBO:0074623
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nucleolar RNA, H/ACA box 21B","termid":"PBO:0074623"}


id: GO:1904460
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of substance P secretion.","definition_xrefs":["GOC:TermGenie","GO_REF:0000058","PMID:11278900"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of peptide hormone secretion","termid":"GO:0090277"},{"relation_name":"is_a","term_name":"regulation of substance P secretion","termid":"GO:1904458"},{"relation_name":"positively_regulates","term_name":"substance P secretion","termid":"GO:1990772"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"positively_regulates","termid":"GO:0023052"},{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"regulates","termid":"GO:0023052"},{"rel_name":"positively_regulates","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0006810","GO:0023052","GO:0008150"],"is_obsolete":false,"name":"positive regulation of substance P secretion","synonyms":[{"name":"activation of substance P secretion","type":"narrow"},{"name":"up regulation of substance P secretion","type":"exact"},{"name":"up-regulation of substance P secretion","type":"exact"},{"name":"upregulation of substance P secretion","type":"exact"}],"termid":"GO:1904460"}


id: GO:0042708
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the hydrolysis of elastin.","definition_xrefs":["ISBN:0198506732"],"gene_count":0,"genotype_count":0,"name":"obsolete elastase activity (obsolete GO:0042708)","synonyms":[{"name":"elastase activity","type":"exact"}],"termid":"GO:0042708"}


id: PR:Q8TFH4
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPAPB17E12.10c gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q8TFH4"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal RNA methyltransferase PB17E12.10c (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAPB17E12.10c","synonyms":[{"name":"Spom972h-SPAPB17E12.10c","type":"exact"},{"name":"rRNA (uridine-2'-O-)-methyltransferase (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:Q8TFH4"}


id: SO:0000612
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"The polypyrimidine tract is one of the cis-acting sequence elements directing intron removal in pre-mRNA splicing.","direct_ancestors":[{"relation_name":"is_a","term_name":"spliceosomal_intron_region","termid":"SO:0000841"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"polypyrimidine_tract","secondary_identifiers":["http://en.wikipedia.org/wiki/Polypyrimidine_tract"],"synonyms":[{"name":"polypyrimidine tract","type":"exact"}],"termid":"SO:0000612"}


id: GO:0046078
data:
  {"annotated_genes":["SJAG_04487","SJAG_03771"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[95149,104544],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006226"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways involving dUMP, deoxyuridine (5'-)monophosphate (2'-deoxyuridine 5'-phosphate).","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pyrimidine deoxyribonucleoside monophosphate metabolic process","termid":"GO:0009176"},{"relation_name":"is_a","term_name":"pyrimidine deoxyribonucleotide metabolic process","termid":"GO:0009219"}],"gene_count":2,"genes_by_uniquename":{"SJAG_03771":null,"SJAG_04487":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0055086"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0008150","GO:0055086","GO:0044281"],"is_obsolete":false,"name":"dUMP metabolic process","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"dUMP metabolism","type":"exact"}],"termid":"GO:0046078","terms_by_termid":{"GO:0006226":null}}


id: GO:2000603
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of secondary growth.","definition_xrefs":["GOC:obol"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of growth","termid":"GO:0040008"},{"relation_name":"regulates","term_name":"secondary growth","termid":"GO:0080117"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of secondary growth","termid":"GO:2000603"}


id: GO:0010538
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Modulates the activity of the Hsp27 molecular chaperone.","definition_xrefs":["GOC:dph","GOC:tb","PMID:11546764"],"gene_count":0,"genotype_count":0,"name":"obsolete Hsp27 protein regulator activity (obsolete GO:0010538)","synonyms":[{"name":"Hsp27 protein regulator activity","type":"exact"}],"termid":"GO:0010538"}


id: PBO:0075771
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SRSF2 pseudogene 1","termid":"PBO:0075771"}


id: GO:0045012
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. A major histocompatibility complex class II receptor. These display processed antigens from virally-infected or transformed cells. Class-II-positive cells ('antigen-presenting cells') can take up antigens from outside by endocytosis, degrade them into small peptides, and re-export the peptides (now bound to MHC class II protein) to the cell surface. These peptide-MHC class II complexes can then be recognized by specific CD4+ lymphocytes.","definition_xrefs":["ISBN:0879694971","ISBN:081533642X"],"gene_count":0,"genotype_count":0,"name":"obsolete MHC class II receptor activity (obsolete GO:0045012)","synonyms":[{"name":"MHC class II receptor activity","type":"exact"},{"name":"class II major histocompatibility complex antigen","type":"related"},{"name":"major histocompatibility complex class II receptor","type":"exact"}],"termid":"GO:0045012"}


id: PBO:0047441
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Fc gamma binding protein","termid":"PBO:0047441"}


id: PBO:0031109
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-resistance_to_microtubule-destabilizing_substance","termid":"PBO:0031109"}


id: PBO:0005074
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"wtf element Wtf6","termid":"PBO:0005074"}


id: GO:0004962
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Combining with endothelin and transmitting the signal across the membrane by activating an associated G-protein; promotes the exchange of GDP for GTP on the alpha subunit of a heterotrimeric G-protein complex.","definition_xrefs":["IUPHAR_RECEPTOR:2263","IUPHAR_RECEPTOR:2265","GOC:signaling","IUPHAR_GPCR:1283","GOC:dph","GOC:bf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"G protein-coupled peptide receptor activity","termid":"GO:0008528"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0038023"}],"interesting_parent_ids":["GO:0003674","GO:0038023"],"is_obsolete":false,"name":"endothelin receptor activity","secondary_identifiers":["GO:0001600","GO:0001599"],"synonyms":[{"name":"endothelin-A receptor activity","type":"narrow"},{"name":"endothelin-B receptor activity","type":"narrow"}],"termid":"GO:0004962"}


id: PBO:0076112
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"syntaxin 18","termid":"PBO:0076112"}


id: PBO:0083826
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Essential subunit of the Pan2p-Pan3p poly(A)-ribonuclease complex; poly (A) mRNA binding subunit which recruits mRNA to the complex; the Pan2p-Pan3p complex controls poly(A) tail length and regulates the stoichiometry and activity of postreplication repair complexes","termid":"PBO:0083826"}


id: PBO:0073148
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SEC24 homolog A pseudogene 1","termid":"PBO:0073148"}


id: GO:0005227
data:
  {"annotated_genes":["SJAG_03895","SJAG_02322"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[92162,105545],"is_not":false,"summary":null,"term":"GO:0005227"}]},"cv_name":"molecular_function","definition":"Enables the calcium concentration-regulatable energy-independent passage of cations across a lipid bilayer down a concentration gradient.","definition_xrefs":["GOC:mtg_transport","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"monoatomic ion-gated channel activity","termid":"GO:0022839"},{"relation_name":"is_a","term_name":"ligand-gated monoatomic cation channel activity","termid":"GO:0099094"}],"gene_count":2,"genes_by_uniquename":{"SJAG_02322":null,"SJAG_03895":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0022857","GO:0005215","GO:0003674"],"is_obsolete":false,"name":"calcium-activated cation channel activity","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["Reactome:R-HSA-9717383"],"synonyms":[{"name":"calcium activated cation channel activity","type":"exact"},{"name":"intracellular calcium-activated potassium channel","type":"narrow"},{"name":"polycystin","type":"narrow"}],"termid":"GO:0005227","terms_by_termid":{"GO:0005227":null}}


id: PATO:0000881
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0000881 gestational period value (obsolete PATO:0000881)","termid":"PATO:0000881"}


id: PBO:0038755
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"actin related protein 3B","termid":"PBO:0038755"}


id: GO:0010327
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: acetyl-CoA + (Z)-3-hexen-1-ol = CoA + (Z)-3-hexen-1-yl acetate.","definition_xrefs":["PMID:17163883"],"direct_ancestors":[{"relation_name":"is_a","term_name":"O-acetyltransferase activity","termid":"GO:0016413"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016746"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003824","GO:0016746","GO:0003674","GO:0016740"],"is_obsolete":false,"name":"acetyl CoA:(Z)-3-hexen-1-ol acetyltransferase activity","synonyms":[{"name":"hexenol acetyltransferase","type":"related"}],"termid":"GO:0010327"}


id: MOD:01457
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-serine residue to L-cysteine (not known as a natural, post-translational modification process).","definition_xrefs":["PubMed:18688235","PubMed:1849824"],"direct_ancestors":[{"relation_name":"is_a","term_name":"L-cysteine residue","termid":"MOD:00014"},{"relation_name":"is_a","term_name":"sulfur substitution for oxygen","termid":"MOD:00749"},{"relation_name":"is_a","term_name":"modified L-serine residue","termid":"MOD:00916"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"L-cysteine (Ser)","synonyms":[{"name":"Cys(Ser)","type":"exact"}],"termid":"MOD:01457"}


id: GO:0042955
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The directed movement of dextrin, any one, or the mixture, of the intermediate polysaccharides formed during the hydrolysis of starch, which are dextrorotatory, soluble in water, and precipitable in alcohol, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"polysaccharide transport","termid":"GO:0015774"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0006810","GO:0051179"],"is_obsolete":false,"name":"dextrin transport","termid":"GO:0042955"}


id: GO:0018839
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: cis-4-(2-(3-hydroxy)-thionaphthenyl)-2-oxo-3-butenoate = trans-4-(2-(3-hydroxy)-thionaphthenyl)-2-oxo-3-butenoate.","definition_xrefs":["UM-BBD_reactionID:r0163"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cis-trans isomerase activity","termid":"GO:0016859"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016853"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016853"],"is_obsolete":false,"name":"cis-4-[2-(3-hydroxy)-thionaphthenyl]-2-oxo-3-butenoate isomerase activity","secondary_identifiers":["EC:5.2.1.-"],"termid":"GO:0018839"}


id: GO:0005834
data:
  {"annotated_genes":["SJAG_02444","SJAG_04266","SJAG_02233","SJAG_03081","SJAG_04026"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[90397,102644,103290,105180,109995],"is_not":false,"summary":null,"term":"GO:0005834"}]},"cv_name":"cellular_component","definition":"Any of a family of heterotrimeric GTP-binding and hydrolyzing proteins; they belong to a superfamily of GTPases that includes monomeric proteins such as EF-Tu and RAS. Heterotrimeric G-proteins consist of three subunits; the alpha subunit contains the guanine nucleotide binding site and possesses GTPase activity; the beta and gamma subunits are tightly associated and function as a beta-gamma heterodimer; extrinsic plasma membrane proteins (cytoplasmic face) that function as a complex to transduce signals from G protein-coupled receptors to an effector protein.","definition_xrefs":["ISBN:0198547684"],"direct_ancestors":[{"relation_name":"is_a","term_name":"plasma membrane protein complex","termid":"GO:0098797"},{"relation_name":"is_a","term_name":"GTPase complex","termid":"GO:1905360"},{"relation_name":"part_of","term_name":"extrinsic component of cytoplasmic side of plasma membrane","termid":"GO:0031234"}],"gene_count":5,"genes_by_uniquename":{"SJAG_02233":null,"SJAG_02444":null,"SJAG_03081":null,"SJAG_04026":null,"SJAG_04266":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005886"}],"interesting_parent_ids":["GO:0005575","GO:0032991","GO:0005886"],"is_obsolete":false,"name":"heterotrimeric G-protein complex","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"heterotrimeric G-protein GTPase activity","type":"related"},{"name":"heterotrimeric G-protein GTPase, alpha-subunit","type":"narrow"},{"name":"heterotrimeric G-protein GTPase, beta-subunit","type":"narrow"},{"name":"heterotrimeric G-protein GTPase, gamma-subunit","type":"narrow"}],"termid":"GO:0005834","terms_by_termid":{"GO:0005834":null}}


id: PBO:0048591
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"gamma-glutamyltransferase light chain 5 pseudogene","termid":"PBO:0048591"}


id: PBO:0074212
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"solute carrier family 43 member 1","termid":"PBO:0074212"}


id: PBO:0063264
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protocadherin beta 10","termid":"PBO:0063264"}


id: PBO:0071854
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein S2 pseudogene 49","termid":"PBO:0071854"}


id: GO:0071389
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a mineralocorticoid stimulus. Mineralocorticoids are hormonal C21 corticosteroids synthesized from cholesterol and characterized by their similarity to aldosterone. Mineralocorticoids act primarily on water and electrolyte balance.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to mineralocorticoid","termid":"GO:0051385"},{"relation_name":"is_a","term_name":"cellular response to corticosteroid stimulus","termid":"GO:0071384"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cellular response to mineralocorticoid stimulus","termid":"GO:0071389"}


id: RO:0002260
data:
  {"annotation_feature_type":"gene","cv_name":"relationship","definition":"c has-biological-role r iff c has-role r and r is a biological role (CHEBI:24432)","direct_ancestors":[{"relation_name":"is_a","term_name":"has_role","termid":"RO:0000087"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"has_biological_role","termid":"RO:0002260"}


id: PBO:0042217
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CCNO divergent transcript","termid":"PBO:0042217"}


id: PBO:0052266
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"lysine demethylase 4A","termid":"PBO:0052266"}


id: PBO:0065619
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protein tyrosine phosphatase domain containing 1","termid":"PBO:0065619"}


id: PBO:0002990
data:
  {"annotation_feature_type":"gene","cv_name":"complementation","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"functionally complements S. cerevisiae CAN1","termid":"PBO:0002990"}


id: PBO:0088076
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Ubiquitin-specific protease that cleaves ubiquitin-protein fusions; UBP9 has a paralog, UBP13, that arose from the whole genome duplication","termid":"PBO:0088076"}


id: PATO:0001806
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A sensitivity quality inhering in a bearer by virtue of the bearer's exposure to radiation.","definition_xrefs":["PATOC:GVG"],"direct_ancestors":[{"relation_name":"is_a","term_name":"sensitivity toward","termid":"PATO:0000085"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sensitivity to irradiation","termid":"PATO:0001806"}


id: PBO:0090666
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial GIDA family tRNA uridine 5-carboxymethylaminomethyl modification enzyme Ips1","termid":"PBO:0090666"}


id: PATO:0000845
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0000845 auditory ability (obsolete PATO:0000845)","termid":"PATO:0000845"}


id: GO:0080006
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Determines the spacing between two shoot nodes. A shoot node is the region of the shoot where the spikelet, flower, floret, branch, bud and/or leaves are attached.","definition_xrefs":["GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pattern specification process","termid":"GO:0007389"},{"relation_name":"part_of","term_name":"shoot system development","termid":"GO:0048367"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"internode patterning","termid":"GO:0080006"}


id: PBO:0077380
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transmembrane protein 121","termid":"PBO:0077380"}


id: PBO:0084914
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Mitotic spindle midzone-localized microtubule bundling protein; microtubule-associated protein (MAP) family member; required for spindle elongation and stabilization; undergoes cell cycle-regulated degradation by anaphase promoting complex; potential Cdc28p substrate; relative distribution to microtubules decreases upon DNA replication stress","termid":"PBO:0084914"}


id: GO:0043887
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: melibiose(out) + Na+(out) = melibiose(in) + Na+(in).","definition_xrefs":["PMID:1970646"],"direct_ancestors":[{"relation_name":"is_a","term_name":"solute:sodium symporter activity","termid":"GO:0015370"},{"relation_name":"is_a","term_name":"melibiose:monoatomic cation symporter activity","termid":"GO:0015487"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005215"}],"interesting_parent_ids":["GO:0022857","GO:0005215","GO:0003674"],"is_obsolete":false,"name":"melibiose:sodium symporter activity","synonyms":[{"name":"MelB","type":"related"},{"name":"Na+ (Li+)/melibiose symporter activity","type":"exact"},{"name":"Na+-melibiose symporter activity","type":"exact"},{"name":"Na+/melibiose symporter activity","type":"exact"},{"name":"Na+:melibiose symporter activity","type":"exact"},{"name":"melibiose carrier protein","type":"related"},{"name":"melibiose permease","type":"broad"},{"name":"melibiose-Na+ symporter activity","type":"exact"},{"name":"melibiose-sodium symporter activity","type":"exact"},{"name":"melibiose/Na+ symporter activity","type":"exact"},{"name":"melibiose/sodium symporter activity","type":"exact"},{"name":"melibiose:Na+ symporter activity","type":"exact"},{"name":"sodium-melibiose symporter activity","type":"exact"},{"name":"sodium/melibiose symporter activity","type":"exact"},{"name":"sodium:melibiose symporter activity","type":"exact"},{"name":"thiomethylgalactoside permease II","type":"related"}],"termid":"GO:0043887"}


