# terms

id: GO:0016438
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: GDP-alpha-D-mannose + queuosine34 in tRNA(Asp) = GDP + H+ + O-4''-alpha-D-mannosylqueuosine34 in tRNA(Asp).","definition_xrefs":["RHEA:12885"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mannosyltransferase activity","termid":"GO:0000030"},{"relation_name":"is_a","term_name":"catalytic activity, acting on a tRNA","termid":"GO:0140101"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016757"},{"rel_name":"is_a","termid":"GO:0140101"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0140098"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016757","GO:0003674","GO:0140098","GO:0140101","GO:0003824","GO:0016740"],"is_obsolete":false,"name":"tRNA-queuosine(34) beta-mannosyltransferase activity","secondary_identifiers":["MetaCyc:2.4.1.110-RXN","EC:2.4.1.110"],"synonyms":[{"name":"GDP-mannose:tRNAAsp-queuosine O-5''-beta-D-mannosyltransferase activity","type":"related"},{"name":"tRNA-queuosine beta-mannosyltransferase activity","type":"broad"}],"termid":"GO:0016438"}


id: PBO:0085842
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm and to the nucleus; protein abundance increases in response to DNA replication stress","termid":"PBO:0085842"}


id: PBO:0088422
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"COPII-coated vesicle component Erv25","termid":"PBO:0088422"}


id: PBO:0065301
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"serine protease 8","termid":"PBO:0065301"}


id: GO:0021809
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Signaling between members of the neurotrophin family and their receptors that result in the start of cell motility as a component of the process of cerebral cortex glial-mediated radial migration.","definition_xrefs":["GOC:cls","GO_REF:0000021","GOC:dgh","GOC:dph","PMID:12626695","GOC:jid"],"gene_count":0,"genotype_count":0,"name":"obsolete neurotrophic factor signaling initiating cell movement, involved in cerebral cortex radial glia guided migration (obsolete GO:0021809)","synonyms":[{"name":"neurotrophic factor signalling initiating cell movement, involved in cerebral cortex glial-mediated radial migration","type":"exact"}],"termid":"GO:0021809"}


id: PBO:0054069
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1416","termid":"PBO:0054069"}


id: PBO:0049867
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"helt bHLH transcription factor","termid":"PBO:0049867"}


id: GO:0072399
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process that occurs in response to signals generated as a result of cytokinesis checkpoint signaling.","definition_xrefs":["GOC:mtg_cell_cycle"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to cell cycle checkpoint signaling","termid":"GO:0072396"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"response to cytokinesis checkpoint signaling","secondary_identifiers":["GO:0072420"],"synonyms":[{"name":"cytokinesis checkpoint effector process","type":"exact"},{"name":"response to signal involved in cytokinesis checkpoint","type":"exact"}],"termid":"GO:0072399"}


id: PBO:0061446
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nuclear receptor subfamily 3 group C member 1","termid":"PBO:0061446"}


id: PBO:0057819
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 3139","termid":"PBO:0057819"}


id: GO:0045056
data:
  {"annotated_genes":["SJAG_01633"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[69502],"is_not":false,"summary":null,"term":"GO:0045056"}]},"cv_name":"biological_process","definition":"The directed movement of endocytosed material through the cell and its exocytosis from the plasma membrane at the opposite side.","definition_xrefs":["ISBN:0716731363"],"direct_ancestors":[{"relation_name":"is_a","term_name":"vesicle-mediated transport","termid":"GO:0016192"},{"relation_name":"is_a","term_name":"multicellular organismal process","termid":"GO:0032501"}],"gene_count":1,"genes_by_uniquename":{"SJAG_01633":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0016192"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006810","GO:0008150","GO:0051179","GO:0016192"],"is_obsolete":false,"name":"transcytosis","references_by_uniquename":{"GO_REF:0000033":null},"secondary_identifiers":["Wikipedia:Transcytosis"],"termid":"GO:0045056","terms_by_termid":{"GO:0045056":null}}


id: PBO:0001950
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal-ubiquitin fusion protein Ubi3 (predicted)","termid":"PBO:0001950"}


id: GO:0050295
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: cholesteryl-beta-D-glucoside + H2O = D-glucose + cholesterol.","definition_xrefs":["EC:3.2.1.104","RHEA:11956"],"direct_ancestors":[{"relation_name":"is_a","term_name":"beta-glucosidase activity","termid":"GO:0008422"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0016798"}],"interesting_parent_ids":["GO:0016798","GO:0003674","GO:0003824","GO:0016787"],"is_obsolete":false,"name":"steryl-beta-glucosidase activity","secondary_identifiers":["KEGG_REACTION:R01460","MetaCyc:STERYL-BETA-GLUCOSIDASE-RXN"],"synonyms":[{"name":"cholesteryl-beta-D-glucoside glucohydrolase activity","type":"related"},{"name":"steryl-b-glucosidase activity","type":"exact"}],"termid":"GO:0050295"}


id: PBO:0059285
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial ribosomal protein L42","termid":"PBO:0059285"}


id: FYPO:0003829
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which mitotic spindle elongation does not occur.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"has_output","term_name":"short bipolar mitotic spindle","termid":"FYPO:0000732"},{"relation_name":"is_a","term_name":"abnormal mitotic spindle elongation","termid":"FYPO:0000131"},{"relation_name":"is_a","term_name":"abolished cellular process","termid":"FYPO:0005449"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000337"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000641"},{"rel_name":"part_of","termid":"FYPO:0001985"},{"rel_name":"part_of","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"part_of","termid":"FYPO:0005447"},{"rel_name":"part_of","termid":"FYPO:0000337"},{"rel_name":"part_of","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000054"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000631"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000337","FYPO:0005447","FYPO:0000631","FYPO:0001320","FYPO:0000054","FYPO:0000641","FYPO:0000002"],"is_obsolete":false,"name":"abolished mitotic spindle elongation","synonyms":[{"name":"abolished spindle elongation during mitotic cell cycle","type":"related"},{"name":"mitotic spindle elongation abolished","type":"exact"},{"name":"mitotic spindle elongation abolished during vegetative growth","type":"exact"}],"termid":"FYPO:0003829"}


id: PBO:0070009
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 1306, pseudogene","termid":"PBO:0070009"}


id: GO:0032773
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the activity of a tyrosinase enzyme monophenol oxygenase.","definition_xrefs":["GOC:tb","GOC:mah","GOC:dph","PMID:2494997"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of monooxygenase activity","termid":"GO:0032770"},{"relation_name":"is_a","term_name":"regulation of tyrosinase activity","termid":"GO:0032771"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of tyrosinase activity","synonyms":[{"name":"activation of monophenol oxygenase activity","type":"narrow"},{"name":"positive regulation of monophenol monooxygenase activity","type":"related"},{"name":"positive regulation of monophenol oxygenase activity","type":"exact"},{"name":"stimulation of monophenol oxygenase activity","type":"narrow"},{"name":"up regulation of monophenol oxygenase activity","type":"exact"},{"name":"up-regulation of monophenol oxygenase activity","type":"exact"},{"name":"upregulation of monophenol oxygenase activity","type":"exact"}],"termid":"GO:0032773"}


id: PBO:0040084
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"arylsulfatase D pseudogene 1","termid":"PBO:0040084"}


id: PBO:0049455
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glycogenin 1","termid":"PBO:0049455"}


id: PBO:0073986
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"solute carrier family 25 member 1","termid":"PBO:0073986"}


id: PBO:0029710
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_cell_population_growth_at_high_pH","termid":"PBO:0029710"}


id: PBO:0091992
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"potassium channel, beta subunit, aldo-keto reductase","termid":"PBO:0091992"}


id: PBO:0050813
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"hepatitis B virus integration site 7","termid":"PBO:0050813"}


id: SO:0000913
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A clone insert made from cDNA.","definition_xrefs":["SO:xp"],"direct_ancestors":[{"relation_name":"has_quality","term_name":"cDNA","termid":"SO:0000756"},{"relation_name":"is_a","term_name":"clone_insert","termid":"SO:0000753"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cloned_cDNA_insert","synonyms":[{"name":"cloned cDNA insert","type":"exact"}],"termid":"SO:0000913"}


id: PBO:0031646
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_cellular_respiration","termid":"PBO:0031646"}


id: PBO:0090452
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SHREC complex ATP-dependent chromatin remodeller Mit1","termid":"PBO:0090452"}


id: MOD:00002
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-serine residue to O3-glycosylserine.","definition_xrefs":["PubMed:18688235"],"direct_ancestors":[{"relation_name":"is_a","term_name":"O-glycosylated residue","termid":"MOD:00396"},{"relation_name":"is_a","term_name":"modified L-serine residue","termid":"MOD:00916"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:00693"}],"interesting_parent_ids":["MOD:00693"],"is_obsolete":false,"name":"O-glycosyl-L-serine","synonyms":[{"name":"OGlycoSer","type":"exact"}],"termid":"MOD:00002"}


id: PBO:0083562
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Dubious open reading frame; unlikely to encode a functional protein, based on available experimental and comparative sequence data; partially overlaps verified gene VID21/YDR359C","termid":"PBO:0083562"}


id: PBO:0061609
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nuclear distribution C, dynein complex regulator","termid":"PBO:0061609"}


id: PBO:0073750
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"solute carrier family 2 member 5","termid":"PBO:0073750"}


id: PBO:0001577
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Npr2/3 complex subunit Npr2 (predicted)","termid":"PBO:0001577"}


id: PBO:0071925
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein S4X pseudogene 2","termid":"PBO:0071925"}


id: GO:1990569
data:
  {"annotated_genes":["SJAG_00434"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[101146],"is_not":false,"summary":null,"term":"GO:1990569"}]},"cv_name":"biological_process","definition":"The process in which UDP-N-acetylglucosamine is transported across a membrane.","definition_xrefs":["PMID:10788474"],"direct_ancestors":[{"relation_name":"is_a","term_name":"organic anion transport","termid":"GO:0015711"},{"relation_name":"is_a","term_name":"pyrimidine nucleotide-sugar transmembrane transport","termid":"GO:0090481"}],"gene_count":1,"genes_by_uniquename":{"SJAG_00434":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0055085"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0051179"}],"interesting_parent_ids":["GO:0008150","GO:0006810","GO:0051179","GO:0055085"],"is_obsolete":false,"name":"UDP-N-acetylglucosamine transmembrane transport","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["GO:0015788"],"synonyms":[{"name":"UDP-N-acetylglucosamine transport","type":"related"}],"termid":"GO:1990569","terms_by_termid":{"GO:1990569":null}}


id: PBO:0012830
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"exosome subunit Rrp4","termid":"PBO:0012830"}


id: PBO:0049482
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"H1.6 linker histone, cluster member","termid":"PBO:0049482"}


id: GO:0051096
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the activity of a helicase.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of ATP-dependent activity","termid":"GO:0032781"},{"relation_name":"is_a","term_name":"positive regulation of catalytic activity","termid":"GO:0043085"},{"relation_name":"is_a","term_name":"regulation of helicase activity","termid":"GO:0051095"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of helicase activity","synonyms":[{"name":"activation of helicase activity","type":"narrow"},{"name":"stimulation of helicase activity","type":"narrow"},{"name":"up regulation of helicase activity","type":"exact"},{"name":"up-regulation of helicase activity","type":"exact"},{"name":"upregulation of helicase activity","type":"exact"}],"termid":"GO:0051096"}


id: PBO:0039023
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ArfGAP with GTPase domain, ankyrin repeat and PH domain 1","termid":"PBO:0039023"}


id: GO:0051862
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The directed movement of molecule(s) produced by an organism to a location inside the symbiont organism. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction.","definition_xrefs":["GOC:cc"],"direct_ancestors":[{"relation_name":"is_a","term_name":"biological process involved in interaction with symbiont","termid":"GO:0051702"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"translocation of molecules into symbiont","synonyms":[{"name":"transport of molecules into symbiont","type":"exact"}],"termid":"GO:0051862"}


id: PBO:0029739
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_cAMP_level_during_nitrogen_starvation","termid":"PBO:0029739"}


id: SO:0001098
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A binding site that, in the polypeptide molecule, interacts selectively and non-covalently with magnesium ions.","definition_xrefs":["EBIBS:GAR","SO:cb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"polypeptide_metal_contact","termid":"SO:0001092"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"SO:0000839"}],"interesting_parent_ids":["SO:0000839"],"is_obsolete":false,"name":"polypeptide_magnesium_ion_contact_site","secondary_identifiers":["BS:00187"],"synonyms":[{"name":"Mg_contact_site","type":"exact"},{"name":"polypeptide magnesium ion contact site","type":"exact"}],"termid":"SO:0001098"}


id: GO:0009575
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The space enclosed by the double membrane of a chromoplast but excluding the photosynthetic material.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"plastid stroma","termid":"GO:0009532"},{"relation_name":"part_of","term_name":"chromoplast","termid":"GO:0009509"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005737","GO:0005575"],"is_obsolete":false,"name":"chromoplast stroma","termid":"GO:0009575"}


id: GO:0090050
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that increases the frequency, rate or extent of cell migration involved in sprouting angiogenesis. Cell migration involved in sprouting angiogenesis is the orderly movement of endothelial cells into the extracellular matrix in order to form new blood vessels contributing to the process of sprouting angiogenesis.","definition_xrefs":["GOC:dph","GOC:BHF","GOC:rl","GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of blood vessel endothelial cell migration","termid":"GO:0043536"},{"relation_name":"is_a","term_name":"regulation of cell migration involved in sprouting angiogenesis","termid":"GO:0090049"},{"relation_name":"positively_regulates","term_name":"cell migration involved in sprouting angiogenesis","termid":"GO:0002042"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of cell migration involved in sprouting angiogenesis","termid":"GO:0090050"}


id: PBO:0046773
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"exostosin glycosyltransferase 1","termid":"PBO:0046773"}


id: GO:0140640
data:
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id: GO:0051354
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id: GO:2000975
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id: PBO:0078560
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id: PBO:0027436
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id: GO:0007550
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id: GO:0003024
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id: PBO:0083609
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id: FYPO:0000122
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which telomere maintenance, i.e. any process that contributes to the maintenance of proper telomeric length and structure, is abnormal.","definition_xrefs":["GO:0000723","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation phenotype during vegetative growth","termid":"FYPO:0001334"},{"relation_name":"is_a","term_name":"DNA metabolism phenotype during vegetative growth","termid":"FYPO:0001346"},{"relation_name":"is_a","term_name":"abnormal cellular component organization during vegetative growth","termid":"FYPO:0001353"},{"relation_name":"is_a","term_name":"abnormal metabolic process during vegetative growth","termid":"FYPO:0001363"},{"relation_name":"is_a","term_name":"abnormal telomere maintenance","termid":"FYPO:0007415"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000641"},{"rel_name":"is_a","termid":"FYPO:0000293"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0005447","FYPO:0001985","FYPO:0000293","FYPO:0000641","FYPO:0000002"],"is_obsolete":false,"name":"abnormal telomere maintenance during vegetative growth","synonyms":[{"name":"abnormal telomere maintenance during mitotic cell cycle","type":"related"},{"name":"telomere maintenance defects during vegetative growth","type":"exact"}],"termid":"FYPO:0000122"}


id: PBO:0044282
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"C-X-C motif chemokine receptor 5","termid":"PBO:0044282"}


id: GO:2001178
data:
  {"annotated_genes":["SJAG_00973","SJAG_03421"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[84447,101858],"is_not":false,"summary":null,"term":"GO:2001178"}]},"cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of mediator complex assembly.","definition_xrefs":["GOC:obol"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of protein-containing complex assembly","termid":"GO:0031334"},{"relation_name":"is_a","term_name":"regulation of mediator complex assembly","termid":"GO:2001176"},{"relation_name":"positively_regulates","term_name":"mediator complex assembly","termid":"GO:0036034"}],"gene_count":2,"genes_by_uniquename":{"SJAG_00973":null,"SJAG_03421":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"positively_regulates","termid":"GO:0065003"},{"rel_name":"regulates","termid":"GO:0065003"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"positively_regulates","termid":"GO:0044085"},{"rel_name":"regulates","termid":"GO:0044085"}],"interesting_parent_ids":["GO:0044085","GO:0065003","GO:0008150"],"is_obsolete":false,"name":"positive regulation of mediator complex assembly","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:2001178","terms_by_termid":{"GO:2001178":null}}


id: GO:0000459
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Exonucleolytic digestion of a pre-rRNA molecule in the process to generate a mature rRNA molecule.","definition_xrefs":["GOC:curators"],"gene_count":0,"genotype_count":0,"name":"obsolete exonucleolytic trimming involved in rRNA processing (obsolete GO:0000459)","synonyms":[{"name":"exonucleolytic trimming during rRNA processing","type":"related"}],"termid":"GO:0000459"}


id: GO:0030215
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a semaphorin receptor.","definition_xrefs":["GOC:ceb","PMID:12001990"],"direct_ancestors":[{"relation_name":"is_a","term_name":"signaling receptor binding","termid":"GO:0005102"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0005515"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0005515","GO:0003674","GO:0005488"],"is_obsolete":false,"name":"semaphorin receptor binding","synonyms":[{"name":"plexin binding","type":"narrow"},{"name":"plexin ligand","type":"narrow"},{"name":"semaphorin receptor ligand","type":"narrow"}],"termid":"GO:0030215"}


id: PBO:0051677
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"inhibin subunit alpha","termid":"PBO:0051677"}


id: GO:0003876
data:
  {"annotated_genes":["SJAG_04123"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[97982],"is_not":false,"summary":null,"term":"GO:0003876"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: AMP + H2O = IMP + NH3.","definition_xrefs":["EC:3.5.4.6"],"direct_ancestors":[{"relation_name":"is_a","term_name":"adenosine-phosphate deaminase activity","termid":"GO:0047623"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04123":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016810"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016787"}],"interesting_parent_ids":["GO:0003674","GO:0016787","GO:0016810","GO:0003824"],"is_obsolete":false,"name":"AMP deaminase activity","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["MetaCyc:AMP-DEAMINASE-RXN","Reactome:R-HSA-76590","RHEA:14777"],"synonyms":[{"name":"5-AMP deaminase activity","type":"related"},{"name":"5-adenylate deaminase activity","type":"related"},{"name":"5-adenylic acid deaminase activity","type":"related"},{"name":"AMP aminase activity","type":"related"},{"name":"AMP aminohydrolase activity","type":"related"},{"name":"adenosine 5-monophosphate deaminase activity","type":"related"},{"name":"adenosine 5-phosphate aminohydrolase activity","type":"related"},{"name":"adenosine monophosphate deaminase activity","type":"related"},{"name":"adenyl deaminase activity","type":"related"},{"name":"adenylate aminohydrolase activity","type":"related"},{"name":"adenylate deaminase activity","type":"related"},{"name":"adenylate deaminase reaction","type":"exact"},{"name":"adenylate desaminase activity","type":"related"},{"name":"adenylic acid deaminase activity","type":"related"},{"name":"adenylic deaminase activity","type":"related"},{"name":"myoadenylate deaminase activity","type":"narrow"}],"termid":"GO:0003876","terms_by_termid":{"GO:0003876":null}}


id: FYECO:0000053
data:
  {"annotation_feature_type":"gene","cv_name":"fission_yeast_phenotype_condition","definition":"An experimental condition in which melissic acid was added to the medium or assay buffer in excess compared to standard medium or assay buffers.","definition_xrefs":["PomBase:al"],"direct_ancestors":[{"relation_name":"is_a","term_name":"+ fatty acid","termid":"FYECO:0000042"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"+ melissic acid","termid":"FYECO:0000053"}


id: PBO:0044900
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"derlin 2","termid":"PBO:0044900"}


id: GO:1990184
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A heteromeric protein complex consisting of a multi-transmembrane spanning subunit (the light chain) and a type II glycoprotein subunit (the heavy chain) that functions to transport amino acids across a plasma membrane.","definition_xrefs":["PMID:14668347","GOC:kmv"],"direct_ancestors":[{"relation_name":"is_a","term_name":"plasma membrane protein complex","termid":"GO:0098797"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005886"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0005886","GO:0032991","GO:0005575"],"is_obsolete":false,"name":"amino acid transport complex","termid":"GO:1990184"}


id: PBO:0086057
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein of unknown function that associates with ribosomes; green fluorescent protein (GFP)-fusion protein localizes to the cell periphery and bud; not an essential gene; protein abundance increases in response to DNA replication stress; YMR295C has a paralog, YGR273C, that arose from the whole genome duplication","termid":"PBO:0086057"}


id: PBO:0027348
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_RNA_level_in_stationary_phase","termid":"PBO:0027348"}


id: GO:0070480
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The chemical reactions and pathways resulting in the breakdown of the transcript body of a nuclear-transcribed mRNA that occurs independent of deadenylation, but requires decapping followed by transcript decay.","definition_xrefs":["GOC:jp"],"gene_count":0,"genotype_count":0,"name":"obsolete exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-independent decay (obsolete GO:0070480)","termid":"GO:0070480"}


id: PBO:0069252
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 507, pseudogene","termid":"PBO:0069252"}


id: PBO:0043240
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Charcot-Leyden crystal protein pseudogene 2","termid":"PBO:0043240"}


id: PBO:0016117
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"heat shock protein Ssa2","termid":"PBO:0016117"}


id: GO:0008899
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: L-homoserine + succinyl-CoA = O-succinyl-L-homoserine + CoA.","definition_xrefs":["EC:2.3.1.46","RHEA:22008"],"direct_ancestors":[{"relation_name":"is_a","term_name":"O-succinyltransferase activity","termid":"GO:0016750"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016746"}],"interesting_parent_ids":["GO:0003824","GO:0016746","GO:0016740","GO:0003674"],"is_obsolete":false,"name":"homoserine O-succinyltransferase activity","secondary_identifiers":["KEGG_REACTION:R01777","MetaCyc:HOMSUCTRAN-RXN"],"synonyms":[{"name":"homoserine O-transsuccinylase activity","type":"broad"},{"name":"homoserine succinyltransferase activity","type":"related"},{"name":"succinyl-CoA:L-homoserine O-succinyltransferase activity","type":"related"}],"termid":"GO:0008899"}


id: PBO:0060228
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"myeloid associated differentiation marker","termid":"PBO:0060228"}


id: PBO:0027158
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_vacuolar_alanine_level","termid":"PBO:0027158"}


id: PBO:0053272
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"leukocyte immunoglobulin like receptor A5","termid":"PBO:0053272"}


id: PATO:0002304
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A quality of a process that has a value that is increased compared to normal or average.","definition_xrefs":["PATOC:GVG"],"direct_ancestors":[{"relation_name":"increased_in_magnitude_relative_to","term_name":"normal","termid":"PATO:0000461"},{"relation_name":"is_a","term_name":"process quality","termid":"PATO:0001236"},{"relation_name":"is_a","term_name":"increased quality","termid":"PATO:0002300"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"increased process quality","termid":"PATO:0002304"}


id: PR:O42935
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- rpl3201 gene.","definition_xrefs":["UniProtKB:O42935","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"60S ribosomal protein L32-B (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC16C6.11","synonyms":[{"name":"Spom972h-rpl3201","type":"exact"}],"termid":"PR:O42935"}


id: PBO:0026747
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_protein_degradation_during_mitotic_S_phase","termid":"PBO:0026747"}


id: GO:1903863
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The aggregation, arrangement and bonding together of a set of components to form a P granule.","definition_xrefs":["GO_REF:0000079","GOC:kmv","PMID:25535836","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"P granule organization","termid":"GO:0030719"},{"relation_name":"is_a","term_name":"non-membrane-bounded organelle assembly","termid":"GO:0140694"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0044085"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0044085","GO:0008150"],"is_obsolete":false,"name":"P granule assembly","synonyms":[{"name":"P granule formation","type":"exact"},{"name":"germline granule assembly","type":"exact"},{"name":"germline granule formation","type":"exact"},{"name":"polar granule assembly","type":"exact"},{"name":"polar granule formation","type":"exact"}],"termid":"GO:1903863"}


id: SO:0001765
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"When a variant from the genomic sequence is rarely found in the general population. The threshold for 'rare' varies between studies.","direct_ancestors":[{"relation_name":"is_a","term_name":"variant_frequency","termid":"SO:0001763"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"rare_variant","synonyms":[{"name":"rare variant","type":"exact"}],"termid":"SO:0001765"}


id: PR:Q9P3W2
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- atg1803 gene.","definition_xrefs":["UniProtKB:Q9P3W2","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SVP1-like protein 2 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC458.06","synonyms":[{"name":"Spom972h-atg1803","type":"exact"}],"termid":"PR:Q9P3W2"}


id: SO:0000770
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"The acceptor region of a two-piece tmRNA that when mature is charged at its 3' end with alanine. The tmRNA gene undergoes circular permutation in some groups of bacteria; processing of the transcripts from such a gene leaves the mature tmRNA in two pieces, base-paired together.","definition_xrefs":["doi:10.1093/nar/gkh795","Indiana:kw"],"direct_ancestors":[{"relation_name":"is_a","term_name":"tmRNA_region","termid":"SO:0000847"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tmRNA_acceptor_piece","synonyms":[{"name":"tmRNA acceptor piece","type":"exact"}],"termid":"SO:0000770"}


id: FYECO:0000096
data:
  {"annotation_feature_type":"gene","cv_name":"fission_yeast_phenotype_condition","definition":"Recovery from nitrogen starvation: cells are first grown in minimal medium containing no nitrogen for 24-48h. This medium is then replaced with nitrogen containing rich medium and cells are allowed to grow for 5-12h.","definition_xrefs":["PomBase:al"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nitrogen starvation and recovery","termid":"FYECO:0000110"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"24-48h nitrogen starvation followed by 5-12h recovery in rich medium","termid":"FYECO:0000096"}


id: GO:0010808
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that increases the frequency, rate or extent of synaptic vesicle priming. Synaptic vesicle priming is the formation of SNARE-containing complexes, bringing synaptic vesicle membrane and plasma membranes into close proximity and thereby facilitating membrane fusion.","definition_xrefs":["PMID:15489511","GOC:kmv","GOC:dph","GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of synaptic vesicle priming","termid":"GO:0010807"},{"relation_name":"is_a","term_name":"positive regulation of protein-containing complex assembly","termid":"GO:0031334"},{"relation_name":"positively_regulates","term_name":"synaptic vesicle priming","termid":"GO:0016082"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0044085"},{"rel_name":"regulates","termid":"GO:0065003"},{"rel_name":"positively_regulates","termid":"GO:0044085"},{"rel_name":"positively_regulates","termid":"GO:0065003"}],"interesting_parent_ids":["GO:0065003","GO:0008150","GO:0044085"],"is_obsolete":false,"name":"positive regulation of synaptic vesicle priming","termid":"GO:0010808"}


id: GO:0019756
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of cyanogenic glycosides, any glycoside containing a cyano group that is released as hydrocyanic acid on acid hydrolysis; such compounds occur in the kernels of various fruits.","definition_xrefs":["ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"glycoside biosynthetic process","termid":"GO:0016138"},{"relation_name":"is_a","term_name":"cyanogenic glycoside metabolic process","termid":"GO:0042341"},{"relation_name":"is_a","term_name":"secondary metabolite biosynthetic process","termid":"GO:0044550"},{"relation_name":"is_a","term_name":"nitrile biosynthetic process","termid":"GO:0080028"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0019748"}],"interesting_parent_ids":["GO:0019748","GO:0008150"],"is_obsolete":false,"name":"cyanogenic glycoside biosynthetic process","synonyms":[{"name":"cyanogenic glycoside anabolism","type":"exact"},{"name":"cyanogenic glycoside biosynthesis","type":"exact"},{"name":"cyanogenic glycoside formation","type":"exact"},{"name":"cyanogenic glycoside synthesis","type":"exact"}],"termid":"GO:0019756"}


id: PBO:0091641
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DNA-binding transcription factor Grt1","termid":"PBO:0091641"}


id: FYPO:0002810
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell population phenotype in which the septation index is normal (i.e. indistinguishable from wild type) in a population in stationary phase. The septation index is the proportion of the population undergoing septation at any given time.","definition_xrefs":["PomBase:vw","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal septation index","termid":"FYPO:0001903"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000003"},{"rel_name":"is_a","termid":"FYPO:0000257"}],"interesting_parent_ids":["FYPO:0000003","FYPO:0000257"],"is_obsolete":false,"name":"normal septation index in stationary phase","synonyms":[{"name":"normal septation in stationary phase","type":"related"},{"name":"normal septation index during stationary phase","type":"exact"}],"termid":"FYPO:0002810"}


id: PBO:0059316
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial ribosomal protein L55","termid":"PBO:0059316"}


id: FYPO:0001323
data:
  {"alleles_by_uniquename":{"SJAG_00426:allele-1":{"allele_type":"amino_acid_mutation","description":"P363S","gene_uniquename":"SJAG_00426","name":"bbl1-P363S","uniquename":"SJAG_00426:allele-1"},"SJAG_01956:allele-1":{"allele_type":"amino_acid_mutation","description":"E405K ts","gene_uniquename":"SJAG_01956","name":"nuc2-1051","uniquename":"SJAG_01956:allele-1"},"SJAG_02621:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_02621","name":"ago1delta","uniquename":"SJAG_02621:allele-1"},"SJAG_03118:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_03118","name":"leo1delta","uniquename":"SJAG_03118:allele-1"},"SJAG_03351:allele-1":{"allele_type":"amino_acid_mutation","description":"A186T ts","gene_uniquename":"SJAG_03351","name":"cut23-415","uniquename":"SJAG_03351:allele-1"},"SJAG_03575:allele-1":{"allele_type":"amino_acid_mutation","description":"E548K ts","gene_uniquename":"SJAG_03575","name":"apc2-361","uniquename":"SJAG_03575:allele-1"},"SJAG_03689:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_03689","name":"dcr1delta","uniquename":"SJAG_03689:allele-1"},"SJAG_04697:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_04697","name":"gms1delta","uniquename":"SJAG_04697:allele-1"}},"annotation_feature_type":"genotype","cv_annotations":{"multi_locus_phenotype":[{"annotations":[115492,115494],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0004982"},{"annotations":[115493,115495],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0004573"}],"single_locus_phenotype":[{"annotations":[115478],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0004205"},{"annotations":[115547],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0003727"},{"annotations":[115726],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0004695"},{"annotations":[115725],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0002227"},{"annotations":[115480],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0004982"},{"annotations":[115227,115226,115225],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0001327"},{"annotations":[115479],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0004574"}]},"cv_name":"fission_yeast_phenotype","definition":"A cell phenotype in which the amount of a specific substance measured in a cell differs from normal when the cell is in the vegetative growth phase of the life cycle.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"altered level of substance in cell","termid":"FYPO:0000989"},{"relation_name":"is_a","term_name":"abnormal cellular physical quality phenotype during vegetative growth","termid":"FYPO:0004639"}],"gene_count":8,"genes_by_uniquename":{"SJAG_00426":null,"SJAG_01956":null,"SJAG_02621":null,"SJAG_03118":null,"SJAG_03198":null,"SJAG_03351":null,"SJAG_03575":null,"SJAG_03689":null,"SJAG_04697":null},"genotype_count":8,"genotypes_by_uniquename":{"ago1delta__leo1delta":{"display_name":"ago1delta leo1delta","display_uniquename":"ago1delta__leo1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_02621:allele-1","expression":"Null"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_03118:allele-1","expression":"Null"}]}]},"apc2-361-E548K_ts-amino_acid_mutation-expression-not_assayed_or_wild_type":{"display_name":"apc2-361(E548K ts)","display_uniquename":"apc2-361-E548K_ts-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03575:allele-1","expression":"Not assayed or wild type"}]}]},"bbl1-P363S-P363S-amino_acid_mutation-expression-not_assayed_or_wild_type":{"display_name":"bbl1-P363S(aa)","display_uniquename":"bbl1-P363S-P363S-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_00426:allele-1","expression":"Not assayed or wild type"}]}]},"cut23-415-A186T_ts-amino_acid_mutation-expression-not_assayed_or_wild_type":{"display_name":"cut23-415(A186T ts)","display_uniquename":"cut23-415-A186T_ts-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03351:allele-1","expression":"Not assayed or wild type"}]}]},"dcr1delta":{"display_name":"dcr1delta","display_uniquename":"dcr1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03689:allele-1","expression":"Null"}]}]},"dcr1delta__leo1delta":{"display_name":"dcr1delta leo1delta","display_uniquename":"dcr1delta__leo1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03689:allele-1","expression":"Null"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_03118:allele-1","expression":"Null"}]}]},"gms1delta":{"display_name":"gms1delta","display_uniquename":"gms1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04697:allele-1","expression":"Null"}]}]},"nuc2-1051-E405K_ts-amino_acid_mutation-expression-not_assayed_or_wild_type":{"display_name":"nuc2-1051(E405K ts)","display_uniquename":"nuc2-1051-E405K_ts-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01956:allele-1","expression":"Not assayed or wild type"}]}]}},"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0000002","FYPO:0001985"],"is_obsolete":false,"multi_locus_annotated_genes":["SJAG_03118","SJAG_03689","SJAG_02621"],"name":"altered level of substance in cell during vegetative growth","references_by_uniquename":{"PMID:23786411":null,"PMID:25318672":null,"PMID:35226668":null,"PMID:36058798":null},"single_locus_annotated_genes":["SJAG_03575","SJAG_04697","SJAG_03689","SJAG_03351","SJAG_00426","SJAG_01956"],"single_locus_genotype_uniquenames":["cut23-415-A186T_ts-amino_acid_mutation-expression-not_assayed_or_wild_type","nuc2-1051-E405K_ts-amino_acid_mutation-expression-not_assayed_or_wild_type","apc2-361-E548K_ts-amino_acid_mutation-expression-not_assayed_or_wild_type","dcr1delta","gms1delta","bbl1-P363S-P363S-amino_acid_mutation-expression-not_assayed_or_wild_type"],"synonyms":[{"name":"abnormal level of substance in cell during vegetative growth","type":"exact"},{"name":"altered level of substance in cell during mitotic cell cycle","type":"related"}],"termid":"FYPO:0001323","terms_by_termid":{"FYECO:0000004":null,"FYECO:0000005":null,"FYECO:0000006":null,"FYECO:0000137":null,"FYECO:0000162":null,"FYPO:0001327":null,"FYPO:0002227":null,"FYPO:0003727":null,"FYPO:0004205":null,"FYPO:0004573":null,"FYPO:0004574":null,"FYPO:0004695":null,"FYPO:0004982":null,"FYPO_EXT:0000001":null}}


id: PBO:0085015
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Nexin-1 homolog; required for localizing membrane proteins from a prevacuolar/late endosomal compartment back to late Golgi; structural component of retromer membrane coat complex; forms a retromer subcomplex with Vps17p; required for recruiting the retromer complex to the endosome membranes; VPS5 has a paralog, YKR078W, that arose from the whole genome duplication","termid":"PBO:0085015"}


id: PBO:0031296
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-branched,_elongated,_multiseptate_cell","termid":"PBO:0031296"}


id: GO:0018589
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: dibutyltin + O2 + 2 H+ + 2 e- = H2O + beta-hydroxybutylbutyltin.","definition_xrefs":["UM-BBD_reactionID:r0645"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen","termid":"GO:0016705"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016491","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"di-n-butyltin dioxygenase activity","synonyms":[{"name":"DBT dioxygenase activity","type":"exact"}],"termid":"GO:0018589"}


id: PBO:0049896
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"HECT and RLD domain containing E3 ubiquitin protein ligase family member 6","termid":"PBO:0049896"}


id: GO:0003165
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of a Purkinje myocyte over time, from its formation to the mature structure. The Purkinje myocyte (also known as cardiac Purkinje fiber) is part of the cardiac conduction system that receives signals from the bundle of His and innervates the ventricular cardiac muscle.","definition_xrefs":["GOC:mtg_cardiac_conduct_nov11","GOC:mtg_heart"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ventricular cardiac muscle tissue development","termid":"GO:0003229"},{"relation_name":"part_of","term_name":"His-Purkinje system development","termid":"GO:0003164"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"Purkinje myocyte development","synonyms":[{"name":"cardiac Purkinje fiber development","type":"exact"}],"termid":"GO:0003165"}


id: PBO:0039750
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"apolipoprotein O pseudogene 1","termid":"PBO:0039750"}


id: PBO:0080751
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"X-box binding protein 1 pseudogene 1","termid":"PBO:0080751"}


id: PBO:0045625
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"double homeobox 4 like 37 (pseudogene)","termid":"PBO:0045625"}


id: PBO:0068227
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 5S ribosomal pseudogene 534","termid":"PBO:0068227"}


id: PBO:0057261
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 487a","termid":"PBO:0057261"}


id: PBO:0070323
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNY3 pseudogene 12","termid":"PBO:0070323"}


id: PBO:0068292
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Rho family GTPase 1","termid":"PBO:0068292"}


id: PBO:0089497
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"coenzyme A diphosphatase","termid":"PBO:0089497"}


id: GO:0044103
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: L-arabinose + NADP+ = L-arabinono-1,4-lactone + NADPH + H+.","definition_xrefs":["PMID:16326697","GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor","termid":"GO:0016616"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0003824","GO:0016491","GO:0003674"],"is_obsolete":false,"name":"L-arabinose 1-dehydrogenase (NADP+) activity","secondary_identifiers":["EC:1.1.1.376"],"termid":"GO:0044103"}


id: PBO:0043432
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CNIH3 antisense RNA 1","termid":"PBO:0043432"}


id: GO:1905838
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of telomeric D-loop disassembly.","definition_xrefs":["GO_REF:0000058","GOC:BHF","GOC:BHF_telomere","GOC:nc","GOC:TermGenie","PMID:15200954"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of telomeric loop disassembly","termid":"GO:1904533"},{"relation_name":"regulates","term_name":"telomeric D-loop disassembly","termid":"GO:0061820"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0006259"},{"rel_name":"regulates","termid":"GO:0032200"}],"interesting_parent_ids":["GO:0008150","GO:0032200","GO:0006259"],"is_obsolete":false,"name":"regulation of telomeric D-loop disassembly","termid":"GO:1905838"}


id: PBO:0045123
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cyclin D binding myb like transcription factor 1","termid":"PBO:0045123"}


id: PBO:0110172
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial translation factor Sls1","termid":"PBO:0110172"}


id: FYPO:0004134
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of RNA measured in a cell during a cellular response to diethyl maleate is lower than normal. Total RNA or a specific RNA may be affected.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased RNA level during vegetative growth","termid":"FYPO:0001117"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0006551"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0001320","FYPO:0000002","FYPO:0001985","FYPO:0006551"],"is_obsolete":false,"name":"decreased RNA level during cellular response to diethyl maleate","synonyms":[{"name":"decreased RNA accumulation during cellular response to diethyl maleate","type":"related"},{"name":"decreased RNA level during cellular response to DEM","type":"exact"},{"name":"decreased RNA level during cellular response to diethyl maleate during mitotic cell cycle","type":"related"},{"name":"decreased RNA level during cellular response to diethyl maleate during vegetative growth","type":"exact"},{"name":"decreased mRNA level during cellular response to diethyl maleate","type":"narrow"},{"name":"decreased transcript level during cellular response to diethyl maleate","type":"exact"},{"name":"reduced RNA level during cellular response to diethyl maleate","type":"exact"}],"termid":"FYPO:0004134"}


id: GO:0034767
data:
  {"annotated_genes":["SJAG_04551"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[98315],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1905665"}]},"cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of the directed movement of ions from one side of a membrane to the other.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of transmembrane transport","termid":"GO:0034764"},{"relation_name":"is_a","term_name":"regulation of monoatomic ion transmembrane transport","termid":"GO:0034765"},{"relation_name":"is_a","term_name":"positive regulation of monoatomic ion transport","termid":"GO:0043270"},{"relation_name":"positively_regulates","term_name":"monoatomic ion transmembrane transport","termid":"GO:0034220"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04551":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"positively_regulates","termid":"GO:0006810"},{"rel_name":"positively_regulates","termid":"GO:0055085"},{"rel_name":"regulates","termid":"GO:0055085"}],"interesting_parent_ids":["GO:0006810","GO:0055085","GO:0008150"],"is_obsolete":false,"name":"positive regulation of monoatomic ion transmembrane transport","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"activation of transmembrane ion transport","type":"narrow"},{"name":"positive regulation of ion membrane transport","type":"exact"},{"name":"positive regulation of ion transmembrane transport","type":"broad"},{"name":"positive regulation of transmembrane ion transport","type":"exact"},{"name":"stimulation of transmembrane ion transport","type":"narrow"},{"name":"up regulation of transmembrane ion transport","type":"exact"},{"name":"up-regulation of transmembrane ion transport","type":"exact"},{"name":"upregulation of transmembrane ion transport","type":"exact"}],"termid":"GO:0034767","terms_by_termid":{"GO:1905665":null}}


id: PBO:0046310
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"endonuclease, poly(U) specific","termid":"PBO:0046310"}


id: PR:Q10206
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A diphthamide biosynthesis protein 2 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx","PANTHER:PTHR10762:SF2","OMA:SCHPO03661"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"diphthamide biosynthesis protein 2 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC17D1.02","secondary_identifiers":["UniProtKB:Q10206"],"synonyms":[{"name":"Spom972h-DPH2","type":"exact"}],"termid":"PR:Q10206"}


id: GO:1990263
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. A MAPK cascade that occurs as a result of deprivation of nourishment.","definition_xrefs":["PMID:7501024","GOC:al"],"gene_count":0,"genotype_count":0,"name":"obsolete spore wall assembly MAPK cascade (obsolete GO:1990263)","synonyms":[{"name":"MAPK cascade in response to starvation","type":"exact"},{"name":"MAPK cascade involved in nutrient response signaling","type":"exact"}],"termid":"GO:1990263"}


id: PBO:0031174
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-mitotic_catastrophe_with_cut,_small_cell","termid":"PBO:0031174"}


id: MOD:01356
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively replaces an O3 hydrogen atom of a serine residue with a carbohydrate-like group composed of Hex1HexNAc1NeuAc1 linked through a glycosidic bond.","definition_xrefs":["PubMed:7856876","Unimod:149#S"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Hex1HexNAc1NeuAc1 glycosylated residue","termid":"MOD:00517"},{"relation_name":"is_a","term_name":"modified L-serine residue","termid":"MOD:00916"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:00693"}],"interesting_parent_ids":["MOD:00693"],"is_obsolete":false,"name":"Hex1HexNAc1NeuAc1 O-glycosylated serine","synonyms":[{"name":"Hex(1)HexNAc(1)NeuAc(1)","type":"related"},{"name":"Hex1HexNAc1NeuAc1","type":"related"}],"termid":"MOD:01356"}


id: PBO:0065523
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pentatricopeptide repeat domain 3","termid":"PBO:0065523"}


id: PBO:0064736
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"peptidylprolyl isomerase A pseudogene 72","termid":"PBO:0064736"}


id: PBO:0108678
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cytoplasmic poly(A) polymerase Cid13","termid":"PBO:0108678"}


id: PBO:0006295
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"secretory vesicle docking component Mso1 (predicted)","termid":"PBO:0006295"}


id: PATO:0000736
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0000736 dysfunctional value (obsolete PATO:0000736)","termid":"PATO:0000736"}


id: PBO:0070809
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L12 pseudogene 39","termid":"PBO:0070809"}


id: PBO:0056691
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"meiotic double-stranded break formation protein 1","termid":"PBO:0056691"}


id: PBO:0069428
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 693, pseudogene","termid":"PBO:0069428"}


id: PBO:0079340
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"testis-specific transcript, Y-linked 24, pseudogene","termid":"PBO:0079340"}


id: PBO:0003792
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"anaphase-promoting complex subunit Apc13","termid":"PBO:0003792"}


id: GO:0006779
data:
  {"annotated_genes":["SJAG_05283","SJAG_01192","SJAG_04944","SJAG_01155","SJAG_03961","SJAG_02896","SJAG_01841","SJAG_04397","SJAG_02876","SJAG_00097","SJAG_01786","SJAG_03173","SJAG_04109","SJAG_01372","SJAG_03862"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[89367,105720],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006784"},{"annotations":[91956,101355,110059,112800],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006783"},{"annotations":[113136,88527,91957,87166,90613,66633,89028,92551],"is_not":false,"rel_names":["part_of","is_a"],"summary":null,"term":"GO:0006782"},{"annotations":[111589,93975],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0019354"},{"annotations":[92552],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006780"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of any member of a large group of derivatives or analogs of porphyrin. Porphyrin consists of a ring of four pyrrole nuclei linked each to the next at their alpha positions through a methine group.","definition_xrefs":["GOC:jl","Wikipedia:Porphyrin#Natural_formation","ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"porphyrin-containing compound metabolic process","termid":"GO:0006778"},{"relation_name":"is_a","term_name":"tetrapyrrole biosynthetic process","termid":"GO:0033014"}],"gene_count":15,"genes_by_uniquename":{"SJAG_00097":null,"SJAG_01155":null,"SJAG_01192":null,"SJAG_01372":null,"SJAG_01786":null,"SJAG_01841":null,"SJAG_02876":null,"SJAG_02896":null,"SJAG_03173":null,"SJAG_03862":null,"SJAG_03961":null,"SJAG_04109":null,"SJAG_04397":null,"SJAG_04944":null,"SJAG_05283":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0033013"}],"interesting_parent_ids":["GO:0008150","GO:0033013"],"is_obsolete":false,"name":"porphyrin-containing compound biosynthetic process","references_by_uniquename":{"GO_REF:0000041":null,"GO_REF:0000107":null},"synonyms":[{"name":"porphyrin anabolism","type":"related"},{"name":"porphyrin biosynthesis","type":"related"},{"name":"porphyrin biosynthetic process","type":"related"},{"name":"porphyrin formation","type":"related"},{"name":"porphyrin synthesis","type":"related"}],"termid":"GO:0006779","terms_by_termid":{"GO:0006780":null,"GO:0006782":null,"GO:0006783":null,"GO:0006784":null,"GO:0019354":null}}


id: GO:0004532
data:
  {"annotated_genes":["SJAG_04818","SJAG_01836","SJAG_04369","SJAG_02275","SJAG_00966","SJAG_02540","SJAG_04006","SJAG_01431","SJAG_00841","SJAG_03132","SJAG_06586","SJAG_04519","SJAG_03745","SJAG_00081","SJAG_04824","SJAG_03276","SJAG_04407","SJAG_16455","SJAG_02993","SJAG_04153","SJAG_03876","SJAG_01822","SJAG_04084","SJAG_00401","SJAG_04587","SJAG_01798"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[88439,95785,97205,103644],"is_not":false,"summary":null,"term":"GO:0004532"},{"annotations":[99118,100576,99852,101434,98256,111486,86187,103966,111814,114426,88438,91811,95111,103641,104673,107432,112769],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0000175"},{"annotations":[86828,86521,91138],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004534"},{"annotations":[110602],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0008859"},{"annotations":[112770,103967,111819,109103,89591],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004535"},{"annotations":[89912],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1990838"}]},"cv_name":"molecular_function","definition":"Catalysis of the sequential cleavage of mononucleotides from a free 5' or 3' terminus of an RNA molecule.","definition_xrefs":["GOC:mah","ISBN:0198547684"],"direct_ancestors":[{"relation_name":"is_a","term_name":"exonuclease activity","termid":"GO:0004527"},{"relation_name":"is_a","term_name":"RNA nuclease activity","termid":"GO:0004540"}],"gene_count":26,"genes_by_uniquename":{"SJAG_00081":null,"SJAG_00401":null,"SJAG_00841":null,"SJAG_00966":null,"SJAG_01431":null,"SJAG_01798":null,"SJAG_01822":null,"SJAG_01836":null,"SJAG_02275":null,"SJAG_02540":null,"SJAG_02993":null,"SJAG_03132":null,"SJAG_03276":null,"SJAG_03745":null,"SJAG_03876":null,"SJAG_04006":null,"SJAG_04084":null,"SJAG_04153":null,"SJAG_04369":null,"SJAG_04407":null,"SJAG_04519":null,"SJAG_04587":null,"SJAG_04818":null,"SJAG_04824":null,"SJAG_06586":null,"SJAG_16455":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0140098"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0004527"},{"rel_name":"is_a","termid":"GO:0016788"},{"rel_name":"is_a","termid":"GO:0016787"}],"interesting_parent_ids":["GO:0004527","GO:0016787","GO:0003824","GO:0140098","GO:0003674","GO:0016788"],"is_obsolete":false,"name":"RNA exonuclease activity","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["Reactome:R-HSA-429961"],"synonyms":[{"name":"exoribonuclease activity","type":"exact"}],"termid":"GO:0004532","terms_by_termid":{"GO:0000175":null,"GO:0004532":null,"GO:0004534":null,"GO:0004535":null,"GO:0008859":null,"GO:1990838":null}}


id: PBO:0035813
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-eMTOC_absent_from_cell","termid":"PBO:0035813"}


id: PBO:0061709
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nuclear transport factor 2 pseudogene 4","termid":"PBO:0061709"}


id: GO:0072303
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that increases the frequency, rate or extent of metanephric glomerular mesangial cell proliferation.","definition_xrefs":["GOC:mtg_kidney_jan10"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of glomerular mesangial cell proliferation","termid":"GO:0072126"},{"relation_name":"is_a","term_name":"regulation of metanephric glomerular mesangial cell proliferation","termid":"GO:0072301"},{"relation_name":"positively_regulates","term_name":"metanephric glomerular mesangial cell proliferation involved in metanephros development","termid":"GO:0072262"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of glomerular metanephric mesangial cell proliferation","termid":"GO:0072303"}


id: FYPO:0002748
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of L-alanine measured in the cell is lower than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased cellular amino acid level","termid":"FYPO:0003985"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0001985","FYPO:0000002"],"is_obsolete":false,"name":"decreased cellular alanine level","synonyms":[{"name":"decreased cellular L-alanine level","type":"exact"},{"name":"decreased cellular alanine level during mitotic cell cycle","type":"related"},{"name":"decreased cellular alanine level during vegetative growth","type":"exact"},{"name":"decreased level of alanine in cell","type":"exact"},{"name":"reduced cellular alanine level","type":"exact"},{"name":"reduced level of alanine in cell","type":"exact"}],"termid":"FYPO:0002748"}


id: GO:0044353
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A membrane-bounded, uncoated intracellular vesicle formed by the process of micropinocytosis.","definition_xrefs":["PMID:14732047","PMID:14731589"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pinosome","termid":"GO:0044352"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0031410"},{"rel_name":"is_a","termid":"GO:0005768"}],"interesting_parent_ids":["GO:0031410","GO:0005768","GO:0005737","GO:0005575"],"is_obsolete":false,"name":"micropinosome","termid":"GO:0044353"}


id: GO:0061898
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: all-trans-retinoic acid + 2 H+ + O2 + 2 reduced [adrenodoxin] = all-trans-3,4-didehydro retinoic acid + 2 H2O + 2 oxidized [adrenodoxin].","definition_xrefs":["PMID:27059013"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen","termid":"GO:0016705"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0016491","GO:0003824"],"is_obsolete":false,"name":"all-trans retinoic acid 3,4-desaturase activity","termid":"GO:0061898"}


id: PBO:0069872
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 1159, pseudogene","termid":"PBO:0069872"}


id: PBO:0082079
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"5'-deoxynucleotidase involved in deoxyribonucleoside monophosphate degradation; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm and nucleus; non-essential gene; YBR242W has a paralog, YGL101W, that arose from the whole genome duplication","termid":"PBO:0082079"}


id: SO:0001152
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A type VIa beta turn with the following phi and psi sngles on amino acid residues 2 and 3: phi-2 = -60 degrees, psi-2 = 120 degrees, phi-3 = -90 degrees, psi-3 = 0 degrees.","definition_xrefs":["PMID:27428516"],"direct_ancestors":[{"relation_name":"is_a","term_name":"beta_turn_type_six_a","termid":"SO:0001151"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"SO:0000839"}],"interesting_parent_ids":["SO:0000839"],"is_obsolete":false,"name":"beta_turn_type_six_a_one","synonyms":[{"name":"beta turn type six a one","type":"exact"},{"name":"type VIa1 beta turn","type":"exact"},{"name":"type VIa1 turn","type":"exact"}],"termid":"SO:0001152"}


id: PR:Q9Y876
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- psh3 gene.","definition_xrefs":["UniProtKB:Q9Y876","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"secretory component protein psh3 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC409.20c","synonyms":[{"name":"Spom972h-psh3","type":"exact"}],"termid":"PR:Q9Y876"}


id: PR:O94569
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPBC1773.12 gene.","definition_xrefs":["PRO:DNx","UniProtKB:O94569"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized transcriptional regulatory protein C1773.12 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC1773.12","synonyms":[{"name":"Spom972h-SPBC1773.12","type":"exact"}],"termid":"PR:O94569"}


id: PBO:0036165
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_histone_H3-K9_methylation_during_vegetative_growth","termid":"PBO:0036165"}


id: GO:0006003
data:
  {"annotated_genes":["SJAG_03336","SJAG_00039","SJAG_02596","SJAG_02713"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[85186,89041,96101,97538],"is_not":false,"summary":null,"term":"GO:0006003"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways involving fructose 2,6-bisphosphate. The D enantiomer is an important regulator of the glycolytic and gluconeogenic pathways. It inhibits fructose 1,6-bisphosphatase and activates phosphofructokinase.","definition_xrefs":["ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phosphate-containing compound metabolic process","termid":"GO:0006796"},{"relation_name":"is_a","term_name":"organophosphate metabolic process","termid":"GO:0019637"},{"relation_name":"is_a","term_name":"carbohydrate derivative metabolic process","termid":"GO:1901135"}],"gene_count":4,"genes_by_uniquename":{"SJAG_00039":null,"SJAG_02596":null,"SJAG_02713":null,"SJAG_03336":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"fructose 2,6-bisphosphate metabolic process","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"fructose 2,6-bisphosphate metabolism","type":"exact"}],"termid":"GO:0006003","terms_by_termid":{"GO:0006003":null}}


id: PBO:0047597
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"FHAD1 antisense RNA 1","termid":"PBO:0047597"}


id: PBO:0110414
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SSBP3 pseudogene 4","termid":"PBO:0110414"}


id: GO:0090591
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the PEP-dependent, phosphoryl transfer-driven transport of substances across a membrane. The transport happens by catalysis of the reaction: protein N-phosphohistidine + N-acetyl-mannosamine(out) = protein histidine +N-acetyl- mannosamine-6-phosphate(in).","definition_xrefs":["PMID:9864311"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein-N(PI)-phosphohistidine-sugar phosphotransferase activity","termid":"GO:0008982"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0022857"}],"interesting_parent_ids":["GO:0022857","GO:0016740","GO:0005215","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"protein-N(PI)-phosphohistidine-N-acetyl-mannosamine phosphotransferase system transporter activity","termid":"GO:0090591"}


id: GO:2001122
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving a maltoheptaose.","definition_xrefs":["GOC:mengo_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oligosaccharide metabolic process","termid":"GO:0009311"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005975"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0005975","GO:0008150"],"is_obsolete":false,"name":"maltoheptaose metabolic process","synonyms":[{"name":"maltoheptaose metabolism","type":"exact"}],"termid":"GO:2001122"}


id: GO:0016146
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: GTP + H2O = GDP + phosphate.","definition_xrefs":["EC:3.6.1.48"],"gene_count":0,"genotype_count":0,"name":"obsolete protein-synthesizing GTPase activity, initiation (obsolete GO:0016146)","synonyms":[{"name":"protein-synthesizing GTPase activity, initiation","type":"exact"}],"termid":"GO:0016146"}


id: PBO:0017956
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"FRG1 family protein, involved in mRNA splicing (predicted)","termid":"PBO:0017956"}


id: GO:0046780
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process in which a symbiont inhibits or disrupts the splicing of host mRNA, thus interfering with normal host protein production. The host is defined as the larger of the organisms involved in a symbiotic interaction.","definition_xrefs":["PMID:19729513","PMID:12660167"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of RNA splicing","termid":"GO:0033119"},{"relation_name":"is_a","term_name":"symbiont-mediated suppression of host mRNA processing","termid":"GO:0039524"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"negatively_regulates","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0008150","GO:0010467"],"is_obsolete":false,"name":"symbiont-mediated suppression of host mRNA splicing","secondary_identifiers":["GO:0046781"],"synonyms":[{"name":"negative regulation by virus of host mRNA splicing","type":"narrow"},{"name":"suppression by virus of host mRNA splicing","type":"narrow"},{"name":"suppression by virus of host splicing factor activity","type":"exact"},{"name":"viral dispersion of host splicing factors","type":"narrow"},{"name":"viral inhibition of host mRNA splicing","type":"narrow"}],"termid":"GO:0046780"}


id: PBO:0001002
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"thiamine transporter Thi9","termid":"PBO:0001002"}


id: PBO:0060546
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NAV2 intronic transcript 1","termid":"PBO:0060546"}


id: GO:0042098
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The expansion of a T cell population by cell division. Follows T cell activation.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"T cell activation","termid":"GO:0042110"},{"relation_name":"is_a","term_name":"lymphocyte proliferation","termid":"GO:0046651"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"T cell proliferation","secondary_identifiers":["GO:0042111"],"synonyms":[{"name":"T lymphocyte proliferation","type":"exact"},{"name":"T-cell proliferation","type":"exact"},{"name":"T-lymphocyte proliferation","type":"exact"}],"termid":"GO:0042098"}


id: PBO:0077316
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transmembrane protein 52","termid":"PBO:0077316"}


id: PBO:0085726
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein involved in the inositol acylation of GlcN-PI; the inositol acylation of glucosaminyl phosphatidylinositol (GlcN-PI) forms glucosaminyl(acyl)phosphatidylinositol (GlcN(acyl)PI), an intermediate in the biosynthesis of glycosylphosphatidylinositol (GPI) anchors","termid":"PBO:0085726"}


id: GO:0050127
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: N-carbamoylsarcosine + H2O + 2 H+ = CO2 + NH4 + sarcosine.","definition_xrefs":["EC:3.5.1.59","RHEA:20057"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides","termid":"GO:0016811"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016810"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016787"}],"interesting_parent_ids":["GO:0003824","GO:0016810","GO:0016787","GO:0003674"],"is_obsolete":false,"name":"N-carbamoylsarcosine amidase activity","secondary_identifiers":["KEGG_REACTION:R01563","MetaCyc:N-CARBAMOYLSARCOSINE-AMIDASE-RXN"],"synonyms":[{"name":"CSHase activity","type":"related"},{"name":"N-carbamoylsarcosine amidohydrolase activity","type":"related"},{"name":"carbamoylsarcosine amidase activity","type":"related"}],"termid":"GO:0050127"}


id: GO:1904664
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of N-terminal peptidyl-methionine acetylation.","definition_xrefs":["PMID:20807799","GO_REF:0000058","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of protein acetylation","termid":"GO:1901984"},{"relation_name":"is_a","term_name":"negative regulation of protein maturation","termid":"GO:1903318"},{"relation_name":"is_a","term_name":"regulation of N-terminal peptidyl-methionine acetylation","termid":"GO:1904663"},{"relation_name":"negatively_regulates","term_name":"N-terminal peptidyl-methionine acetylation","termid":"GO:0017196"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0051604"},{"rel_name":"negatively_regulates","termid":"GO:0010467"},{"rel_name":"negatively_regulates","termid":"GO:0051604"}],"interesting_parent_ids":["GO:0008150","GO:0010467","GO:0051604"],"is_obsolete":false,"name":"negative regulation of N-terminal peptidyl-methionine acetylation","termid":"GO:1904664"}


id: GO:0008677
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: (R)-pantoate + NADP+ = 2-dehydropantoate + H+ + NADPH.","definition_xrefs":["EC:1.1.1.169","RHEA:16233"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor","termid":"GO:0016616"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0016491","GO:0003824"],"is_obsolete":false,"name":"2-dehydropantoate 2-reductase activity","secondary_identifiers":["KEGG_REACTION:R02472","MetaCyc:2-DEHYDROPANTOATE-REDUCT-RXN"],"synonyms":[{"name":"(R)-pantoate:NADP+ 2-oxidoreductase activity","type":"related"},{"name":"2-ketopantoate reductase activity","type":"related"},{"name":"2-ketopantoic acid reductase activity","type":"related"},{"name":"2-oxopantoate reductase activity","type":"related"},{"name":"KPA reductase activity","type":"related"},{"name":"ketopantoate reductase activity","type":"related"},{"name":"ketopantoic acid reductase activity","type":"related"}],"termid":"GO:0008677"}


id: PBO:0089229
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dynactin complex subunit 4","termid":"PBO:0089229"}


id: GO:0097408
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"Cellular inclusion consisting of circular areas filled with fine slender filaments about 10 nanometers in diameter, delimited by a wall of varying complexity (either a single continuous membrane or a tubular network consisting of a fine filamentous material giving the wall a honeycomb appearance). Fibrillary inclusions are found in the cytoplasm of giant cells of Dieters in the lateral vestibular nucleus of the rat; similar structures have been described in the ventral cochlear nucleus, spinal cord, and substantia nigra.","definition_xrefs":["NIF_Subcellular:sao967812059"],"direct_ancestors":[{"relation_name":"is_a","term_name":"inclusion body","termid":"GO:0016234"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"fibrillary inclusion","termid":"GO:0097408"}


id: GO:1900102
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of endoplasmic reticulum unfolded protein response.","definition_xrefs":["GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of signal transduction","termid":"GO:0009968"},{"relation_name":"is_a","term_name":"regulation of endoplasmic reticulum unfolded protein response","termid":"GO:1900101"},{"relation_name":"is_a","term_name":"negative regulation of response to endoplasmic reticulum stress","termid":"GO:1903573"},{"relation_name":"negatively_regulates","term_name":"endoplasmic reticulum unfolded protein response","termid":"GO:0030968"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"negatively_regulates","termid":"GO:0023052"},{"rel_name":"regulates","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"negative regulation of endoplasmic reticulum unfolded protein response","synonyms":[{"name":"down regulation of ER unfolded protein response","type":"exact"},{"name":"down regulation of SREBP-mediated signalling pathway","type":"related"},{"name":"down regulation of endoplasmic reticulum unfolded protein response","type":"exact"},{"name":"down regulation of erUPR","type":"exact"},{"name":"down-regulation of ER unfolded protein response","type":"exact"},{"name":"down-regulation of SREBP-mediated signalling pathway","type":"related"},{"name":"down-regulation of endoplasmic reticulum unfolded protein response","type":"exact"},{"name":"down-regulation of erUPR","type":"exact"},{"name":"downregulation of ER unfolded protein response","type":"exact"},{"name":"downregulation of SREBP-mediated signalling pathway","type":"related"},{"name":"downregulation of endoplasmic reticulum unfolded protein response","type":"exact"},{"name":"downregulation of erUPR","type":"exact"},{"name":"inhibition of ER unfolded protein response","type":"exact"},{"name":"inhibition of SREBP-mediated signalling pathway","type":"related"},{"name":"inhibition of endoplasmic reticulum unfolded protein response","type":"narrow"},{"name":"inhibition of erUPR","type":"exact"},{"name":"negative regulation of ER unfolded protein response","type":"exact"},{"name":"negative regulation of SREBP-mediated signalling pathway","type":"related"},{"name":"negative regulation of erUPR","type":"exact"}],"termid":"GO:1900102"}


id: PBO:0027058
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_cell_wall_polysaccharide_level","termid":"PBO:0027058"}


id: PBO:0072370
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein S26 pseudogene 56","termid":"PBO:0072370"}


id: GO:0015113
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Enables the transfer of nitrite (NO2-) ions from one side of a membrane to the other.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"inorganic anion transmembrane transporter activity","termid":"GO:0015103"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0022857","GO:0005215","GO:0003674"],"is_obsolete":false,"name":"nitrite transmembrane transporter activity","synonyms":[{"name":"nitrite/nitrate porter activity","type":"related"}],"termid":"GO:0015113"}


id: PBO:0084043
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"GPI lipid remodelase; responsible for introducing ceramides into GPI anchors having a C26:0 fatty acid in sn-2 of the glycerol moiety; can also use lyso-GPI protein anchors and various base resistant lipids as substrates; contains 14-16 transmembrane segments and several putative glycosylation and phosphorylation sites; null mutation is synthetically lethal with pkc1 deletion","termid":"PBO:0084043"}


id: PBO:0071924
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein S4X pseudogene 1","termid":"PBO:0071924"}


id: GO:0030420
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which a naturally transformable bacterium acquires the ability to take up exogenous DNA. This term should be applied only to naturally transformable bacteria, and should not be used in the context of artificially induced bacterial transformation.","definition_xrefs":["ISBN:1555811027","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular response to stimulus","termid":"GO:0051716"},{"relation_name":"part_of","term_name":"DNA-mediated transformation","termid":"GO:0009294"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"establishment of competence for transformation","termid":"GO:0030420"}


id: GO:0021908
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The series of molecular signals generated as a consequence of a retinoic acid receptor binding to one of its physiological ligands that results in the spatial identity of regions along the anterior-posterior axis of the spinal cord.","definition_xrefs":["GO_REF:0000021","GOC:dph","GOC:jid","GOC:cls","GOC:dgh","PMID:11262869"],"direct_ancestors":[{"relation_name":"is_a","term_name":"retinoic acid receptor signaling pathway","termid":"GO:0048384"},{"relation_name":"part_of","term_name":"spinal cord anterior/posterior patterning","termid":"GO:0021512"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"retinoic acid receptor signaling pathway involved in spinal cord anterior/posterior pattern formation","synonyms":[{"name":"retinoic acid receptor signalling pathway in spinal cord anterior-posterior patterning","type":"exact"}],"termid":"GO:0021908"}


id: GO:0031807
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a H1 histamine receptor.","definition_xrefs":["GOC:nln","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"G protein-coupled histamine receptor binding","termid":"GO:0031806"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0005515"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0005515","GO:0003674","GO:0005488"],"is_obsolete":false,"name":"H1 histamine receptor binding","synonyms":[{"name":"H1 histamine receptor ligand","type":"narrow"}],"termid":"GO:0031807"}


id: PBO:0052605
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"kaptin, actin binding protein","termid":"PBO:0052605"}


id: PBO:0072413
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein S27 pseudogene 18","termid":"PBO:0072413"}


id: PBO:0030175
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-slow_cell_population_growth_during_recovery_from_stationary_phase","termid":"PBO:0030175"}


id: GO:0101024
data:
  {"annotated_genes":["SJAG_04489","SJAG_05207","SJAG_03783","SJAG_03073","SJAG_00680","SJAG_03449","SJAG_04464","SJAG_01745","SJAG_03891","SJAG_01050","SJAG_00416","SJAG_03892","SJAG_01242","SJAG_00900"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[107193,115257,115644,115711],"is_not":false,"summary":null,"term":"GO:0101024"},{"annotations":[90022,97601],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0140515"},{"annotations":[99321,99906,115375,115374,102735,94136,92147,84188,115372,115373,87527,97056],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0007084"}]},"cv_name":"biological_process","definition":"A mitotic cell cycle process which results in the assembly, arrangement, or disassembly of the nuclear inner or outer membrane during mitosis.","definition_xrefs":["GOC:vw","PMID:15147872"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nuclear membrane organization","termid":"GO:0071763"},{"relation_name":"is_a","term_name":"mitotic cell cycle process","termid":"GO:1903047"},{"relation_name":"part_of","term_name":"mitotic nuclear division","termid":"GO:0140014"}],"gene_count":14,"genes_by_uniquename":{"SJAG_00416":null,"SJAG_00680":null,"SJAG_00900":null,"SJAG_01050":null,"SJAG_01242":null,"SJAG_01745":null,"SJAG_03073":null,"SJAG_03449":null,"SJAG_03783":null,"SJAG_03891":null,"SJAG_03892":null,"SJAG_04464":null,"SJAG_04489":null,"SJAG_05207":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0061024"},{"rel_name":"part_of","termid":"GO:0007049"},{"rel_name":"is_a","termid":"GO:0061024"}],"interesting_parent_ids":["GO:0007049","GO:0061024","GO:0008150"],"is_obsolete":false,"name":"mitotic nuclear membrane organization","references_by_uniquename":{"GO_REF:0000107":null,"PMID:21802294":null,"PMID:24184107":null,"PMID:28954740":null,"PMID:32243490":null},"synonyms":[{"name":"nuclear membrane organization involved in mitotic nuclear division","type":"exact"}],"termid":"GO:0101024","terms_by_termid":{"GO:0007084":null,"GO:0101024":null,"GO:0140515":null}}


id: PBO:0075993
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"STEAP1B antisense RNA 1","termid":"PBO:0075993"}


id: PBO:0064898
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protein phosphatase 2 regulatory subunit B'gamma pseudogene","termid":"PBO:0064898"}


id: PBO:0036011
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_protein_threonine_phosphorylation_during_vegetative_growth","termid":"PBO:0036011"}


id: GO:0051069
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving galactomannan, a polysaccharide composed of D-galactose and D-mannose. The mannose units form the backbone structure (a linear main chain) with the D-galactose as single side units.","direct_ancestors":[{"relation_name":"is_a","term_name":"substituted mannan metabolic process","termid":"GO:0006080"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005975"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0005975","GO:0008150"],"is_obsolete":false,"name":"galactomannan metabolic process","synonyms":[{"name":"galactomannan metabolism","type":"exact"}],"termid":"GO:0051069"}


id: PBO:0049383
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"general transcription factor IIIC subunit 5","termid":"PBO:0049383"}


id: PBO:0071122
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L21 pseudogene 124","termid":"PBO:0071122"}


id: PBO:0073206
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"semaphorin 3F","termid":"PBO:0073206"}


id: FYPO:0003644
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of RNA measured in a cell is too low to detect during a cellular response to thiamine starvation. Total RNA or a specific RNA may be affected.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased RNA level during cellular response to thiamine starvation","termid":"FYPO:0001244"},{"relation_name":"is_a","term_name":"RNA absent from cell during vegetative growth","termid":"FYPO:0003161"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0006551"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0006551","FYPO:0005447","FYPO:0000002","FYPO:0001985"],"is_obsolete":false,"name":"RNA absent from cell during cellular response to thiamine starvation","synonyms":[{"name":"RNA absent from cell during cellular response to thiamine starvation during mitotic cell cycle","type":"related"},{"name":"RNA absent from cell during cellular response to thiamine starvation during vegetative growth","type":"exact"},{"name":"RNA absent from cell during cellular response to vitamin B1 starvation","type":"exact"},{"name":"transcripts absent from cell during cellular response to thiamine starvation","type":"exact"},{"name":"undetectable RNA level during cellular response to thiamine starvation","type":"exact"}],"termid":"FYPO:0003644"}


id: PBO:0014261
data:
  {"annotation_feature_type":"gene","cv_name":"complementation","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"functionally complemented by S. cerevisiae PLC1","termid":"PBO:0014261"}


id: PBO:0081574
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein 501","termid":"PBO:0081574"}


id: PBO:0028511
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_histone_H3-K9_methylation_at_heterochromatin_island","termid":"PBO:0028511"}


id: PBO:0075045
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nucleolar RNA, C/D box 116-8","termid":"PBO:0075045"}


id: PBO:0043973
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"citrate synthase","termid":"PBO:0043973"}


id: PATO:0000482
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0000482 response value (obsolete PATO:0000482)","termid":"PATO:0000482"}


id: PBO:0060009
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MT-ND4L pseudogene 29","termid":"PBO:0060009"}


id: PBO:0066614
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Rhox homeobox family member 2B","termid":"PBO:0066614"}


id: GO:0016102
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of diterpenoid compounds, terpenoids with four isoprene units.","definition_xrefs":["GOC:mah","ISBN:0198547684"],"direct_ancestors":[{"relation_name":"is_a","term_name":"diterpenoid metabolic process","termid":"GO:0016101"},{"relation_name":"is_a","term_name":"terpenoid biosynthetic process","termid":"GO:0016114"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006629"}],"interesting_parent_ids":["GO:0008150","GO:0006629"],"is_obsolete":false,"name":"diterpenoid biosynthetic process","synonyms":[{"name":"diterpene biosynthesis","type":"narrow"},{"name":"diterpene biosynthetic process","type":"narrow"},{"name":"diterpenoid anabolism","type":"exact"},{"name":"diterpenoid biosynthesis","type":"exact"},{"name":"diterpenoid formation","type":"exact"},{"name":"diterpenoid synthesis","type":"exact"}],"termid":"GO:0016102"}


id: GO:0015662
data:
  {"annotated_genes":["SJAG_02399","SJAG_01435","SJAG_03866","SJAG_03850","SJAG_01129","SJAG_01669","SJAG_04258","SJAG_01400","SJAG_04167"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[97185,111253],"is_not":false,"summary":null,"term":"GO:0015662"},{"annotations":[104855,97802],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0005388"},{"annotations":[104037],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0043682"},{"annotations":[104038],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0140581"},{"annotations":[108531],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0008556"},{"annotations":[108532],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0008900"},{"annotations":[83938,83939,109960],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0008553"},{"annotations":[108533],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0008554"}]},"cv_name":"molecular_function","definition":"Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O = ADP + phosphate, to directly drive the transport of ions across a membrane. The reaction is characterized by the transient formation of a high-energy aspartyl-phosphoryl-enzyme intermediate.","definition_xrefs":["PMID:10600683","PMID:10322420"],"direct_ancestors":[{"relation_name":"is_a","term_name":"P-type transmembrane transporter activity","termid":"GO:0140358"}],"gene_count":9,"genes_by_uniquename":{"SJAG_01129":null,"SJAG_01400":null,"SJAG_01435":null,"SJAG_01669":null,"SJAG_02399":null,"SJAG_03850":null,"SJAG_03866":null,"SJAG_04167":null,"SJAG_04258":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0005215"}],"interesting_parent_ids":["GO:0003674","GO:0022857","GO:0005215"],"is_obsolete":false,"name":"P-type ion transporter activity","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism","type":"exact"},{"name":"P-type ATPase activity","type":"exact"},{"name":"ion transmembrane transporter activity, phosphorylative mechanism","type":"related"},{"name":"zinc, cadmium, cobalt, nickel, lead-efflux ATPase activity","type":"narrow"}],"termid":"GO:0015662","terms_by_termid":{"GO:0005388":null,"GO:0008553":null,"GO:0008554":null,"GO:0008556":null,"GO:0008900":null,"GO:0015662":null,"GO:0043682":null,"GO:0140581":null}}


id: GO:1905357
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of snRNA pseudouridine synthesis.","definition_xrefs":["GOC:TermGenie","PMID:27268497","GO_REF:0000058"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of RNA metabolic process","termid":"GO:0051253"},{"relation_name":"is_a","term_name":"regulation of snRNA pseudouridine synthesis","termid":"GO:1905356"},{"relation_name":"negatively_regulates","term_name":"snRNA pseudouridine synthesis","termid":"GO:0031120"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0016073"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"negatively_regulates","termid":"GO:0016073"}],"interesting_parent_ids":["GO:0016073","GO:0008150"],"is_obsolete":false,"name":"negative regulation of snRNA pseudouridine synthesis","synonyms":[{"name":"down regulation of snRNA pseudouridine synthesis","type":"exact"},{"name":"down-regulation of snRNA pseudouridine synthesis","type":"exact"},{"name":"downregulation of snRNA pseudouridine synthesis","type":"exact"},{"name":"inhibition of snRNA pseudouridine synthesis","type":"narrow"}],"termid":"GO:1905357"}


id: GO:1900168
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of glial cell-derived neurotrophic factor production.","definition_xrefs":["GOC:TermGenie","GOC:yaf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of cytokine production","termid":"GO:0001819"},{"relation_name":"is_a","term_name":"regulation of glial cell-derived neurotrophic factor production","termid":"GO:1900166"},{"relation_name":"positively_regulates","term_name":"glial cell-derived neurotrophic factor production","termid":"GO:0044467"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"positively_regulates","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0010467","GO:0008150"],"is_obsolete":false,"name":"positive regulation of glial cell-derived neurotrophic factor production","synonyms":[{"name":"activation of glial cell line-derived neurotrophic factor secretion","type":"narrow"},{"name":"positive regulation of GDNF production","type":"exact"},{"name":"positive regulation of glial cell line-derived neurotrophic factor secretion","type":"related"},{"name":"positive regulation of glial cell-derived neurotrophic factor secretion","type":"narrow"}],"termid":"GO:1900168"}


id: GO:0047689
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: L-aspartate = D-aspartate.","definition_xrefs":["EC:5.1.1.13","RHEA:14973"],"direct_ancestors":[{"relation_name":"is_a","term_name":"amino-acid racemase activity","termid":"GO:0047661"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016853"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016853","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"aspartate racemase activity","secondary_identifiers":["MetaCyc:ASPARTATE-RACEMASE-RXN","KEGG_REACTION:R00491"],"synonyms":[{"name":"D-aspartate racemase activity","type":"related"}],"termid":"GO:0047689"}


id: GO:0042185
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of m-xylene, 1,3-dimethylbenzene, a colorless, liquid aromatic hydrocarbon.","definition_xrefs":["GOC:jl","GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"m-xylene metabolic process","termid":"GO:0018949"},{"relation_name":"is_a","term_name":"xylene catabolic process","termid":"GO:0042184"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044248"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0044248","GO:0008150"],"is_obsolete":false,"name":"m-xylene catabolic process","secondary_identifiers":["MetaCyc:PWY-142"],"synonyms":[{"name":"m-xylene breakdown","type":"exact"},{"name":"m-xylene catabolism","type":"exact"},{"name":"m-xylene degradation","type":"exact"},{"name":"meta-xylene catabolic process","type":"exact"},{"name":"meta-xylene catabolism","type":"exact"}],"termid":"GO:0042185"}


id: PBO:0061525
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"neuronal vesicle trafficking associated 1","termid":"PBO:0061525"}


id: GO:0044590
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to iron molybdenum cofactor, the cofactor located at the active site of the molybdenum nitrogenase.","definition_xrefs":["GOC:mengo_curators","GOC:tt","PMID:18429691"],"direct_ancestors":[{"relation_name":"is_a","term_name":"iron-sulfur cluster binding","termid":"GO:0051536"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005488"}],"interesting_parent_ids":["GO:0005488","GO:0003674"],"is_obsolete":false,"name":"iron-sulfur-molybdenum cofactor binding","synonyms":[{"name":"FeMo co binding","type":"exact"},{"name":"FeMoco binding","type":"exact"}],"termid":"GO:0044590"}


id: GO:0098021
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"Component of the virus capsid (head), located on the outer head surface. Involved in the stabilization of the head structure and usually non-essential.","definition_xrefs":["GOC:bm","VZ:4398"],"direct_ancestors":[{"relation_name":"is_a","term_name":"virion component","termid":"GO:0044423"},{"relation_name":"part_of","term_name":"viral capsid","termid":"GO:0019028"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"viral capsid, decoration","synonyms":[{"name":"decoration protein","type":"related"}],"termid":"GO:0098021"}


id: GO:0052675
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 3-methylbutanol + NADP+ = 3-methylbutanal + NADPH + H+. 3-methylbutanal is also known as isovaleraldehyde.","definition_xrefs":["EC:1.1.1.265","KEGG_REACTION:R05686"],"direct_ancestors":[{"relation_name":"is_a","term_name":"alcohol dehydrogenase (NADP+) activity","termid":"GO:0008106"},{"relation_name":"is_a","term_name":"3-methylbutanal reductase [NAD(P)H] activity","termid":"GO:0046568"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016491","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"3-methylbutanal reductase (NADPH) activity","secondary_identifiers":["RHEA:18525"],"synonyms":[{"name":"3-methylbutanal reductase (NADP) activity","type":"exact"},{"name":"3-methylbutanol:NADP oxidoreductase activity","type":"exact"},{"name":"3-methylbutanol:NADP+ oxidoreductase activity","type":"related"},{"name":"3-methylbutyraldehyde reductase (NADP) activity","type":"exact"},{"name":"isoamyl alcohol oxidase (NADP) activity","type":"exact"}],"termid":"GO:0052675"}


id: PBO:0071223
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L23a pseudogene 64","termid":"PBO:0071223"}


id: PBO:0028925
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_transcription","termid":"PBO:0028925"}


id: PBO:0050181
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"3-hydroxy-3-methylglutaryl-CoA synthase 1","termid":"PBO:0050181"}


id: PBO:0029478
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-sensitive_to_cerulenin","termid":"PBO:0029478"}


id: SO:0001339
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"N2_N2_7_trimethylguanosine is a modified guanosine base feature.","direct_ancestors":[{"relation_name":"is_a","term_name":"modified_guanosine","termid":"SO:0001276"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"N2_N2_7_trimethylguanosine","secondary_identifiers":["RNAMOD:091"],"synonyms":[{"name":"N2,N2,7-trimethylguanosine","type":"exact"},{"name":"m2,2,7G","type":"exact"}],"termid":"SO:0001339"}


id: FYPO:0008032
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell cycle checkpoint phenotype in which the mitotic cell cycle spindle assembly checkpoint activation is normal (i.e. indistinguishable from wild type).","definition_xrefs":["PMID:36108046"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal mitotic spindle assembly checkpoint","termid":"FYPO:0003762"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0000298"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001312"}],"interesting_parent_ids":["FYPO:0000298","FYPO:0001312","FYPO:0000257","FYPO:0000631","FYPO:0001320","FYPO:0000002"],"is_obsolete":false,"name":"normal mitotic spindle checkpoint activation","termid":"FYPO:0008032"}


id: GO:0044077
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process in which a symbiont initiates, promotes, or enhances host receptor-mediated endocytosis, the uptake of external materials by cells, utilizing receptors to ensure specificity of transport. The host is defined as the larger of the organisms involved in a symbiotic interaction.","definition_xrefs":["MITRE:tk"],"direct_ancestors":[{"relation_name":"is_a","term_name":"symbiont-mediated perturbation of host cellular process","termid":"GO:0044068"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"symbiont-mediated perturbation of host receptor-mediated endocytosis","synonyms":[{"name":"modulation by symbiont of host receptor-mediated endocytosis","type":"exact"},{"name":"modulation of host receptor-mediated endocytosis by symbiont","type":"exact"},{"name":"regulation by symbiont of host receptor-mediated endocytosis","type":"exact"}],"termid":"GO:0044077"}


id: GO:1901326
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a tetracycline stimulus.","definition_xrefs":["GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to alcohol","termid":"GO:0097305"},{"relation_name":"is_a","term_name":"response to ketone","termid":"GO:1901654"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"response to tetracycline","termid":"GO:1901326"}


id: PBO:0051920
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"integrin subunit beta 3 binding protein","termid":"PBO:0051920"}


id: PBO:0078382
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transcriptional regulating factor 1","termid":"PBO:0078382"}


id: PBO:0081558
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein 480","termid":"PBO:0081558"}


id: GO:1900322
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of maltotetraose transport.","definition_xrefs":["GOC:mengo_curators","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of transport","termid":"GO:0051051"},{"relation_name":"is_a","term_name":"regulation of maltotetraose transport","termid":"GO:1900321"},{"relation_name":"negatively_regulates","term_name":"maltotetraose transport","termid":"GO:2001099"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"negatively_regulates","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0006810","GO:0008150"],"is_obsolete":false,"name":"negative regulation of maltotetraose transport","synonyms":[{"name":"down regulation of maltotetraose transport","type":"exact"},{"name":"down-regulation of maltotetraose transport","type":"exact"},{"name":"downregulation of maltotetraose transport","type":"exact"},{"name":"inhibition of maltotetraose transport","type":"narrow"}],"termid":"GO:1900322"}


id: PBO:0045119
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DMRT like family B with proline rich C-terminal 1","termid":"PBO:0045119"}


id: GO:2000966
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of cell wall polysaccharide catabolic process.","definition_xrefs":["GOC:mengo_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of cell wall macromolecule metabolic process","termid":"GO:0010981"},{"relation_name":"is_a","term_name":"regulation of polysaccharide metabolic process","termid":"GO:0032881"},{"relation_name":"is_a","term_name":"regulation of carbohydrate catabolic process","termid":"GO:0043470"},{"relation_name":"regulates","term_name":"cell wall polysaccharide catabolic process","termid":"GO:0044347"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0005975"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0005975","GO:0008150"],"is_obsolete":false,"name":"regulation of cell wall polysaccharide catabolic process","synonyms":[{"name":"regulation of cell wall polysaccharide breakdown","type":"exact"}],"termid":"GO:2000966"}


id: PR:Q9URM2
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPBC2G5.05 gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q9URM2"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transketolase (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC2G5.05","synonyms":[{"name":"Spom972h-SPBC2G5.05","type":"exact"},{"name":"TK (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:Q9URM2"}


id: FYPO:0001197
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of calcium ion measured in a cell is lower than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased level of substance in cell during vegetative growth","termid":"FYPO:0001329"},{"relation_name":"is_a","term_name":"altered cellular calcium level","termid":"FYPO:0001462"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001985","FYPO:0001320"],"is_obsolete":false,"name":"decreased cellular calcium level","synonyms":[{"name":"decreased calcium accumulation","type":"related"},{"name":"decreased cellular calcium ion level","type":"exact"},{"name":"decreased cellular calcium level during mitotic cell cycle","type":"related"},{"name":"decreased cellular calcium level during vegetative growth","type":"exact"},{"name":"reduced cellular calcium level","type":"exact"}],"termid":"FYPO:0001197"}


id: GO:0044464
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"OBSOLETE. Any constituent part of a cell, the basic structural and functional unit of all organisms.","definition_xrefs":["GOC:jl"],"gene_count":0,"genotype_count":0,"name":"obsolete cell part (obsolete GO:0044464)","synonyms":[{"name":"cellular subcomponent","type":"exact"},{"name":"protoplast","type":"related"}],"termid":"GO:0044464"}


id: PBO:0070452
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L3 pseudogene 9","termid":"PBO:0070452"}


id: GO:1900177
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of aflatoxin biosynthetic process.","definition_xrefs":["GOC:di"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of cellular biosynthetic process","termid":"GO:0031326"},{"relation_name":"is_a","term_name":"regulation of small molecule metabolic process","termid":"GO:0062012"},{"relation_name":"is_a","term_name":"regulation of secondary metabolite biosynthetic process","termid":"GO:1900376"},{"relation_name":"regulates","term_name":"aflatoxin biosynthetic process","termid":"GO:0045122"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0019748"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0008150","GO:0044281","GO:0019748"],"is_obsolete":false,"name":"regulation of aflatoxin biosynthetic process","synonyms":[{"name":"regulation of aflatoxin anabolism","type":"exact"},{"name":"regulation of aflatoxin biosynthesis","type":"exact"},{"name":"regulation of aflatoxin formation","type":"exact"},{"name":"regulation of aflatoxin synthesis","type":"exact"}],"termid":"GO:1900177"}


id: PBO:0054389
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1785","termid":"PBO:0054389"}


id: SO:0002293
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"The non-coding region of the mitochondrial genome that controls RNA and DNA synthesis.","definition_xrefs":["PMID:10968878"],"direct_ancestors":[{"relation_name":"has_origin","term_name":"mitochondrial_sequence","termid":"SO:0000737"},{"relation_name":"is_a","term_name":"origin_of_replication","termid":"SO:0000296"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial_control_region","secondary_identifiers":["https://en.wikipedia.org/wiki/MtDNA_control_region"],"synonyms":[{"name":"Mitochondrial A+T region","type":"exact"},{"name":"Mitochondrial DNA control region","type":"exact"},{"name":"Mitochondrial NCR","type":"exact"},{"name":"Mitochondrial noncoding region","type":"exact"},{"name":"MtDNA control region","type":"exact"},{"name":"MtDNA_control_region","type":"exact"}],"termid":"SO:0002293"}


id: GO:0033856
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 1-deoxy-D-xylulose 5-phosphate + 3-amino-2-oxopropyl phosphate = 2 H2O + H+ + phosphate + pyridoxine 5'-phosphate.","definition_xrefs":["RHEA:15265"],"direct_ancestors":[{"relation_name":"is_a","term_name":"transferase activity, transferring nitrogenous groups","termid":"GO:0016769"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016769"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003824","GO:0016740","GO:0003674","GO:0016769"],"is_obsolete":false,"name":"pyridoxine 5'-phosphate synthase activity","secondary_identifiers":["EC:2.6.99.2","KEGG_REACTION:R05838","MetaCyc:PDXJ-RXN"],"synonyms":[{"name":"1-deoxy-D-xylulose-5-phosphate:3-amino-2-oxopropyl phosphate 3-amino-2-oxopropyltransferase (phosphate-hydrolysing; cyclizing) activity","type":"related"},{"name":"PNP synthase activity","type":"related"},{"name":"pyridoxine 5-phosphate phospho lyase activity","type":"related"}],"termid":"GO:0033856"}


id: PBO:0085438
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Poly(A+) RNA-binding protein; key surveillance factor for the selective export of spliced mRNAs from the nucleus to the cytoplasm; preference for intron-containing genes; similar to Npl3p; HRB1 has a paralog, GBP2, that arose from the whole genome duplication","termid":"PBO:0085438"}


id: FYPO:0001960
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which the observed rate of DNA topoisomerase II activity is abnormal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal catalytic activity","termid":"FYPO:0000661"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000661"},{"rel_name":"is_a","termid":"FYPO:0000654"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000707"},{"rel_name":"is_a","termid":"FYPO:0000652"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000652","FYPO:0000654","FYPO:0000707","FYPO:0000661"],"is_obsolete":false,"name":"abnormal DNA topoisomerase II activity","synonyms":[{"name":"abnormal DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity","type":"exact"}],"termid":"FYPO:0001960"}


id: MOD:01840
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-isoleucine residue to L-allo-isoleucine.","definition_xrefs":["RESID:AA0546","PubMed:20805503","ChEBI:43433"],"direct_ancestors":[{"relation_name":"is_a","term_name":"stereoisomerized residue","termid":"MOD:00664"},{"relation_name":"is_a","term_name":"modified L-isoleucine residue","termid":"MOD:00910"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"L-allo-isoleucine","synonyms":[{"name":"(2S,3R)-2-amino-3-methylpentanoic acid","type":"exact"},{"name":"2-azanyl-3-methylpentanoic acid","type":"exact"},{"name":"3-methyl-norvaline","type":"exact"},{"name":"L-allo-isoleucine","type":"exact"},{"name":"L-threo-isoleucine","type":"exact"},{"name":"MOD_RES L-allo-isoleucine","type":"exact"},{"name":"allo-L-isoleucine","type":"exact"},{"name":"alpha-amino-beta-methylvaleric acid","type":"exact"}],"termid":"MOD:01840"}


id: GO:0048661
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the rate or extent of smooth muscle cell proliferation.","definition_xrefs":["CL:0000192","GOC:ebc"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of cell population proliferation","termid":"GO:0008284"},{"relation_name":"is_a","term_name":"regulation of smooth muscle cell proliferation","termid":"GO:0048660"},{"relation_name":"positively_regulates","term_name":"smooth muscle cell proliferation","termid":"GO:0048659"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of smooth muscle cell proliferation","synonyms":[{"name":"activation of smooth muscle cell proliferation","type":"narrow"},{"name":"positive regulation of SMC proliferation","type":"exact"},{"name":"stimulation of smooth muscle cell proliferation","type":"narrow"},{"name":"up regulation of smooth muscle cell proliferation","type":"exact"},{"name":"up-regulation of smooth muscle cell proliferation","type":"exact"},{"name":"upregulation of smooth muscle cell proliferation","type":"exact"}],"termid":"GO:0048661"}


id: GO:2000563
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of CD4-positive, alpha-beta T cell proliferation.","definition_xrefs":["GOC:obol"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of alpha-beta T cell proliferation","termid":"GO:0046641"},{"relation_name":"is_a","term_name":"positive regulation of CD4-positive, alpha-beta T cell activation","termid":"GO:2000516"},{"relation_name":"is_a","term_name":"regulation of CD4-positive, alpha-beta T cell proliferation","termid":"GO:2000561"},{"relation_name":"positively_regulates","term_name":"CD4-positive, alpha-beta T cell proliferation","termid":"GO:0035739"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"positively_regulates","termid":"GO:0007155"},{"rel_name":"regulates","termid":"GO:0007155"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0007155"],"is_obsolete":false,"name":"positive regulation of CD4-positive, alpha-beta T cell proliferation","termid":"GO:2000563"}


id: GO:0080043
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the transfer of a glucosyl group from UDP-glucose to the 3-hydroxy group of a quercetin molecule.","definition_xrefs":["PMID:15352060"],"direct_ancestors":[{"relation_name":"is_a","term_name":"UDP-glucosyltransferase activity","termid":"GO:0035251"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016757"}],"interesting_parent_ids":["GO:0016757","GO:0003824","GO:0016740","GO:0003674"],"is_obsolete":false,"name":"quercetin 3-O-glucosyltransferase activity","termid":"GO:0080043"}


id: PBO:0084595
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Merged open reading frame; does not encode a discrete protein; YJL017W was originally annotated as an independent ORF, but as a result of a sequence change, it was merged with an adjacent ORF into a single reading frame, designated YJL016W","termid":"PBO:0084595"}


id: GO:0051117
data:
  {"annotated_genes":["SJAG_00516"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[73054],"is_not":false,"summary":null,"term":"GO:0051117"}]},"cv_name":"molecular_function","definition":"Binding to an ATPase, any enzyme that catalyzes the hydrolysis of ATP.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"enzyme binding","termid":"GO:0019899"}],"gene_count":1,"genes_by_uniquename":{"SJAG_00516":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005515"}],"interesting_parent_ids":["GO:0005515","GO:0005488","GO:0003674"],"is_obsolete":false,"name":"ATPase binding","references_by_uniquename":{"GO_REF:0000033":null},"termid":"GO:0051117","terms_by_termid":{"GO:0051117":null}}


id: GO:0019254
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving carnitine, where metabolism is linked to CoA.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"carnitine metabolic process","termid":"GO:0009437"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"carnitine metabolic process, CoA-linked","secondary_identifiers":["MetaCyc:CARNMET-PWY"],"synonyms":[{"name":"carnitine metabolism, CoA-linked","type":"exact"}],"termid":"GO:0019254"}


id: PBO:0076785
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"trans-2,3-enoyl-CoA reductase","termid":"PBO:0076785"}


id: PATO:0000686
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0000686 absolute rate value (obsolete PATO:0000686)","termid":"PATO:0000686"}


id: GO:0005978
data:
  {"annotated_genes":["SJAG_00963","SJAG_01376","SJAG_01209"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[105085],"is_not":false,"summary":null,"term":"GO:0005978"},{"annotations":[77877,87129],"is_not":false,"rel_names":["negatively_regulates","regulates"],"summary":null,"term":"GO:0045719"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of glycogen, a polydisperse, highly branched glucan composed of chains of D-glucose residues.","definition_xrefs":["ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"glycogen metabolic process","termid":"GO:0005977"},{"relation_name":"is_a","term_name":"glucan biosynthetic process","termid":"GO:0009250"}],"gene_count":3,"genes_by_uniquename":{"SJAG_00963":null,"SJAG_01209":null,"SJAG_01376":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005975"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006091"}],"interesting_parent_ids":["GO:0006091","GO:0005975","GO:0008150"],"is_obsolete":false,"name":"glycogen biosynthetic process","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"secondary_identifiers":["MetaCyc:GLYCOGENSYNTH-PWY","MetaCyc:PWY-5067","MetaCyc:PWY-7900"],"synonyms":[{"name":"glycogen anabolism","type":"exact"},{"name":"glycogen biosynthesis","type":"exact"},{"name":"glycogen formation","type":"exact"},{"name":"glycogen synthesis","type":"exact"}],"termid":"GO:0005978","terms_by_termid":{"GO:0005978":null,"GO:0045719":null}}


id: GO:0042153
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Binding to proteins with similar structure/function to receptor protein tyrosine phosphatases.","definition_xrefs":["GOC:jl"],"gene_count":0,"genotype_count":0,"name":"obsolete RPTP-like protein binding (obsolete GO:0042153)","synonyms":[{"name":"RPTP-like protein binding","type":"exact"},{"name":"receptor protein tyrosine phosphatase-like protein binding","type":"exact"}],"termid":"GO:0042153"}


id: PBO:0047934
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"fragile site, BrdU type, rare, fra(12)(q24.2)","termid":"PBO:0047934"}


id: PBO:0027117
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abolished_premeiotic_DNA_replication_during_azygotic_meiosis","termid":"PBO:0027117"}


id: GO:0032349
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of aldosterone.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of aldosterone metabolic process","termid":"GO:0032346"},{"relation_name":"is_a","term_name":"regulation of aldosterone biosynthetic process","termid":"GO:0032347"},{"relation_name":"is_a","term_name":"positive regulation of steroid hormone biosynthetic process","termid":"GO:0090031"},{"relation_name":"is_a","term_name":"positive regulation of alcohol biosynthetic process","termid":"GO:1902932"},{"relation_name":"positively_regulates","term_name":"aldosterone biosynthetic process","termid":"GO:0032342"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0044281"},{"rel_name":"positively_regulates","termid":"GO:0006629"},{"rel_name":"positively_regulates","termid":"GO:0044281"},{"rel_name":"regulates","termid":"GO:0006629"}],"interesting_parent_ids":["GO:0044281","GO:0008150","GO:0006629"],"is_obsolete":false,"name":"positive regulation of aldosterone biosynthetic process","synonyms":[{"name":"activation of aldosterone biosynthetic process","type":"narrow"},{"name":"stimulation of aldosterone biosynthetic process","type":"narrow"},{"name":"up regulation of aldosterone biosynthetic process","type":"exact"},{"name":"up-regulation of aldosterone biosynthetic process","type":"exact"},{"name":"upregulation of aldosterone biosynthetic process","type":"exact"}],"termid":"GO:0032349"}


id: PBO:0031913
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MICOS complex subunit Mic26/27 (predicted)","termid":"PBO:0031913"}


id: PBO:0012026
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"WD repeat protein involved in transcriptional regulation (predicted)","termid":"PBO:0012026"}


id: GO:1901699
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a nitrogen compound stimulus.","definition_xrefs":["GOC:TermGenie","GOC:pr"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular response to chemical stimulus","termid":"GO:0070887"},{"relation_name":"is_a","term_name":"response to nitrogen compound","termid":"GO:1901698"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cellular response to nitrogen compound","synonyms":[{"name":"cellular response to nitrogen molecular entity","type":"exact"}],"termid":"GO:1901699"}


id: FYPO:0001373
data:
  {"alleles_by_uniquename":{"SJAG_01143:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_01143","name":"mid1delta","uniquename":"SJAG_01143:allele-1"},"SJAG_02392:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_02392","name":"pom1delta","uniquename":"SJAG_02392:allele-1"}},"annotation_feature_type":"genotype","cv_annotations":{"multi_locus_phenotype":[{"annotations":[115615],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0007177"}],"single_locus_phenotype":[{"annotations":[115634,115633],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0000731"},{"annotations":[115616,115605,115612,115604],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0007177"}]},"cv_name":"fission_yeast_phenotype","definition":"A cell phenotype in which the localization of a protein to the medial cortex is abnormal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal protein localization to cell cortex","termid":"FYPO:0006867"}],"gene_count":2,"genes_by_uniquename":{"SJAG_01143":null,"SJAG_01665":null,"SJAG_02392":null,"SJAG_03596":null,"SJAG_03703":null,"SJAG_04498":null},"genotype_count":3,"genotypes_by_uniquename":{"mid1delta":{"display_name":"mid1delta","display_uniquename":"mid1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01143:allele-1","expression":"Null"}]}]},"mid1delta__pom1delta":{"display_name":"mid1delta pom1delta","display_uniquename":"mid1delta__pom1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01143:allele-1","expression":"Null"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_02392:allele-1","expression":"Null"}]}]},"pom1delta":{"display_name":"pom1delta","display_uniquename":"pom1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_02392:allele-1","expression":"Null"}]}]}},"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000138"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0005447","FYPO:0000138","FYPO:0000002"],"is_obsolete":false,"multi_locus_annotated_genes":["SJAG_01143","SJAG_02392"],"name":"abnormal protein localization to medial cortex","references_by_uniquename":{"PMID:25866389":null},"single_locus_annotated_genes":["SJAG_02392","SJAG_01143"],"single_locus_genotype_uniquenames":["pom1delta","mid1delta"],"synonyms":[{"name":"abnormal protein localisation to medial cortex","type":"exact"},{"name":"abnormal protein localization to medial ring","type":"exact"}],"termid":"FYPO:0001373","terms_by_termid":{"FYECO:0000005":null,"FYECO:0000137":null,"FYPO:0000731":null,"FYPO:0007177":null,"FYPO_EXT:0000001":null}}


id: PBO:0079645
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ubiquitin conjugating enzyme E2 R2","termid":"PBO:0079645"}


id: PATO:0001754
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A peramorphic growth quality which is due to an earlier onset.","definition_xrefs":["PATOC:mh"],"direct_ancestors":[{"relation_name":"is_a","term_name":"peramorphic growth","termid":"PATO:0001752"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"predisplaced growth","synonyms":[{"name":"precocious growth","type":"exact"}],"termid":"PATO:0001754"}


id: GO:0052457
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process by which an organism modulates the frequency, rate or extent of the production of nitric oxide as part of the defense response of the symbiont organism. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction.","definition_xrefs":["GOC:mtg_pamgo"],"gene_count":0,"genotype_count":0,"name":"obsolete modulation by organism of defense-related symbiont nitric oxide production (obsolete GO:0052457)","synonyms":[{"name":"modulation by organism of defense-related symbiont NO production","type":"exact"},{"name":"modulation by organism of defense-related symbiont nitric oxide production","type":"exact"}],"termid":"GO:0052457"}


id: PBO:0068980
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 224, pseudogene","termid":"PBO:0068980"}


id: GO:0019117
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: a dihydroxyfluorene + O2 = the corresponding 2-hydroxy-4-(oxo-1,3-dihydro-2H-inden-ylidene) but-2-enoic acid.","definition_xrefs":["GOC:mah","UM-BBD_reactionID:r0422","UM-BBD_reactionID:r0415"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen","termid":"GO:0016702"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016491"],"is_obsolete":false,"name":"dihydroxyfluorene dioxygenase activity","secondary_identifiers":["EC:1.13.11.-"],"termid":"GO:0019117"}


id: PBO:0068890
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 131, pseudogene","termid":"PBO:0068890"}


id: PBO:0056163
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitotic arrest deficient 2 like 1","termid":"PBO:0056163"}


id: GO:0021560
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of the abducens nerve over time, from its formation to the mature structure. The motor function of the abducens nerve is to contract the lateral rectus which results in abduction of the eye.","definition_xrefs":["GOC:dgh","GOC:dph","ISBN:0838580343","GOC:cls","GO_REF:0000021","GOC:jid"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cranial nerve development","termid":"GO:0021545"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"abducens nerve development","synonyms":[{"name":"CN VI development","type":"related"},{"name":"cranial nerve 6 development","type":"exact"},{"name":"cranial nerve VI development","type":"exact"}],"termid":"GO:0021560"}


id: GO:0080035
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of progoitrin, a 2-hydroxy-but-3-enyl glucosinolate. Glucosinolates are substituted thioglucosides found in rapeseed products and related cruciferae, and progoitrin has been implicated in causing goiters in mammals and bitter taste in cruciferous vegetables.","definition_xrefs":["PMID:11560911","PMID:18945935"],"direct_ancestors":[{"relation_name":"is_a","term_name":"glucosinolate biosynthetic process","termid":"GO:0019761"},{"relation_name":"is_a","term_name":"secondary alcohol biosynthetic process","termid":"GO:1902653"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0019748"},{"rel_name":"is_a","termid":"GO:0006790"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0006790","GO:0008150","GO:0019748","GO:0044281"],"is_obsolete":false,"name":"2-hydroxy-but-3-enyl glucosinolate biosynthetic process","synonyms":[{"name":"2-hydroxy-but-3-enyl glucosinolate anabolism","type":"exact"},{"name":"2-hydroxy-but-3-enyl glucosinolate biosynthesis","type":"exact"},{"name":"2-hydroxy-but-3-enyl glucosinolate formation","type":"exact"},{"name":"2-hydroxy-but-3-enyl glucosinolate synthesis","type":"exact"},{"name":"progoitrin biosynthesis","type":"exact"},{"name":"progoitrin biosynthetic process","type":"exact"},{"name":"progoitrin synthesis","type":"exact"}],"termid":"GO:0080035"}


id: SO:0002144
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A histone 2AZ modification where the modification is the acetylation of the residue.","definition_xrefs":["PMID:24316985","PMID:27087541","PMID:19385636"],"direct_ancestors":[{"relation_name":"is_a","term_name":"histone_2A_acetylation_site","termid":"SO:0002142"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"SO:0000839"}],"interesting_parent_ids":["SO:0000839"],"is_obsolete":false,"name":"histone_2AZ_acetylation_site","synonyms":[{"name":"H2A.Zac","type":"exact"},{"name":"H2AZac","type":"exact"},{"name":"histone 2AZ acetylation site","type":"exact"}],"termid":"SO:0002144"}


id: GO:2000461
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that stops, prevents or reduces the frequency, rate or extent of eukaryotic cell surface binding.","definition_xrefs":["GOC:obol"],"gene_count":0,"genotype_count":0,"name":"obsolete negative regulation of eukaryotic cell surface binding (obsolete GO:2000461)","synonyms":[{"name":"negative regulation of eukaryotic cell surface binding","type":"exact"}],"termid":"GO:2000461"}


id: GO:0140680
data:
  {"annotated_genes":["SJAG_03664"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[113887],"is_not":false,"summary":null,"term":"GO:0140680"}]},"cv_name":"molecular_function","definition":"Catalysis of the removal of a methyl group from a di- or a monomethyl-lysine residue at position 36 of the histone H3 protein. This is a dioxygenase reaction that is dependent on Fe(II) and 2-oxoglutarate.","definition_xrefs":["PMID:20531378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"histone H3K36 demethylase activity","termid":"GO:0051864"}],"gene_count":1,"genes_by_uniquename":{"SJAG_03664":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0032452"},{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0140096"}],"interesting_parent_ids":["GO:0140096","GO:0003674","GO:0003824","GO:0032452","GO:0016491"],"is_obsolete":false,"name":"histone H3K36me/H3K36me2 demethylase activity","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["MetaCyc:RXN-8661","RHEA:42032","EC:1.14.11.27"],"synonyms":[{"name":"histone H3-di/monomethyl-lysine-36 demethylase activity","type":"exact"},{"name":"histone H3K36me demethylase activity","type":"related"},{"name":"histone H3K36me2 demethylase activity","type":"broad"}],"termid":"GO:0140680","terms_by_termid":{"GO:0140680":null}}


id: PBO:0028457
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_actomyosin_contractile_ring_morphology","termid":"PBO:0028457"}


id: PBO:0086139
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein required for mitochondrial ribosome small subunit biogenesis; null mutant is defective in respiration and in maturation of 15S rRNA; protein is localized to the mitochondrial inner membrane; null mutant interacts synthetically with prohibitin (Phb1p)","termid":"PBO:0086139"}


id: PBO:0077374
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transmembrane protein 115","termid":"PBO:0077374"}


id: PBO:0059553
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrially encoded tRNA-Thr (ACN)","termid":"PBO:0059553"}


id: GO:0035333
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The proteolytic cleavages to the Notch protein that occur as a result of ligand binding. Ligand binding at the cell surface exposes an otherwise inaccessible cleavage site in the extracellular portion of Notch, which when cleaved releases a membrane-tethered form of the Notch intracellular domain. Subsequent cleavage within the transmembrane domain then leads to the release of the soluble Notch intracellular domain (NICD).","definition_xrefs":["GOC:bf","PMID:12651094"],"direct_ancestors":[{"relation_name":"is_a","term_name":"membrane protein intracellular domain proteolysis","termid":"GO:0031293"},{"relation_name":"part_of","term_name":"Notch signaling pathway","termid":"GO:0007219"},{"relation_name":"part_of","term_name":"Notch receptor processing","termid":"GO:0007220"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"Notch receptor processing, ligand-dependent","synonyms":[{"name":"Notch S2 cleavage","type":"narrow"},{"name":"Notch S3 cleavage","type":"narrow"}],"termid":"GO:0035333"}


id: PBO:0074449
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"survival of motor neuron 1, telomeric","termid":"PBO:0074449"}


id: PBO:0038749
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"actin related protein 1A","termid":"PBO:0038749"}


id: PBO:0081634
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein 562","termid":"PBO:0081634"}


id: PBO:0031557
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_catalytic_activity","termid":"PBO:0031557"}


id: PBO:0057403
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 548h-5","termid":"PBO:0057403"}


id: PBO:0012038
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"armadillo repeat protein, involved in ribosomal large subunit biogenesis (predicted)","termid":"PBO:0012038"}


id: GO:0046719
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any virus-mediated process that modulates the levels of viral proteins in a cell.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of viral process","termid":"GO:0050792"},{"relation_name":"is_a","term_name":"regulation of biological quality","termid":"GO:0065008"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation by virus of viral protein levels in host cell","synonyms":[{"name":"regulation of viral protein levels","type":"exact"}],"termid":"GO:0046719"}


id: PBO:0000235
data:
  {"annotation_feature_type":"gene","cv_name":"EC numbers","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"2.7.7.1","termid":"PBO:0000235"}


id: GO:1903593
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of histamine secretion by mast cell.","definition_xrefs":["PMID:18253931","GOC:als","GOC:TermGenie","GO_REF:0000058"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of hormone secretion","termid":"GO:0046883"},{"relation_name":"is_a","term_name":"regulation of inflammatory response","termid":"GO:0050727"},{"relation_name":"is_a","term_name":"regulation of multicellular organismal process","termid":"GO:0051239"},{"relation_name":"regulates","term_name":"histamine secretion by mast cell","termid":"GO:0002553"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"regulates","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0023052","GO:0008150","GO:0006810"],"is_obsolete":false,"name":"regulation of histamine secretion by mast cell","termid":"GO:1903593"}


id: PR:Q9UUF7
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A coatomer subunit beta that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO02682","PANTHER:PTHR10635:SF0","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"coatomer subunit beta (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC146.14c","secondary_identifiers":["UniProtKB:Q9UUF7"],"synonyms":[{"name":"Spom972h-COPB1","type":"exact"},{"name":"beta-COP (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"beta-coat protein (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:Q9UUF7"}


id: PBO:0030675
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_septation_index","termid":"PBO:0030675"}


id: PBO:0036075
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_histone_H3-K14_acetylation_at_centromere_outer_repeat_during_vegetative_growth","termid":"PBO:0036075"}


id: PBO:0002351
data:
  {"annotation_feature_type":"gene","cv_name":"complementation","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"functionally complemented by S. cerevisiae YDR208W","termid":"PBO:0002351"}


id: PBO:0053825
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1089","termid":"PBO:0053825"}


id: GO:0097739
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the rate of ferrichrome biosynthetic process in response to an iron stimulus.","definition_xrefs":["GOC:al"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of ferrichrome biosynthetic process","termid":"GO:1905569"},{"relation_name":"part_of","term_name":"cellular response to iron ion","termid":"GO:0071281"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"negatively_regulates","termid":"GO:0019748"},{"rel_name":"regulates","termid":"GO:0019748"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0019748","GO:0008150"],"is_obsolete":false,"name":"negative regulation of ferrichrome biosynthetic process in response to iron","termid":"GO:0097739"}


id: PBO:0029546
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-viable_vegetative_cell_with_normal_cell_size","termid":"PBO:0029546"}


id: GO:0023027
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a major histocompatibility complex class I molecules via the antigen binding groove.","definition_xrefs":["GOC:mtg_signal","GOC:vw"],"direct_ancestors":[{"relation_name":"is_a","term_name":"MHC class I protein binding","termid":"GO:0042288"},{"relation_name":"part_of","term_name":"MHC class I protein complex binding","termid":"GO:0023024"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005515"},{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0005488","GO:0003674","GO:0005515"],"is_obsolete":false,"name":"MHC class I protein binding, via antigen binding groove","termid":"GO:0023027"}


id: PBO:0078607
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tripartite motif containing 61","termid":"PBO:0078607"}


id: PBO:0079966
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"USP9Y pseudogene 4","termid":"PBO:0079966"}


id: PBO:0056093
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"LYN proto-oncogene, Src family tyrosine kinase","termid":"PBO:0056093"}


id: PATO:0000531
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0000531 macronutrient sensitivity value (obsolete PATO:0000531)","termid":"PATO:0000531"}


id: FYPO:0004617
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"OBSOLETE. A cellular process phenotype observed in the vegetative growth phase of the life cycle in which minus-end specific microtubule depolymerization, i.e. the removal of tubulin dimers from the minus end of a microtubule, occurs at a greater rate, or speed, than normal.","definition_xrefs":["GO:0036078","PomBase:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete increased rate of microtubule depolymerization at minus end (obsolete FYPO:0004617)","synonyms":[{"name":"decreased microtubule stability","type":"related"},{"name":"increased microtubule depolymerization rate at minus end","type":"exact"},{"name":"increased microtubule minus end shrinkage","type":"related"},{"name":"increased rate of microtubule catastrophe at minus end","type":"related"},{"name":"increased rate of microtubule depolymerisation at minus end","type":"exact"},{"name":"increased rate of microtubule depolymerization at minus end during mitotic cell cycle","type":"related"},{"name":"increased rate of microtubule depolymerization at minus end during vegetative growth","type":"exact"},{"name":"increased rate of minus-end specific microtubule depolymerization","type":"exact"}],"termid":"FYPO:0004617"}


id: PBO:0030840
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_guanine_import","termid":"PBO:0030840"}


id: PBO:0078471
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-His (anticodon GTG) 1-9","termid":"PBO:0078471"}


id: GO:0140610
data:
  {"annotated_genes":["SJAG_04682"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[101088],"is_not":false,"summary":null,"term":"GO:0140610"}]},"cv_name":"molecular_function","definition":"Binding to a specific RNA molecule to prevent it from interacting with other partners or to inhibit its localization to the area of the cell or complex where it is active.","definition_xrefs":["PMID:29084823"],"direct_ancestors":[{"relation_name":"is_a","term_name":"molecular sequestering activity","termid":"GO:0140313"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04682":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0140313"}],"interesting_parent_ids":["GO:0140313","GO:0003674"],"is_obsolete":false,"name":"RNA sequestering activity","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0140610","terms_by_termid":{"GO:0140610":null}}


id: GO:0099021
data:
  {"annotated_genes":["SJAG_00790"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[89264],"is_not":false,"summary":null,"term":"GO:0099021"}]},"cv_name":"cellular_component","definition":"The volume enclosed by the membranes of the cortical endoplasmic reticulum.","definition_xrefs":["GOC:vw","GOC:dos"],"direct_ancestors":[{"relation_name":"is_a","term_name":"endoplasmic reticulum lumen","termid":"GO:0005788"},{"relation_name":"part_of","term_name":"cortical endoplasmic reticulum","termid":"GO:0032541"}],"gene_count":1,"genes_by_uniquename":{"SJAG_00790":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005783"},{"rel_name":"part_of","termid":"GO:0005938"}],"interesting_parent_ids":["GO:0005783","GO:0005938","GO:0005575","GO:0005737"],"is_obsolete":false,"name":"cortical endoplasmic reticulum lumen","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0099021","terms_by_termid":{"GO:0099021":null}}


id: GO:0102135
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: H+ + (22S)-22-hydroxycampest-4-en-3-one + NADPH + O2 = (22R,23R)-22,23-dihydroxy-campest-4-en-3-one + NADP + H2O.","definition_xrefs":["GOC:pz"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen","termid":"GO:0016709"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0003824","GO:0016491","GO:0003674"],"is_obsolete":false,"name":"(22S)-22-hydroxy-campest-4-en-3-one C-23 hydroxylase activity","secondary_identifiers":["MetaCyc:RXN-11530"],"termid":"GO:0102135"}


id: PATO:0002629
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"An intensity which is characterized by being very severe.","definition_xrefs":["PATO:MAH"],"direct_ancestors":[{"relation_name":"is_a","term_name":"intensity","termid":"PATO:0000049"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"profound intensity","termid":"PATO:0002629"}


id: PBO:0059988
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MT-ND4L pseudogene 8","termid":"PBO:0059988"}


id: PBO:0043051
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CHP1 pseudogene 1","termid":"PBO:0043051"}


id: SO:0002334
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A stop codon with the DNA sequence TAA.","direct_ancestors":[{"relation_name":"is_a","term_name":"stop_codon","termid":"SO:0000319"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ochre_stop_codon","synonyms":[{"name":"Ochre stop codon","type":"exact"}],"termid":"SO:0002334"}


id: GO:0071498
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a fluid shear stress stimulus. Fluid shear stress is the force acting on an object in a system where the fluid is moving across a solid surface.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular response to stress","termid":"GO:0033554"},{"relation_name":"is_a","term_name":"response to fluid shear stress","termid":"GO:0034405"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cellular response to fluid shear stress","termid":"GO:0071498"}


id: PBO:0078952
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-Arg (anticodon TCT) 3-2","termid":"PBO:0078952"}


id: GO:0009959
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The orientation of plant parts away from gravity.","definition_xrefs":["GOC:sm"],"direct_ancestors":[{"relation_name":"is_a","term_name":"gravitropism","termid":"GO:0009630"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative gravitropism","synonyms":[{"name":"shoot gravitropism","type":"narrow"}],"termid":"GO:0009959"}


id: PR:O42662
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A ribosomal RNA large subunit methyltransferase F that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx","OMA:SCHPO01875"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"methyltransferase-like protein C27D7.08c (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC27D7.08c","secondary_identifiers":["UniProtKB:O42662"],"synonyms":[{"name":"Spom972h-rlmF","type":"exact"}],"termid":"PR:O42662"}


id: PATO:0001034
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A physical quality inhering in a bearer by virtue of the relative change in the bearer's length or the bearer's volume when being stretched or squashed.","definition_xrefs":["PATOC:GVG"],"direct_ancestors":[{"relation_name":"is_a","term_name":"physical quality","termid":"PATO:0001018"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"strain","termid":"PATO:0001034"}


id: GO:0000401
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a DNA segment containing the open form of a four-way junction, also known as a Holliday junction, a structure where two DNA double strands are held together by reciprocal exchange of two of the four strands, one strand each from the two original helices. The open form of a four-way junction can be diagrammed without any of the strands crossing over.","definition_xrefs":["GOC:krc","PMID:15563464","ISBN:0815332181"],"direct_ancestors":[{"relation_name":"is_a","term_name":"four-way junction DNA binding","termid":"GO:0000400"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003677"}],"interesting_parent_ids":["GO:0003677","GO:0005488","GO:0003674"],"is_obsolete":false,"name":"open form four-way junction DNA binding","synonyms":[{"name":"open form Holliday junction binding","type":"exact"}],"termid":"GO:0000401"}


id: PBO:0047420
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"F-box and WD repeat domain containing 10B","termid":"PBO:0047420"}


id: MOD:01716
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"The protein modification reporter fragment produced by an Proteome Sciences TMT6plex-126 reagent acylated residue.","definition_xrefs":["PubMed:18688235"],"direct_ancestors":[{"relation_name":"derives_from","term_name":"TMT6plex reporter+balance reagent acylated residue","termid":"MOD:01715"},{"relation_name":"derives_from","term_name":"cysTMT6plex reporter+balance reagent cysteine disulfide","termid":"MOD:01821"},{"relation_name":"is_a","term_name":"modification reporter fragment","termid":"MOD:01520"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TMT6plex reporter fragment","synonyms":[{"name":"2,6-dimethyl-1-methylidenepiperidinium","type":"exact"},{"name":"cysTMT6plex reporter fragment","type":"exact"}],"termid":"MOD:01716"}


id: PBO:0088346
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SPX/EXS domain protein Spx2","termid":"PBO:0088346"}


id: PBO:0068904
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 146, pseudogene","termid":"PBO:0068904"}


id: SO:0000542
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one V-gene, one DJ-gene and one C-gene.","direct_ancestors":[{"relation_name":"has_part","term_name":"V_gene_segment","termid":"SO:0000466"},{"relation_name":"has_part","term_name":"C_gene_segment","termid":"SO:0000478"},{"relation_name":"has_part","term_name":"DJ_gene_segment","termid":"SO:0000572"},{"relation_name":"is_a","term_name":"vertebrate_immunoglobulin_T_cell_receptor_rearranged_gene_cluster","termid":"SO:0000938"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"V_DJ_C_cluster","synonyms":[{"name":"V DJ C cluster","type":"exact"},{"name":"V-(DJ)-C-CLUSTER","type":"exact"}],"termid":"SO:0000542"}


id: PBO:0048704
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glycine receptor alpha 1","termid":"PBO:0048704"}


id: GO:0004338
data:
  {"annotated_genes":["SJAG_01171","SJAG_03646","SJAG_05001","SJAG_01888","SJAG_02192"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[84515,91285,98121,98122,104253],"is_not":false,"summary":null,"term":"GO:0004338"}]},"cv_name":"molecular_function","definition":"Catalysis of the successive hydrolysis of beta-D-glucose units from the non-reducing ends of (1->3)-beta-D-glucans, releasing alpha-glucose.","definition_xrefs":["EC:3.2.1.58"],"direct_ancestors":[{"relation_name":"is_a","term_name":"beta-glucosidase activity","termid":"GO:0008422"}],"gene_count":5,"genes_by_uniquename":{"SJAG_01171":null,"SJAG_01888":null,"SJAG_02192":null,"SJAG_03646":null,"SJAG_05001":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016798"}],"interesting_parent_ids":["GO:0003674","GO:0016798","GO:0016787","GO:0003824"],"is_obsolete":false,"name":"glucan exo-1,3-beta-glucosidase activity","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["MetaCyc:3.2.1.58-RXN"],"synonyms":[{"name":"1,3-beta-glucan glucohydrolase activity","type":"broad"},{"name":"beta-1,3-glucan exo-hydrolase activity","type":"related"},{"name":"exo (1->3)-beta-glucanase activity","type":"related"},{"name":"exo-1,3-beta-D-glucanase activity","type":"related"},{"name":"exo-1,3-beta-glucanase activity","type":"related"},{"name":"exo-1,3-beta-glucosidase activity","type":"related"},{"name":"exo-beta-(1->3)-D-glucanase activity","type":"related"},{"name":"exo-beta-(1->3)-glucanohydrolase activity","type":"related"},{"name":"exo-beta-1,3-D-glucanase activity","type":"related"},{"name":"exo-beta-1,3-glucanase activity","type":"related"},{"name":"glucan 1,3-beta-glucosidase activity","type":"broad"}],"termid":"GO:0004338","terms_by_termid":{"GO:0004338":null}}


id: GO:0098572
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The side (leaflet) of the plastid thylakoid membrane that faces the stroma, and any proteins embedded in it or loosely bound to its surface.","definition_xrefs":["GOC:dos"],"direct_ancestors":[{"relation_name":"is_a","term_name":"side of membrane","termid":"GO:0098552"},{"relation_name":"part_of","term_name":"plastid thylakoid membrane","termid":"GO:0055035"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005737","GO:0005575"],"is_obsolete":false,"name":"stromal side of plastid thylakoid membrane","termid":"GO:0098572"}


id: PBO:0071336
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L28","termid":"PBO:0071336"}


id: PBO:0108914
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"STAG3 cohesin complex component","termid":"PBO:0108914"}


id: PBO:0077760
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TOMM20 pseudogene 2","termid":"PBO:0077760"}


id: PBO:0072876
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"stabilizer of axonemal microtubules 1","termid":"PBO:0072876"}


id: PBO:0043319
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CLIP1 antisense RNA 1","termid":"PBO:0043319"}


id: GO:0102562
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: UDP-beta-L-arabinofuranose + a [protein]-trans-4-hydroxy-L-proline = UDP + H+ + a protein-O-(beta-L-arabinofuranose)-trans-4-hydroxy-L-proline.","definition_xrefs":["EC:2.4.2.-","GOC:pz"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pentosyltransferase activity","termid":"GO:0016763"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0016757"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016740","GO:0016757"],"is_obsolete":false,"name":"hydroxyproline O-arbinofuranose transferase activity","secondary_identifiers":["MetaCyc:RXN-15011","RHEA:49472"],"termid":"GO:0102562"}


id: PBO:0002136
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SWI/SNF and RSC complex subunit Ssr1","termid":"PBO:0002136"}


id: GO:0030004
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process involved in the maintenance of an internal steady state of monovalent inorganic cations at the level of a cell.","definition_xrefs":["GOC:ai","GOC:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete cellular monovalent inorganic cation homeostasis (obsolete GO:0030004)","termid":"GO:0030004"}


id: PBO:0065450
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"proteasome 26S subunit, ATPase, 6 pseudogene 1","termid":"PBO:0065450"}


id: PBO:0088030
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Ubiquinol-cytochrome-c reductase; a Rieske iron-sulfur protein of the mitochondrial cytochrome bc1 complex; transfers electrons from ubiquinol to cytochrome c1 during respiration; during import, Rip1p is first imported into the mitochondrial matrix where it is processed, acquires its Fe-S cluster, and is folded, then is translocated into the inner membrane by the action of a homo-oligomer of Bcs1p, and finally is delivered by Bcs1p to Complex III for assembly","termid":"PBO:0088030"}


id: PBO:0087886
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Transcriptional repressor and activator; involved in repression of flocculation-related genes, and activation of stress responsive genes; has direct role in INO1 transcriptional memory; negatively regulated by cAMP-dependent protein kinase A subunit Tpk2p; premature stop codon (C1430T, Q477-stop) in SK1 background is linked to the aggressively invasive phenotype of SK1 relative to BY4741 (S288C)","termid":"PBO:0087886"}


id: PBO:0073667
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"signal induced proliferation associated 1 like 2","termid":"PBO:0073667"}


id: FYPO:0004357
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the phosphorylation of one or more specific proteins, or of specific protein sites, occurs to a lower extent than normal during mitosis.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased protein phosphorylation during vegetative growth","termid":"FYPO:0001838"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0002494"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0002274"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0002274","FYPO:0002494","FYPO:0000002","FYPO:0001320","FYPO:0005447","FYPO:0001985"],"is_obsolete":false,"name":"decreased protein phosphorylation during mitosis","secondary_identifiers":["FYPO:0002832"],"synonyms":[{"name":"decreased protein phosphorylation during mitosis during vegetative growth","type":"exact"},{"name":"decreased protein phosphorylation during mitotic M phase","type":"related"},{"name":"decreased protein phosphorylation during mitotic M-phase","type":"related"},{"name":"decreased protein phosphorylation during mitotic nuclear division","type":"exact"},{"name":"decreased protein/peptide phosphorylation during mitosis","type":"exact"},{"name":"reduced protein phosphorylation during mitosis","type":"exact"}],"termid":"FYPO:0004357"}


id: PR:O74423
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- ent1 gene.","definition_xrefs":["UniProtKB:O74423","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"epsin-1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC162.07","synonyms":[{"name":"Spom972h-ent1","type":"exact"}],"termid":"PR:O74423"}


id: PBO:0052123
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"potassium voltage-gated channel subfamily E regulatory subunit 1","termid":"PBO:0052123"}


id: PBO:0085807
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein of unknown function; ECM18 has a paralog, ICT1, that arose from the whole genome duplication","termid":"PBO:0085807"}


id: GO:0007370
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Formation of a ventral indentation (furrow) from the blastoderm epithelium, which is internalized to form a tube in the interior of the embryo, marking the start of gastrulation.","definition_xrefs":["ISBN:0879694238"],"direct_ancestors":[{"relation_name":"is_a","term_name":"anatomical structure formation involved in morphogenesis","termid":"GO:0048646"},{"relation_name":"part_of","term_name":"gastrulation involving germ band extension","termid":"GO:0010004"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"ventral furrow formation","termid":"GO:0007370"}


id: GO:0085035
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A projection from a cell or tissue that penetrates the host's cell wall and invaginates the host cell membrane.","definition_xrefs":["GOC:pamgo_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell projection","termid":"GO:0042995"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"haustorium","termid":"GO:0085035"}


id: GO:0047409
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: H2O + 1-(1-alkenyl)-sn-glycero-3-phosphoethanolamine = sn-glycero-3-phosphoethanolamine + an aldehyde.","definition_xrefs":["EC:3.3.2.5","MetaCyc:3.3.2.5-RXN"],"gene_count":0,"genotype_count":0,"name":"obsolete alkenylglycerophosphoethanolamine hydrolase activity (obsolete GO:0047409)","synonyms":[{"name":"1-(1-alkenyl)-sn-glycero-3-phosphoethanolamine aldehydohydrolase activity","type":"related"}],"termid":"GO:0047409"}


id: GO:0052691
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: UDP-beta-L-arabinofuranose = UDP-beta-L-arabinopyranose.","definition_xrefs":["RHEA:28350","EC:5.4.99.30"],"direct_ancestors":[{"relation_name":"is_a","term_name":"intramolecular transferase activity","termid":"GO:0016866"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016853"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016853"],"is_obsolete":false,"name":"UDP-arabinopyranose mutase activity","secondary_identifiers":["MetaCyc:RXN-11552"],"synonyms":[{"name":"UDP-L-Ara mutase activity","type":"related"},{"name":"UDP-L-arabinopyranose furanomutase activity","type":"related"},{"name":"UDP-L-arabinose mutase activity","type":"related"},{"name":"UDP-arabinopyranose pyranomutase activity","type":"exact"},{"name":"uridine-diphosphate-L-arabinose mutase activity","type":"related"}],"termid":"GO:0052691"}


id: SO:0000258
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A tRNA sequence that has a cysteine anticodon, and a 3' cysteine binding region.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"derives_from","term_name":"cysteine_tRNA_primary_transcript","termid":"SO:0000215"},{"relation_name":"is_a","term_name":"tRNA","termid":"SO:0000253"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cysteinyl_tRNA","synonyms":[{"name":"cysteinyl tRNA","type":"exact"},{"name":"cysteinyl-transfer RNA","type":"exact"},{"name":"cysteinyl-transfer ribonucleic acid","type":"exact"}],"termid":"SO:0000258"}


id: GO:0043595
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A layer surrounding a bacterial endospore found inside the outer endospore membrane, but outside the membrane surrounding the endospore core. It consists of peptidoglycan of a different chemical nature than that found in vegetative cell walls which results in less cross-linking of peptidoglycan.","definition_xrefs":["GOC:mlg"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular anatomical entity","termid":"GO:0110165"},{"relation_name":"part_of","term_name":"endospore external encapsulating structure","termid":"GO:0043591"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005618"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575","GO:0005618"],"is_obsolete":false,"name":"endospore cortex","termid":"GO:0043595"}


id: GO:0033750
data:
  {"annotated_genes":["SJAG_01065","SJAG_00178","SJAG_03882","SJAG_01358","SJAG_01338","SJAG_04940","SJAG_02274","SJAG_03299","SJAG_04148","SJAG_01391","SJAG_04379","SJAG_03012","SJAG_02210","SJAG_01449","SJAG_01013","SJAG_00753","SJAG_00471","SJAG_03719","SJAG_02250","SJAG_04308","SJAG_03658","SJAG_03729","SJAG_03496","SJAG_04721","SJAG_02757","SJAG_03593","SJAG_01339"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[98042,113808,85988,99174,101913,112393,114312,95803,87273],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0000055"},{"annotations":[95978,87274,99175,93255],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0000056"},{"annotations":[100119,85224,99574,107620,112330,93248,87900,91155,92305,97558,101551,102327,98821,106616,90176,96580],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0000054"}]},"cv_name":"biological_process","definition":"A process in which a ribosome is transported to, and/or maintained in, a specific location.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"organelle localization","termid":"GO:0051640"}],"gene_count":27,"genes_by_uniquename":{"SJAG_00178":null,"SJAG_00471":null,"SJAG_00753":null,"SJAG_01013":null,"SJAG_01065":null,"SJAG_01338":null,"SJAG_01339":null,"SJAG_01358":null,"SJAG_01391":null,"SJAG_01449":null,"SJAG_02210":null,"SJAG_02250":null,"SJAG_02274":null,"SJAG_02757":null,"SJAG_03012":null,"SJAG_03299":null,"SJAG_03496":null,"SJAG_03593":null,"SJAG_03658":null,"SJAG_03719":null,"SJAG_03729":null,"SJAG_03882":null,"SJAG_04148":null,"SJAG_04308":null,"SJAG_04379":null,"SJAG_04721":null,"SJAG_04940":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0051179","GO:0008150"],"is_obsolete":false,"name":"ribosome localization","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["GO:0033753"],"synonyms":[{"name":"establishment of ribosome localisation","type":"related"},{"name":"establishment of ribosome localization","type":"related"},{"name":"ribosome localisation","type":"related"}],"termid":"GO:0033750","terms_by_termid":{"GO:0000054":null,"GO:0000055":null,"GO:0000056":null}}


id: GO:2000669
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of dendritic cell apoptotic process.","definition_xrefs":["GOC:mtg_apoptosis","GOC:obol"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of leukocyte apoptotic process","termid":"GO:2000107"},{"relation_name":"is_a","term_name":"regulation of dendritic cell apoptotic process","termid":"GO:2000668"},{"relation_name":"negatively_regulates","term_name":"dendritic cell apoptotic process","termid":"GO:0097048"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of dendritic cell apoptotic process","synonyms":[{"name":"negative regulation of dendritic cell apoptosis","type":"narrow"}],"termid":"GO:2000669"}


id: GO:0071036
data:
  {"annotated_genes":["SJAG_03745","SJAG_03984"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[88431,109448],"is_not":false,"summary":null,"term":"GO:0071036"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways occurring in the nucleus and resulting in the breakdown of a small nucleolar RNA (snoRNA) molecule, initiated by the enzymatic addition of a sequence of adenylyl residues (polyadenylation) at the 3' end the target snoRNA.","definition_xrefs":["GOC:krc","GOC:dgf","PMID:15935758"],"direct_ancestors":[{"relation_name":"is_a","term_name":"sno(s)RNA catabolic process","termid":"GO:0016077"},{"relation_name":"is_a","term_name":"nuclear RNA surveillance","termid":"GO:0071027"}],"gene_count":2,"genes_by_uniquename":{"SJAG_03745":null,"SJAG_03984":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0016074"}],"interesting_parent_ids":["GO:0008150","GO:0016074"],"is_obsolete":false,"name":"nuclear polyadenylation-dependent snoRNA catabolic process","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"nuclear poly(A)-dependent snoRNA catabolic process","type":"related"}],"termid":"GO:0071036","terms_by_termid":{"GO:0071036":null}}


id: GO:0051746
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the cyclization of 3(S)-oxidosqualene to (3S,13S,14R)-malabarica-8,17,21-trien-3-ol (thalianol).","definition_xrefs":["PMID:15125655","RHEA:26160"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidosqualene cyclase activity","termid":"GO:0031559"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016853"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003824","GO:0016853","GO:0003674"],"is_obsolete":false,"name":"thalianol synthase activity","secondary_identifiers":["EC:5.4.99.31"],"termid":"GO:0051746"}


id: PBO:0067015
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 25, pseudogene","termid":"PBO:0067015"}


id: MOD:01580
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively replaces the O4'-hydrogen atom of a tyrosine residue with the Applied Biosystems iTRAQ8plex-121 reporter+balance group.","definition_xrefs":["Unimod:731#Y"],"direct_ancestors":[{"relation_name":"is_a","term_name":"modified L-tyrosine residue","termid":"MOD:00919"},{"relation_name":"is_a","term_name":"iTRAQ8plex-121 reporter+balance reagent acylated residue","termid":"MOD:01577"},{"relation_name":"is_a","term_name":"iTRAQ8plex reporter+balance reagent O-acylated residue","termid":"MOD:01714"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:00649"}],"interesting_parent_ids":["MOD:00649"],"is_obsolete":false,"name":"iTRAQ8plex-121 reporter+balance reagent O4'-acylated tyrosine","synonyms":[{"name":"(4-methylpiperazin-1-yl)acetyl","type":"exact"},{"name":"Accurate mass for 115, 118, 119 & 121","type":"related"},{"name":"Applied Biosystems iTRAQ(TM) multiplexed quantitation chemistry","type":"related"},{"name":"iTRAQ8plex:13C(6)15N(2)","type":"related"}],"termid":"MOD:01580"}


id: PBO:0077670
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TNFRSF14 antisense RNA 1","termid":"PBO:0077670"}


id: GO:0031241
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The side (leaflet) of the outer membrane that faces the periplasm of the cell.","definition_xrefs":["GOC:mtg_sensu","GOC:mlg"],"direct_ancestors":[{"relation_name":"is_a","term_name":"side of membrane","termid":"GO:0098552"},{"relation_name":"part_of","term_name":"cell outer membrane","termid":"GO:0009279"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"periplasmic side of cell outer membrane","synonyms":[{"name":"internal leaflet of cell outer membrane","type":"exact"},{"name":"internal side of cell outer membrane","type":"exact"},{"name":"internal side of outer membrane","type":"exact"}],"termid":"GO:0031241"}


id: PBO:0077053
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TNF and HNRNPL related immunoregulatory long non-coding RNA","termid":"PBO:0077053"}


id: GO:0071906
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a CRD (context dependent regulatory) domain, a domain of about 130 residues that is the most divergent region among the LEF/TCF proteins.","definition_xrefs":["GOC:yaf","PMID:19460168"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein domain specific binding","termid":"GO:0019904"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0005515"}],"interesting_parent_ids":["GO:0005515","GO:0005488","GO:0003674"],"is_obsolete":false,"name":"CRD domain binding","synonyms":[{"name":"context dependent regulatory domain binding","type":"exact"}],"termid":"GO:0071906"}


id: GO:0043062
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of structures in the space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane, and also covers the host cell environment outside an intracellular parasite.","definition_xrefs":["GOC:dph","GOC:mah","GOC:jl","GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular component organization","termid":"GO:0016043"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"extracellular structure organization","synonyms":[{"name":"extracellular structure organisation","type":"exact"},{"name":"extracellular structure organization and biogenesis","type":"exact"}],"termid":"GO:0043062"}


id: PBO:0073549
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SHANK2 antisense RNA 1","termid":"PBO:0073549"}


id: PBO:0067324
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 415, pseudogene","termid":"PBO:0067324"}


id: PBO:0057711
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 1297","termid":"PBO:0057711"}


id: GO:0031557
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. A process which directly activates any of the steps required for programmed cell death as a result of a chemical stimulus.","definition_xrefs":["GOC:mtg_apoptosis","GOC:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete induction of programmed cell death in response to chemical stimulus (obsolete GO:0031557)","synonyms":[{"name":"induction of programmed cell death in response to chemical stimulus","type":"exact"},{"name":"induction of programmed cell death in response to chemical substance","type":"exact"}],"termid":"GO:0031557"}


id: GO:0030962
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The dihydroxylation of peptidyl-arginine to form peptidyl-3,4-dihydroxy-L-arginine.","definition_xrefs":["RESID:AA0369","PMID:10978343"],"direct_ancestors":[{"relation_name":"is_a","term_name":"peptidyl-arginine hydroxylation","termid":"GO:0030961"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"peptidyl-arginine dihydroxylation to peptidyl-3,4-dihydroxy-L-arginine","termid":"GO:0030962"}


id: GO:0034209
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The addition of an acetyl group to a sterol molecule. An acetyl group is CH3CO-, derived from acetic [ethanoic] acid.","definition_xrefs":["GOC:rb","PMID:18034159"],"gene_count":0,"genotype_count":0,"name":"obsolete sterol acetylation (obsolete GO:0034209)","termid":"GO:0034209"}


id: GO:0000338
data:
  {"annotated_genes":["SJAG_00776","SJAG_04948","SJAG_04011","SJAG_02341","SJAG_03733","SJAG_00720","SJAG_02764","SJAG_05977","SJAG_03325","SJAG_00795"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[85845,87637,89066,89181,91475,97478,101458,102659,105179,106518],"is_not":false,"summary":null,"term":"GO:0000338"}]},"cv_name":"biological_process","definition":"The removal of a ubiquitin-like protein of the NEDD8 type from a protein.","definition_xrefs":["GOC:krc"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein modification by small protein removal","termid":"GO:0070646"}],"gene_count":10,"genes_by_uniquename":{"SJAG_00720":null,"SJAG_00776":null,"SJAG_00795":null,"SJAG_02341":null,"SJAG_02764":null,"SJAG_03325":null,"SJAG_03733":null,"SJAG_04011":null,"SJAG_04948":null,"SJAG_05977":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0070647"}],"interesting_parent_ids":["GO:0008150","GO:0070647"],"is_obsolete":false,"name":"protein deneddylation","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["GO:0010388"],"synonyms":[{"name":"cullin deneddylation","type":"narrow"}],"termid":"GO:0000338","terms_by_termid":{"GO:0000338":null}}


id: PBO:0089441
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cobalamin (vitamin B12) biosynthesis CobW-like protein","termid":"PBO:0089441"}


id: PBO:0073317
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"serine hydrolase like 2","termid":"PBO:0073317"}


id: GO:1990625
data:
  {"annotated_genes":["SJAG_00690","SJAG_02592","SJAG_00169","SJAG_03869","SJAG_01942","SJAG_00786"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[88698,88997,90545,95499,105865,111769],"is_not":false,"summary":null,"term":"GO:1990625"}]},"cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the rate of cytoplasmic translation initiation as a result of a stimulus indicating the organism is under stress.","definition_xrefs":["GOC:vw","PMID:12242291"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of translation in response to stress","termid":"GO:0032055"},{"relation_name":"is_a","term_name":"negative regulation of translational initiation in response to stress","termid":"GO:0032057"},{"relation_name":"is_a","term_name":"negative regulation of cytoplasmic translational initiation","termid":"GO:1904689"},{"relation_name":"is_a","term_name":"regulation of cytoplasmic translational initiation in response to stress","termid":"GO:1990611"}],"gene_count":6,"genes_by_uniquename":{"SJAG_00169":null,"SJAG_00690":null,"SJAG_00786":null,"SJAG_01942":null,"SJAG_02592":null,"SJAG_03869":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"negatively_regulates","termid":"GO:0010467"},{"rel_name":"regulates","termid":"GO:0010467"},{"rel_name":"regulates","termid":"GO:0002181"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0002181","GO:0008150","GO:0010467"],"is_obsolete":false,"name":"negative regulation of cytoplasmic translational initiation in response to stress","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:1990625","terms_by_termid":{"GO:1990625":null}}


id: PBO:0072177
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein S16 pseudogene 4","termid":"PBO:0072177"}


id: FYPO:0004321
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype in which the amount of DNA measured in a cell differs from normal when the cell is in the vegetative growth phase of the life cycle.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"altered level of substance in cell during vegetative growth","termid":"FYPO:0001323"},{"relation_name":"is_a","term_name":"altered DNA level","termid":"FYPO:0004320"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001320","FYPO:0001985"],"is_obsolete":false,"name":"altered DNA level during vegetative growth","synonyms":[{"name":"abnormal DNA content during vegetative growth","type":"exact"},{"name":"abnormal DNA level during vegetative growth","type":"exact"},{"name":"altered DNA content during vegetative growth","type":"exact"},{"name":"altered DNA level during mitotic cell cycle","type":"related"},{"name":"altered cellular DNA level during vegetative growth","type":"exact"}],"termid":"FYPO:0004321"}


id: PBO:0091256
data:
  {"annotation_feature_type":"gene","cv_name":"name_description","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Suppressor of cut TWenty","termid":"PBO:0091256"}


id: FYPO:0003336
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which one or more proteins is localized to the actomyosin contractile ring for a longer time than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased duration of protein localization to cell division site","termid":"FYPO:0002527"},{"relation_name":"is_a","term_name":"abnormal protein localization to actomyosin contractile ring","termid":"FYPO:0002560"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0000032"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0000138","FYPO:0001320","FYPO:0001985","FYPO:0000002","FYPO:0000032","FYPO:0000631","FYPO:0005447"],"is_obsolete":false,"name":"increased duration of protein localization to actomyosin contractile ring","synonyms":[{"name":"increased duration of protein localisation to actomyosin contractile ring","type":"exact"},{"name":"increased duration of protein localization to actomyosin contractile ring during mitotic cell cycle","type":"related"},{"name":"increased duration of protein localization to actomyosin contractile ring during vegetative growth","type":"exact"},{"name":"increased duration of protein localization to actomyosin contractile ring involved in mitotic cytokinesis","type":"exact"},{"name":"increased duration of protein localization to contractile ring","type":"exact"},{"name":"increased duration of protein localization to cytokinetic contractile ring","type":"exact"},{"name":"increased duration of protein localization to mitotic contractile ring","type":"exact"},{"name":"increased duration of protein recruitment to actomyosin contractile ring","type":"related"},{"name":"prolonged protein localization to actomyosin contractile ring","type":"exact"}],"termid":"FYPO:0003336"}


id: GO:0018141
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The chemical reactions and pathways resulting in the formation of a peptidyl cysteine-peptidyl lysine cross-link by the condensation of a cysteine thiol with the carbonyl of the preceding residue and alpha-beta dehydrogenation.","definition_xrefs":["RESID:AA0245"],"gene_count":0,"genotype_count":0,"name":"obsolete peptide cross-linking via L-lysine thiazolecarboxylic acid (obsolete GO:0018141)","termid":"GO:0018141"}


id: PBO:0028741
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_growth_on_silver","termid":"PBO:0028741"}


id: PBO:0002375
data:
  {"annotation_feature_type":"gene","cv_name":"disease_associated","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RAPADILINO syndrome","termid":"PBO:0002375"}


id: GO:0098728
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The self-renewing division of a germline stem cell, to produce a daughter stem cell and a daughter germ cell which will divide to form one or more gametes.","definition_xrefs":["GOC:dos"],"direct_ancestors":[{"relation_name":"is_a","term_name":"germ-line stem cell division","termid":"GO:0042078"},{"relation_name":"is_a","term_name":"asymmetric stem cell division","termid":"GO:0098722"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"germline stem cell asymmetric division","termid":"GO:0098728"}


id: PBO:0059986
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MT-ND4L pseudogene 6","termid":"PBO:0059986"}


id: PBO:0076648
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TBX3 antisense RNA 1","termid":"PBO:0076648"}


id: PBO:0067283
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 364, pseudogene","termid":"PBO:0067283"}


id: PBO:0062584
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 10 subfamily G member 8","termid":"PBO:0062584"}


id: PBO:0002367
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"conserved gene with no initiator methionine","termid":"PBO:0002367"}


id: GO:1903972
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of cellular response to macrophage colony-stimulating factor stimulus.","definition_xrefs":["GOC:TermGenie","PMID:19100238","GOC:nc","GO_REF:0000058","GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of cellular process","termid":"GO:0050794"},{"relation_name":"is_a","term_name":"regulation of response to macrophage colony-stimulating factor","termid":"GO:1903969"},{"relation_name":"regulates","term_name":"cellular response to macrophage colony-stimulating factor stimulus","termid":"GO:0036006"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of cellular response to macrophage colony-stimulating factor stimulus","synonyms":[{"name":"regulation of cellular response to M-CSF stimulus","type":"exact"},{"name":"regulation of cellular response to macrophage colony-stimulating factor","type":"exact"}],"termid":"GO:1903972"}


id: MOD:00240
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-lysine residue to 4-hydroxy-L-lysine.","definition_xrefs":["RESID:AA0235","PubMed:4005040","ChEBI:141495"],"direct_ancestors":[{"relation_name":"is_a","term_name":"monohydroxylated lysine","termid":"MOD:01047"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"4-hydroxy-L-lysine","synonyms":[{"name":"(2S,4R)-2,6-diamino-4-hydroxyhexanoic acid","type":"exact"},{"name":"4-hydroxy-L-lysine","type":"exact"},{"name":"4-hydroxylated L-lysine","type":"exact"},{"name":"4HyLys","type":"exact"},{"name":"L-threo-gamma-hydroxylysine","type":"exact"},{"name":"MOD_RES 4-hydroxylysine","type":"exact"},{"name":"alpha,epsilon-diamino-gamma-hydroxycaproic acid","type":"exact"}],"termid":"MOD:00240"}


id: PBO:0061730
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nuclear RNA export factor 3","termid":"PBO:0061730"}


id: PBO:0066591
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ras homolog family member F, filopodia associated","termid":"PBO:0066591"}


id: GO:0001062
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1). Utilizes a DNA template that contains a plastid PEP-A RNA polymerase II specific promoter to direct initiation and catalyses DNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time. Can initiate a chain 'de novo'.","definition_xrefs":["PMID:20701995","GOC:txnOH"],"gene_count":0,"genotype_count":0,"name":"obsolete plastid PEP-A RNA polymerase activity (obsolete GO:0001062)","termid":"GO:0001062"}


id: PBO:0057153
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 301a","termid":"PBO:0057153"}


id: GO:0043286
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of poly(3-hydroxyalkanoates), polyesters of 3-hydroxyacids produced as intracellular granules by a large variety of bacteria.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of biosynthetic process","termid":"GO:0009889"},{"relation_name":"regulates","term_name":"poly(3-hydroxyalkanoate) biosynthetic process","termid":"GO:0042621"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of poly(3-hydroxyalkanoate) biosynthetic process","synonyms":[{"name":"regulation of PHA","type":"exact"},{"name":"regulation of poly(3-hydroxyalkanoate) anabolism","type":"exact"},{"name":"regulation of poly(3-hydroxyalkanoate) biosynthesis","type":"exact"},{"name":"regulation of poly(3-hydroxyalkanoate) formation","type":"exact"},{"name":"regulation of poly(3-hydroxyalkanoate) synthesis","type":"exact"}],"termid":"GO:0043286"}


id: GO:0034553
data:
  {"annotated_genes":["SJAG_03574","SJAG_07005","SJAG_00703","SJAG_01895"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[84481,95415,103667,109306],"is_not":false,"summary":null,"term":"GO:0034553"}]},"cv_name":"biological_process","definition":"The aggregation, arrangement and bonding together of a set of components to form respiratory chain complex II, in the mitochondrial inner membrane.","definition_xrefs":["GOC:dgf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mitochondrial respiratory chain complex assembly","termid":"GO:0033108"},{"relation_name":"is_a","term_name":"respiratory chain complex II assembly","termid":"GO:0034552"}],"gene_count":4,"genes_by_uniquename":{"SJAG_00703":null,"SJAG_01895":null,"SJAG_03574":null,"SJAG_07005":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0044085"},{"rel_name":"is_a","termid":"GO:0065003"},{"rel_name":"part_of","termid":"GO:0007005"}],"interesting_parent_ids":["GO:0008150","GO:0065003","GO:0044085","GO:0007005"],"is_obsolete":false,"name":"mitochondrial respiratory chain complex II assembly","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0034553","terms_by_termid":{"GO:0034553":null}}


id: GO:0030130
data:
  {"annotated_genes":["SJAG_00379","SJAG_04609","SJAG_02282","SJAG_04565","SJAG_01809","SJAG_04517"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[91066,109084],"is_not":false,"summary":null,"term":"GO:0030130"},{"annotations":[109179,97291,108962,114997],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0030121"}]},"cv_name":"cellular_component","definition":"A clathrin coat found on a vesicle of the trans-Golgi network.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"clathrin vesicle coat","termid":"GO:0030125"},{"relation_name":"part_of","term_name":"Golgi apparatus","termid":"GO:0005794"},{"relation_name":"part_of","term_name":"trans-Golgi network transport vesicle membrane","termid":"GO:0012510"}],"gene_count":6,"genes_by_uniquename":{"SJAG_00379":null,"SJAG_01809":null,"SJAG_02282":null,"SJAG_04517":null,"SJAG_04565":null,"SJAG_04609":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005794"},{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"part_of","termid":"GO:0031410"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0031410","GO:0005794","GO:0032991","GO:0005575","GO:0005737"],"is_obsolete":false,"name":"clathrin coat of trans-Golgi network vesicle","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"clathrin coat of TGN vesicle","type":"exact"}],"termid":"GO:0030130","terms_by_termid":{"GO:0030121":null,"GO:0030130":null}}


id: GO:0002158
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The multiplication or reproduction of osteoclasts, resulting in the expansion of an osteoclast cell population. An osteoclast is a specialized phagocytic cell associated with the absorption and removal of the mineralized matrix of bone tissue, which typically differentiates from monocytes.","definition_xrefs":["GOC:hjd","CL:0000092"],"direct_ancestors":[{"relation_name":"is_a","term_name":"leukocyte proliferation","termid":"GO:0070661"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"osteoclast proliferation","termid":"GO:0002158"}


id: PBO:0041042
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"BRCA1/BRCA2-containing complex subunit 3","termid":"PBO:0041042"}


id: FYPO:0004034
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which the observed rate of glutathione transferase activity is decreased.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased catalytic activity","termid":"FYPO:0000663"},{"relation_name":"is_a","term_name":"abnormal glutathione transferase activity","termid":"FYPO:0003980"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0000654"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000661"},{"rel_name":"is_a","termid":"FYPO:0000707"}],"interesting_parent_ids":["FYPO:0000661","FYPO:0000652","FYPO:0001985","FYPO:0000654","FYPO:0000707"],"is_obsolete":false,"name":"decreased glutathione transferase activity","synonyms":[{"name":"reduced glutathione transferase activity","type":"exact"}],"termid":"FYPO:0004034"}


id: PBO:0067671
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 851, pseudogene","termid":"PBO:0067671"}


id: GO:1901250
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of lung goblet cell differentiation.","definition_xrefs":["GOC:TermGenie","GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of epithelial cell differentiation","termid":"GO:0030857"},{"relation_name":"is_a","term_name":"negative regulation of multicellular organismal process","termid":"GO:0051241"},{"relation_name":"is_a","term_name":"regulation of lung goblet cell differentiation","termid":"GO:1901249"},{"relation_name":"negatively_regulates","term_name":"lung goblet cell differentiation","termid":"GO:0060480"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of lung goblet cell differentiation","synonyms":[{"name":"down regulation of lung goblet cell differentiation","type":"exact"},{"name":"down regulation of pulmonary goblet cell differentiation","type":"exact"},{"name":"down-regulation of lung goblet cell differentiation","type":"exact"},{"name":"down-regulation of pulmonary goblet cell differentiation","type":"exact"},{"name":"downregulation of lung goblet cell differentiation","type":"exact"},{"name":"downregulation of pulmonary goblet cell differentiation","type":"exact"},{"name":"inhibition of lung goblet cell differentiation","type":"narrow"},{"name":"inhibition of pulmonary goblet cell differentiation","type":"narrow"},{"name":"negative regulation of pulmonary goblet cell differentiation","type":"exact"}],"termid":"GO:1901250"}


id: GO:0006771
data:
  {"annotated_genes":["SJAG_00480","SJAG_04711","SJAG_02491","SJAG_02360","SJAG_00376","SJAG_04845","SJAG_00491","SJAG_01054"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[83705,102955,111885,110940,106562,113311,103151,97311],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0009231"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways involving riboflavin (vitamin B2), the precursor for the coenzymes flavin mononucleotide (FMN) and flavin adenine dinucleotide (FAD).","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"water-soluble vitamin metabolic process","termid":"GO:0006767"},{"relation_name":"is_a","term_name":"flavin-containing compound metabolic process","termid":"GO:0042726"}],"gene_count":8,"genes_by_uniquename":{"SJAG_00376":null,"SJAG_00480":null,"SJAG_00491":null,"SJAG_01054":null,"SJAG_02360":null,"SJAG_02491":null,"SJAG_04711":null,"SJAG_04845":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0006766"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0044281","GO:0006766","GO:0008150"],"is_obsolete":false,"name":"riboflavin metabolic process","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["Wikipedia:Riboflavin"],"synonyms":[{"name":"riboflavin metabolism","type":"exact"},{"name":"vitamin B2 metabolic process","type":"exact"},{"name":"vitamin B2 metabolism","type":"exact"},{"name":"vitamin G metabolic process","type":"exact"},{"name":"vitamin G metabolism","type":"exact"}],"termid":"GO:0006771","terms_by_termid":{"GO:0009231":null}}


id: PBO:0026909
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_mitotic_sister_chromatid_arm_separation","termid":"PBO:0026909"}


id: GO:2000699
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The series of molecular signals generated as a consequence of a fibroblast growth factor receptor binding to one of its physiological ligands that contributes to the formation of the ureteric bud from the Wolffian duct.","definition_xrefs":["GOC:yaf","GOC:mtg_kidney_jan10"],"direct_ancestors":[{"relation_name":"is_a","term_name":"fibroblast growth factor receptor signaling pathway","termid":"GO:0008543"},{"relation_name":"part_of","term_name":"ureteric bud formation","termid":"GO:0060676"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"fibroblast growth factor receptor signaling pathway involved in ureteric bud formation","synonyms":[{"name":"FGF receptor signaling pathway of ureteric bud formation","type":"exact"},{"name":"FGF receptor signalling pathway of ureteric bud formation","type":"exact"},{"name":"FGFR signaling pathway of ureteric bud formation","type":"exact"},{"name":"fibroblast growth factor receptor signaling pathway of ureteric bud formation","type":"exact"},{"name":"fibroblast growth factor receptor signalling pathway of ureteric bud formation","type":"exact"}],"termid":"GO:2000699"}


id: GO:0005471
data:
  {"annotated_genes":["SJAG_02050"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[107081],"is_not":false,"summary":null,"term":"GO:0005471"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: ATP(out) + ADP(in) = ATP(in) + ADP(out).","definition_xrefs":["TC:2.A.29.1.1"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ATP transmembrane transporter activity","termid":"GO:0005347"},{"relation_name":"is_a","term_name":"ADP transmembrane transporter activity","termid":"GO:0015217"},{"relation_name":"is_a","term_name":"antiporter activity","termid":"GO:0015297"}],"gene_count":1,"genes_by_uniquename":{"SJAG_02050":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0022857"}],"interesting_parent_ids":["GO:0003674","GO:0022857","GO:0005215"],"is_obsolete":false,"name":"ATP:ADP antiporter activity","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["GO:0005349","RHEA:34999"],"synonyms":[{"name":"ADP/ATP carrier protein","type":"exact"},{"name":"ADP/ATP translocase","type":"exact"},{"name":"ATP/ADP exchange","type":"exact"},{"name":"ATP/ADP exchanger","type":"exact"},{"name":"adenine nucleotide translocase","type":"exact"}],"termid":"GO:0005471","terms_by_termid":{"GO:0005471":null}}


id: GO:0120067
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process in which force is generated within gastric smooth muscle tissue, resulting in a change in muscle geometry. This process occurs in the narrowest part of the pylorus that separates the stomach from the duodenum.","definition_xrefs":["GOC:sl","PMID:15890336"],"direct_ancestors":[{"relation_name":"is_a","term_name":"stomach pylorus smooth muscle contraction","termid":"GO:0120064"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"pyloric sphincter smooth muscle contraction","termid":"GO:0120067"}


id: FYPO:0002385
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to heterochromatin is decreased.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal protein localization to heterochromatin during vegetative growth","termid":"FYPO:0001131"},{"relation_name":"is_a","term_name":"decreased protein localization to chromatin during vegetative growth","termid":"FYPO:0002909"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000138"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0000138","FYPO:0001320","FYPO:0005447","FYPO:0001985"],"is_obsolete":false,"name":"decreased protein localization to heterochromatin during vegetative growth","synonyms":[{"name":"decreased protein localisation to heterochromatin during vegetative growth","type":"exact"},{"name":"decreased protein localization to heterochromatin during mitotic cell cycle","type":"related"},{"name":"reduced protein localization to heterochromatin during vegetative growth","type":"exact"}],"termid":"FYPO:0002385"}


id: PBO:0029894
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_growth_on_terbinafine","termid":"PBO:0029894"}


id: GO:0034562
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 2,2-bis(4-hydroxyphenyl)-1-propanol + NADH + H+ + O2 = 2,3-bis(4-hydroxyphenyl)-1,2-propanediol + NAD+ + H2O.","definition_xrefs":["UM-BBD_reactionID:r0864"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen","termid":"GO:0016705"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016491","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"2,2-bis(4-hydroxyphenyl)-1-propanol hydroxylase activity","termid":"GO:0034562"}


id: GO:0060848
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process involved in cell fate commitment of an endothelial cell. Once determination has taken place, a cell becomes committed to differentiate down a particular pathway regardless of its environment.","definition_xrefs":["GOC:tb","GOC:sdb_2009","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell fate determination","termid":"GO:0001709"},{"relation_name":"part_of","term_name":"endothelial cell fate commitment","termid":"GO:0060839"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"endothelial cell fate determination","termid":"GO:0060848"}


id: GO:0090205
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that increases the rate, frequency, or extent of cholesterol metabolism, the chemical reactions and pathways involving cholesterol, cholest-5-en-3 beta-ol, the principal sterol of vertebrates and the precursor of many steroids, including bile acids and steroid hormones.","definition_xrefs":["GOC:sl","GOC:dph","GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of steroid metabolic process","termid":"GO:0045940"},{"relation_name":"is_a","term_name":"positive regulation of small molecule metabolic process","termid":"GO:0062013"},{"relation_name":"is_a","term_name":"regulation of cholesterol metabolic process","termid":"GO:0090181"},{"relation_name":"positively_regulates","term_name":"cholesterol metabolic process","termid":"GO:0008203"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"positively_regulates","termid":"GO:0044281"},{"rel_name":"regulates","termid":"GO:0006629"},{"rel_name":"regulates","termid":"GO:0044281"},{"rel_name":"positively_regulates","termid":"GO:0006629"}],"interesting_parent_ids":["GO:0008150","GO:0006629","GO:0044281"],"is_obsolete":false,"name":"positive regulation of cholesterol metabolic process","termid":"GO:0090205"}


id: PBO:0042163
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"C-C motif chemokine ligand 24","termid":"PBO:0042163"}


id: GO:0008230
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A heterodimeric complex containing the products of the insect genes Ecdysone receptor (EcR) and ultraspiracle (usp). Binding of ecdysone promotes association between the two subunits, and the receptor complex then initiates molting and metamorphosis by binding DNA and regulating the transcription of target genes.","definition_xrefs":["GOC:bf","PMID:14592980"],"direct_ancestors":[{"relation_name":"is_a","term_name":"RNA polymerase II transcription regulator complex","termid":"GO:0090575"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0005634"}],"interesting_parent_ids":["GO:0005634","GO:0005575","GO:0032991"],"is_obsolete":false,"name":"ecdysone receptor holocomplex","termid":"GO:0008230"}


id: PBO:0075047
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nucleolar RNA, C/D box 116-10","termid":"PBO:0075047"}


id: GO:2000408
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of T cell extravasation.","definition_xrefs":["GOC:mah","GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of cellular extravasation","termid":"GO:0002692"},{"relation_name":"is_a","term_name":"negative regulation of T cell migration","termid":"GO:2000405"},{"relation_name":"is_a","term_name":"regulation of T cell extravasation","termid":"GO:2000407"},{"relation_name":"negatively_regulates","term_name":"T cell extravasation","termid":"GO:0072683"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of T cell extravasation","synonyms":[{"name":"negative regulation of T lymphocyte extravasation","type":"exact"},{"name":"negative regulation of T-cell extravasation","type":"exact"},{"name":"negative regulation of T-lymphocyte extravasation","type":"exact"}],"termid":"GO:2000408"}


id: PBO:0087003
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Rho GTPase activating protein (RhoGAP); contains RhoGAP activity specific for both Rho1p and Cdc42p, and potentially Rho4p; acts with the RhoGAP Bem3p to negatively regulate Cdc42p-dependent signal transduction; involved in the control of cytoskeleton organization and cellular morphogenesis; required for bud emergence and for the morphogenesis checkpoint in response to actin depolymerization; localizes to sites of polarized growth and the plasma membrane","termid":"PBO:0087003"}


id: PBO:0089432
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SNARE Bet1","termid":"PBO:0089432"}


id: FYPO:0001284
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of phosphatidylserine measured in a cell is too low to detect.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"substance absent from cell during vegetative growth","termid":"FYPO:0001208"},{"relation_name":"is_a","term_name":"decreased phospholipid level","termid":"FYPO:0001289"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0001985","FYPO:0000002"],"is_obsolete":false,"name":"phosphatidylserine absent from cell","synonyms":[{"name":"PS absent from cell","type":"exact"},{"name":"phosphatidyl-L-serine absent from cell","type":"exact"},{"name":"phosphatidylserine absent from cell during mitotic cell cycle","type":"related"},{"name":"phosphatidylserine absent from cell during vegetative growth","type":"exact"}],"termid":"FYPO:0001284"}


id: FYPO:0003357
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A phenotype observed in the vegetative growth phase of the life cycle in which cells show increased sensitivity to filipin. Cells stop growing (and may die) at a concentration of filipin that allows wild type cells to grow.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased sensitivity to chemical during vegetative growth","termid":"FYPO:0000127"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000003"},{"rel_name":"is_a","termid":"FYPO:0002683"},{"rel_name":"is_a","termid":"FYPO:0000139"}],"interesting_parent_ids":["FYPO:0000139","FYPO:0001985","FYPO:0005447","FYPO:0000003","FYPO:0002683"],"is_obsolete":false,"name":"sensitive to filipin","synonyms":[{"name":"hypersensitive to filipin","type":"exact"},{"name":"sensitive to filipin during mitotic cell cycle","type":"related"},{"name":"sensitive to filipin during vegetative growth","type":"exact"},{"name":"sensitivity to chemicals interfering with lipids","type":"broad"}],"termid":"FYPO:0003357"}


id: FYPO:0000211
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"OBSOLETE. A chemical response phenotype observed in the vegetative growth phase of the life cycle in which the cellular response to a chemical is abnormal.","definition_xrefs":["PomBase:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete abnormal cellular response to drug (obsolete FYPO:0000211)","synonyms":[{"name":"abnormal cellular response to drug during vegetative growth","type":"exact"}],"termid":"FYPO:0000211"}


id: PBO:0051263
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"immunoglobulin heavy variable (III)-76-1 (pseudogene)","termid":"PBO:0051263"}


id: GO:0047635
data:
  {"annotated_genes":["SJAG_04145"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[107414],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004021"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: L-alanine + a 2-oxo acid = pyruvate + an L-amino acid.","definition_xrefs":["EC:2.6.1.12","MetaCyc:ALANINE--OXO-ACID-AMINOTRANSFERASE-RXN"],"direct_ancestors":[{"relation_name":"is_a","term_name":"transaminase activity","termid":"GO:0008483"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04145":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016769"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016740"}],"interesting_parent_ids":["GO:0003674","GO:0016740","GO:0016769","GO:0003824"],"is_obsolete":false,"name":"alanine-oxo-acid transaminase activity","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["RHEA:19953"],"synonyms":[{"name":"L-alanine-alpha-keto acid aminotransferase activity","type":"related"},{"name":"L-alanine:2-oxo-acid aminotransferase activity","type":"related"},{"name":"alanine--oxo-acid aminotransferase activity","type":"related"},{"name":"alanine-keto acid aminotransferase activity","type":"related"},{"name":"alanine-oxo acid aminotransferase activity","type":"related"},{"name":"alanine-oxo-acid aminotransferase activity","type":"exact"},{"name":"leucine-alanine transaminase activity","type":"related"}],"termid":"GO:0047635","terms_by_termid":{"GO:0004021":null}}


id: PBO:0040455
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ATP11B divergent transcript","termid":"PBO:0040455"}


id: PBO:0109144
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"armadillo-type fold protein, DUF1941 family protein Asi1","termid":"PBO:0109144"}


id: GO:0060303
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that modulates the number of nucleosomes in a given region of a chromosome.","definition_xrefs":["GOC:tb","GOC:dph"],"gene_count":0,"genotype_count":0,"name":"obsolete regulation of nucleosome density (obsolete GO:0060303)","termid":"GO:0060303"}


id: GO:0036520
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Cell-cell signaling that mediates the transfer of information from an astrocyte to a dopaminergic neuron.","definition_xrefs":["PMID:12794311","GOC:bf","GOC:PARL","PMID:21752258"],"direct_ancestors":[{"relation_name":"is_a","term_name":"glial cell-neuron signaling","termid":"GO:0150098"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"astrocyte-dopaminergic neuron signaling","synonyms":[{"name":"astrocyte-dopaminergic neuron cell signaling","type":"exact"},{"name":"dopaminergic neuron-astrocyte crosstalk","type":"related"},{"name":"mesencephalic dopaminergic neuron-astrocyte crosstalk","type":"narrow"},{"name":"midbrain dopaminergic neuron-astrocyte crosstalk","type":"narrow"}],"termid":"GO:0036520"}


id: PBO:0001991
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nucleolar RNA snR91","termid":"PBO:0001991"}


id: PBO:0087983
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA methyltransferase; methylates the N-1 position of guanine at position 9 in tRNAs; protein abundance increases in response to DNA replication stress; member of the SPOUT (SpoU-TrmD) methyltransferase family; human ortholog TRMT10A plays a role in the pathogenesis of microcephaly and early onset diabetes; an 18-mer originates from the TRM10 locus; genetic analysis shows the 18-mer is the translation regulator","termid":"PBO:0087983"}


id: PBO:0058545
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 6124","termid":"PBO:0058545"}


id: GO:0001724
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"OBSOLETE. Proteins that associate with the ends of intermediate filaments and couple the intermediate filaments to the plasma membrane.","definition_xrefs":["PMID:9484600","GOC:ajp"],"gene_count":0,"genotype_count":0,"name":"obsolete type III intermediate filament associated protein (obsolete GO:0001724)","synonyms":[{"name":"type III intermediate filament associated protein","type":"exact"}],"termid":"GO:0001724"}


id: PBO:0053093
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"late cornified envelope 3A","termid":"PBO:0053093"}


id: GO:0016519
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Combining with gastric inhibitory peptide (GIP) and transmitting the signal across the membrane to activate an associated G-protein.","definition_xrefs":["PMID:8243312","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"G protein-coupled receptor activity","termid":"GO:0004930"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0038023"}],"interesting_parent_ids":["GO:0003674","GO:0038023"],"is_obsolete":false,"name":"gastric inhibitory peptide receptor activity","synonyms":[{"name":"GIP receptor activity","type":"exact"},{"name":"glucose-dependent insulinotropic polypeptide receptor activity","type":"exact"}],"termid":"GO:0016519"}


id: PBO:0031114
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_phenotype_during_exponential_phase","termid":"PBO:0031114"}


id: PBO:0069942
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 1235, pseudogene","termid":"PBO:0069942"}


id: PBO:0001689
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TRAPP complex subunit Bet3 (predicted)","termid":"PBO:0001689"}


id: PBO:0111518
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cornichon family member 1","termid":"PBO:0111518"}


id: GO:0019469
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of octopine (N-(1-carboxy-4-guanidinobutyl)-L-alanine), an amino acid derived opine.","definition_xrefs":["GOC:jl","ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"D-amino acid catabolic process","termid":"GO:0019478"},{"relation_name":"is_a","term_name":"cellular modified amino acid catabolic process","termid":"GO:0042219"},{"relation_name":"is_a","term_name":"octopine metabolic process","termid":"GO:0046419"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006520"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0044248"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0044281","GO:0044248","GO:0006520","GO:0008150"],"is_obsolete":false,"name":"octopine catabolic process","secondary_identifiers":["MetaCyc:OCTOPINEDEG-PWY"],"synonyms":[{"name":"octopine breakdown","type":"exact"},{"name":"octopine catabolism","type":"exact"},{"name":"octopine degradation","type":"exact"}],"termid":"GO:0019469"}


id: FYECO:0000357
data:
  {"annotation_feature_type":"gene","cv_name":"fission_yeast_phenotype_condition","definition":"An experimental condition in which aspartic acid was added to the medium or assay buffer in excess compared to standard medium or assay buffers.","definition_xrefs":["PomBase:al"],"direct_ancestors":[{"relation_name":"is_a","term_name":"grouping excess","termid":"FYECO:0000109"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"+ aspartate","synonyms":[{"name":"+ Asp","type":"exact"}],"termid":"FYECO:0000357"}


id: GO:0052862
data:
  {"annotated_genes":["SJAG_01017","SJAG_00667"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[90212,96312],"is_not":false,"summary":null,"term":"GO:0052862"}]},"cv_name":"molecular_function","definition":"Catalysis of the endohydrolysis of (1->4)-linkages in beta-D-glucans when the glucose residue whose reducing group is involved in the linkage to be hydrolysed is itself substituted at C-3.","definition_xrefs":["EC:3.2.1.6"],"direct_ancestors":[{"relation_name":"is_a","term_name":"beta-glucanase activity","termid":"GO:0052736"}],"gene_count":2,"genes_by_uniquename":{"SJAG_00667":null,"SJAG_01017":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0016798"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016787","GO:0003824","GO:0003674","GO:0016798"],"is_obsolete":false,"name":"glucan endo-1,4-beta-glucanase activity, C-3 substituted reducing group","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["MetaCyc:3.2.1.6-RXN"],"synonyms":[{"name":"1,3-(1,4)-beta-D-glucan 4-glucanohydrolase activity","type":"related"},{"name":"laminaranase activity","type":"related"},{"name":"laminarinase activity","type":"related"}],"termid":"GO:0052862","terms_by_termid":{"GO:0052862":null}}


id: PBO:0078732
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-Met (anticodon CAT) 5-1","termid":"PBO:0078732"}


id: GO:0004190
data:
  {"annotated_genes":["SJAG_03763","SJAG_00254","SJAG_01968","SJAG_00109","SJAG_04583","SJAG_03420","SJAG_00784","SJAG_02260"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[59744,78880,91030,91031,91032,94581,111757],"is_not":false,"summary":null,"term":"GO:0004190"},{"annotations":[90897],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0042500"}]},"cv_name":"molecular_function","definition":"Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which a water molecule bound by the side chains of aspartic residues at the active center acts as a nucleophile.","definition_xrefs":["ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"endopeptidase activity","termid":"GO:0004175"},{"relation_name":"is_a","term_name":"aspartic-type peptidase activity","termid":"GO:0070001"}],"gene_count":8,"genes_by_uniquename":{"SJAG_00109":null,"SJAG_00254":null,"SJAG_00784":null,"SJAG_01968":null,"SJAG_02260":null,"SJAG_03420":null,"SJAG_03763":null,"SJAG_04583":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0008233"},{"rel_name":"is_a","termid":"GO:0140096"}],"interesting_parent_ids":["GO:0016787","GO:0003674","GO:0003824","GO:0008233","GO:0140096"],"is_obsolete":false,"name":"aspartic-type endopeptidase activity","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000033":null,"GO_REF:0000107":null},"secondary_identifiers":["Reactome:R-HSA-9013361","EC:3.4.23.-","Reactome:R-HSA-373705","Reactome:R-HSA-2022403","Reactome:R-HSA-9604294","Reactome:R-HSA-157353","Reactome:R-HSA-2065357","Reactome:R-HSA-2022412","Reactome:R-HSA-2220988","Reactome:R-HSA-9017817","Reactome:R-HSA-157640"],"synonyms":[{"name":"aspartate protease activity","type":"narrow"},{"name":"aspartic endopeptidase activity","type":"exact"},{"name":"aspartic protease activity","type":"narrow"},{"name":"aspartyl protease activity","type":"narrow"},{"name":"carboxyl protease activity","type":"narrow"}],"termid":"GO:0004190","terms_by_termid":{"GO:0004190":null,"GO:0042500":null}}


id: PBO:0030474
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_vacuolar_glutamate_level","termid":"PBO:0030474"}


id: FYPO:0005388
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the number of sites at which the protein Rad51 accumulates is lower than normal during a cellular response to ionizing radiation.","definition_xrefs":["PomBase:mah","PMID:12023299"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal cellular physical quality phenotype during vegetative growth","termid":"FYPO:0004639"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0000002","FYPO:0001985"],"is_obsolete":false,"name":"decreased number of Rad51 foci during cellular response to ionizing radiation","synonyms":[{"name":"decreased number of Rad51 foci during cellular response to IR","type":"exact"},{"name":"decreased number of Rad51 foci during cellular response to ionizing radiation during mitotic cell cycle","type":"related"},{"name":"decreased number of Rad51 foci during cellular response to ionizing radiation during vegetative growth","type":"exact"},{"name":"reduced number of Rad51 foci during cellular response to ionizing radiation","type":"exact"}],"termid":"FYPO:0005388"}


id: PBO:0087730
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Subunit of the SF3a splicing factor complex; required for spliceosome assembly; acts after the formation of the U1 snRNP-pre-mRNA complex","termid":"PBO:0087730"}


id: GO:0033634
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate, or extent of cell-cell adhesion mediated by integrin.","definition_xrefs":["GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of cell-cell adhesion","termid":"GO:0022409"},{"relation_name":"is_a","term_name":"positive regulation of cell adhesion mediated by integrin","termid":"GO:0033630"},{"relation_name":"is_a","term_name":"regulation of cell-cell adhesion mediated by integrin","termid":"GO:0033632"},{"relation_name":"positively_regulates","term_name":"cell-cell adhesion mediated by integrin","termid":"GO:0033631"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"positively_regulates","termid":"GO:0007155"},{"rel_name":"regulates","termid":"GO:0007155"}],"interesting_parent_ids":["GO:0007155","GO:0008150"],"is_obsolete":false,"name":"positive regulation of cell-cell adhesion mediated by integrin","synonyms":[{"name":"positive regulation of cell-cell adhesion mediated by integrin complex","type":"exact"}],"termid":"GO:0033634"}


id: PBO:0090051
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"40S ribosomal protein S12","termid":"PBO:0090051"}


id: PBO:0080025
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ubiquitin specific peptidase 17 like family member 11","termid":"PBO:0080025"}


id: PBO:0004271
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"vacuolar sorting protein Vps33","termid":"PBO:0004271"}


id: GO:0046885
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of hormones.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of cellular biosynthetic process","termid":"GO:0031326"},{"relation_name":"is_a","term_name":"regulation of hormone metabolic process","termid":"GO:0032350"},{"relation_name":"regulates","term_name":"hormone biosynthetic process","termid":"GO:0042446"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of hormone biosynthetic process","synonyms":[{"name":"regulation of hormone anabolism","type":"exact"},{"name":"regulation of hormone biosynthesis","type":"exact"},{"name":"regulation of hormone formation","type":"exact"},{"name":"regulation of hormone synthesis","type":"exact"}],"termid":"GO:0046885"}


id: PBO:0000483
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sec14 cytosolic factor family Sec14","termid":"PBO:0000483"}


id: PBO:0068094
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 5S ribosomal pseudogene 401","termid":"PBO:0068094"}


id: GO:0035150
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Ensuring that a tube is of the correct length and diameter. Tube size must be maintained not only during tube formation, but also throughout development and in some physiological processes.","definition_xrefs":["PMID:10887083"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of anatomical structure size","termid":"GO:0090066"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of tube size","termid":"GO:0035150"}


id: GO:0002476
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which an antigen-presenting cell expresses a peptide antigen of endogenous origin on its cell surface in association with an MHC class Ib protein complex. The peptide is typically a fragment of a larger endogenous protein which has been degraded within the cell. Class Ib here refers to non-classical class I molecules, such as those of the HLA-E gene family.","definition_xrefs":["GOC:add","PMID:15928678"],"direct_ancestors":[{"relation_name":"is_a","term_name":"antigen processing and presentation of peptide antigen via MHC class Ib","termid":"GO:0002428"},{"relation_name":"is_a","term_name":"antigen processing and presentation of endogenous peptide antigen","termid":"GO:0002483"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"antigen processing and presentation of endogenous peptide antigen via MHC class Ib","synonyms":[{"name":"endogenous peptide antigen processing and presentation via MHC class Ib","type":"exact"}],"termid":"GO:0002476"}


id: GO:0010964
data:
  {"annotated_genes":["SJAG_04369","SJAG_03664"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[113884],"is_not":false,"summary":null,"term":"GO:0010964"},{"annotations":[104672],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0060906"}]},"cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of small non-coding RNA-mediated heterochromatin formation.","definition_xrefs":["GOC:dph","GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of heterochromatin formation","termid":"GO:0031445"},{"relation_name":"is_a","term_name":"regulation of gene silencing by regulatory ncRNA","termid":"GO:0060966"},{"relation_name":"regulates","term_name":"regulatory ncRNA-mediated heterochromatin formation","termid":"GO:0031048"}],"gene_count":2,"genes_by_uniquename":{"SJAG_03664":null,"SJAG_04369":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0006325"},{"rel_name":"regulates","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0006325","GO:0010467","GO:0008150"],"is_obsolete":false,"name":"regulation of regulatory ncRNA-mediated heterochromatin formation","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"regulation of RNAi-mediated heterochromatin assembly","type":"exact"},{"name":"regulation of chromatin silencing by small RNA","type":"narrow"},{"name":"regulation of heterochromatin assembly by small RNA","type":"narrow"},{"name":"regulation of ncRNA-mediated heterochromatin formation","type":"exact"},{"name":"regulation of small non-coding RNA-mediated heterochromatin formation","type":"narrow"}],"termid":"GO:0010964","terms_by_termid":{"GO:0010964":null,"GO:0060906":null}}


id: PR:Q9USY4
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- abp2 gene.","definition_xrefs":["UniProtKB:Q9USY4","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ARS-binding protein 2 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC1861.02","synonyms":[{"name":"Spom972h-abp2","type":"exact"}],"termid":"PR:Q9USY4"}


id: PBO:0043018
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CHL1 antisense RNA 2","termid":"PBO:0043018"}


id: PBO:0027167
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_negative_regulation_of_premeiotic_DNA_replication_initiation","termid":"PBO:0027167"}


id: PBO:0072620
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"radial spoke head component 4A","termid":"PBO:0072620"}


id: PR:Q10236
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A ribonuclease H2 subunit A that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx","PANTHER:PTHR10954:SF7","OMA:SCHPO00931"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribonuclease H2 subunit A (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC4G9.02","secondary_identifiers":["UniProtKB:Q10236"],"synonyms":[{"name":"RNase H2 subunit A (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"RNase HI large subunit (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-RNASEH2A","type":"exact"},{"name":"ribonuclease HI large subunit (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"ribonuclease HI subunit A (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:Q10236"}


id: PBO:0017422
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-location_of","termid":"PBO:0017422"}


id: GO:0051460
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of the regulated release of corticotropic hormone from a cell.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of multicellular organismal process","termid":"GO:0051241"},{"relation_name":"is_a","term_name":"regulation of corticotropin secretion","termid":"GO:0051459"},{"relation_name":"is_a","term_name":"negative regulation of peptide hormone secretion","termid":"GO:0090278"},{"relation_name":"negatively_regulates","term_name":"corticotropin secretion","termid":"GO:0051458"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"negatively_regulates","termid":"GO:0006810"},{"rel_name":"negatively_regulates","termid":"GO:0023052"},{"rel_name":"regulates","termid":"GO:0023052"},{"rel_name":"regulates","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0008150","GO:0023052","GO:0006810"],"is_obsolete":false,"name":"negative regulation of corticotropin secretion","synonyms":[{"name":"down regulation of adrenocorticotropin secretion","type":"exact"},{"name":"down-regulation of adrenocorticotropin secretion","type":"exact"},{"name":"downregulation of adrenocorticotropin secretion","type":"exact"},{"name":"inhibition of adrenocorticotropin secretion","type":"narrow"},{"name":"negative regulation of ACTH secretion","type":"exact"},{"name":"negative regulation of adrenocorticotropic hormone secretion","type":"exact"},{"name":"negative regulation of adrenocorticotropin secretion","type":"exact"},{"name":"negative regulation of adrenotropic hormone secretion","type":"exact"},{"name":"negative regulation of adrenotropin secretion","type":"exact"},{"name":"negative regulation of corticotropic hormone secretion","type":"exact"}],"termid":"GO:0051460"}


id: PBO:0051610
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"interleukin 34","termid":"PBO:0051610"}


id: GO:0051470
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The directed movement of ectoine across a membrane by means of some agent such as a transporter or a pore. Ectoine (1,4,5,6-tetrahydro-2-methyl-4-pyrimidinecarboxylic acid) is a tetrahydropyrimidine commonly synthesized by halophilic bacteria.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"monocarboxylic acid transport","termid":"GO:0015718"},{"relation_name":"is_a","term_name":"nitrogen compound transport","termid":"GO:0071705"},{"relation_name":"is_a","term_name":"carboxylic acid transmembrane transport","termid":"GO:1905039"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0055085"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0006810","GO:0051179","GO:0055085"],"is_obsolete":false,"name":"ectoine transmembrane transport","synonyms":[{"name":"ectoine transport","type":"related"}],"termid":"GO:0051470"}


id: PBO:0059545
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrially encoded tRNA-Leu (CUN) 2","termid":"PBO:0059545"}


id: PBO:0070181
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U7 small nuclear 96 pseudogene","termid":"PBO:0070181"}


id: PATO:0001507
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A quality of a single process inhering in a bearer by virtue of the bearer's being interrupted of its normal course.","definition_xrefs":["PATOC:GVG"],"direct_ancestors":[{"relation_name":"is_a","term_name":"occurrence","termid":"PATO:0000057"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"disrupted","termid":"PATO:0001507"}


id: GO:1902884
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of response to oxidative stress.","definition_xrefs":["GOC:TermGenie","GOC:kmv","GO_REF:0000058","PMID:16899554"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of response to stimulus","termid":"GO:0048584"},{"relation_name":"is_a","term_name":"regulation of response to oxidative stress","termid":"GO:1902882"},{"relation_name":"positively_regulates","term_name":"response to oxidative stress","termid":"GO:0006979"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of response to oxidative stress","synonyms":[{"name":"activation of response to oxidative stress","type":"narrow"},{"name":"up regulation of response to oxidative stress","type":"exact"},{"name":"up-regulation of response to oxidative stress","type":"exact"},{"name":"upregulation of response to oxidative stress","type":"exact"}],"termid":"GO:1902884"}


id: GO:0008616
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of queuosines, a series of nucleosides found in tRNA and having an additional pentenyl ring added via an NH group to the methyl group of 7-methylguanosine. The pentenyl ring may carry other substituents.","definition_xrefs":["GOC:go_curators","ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ribonucleoside biosynthetic process","termid":"GO:0042455"},{"relation_name":"is_a","term_name":"queuosine metabolic process","termid":"GO:0046116"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0055086"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0008150","GO:0055086","GO:0044281"],"is_obsolete":false,"name":"queuosine biosynthetic process","synonyms":[{"name":"queuosine anabolism","type":"exact"},{"name":"queuosine biosynthesis","type":"exact"},{"name":"queuosine formation","type":"exact"},{"name":"queuosine synthesis","type":"exact"}],"termid":"GO:0008616"}


id: PBO:0080530
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"WASH complex subunit 2C","termid":"PBO:0080530"}


id: PBO:0028957
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-inviable_microcolony,_swollen_elongated_septated_cells_(obsolete_FYPO:0002844)","termid":"PBO:0028957"}


id: PR:Q12701
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A STE20/SPS1-related proline-alanine-rich protein kinase that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO04944","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"serine/threonine-protein kinase ksg1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC576.15c","secondary_identifiers":["UniProtKB:Q12701"],"synonyms":[{"name":"Spom972h-STK39","type":"exact"}],"termid":"PR:Q12701"}


id: PBO:0001378
data:
  {"annotation_feature_type":"gene","cv_name":"disease_associated","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Lesch-Nyhan syndrome and Kelley-Seegmiller syndrome","termid":"PBO:0001378"}


id: GO:0010709
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The formation of a stable duplex DNA that contains one strand from each of the two recombining DNA molecules resulting in the error-free repair of a double-strand break without the exchange of adjacent sequences.","definition_xrefs":["GOC:tb","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"heteroduplex formation","termid":"GO:0030491"},{"relation_name":"part_of","term_name":"double-strand break repair via synthesis-dependent strand annealing","termid":"GO:0045003"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0006310"},{"rel_name":"part_of","termid":"GO:0006259"},{"rel_name":"part_of","termid":"GO:0006281"},{"rel_name":"is_a","termid":"GO:0006259"}],"interesting_parent_ids":["GO:0006281","GO:0006310","GO:0006259","GO:0008150"],"is_obsolete":false,"name":"heteroduplex formation involved in double-strand break repair via synthesis-dependent strand annealing","termid":"GO:0010709"}


id: GO:2000226
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of pancreatic A cell differentiation.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of epithelial cell differentiation","termid":"GO:0030856"},{"relation_name":"regulates","term_name":"pancreatic A cell differentiation","termid":"GO:0003310"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of pancreatic A cell differentiation","synonyms":[{"name":"regulation of pancreatic alpha cell differentiation","type":"exact"}],"termid":"GO:2000226"}


id: PBO:0073025
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"serine carboxypeptidase 1","termid":"PBO:0073025"}


id: PBO:0053851
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1120","termid":"PBO:0053851"}


id: MOD:01449
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-3-oxoalanine residue to L-3,3-dihydroxyoalanine.","definition_xrefs":["PubMed:18688235","PubMed:17558559","PubMed:11435113"],"direct_ancestors":[{"relation_name":"derives_from","term_name":"L-3-oxoalanine","termid":"MOD:01169"},{"relation_name":"is_a","term_name":"L-3,3-dihydroxyoalanine","termid":"MOD:01448"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"L-3,3-dihydroxyoalanine (Oxoalanine)","termid":"MOD:01449"}


id: GO:0002718
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate, or extent of cytokine production that contributes to an immune response.","definition_xrefs":["GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of cytokine production","termid":"GO:0001817"},{"relation_name":"is_a","term_name":"regulation of production of molecular mediator of immune response","termid":"GO:0002700"},{"relation_name":"regulates","term_name":"cytokine production involved in immune response","termid":"GO:0002367"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0010467","GO:0008150"],"is_obsolete":false,"name":"regulation of cytokine production involved in immune response","secondary_identifiers":["GO:0002739","GO:0002742"],"synonyms":[{"name":"regulation of cytokine biosynthetic process involved in immune response","type":"narrow"},{"name":"regulation of cytokine production during immune response","type":"related"},{"name":"regulation of cytokine secretion involved in immune response","type":"narrow"}],"termid":"GO:0002718"}


id: PBO:0042004
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"coiled-coil domain containing 59","termid":"PBO:0042004"}


id: MOD:00245
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively crosslinks a glycine residue and an L-serine residue to form glycine oxazole-4-carboxylic acid.","definition_xrefs":["PubMed:8183941","PubMed:8895467","RESID:AA0240"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxazole/oxazoline ring crosslinked residues (Ser)","termid":"MOD:01421"},{"relation_name":"is_a","term_name":"didehydrogenated residue","termid":"MOD:01888"},{"relation_name":"is_a","term_name":"crosslinked glycine residue","termid":"MOD:02047"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glycine oxazole-4-carboxylic acid","synonyms":[{"name":"2-aminomethyl-1,3-oxazole-4-carboxylic acid","type":"exact"},{"name":"2-azanylmethyl-1,3-oxazole-4-carboxylic acid","type":"exact"},{"name":"CROSSLNK Oxazole-4-carboxylic acid (Gly-Ser)","type":"exact"},{"name":"glycine oxazole-4-carboxylic acid","type":"exact"}],"termid":"MOD:00245"}


id: PBO:0066531
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RANBP2 like and GRIP domain containing 6","termid":"PBO:0066531"}


id: _global:results_in_disappearance_of
data:
  {"annotation_feature_type":"gene","cv_name":"relationship","direct_ancestors":[{"relation_name":"is_a","term_name":"results_in_ending_of","termid":"RO:0002552"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"results_in_disappearance_of","termid":"_global:results_in_disappearance_of"}


id: GO:0101018
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of firing from a late origin of replication involved in mitotic DNA replication.","definition_xrefs":["PMID:26436827"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of mitotic DNA replication initiation from late origin","termid":"GO:0101017"},{"relation_name":"is_a","term_name":"negative regulation of mitotic DNA replication initiation","termid":"GO:1903467"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"negatively_regulates","termid":"GO:0006260"},{"rel_name":"regulates","termid":"GO:0006259"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0007049"},{"rel_name":"regulates","termid":"GO:0006260"},{"rel_name":"negatively_regulates","termid":"GO:0006259"},{"rel_name":"negatively_regulates","termid":"GO:0007049"}],"interesting_parent_ids":["GO:0006259","GO:0008150","GO:0007049","GO:0006260"],"is_obsolete":false,"name":"negative regulation of mitotic DNA replication initiation from late origin","synonyms":[{"name":"negative regulation of late replication origin firing","type":"exact"}],"termid":"GO:0101018"}


id: PBO:0110327
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ANAPC13 pseudogene 1","termid":"PBO:0110327"}


id: GO:0019310
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of inositol, 1,2,3,4,5,6-cyclohexanehexol, a growth factor for animals and microorganisms.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"inositol metabolic process","termid":"GO:0006020"},{"relation_name":"is_a","term_name":"polyol catabolic process","termid":"GO:0046174"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0044281"],"is_obsolete":false,"name":"inositol catabolic process","secondary_identifiers":["MetaCyc:P562-PWY"],"synonyms":[{"name":"inositol breakdown","type":"exact"},{"name":"inositol catabolism","type":"exact"},{"name":"inositol degradation","type":"exact"},{"name":"myo-inositol catabolic process","type":"narrow"},{"name":"myo-inositol catabolism","type":"narrow"},{"name":"vitamin Bh catabolic process","type":"exact"},{"name":"vitamin Bh catabolism","type":"exact"}],"termid":"GO:0019310"}


id: MOD:01209
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-aspartic acid residue to the copper(1+) aspartate salt.","definition_xrefs":["Unimod:531#D"],"direct_ancestors":[{"relation_name":"is_a","term_name":"copper containing modified residue","termid":"MOD:00742"},{"relation_name":"is_a","term_name":"metal or metal cluster coordinated L-aspartic acid residue","termid":"MOD:02066"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"copper(1+) L-aspartate","synonyms":[{"name":"Cation:Cu[I]","type":"related"},{"name":"Replacement of proton by copper","type":"related"},{"name":"cuprous salt","type":"exact"}],"termid":"MOD:01209"}


id: GO:0048258
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: NADP+ + 3-dehydro-alpha-D-glucose = NADPH + alpha-D-glucose.","definition_xrefs":["MetaCyc:KETOGLUCOSE-REDUCTASE-RXN"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor","termid":"GO:0016616"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016491"],"is_obsolete":false,"name":"3-ketoglucose-reductase activity","termid":"GO:0048258"}


id: PBO:0081001
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger and BTB domain containing 39","termid":"PBO:0081001"}


id: PBO:0005392
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"complexed with Cdc5 protein Cwf20","termid":"PBO:0005392"}


id: GO:0044634
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that stops, prevents, or reduces the frequency, rate or extent of complement activation by the alternative pathway, in a different organism.","definition_xrefs":["GOC:jl","PMID:20837040"],"gene_count":0,"genotype_count":0,"name":"obsolete negative regulation of complement activation, alternative pathway in another organism (obsolete GO:0044634)","synonyms":[{"name":"negative regulation of complement activation, alternative pathway in other organism","type":"exact"}],"termid":"GO:0044634"}


id: PBO:0068142
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 5S ribosomal pseudogene 449","termid":"PBO:0068142"}


id: PBO:0062674
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 14 subfamily A member 16","termid":"PBO:0062674"}


id: GO:0099025
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"OBSOLETE. The component of the postsynaptic membrane consisting of the gene products that are tethered to the membrane only by a covalently attached anchor, such as a lipid group that is embedded in the membrane. Gene products with peptide sequences that are embedded in the membrane are excluded from this grouping.","definition_xrefs":["GOC:dos"],"gene_count":0,"genotype_count":0,"name":"obsolete anchored component of postsynaptic membrane (obsolete GO:0099025)","termid":"GO:0099025"}


id: PBO:0110811
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DNA-binding transcription factor, zf-fungal binuclear cluster type, meiosis-specific copper activator, Mca1","termid":"PBO:0110811"}


id: GO:0097294
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of XMP, xanthosine monophosphate, from simpler precursors.","definition_xrefs":["PMID:27590927","MetaCyc:IMP-DEHYDROG-RXN","GOC:yaf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"XMP biosynthetic process","termid":"GO:0097293"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0055086"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0055086","GO:0044281","GO:0008150"],"is_obsolete":false,"name":"'de novo' XMP biosynthetic process","synonyms":[{"name":"'de novo' XMP anabolism","type":"exact"},{"name":"'de novo' XMP biosynthesis","type":"exact"},{"name":"'de novo' XMP formation","type":"exact"},{"name":"'de novo' XMP synthesis","type":"exact"}],"termid":"GO:0097294"}


id: GO:0022900
data:
  {"annotated_genes":["SJAG_MIT04","SJAG_04152","SJAG_03920","SJAG_00260","SJAG_03337","SJAG_02744","SJAG_MIT13","SJAG_00522","SJAG_05629","SJAG_02398","SJAG_07006","SJAG_01355","SJAG_MIT20","SJAG_02504","SJAG_01490","SJAG_00601","SJAG_00080","SJAG_MIT03","SJAG_04397","SJAG_01671","SJAG_00755","SJAG_01077","SJAG_00976","SJAG_07007","SJAG_01190","SJAG_03490","SJAG_01763","SJAG_02646"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[92739],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0043490"},{"annotations":[112272],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0042775"},{"annotations":[112978,84428,88132,115145,115188,115165,85436,104464,110400,110821,112273,111612],"is_not":false,"rel_names":["is_a","part_of"],"summary":null,"term":"GO:0006123"},{"annotations":[109037],"is_not":false,"rel_names":["is_a","part_of"],"summary":null,"term":"GO:0006120"},{"annotations":[85397,112917,85032,109380],"is_not":false,"rel_names":["part_of","is_a"],"summary":null,"term":"GO:0006121"},{"annotations":[111260,113816,100252,114281,100657,109585,86182,115169,104140,112274],"is_not":false,"rel_names":["part_of","is_a"],"summary":null,"term":"GO:0006122"},{"annotations":[89368],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0140647"}]},"cv_name":"biological_process","definition":"A process in which a series of electron carriers operate together to transfer electrons from donors to any of several different terminal electron acceptors.","definition_xrefs":["GOC:mtg_electron_transport"],"direct_ancestors":[{"relation_name":"is_a","term_name":"generation of precursor metabolites and energy","termid":"GO:0006091"}],"gene_count":28,"genes_by_uniquename":{"SJAG_00080":null,"SJAG_00260":null,"SJAG_00522":null,"SJAG_00601":null,"SJAG_00755":null,"SJAG_00976":null,"SJAG_01077":null,"SJAG_01190":null,"SJAG_01355":null,"SJAG_01490":null,"SJAG_01671":null,"SJAG_01763":null,"SJAG_02398":null,"SJAG_02504":null,"SJAG_02646":null,"SJAG_02744":null,"SJAG_03337":null,"SJAG_03490":null,"SJAG_03920":null,"SJAG_04152":null,"SJAG_04397":null,"SJAG_05629":null,"SJAG_07006":null,"SJAG_07007":null,"SJAG_MIT03":null,"SJAG_MIT04":null,"SJAG_MIT13":null,"SJAG_MIT20":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006091"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006091","GO:0008150"],"is_obsolete":false,"name":"electron transport chain","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["Wikipedia:Electron_transport_chain"],"termid":"GO:0022900","terms_by_termid":{"GO:0006120":null,"GO:0006121":null,"GO:0006122":null,"GO:0006123":null,"GO:0042775":null,"GO:0043490":null,"GO:0140647":null}}


id: PBO:0085996
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein of unknown function; shares a promoter with YNL194C; the authentic, non-tagged protein is detected in highly purified mitochondria in high-throughput studies; YNL195C has a paralog, HBT1, that arose from the whole genome duplication","termid":"PBO:0085996"}


id: PBO:0064192
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"phospholipase A2 activating protein","termid":"PBO:0064192"}


id: GO:1903389
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of synaptic vesicle uncoating.","definition_xrefs":["GOC:TermGenie","GO_REF:0000058","GOC:pad","PMID:21563316","GOC:PARL"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of synaptic vesicle endocytosis","termid":"GO:1900243"},{"relation_name":"is_a","term_name":"negative regulation of protein depolymerization","termid":"GO:1901880"},{"relation_name":"is_a","term_name":"regulation of synaptic vesicle uncoating","termid":"GO:1903388"},{"relation_name":"negatively_regulates","term_name":"synaptic vesicle uncoating","termid":"GO:0016191"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"negatively_regulates","termid":"GO:0006810"},{"rel_name":"negatively_regulates","termid":"GO:0016192"},{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0016192"}],"interesting_parent_ids":["GO:0006810","GO:0016192","GO:0008150"],"is_obsolete":false,"name":"negative regulation of synaptic vesicle uncoating","synonyms":[{"name":"down regulation of synaptic vesicle coat depolymerization","type":"exact"},{"name":"down regulation of synaptic vesicle coat protein depolymerization","type":"exact"},{"name":"down regulation of synaptic vesicle uncoating","type":"exact"},{"name":"down-regulation of synaptic vesicle coat depolymerization","type":"exact"},{"name":"down-regulation of synaptic vesicle coat protein depolymerization","type":"exact"},{"name":"down-regulation of synaptic vesicle uncoating","type":"exact"},{"name":"downregulation of synaptic vesicle coat depolymerization","type":"exact"},{"name":"downregulation of synaptic vesicle coat protein depolymerization","type":"exact"},{"name":"downregulation of synaptic vesicle uncoating","type":"exact"},{"name":"inhibition of synaptic vesicle coat depolymerization","type":"narrow"},{"name":"inhibition of synaptic vesicle coat protein depolymerization","type":"narrow"},{"name":"inhibition of synaptic vesicle uncoating","type":"narrow"},{"name":"negative regulation of synaptic vesicle coat depolymerization","type":"exact"},{"name":"negative regulation of synaptic vesicle coat protein depolymerization","type":"exact"}],"termid":"GO:1903389"}


id: PBO:0042878
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cilia and flagella associated protein 161","termid":"PBO:0042878"}


id: PBO:0073752
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"solute carrier family 2 member 7","termid":"PBO:0073752"}


id: PBO:0043156
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"capicua transcriptional repressor pseudogene 24","termid":"PBO:0043156"}


id: GO:0060039
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of the pericardium over time, from its formation to the mature structure. The pericardium is a double-walled sac that contains the heart and the roots of the aorta, vena cava and the pulmonary artery.","definition_xrefs":["GOC:rph","GOC:dph","PMID:16376438","PMID:15138308"],"direct_ancestors":[{"relation_name":"is_a","term_name":"epithelium development","termid":"GO:0060429"},{"relation_name":"part_of","term_name":"heart development","termid":"GO:0007507"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"pericardium development","termid":"GO:0060039"}


id: PBO:0042601
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CDRT15 pseudogene 1","termid":"PBO:0042601"}


id: SO:0002215
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A DNA motif to which the S. pombe Zas1 protein binds. The consensus sequence is 5'-(Y)CCCCAY-3'.","definition_xrefs":["PMID:29735745","PomBase:vw"],"direct_ancestors":[{"relation_name":"is_a","term_name":"DNA_motif","termid":"SO:0000713"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Zas1_recognition_motif","synonyms":[{"name":"Zas1 recognition motif","type":"exact"}],"termid":"SO:0002215"}


id: GO:1901158
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of neomycin.","definition_xrefs":["GOC:TermGenie","MetaCyc:PWY-7016","UniPathway:UPA00969","GOC:yaf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"aminoglycoside antibiotic biosynthetic process","termid":"GO:0030648"},{"relation_name":"is_a","term_name":"polyol biosynthetic process","termid":"GO:0046173"},{"relation_name":"is_a","term_name":"neomycin metabolic process","termid":"GO:1901156"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0044281"],"is_obsolete":false,"name":"neomycin biosynthetic process","synonyms":[{"name":"neomycin anabolism","type":"exact"},{"name":"neomycin biosynthesis","type":"exact"},{"name":"neomycin formation","type":"exact"},{"name":"neomycin synthesis","type":"exact"}],"termid":"GO:1901158"}


id: PBO:0052097
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"potassium channel modulatory factor 1","termid":"PBO:0052097"}


id: SO:0000966
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"Structural unit composed of a self-replicating, single-stranded, circular DNA molecule.","definition_xrefs":["SO:ma"],"direct_ancestors":[{"relation_name":"has_quality","term_name":"circular","termid":"SO:0000988"},{"relation_name":"is_a","term_name":"single_stranded_RNA_chromosome","termid":"SO:0000962"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"circular_single_stranded_RNA_chromosome","synonyms":[{"name":"circular single stranded RNA chromosome","type":"exact"}],"termid":"SO:0000966"}


id: GO:0047161
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: hydroxymalonate + sinapoyl-CoA = CoA + sinapoyltartronate.","definition_xrefs":["RHEA:10952","EC:2.3.1.106"],"direct_ancestors":[{"relation_name":"is_a","term_name":"O-hydroxycinnamoyltransferase activity","termid":"GO:0050737"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016746"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003824","GO:0016746","GO:0016740","GO:0003674"],"is_obsolete":false,"name":"tartronate O-hydroxycinnamoyltransferase activity","secondary_identifiers":["KEGG_REACTION:R03965","MetaCyc:2.3.1.106-RXN"],"synonyms":[{"name":"hydroxycinnamoyl-coenzyme-A:tartronate hydroxycinnamoyltransferase activity","type":"related"},{"name":"sinapoyl-CoA:2-hydroxymalonate O-(hydroxycinnamoyl)transferase activity","type":"related"},{"name":"tartronate sinapoyltransferase activity","type":"related"}],"termid":"GO:0047161"}


id: PBO:0069747
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 1028, pseudogene","termid":"PBO:0069747"}


id: GO:1990498
data:
  {"annotated_genes":["SJAG_03073","SJAG_02624","SJAG_01330","SJAG_02761","SJAG_00918","SJAG_03540","SJAG_01613","SJAG_01224"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[96538,97587,102480,114777],"is_not":false,"summary":null,"term":"GO:1990498"},{"annotations":[103676],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1990941"},{"annotations":[114257,103677,95381,94791],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1990537"}]},"cv_name":"cellular_component","definition":"Any microtubule that is part of a mitotic spindle; anchored at one spindle pole.","definition_xrefs":["GOC:vw"],"direct_ancestors":[{"relation_name":"is_a","term_name":"spindle microtubule","termid":"GO:0005876"},{"relation_name":"part_of","term_name":"mitotic spindle","termid":"GO:0072686"}],"gene_count":8,"genes_by_uniquename":{"SJAG_00918":null,"SJAG_01224":null,"SJAG_01330":null,"SJAG_01613":null,"SJAG_02624":null,"SJAG_02761":null,"SJAG_03073":null,"SJAG_03540":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0072686"},{"rel_name":"part_of","termid":"GO:0015630"}],"interesting_parent_ids":["GO:0005575","GO:0072686","GO:0015630"],"is_obsolete":false,"name":"mitotic spindle microtubule","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:1990498","terms_by_termid":{"GO:1990498":null,"GO:1990537":null,"GO:1990941":null}}


id: PBO:0072335
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein S26 pseudogene 21","termid":"PBO:0072335"}


id: PBO:0027638
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_spindle_during_meiosis_I","termid":"PBO:0027638"}


id: PBO:0059594
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MT-ATP6 pseudogene 6","termid":"PBO:0059594"}


id: GO:1903205
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that modulates the frequency, rate or extent of hydrogen peroxide-induced cell death.","definition_xrefs":["GOC:bf","GOC:PARL","GO_REF:0000058","GOC:TermGenie"],"gene_count":0,"genotype_count":0,"name":"obsolete regulation of hydrogen peroxide-induced cell death (obsolete GO:1903205)","synonyms":[{"name":"protection against hydrogen peroxide-mediated cell death","type":"related"},{"name":"regulation of cell death in response to H2O2","type":"exact"},{"name":"regulation of cell death in response to hydrogen peroxide","type":"exact"},{"name":"regulation of hydrogen peroxide-mediated cell death","type":"related"}],"termid":"GO:1903205"}


id: GO:0036280
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a L-canavanine stimulus. L-canavanine is L-homoserine substituted at oxygen with a guanidino (carbamimidamido) group.","definition_xrefs":["GOC:al"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular response to amino acid stimulus","termid":"GO:0071230"},{"relation_name":"is_a","term_name":"cellular response to organonitrogen compound","termid":"GO:0071417"},{"relation_name":"is_a","term_name":"response to L-canavanine","termid":"GO:1901354"},{"relation_name":"is_a","term_name":"cellular response to oxygen-containing compound","termid":"GO:1901701"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cellular response to L-canavanine","termid":"GO:0036280"}


id: GO:0097512
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A cardiac myofibril is a myofibril specific to cardiac muscle cells.","definition_xrefs":["GOC:cjm","GOC:devbiol"],"direct_ancestors":[{"relation_name":"is_a","term_name":"myofibril","termid":"GO:0030016"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575","GO:0005737"],"is_obsolete":false,"name":"cardiac myofibril","termid":"GO:0097512"}


id: PBO:0052933
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"keratin associated protein 21-1","termid":"PBO:0052933"}


id: PR:Q09886
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- mug42 gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q09886"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"meiotically up-regulated gene 42 protein (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC584.12","synonyms":[{"name":"Spom972h-mug42","type":"exact"}],"termid":"PR:Q09886"}


id: PATO:0000365
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A directional quality inhering in a bearer by virtue of the bearer's direction from a higher to a lower point.","definition_xrefs":["PATOC:GVG"],"direct_ancestors":[{"relation_name":"is_a","term_name":"direction","termid":"PATO:0000039"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"down","termid":"PATO:0000365"}


id: GO:0010828
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that increases the frequency, rate or extent of glucose transport across a membrane. Glucose transport is the directed movement of the hexose monosaccharide glucose into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.","definition_xrefs":["GOC:BHF","GOC:tb","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of glucose transmembrane transport","termid":"GO:0010827"},{"relation_name":"is_a","term_name":"positive regulation of transmembrane transport","termid":"GO:0034764"},{"relation_name":"positively_regulates","term_name":"glucose transmembrane transport","termid":"GO:1904659"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0055085"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"positively_regulates","termid":"GO:0055085"},{"rel_name":"positively_regulates","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0006810","GO:0008150","GO:0055085"],"is_obsolete":false,"name":"positive regulation of glucose transmembrane transport","synonyms":[{"name":"positive regulation of glucose transport","type":"related"}],"termid":"GO:0010828"}


id: PBO:0064069
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"piwi-interacting RNA cluster 103","termid":"PBO:0064069"}


id: GO:0044524
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The modification of a protein amino acid by the addition of sulfur.","definition_xrefs":["GOC:jl","GOC:jsg","PMID:22169477","PMID:19903941","PMID:8161529"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein modification process","termid":"GO:0036211"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"protein sulfhydration","termid":"GO:0044524"}


id: GO:0018195
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The modification of peptidyl-arginine.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"peptidyl-amino acid modification","termid":"GO:0018193"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"peptidyl-arginine modification","termid":"GO:0018195"}


id: GO:0034093
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that increases the extent to which the association between sister chromatids of a replicated chromosome is maintained.","definition_xrefs":["GOC:mah","GOC:vw"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of maintenance of sister chromatid cohesion","termid":"GO:0034091"},{"relation_name":"is_a","term_name":"positive regulation of sister chromatid cohesion","termid":"GO:0045876"},{"relation_name":"positively_regulates","term_name":"maintenance of sister chromatid cohesion","termid":"GO:0034086"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"positively_regulates","termid":"GO:0007049"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0007049"}],"interesting_parent_ids":["GO:0008150","GO:0007049"],"is_obsolete":false,"name":"positive regulation of maintenance of sister chromatid cohesion","termid":"GO:0034093"}


id: PBO:0090734
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"autophagy associated protein kinase regulator Atg11","termid":"PBO:0090734"}


id: GO:0050838
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The methylation of 5-hydroxy-L-lysine to form peptidyl-N6,N6,N6-trimethyl-5-hydroxy-L-lysine.","definition_xrefs":["RESID:AA0359"],"direct_ancestors":[{"relation_name":"is_a","term_name":"peptidyl-lysine methylation","termid":"GO:0018022"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"peptidyl-5-hydroxy-L-lysine trimethylation","termid":"GO:0050838"}


id: GO:0005836
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A protein complex that possesses fatty-acyl-CoA synthase activity.","definition_xrefs":["GOC:mah","BRENDA:2.3.1.86"],"direct_ancestors":[{"relation_name":"is_a","term_name":"transferase complex","termid":"GO:1990234"},{"relation_name":"part_of","term_name":"cytosol","termid":"GO:0005829"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005829"},{"rel_name":"part_of","termid":"GO:0005737"}],"interesting_parent_ids":["GO:0005575","GO:0032991","GO:0005829","GO:0005737"],"is_obsolete":false,"name":"fatty-acyl-CoA synthase complex","synonyms":[{"name":"fatty acyl CoA synthase complex","type":"exact"}],"termid":"GO:0005836"}


id: FYPO:0004483
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which vacuole fusion is abnormal during a cellular response to a hypotonic environment.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal vacuole fusion during vegetative growth","termid":"FYPO:0004482"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0001320","FYPO:0000002","FYPO:0001985"],"is_obsolete":false,"name":"abnormal vacuole fusion during cellular hypotonic response","synonyms":[{"name":"abnormal homotypic vacuole fusion during cellular hypotonic response","type":"exact"},{"name":"abnormal vacuole fusion during cellular hypotonic response during mitotic cell cycle","type":"related"},{"name":"abnormal vacuole fusion during cellular hypotonic response during vegetative growth","type":"exact"},{"name":"abnormal vacuole fusion during hypotonic stress","type":"exact"},{"name":"abnormal vacuole fusion, non-autophagic, during cellular hypotonic response","type":"exact"}],"termid":"FYPO:0004483"}


id: PBO:0040511
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"arginine vasopressin receptor 1B","termid":"PBO:0040511"}


id: GO:1905423
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of plant organ morphogenesis.","definition_xrefs":["GOC:TermGenie","GOC:tb","GO_REF:0000058"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of developmental process","termid":"GO:0051094"},{"relation_name":"is_a","term_name":"positive regulation of multicellular organismal process","termid":"GO:0051240"},{"relation_name":"is_a","term_name":"regulation of plant organ morphogenesis","termid":"GO:1905421"},{"relation_name":"positively_regulates","term_name":"plant organ morphogenesis","termid":"GO:1905392"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of plant organ morphogenesis","synonyms":[{"name":"activation of plant organ morphogenesis","type":"narrow"},{"name":"up regulation of plant organ morphogenesis","type":"exact"},{"name":"up-regulation of plant organ morphogenesis","type":"exact"},{"name":"upregulation of plant organ morphogenesis","type":"exact"}],"termid":"GO:1905423"}


id: GO:0009077
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The chemical reactions and pathways resulting in the breakdown of amino acids of the histidine family.","definition_xrefs":["GOC:ai"],"gene_count":0,"genotype_count":0,"name":"obsolete histidine family amino acid catabolic process (obsolete GO:0009077)","synonyms":[{"name":"histidine family amino acid breakdown","type":"exact"},{"name":"histidine family amino acid catabolic process","type":"exact"},{"name":"histidine family amino acid catabolism","type":"exact"},{"name":"histidine family amino acid degradation","type":"exact"}],"termid":"GO:0009077"}


id: GO:0010441
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of the guard cell over time, from its formation to the mature structure.","definition_xrefs":["GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell development","termid":"GO:0048468"},{"relation_name":"part_of","term_name":"guard cell differentiation","termid":"GO:0010052"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"guard cell development","termid":"GO:0010441"}


id: PBO:0041123
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"BTB domain containing 6 pseudogene 1","termid":"PBO:0041123"}


id: PBO:0049831
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"haloacid dehalogenase like hydrolase domain containing 2","termid":"PBO:0049831"}


id: PBO:0053260
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"LIF antisense RNA 1","termid":"PBO:0053260"}


id: GO:0034737
data:
  {"annotated_genes":["SJAG_04049","SJAG_04059"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[84987,114996],"is_not":false,"summary":null,"term":"GO:0034737"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: acyl-CoA + ergosterol = CoA + ergosterol ester.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"sterol O-acyltransferase activity","termid":"GO:0004772"}],"gene_count":2,"genes_by_uniquename":{"SJAG_04049":null,"SJAG_04059":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016746"}],"interesting_parent_ids":["GO:0016746","GO:0016740","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"ergosterol O-acyltransferase activity","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0034737","terms_by_termid":{"GO:0034737":null}}


id: PBO:0073933
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"solute carrier family 17 member 6","termid":"PBO:0073933"}


id: PBO:0046529
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"endoplasmic reticulum protein 29","termid":"PBO:0046529"}


id: PBO:0035798
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_histone_H3-K14_acetylation_at_protein_coding_gene_during_vegetative_growth","termid":"PBO:0035798"}


id: GO:0001015
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The synthesis of small nucleolar RNA (snoRNA) from a DNA template by RNA polymerase II, originating at an RNA polymerase II promoter.","definition_xrefs":["GOC:txnOH"],"direct_ancestors":[{"relation_name":"is_a","term_name":"transcription by RNA polymerase II","termid":"GO:0006366"},{"relation_name":"is_a","term_name":"sno(s)RNA transcription","termid":"GO:0009302"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006351"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0016074"},{"rel_name":"part_of","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0008150","GO:0006351","GO:0016074","GO:0010467"],"is_obsolete":false,"name":"snoRNA transcription by RNA polymerase II","synonyms":[{"name":"snoRNA transcription from an RNA polymerase II promoter","type":"exact"}],"termid":"GO:0001015"}


id: GO:0072707
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a sodium dodecyl sulfate (SDS) stimulus.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular response to organic substance","termid":"GO:0071310"},{"relation_name":"is_a","term_name":"response to sodium dodecyl sulfate","termid":"GO:0072706"},{"relation_name":"is_a","term_name":"cellular response to oxygen-containing compound","termid":"GO:1901701"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cellular response to sodium dodecyl sulfate","synonyms":[{"name":"cellular response to SDS","type":"exact"}],"termid":"GO:0072707"}


id: GO:2000843
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of testosterone secretion.","definition_xrefs":["GOC:sl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of lipid transport","termid":"GO:0032368"},{"relation_name":"is_a","term_name":"regulation of hormone secretion","termid":"GO:0046883"},{"relation_name":"regulates","term_name":"testosterone secretion","termid":"GO:0035936"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0023052"},{"rel_name":"regulates","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0008150","GO:0023052","GO:0006810"],"is_obsolete":false,"name":"regulation of testosterone secretion","termid":"GO:2000843"}


id: PBO:0061829
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"O-GlcNAcase","termid":"PBO:0061829"}


id: PATO:0000411
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A shape quality inhering in a bearer by virtue of the bearer's being such that every part of the surface or the circumference is equidistant from the center.","definition_xrefs":["thefreedictionary.com:thefreedictionary.com"],"direct_ancestors":[{"relation_name":"is_a","term_name":"elliptic","termid":"PATO:0000947"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"circular","synonyms":[{"name":"round","type":"related"},{"name":"rounded","type":"related"}],"termid":"PATO:0000411"}


id: PBO:0060190
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mucin 8","termid":"PBO:0060190"}


id: PBO:0045597
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"double homeobox 4 like 8 (pseudogene)","termid":"PBO:0045597"}


id: PBO:0005151
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nucleosome assembly protein Nap1","termid":"PBO:0005151"}


id: GO:0055129
data:
  {"annotated_genes":["SJAG_00120","SJAG_00660","SJAG_00495","SJAG_03457"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[87081,96324,97950,102946],"is_not":false,"summary":null,"term":"GO:0055129"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of L-proline, an L-enantiomer of a chiral, cyclic, nonessential alpha-amino acid found in peptide linkage in proteins.","definition_xrefs":["GOC:ecd"],"direct_ancestors":[{"relation_name":"is_a","term_name":"proline biosynthetic process","termid":"GO:0006561"},{"relation_name":"is_a","term_name":"organic cyclic compound biosynthetic process","termid":"GO:1901362"}],"gene_count":4,"genes_by_uniquename":{"SJAG_00120":null,"SJAG_00495":null,"SJAG_00660":null,"SJAG_03457":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0006520"}],"interesting_parent_ids":["GO:0008150","GO:0006520","GO:0044281"],"is_obsolete":false,"name":"L-proline biosynthetic process","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"pyrrolidine-2-carboxylic acid biosynthetic process","type":"broad"}],"termid":"GO:0055129","terms_by_termid":{"GO:0055129":null}}


id: PBO:0080761
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"XIAP antisense RNA 1","termid":"PBO:0080761"}


id: PBO:0081981
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger and SCAN domain containing 5C","termid":"PBO:0081981"}


id: FYPO:0006569
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which DNA repair is normal (i.e. indistinguishable from wild type).","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal metabolic process during vegetative growth","termid":"FYPO:0000859"},{"relation_name":"is_a","term_name":"normal cellular response to stress during vegetative growth","termid":"FYPO:0000968"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0000298"},{"rel_name":"is_a","termid":"FYPO:0001312"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0000257","FYPO:0000298","FYPO:0001312","FYPO:0000002","FYPO:0001320"],"is_obsolete":false,"name":"normal DNA repair","synonyms":[{"name":"normal DNA repair during mitotic cell cycle","type":"related"},{"name":"normal DNA repair during vegetative growth","type":"exact"}],"termid":"FYPO:0006569"}


id: GO:0072574
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The multiplication or reproduction of hepatocytes, resulting in the expansion of a cell population. Hepatocytes form the main structural component of the liver. They are specialized epithelial cells that are organized into interconnected plates called lobules.","definition_xrefs":["GOC:BHF","GOC:mah","CL:0000182"],"direct_ancestors":[{"relation_name":"is_a","term_name":"epithelial cell proliferation involved in liver morphogenesis","termid":"GO:0072575"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"hepatocyte proliferation","termid":"GO:0072574"}


id: PBO:0056042
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"lactotransferrin","termid":"PBO:0056042"}


id: PBO:0088300
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Alpha/Beta hydrolase fold","termid":"PBO:0088300"}


id: PBO:0030904
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_cytoskeleton_organization_during_vegetative_growth","termid":"PBO:0030904"}


id: PATO:0001670
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A susceptibility toward an external stimulus which is lower than normal/average.","definition_xrefs":["PATOC:GVG"],"direct_ancestors":[{"relation_name":"decreased_in_magnitude_relative_to","term_name":"normal","termid":"PATO:0000461"},{"relation_name":"is_a","term_name":"susceptible toward","termid":"PATO:0001152"},{"relation_name":"is_a","term_name":"decreased object quality","termid":"PATO:0002303"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"decreased susceptibility toward","synonyms":[{"name":"decreased susceptibility","type":"exact"},{"name":"low susceptibility toward","type":"exact"}],"termid":"PATO:0001670"}


id: PBO:0048349
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glyceraldehyde-3-phosphate dehydrogenase pseudogene 60","termid":"PBO:0048349"}


id: PR:Q4ZGE1
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPAC8C9.19 gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q4ZGE1"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"UPF0618 protein C8C9.19 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC8C9.19","synonyms":[{"name":"Spom972h-SPAC8C9.19","type":"exact"}],"termid":"PR:Q4ZGE1"}


id: GO:0002285
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A change in morphology and behavior of a lymphocyte resulting from exposure to a specific antigen, mitogen, cytokine, chemokine, cellular ligand, or soluble factor, leading to the initiation or perpetuation of an immune response.","definition_xrefs":["GOC:add","ISBN:0781735149"],"direct_ancestors":[{"relation_name":"is_a","term_name":"leukocyte activation involved in immune response","termid":"GO:0002366"},{"relation_name":"is_a","term_name":"lymphocyte activation","termid":"GO:0046649"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"lymphocyte activation involved in immune response","synonyms":[{"name":"lymphocyte activation during immune response","type":"related"}],"termid":"GO:0002285"}


id: PBO:0054266
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1651","termid":"PBO:0054266"}


id: GO:0047426
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: H2O + ricinine = NH3 + 3-carboxy-4-methoxy-N-methyl-2-pyridone.","definition_xrefs":["EC:3.5.5.2","MetaCyc:3.5.5.2-RXN"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nitrilase activity","termid":"GO:0000257"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0016810"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016787","GO:0003824","GO:0003674","GO:0016810"],"is_obsolete":false,"name":"ricinine nitrilase activity","secondary_identifiers":["RHEA:22704"],"synonyms":[{"name":"ricinine aminohydrolase activity","type":"related"}],"termid":"GO:0047426"}


id: PBO:0078239
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"T cell receptor beta variable 20/OR9-2 (non-functional)","termid":"PBO:0078239"}


id: FYPO:0008197
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which autophagic degradation of the endoplasmic reticulum occurs to a lower extent than normal.","definition_xrefs":["PMID:37553386"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal reticulophagy during vegetative growth","termid":"FYPO:0007445"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0001320","FYPO:0000002","FYPO:0001985"],"is_obsolete":false,"name":"decreased reticulophagy during vegetative growth","termid":"FYPO:0008197"}


id: GO:0034863
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 2,4,4-trimethyl-1-pentanol = 2,4,4-trimethylpentanal + 2 H+ + 2 e-.","definition_xrefs":["UM-BBD_reactionID:r1270"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on CH-OH group of donors","termid":"GO:0016614"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0016491","GO:0003824"],"is_obsolete":false,"name":"2,4,4-trimethyl-1-pentanol dehydrogenase activity","termid":"GO:0034863"}


id: GO:0015900
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The directed movement of benomyl into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Benomyl, methyl 1-(butylcarbamoyl)-2-benzimidazolecarbamate, is a systemic agricultural fungicide used for control of certain fungal diseases of stone fruit.","definition_xrefs":["GOC:curators"],"gene_count":0,"genotype_count":0,"name":"obsolete benomyl transport (obsolete GO:0015900)","termid":"GO:0015900"}


id: PBO:0076972
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transglutaminase 3","termid":"PBO:0076972"}


id: PBO:0111812
data:
  {"annotation_feature_type":"gene","cv_name":"pombase_family_or_domain","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zf-C2HC5 type","termid":"PBO:0111812"}


id: PBO:0055126
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2545","termid":"PBO:0055126"}


id: GO:0140449
data:
  {"annotated_genes":["SJAG_01745"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[87532],"is_not":false,"summary":null,"term":"GO:0140449"}]},"cv_name":"molecular_function","definition":"The binding activity of a molecule that brings together the centromeric region of a chromosome and the inner nuclear membrane by interacting with both the centromere/kinetochore complex and the nuclear membrane, in order to establish and maintain the centromere/kinetochore location.","definition_xrefs":["PMID:31635174"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein-membrane adaptor activity","termid":"GO:0043495"}],"gene_count":1,"genes_by_uniquename":{"SJAG_01745":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0030674"},{"rel_name":"is_a","termid":"GO:0060090"}],"interesting_parent_ids":["GO:0060090","GO:0030674","GO:0003674"],"is_obsolete":false,"name":"centromere-nuclear envelope anchor activity","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"centromere nuclear envelope anchor activity","type":"exact"},{"name":"centromere nuclear envelope tether activity","type":"exact"},{"name":"centromere-inner nuclear envelope anchor activity","type":"exact"},{"name":"centromere-inner nuclear envelope tether activity","type":"exact"},{"name":"chromosome, centromeric region-nuclear envelope anchor activity","type":"exact"},{"name":"nuclear envelope-centromere anchor activity","type":"exact"},{"name":"nuclear envelope-centromere tether activity","type":"exact"}],"termid":"GO:0140449","terms_by_termid":{"GO:0140449":null}}


id: GO:0015951
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways by which a purine ribonucleotide is synthesized from another purine ribonucleotide.","definition_xrefs":["ISBN:0471394831","ISBN:0306444747","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"purine ribonucleotide metabolic process","termid":"GO:0009150"},{"relation_name":"is_a","term_name":"purine nucleotide interconversion","termid":"GO:0015950"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0055086"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0055086","GO:0044281","GO:0008150"],"is_obsolete":false,"name":"purine ribonucleotide interconversion","termid":"GO:0015951"}


id: GO:0004194
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the hydrolysis of peptide bonds. Preferential cleavage: hydrophobic, preferably aromatic, residues in P1 and P1' positions. Cleaves Phe1-Val2, Gln4-His5, Glu13-Ala14, Ala14-Leu15, Leu15-Tyr16, Tyr16-Leu17, Gly23-Phe24, Phe24-Phe25 and Phe25-Tyr26 bonds in the B chain of insulin.","definition_xrefs":["EC:3.4.23.1"],"gene_count":0,"genotype_count":0,"name":"obsolete pepsin A activity (obsolete GO:0004194)","synonyms":[{"name":"P I","type":"related"},{"name":"P II","type":"related"},{"name":"elixir lactate of pepsin","type":"related"},{"name":"fundus-pepsin","type":"related"},{"name":"lactated pepsin","type":"related"},{"name":"lactated pepsin elixir","type":"related"},{"name":"pepsin A activity","type":"exact"},{"name":"pepsin D","type":"related"},{"name":"pepsin R","type":"related"},{"name":"pepsin activity","type":"broad"},{"name":"pepsin fortior","type":"related"}],"termid":"GO:0004194"}


id: GO:0097594
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"Trilaminar structure extending perpendicularly into the cytoplasm along the length of ventral disc microtubules in Giardia species (trophozoite stage). Constituents of dorsal microribbons (also called dorsal ribbons or microribbons) include alpha-coiled-helix proteins approximately 29 to 38 kDa in size. These proteins line the edges of the microribbons but are not found in microtubules. Tubulins are not found in microribbons.","definition_xrefs":["GOC:giardia","PMID:11432808"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular anatomical entity","termid":"GO:0110165"},{"relation_name":"part_of","term_name":"ventral disc","termid":"GO:0097597"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"ventral disc dorsal microribbon","synonyms":[{"name":"dorsal microribbon","type":"broad"},{"name":"dorsal ribbon","type":"broad"},{"name":"microribbon","type":"broad"},{"name":"ventral disk dorsal microribbon","type":"related"}],"termid":"GO:0097594"}


id: GO:0046008
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the receptiveness of a female to male advances subsequent to mating.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of female receptivity","termid":"GO:0045924"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of female receptivity, post-mating","termid":"GO:0046008"}


id: SO:1000132
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"The effect of a change in nucleotide sequence.","definition_xrefs":["SO:ke"],"gene_count":0,"genotype_count":0,"name":"OBSOLETE SO:1000132 sequence_variant_effect (obsolete SO:1000132)","synonyms":[{"name":"sequence variant effect","type":"related"}],"termid":"SO:1000132"}


id: PBO:0062178
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"OR4M2 overlapping transcript 1","termid":"PBO:0062178"}


id: PBO:0052900
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"keratin associated protein 10-11","termid":"PBO:0052900"}


id: PBO:0049812
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"HDAC4 antisense RNA 1","termid":"PBO:0049812"}


id: GO:0102520
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: O-phospho-L-threonine + H2O = L-threonine + hydrogenphosphate.","definition_xrefs":["EC:3.1.3.-","GOC:pz"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phosphatase activity","termid":"GO:0016791"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0016788"}],"interesting_parent_ids":["GO:0016788","GO:0003674","GO:0003824","GO:0016787"],"is_obsolete":false,"name":"L-threonine O-3-phosphate phosphatase activity","secondary_identifiers":["MetaCyc:RXN-14505"],"termid":"GO:0102520"}


id: PBO:0069229
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 484, pseudogene","termid":"PBO:0069229"}


id: PBO:0003533
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Borealin homolog Nbl1","termid":"PBO:0003533"}


id: GO:0141190
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A G protein-coupled receptor signaling pathway that starts with an opsin molecule being activated by a photon. Opsins include rhodopsin and others visual receptors bind heterotrimeric transducin G proteins upon activation. Activated transducin alpha-subunit activates cGMP phosphodiesterase, which breaks down cGMP. The decrease in cGMP concentration leads to closure of cGMP-gated (CNG) channels, blockage of Na+ influx, and hyperpolarization of photoreceptor plasma membrane, leading to transmission of signal through synapses. The signal is terminated by phosphorylation of the C-terminal tail of rhodopsin by rhodopsin kinase to allow arrestin to bind and block G protein binding. Typical examples are rhabdomeric photoreceptors in the eyes of deuterostomes.","definition_xrefs":["PMID:37159291","PMID:36272560","PMID:36499010","PMID:19720651"],"direct_ancestors":[{"relation_name":"is_a","term_name":"G protein-mediated opsin signaling pathway","termid":"GO:0141189"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"transducin-mediated opsin signaling pathway","synonyms":[{"name":"Gt-mediated opsin signaling pathway","type":"exact"},{"name":"cGMP-mediated opsin signaling pathway","type":"exact"},{"name":"cGMP-mediated rhodopsin signaling pathway","type":"narrow"},{"name":"ciliary opsin-mediated signaling pathway","type":"exact"},{"name":"cyclic-GMP-mediated opsin signaling pathway","type":"exact"},{"name":"cyclic-nucleotide-mediated opsin signaling pathway","type":"exact"}],"termid":"GO:0141190"}


id: FYPO:0004679
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of polyadenylated 25S rRNA measured in a cell is too low to detect.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"RNA absent from cell during vegetative growth","termid":"FYPO:0003161"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"output_of","termid":"FYPO:0006551"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"output_of","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000002","FYPO:0001320","FYPO:0005447","FYPO:0006551"],"is_obsolete":false,"name":"polyadenylated 25S rRNA absent from cell","synonyms":[{"name":"polyadenylated 25S rRNA absent from cell during mitotic cell cycle","type":"related"},{"name":"polyadenylated 25S rRNA absent from cell during vegetative growth","type":"exact"},{"name":"polyadenylated 25S rRNA transcripts absent from cell during vegetative growth","type":"exact"},{"name":"undetectable polyadenylated 25S rRNA level during vegetative growth","type":"exact"}],"termid":"FYPO:0004679"}


id: FYECO:0000385
data:
  {"annotation_feature_type":"gene","cv_name":"fission_yeast_phenotype_condition","definition":"An experimental condition in which fluconazole was added to the medium or assay buffer in excess compared to standard medium or assay buffers.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"grouping excess","termid":"FYECO:0000109"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"+ fluconazole","termid":"FYECO:0000385"}


id: PBO:0072694
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RUNX3 antisense RNA 1","termid":"PBO:0072694"}


id: FYPO:0002112
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell morphology phenotype in which a vegetatively growing cell is viable, and is curved along the long axis. In a curved cell, the long axis follows a smooth bend rather than a straight line.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"has_part","term_name":"curved vegetative cell","termid":"FYPO:0000016"},{"relation_name":"is_a","term_name":"curved vegetative cell","termid":"FYPO:0000016"},{"relation_name":"is_a","term_name":"viable vegetative cell with abnormal cell shape","termid":"FYPO:0002197"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000004"},{"rel_name":"has_part","termid":"FYPO:0000005"},{"rel_name":"has_part","termid":"FYPO:0001320"},{"rel_name":"has_part","termid":"FYPO:0000004"},{"rel_name":"is_a","termid":"FYPO:0000005"},{"rel_name":"has_part","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0000005","FYPO:0000004","FYPO:0001985","FYPO:0000002","FYPO:0001320"],"is_obsolete":false,"name":"viable curved vegetative cell","synonyms":[{"name":"curved viable cell","type":"exact"},{"name":"viable curved cell","type":"exact"},{"name":"viable curved cell during vegetative growth","type":"exact"},{"name":"viable curved vegetative cell during mitotic cell cycle","type":"related"}],"termid":"FYPO:0002112"}


id: PBO:0079363
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tubulin alpha 4b","termid":"PBO:0079363"}


id: PBO:0111523
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NIFK pseudogene 3","termid":"PBO:0111523"}


id: PBO:0071480
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L32 pseudogene 21","termid":"PBO:0071480"}


id: PBO:0002597
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"proteasome-dependent catabolite inactivation protein, ubiquitin ligase complex subunit (predicted)","termid":"PBO:0002597"}


id: GO:0050031
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: L-pipecolate + O2 = 2,3,4,5-tetrahydropyridine-2-carboxylate + H2O2 + H+. Delta1-piperideine-6-carboxylate is also known as 2,3,4,5-tetrahydropyridine-2-carboxylate.","definition_xrefs":["EC:1.5.3.7","RHEA:11992"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the CH-NH group of donors, oxygen as acceptor","termid":"GO:0016647"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016491"],"is_obsolete":false,"name":"L-pipecolate oxidase activity","secondary_identifiers":["KEGG_REACTION:R02204","MetaCyc:L-PIPECOLATE-OXIDASE-RXN","Reactome:R-HSA-6783880"],"synonyms":[{"name":"L-pipecolate:oxygen 1,6-oxidoreductase activity","type":"related"},{"name":"L-pipecolic acid oxidase activity","type":"related"}],"termid":"GO:0050031"}


id: PBO:0078881
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transient receptor potential cation channel subfamily V member 4","termid":"PBO:0078881"}


id: PBO:0081512
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein 418","termid":"PBO:0081512"}


id: FYECO:0000189
data:
  {"annotation_feature_type":"gene","cv_name":"fission_yeast_phenotype_condition","definition":"An experimental condition in which pantothenate was added to the medium or assay buffers in a limiting quantity compared to standard medium or assay buffers.","definition_xrefs":["PomBase:al"],"direct_ancestors":[{"relation_name":"is_a","term_name":"grouping limited","termid":"FYECO:0000011"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"+ limited pantothenate","termid":"FYECO:0000189"}


id: PBO:0091538
data:
  {"annotation_feature_type":"gene","cv_name":"complementation","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"not functionally complemented by human TPM1 skeletal muscle isoform","termid":"PBO:0091538"}


id: RO:0002583
data:
  {"annotation_feature_type":"gene","cv_name":"relationship","definition":"x existence starts at point y if and only if the time point at which x starts is equivalent to the time point at which y ends.","direct_ancestors":[{"relation_name":"is_a","term_name":"relation_between_structure_and_stage","termid":"RO:0002487"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"existence_starts_at_point","termid":"RO:0002583"}


id: GO:0004855
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: xanthine + H2O + O2 = urate + hydrogen peroxide.","definition_xrefs":["EC:1.17.3.2"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on CH or CH2 groups, oxygen as acceptor","termid":"GO:0016727"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016491","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"xanthine oxidase activity","secondary_identifiers":["RHEA:21132","UM-BBD_enzymeID:e0781","Reactome:R-HSA-9748991","MetaCyc:XANTHINE-OXIDASE-RXN","Reactome:R-HSA-74258"],"synonyms":[{"name":"Schardinger enzyme activity","type":"related"},{"name":"hypoxanthine-xanthine oxidase activity","type":"broad"},{"name":"schardinger enzyme","type":"related"},{"name":"xanthine oxidoreductase activity","type":"broad"},{"name":"xanthine:O2 oxidoreductase activity","type":"related"},{"name":"xanthine:oxygen oxidoreductase activity","type":"related"},{"name":"xanthine:xanthine oxidase activity","type":"related"}],"termid":"GO:0004855"}


id: PBO:0036448
data:
  {"annotation_feature_type":"gene","cv_name":"name_description","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Can't Stop Synthesising cell wall","termid":"PBO:0036448"}


id: GO:0031327
data:
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