# terms

id: GO:0003218
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The developmental process pertaining to the initial formation of a left cardiac ventricle from unspecified parts.","definition_xrefs":["GOC:mtg_heart"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cardiac ventricle formation","termid":"GO:0003211"},{"relation_name":"part_of","term_name":"cardiac left ventricle morphogenesis","termid":"GO:0003214"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cardiac left ventricle formation","termid":"GO:0003218"}


id: PBO:0002285
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial ATPase (predicted)","termid":"PBO:0002285"}


id: PBO:0091011
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NADH-dependent flavin oxidoreductase, implicated in cellular detoxification from family members","termid":"PBO:0091011"}


id: GO:0045267
data:
  {"annotated_genes":["SJAG_02598","SJAG_02564"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[89030,85341],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0005754"}]},"cv_name":"cellular_component","definition":"The hexamer that possesses the catalytic activity of the mitochondrial hydrogen-transporting ATP synthase.","definition_xrefs":["PMID:10838056"],"direct_ancestors":[{"relation_name":"is_a","term_name":"membrane protein complex","termid":"GO:0098796"},{"relation_name":"part_of","term_name":"proton-transporting ATP synthase complex, catalytic core F(1)","termid":"GO:0045261"}],"gene_count":2,"genes_by_uniquename":{"SJAG_02564":null,"SJAG_02598":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0005575","GO:0032991"],"is_obsolete":false,"name":"proton-transporting ATP synthase, catalytic core","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"hydrogen-transporting ATP synthase, catalytic core","type":"exact"}],"termid":"GO:0045267","terms_by_termid":{"GO:0005754":null}}


id: GO:0034397
data:
  {"annotated_genes":["SJAG_00756","SJAG_01777","SJAG_03092","SJAG_01263","SJAG_05196","SJAG_03685","SJAG_03287","SJAG_01837","SJAG_01538","SJAG_01067","SJAG_03299","SJAG_03048","SJAG_03680","SJAG_01601","SJAG_05260","SJAG_05226","SJAG_01584"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[112831],"is_not":false,"rel_names":["is_a","part_of"],"summary":null,"term":"GO:0120110"},{"annotations":[85971,102117],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0070197"},{"annotations":[83632,85972,98992,96076,101268],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0032121"},{"annotations":[92896,83633,102118,112106,113692,113827],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0045141"},{"annotations":[102119,110169],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0044821"},{"annotations":[113026,85973,95297,101269,102120],"is_not":false,"rel_names":["is_a","part_of"],"summary":null,"term":"GO:0044820"},{"annotations":[98543],"is_not":false,"rel_names":["negatively_regulates","regulates"],"summary":null,"term":"GO:1904537"},{"annotations":[112584,85226],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0034398"}]},"cv_name":"biological_process","definition":"Any process in which a telomere is transported to, and/or maintained in, a specific location.","definition_xrefs":["GOC:vw","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"chromosome localization","termid":"GO:0050000"}],"gene_count":17,"genes_by_uniquename":{"SJAG_00756":null,"SJAG_01067":null,"SJAG_01263":null,"SJAG_01538":null,"SJAG_01584":null,"SJAG_01601":null,"SJAG_01777":null,"SJAG_01837":null,"SJAG_03048":null,"SJAG_03092":null,"SJAG_03287":null,"SJAG_03299":null,"SJAG_03680":null,"SJAG_03685":null,"SJAG_05196":null,"SJAG_05226":null,"SJAG_05260":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0051179"}],"interesting_parent_ids":["GO:0008150","GO:0051179"],"is_obsolete":false,"name":"telomere localization","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"telomere localisation","type":"exact"}],"termid":"GO:0034397","terms_by_termid":{"GO:0032121":null,"GO:0034398":null,"GO:0044820":null,"GO:0044821":null,"GO:0045141":null,"GO:0070197":null,"GO:0120110":null,"GO:1904537":null}}


id: FYPO:0000939
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to the mitotic spindle pole body is abnormal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal protein localization to spindle pole body","termid":"FYPO:0002769"},{"relation_name":"is_a","term_name":"abnormal protein localization to microtubule organizing center","termid":"FYPO:0005702"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0005447","FYPO:0001320","FYPO:0000138","FYPO:0001985"],"is_obsolete":false,"name":"abnormal protein localization to mitotic spindle pole body","synonyms":[{"name":"abnormal protein localisation to mitotic spindle pole body","type":"exact"},{"name":"abnormal protein localization to mitotic SPB","type":"exact"},{"name":"abnormal protein localization to spindle pole body during mitotic cell cycle","type":"related"},{"name":"abnormal protein localization to spindle pole body during vegetative growth","type":"exact"}],"termid":"FYPO:0000939"}


id: PBO:0076310
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"synaptojanin 2","termid":"PBO:0076310"}


id: PBO:0005759
data:
  {"annotation_feature_type":"gene","cv_name":"disease_associated","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"bucentaur or craniofacial development","termid":"PBO:0005759"}


id: MOD:00091
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-arginine residue to L-arginine amide.","definition_xrefs":["RESID:AA0082","PubMed:2229025","ChEBI:145897","PubMed:2753890","PubMed:743209"],"direct_ancestors":[{"relation_name":"is_a","term_name":"C1-amidated residue","termid":"MOD:00883"},{"relation_name":"is_a","term_name":"modified L-arginine residue","termid":"MOD:00902"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"L-arginine amide","synonyms":[{"name":"(2S)-2-amino-5-[(diaminomethylidene)amino]pentanamide","type":"exact"},{"name":"2-amino-5-carbamimidamidopentanamide","type":"exact"},{"name":"2-amino-5-guanidinopentanamide","type":"exact"},{"name":"ArgN","type":"exact"},{"name":"L-arginine amide","type":"exact"},{"name":"MOD_RES Arginine amide","type":"exact"},{"name":"amidated L-arginine","type":"exact"},{"name":"argininamide","type":"exact"}],"termid":"MOD:00091"}


id: PBO:0029494
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_duration_of_meiotic_anaphase_II","termid":"PBO:0029494"}


id: PBO:0058065
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 4284","termid":"PBO:0058065"}


id: GO:0106154
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process of producing flask-shaped fruiting bodies, called perithecia. In the ascomycetous fungi such as Neurospora crassa and Sordaria macrospora, these perithecia are formed in the sexual phase and they discharge ascospores through the ostiolum at the tip of the perithecial neck.","definition_xrefs":["DOI:10.1007/978-3-642-00286-1_2","GOC:ach","PMID:25311923","PMID:21134480","PMID:19547974"],"direct_ancestors":[{"relation_name":"is_a","term_name":"perithecium development","termid":"GO:0120165"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"perithecium formation","termid":"GO:0106154"}


id: PBO:0091930
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"non-coding RNA, LTR-proximal","termid":"PBO:0091930"}


id: PBO:0084241
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Inhibitor of the Anaphase-Promoting Complex/Cyclosome (APC/C); binds to APC/C and inhibits the activity of both APC/C(Cdc20) and APC/C(Cdh1); inhibits the binding of Cdc20 and Cdh1 to APC/C; overexpression results in increased sensitivity to microtubule poison; originally identified by gene-trapping, microarray-based expression analysis, and genome-wide homology searching; functional homolog of human MAD2L1BP (p31comet)","termid":"PBO:0084241"}


id: GO:0102131
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: NADP + a 3R-hydroxyglutaryl-[acp] methyl ester = NADPH + H+ + a 3-oxo-glutaryl-[acp] methyl ester.","definition_xrefs":["GOC:pz"],"gene_count":0,"genotype_count":0,"name":"obsolete 3-oxo-glutaryl-[acp] methyl ester reductase activity (obsolete GO:0102131)","termid":"GO:0102131"}


id: PBO:0066974
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RN7SK pseudogene 277","termid":"PBO:0066974"}


id: GO:0060903
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that increases the rate, frequency, or extent of meiosis I, a cell cycle process comprising the steps by which a cell progresses through the first phase of meiosis, in which cells divide and homologous chromosomes are paired and segregated from each other, producing two daughter cells.","definition_xrefs":["GOC:dph","GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of meiotic nuclear division","termid":"GO:0045836"},{"relation_name":"is_a","term_name":"regulation of meiosis I","termid":"GO:0060631"},{"relation_name":"positively_regulates","term_name":"meiosis I","termid":"GO:0007127"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0007049"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"positively_regulates","termid":"GO:0140013"},{"rel_name":"regulates","termid":"GO:0140013"},{"rel_name":"positively_regulates","termid":"GO:0007049"}],"interesting_parent_ids":["GO:0140013","GO:0007049","GO:0008150"],"is_obsolete":false,"name":"positive regulation of meiosis I","termid":"GO:0060903"}


id: FYPO:0002263
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A phenotype in which a spore germinates to produce a cell that enters the cell cycle but then becomes elongated and undergoes cell cycle arrest, and eventually dies without completing cell division.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"inviable after spore germination, without cell division, cell cycle arrest","termid":"FYPO:0001924"},{"relation_name":"is_a","term_name":"inviable after spore germination, without cell division, elongated cell","termid":"FYPO:0004603"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"has_part","termid":"FYPO:0000004"},{"rel_name":"is_a","termid":"FYPO:0000631"},{"rel_name":"has_part","termid":"FYPO:0000631"},{"rel_name":"has_part","termid":"FYPO:0005447"},{"rel_name":"has_part","termid":"FYPO:0001320"},{"rel_name":"has_part","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"has_part","termid":"FYPO:0000005"},{"rel_name":"is_a","termid":"FYPO:0000004"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000005"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000002","FYPO:0005447","FYPO:0000004","FYPO:0000631","FYPO:0001320","FYPO:0000005"],"is_obsolete":false,"name":"inviable after spore germination, without cell division, cell cycle arrest, elongated cell","synonyms":[{"name":"inviable germinated spore, without cell division, cell cycle arrest, elongated cell","type":"exact"},{"name":"lethal after spore germination, without cell division, cell cycle arrest, elongated cell","type":"exact"}],"termid":"FYPO:0002263"}


id: PBO:0078270
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-Cys (anticodon GCA) 6-1","termid":"PBO:0078270"}


id: FYPO:0006201
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A regulation phenotype observed in the vegetative growth phase of the life cycle in which regulation of an adenine biosynthetic process is abnormal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation phenotype during vegetative growth","termid":"FYPO:0001334"},{"relation_name":"is_a","term_name":"abnormal cellular process during vegetative growth","termid":"FYPO:0001362"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0000002","FYPO:0001985","FYPO:0001320"],"is_obsolete":false,"name":"abnormal regulation of adenine biosynthetic process","synonyms":[{"name":"abnormal regulation of adenine anabolism","type":"exact"},{"name":"abnormal regulation of adenine biosynthesis","type":"exact"},{"name":"abnormal regulation of adenine biosynthetic process during mitotic cell cycle","type":"related"},{"name":"abnormal regulation of adenine biosynthetic process during vegetative growth","type":"exact"},{"name":"abnormal regulation of adenine formation","type":"exact"},{"name":"abnormal regulation of adenine synthesis","type":"exact"}],"termid":"FYPO:0006201"}


id: PBO:0017096
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"serine/threonine protein kinase Nnk1 (predicted)","termid":"PBO:0017096"}


id: PBO:0086050
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein of unknown function reputedly involved in spore wall assembly","termid":"PBO:0086050"}


id: PBO:0041630
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"calcium voltage-gated channel subunit alpha1 C","termid":"PBO:0041630"}


id: GO:0005140
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to an interleukin-9 receptor.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cytokine receptor binding","termid":"GO:0005126"},{"relation_name":"is_a","term_name":"growth factor receptor binding","termid":"GO:0070851"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005515"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005488"}],"interesting_parent_ids":["GO:0003674","GO:0005515","GO:0005488"],"is_obsolete":false,"name":"interleukin-9 receptor binding","synonyms":[{"name":"IL-9","type":"narrow"},{"name":"interleukin-9 receptor ligand","type":"narrow"}],"termid":"GO:0005140"}


id: FYPO:0000316
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A viability phenotype in which a spore germinates but fails to produce dividing cells that can survive under normal conditions.","definition_xrefs":["PomBase:mah","PomBase:jh"],"direct_ancestors":[{"relation_name":"is_a","term_name":"inviable vegetative cell","termid":"FYPO:0001489"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000004"}],"interesting_parent_ids":["FYPO:0000004","FYPO:0001320","FYPO:0000002"],"is_obsolete":false,"name":"inviable after spore germination","synonyms":[{"name":"inviable germinated spore","type":"exact"},{"name":"inviable germinating spore","type":"related"},{"name":"lethal after spore germination","type":"exact"}],"termid":"FYPO:0000316"}


id: GO:0097607
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that decreases the frequency, rate or extent of the passage or uptake of molecules by the nuclear envelope.","definition_xrefs":["GOC:pr"],"gene_count":0,"genotype_count":0,"name":"obsolete negative regulation of nuclear envelope permeability (obsolete GO:0097607)","synonyms":[{"name":"negative regulation of nuclear membrane permeability","type":"related"}],"termid":"GO:0097607"}


id: PBO:0047218
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"family with sequence similarity 224 member B","termid":"PBO:0047218"}


id: GO:0035823
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A gene conversion process in which a segment of about 50-200 base pairs is transferred from the donor to the acceptor.","definition_xrefs":["GOC:mah","PMID:16954385"],"direct_ancestors":[{"relation_name":"is_a","term_name":"gene conversion","termid":"GO:0035822"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006310"},{"rel_name":"is_a","termid":"GO:0006259"}],"interesting_parent_ids":["GO:0006310","GO:0006259","GO:0008150"],"is_obsolete":false,"name":"short tract gene conversion","termid":"GO:0035823"}


id: GO:0071152
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A protein complex formed by the association of the guanine nucleotide exchange factor synembrin with the alpha(q) subunit of a heterotrimeric G protein.","definition_xrefs":["GOC:mah","PMID:12509430"],"direct_ancestors":[{"relation_name":"is_a","term_name":"intracellular protein-containing complex","termid":"GO:0140535"},{"relation_name":"part_of","term_name":"intracellular anatomical structure","termid":"GO:0005622"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0032991","GO:0005575"],"is_obsolete":false,"name":"G-protein alpha(q)-synembrin complex","synonyms":[{"name":"Ric-8A G(q) alpha subunit complex","type":"narrow"}],"termid":"GO:0071152"}


id: PBO:0024857
data:
  {"annotation_feature_type":"gene","cv_name":"misc","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MCM4/6/7 helicase complex binds a 3' overhang and translocates along single-stranded DNA in the 3' to 5' direction","termid":"PBO:0024857"}


id: PBO:0069837
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 1123, pseudogene","termid":"PBO:0069837"}


id: PBO:0070031
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 1328, pseudogene","termid":"PBO:0070031"}


id: FYECO:0000143
data:
  {"annotation_feature_type":"gene","cv_name":"fission_yeast_phenotype_condition","definition":"An experimental condition in which antimycin A was added to the medium or assay buffer in excess compared to standard medium or assay buffers.","definition_xrefs":["PomBase:al"],"direct_ancestors":[{"relation_name":"is_a","term_name":"grouping excess","termid":"FYECO:0000109"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"+ antimycin A","synonyms":[{"name":"respiratory chain inhibitor","type":"related"}],"termid":"FYECO:0000143"}


id: PBO:0047128
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"family with sequence similarity 169 member B, pseudogene","termid":"PBO:0047128"}


id: PATO:0000391
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0000391 intense (obsolete PATO:0000391)","termid":"PATO:0000391"}


id: GO:0052203
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The process in which an organism effects a change in enzyme activity in a second organism, where the two organisms are in a symbiotic interaction.","definition_xrefs":["GOC:tb","GOC:mtg_pamgo_17jul06"],"gene_count":0,"genotype_count":0,"name":"obsolete modulation of catalytic activity in other organism involved in symbiotic interaction (obsolete GO:0052203)","synonyms":[{"name":"modulation of enzyme activity within other organism during symbiotic interaction","type":"exact"}],"termid":"GO:0052203"}


id: GO:0061060
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that decreases the rate, frequency, or extent of the peptidoglycan recognition protein signaling pathway.","definition_xrefs":["GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of immune system process","termid":"GO:0002683"},{"relation_name":"is_a","term_name":"negative regulation of signal transduction","termid":"GO:0009968"},{"relation_name":"is_a","term_name":"regulation of peptidoglycan recognition protein signaling pathway","termid":"GO:0061058"},{"relation_name":"is_a","term_name":"negative regulation of defense response to bacterium","termid":"GO:1900425"},{"relation_name":"negatively_regulates","term_name":"peptidoglycan recognition protein signaling pathway","termid":"GO:0061057"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0023052"},{"rel_name":"negatively_regulates","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"negative regulation of peptidoglycan recognition protein signaling pathway","synonyms":[{"name":"negative regulation of peptidoglycan recognition protein signalling pathway","type":"exact"}],"termid":"GO:0061060"}


id: PBO:0082175
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ADP-ribosylation factor; GTPase of the Ras superfamily involved in regulation of coated vesicle formation in intracellular trafficking within the Golgi; involved in mitochondrial morphology; ARF1 has a paralog, ARF2, that arose from the whole genome duplication; arf1 arf2 double null mutation is complemented by human ARF1, ARF4, ARF5, or ARF6","termid":"PBO:0082175"}


id: PBO:0049634
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"H3 histone pseudogene 37","termid":"PBO:0049634"}


id: PBO:0044826
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"defensin beta 113","termid":"PBO:0044826"}


id: GO:0160138
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: uridine(2604) in 23S rRNA = pseudouridine(2604) in 23S rRNA.","definition_xrefs":["EC:5.4.99.21","RHEA:38875"],"direct_ancestors":[{"relation_name":"is_a","term_name":"rRNA pseudouridine synthase activity","termid":"GO:0120159"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016853"},{"rel_name":"is_a","termid":"GO:0140098"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0140098","GO:0003824","GO:0003674","GO:0016853"],"is_obsolete":false,"name":"23S rRNA pseudouridine(2604) synthase activity","termid":"GO:0160138"}


id: PBO:0071108
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L21 pseudogene 110","termid":"PBO:0071108"}


id: PBO:0053978
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1290","termid":"PBO:0053978"}


id: GO:0018944
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving tri-n-butyltin, an organometallic compound composed of three butyl chains attached to a tin atom. Tri-n-butyltin is used as an antifouling agent in ship bottom paints and can be toxic to many marine organisms.","definition_xrefs":["GOC:ai","UM-BBD_pathwayID:tbt"],"direct_ancestors":[{"relation_name":"is_a","term_name":"organotin metabolic process","termid":"GO:0018943"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"tri-n-butyltin metabolic process","synonyms":[{"name":"tri-n-butyltin metabolism","type":"exact"}],"termid":"GO:0018944"}


id: FYPO:0005549
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell population phenotype in which a normal proportion of cells in the population remains viable when cells in a culture are deprived of nitrogen.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal phenotype","termid":"FYPO:0000257"},{"relation_name":"is_a","term_name":"cell population viability","termid":"FYPO:0002057"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0000003"},{"rel_name":"is_a","termid":"FYPO:0002057"}],"interesting_parent_ids":["FYPO:0000003","FYPO:0000257","FYPO:0002057"],"is_obsolete":false,"name":"normal viability upon nitrogen starvation","synonyms":[{"name":"normal cell population viability upon nitrogen starvation","type":"exact"},{"name":"normal viability in stationary phase upon nitrogen depletion","type":"related"},{"name":"normal viability upon nitrogen depletion","type":"exact"},{"name":"normal viability upon nitrogen deprivation","type":"exact"}],"termid":"FYPO:0005549"}


id: PBO:0038537
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"abhydrolase domain containing 12B","termid":"PBO:0038537"}


id: PBO:0078934
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-Arg (anticodon CCT) 2-1","termid":"PBO:0078934"}


id: PBO:0003661
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"UBA/EH/EF hand domain protein Ucp8","termid":"PBO:0003661"}


id: GO:1901869
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of ecgonine methyl ester.","definition_xrefs":["PMID:22665766","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"tropane alkaloid biosynthetic process","termid":"GO:0009710"},{"relation_name":"is_a","term_name":"ecgonine methyl ester metabolic process","termid":"GO:1901867"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0019748"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0019748","GO:0008150"],"is_obsolete":false,"name":"ecgonine methyl ester biosynthetic process","synonyms":[{"name":"ecgonine methyl ester anabolism","type":"exact"},{"name":"ecgonine methyl ester biosynthesis","type":"exact"},{"name":"ecgonine methyl ester formation","type":"exact"},{"name":"ecgonine methyl ester synthesis","type":"exact"}],"termid":"GO:1901869"}


id: GO:0140799
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: glycine(out) + H+(in) = glycine(in) + H+(out).","definition_xrefs":["PMID:26912364","PMID:16701208"],"direct_ancestors":[{"relation_name":"is_a","term_name":"proton transmembrane transporter activity","termid":"GO:0015078"},{"relation_name":"is_a","term_name":"glycine transmembrane transporter activity","termid":"GO:0015187"},{"relation_name":"is_a","term_name":"amino acid:monoatomic cation antiporter activity","termid":"GO:0140848"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0022857","GO:0003674","GO:0005215"],"is_obsolete":false,"name":"glycine:proton antiporter activity","termid":"GO:0140799"}


id: MOD:01869
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"The protein modification reporter fragment produced by an Applied Biosystems mTRAQ light reagent derivatized residue.","definition_xrefs":["PubMed:18688235"],"direct_ancestors":[{"relation_name":"derives_from","term_name":"mTRAQ light reporter+balance reagent acylated residue","termid":"MOD:01864"},{"relation_name":"is_a","term_name":"mTRAQ reporter fragment","termid":"MOD:01870"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mTRAQ light reporter fragment","synonyms":[{"name":"4-methyl-1-methylidenepiperazin-1-ium","type":"exact"}],"termid":"MOD:01869"}


id: FYPO:0002710
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype in which nuclei formed by the second meiotic nuclear division do not contain detectable spindle pole bodies.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"spindle pole body absent from cell","termid":"FYPO:0002709"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001985"],"is_obsolete":false,"name":"spindle pole body absent from cell after meiosis II","synonyms":[{"name":"SPB absent from cell after meiosis II","type":"exact"},{"name":"absent spindle pole body after meiosis II","type":"exact"},{"name":"absent spindle pole body after second meiotic nuclear division","type":"exact"}],"termid":"FYPO:0002710"}


id: GO:0048848
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which the anatomical structures of the neurohypophysis are generated and organized. The neurohypophysis is the part of the pituitary gland that secretes hormones involved in blood pressure regulation.","definition_xrefs":["GOC:dgh","GOC:jid","GOC:cls","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"gland morphogenesis","termid":"GO:0022612"},{"relation_name":"part_of","term_name":"neurohypophysis development","termid":"GO:0021985"},{"relation_name":"part_of","term_name":"hypophysis morphogenesis","termid":"GO:0048850"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"neurohypophysis morphogenesis","synonyms":[{"name":"neurophysis morphogenesis","type":"exact"},{"name":"posterior pituitary gland morphogenesis","type":"exact"},{"name":"posterior pituitary morphogenesis","type":"exact"}],"termid":"GO:0048848"}


id: PBO:0084013
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Glycogen synthase; expression induced by glucose limitation, nitrogen starvation, heat shock, and stationary phase; activity regulated by cAMP-dependent, Snf1p and Pho85p kinases as well as by the Gac1p-Glc7p phosphatase; GSY2 has a paralog, GSY1, that arose from the whole genome duplication; relocalizes from cytoplasm to plasma membrane upon DNA replication stress","termid":"PBO:0084013"}


id: PBO:0069840
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 1126, pseudogene","termid":"PBO:0069840"}


id: FYPO:0005706
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which the duration of progression through anaphase B of mitosis is longer than normal. Anaphase B is the stage of mitosis in which the polar microtubules elongate and the two poles of the spindle move farther apart.","definition_xrefs":["PomBase:mah","GO:0000092"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased duration of mitotic anaphase","termid":"FYPO:0000618"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0000002","FYPO:0001985","FYPO:0000631","FYPO:0005447"],"is_obsolete":false,"name":"increased duration of mitotic anaphase B","synonyms":[{"name":"delayed mitotic anaphase B progression","type":"related"},{"name":"increased duration of anaphase B during mitotic cell cycle","type":"exact"},{"name":"increased duration of mitotic anaphase B during vegetative growth","type":"exact"},{"name":"increased duration of mitotic anaphase B progression","type":"exact"},{"name":"prolonged mitotic anaphase B","type":"exact"}],"termid":"FYPO:0005706"}


id: GO:0010747
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that increases the rate, frequency or extent of plasma membrane long-chain fatty acid transport. Plasma membrane long-chain fatty acid transport is the directed movement of long-chain fatty acids across the plasma membrane. A long-chain fatty acid has an aliphatic tail containing 13 to 22 carbons.","definition_xrefs":["GOC:BHF","GOC:dph","GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of long-chain fatty acid import across plasma membrane","termid":"GO:0010746"},{"relation_name":"is_a","term_name":"positive regulation of transmembrane transport","termid":"GO:0034764"},{"relation_name":"is_a","term_name":"positive regulation of long-chain fatty acid import into cell","termid":"GO:0140214"},{"relation_name":"positively_regulates","term_name":"long-chain fatty acid import across plasma membrane","termid":"GO:0015911"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"positively_regulates","termid":"GO:0006810"},{"rel_name":"positively_regulates","termid":"GO:0055085"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0055085"}],"interesting_parent_ids":["GO:0055085","GO:0008150","GO:0006810"],"is_obsolete":false,"name":"positive regulation of long-chain fatty acid import across plasma membrane","synonyms":[{"name":"positive regulation of plasma membrane long-chain fatty acid transport","type":"exact"}],"termid":"GO:0010747"}


id: PBO:0043979
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cold shock domain containing C2","termid":"PBO:0043979"}


id: PBO:0053840
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1106","termid":"PBO:0053840"}


id: PBO:0040605
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"BAGE family member 3","termid":"PBO:0040605"}


id: PBO:0057129
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 212","termid":"PBO:0057129"}


id: PBO:0084848
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Mitochondrial ribosomal protein of the large subunit; homologous to bacterial L35 and human MRPL35 ribosomal proteins","termid":"PBO:0084848"}


id: SO:0000531
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"Genomic DNA of immunoglobulin/T-cell receptor gene in germline configuration including at least one V-gene, one D-gene and one J-gene and one C-gene.","direct_ancestors":[{"relation_name":"has_part","term_name":"D_gene_segment","termid":"SO:0000458"},{"relation_name":"has_part","term_name":"V_gene_segment","termid":"SO:0000466"},{"relation_name":"has_part","term_name":"J_gene_segment","termid":"SO:0000470"},{"relation_name":"has_part","term_name":"C_gene_segment","termid":"SO:0000478"},{"relation_name":"is_a","term_name":"vertebrate_immunoglobulin_T_cell_receptor_rearranged_gene_cluster","termid":"SO:0000938"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"V_D_J_C_cluster","synonyms":[{"name":"V D J C cluster","type":"exact"},{"name":"V-D-J-C-CLUSTER","type":"exact"}],"termid":"SO:0000531"}


id: PBO:0031013
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-elongated_nucleus","termid":"PBO:0031013"}


id: PBO:0049363
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"general transcription factor IIi pseudogene 22","termid":"PBO:0049363"}


id: MOD:01194
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"modification from Unimod Chemical derivative -","definition_xrefs":["PubMed:15279557","Unimod:264#S"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phosphorylation to pyridyl thiol","termid":"MOD:00586"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"phosphorylation to pyridyl thiol - site S","synonyms":[{"name":"PET","type":"related"},{"name":"phosphorylation to pyridyl thiol","type":"related"}],"termid":"MOD:01194"}


id: PBO:0059378
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial ribosomal protein S21 pseudogene 3","termid":"PBO:0059378"}


id: PBO:0043184
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cytokine inducible SH2 containing protein","termid":"PBO:0043184"}


id: GO:0018208
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The modification of peptidyl-proline.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"peptidyl-amino acid modification","termid":"GO:0018193"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"peptidyl-proline modification","termid":"GO:0018208"}


id: GO:0034777
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The volume enclosed by the membranes of a recycling endosome.","definition_xrefs":["GOC:rph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"endosome lumen","termid":"GO:0031904"},{"relation_name":"part_of","term_name":"recycling endosome","termid":"GO:0055037"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"part_of","termid":"GO:0031410"},{"rel_name":"part_of","termid":"GO:0005768"}],"interesting_parent_ids":["GO:0031410","GO:0005768","GO:0005575","GO:0005737"],"is_obsolete":false,"name":"recycling endosome lumen","termid":"GO:0034777"}


id: GO:0010369
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A region in which centric, heterochromatic portions from more than one chromosomes form a compact structure.","definition_xrefs":["PMID:15053486","PMID:12384572","PMID:16831888"],"direct_ancestors":[{"relation_name":"is_a","term_name":"intracellular non-membrane-bounded organelle","termid":"GO:0043232"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"chromocenter","termid":"GO:0010369"}


id: PR:O60164
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A pescadillo that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PANTHER:PTHR12221:SF6","PRO:DNx","OMA:SCHPO03820"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pescadillo homolog (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC19F5.05c","secondary_identifiers":["UniProtKB:O60164"],"synonyms":[{"name":"Spom972h-PES1","type":"exact"},{"name":"nucleolar protein 7 homolog (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:O60164"}


id: PBO:0110971
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"human CREG1 ortholog, probable oxidase, implicated in lipid metabolism, vitamin metabolism or lipoylation","termid":"PBO:0110971"}


id: GO:0033499
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of galactose, via the intermediate UDP-galactose.","definition_xrefs":["GOC:mah","MetaCyc:PWY-3821"],"direct_ancestors":[{"relation_name":"is_a","term_name":"galactose catabolic process","termid":"GO:0019388"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005975"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0044281","GO:0005975"],"is_obsolete":false,"name":"galactose catabolic process via UDP-galactose","secondary_identifiers":["MetaCyc:PWY-6317"],"synonyms":[{"name":"Leloir Pathway","type":"related"},{"name":"galactose breakdown via UDP-galactose","type":"exact"},{"name":"galactose catabolism via UDP-galactose","type":"exact"},{"name":"galactose degradation via UDP-galactose","type":"exact"}],"termid":"GO:0033499"}


id: GO:0006673
data:
  {"annotated_genes":["SJAG_04913","SJAG_04878","SJAG_05311","SJAG_03015","SJAG_00506","SJAG_03953","SJAG_02168"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[91321,93678],"is_not":false,"summary":null,"term":"GO:0006673"},{"annotations":[86937,91431,91915],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0051999"},{"annotations":[108719,87985],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006675"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways involving inositol phosphoceramides, any lipid with a phosphodiester bridge between an inositol residue and the ceramide group.","definition_xrefs":["PMID:19726565"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phospholipid metabolic process","termid":"GO:0006644"},{"relation_name":"is_a","term_name":"sphingolipid metabolic process","termid":"GO:0006665"}],"gene_count":7,"genes_by_uniquename":{"SJAG_00506":null,"SJAG_02168":null,"SJAG_03015":null,"SJAG_03953":null,"SJAG_04878":null,"SJAG_04913":null,"SJAG_05311":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006629"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006629","GO:0008150"],"is_obsolete":false,"name":"inositol phosphoceramide metabolic process","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["GO:0006674"],"synonyms":[{"name":"inositol phosphorylceramide metabolic process","type":"exact"},{"name":"inositol phosphorylceramide metabolism","type":"exact"},{"name":"inositolphosphoceramide metabolism","type":"exact"}],"termid":"GO:0006673","terms_by_termid":{"GO:0006673":null,"GO:0006675":null,"GO:0051999":null}}


id: GO:0043823
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: spheroidene + O2 = spheroidenone + H2O.","definition_xrefs":["PMID:16086104","PMID:16158287"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced iron-sulfur protein as one donor, and incorporation of one atom of oxygen","termid":"GO:0016713"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016491","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"spheroidene monooxygenase activity","secondary_identifiers":["MetaCyc:RXN-10670","EC:1.14.15.9","RHEA:33027"],"termid":"GO:0043823"}


id: PBO:0034365
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-trophically_interacts_with","termid":"PBO:0034365"}


id: GO:0009513
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A plastid arrested in the development of chloroplasts from proplastids due to absence of light or low light conditions.","definition_xrefs":["ISBN:0943088399"],"direct_ancestors":[{"relation_name":"is_a","term_name":"plastid","termid":"GO:0009536"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575","GO:0005737"],"is_obsolete":false,"name":"etioplast","secondary_identifiers":["Wikipedia:Etioplast"],"termid":"GO:0009513"}


id: GO:0046799
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The recruitment of the helicase-primase complex to viral DNA lesions during viral DNA repair.","definition_xrefs":["ISBN:0781718325"],"gene_count":0,"genotype_count":0,"name":"obsolete recruitment of helicase-primase complex to DNA lesions (obsolete GO:0046799)","termid":"GO:0046799"}


id: PBO:0029719
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_lariat_intron_level","termid":"PBO:0029719"}


id: PR:O13797
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPAC1142.02c gene.","definition_xrefs":["UniProtKB:O13797","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small glutamine-rich tetratricopeptide repeat-containing protein 2 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC1142.02c","synonyms":[{"name":"Spom972h-SPAC1142.02c","type":"exact"}],"termid":"PR:O13797"}


id: MOD:01903
data:
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id: PBO:0054142
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id: GO:0150073
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id: PBO:0081653
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id: GO:1901855
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id: PBO:0000327
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id: FYPO:0002525
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id: PBO:0005337
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id: PBO:0085477
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Probable membrane protein; possible role in proton symport of glycerol; member of the MBOAT family of putative membrane-bound O-acyltransferases; homolog of the mammalian Hedgehog pathway modulator HHAT; GUP2 has a paralog, GUP1, that arose from the whole genome duplication","termid":"PBO:0085477"}


id: GO:0098915
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which ions are transported across a membrane such that the ventricular cardiomyocyte membrane potential changes in the direction from the positive membrane potential at the peak of the action potential towards the negative resting potential.","definition_xrefs":["GOC:dph","GOC:BHF","GOC:mtg_cardiac_conduct_nov11","GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"membrane repolarization during cardiac muscle cell action potential","termid":"GO:0086013"},{"relation_name":"is_a","term_name":"ventricular cardiac muscle cell membrane repolarization","termid":"GO:0099625"},{"relation_name":"part_of","term_name":"ventricular cardiac muscle cell action potential","termid":"GO:0086005"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"membrane repolarization during ventricular cardiac muscle cell action potential","synonyms":[{"name":"ventricular repolarization","type":"related"},{"name":"electrocardiogram T wave","type":"related"},{"name":"regulation of ventricular cardiac muscle repolarization","type":"related"}],"termid":"GO:0098915"}


id: GO:0016580
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"OBSOLETE. A multiprotein complex that functions broadly in eukaryotic organisms as a transcriptional repressor of protein-coding genes, through the gene-specific deacetylation of histones. Amongst its subunits, the Sin3 complex contains Sin3-like proteins, and a number of core proteins that are shared with the NuRD complex (including histone deacetylases and histone binding proteins). The Sin3 complex does not directly bind DNA itself, but is targeted to specific genes through protein-protein interactions with DNA-binding proteins.","definition_xrefs":["PMID:11743021","PMID:10589671","PMID:12865422"],"gene_count":0,"genotype_count":0,"name":"obsolete Sin3 complex (obsolete GO:0016580)","termid":"GO:0016580"}


id: PATO:0000608
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A morphological quality inhering in a bearer by virtue of the bearer's affording blocked passage or view.","definition_xrefs":["answers.com:answers.com"],"direct_ancestors":[{"relation_name":"is_a","term_name":"closure","termid":"PATO:0000136"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"closed","synonyms":[{"name":"blocked","type":"related"}],"termid":"PATO:0000608"}


id: PBO:0088845
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cytochrome c oxidase subunit V","termid":"PBO:0088845"}


id: GO:0000709
data:
  {"annotated_genes":["SJAG_03221","SJAG_03751","SJAG_02708","SJAG_00623","SJAG_01708","SJAG_01044","SJAG_02267","SJAG_04950"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[84710,89058,93099,96708,97687,103847,106488,113249],"is_not":false,"summary":null,"term":"GO:0000709"}]},"cv_name":"biological_process","definition":"The conversion of the paired broken DNA and homologous duplex DNA into a four-stranded branched intermediate, known as a joint molecule, formed during meiotic recombination. These joint molecules contain Holliday junctions on either side of heteroduplex DNA.","definition_xrefs":["PMID:8521495","GOC:elh"],"direct_ancestors":[{"relation_name":"is_a","term_name":"meiotic cell cycle process","termid":"GO:1903046"},{"relation_name":"part_of","term_name":"reciprocal meiotic recombination","termid":"GO:0007131"}],"gene_count":8,"genes_by_uniquename":{"SJAG_00623":null,"SJAG_01044":null,"SJAG_01708":null,"SJAG_02267":null,"SJAG_02708":null,"SJAG_03221":null,"SJAG_03751":null,"SJAG_04950":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0140013"},{"rel_name":"part_of","termid":"GO:0006310"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0007049"},{"rel_name":"part_of","termid":"GO:0006259"}],"interesting_parent_ids":["GO:0008150","GO:0140013","GO:0006310","GO:0007049","GO:0006259"],"is_obsolete":false,"name":"meiotic joint molecule formation","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0000709","terms_by_termid":{"GO:0000709":null}}


id: GO:0004588
data:
  {"annotated_genes":["SJAG_00694"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[108098],"is_not":false,"summary":null,"term":"GO:0004588"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: orotidine 5'-phosphate + diphosphate = orotate + 5-phospho-alpha-D-ribose 1-diphosphate.","definition_xrefs":["EC:2.4.2.10"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pentosyltransferase activity","termid":"GO:0016763"}],"gene_count":1,"genes_by_uniquename":{"SJAG_00694":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0016757"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016757","GO:0003674","GO:0003824","GO:0016740"],"is_obsolete":false,"name":"orotate phosphoribosyltransferase activity","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["Reactome:R-HSA-73567","MetaCyc:OROPRIBTRANS-RXN","RHEA:10380"],"synonyms":[{"name":"OPRT activity","type":"related"},{"name":"OPRTase activity","type":"related"},{"name":"orotate phosphoribosyl pyrophosphate transferase activity","type":"related"},{"name":"orotic acid phosphoribosyltransferase activity","type":"related"},{"name":"orotidine 5'-monophosphate pyrophosphorylase activity","type":"related"},{"name":"orotidine monophosphate pyrophosphorylase activity","type":"related"},{"name":"orotidine phosphoribosyltransferase activity","type":"related"},{"name":"orotidine-5'-phosphate diphosphorylase activity","type":"related"},{"name":"orotidine-5'-phosphate pyrophosphorylase activity","type":"related"},{"name":"orotidine-5'-phosphate:diphosphate phospho-alpha-D-ribosyl-transferase activity","type":"related"},{"name":"orotidylate phosphoribosyltransferase activity","type":"related"},{"name":"orotidylate pyrophosphorylase activity","type":"related"},{"name":"orotidylic acid phosphorylase activity","type":"related"},{"name":"orotidylic acid pyrophosphorylase activity","type":"related"},{"name":"orotidylic phosphorylase activity","type":"related"},{"name":"orotidylic pyrophosphorylase activity","type":"related"}],"termid":"GO:0004588","terms_by_termid":{"GO:0004588":null}}


id: GO:0001606
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. (Was not defined before being made obsolete).","definition_xrefs":["GOC:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete GPR37/endothelin B-like receptor activity (obsolete GO:0001606)","synonyms":[{"name":"GPR37/endothelin B-like receptor activity","type":"exact"}],"termid":"GO:0001606"}


id: MOD:01092
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"modification from DeltaMass","definition_xrefs":["DeltaMass:0"],"direct_ancestors":[{"relation_name":"is_a","term_name":"DeltaMass","termid":"MOD:00947"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mesitylene-2-sulfonyl","synonyms":[{"name":"Mts","type":"exact"}],"termid":"MOD:01092"}


id: PBO:0044493
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cytochrome P450 family 51 subfamily A member 1 pseudogene 1","termid":"PBO:0044493"}


id: GO:0033642
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process in which an organism modulates a change in state or activity of a host cell or organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a gravitational stimulus. The host is defined as the larger of the organisms involved in a symbiotic interaction.","definition_xrefs":["GOC:pamgo_curators"],"gene_count":0,"genotype_count":0,"name":"obsolete modulation by symbiont of host response to gravitational stimulus (obsolete GO:0033642)","synonyms":[{"name":"response to gravitational stimulus","type":"broad"}],"termid":"GO:0033642"}


id: GO:1903284
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of glutathione peroxidase activity.","definition_xrefs":["GOC:bf","GOC:TermGenie","PMID:23507046","GO_REF:0000059","GOC:PARL"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of glutathione peroxidase activity","termid":"GO:1903282"},{"relation_name":"is_a","term_name":"positive regulation of peroxidase activity","termid":"GO:2000470"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of glutathione peroxidase activity","synonyms":[{"name":"enhancement of GPX activity","type":"exact"},{"name":"activation of GSH peroxidase activity","type":"narrow"},{"name":"activation of glutathione peroxidase activity","type":"narrow"},{"name":"activation of glutathione:hydrogen-peroxide oxidoreductase activity","type":"narrow"},{"name":"activation of non-selenium glutathione peroxidase activity","type":"narrow"},{"name":"activation of reduced glutathione peroxidase activity","type":"narrow"},{"name":"activation of selenium-glutathione peroxidase activity","type":"narrow"},{"name":"positive regulation of GSH peroxidase activity","type":"exact"},{"name":"positive regulation of glutathione:hydrogen-peroxide oxidoreductase activity","type":"exact"},{"name":"positive regulation of non-selenium glutathione peroxidase activity","type":"narrow"},{"name":"positive regulation of reduced glutathione peroxidase activity","type":"exact"},{"name":"positive regulation of selenium-glutathione peroxidase activity","type":"exact"},{"name":"up regulation of GSH peroxidase activity","type":"exact"},{"name":"up regulation of glutathione peroxidase activity","type":"exact"},{"name":"up regulation of glutathione:hydrogen-peroxide oxidoreductase activity","type":"exact"},{"name":"up regulation of non-selenium glutathione peroxidase activity","type":"narrow"},{"name":"up regulation of reduced glutathione peroxidase activity","type":"exact"},{"name":"up regulation of selenium-glutathione peroxidase activity","type":"exact"},{"name":"up-regulation of GSH peroxidase activity","type":"exact"},{"name":"up-regulation of glutathione peroxidase activity","type":"exact"},{"name":"up-regulation of glutathione:hydrogen-peroxide oxidoreductase activity","type":"exact"},{"name":"up-regulation of non-selenium glutathione peroxidase activity","type":"narrow"},{"name":"up-regulation of reduced glutathione peroxidase activity","type":"exact"},{"name":"up-regulation of selenium-glutathione peroxidase activity","type":"exact"},{"name":"upregulation of GSH peroxidase activity","type":"exact"},{"name":"upregulation of glutathione peroxidase activity","type":"exact"},{"name":"upregulation of glutathione:hydrogen-peroxide oxidoreductase activity","type":"exact"},{"name":"upregulation of non-selenium glutathione peroxidase activity","type":"narrow"},{"name":"upregulation of reduced glutathione peroxidase activity","type":"exact"},{"name":"upregulation of selenium-glutathione peroxidase activity","type":"exact"}],"termid":"GO:1903284"}


id: FYPO:0006732
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to transcribed regions of chromatin is normal (i.e. indistinguishable from wild type).","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal protein localization to chromatin during vegetative growth","termid":"FYPO:0001509"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001312"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0000257"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0000138","FYPO:0001320","FYPO:0000257","FYPO:0001312"],"is_obsolete":false,"name":"normal protein localization to chromatin distal to replication origin","synonyms":[{"name":"normal protein localisation to chromatin distal to replication origin","type":"exact"},{"name":"normal protein localization to chromatin distal to replication origin during mitotic cell cycle","type":"related"},{"name":"normal protein localization to chromatin distal to replication origin during vegetative growth","type":"exact"}],"termid":"FYPO:0006732"}


id: GO:0051552
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving flavones, a class of pigmented plant compounds based on 2-phenyl-4H-1-benzopyran-4-one (2-phenylchromone).","definition_xrefs":["PMID:18567791"],"direct_ancestors":[{"relation_name":"is_a","term_name":"flavonoid metabolic process","termid":"GO:0009812"},{"relation_name":"is_a","term_name":"pigment metabolic process","termid":"GO:0042440"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"flavone metabolic process","synonyms":[{"name":"2-phenyl-4H-1-benzopyran-4-one metabolic process","type":"narrow"},{"name":"2-phenyl-4H-1-benzopyran-4-one metabolism","type":"narrow"},{"name":"2-phenylchromone metabolic process","type":"narrow"},{"name":"2-phenylchromone metabolism","type":"narrow"},{"name":"flavone metabolism","type":"exact"}],"termid":"GO:0051552"}


id: PBO:0056527
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"melanocortin 4 receptor","termid":"PBO:0056527"}


id: PBO:0045727
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"E2F transcription factor 6 pseudogene 4","termid":"PBO:0045727"}


id: GO:0018191
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The octanoylation of peptidyl-serine to form peptidyl-O3-octanoyl-L-serine, typical of the protein ghrelin.","definition_xrefs":["PMID:10604470","RESID:AA0290"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein octanoylation","termid":"GO:0018190"},{"relation_name":"is_a","term_name":"peptidyl-serine modification","termid":"GO:0018209"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0042158"}],"interesting_parent_ids":["GO:0008150","GO:0042158"],"is_obsolete":false,"name":"peptidyl-serine octanoylation","termid":"GO:0018191"}


id: GO:0044544
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process which begins with venom being forced into an organism by the bite or sting of another organism, and ends with the activation of plasminogen into plasmin in the bitten organism. This process includes cleavage at an internal Arg-Val site to form an N-terminal A-chain and C-terminal B-chain held together by a disulfide bond, and can include further proteolytic cleavage events to remove the preactivation peptide.","definition_xrefs":["GOC:fj","GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"envenomation resulting in fibrinolysis in another organism","termid":"GO:0044484"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"envenomation resulting in plasminogen activation in another organism","synonyms":[{"name":"envenomation resulting in plasminogen activation in other organism","type":"exact"}],"termid":"GO:0044544"}


id: PBO:0073994
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"solute carrier family 25 member 3 pseudogene 1","termid":"PBO:0073994"}


id: PBO:0015695
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"eighteen interacting centromere protein Eic2","termid":"PBO:0015695"}


id: GO:0043463
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the breakdown of rhamnose, the hexose 6-deoxy-L-mannose.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of carbohydrate catabolic process","termid":"GO:0043470"},{"relation_name":"is_a","term_name":"regulation of small molecule metabolic process","termid":"GO:0062012"},{"relation_name":"regulates","term_name":"rhamnose catabolic process","termid":"GO:0019301"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0044281"},{"rel_name":"regulates","termid":"GO:0005975"}],"interesting_parent_ids":["GO:0008150","GO:0005975","GO:0044281"],"is_obsolete":false,"name":"regulation of rhamnose catabolic process","synonyms":[{"name":"regulation of rhamnose breakdown","type":"exact"},{"name":"regulation of rhamnose catabolism","type":"exact"},{"name":"regulation of rhamnose degradation","type":"exact"}],"termid":"GO:0043463"}


id: PBO:0039886
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ARHGAP42 pseudogene 3","termid":"PBO:0039886"}


id: GO:0036230
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The change in morphology and behavior of a granulocyte resulting from exposure to a cytokine, chemokine, cellular ligand, or soluble factor.","definition_xrefs":["GOC:nhn","CL:0000094"],"direct_ancestors":[{"relation_name":"is_a","term_name":"myeloid leukocyte activation","termid":"GO:0002274"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"granulocyte activation","termid":"GO:0036230"}


id: GO:0006973
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The accumulation of glycerol within a cell, for example by increased glycerol biosynthesis combined with decreased permeability of the cell membrane to glycerol, in response to the detection of a hyperosmotic environment.","definition_xrefs":["GOC:jl","PMID:11752666"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular homeostasis","termid":"GO:0019725"},{"relation_name":"part_of","term_name":"cellular hyperosmotic response","termid":"GO:0071474"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"intracellular accumulation of glycerol","termid":"GO:0006973"}


id: PBO:0062437
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 7 subfamily E member 101 pseudogene","termid":"PBO:0062437"}


id: PBO:0081514
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein 420","termid":"PBO:0081514"}


id: PBO:0076994
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"THAP domain containing 9","termid":"PBO:0076994"}


id: GO:0035989
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of a tendon over time, from its formation to the mature structure. A tendon is a fibrous, strong, connective tissue that connects muscle to bone or integument and is capable of withstanding tension. Tendons and muscles work together to exert a pulling force.","definition_xrefs":["GOC:yaf","UBERON:0000043","PMID:21412429"],"direct_ancestors":[{"relation_name":"is_a","term_name":"connective tissue development","termid":"GO:0061448"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"tendon development","synonyms":[{"name":"sinew development","type":"related"}],"termid":"GO:0035989"}


id: PBO:0088853
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"plasma membrane TRP-like calcium ion channel Trp1322","termid":"PBO:0088853"}


id: GO:0046273
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of lignans, any member of a class of plant metabolites related to lignins. Lignans are usually found as phenylpropanoid dimers in which the phenylpropanoid units are linked tail to tail and thus having a 2,3 dibenzylbutane skeleton, but higher oligomers can also exist.","definition_xrefs":["GOC:jl","PMID:10074466"],"direct_ancestors":[{"relation_name":"is_a","term_name":"lignan metabolic process","termid":"GO:0009806"},{"relation_name":"is_a","term_name":"phenylpropanoid catabolic process","termid":"GO:0046271"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0019748"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0019748","GO:0008150"],"is_obsolete":false,"name":"lignan catabolic process","synonyms":[{"name":"lignan breakdown","type":"exact"},{"name":"lignan catabolism","type":"exact"},{"name":"lignan degradation","type":"exact"}],"termid":"GO:0046273"}


id: GO:2001141
data:
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id: GO:0003750
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id: PBO:0091457
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id: PATO:0002295
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id: PBO:0085690
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id: FYECO:0000406
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id: FYPO:0004527
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id: PBO:0047938
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id: GO:0008104
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id: GO:0006665
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  {"annotated_genes":["SJAG_00506","SJAG_02842","SJAG_01300","SJAG_03953","SJAG_02488","SJAG_01057","SJAG_01219","SJAG_04178","SJAG_04550","SJAG_02168","SJAG_00261","SJAG_01857","SJAG_03076","SJAG_00176","SJAG_03015","SJAG_04878","SJAG_01356","SJAG_02590","SJAG_00880","SJAG_04913","SJAG_02085","SJAG_02305","SJAG_05311","SJAG_00519","SJAG_02885","SJAG_03690","SJAG_02706","SJAG_04986","SJAG_02429"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[97644],"is_not":false,"summary":null,"term":"GO:0006665"},{"annotations":[110949],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006666"},{"annotations":[88086,105000,105903,88966,106257,101708],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0046513"},{"annotations":[98325],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006672"},{"annotations":[93678,91321],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006673"},{"annotations":[91431,91915,86937],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0051999"},{"annotations":[108719,87985],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006675"},{"annotations":[105001,86039],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0046521"},{"annotations":[91322,88127,102050,105904,87986,108720,89736,96406,93679,110951,85710,113653,97579,98327,86801,105815],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0030148"},{"annotations":[101709,102154,93083,93839,105905,88967],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0046512"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways involving sphingolipids, any of a class of lipids containing the long-chain amine diol sphingosine or a closely related base (a sphingoid).","definition_xrefs":["GOC:mah","ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"membrane lipid metabolic process","termid":"GO:0006643"},{"relation_name":"is_a","term_name":"organonitrogen compound metabolic process","termid":"GO:1901564"}],"gene_count":29,"genes_by_uniquename":{"SJAG_00176":null,"SJAG_00261":null,"SJAG_00506":null,"SJAG_00519":null,"SJAG_00880":null,"SJAG_01057":null,"SJAG_01219":null,"SJAG_01300":null,"SJAG_01356":null,"SJAG_01857":null,"SJAG_02085":null,"SJAG_02168":null,"SJAG_02305":null,"SJAG_02429":null,"SJAG_02488":null,"SJAG_02590":null,"SJAG_02706":null,"SJAG_02842":null,"SJAG_02885":null,"SJAG_03015":null,"SJAG_03076":null,"SJAG_03690":null,"SJAG_03953":null,"SJAG_04178":null,"SJAG_04550":null,"SJAG_04878":null,"SJAG_04913":null,"SJAG_04986":null,"SJAG_05311":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006629"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006629","GO:0008150"],"is_obsolete":false,"name":"sphingolipid metabolic process","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"sphingolipid metabolism","type":"exact"}],"termid":"GO:0006665","terms_by_termid":{"GO:0006665":null,"GO:0006666":null,"GO:0006672":null,"GO:0006673":null,"GO:0006675":null,"GO:0030148":null,"GO:0046512":null,"GO:0046513":null,"GO:0046521":null,"GO:0051999":null}}


id: GO:0008328
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A multimeric assembly of four or five subunits which form a structure with an extracellular N-terminus and a large loop that together form the ligand binding domain. The C-terminus is intracellular. The ionotropic glutamate receptor complex itself acts as a ligand-gated ion channel; on binding glutamate, charged ions pass through a channel in the center of the receptor complex.","direct_ancestors":[{"relation_name":"is_a","term_name":"monoatomic ion channel complex","termid":"GO:0034702"},{"relation_name":"is_a","term_name":"neurotransmitter receptor complex","termid":"GO:0098878"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0005886"}],"interesting_parent_ids":["GO:0005575","GO:0032991","GO:0005886"],"is_obsolete":false,"name":"ionotropic glutamate receptor complex","termid":"GO:0008328"}


id: GO:0000378
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The RNA metabolic process that joins two exons, each of which has free ends that were generated by endonucleolytic cleavages, by a ligation reaction.","definition_xrefs":["GOC:krc","ISBN:0879695897"],"direct_ancestors":[{"relation_name":"is_a","term_name":"RNA metabolic process","termid":"GO:0016070"},{"relation_name":"part_of","term_name":"RNA splicing, via endonucleolytic cleavage and ligation","termid":"GO:0000394"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0010467"],"is_obsolete":false,"name":"RNA exon ligation","termid":"GO:0000378"}


id: FYECO:0000059
data:
  {"annotation_feature_type":"gene","cv_name":"fission_yeast_phenotype_condition","definition":"Any experimental condition that specifies one or more chemical(s) that are added to, or excluded from, growth medium, assay buffer, etc.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"fission yeast phenotype condition","termid":"FYECO:0000001"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chemical added or excluded","secondary_identifiers":["FYECO:0000019","FYECO:0000020","FYECO:0000017"],"synonyms":[{"name":"chemical added","type":"related"},{"name":"chemicals","type":"related"}],"termid":"FYECO:0000059"}


id: PBO:0085059
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Non-essential small GTPase; member of the Rho/Rac subfamily of Ras-like proteins; likely to be involved in the establishment of cell polarity; has long N-terminal extension that plays an important role in Rho4p function and is shared with Rho4 homologs in other yeasts and filamentous fungi","termid":"PBO:0085059"}


id: PR:Q9Y7T3
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A tRNA(His) guanylyltransferase that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO04473","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA(His) guanylyltransferase (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC63.07","secondary_identifiers":["UniProtKB:Q9Y7T3"],"synonyms":[{"name":"Spom972h-THG1L","type":"exact"},{"name":"tRNA-histidine guanylyltransferase (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:Q9Y7T3"}


id: PBO:0078440
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-Gly (anticodon TCC) 6-1","termid":"PBO:0078440"}


id: PBO:0050239
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"high mobility group nucleosomal binding domain 2 pseudogene 17","termid":"PBO:0050239"}


id: PBO:0050103
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"high mobility group box 1 pseudogene 13","termid":"PBO:0050103"}


id: FYPO:0004405
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A phenotype observed in the vegetative growth phase of the life cycle in which cells show increased sensitivity to JM335. Cells stop growing (and may die) at a concentration of JM335 that allows wild type cells to grow.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased sensitivity to chemical during vegetative growth","termid":"FYPO:0000127"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000139"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0002683"},{"rel_name":"is_a","termid":"FYPO:0000003"}],"interesting_parent_ids":["FYPO:0000003","FYPO:0005447","FYPO:0001985","FYPO:0000139","FYPO:0002683"],"is_obsolete":false,"name":"sensitive to JM335","synonyms":[{"name":"hypersensitive to JM335","type":"exact"},{"name":"sensitive to JM335 during mitotic cell cycle","type":"related"},{"name":"sensitive to JM335 during vegetative growth","type":"exact"}],"termid":"FYPO:0004405"}


id: PBO:0017950
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosome biogenesis protein Yar1 (predicted)","termid":"PBO:0017950"}


id: GO:0085014
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Entry into a dormant state of the symbiont within the host organism.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"dormancy process","termid":"GO:0022611"},{"relation_name":"is_a","term_name":"development of symbiont in host","termid":"GO:0044114"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"dormancy entry of symbiont in host","termid":"GO:0085014"}


id: GO:0000229
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"OBSOLETE. A chromosome found in the cytoplasm.","definition_xrefs":["GOC:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete cytoplasmic chromosome (obsolete GO:0000229)","synonyms":[{"name":"cytoplasmic interphase chromosome","type":"narrow"}],"termid":"GO:0000229"}


id: FYPO:0007558
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A phenotype in which vegetative cell population growth is normal (i.e. indistinguishable from wild type) in a medium containing econazole.","definition_xrefs":["PMID:33223513","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal vegetative cell population growth","termid":"FYPO:0001357"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000003"},{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0002057"},{"rel_name":"is_a","termid":"FYPO:0002058"},{"rel_name":"is_a","termid":"FYPO:0002060"},{"rel_name":"is_a","termid":"FYPO:0000139"}],"interesting_parent_ids":["FYPO:0000257","FYPO:0000003","FYPO:0002057","FYPO:0002058","FYPO:0000139","FYPO:0002060"],"is_obsolete":false,"name":"normal growth on econazole","synonyms":[{"name":"normal cell population growth in presence of econazole","type":"exact"},{"name":"normal cell population growth on ECZ","type":"exact"},{"name":"normal cell population growth on econazole","type":"exact"},{"name":"normal cellular response to econazole","type":"related"},{"name":"normal vegetative cell population growth on econazole","type":"exact"}],"termid":"FYPO:0007558"}


id: PBO:0046518
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ER lipid raft associated 2","termid":"PBO:0046518"}


id: PBO:0055510
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2944","termid":"PBO:0055510"}


id: GO:0072702
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a methyl methanesulfonate (MMS) stimulus.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to organic substance","termid":"GO:0010033"},{"relation_name":"is_a","term_name":"response to oxygen-containing compound","termid":"GO:1901700"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"response to methyl methanesulfonate","synonyms":[{"name":"response to MMS","type":"exact"}],"termid":"GO:0072702"}


id: PBO:0001573
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pleckstrin homology domain protein","termid":"PBO:0001573"}


id: PBO:0066502
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ring finger and WD repeat domain 3","termid":"PBO:0066502"}


id: PBO:0056125
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"LysM domain containing 2","termid":"PBO:0056125"}


id: GO:0098026
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The internal tube of the contractile tails of some viruses. The virus tail tube is the channel for DNA ejection into the host cytoplasm.","definition_xrefs":["VZ:3960","GOC:bm"],"direct_ancestors":[{"relation_name":"is_a","term_name":"virion component","termid":"GO:0044423"},{"relation_name":"part_of","term_name":"virus tail","termid":"GO:0098015"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"virus tail, tube","synonyms":[{"name":"bacteriophage tail tube","type":"narrow"}],"termid":"GO:0098026"}


id: GO:1901339
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of store-operated calcium channel activity.","definition_xrefs":["GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of calcium ion transmembrane transporter activity","termid":"GO:1901019"},{"relation_name":"is_a","term_name":"regulation of cation channel activity","termid":"GO:2001257"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0055085"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0055085","GO:0008150","GO:0006810"],"is_obsolete":false,"name":"regulation of store-operated calcium channel activity","termid":"GO:1901339"}


id: GO:0005895
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A protein complex that binds interleukin-3; comprises an alpha and a beta subunit. The alpha chain is specific to the interleukin-5 receptor, whereas the beta chain is shared with the receptors for granulocyte-macrophage colony-stimulating factor and interleukin-3.","definition_xrefs":["GOC:mah","PMID:11839579","PMID:11312115"],"direct_ancestors":[{"relation_name":"is_a","term_name":"plasma membrane signaling receptor complex","termid":"GO:0098802"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0005886"}],"interesting_parent_ids":["GO:0005575","GO:0032991","GO:0005886"],"is_obsolete":false,"name":"interleukin-5 receptor complex","synonyms":[{"name":"IL-5 receptor complex","type":"exact"}],"termid":"GO:0005895"}


id: PBO:0003294
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NatC N-acetyltransferase non catalytic Sm-like domain subunit Naa38 (predicted)","termid":"PBO:0003294"}


id: GO:0007017
data:
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id: PBO:0042386
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id: GO:0039699
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id: PBO:0044510
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id: GO:0048771
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id: GO:0016460
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id: PBO:0088339
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id: PBO:0067837
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id: PBO:0072894
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id: PBO:0048573
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id: PBO:0090134
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id: PBO:0046780
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id: PBO:0065264
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id: PBO:0065578
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id: PATO:0000213
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id: PATO:0001372
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id: PBO:0070139
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id: PBO:0082193
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id: PBO:0078746
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id: PBO:0043510
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id: PBO:0003094
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id: GO:0060084
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id: GO:0098644
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A complex of collagen trimers such as a fibril or collagen network.","definition_xrefs":["GOC:dos"],"direct_ancestors":[{"relation_name":"is_a","term_name":"supramolecular complex","termid":"GO:0099080"},{"relation_name":"part_of","term_name":"collagen-containing extracellular matrix","termid":"GO:0062023"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"complex of collagen trimers","synonyms":[{"name":"Supramolecular aggregate of collagen","type":"exact"},{"name":"Supramolecular collagen assembly","type":"exact"}],"termid":"GO:0098644"}


id: PBO:0078578
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tripartite motif containing 53A, pseudogene","termid":"PBO:0078578"}


id: PBO:0053943
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1246","termid":"PBO:0053943"}


id: PBO:0040882
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"bone morphogenetic protein 6 pseudogene 1","termid":"PBO:0040882"}


id: PBO:0065325
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"serine protease 48","termid":"PBO:0065325"}


id: PBO:0029756
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_protein_modification","termid":"PBO:0029756"}


id: PBO:0042375
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CD200R1L antisense RNA 1","termid":"PBO:0042375"}


id: MOD:02059
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that contains an L-valine residue crosslinked to one or more amino acid residues.","definition_xrefs":["PubMed:18688235"],"direct_ancestors":[{"relation_name":"is_a","term_name":"modified L-valine residue","termid":"MOD:00920"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"crosslinked L-valine residue","synonyms":[{"name":"XlnkVal","type":"exact"}],"termid":"MOD:02059"}


id: GO:1901329
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of odontoblast differentiation.","definition_xrefs":["GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of epithelial cell differentiation","termid":"GO:0030856"},{"relation_name":"regulates","term_name":"odontoblast differentiation","termid":"GO:0071895"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of odontoblast differentiation","termid":"GO:1901329"}


id: PBO:0030789
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-swollen_spherical_vegetative_cell","termid":"PBO:0030789"}


id: GO:0150110
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that stops, prevents or reduces the frequency, rate or extent of cholesterol esterification.","definition_xrefs":["PMID:24201375","PMID:21810484","GOC:bc","GOC:aruk"],"gene_count":0,"genotype_count":0,"name":"obsolete negative regulation of cholesterol esterification (obsolete GO:0150110)","termid":"GO:0150110"}


id: PBO:0088143
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Vacuolar serine-type carboxypeptidase; involved, along with functional homolog Prc1p, in vacuolar zymogen activation, breakdown of the autophagic body, and autophagosome-dependent protein synthesis; role in phytochelatin synthesis; localizes to the vacuole lumen; expression induced by nitrogen limitation in a GLN3, GAT1-independent manner; N-glycosylated","termid":"PBO:0088143"}


id: PBO:0071623
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L36a pseudogene 41","termid":"PBO:0071623"}


id: PBO:0090746
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"U3 snoRNP-associated protein Esf2","termid":"PBO:0090746"}


id: GO:1901794
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of 3-(3-hydroxyphenyl)propanoate.","definition_xrefs":["MetaCyc:PWY0-1277","GOC:yaf","GOC:TermGenie","PMID:10537203","UniPathway:UPA00835"],"direct_ancestors":[{"relation_name":"is_a","term_name":"monocarboxylic acid catabolic process","termid":"GO:0072329"},{"relation_name":"is_a","term_name":"3-(3-hydroxyphenyl)propanoate metabolic process","termid":"GO:1901793"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0044248"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0044281","GO:0044248"],"is_obsolete":false,"name":"3-(3-hydroxyphenyl)propanoate catabolic process","synonyms":[{"name":"3-(3-hydroxyphenyl)propanoate breakdown","type":"exact"},{"name":"3-(3-hydroxyphenyl)propanoate catabolism","type":"exact"},{"name":"3-(3-hydroxyphenyl)propanoate degradation","type":"exact"}],"termid":"GO:1901794"}


id: PBO:0067379
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 481, pseudogene","termid":"PBO:0067379"}


id: PBO:0046145
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"eukaryotic translation initiation factor 6","termid":"PBO:0046145"}


id: PBO:0064515
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA polymerase II subunit K pseudogene 2","termid":"PBO:0064515"}


id: PBO:0043428
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cyclic nucleotide gated channel subunit beta 3","termid":"PBO:0043428"}


id: PBO:0036382
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cell surface glycoprotein, flocculin Pfl3, DIPSY family","termid":"PBO:0036382"}


id: PBO:0050534
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"15-hydroxyprostaglandin dehydrogenase","termid":"PBO:0050534"}


id: GO:0106358
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: NADP+ + sn-glycerol 1-phosphate = dihydroxyacetone phosphate + H+ + NADPH.","definition_xrefs":["RHEA:21416"],"direct_ancestors":[{"relation_name":"is_a","term_name":"glycerol-1-phosphate dehydrogenase [NAD(P)+] activity","termid":"GO:0050492"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016491"],"is_obsolete":false,"name":"glycerol-1-phosphate dehydrogenase [NADP+] activity","termid":"GO:0106358"}


id: PBO:0029142
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-sensitive_to_torin1","termid":"PBO:0029142"}


id: PBO:0043677
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"coronin 2A","termid":"PBO:0043677"}


id: FYECO:0000028
data:
  {"annotation_feature_type":"gene","cv_name":"fission_yeast_phenotype_condition","definition":"An experimental condition in which TBC was added to the medium or assay buffer in excess compared to standard medium or assay buffers.","definition_xrefs":["PomBase:al"],"gene_count":0,"genotype_count":0,"name":"OBSOLETE FYECO:0000028 + TBC (obsolete FYECO:0000028)","termid":"FYECO:0000028"}


id: PBO:0090953
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ER sphingosine hydroxylase Scs7","termid":"PBO:0090953"}


id: GO:0070430
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate, or extent of the nucleotide-binding oligomerization domain containing 1 (NOD1) pathway.","definition_xrefs":["GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of nucleotide-binding domain, leucine rich repeat containing receptor signaling pathway","termid":"GO:0070426"},{"relation_name":"is_a","term_name":"regulation of nucleotide-binding oligomerization domain containing 1 signaling pathway","termid":"GO:0070428"},{"relation_name":"positively_regulates","term_name":"nucleotide-binding oligomerization domain containing 1 signaling pathway","termid":"GO:0070427"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"positively_regulates","termid":"GO:0023052"},{"rel_name":"regulates","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"positive regulation of nucleotide-binding oligomerization domain containing 1 signaling pathway","synonyms":[{"name":"positive regulation of NOD1 signaling pathway","type":"exact"},{"name":"positive regulation of nucleotide-binding oligomerization domain containing 1 signalling pathway","type":"exact"}],"termid":"GO:0070430"}


id: FYPO:0002370
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which acetylation of lysine at position 56 of histone H3 in regions of the genome that are actively transcribed occurs to a greater extent than normal.","definition_xrefs":["PomBase:mah","PMID:23851719"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased histone H3 acetylation during vegetative growth","termid":"FYPO:0002363"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0002274"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0002494"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0001985","FYPO:0002274","FYPO:0001320","FYPO:0002494","FYPO:0000002"],"is_obsolete":false,"name":"increased histone H3-K56 acetylation in transcribed regions during vegetative growth","synonyms":[{"name":"increased histone H3-K56 acetylation in transcribed regions during mitotic cell cycle","type":"related"},{"name":"increased histone H3K56 acetylation in transcribed regions during vegetative growth","type":"exact"}],"termid":"FYPO:0002370"}


id: GO:0015528
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: lactose(out) + H+(out) = lactose(in) + H+(in).","definition_xrefs":["TC:2.A.1.5.1","TC:2.A.1.1.9"],"direct_ancestors":[{"relation_name":"is_a","term_name":"carbohydrate:proton symporter activity","termid":"GO:0005351"},{"relation_name":"is_a","term_name":"lactose transmembrane transporter activity","termid":"GO:0015155"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005215"}],"interesting_parent_ids":["GO:0022857","GO:0003674","GO:0005215"],"is_obsolete":false,"name":"lactose:proton symporter activity","synonyms":[{"name":"lactose, galactose:hydrogen symporter activity","type":"broad"},{"name":"lactose:hydrogen symporter activity","type":"exact"}],"termid":"GO:0015528"}


id: PBO:0080202
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"vascular endothelial zinc finger 1","termid":"PBO:0080202"}


id: PBO:0025553
data:
  {"annotation_feature_type":"gene","cv_name":"misc","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA modification, acetylated cytidines","termid":"PBO:0025553"}


id: GO:0015926
data:
  {"annotated_genes":["SJAG_05001","SJAG_01888","SJAG_02446","SJAG_02131","SJAG_04301","SJAG_02649","SJAG_04363","SJAG_03295","SJAG_03824","SJAG_02478","SJAG_02076","SJAG_02590","SJAG_03280","SJAG_02718","SJAG_01017","SJAG_01171","SJAG_02192","SJAG_00667","SJAG_03444","SJAG_03646"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[86802,90395],"is_not":false,"summary":null,"term":"GO:0015926"},{"annotations":[83610,83862,83861,92290,92291],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0090599"},{"annotations":[83684,104576,111780],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0008422"},{"annotations":[83612],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0106407"},{"annotations":[95947],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004573"},{"annotations":[99479],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004339"},{"annotations":[107496,85309],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0051118"},{"annotations":[91284,96310,90210],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0042973"},{"annotations":[104252,98119,98120],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0046557"},{"annotations":[104253,91285,98122,84515,98121],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004338"},{"annotations":[97767,97766],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0032450"},{"annotations":[97768,97769],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0044654"},{"annotations":[112290],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004575"}]},"cv_name":"molecular_function","definition":"Catalysis of the hydrolysis of glucosyl compounds, substances containing a group derived from a cyclic form of glucose or a glucose derivative.","definition_xrefs":["ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hydrolase activity, hydrolyzing O-glycosyl compounds","termid":"GO:0004553"}],"gene_count":20,"genes_by_uniquename":{"SJAG_00667":null,"SJAG_01017":null,"SJAG_01171":null,"SJAG_01888":null,"SJAG_02076":null,"SJAG_02131":null,"SJAG_02192":null,"SJAG_02446":null,"SJAG_02478":null,"SJAG_02590":null,"SJAG_02649":null,"SJAG_02718":null,"SJAG_03280":null,"SJAG_03295":null,"SJAG_03444":null,"SJAG_03646":null,"SJAG_03824":null,"SJAG_04301":null,"SJAG_04363":null,"SJAG_05001":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016798"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003824","GO:0016798","GO:0016787","GO:0003674"],"is_obsolete":false,"name":"glucosidase activity","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0015926","terms_by_termid":{"GO:0004338":null,"GO:0004339":null,"GO:0004573":null,"GO:0004575":null,"GO:0008422":null,"GO:0015926":null,"GO:0032450":null,"GO:0042973":null,"GO:0044654":null,"GO:0046557":null,"GO:0051118":null,"GO:0090599":null,"GO:0106407":null}}


id: GO:0071760
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A protein complex composed of two identical immunoglobulin heavy chains of the IgY isotype and two identical immunoglobulin light chains, held together by disulfide bonds. An IgY immunoglobulin complex may be embedded in the plasma membrane or present in the extracellular space, in mucosal areas or other tissues, or circulating in the blood or lymph.","definition_xrefs":["ISBN:0781765196","GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"immunoglobulin complex","termid":"GO:0019814"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0032991","GO:0005575"],"is_obsolete":false,"name":"IgY immunoglobulin complex","termid":"GO:0071760"}


id: GO:0004315
data:
  {"annotated_genes":["SJAG_01946","SJAG_04972"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[93866,108688],"is_not":false,"summary":null,"term":"GO:0004315"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: acyl-[acyl-carrier protein] + malonyl-[acyl-carrier protein] = 3-oxoacyl-[acyl-carrier protein] + CO2 + [acyl-carrier protein].","definition_xrefs":["RHEA:22836"],"direct_ancestors":[{"relation_name":"is_a","term_name":"acyltransferase activity, transferring groups other than amino-acyl groups","termid":"GO:0016747"}],"gene_count":2,"genes_by_uniquename":{"SJAG_01946":null,"SJAG_04972":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016746"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016740"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016740","GO:0016746"],"is_obsolete":false,"name":"3-oxoacyl-[acyl-carrier-protein] synthase activity","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["MetaCyc:2.3.1.179-RXN","MetaCyc:3-OXOACYL-ACP-SYNTH-RXN","EC:2.3.1.41","GO:0033817"],"synonyms":[{"name":"3-ketoacyl-acyl carrier protein synthase activity","type":"related"},{"name":"3-oxoacyl-ACP synthase activity","type":"exact"},{"name":"3-oxoacyl-[acyl-carrier protein] synthase activity","type":"exact"},{"name":"3-oxoacyl-acyl carrier protein synthase I activity","type":"narrow"},{"name":"3-oxoacyl-acyl-carrier-protein synthase activity","type":"related"},{"name":"acyl-acyl-carrier-protein:malonyl-acyl-carrier-protein C-acyltransferase (decarboxylating)","type":"related"},{"name":"acyl-malonyl acyl carrier protein-condensing enzyme activity","type":"related"},{"name":"acyl-malonyl(acyl-carrier-protein)-condensing enzyme activity","type":"related"},{"name":"beta-ketoacyl acyl carrier protein synthase activity","type":"related"},{"name":"beta-ketoacyl synthetase activity","type":"related"},{"name":"beta-ketoacyl-ACP synthase I activity","type":"narrow"},{"name":"beta-ketoacyl-ACP synthase II activity","type":"narrow"},{"name":"beta-ketoacyl-ACP synthetase activity","type":"related"},{"name":"beta-ketoacyl-[acyl carrier protein] synthase activity","type":"related"},{"name":"beta-ketoacyl-acyl carrier protein synthase activity","type":"related"},{"name":"beta-ketoacyl-acyl carrier protein synthetase activity","type":"related"},{"name":"beta-ketoacyl-acyl-carrier-protein synthase I","type":"narrow"},{"name":"beta-ketoacyl-acyl-carrier-protein synthase II activity","type":"narrow"},{"name":"beta-ketoacylsynthase activity","type":"related"},{"name":"condensing enzyme activity","type":"broad"},{"name":"fatty acid condensing enzyme activity","type":"broad"},{"name":"ketoacyl-ACP synthase activity","type":"exact"}],"termid":"GO:0004315","terms_by_termid":{"GO:0004315":null}}


id: PBO:0005282
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Sim4 and Mal2 associated (4 and 2 associated) protein 4","termid":"PBO:0005282"}


id: GO:0015551
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Enables the transfer of 3-hydroxyphenyl propanoate from one side of a membrane to the other.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"organic hydroxy compound transmembrane transporter activity","termid":"GO:1901618"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0022857"}],"interesting_parent_ids":["GO:0022857","GO:0003674","GO:0005215"],"is_obsolete":false,"name":"3-hydroxyphenyl propanoate transmembrane transporter activity","synonyms":[{"name":"3-hydroxyphenyl propionate transmembrane transporter activity","type":"exact"}],"termid":"GO:0015551"}


id: PATO:0000837
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0000837 auditory threshold value (obsolete PATO:0000837)","termid":"PATO:0000837"}


id: PBO:0041112
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"binder of sperm protein homolog 1","termid":"PBO:0041112"}


id: _global:regulates_characteristic
data:
  {"annotation_feature_type":"gene","cv_name":"external","definition":"A relationship that holds between a process and a characteristic in which process (P) regulates characteristic (C) iff: P results in the existence of C OR affects the intensity or magnitude of C.","direct_ancestors":[{"relation_name":"is_a","term_name":"causally_related_to","termid":"_global:causally_related_to"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"regulates_characteristic","secondary_identifiers":["RO:0019000"],"termid":"_global:regulates_characteristic"}


id: PBO:0071107
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L21 pseudogene 109","termid":"PBO:0071107"}


id: GO:0140225
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A protein complex that has DNA topoisomerase type I and RNA topoisomerase activities.","definition_xrefs":["PMID:23912945","GOC:lnp","PMID:28176834"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein-containing complex","termid":"GO:0032991"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0005575","GO:0032991"],"is_obsolete":false,"name":"DNA topoisomerase III-beta-TDRD3 complex","synonyms":[{"name":"Top3-beta-TDRD3 complex","type":"exact"}],"termid":"GO:0140225"}


id: GO:0140272
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a protein or protein complex from a different species, for example a pathogen molecule binding to a host protein.","definition_xrefs":["PMID:28861068"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein binding","termid":"GO:0005515"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005515"},{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0005488","GO:0003674","GO:0005515"],"is_obsolete":false,"name":"exogenous protein binding","termid":"GO:0140272"}


id: PBO:0089509
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial inheritance GTPase, tubulin-like","termid":"PBO:0089509"}


id: GO:2000869
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of estrone secretion.","definition_xrefs":["GOC:sl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of steroid hormone secretion","termid":"GO:2000833"},{"relation_name":"is_a","term_name":"regulation of estrone secretion","termid":"GO:2000867"},{"relation_name":"positively_regulates","term_name":"estrone secretion","termid":"GO:0035943"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0023052"},{"rel_name":"positively_regulates","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"positively_regulates","termid":"GO:0006810"},{"rel_name":"regulates","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0006810","GO:0023052","GO:0008150"],"is_obsolete":false,"name":"positive regulation of estrone secretion","synonyms":[{"name":"positive regulation of 3-hydroxy-1,3,5(10)-estratrien-17-one secretion","type":"exact"},{"name":"positive regulation of folliculin secretion","type":"exact"}],"termid":"GO:2000869"}


id: PBO:0055222
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2648","termid":"PBO:0055222"}


id: PBO:0051184
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"immunoglobulin heavy variable 3-75 (pseudogene)","termid":"PBO:0051184"}


id: GO:0009946
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The establishment, maintenance and elaboration of the proximal/distal axis. The proximal/distal axis is defined by a line that runs from main body (proximal end) of an organism outward (distal end).","definition_xrefs":["GOC:dph","GOC:tb","GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"axis specification","termid":"GO:0009798"},{"relation_name":"part_of","term_name":"proximal/distal pattern formation","termid":"GO:0009954"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"proximal/distal axis specification","synonyms":[{"name":"proximal/distal axis determination","type":"related"},{"name":"proximodistal axis specification","type":"exact"}],"termid":"GO:0009946"}


id: PBO:0011444
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"rRNA (pseudouridine) methyltransferase Mra1","termid":"PBO:0011444"}


id: PBO:0029545
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-viable_vegetative_cell_with_normal_cell_morphology","termid":"PBO:0029545"}


id: PBO:0068317
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ring finger protein 17","termid":"PBO:0068317"}


id: MOD:01799
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-alanine residue to a methylated serine, such as N-methylserine, N,N-dimethylserine, or N,N,N-trimethylserine.","definition_xrefs":["PubMed:18688235"],"direct_ancestors":[{"relation_name":"is_a","term_name":"methylated residue","termid":"MOD:00427"},{"relation_name":"is_a","term_name":"modified L-serine residue","termid":"MOD:00916"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:00427"}],"interesting_parent_ids":["MOD:00427"],"is_obsolete":false,"name":"methylated serine","synonyms":[{"name":"MeSer","type":"exact"}],"termid":"MOD:01799"}


id: PBO:0055937
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"leucine rich repeat containing 43","termid":"PBO:0055937"}


id: PBO:0085191
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ORF with sequence and positional similarity to the MAL64 gene; the MAL64 gene is thought to be a nonfunctional copy of MAL63; encoded within the complex locus MAL3 in some strains of S. cerevisiae, but not in S288C","termid":"PBO:0085191"}


id: GO:0009992
data:
  {"annotated_genes":["SJAG_04668","SJAG_00409"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[88589,102669],"is_not":false,"summary":null,"term":"GO:0009992"}]},"cv_name":"biological_process","definition":"A homeostatic process involved in the maintenance of a steady state level of water within a cell.","definition_xrefs":["GOC:dph","GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell volume homeostasis","termid":"GO:0006884"},{"relation_name":"is_a","term_name":"intracellular chemical homeostasis","termid":"GO:0055082"}],"gene_count":2,"genes_by_uniquename":{"SJAG_00409":null,"SJAG_04668":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"intracellular water homeostasis","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"cellular osmoregulation","type":"related"},{"name":"cellular water homeostasis","type":"exact"}],"termid":"GO:0009992","terms_by_termid":{"GO:0009992":null}}


id: GO:0055105
data:
  {"annotated_genes":["SJAG_02485","SJAG_04699","SJAG_01515"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[110796],"is_not":false,"summary":null,"term":"GO:0055105"},{"annotations":[111713,94868],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1990948"}]},"cv_name":"molecular_function","definition":"Binds to and stops, prevents or reduces the activity of a ubiquitin-protein transferase.","definition_xrefs":["GOC:rl","GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"enzyme inhibitor activity","termid":"GO:0004857"},{"relation_name":"is_a","term_name":"ubiquitin-protein transferase regulator activity","termid":"GO:0055106"}],"gene_count":3,"genes_by_uniquename":{"SJAG_01515":null,"SJAG_02485":null,"SJAG_04699":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0004857"},{"rel_name":"is_a","termid":"GO:0098772"},{"rel_name":"is_a","termid":"GO:0030234"},{"rel_name":"is_a","termid":"GO:0140678"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0004857","GO:0098772","GO:0030234","GO:0140678","GO:0003674"],"is_obsolete":false,"name":"ubiquitin-protein transferase inhibitor activity","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0055105","terms_by_termid":{"GO:0055105":null,"GO:1990948":null}}


id: PBO:0070773
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L12 pseudogene 3","termid":"PBO:0070773"}


id: GO:0010414
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving xylan, a polymer containing a beta-(1->4)-linked D-xylose backbone decorated with glucuronic acid and arabinose side units.","definition_xrefs":["GOC:tair_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"glucuronoxylan metabolic process","termid":"GO:0010413"},{"relation_name":"is_a","term_name":"arabinoxylan-containing compound metabolic process","termid":"GO:0010416"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005975"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0071554"}],"interesting_parent_ids":["GO:0005975","GO:0008150","GO:0071554"],"is_obsolete":false,"name":"glucuronoarabinoxylan metabolic process","synonyms":[{"name":"glucuronoarabinoxylan metabolism","type":"exact"}],"termid":"GO:0010414"}


id: GO:0002256
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate, or extent of the kinin cascade.","definition_xrefs":["GOC:jal"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of acute inflammatory response","termid":"GO:0002673"},{"relation_name":"is_a","term_name":"regulation of protein activation cascade","termid":"GO:2000257"},{"relation_name":"regulates","term_name":"kinin cascade","termid":"GO:0002254"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0051604"}],"interesting_parent_ids":["GO:0010467","GO:0008150","GO:0051604"],"is_obsolete":false,"name":"regulation of kinin cascade","termid":"GO:0002256"}


id: PR:G2TRU0
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- ost5 gene.","definition_xrefs":["UniProtKB:G2TRU0","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit ost5 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC18.19c","synonyms":[{"name":"Spom972h-ost5","type":"exact"},{"name":"oligosaccharyl transferase subunit ost5 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"oligosaccharyl transferase subunit zeta (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:G2TRU0"}


id: PBO:0034297
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-is_symbiosis","termid":"PBO:0034297"}


id: PBO:0013071
data:
  {"annotation_feature_type":"gene","cv_name":"name_description","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Ataxia-Two Homolog","termid":"PBO:0013071"}


id: PBO:0045291
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dynamin 1 pseudogene 43","termid":"PBO:0045291"}


id: FYPO:0003703
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which the observed rate of histone deacetylase activity is abnormal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal chromatin organization","termid":"FYPO:0000642"},{"relation_name":"is_a","term_name":"abnormal catalytic activity","termid":"FYPO:0000661"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000707"},{"rel_name":"is_a","termid":"FYPO:0000654"},{"rel_name":"is_a","termid":"FYPO:0000641"},{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000661"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0000652","FYPO:0000002","FYPO:0005447","FYPO:0000707","FYPO:0001985","FYPO:0000654","FYPO:0000661","FYPO:0000641"],"is_obsolete":false,"name":"abnormal histone deacetylase activity","termid":"FYPO:0003703"}


id: GO:0140586
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Bridging together a cis-regulatory element and a terminator DNA sequences on the chromatin, holding two loop anchors together, maintaining a chromatin loop.","definition_xrefs":["PMID:19933151"],"direct_ancestors":[{"relation_name":"is_a","term_name":"chromatin loop anchoring activity","termid":"GO:0140587"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0060090"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003677"},{"rel_name":"is_a","termid":"GO:0005488"}],"interesting_parent_ids":["GO:0003677","GO:0060090","GO:0005488","GO:0003674"],"is_obsolete":false,"name":"promoter-terminator loop anchoring activity","synonyms":[{"name":"terminator-promoter loop anchoring activity","type":"exact"}],"termid":"GO:0140586"}


id: GO:0097386
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A prolongation or process extending from a glial cell.","definition_xrefs":["GOC:mc"],"direct_ancestors":[{"relation_name":"is_a","term_name":"plasma membrane bounded cell projection","termid":"GO:0120025"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"glial cell projection","synonyms":[{"name":"glial process","type":"related"},{"name":"glial projection","type":"related"}],"termid":"GO:0097386"}


id: PBO:0002829
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase family or domain","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"wtf element","termid":"PBO:0002829"}


id: PBO:0004008
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"G-protein alpha subunit","termid":"PBO:0004008"}


id: PBO:0045760
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"enoyl-CoA hydratase 1","termid":"PBO:0045760"}


id: PBO:0030710
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abolished_chromatin_binding","termid":"PBO:0030710"}


id: PBO:0031819
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_apoptosis","termid":"PBO:0031819"}


id: GO:1901561
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a benomyl stimulus.","definition_xrefs":["GOC:TermGenie"],"gene_count":0,"genotype_count":0,"name":"obsolete response to benomyl (obsolete GO:1901561)","termid":"GO:1901561"}


id: PBO:0085931
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein of unknown function; mRNA identified as translated by ribosome profiling data","termid":"PBO:0085931"}


id: GO:0021742
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of the abducens nucleus over time, from its formation to the mature structure.","definition_xrefs":["GOC:dph","GOC:dgh","GOC:cls","GO_REF:0000021","GOC:curators","GOC:jid"],"direct_ancestors":[{"relation_name":"is_a","term_name":"neural nucleus development","termid":"GO:0048857"},{"relation_name":"part_of","term_name":"pons development","termid":"GO:0021548"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"abducens nucleus development","termid":"GO:0021742"}


id: PBO:0057009
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mir-100-let-7a-2-mir-125b-1 cluster host gene","termid":"PBO:0057009"}


id: GO:1900083
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that modulates the frequency, rate or extent of Sertoli cell proliferation.","definition_xrefs":["GOC:pr","GOC:TermGenie"],"gene_count":0,"genotype_count":0,"name":"obsolete regulation of Sertoli cell proliferation (obsolete GO:1900083)","synonyms":[{"name":"regulation of Sertoli cell proliferation","type":"exact"}],"termid":"GO:1900083"}


id: PBO:0091495
data:
  {"annotation_feature_type":"gene","cv_name":"complementation","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"does not functionally complement S. cerevisiae HAL3","termid":"PBO:0091495"}


id: GO:0060101
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of the internalization of bacteria, immune complexes and other particulate matter or of an apoptotic cell by phagocytosis.","definition_xrefs":["GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of phagocytosis","termid":"GO:0050765"},{"relation_name":"is_a","term_name":"regulation of phagocytosis, engulfment","termid":"GO:0060099"},{"relation_name":"is_a","term_name":"negative regulation of membrane invagination","termid":"GO:1905154"},{"relation_name":"negatively_regulates","term_name":"phagocytosis, engulfment","termid":"GO:0006911"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"negatively_regulates","termid":"GO:0016192"},{"rel_name":"negatively_regulates","termid":"GO:0061024"},{"rel_name":"regulates","termid":"GO:0016192"},{"rel_name":"negatively_regulates","termid":"GO:0006810"},{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"regulates","termid":"GO:0061024"}],"interesting_parent_ids":["GO:0008150","GO:0061024","GO:0006810","GO:0016192"],"is_obsolete":false,"name":"negative regulation of phagocytosis, engulfment","termid":"GO:0060101"}


id: PBO:0034352
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-evolutionary_variant_of","termid":"PBO:0034352"}


id: FYPO:0003429
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which a cell contains fewer, and shorter, cytoplasmic microtubules than normal during interphase of the mitotic cell cycle.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"microtubules present in decreased numbers","termid":"FYPO:0003430"},{"relation_name":"is_a","term_name":"short interphase microtubules","termid":"FYPO:0006103"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0002399"},{"rel_name":"output_of","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0000054"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0000054","FYPO:0001320","FYPO:0005447","FYPO:0002399","FYPO:0001985"],"is_obsolete":false,"name":"short interphase microtubules present in decreased numbers","synonyms":[{"name":"short cytoplasmic microtubules present in decreased numbers during interphase of mitotic cell cycle","type":"exact"},{"name":"short cytoplasmic microtubules present in decreased numbers during mitotic interphase","type":"exact"},{"name":"short interphase cytoplasmic microtubules present in decreased numbers","type":"exact"},{"name":"short interphase microtubules present in decreased numbers during vegetative growth","type":"exact"},{"name":"short interphase microtubules present in reduced numbers","type":"exact"}],"termid":"FYPO:0003429"}


id: SO:0001955
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A polypeptide region that proves structure in a protein that affects the stability of the protein.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"polypeptide_region","termid":"SO:0000839"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"SO:0000839"}],"interesting_parent_ids":["SO:0000839"],"is_obsolete":false,"name":"protein_stability_element","synonyms":[{"name":"protein stability element","type":"related"}],"termid":"SO:0001955"}


id: PBO:0055188
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2612","termid":"PBO:0055188"}


id: GO:0050161
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: oxalate + succinyl-CoA = oxalyl-CoA + succinate.","definition_xrefs":["EC:2.8.3.2","RHEA:23588"],"direct_ancestors":[{"relation_name":"is_a","term_name":"CoA-transferase activity","termid":"GO:0008410"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0016782"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016782","GO:0003824","GO:0016740","GO:0003674"],"is_obsolete":false,"name":"succinyl-CoA:oxalate CoA-transferase","secondary_identifiers":["MetaCyc:OXALATE-COA-TRANSFERASE-RXN","KEGG_REACTION:R01559"],"synonyms":[{"name":"oxalate CoA-transferase activity","type":"related"},{"name":"oxalate coenzyme A-transferase activity","type":"related"},{"name":"succinyl-CoA:oxalate CoA-transferase activity","type":"related"},{"name":"succinyl-beta-ketoacyl-CoA transferase activity","type":"related"}],"termid":"GO:0050161"}


id: PBO:0069660
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 937, pseudogene","termid":"PBO:0069660"}


id: PBO:0085919
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein of unknown function; member of the seripauperin multigene family encoded mainly in subtelomeric regions; expression is induced after ethanol shock; SWAT-GFP and mCherry fusion proteins localize to the endoplasmic reticulum and vacuole respectively","termid":"PBO:0085919"}


id: SO:0001272
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A noncoding RNA that binds to a specific amino acid to allow that amino acid to be used by the ribosome during translation of RNA.","direct_ancestors":[{"relation_name":"has_quality","term_name":"tRNA_encoding","termid":"SO:0000663"},{"relation_name":"is_a","term_name":"sncRNA_gene","termid":"SO:0002342"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA_gene","synonyms":[{"name":"tRNA gene","type":"exact"}],"termid":"SO:0001272"}


id: GO:0042277
data:
  {"annotated_genes":["SJAG_03662","SJAG_00181","SJAG_03781","SJAG_02330","SJAG_00702","SJAG_01282","SJAG_01759","SJAG_01909","SJAG_03959","SJAG_00326","SJAG_03299","SJAG_03684","SJAG_04411","SJAG_02998","SJAG_01488","SJAG_01013","SJAG_01840","SJAG_03729","SJAG_01640","SJAG_02208","SJAG_02418","SJAG_03358","SJAG_00840","SJAG_00962","SJAG_04996"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[101926],"is_not":false,"summary":null,"term":"GO:0042277"},{"annotations":[87810,112096,111294],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0030942"},{"annotations":[109815],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0045015"},{"annotations":[95595,103472,95706],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0030943"},{"annotations":[114825,85227,90178,92307,88111,89620,91946,99848,99557,111991],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0008139"},{"annotations":[108035],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0005052"},{"annotations":[86638],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0005053"},{"annotations":[86630],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0033328"},{"annotations":[105530,112809,100242,102342],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0005048"}]},"cv_name":"molecular_function","definition":"Binding to a peptide, an organic compound comprising two or more amino acids linked by peptide bonds.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"binding","termid":"GO:0005488"}],"gene_count":25,"genes_by_uniquename":{"SJAG_00181":null,"SJAG_00326":null,"SJAG_00702":null,"SJAG_00840":null,"SJAG_00962":null,"SJAG_01013":null,"SJAG_01282":null,"SJAG_01488":null,"SJAG_01640":null,"SJAG_01759":null,"SJAG_01840":null,"SJAG_01909":null,"SJAG_02208":null,"SJAG_02330":null,"SJAG_02418":null,"SJAG_02998":null,"SJAG_03299":null,"SJAG_03358":null,"SJAG_03662":null,"SJAG_03684":null,"SJAG_03729":null,"SJAG_03781":null,"SJAG_03959":null,"SJAG_04411":null,"SJAG_04996":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0005488"],"is_obsolete":false,"name":"peptide binding","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0042277","terms_by_termid":{"GO:0005048":null,"GO:0005052":null,"GO:0005053":null,"GO:0008139":null,"GO:0030942":null,"GO:0030943":null,"GO:0033328":null,"GO:0042277":null,"GO:0045015":null}}


id: PBO:0056523
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"membrane bound transcription factor peptidase, site 2","termid":"PBO:0056523"}


id: PBO:0087117
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Ribosome biogenesis factor required for maturation of 18S rRNA; null mutant is sensitive to hydroxyurea and is delayed in recovering from alpha-factor arrest; green fluorescent protein (GFP)-fusion protein localizes to the nucleolus","termid":"PBO:0087117"}


id: SO:0002151
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A uORF beginning with a codon other than AUG.","definition_xrefs":["PMID:27313038","PMID:26684391"],"direct_ancestors":[{"relation_name":"is_a","term_name":"uORF","termid":"SO:0002027"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"non_AUG_initiated_uORF","synonyms":[{"name":"non AUG initiated uORF","type":"exact"}],"termid":"SO:0002151"}


id: PBO:0042669
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CEA cell adhesion molecule pseudogene 3","termid":"PBO:0042669"}


id: PBO:0086608
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Putative protein of unknown function; gene expression regulated by copper levels","termid":"PBO:0086608"}


id: PBO:0028892
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_protein_localization_to_chromatin_during_vegetative_growth","termid":"PBO:0028892"}


id: PBO:0038596
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"acyl-CoA dehydrogenase short chain","termid":"PBO:0038596"}


id: PBO:0056375
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitogen-activated protein kinase 8 interacting protein 2","termid":"PBO:0056375"}


id: GO:0010962
data:
  {"annotated_genes":["SJAG_00610","SJAG_03705","SJAG_01787","SJAG_00963","SJAG_04771","SJAG_04666","SJAG_02278","SJAG_04668","SJAG_04462","SJAG_04509","SJAG_01376","SJAG_00424"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[77877,87129],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0045719"},{"annotations":[88601],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0060635"},{"annotations":[88604,83750],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0140748"},{"annotations":[84130],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0032951"},{"annotations":[88590,99019,101510,114035,86971,88606],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0090334"},{"annotations":[88610,91114,85649,99021],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0070610"}]},"cv_name":"biological_process","definition":"Any process that modulates the rate, frequency, or extent of glucan biosynthesis. Glucan biosynthetic processes are the chemical reactions and pathways resulting in the formation of glucans, polysaccharides consisting only of glucose residues.","definition_xrefs":["GOC:dph","GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of polysaccharide biosynthetic process","termid":"GO:0032885"},{"relation_name":"regulates","term_name":"glucan biosynthetic process","termid":"GO:0009250"}],"gene_count":12,"genes_by_uniquename":{"SJAG_00424":null,"SJAG_00610":null,"SJAG_00963":null,"SJAG_01376":null,"SJAG_01787":null,"SJAG_02278":null,"SJAG_03705":null,"SJAG_04462":null,"SJAG_04509":null,"SJAG_04666":null,"SJAG_04668":null,"SJAG_04771":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0005975"}],"interesting_parent_ids":["GO:0008150","GO:0005975"],"is_obsolete":false,"name":"regulation of glucan biosynthetic process","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"termid":"GO:0010962","terms_by_termid":{"GO:0032951":null,"GO:0045719":null,"GO:0060635":null,"GO:0070610":null,"GO:0090334":null,"GO:0140748":null}}


id: PBO:0051630
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"inner mitochondrial membrane peptidase subunit 1","termid":"PBO:0051630"}


id: PBO:0058911
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 12129","termid":"PBO:0058911"}


id: GO:0032677
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  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate, or extent of interleukin-8 production.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of cytokine production","termid":"GO:0001817"},{"relation_name":"regulates","term_name":"interleukin-8 production","termid":"GO:0032637"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0010467","GO:0008150"],"is_obsolete":false,"name":"regulation of interleukin-8 production","secondary_identifiers":["GO:2000482","GO:0045414"],"synonyms":[{"name":"regulation of IL-8 production","type":"exact"},{"name":"regulation of interleukin-8 biosynthetic process","type":"narrow"},{"name":"regulation of interleukin-8 secretion","type":"narrow"}],"termid":"GO:0032677"}


id: FYPO:0007412
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A physical cellular phenotype observed in the vegetative growth phase of the life cycle in which the orientation of the mitotic spindle is normal (i.e. indistinguishable from wild type, parallel with the long axis of the cell).","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal subcellular component during vegetative growth","termid":"FYPO:0001313"},{"relation_name":"is_a","term_name":"normal spindle","termid":"FYPO:0004568"},{"relation_name":"part_of","term_name":"normal mitotic spindle","termid":"FYPO:0001399"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"part_of","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0000002","FYPO:0000257"],"is_obsolete":false,"name":"normal mitotic spindle orientation","termid":"FYPO:0007412"}


id: PBO:0084811
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Mitochondrial protein of unknown function; mCherry fusion protein localizes to the vacuole","termid":"PBO:0084811"}


id: PBO:0031491
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-long_spindle","termid":"PBO:0031491"}


id: GO:0100010
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any prostaglandin biosynthetic process process that positively_regulates fever generation.","definition_xrefs":["GOC:obol","GOC:cjm"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of fever generation by prostaglandin biosynthetic process","termid":"GO:0100008"},{"relation_name":"positively_regulates","term_name":"fever generation","termid":"GO:0001660"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0006629"}],"interesting_parent_ids":["GO:0044281","GO:0006629","GO:0008150"],"is_obsolete":false,"name":"positive regulation of fever generation by prostaglandin biosynthetic process","termid":"GO:0100010"}


id: PBO:0052064
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"lysine acetyltransferase 6A","termid":"PBO:0052064"}


id: PBO:0089100
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"heat shock protein Ssz1","termid":"PBO:0089100"}


id: GO:0010457
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The cell cycle process in which the two centrioles within a centrosome remain tightly paired.","definition_xrefs":["GOC:tb","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell cycle process","termid":"GO:0022402"},{"relation_name":"part_of","term_name":"centrosome cycle","termid":"GO:0007098"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0007049"},{"rel_name":"part_of","termid":"GO:0007010"},{"rel_name":"part_of","termid":"GO:0000226"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0007010","GO:0000226","GO:0007049","GO:0008150"],"is_obsolete":false,"name":"centriole-centriole cohesion","termid":"GO:0010457"}


id: PR:Q9UT87
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- img1 gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q9UT87"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"54S ribosomal protein subunit img1, mitochondrial (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC343.02","synonyms":[{"name":"Spom972h-img1","type":"exact"}],"termid":"PR:Q9UT87"}


id: PBO:0080936
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"YY1 transcription factor pseudogene 2","termid":"PBO:0080936"}


id: PBO:0066639
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal modification protein rimK like family member B","termid":"PBO:0066639"}


id: PBO:0008072
data:
  {"annotation_feature_type":"gene","cv_name":"complementation","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"functionally complemented by S. cerevisiae YPS1","termid":"PBO:0008072"}


id: SOFP:aminoacid
data:
  {"annotation_feature_type":"gene","cv_name":"feature_property","definition":"amino acid coded for by a tRNA transcript feature","definition_xrefs":["so:cjm"],"direct_ancestors":[{"relation_name":"is_a","term_name":"feature_property","termid":"SOFP:feature_property"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"aminoacid","termid":"SOFP:aminoacid"}


id: GO:0035963
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an interleukin-13 stimulus.","definition_xrefs":["GOC:sjw","PMID:20100461"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to interleukin-13","termid":"GO:0035962"},{"relation_name":"is_a","term_name":"cellular response to cytokine stimulus","termid":"GO:0071345"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cellular response to interleukin-13","synonyms":[{"name":"cellular response to IL-13","type":"exact"}],"termid":"GO:0035963"}


id: PBO:0056402
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MAPT intronic transcript 1","termid":"PBO:0056402"}


id: PBO:0058946
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MIX23 pseudogene 5","termid":"PBO:0058946"}


id: PBO:0027901
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_spliced_cen-dg_RNA_level","termid":"PBO:0027901"}


id: PBO:0090659
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"FAD-dependent amino acid oxidase involved in late endosome to Golgi transport Tda3","termid":"PBO:0090659"}


id: PBO:0043146
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"capicua transcriptional repressor pseudogene 14","termid":"PBO:0043146"}


id: PBO:0042175
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cellular communication network factor 5","termid":"PBO:0042175"}


id: PR:Q9HDU9
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPBPB2B2.06c gene.","definition_xrefs":["UniProtKB:Q9HDU9","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized protein PB2B2.06c (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBPB2B2.06c","synonyms":[{"name":"Spom972h-SPBPB2B2.06c","type":"exact"}],"termid":"PR:Q9HDU9"}


id: PR:P08647
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  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- ras1 gene.","definition_xrefs":["PRO:DNx","UniProtKB:P08647"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ras-like protein 1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC17H9.09c","synonyms":[{"name":"Spom972h-ras1","type":"exact"}],"termid":"PR:P08647"}


id: PBO:0073243
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"selenophosphate synthetase 2","termid":"PBO:0073243"}


id: GO:0016614
data:
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id: GO:0005457
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id: PBO:0038395
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id: PBO:0076770
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id: PBO:0050373
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id: FYPO:0007468
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id: GO:0099095
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id: GO:0047253
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id: PBO:0065261
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id: GO:0097659
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id: GO:1901374
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id: SO:0100004
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  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A motif of 3 consecutive residues with dihedral angles as follows: res i: phi -90 bounds -120 to -60, res i: psi -10 bounds -50 to 30, res i+1: phi -75 bounds -100 to -50, res i+1: psi 140 bounds 110 to 170. An extra restriction of the length of the O to O distance would be useful, that it be less than 5 Angstrom. More precisely these two oxygens are the main chain carbonyl oxygen atoms of residues i-1 and i+1.","definition_xrefs":["EBIBS:GAR"],"direct_ancestors":[{"relation_name":"is_a","term_name":"polypeptide_secondary_structure","termid":"SO:0001078"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"SO:0000839"}],"interesting_parent_ids":["SO:0000839"],"is_obsolete":false,"name":"catmat_left_handed_three","synonyms":[{"name":"catmat-3l","type":"exact"}],"termid":"SO:0100004"}


id: PBO:0002459
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  {"annotation_feature_type":"gene","cv_name":"EC numbers","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"2.4.2.17","termid":"PBO:0002459"}


id: PBO:0002657
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id: GO:1902406
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id: GO:0044260
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id: PBO:0015220
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id: PBO:0038535
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id: GO:1903248
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id: PBO:0060353
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id: PBO:0051642
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  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"inositol monophosphatase 1 pseudogene 1","termid":"PBO:0051642"}


id: PBO:0086320
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  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein with similarity to heat shock transcription factors; overexpression suppresses the pseudohyphal filamentation defect of a diploid mep1 mep2 homozygous null mutant; HMS2 has a paralog, SKN7, that arose from the whole genome duplication","termid":"PBO:0086320"}


id: PR:Q7Z992
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- sst6 gene.","definition_xrefs":["UniProtKB:Q7Z992","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ESCRT-I complex subunit vps23 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC11H11.01","synonyms":[{"name":"Spom972h-sst6","type":"exact"},{"name":"suppressor of ste12 deletion protein 6 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:Q7Z992"}


id: PBO:0064752
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"peptidylprolyl isomerase A pseudogene 88","termid":"PBO:0064752"}


id: GO:0098582
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A vocalisation behavior that is innate, i.e. that does not need to be learned in order to occur.","definition_xrefs":["GOC:BHF","GOC:rl","GOC:dos"],"direct_ancestors":[{"relation_name":"is_a","term_name":"vocalization behavior","termid":"GO:0071625"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"innate vocalization behavior","termid":"GO:0098582"}


id: PBO:0040593
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"BACH1 intronic transcript 3","termid":"PBO:0040593"}


id: PBO:0067650
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 825, pseudogene","termid":"PBO:0067650"}


id: PBO:0086193
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein similar to the human peptidyl-tRNA hydrolase gene ICT1; associates with mitochondrial large subunit; may function in translation termination; YOL114C is not an essential gene","termid":"PBO:0086193"}


id: PBO:0003391
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glucan endo-1,3-alpha-glucosidase Agn2","termid":"PBO:0003391"}


id: GO:0019782
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the activation of the small ubiquitin-related modifier ISG15, through the formation of an ATP-dependent high-energy thiolester bond.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ubiquitin-like modifier activating enzyme activity","termid":"GO:0008641"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0140096"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016874"}],"interesting_parent_ids":["GO:0003674","GO:0140096","GO:0016874","GO:0003824"],"is_obsolete":false,"name":"ISG15 activating enzyme activity","synonyms":[{"name":"UBE1L","type":"narrow"}],"termid":"GO:0019782"}


id: PBO:0040335
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ATP5MC2 pseudogene 1","termid":"PBO:0040335"}


id: GO:1904069
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving ascaroside.","definition_xrefs":["GO_REF:0000068","GOC:kmv","PMID:25775534","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"glycoside metabolic process","termid":"GO:0016137"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"ascaroside metabolic process","synonyms":[{"name":"ascaroside metabolism","type":"exact"}],"termid":"GO:1904069"}


id: GO:0007260
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process of introducing a phosphate group to a tyrosine residue of a STAT (Signal Transducer and Activator of Transcription) protein.","definition_xrefs":["GOC:jl","PMID:10918594"],"direct_ancestors":[{"relation_name":"is_a","term_name":"peptidyl-tyrosine phosphorylation","termid":"GO:0018108"},{"relation_name":"part_of","term_name":"cell surface receptor signaling pathway via JAK-STAT","termid":"GO:0007259"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"tyrosine phosphorylation of STAT protein","secondary_identifiers":["GO:0042507","GO:0042504","GO:0042508","GO:0042503","GO:0042505","GO:0042502","GO:0042506"],"synonyms":[{"name":"tyrosine phosphorylation of Stat1 protein","type":"narrow"},{"name":"tyrosine phosphorylation of Stat2 protein","type":"narrow"},{"name":"tyrosine phosphorylation of Stat3 protein","type":"narrow"},{"name":"tyrosine phosphorylation of Stat4 protein","type":"narrow"},{"name":"tyrosine phosphorylation of Stat5 protein","type":"narrow"},{"name":"tyrosine phosphorylation of Stat6 protein","type":"narrow"},{"name":"tyrosine phosphorylation of Stat7 protein","type":"narrow"}],"termid":"GO:0007260"}


id: PBO:0053377
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 303","termid":"PBO:0053377"}


id: PBO:0061413
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"neuropeptide VF precursor","termid":"PBO:0061413"}


id: MOD:01392
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively crosslinks an L-cysteine residue and an L-asparagine residue, and C-4 methylates to form L-asparagine 5-methylthiazole-4-carboxylic acid.","definition_xrefs":["PubMed:1880060","RESID:AA0469","PubMed:10625477","PubMed:7844053"],"direct_ancestors":[{"relation_name":"derives_from","term_name":"C-methylated residue","termid":"MOD:00656"},{"relation_name":"is_a","term_name":"thiazole/thiazoline ring crosslinked residues","termid":"MOD:01420"},{"relation_name":"is_a","term_name":"didehydrogenated residue","termid":"MOD:01888"},{"relation_name":"is_a","term_name":"crosslinked L-asparagine residue","termid":"MOD:02042"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"L-asparagine 5-methylthiazole-4-carboxylic acid","synonyms":[{"name":"2-[(1S)-1,3-bisazanyl-3-oxopropyl]-5-methyl-1,3-thiazole-4-carboxylic acid","type":"exact"},{"name":"2-[(1S)-1,3-diamino-3-oxopropyl]-5-methyl-1,3-thiazole-4-carboxylic acid","type":"exact"},{"name":"CROSSLNK 5-methylthiazole-4-carboxylic acid (Asn-Cys)","type":"exact"},{"name":"L-asparagine 5-methylthiazole-4-carboxylic acid","type":"exact"}],"termid":"MOD:01392"}


id: PBO:0080590
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"WD repeat domain 17","termid":"PBO:0080590"}


id: PBO:0076728
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transcobalamin 1","termid":"PBO:0076728"}


id: GO:0001616
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Combining with ghrelin to initiate a change in cell activity.","definition_xrefs":["GOC:mah","PMID:17983853"],"direct_ancestors":[{"relation_name":"is_a","term_name":"G protein-coupled receptor activity","termid":"GO:0004930"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0038023"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0038023"],"is_obsolete":false,"name":"growth hormone secretagogue receptor activity","synonyms":[{"name":"ghrelin receptor activity","type":"exact"}],"termid":"GO:0001616"}


id: GO:0150021
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which the anatomical structures of an apical dendrite are generated and organized.","definition_xrefs":["PMID:22683681","GOC:aruk","GOC:bc"],"direct_ancestors":[{"relation_name":"is_a","term_name":"dendrite morphogenesis","termid":"GO:0048813"},{"relation_name":"part_of","term_name":"apical dendrite development","termid":"GO:0150022"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"apical dendrite morphogenesis","termid":"GO:0150021"}


id: GO:1900571
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of diorcinol.","definition_xrefs":["GOC:TermGenie","GOC:di"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phenol-containing compound catabolic process","termid":"GO:0019336"},{"relation_name":"is_a","term_name":"secondary metabolite catabolic process","termid":"GO:0090487"},{"relation_name":"is_a","term_name":"diorcinol metabolic process","termid":"GO:1900570"},{"relation_name":"is_a","term_name":"ether catabolic process","termid":"GO:1901502"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0019748"}],"interesting_parent_ids":["GO:0044281","GO:0008150","GO:0019748"],"is_obsolete":false,"name":"diorcinol catabolic process","synonyms":[{"name":"diorcinol breakdown","type":"exact"},{"name":"diorcinol catabolism","type":"exact"},{"name":"diorcinol degradation","type":"exact"}],"termid":"GO:1900571"}


id: GO:0140728
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a GC-box, a DNA motif with the consensus sequence GGGCGG that is located upstream of the start point of eukaryotic transcription units. The GC-box may occur in multiple copies or in either orientation relative to the transcription start site.","definition_xrefs":["PMID:14701757"],"direct_ancestors":[{"relation_name":"is_a","term_name":"RNA polymerase II cis-regulatory region sequence-specific DNA binding","termid":"GO:0000978"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0000976"},{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003677"}],"interesting_parent_ids":["GO:0003677","GO:0003674","GO:0000976","GO:0005488"],"is_obsolete":false,"name":"GC-box binding","synonyms":[{"name":"GC box binding","type":"exact"},{"name":"GC rich promoter region binding","type":"broad"},{"name":"GC-rich region binding","type":"broad"},{"name":"GC_rich_promoter_region binding","type":"broad"}],"termid":"GO:0140728"}


id: PR:P79081
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A diamine acetyltransferase 2 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx","OMA:SCHPO00741"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"N-acetyltransferase ats1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC1002.07c","secondary_identifiers":["UniProtKB:P79081"],"synonyms":[{"name":"Spom972h-SAT2","type":"exact"}],"termid":"PR:P79081"}


id: GO:0010933
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that increases the frequency, rate, or extent of B cell tolerance induction.","definition_xrefs":["GOC:dph","GOC:tb","GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of tolerance induction","termid":"GO:0002645"},{"relation_name":"is_a","term_name":"regulation of macrophage tolerance induction","termid":"GO:0010932"},{"relation_name":"positively_regulates","term_name":"macrophage tolerance induction","termid":"GO:0010931"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of macrophage tolerance induction","termid":"GO:0010933"}


id: PBO:0044496
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cell cycle regulator of NHEJ","termid":"PBO:0044496"}


id: GO:0019780
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the activation of the small ubiquitin-related modifier FAT10, through the formation of an ATP-dependent high-energy thiolester bond.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ubiquitin-like modifier activating enzyme activity","termid":"GO:0008641"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0140096"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016874"}],"interesting_parent_ids":["GO:0140096","GO:0003824","GO:0003674","GO:0016874"],"is_obsolete":false,"name":"FAT10 activating enzyme activity","termid":"GO:0019780"}


id: PBO:0024832
data:
  {"annotation_feature_type":"gene","cv_name":"name_description","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MYosin II of Pombe","termid":"PBO:0024832"}


id: GO:0047391
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: H2O + 1-alkyl-sn-glycero-3-phosphoethanolamine = ethanolamine + 1-alkyl-sn-glycerol 3-phosphate.","definition_xrefs":["EC:3.1.4.39","MetaCyc:3.1.4.39-RXN"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phosphoric diester hydrolase activity","termid":"GO:0008081"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016788"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016787"}],"interesting_parent_ids":["GO:0003824","GO:0016787","GO:0003674","GO:0016788"],"is_obsolete":false,"name":"alkylglycerophosphoethanolamine phosphodiesterase activity","secondary_identifiers":["RHEA:15965"],"synonyms":[{"name":"1-alkyl-sn-glycero-3-phosphoethanolamine ethanolaminehydrolase activity","type":"related"},{"name":"lysophospholipase D activity","type":"related"}],"termid":"GO:0047391"}


id: PBO:0090153
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial cytochrome c-heme linkage protein Cyc2","termid":"PBO:0090153"}


id: PBO:0039372
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"AMMECR1 like pseudogene 1","termid":"PBO:0039372"}


id: PBO:0004435
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"translation initiation factor eIF1A","termid":"PBO:0004435"}


id: MOD:00445
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-lysine residue to L-homoarginine, such as reaction with O-methylisourea.","definition_xrefs":["OMSSA:53","PubMed:11821862","Unimod:52","PubMed:11078590","PubMed:11085420"],"direct_ancestors":[{"relation_name":"is_a","term_name":"reagent derivatized residue","termid":"MOD:00848"},{"relation_name":"is_a","term_name":"modified L-lysine residue","termid":"MOD:00912"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"L-homoarginine","synonyms":[{"name":"Guanidination","type":"related"},{"name":"Guanidinyl","type":"related"},{"name":"guanidinationk","type":"exact"}],"termid":"MOD:00445"}


id: GO:0035268
data:
  {"annotated_genes":["SJAG_04316","SJAG_00598","SJAG_00831","SJAG_05219","SJAG_01264","SJAG_01021","SJAG_01491","SJAG_02903","SJAG_04053"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[89209,102127],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0044845"},{"annotations":[89210,92604,114497,100678,97706,99950,100258,102895],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0035269"}]},"cv_name":"biological_process","definition":"The addition of a mannose residue to a protein acceptor molecule.","definition_xrefs":["GOC:pr","GOC:bf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein glycosylation","termid":"GO:0006486"},{"relation_name":"is_a","term_name":"mannosylation","termid":"GO:0097502"}],"gene_count":9,"genes_by_uniquename":{"SJAG_00598":null,"SJAG_00831":null,"SJAG_01021":null,"SJAG_01264":null,"SJAG_01491":null,"SJAG_02903":null,"SJAG_04053":null,"SJAG_04316":null,"SJAG_05219":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006486"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006486","GO:0008150"],"is_obsolete":false,"name":"protein mannosylation","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"protein amino acid mannosylation","type":"exact"}],"termid":"GO:0035268","terms_by_termid":{"GO:0035269":null,"GO:0044845":null}}


id: PBO:0058398
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 4770","termid":"PBO:0058398"}


id: PBO:0002569
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"neddylation pathway protein But1","termid":"PBO:0002569"}


id: GO:0005591
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A collagen heterotrimer containing type VIII alpha chains; [alpha1(VIII)2]alpha2(VIII) and alpha1(VIII)[alpha2(VIII)]2 trimers have been observed; type VIII collagen triple helices associate to form regular hexagonal nets.","definition_xrefs":["PMID:21421911","ISBN:0721639976"],"direct_ancestors":[{"relation_name":"is_a","term_name":"short-chain collagen trimer","termid":"GO:0005598"},{"relation_name":"is_a","term_name":"sheet-forming collagen trimer","termid":"GO:0030935"},{"relation_name":"is_a","term_name":"basement membrane collagen trimer","termid":"GO:0098651"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575","GO:0032991"],"is_obsolete":false,"name":"collagen type VIII trimer","termid":"GO:0005591"}


id: FYPO:0007123
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A physical cellular phenotype observed during mitotic prophase (in the vegetative growth phase of the life cycle) in which the mitotic spindle has two poles, but spindle microtubules (MTs) are not aligned into parallel or anti-parallel bundles. Instead, MTs extend in random directions from the asters, and the spindle does not elongate.","definition_xrefs":["PMID:31615768","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal bipolar mitotic spindle","termid":"FYPO:0001574"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000120"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0002399"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0000054"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0000120","FYPO:0005447","FYPO:0000054","FYPO:0002399","FYPO:0001985","FYPO:0000002"],"is_obsolete":false,"name":"unbundled spindle during mitotic prophase","synonyms":[{"name":"unbundled spindle during mitotic prophase during prophase of mitotic cell cycle","type":"exact"},{"name":"unbundled spindle during mitotic prophase during vegetative growth","type":"exact"},{"name":"unbundled spindle microtubules during mitotic prophase","type":"exact"}],"termid":"FYPO:0007123"}


id: GO:1902796
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of snoRNA processing.","definition_xrefs":["GOC:TermGenie","PMID:24210919","GO_REF:0000058"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of gene expression","termid":"GO:0010468"},{"relation_name":"is_a","term_name":"regulation of snoRNA metabolic process","termid":"GO:1903323"},{"relation_name":"regulates","term_name":"sno(s)RNA processing","termid":"GO:0043144"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0016074"},{"rel_name":"regulates","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0016074","GO:0010467","GO:0008150"],"is_obsolete":false,"name":"regulation of snoRNA processing","termid":"GO:1902796"}


id: MOD:00246
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively crosslinks an L-cysteine residue and a glycine residue to form glycine thiazole-4-carboxylic acid.","definition_xrefs":["PubMed:8183941","ChEBI:21276","PubMed:8895467","RESID:AA0241"],"direct_ancestors":[{"relation_name":"is_a","term_name":"thiazole/thiazoline ring crosslinked residues","termid":"MOD:01420"},{"relation_name":"is_a","term_name":"didehydrogenated residue","termid":"MOD:01888"},{"relation_name":"is_a","term_name":"crosslinked glycine residue","termid":"MOD:02047"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glycine thiazole-4-carboxylic acid","synonyms":[{"name":"2-(aminomethyl)-1,3-thiazole-4-carboxylic acid","type":"exact"},{"name":"2-(azanylmethyl)-1,3-thiazole-4-carboxylic acid","type":"exact"},{"name":"CROSSLNK Thiazole-4-carboxylic acid (Gly-Cys)","type":"exact"},{"name":"glycine thiazole-4-carboxylic acid","type":"exact"}],"termid":"MOD:00246"}


id: PBO:0066769
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RN7SK pseudogene 67","termid":"PBO:0066769"}


id: GO:2000098
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of smooth muscle cell-matrix adhesion.","definition_xrefs":["GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of cell-matrix adhesion","termid":"GO:0001953"},{"relation_name":"is_a","term_name":"regulation of smooth muscle cell-matrix adhesion","termid":"GO:2000097"},{"relation_name":"negatively_regulates","term_name":"smooth muscle cell-matrix adhesion","termid":"GO:0061302"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"negatively_regulates","termid":"GO:0007155"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0007155"}],"interesting_parent_ids":["GO:0008150","GO:0007155"],"is_obsolete":false,"name":"negative regulation of smooth muscle cell-matrix adhesion","termid":"GO:2000098"}


id: PBO:0076690
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transcription elongation factor A like 7","termid":"PBO:0076690"}


id: MOD:00687
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that crosslinks two residues by formation of a thioether bond between a cysteine thiol and either an alkyl C as in lanthionine, or an aryl C as 2'-(S-cysteinyl)-L-histidine.","definition_xrefs":["PubMed:18688235"],"direct_ancestors":[{"relation_name":"is_a","term_name":"crosslinked residues","termid":"MOD:00033"},{"relation_name":"is_a","term_name":"crosslinked L-cysteine residue","termid":"MOD:02044"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"thioether crosslinked residues","termid":"MOD:00687"}


id: PBO:0109112
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"methyltransferase 2B, tRNA N3-cytidine","termid":"PBO:0109112"}


id: GO:1990502
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Steps required to transform a dense core granule generated at the trans-Golgi network into a fully formed and transmissible dense core granule. Dense core granule maturation proceeds through clathrin-mediated membrane remodeling events and is essential for efficient processing of cargo within dense core granules as well as for removing factors that might otherwise interfere with dense core granule trafficking and exocytosis.","definition_xrefs":["GOC:kmv","PMID:22654674"],"direct_ancestors":[{"relation_name":"is_a","term_name":"secretory granule maturation","termid":"GO:0061792"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"dense core granule maturation","synonyms":[{"name":"dense core vesicle maturation","type":"exact"}],"termid":"GO:1990502"}


id: SO:0001345
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"2prime_O_methyluridine is a modified uridine base feature.","direct_ancestors":[{"relation_name":"is_a","term_name":"modified_uridine","termid":"SO:0001277"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"two_prime_O_methyluridine","secondary_identifiers":["RNAMOD:053"],"synonyms":[{"name":"2'-O-methyluridine","type":"exact"},{"name":"Um","type":"exact"},{"name":"two prime O methyluridine","type":"exact"}],"termid":"SO:0001345"}


id: PBO:0045469
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dopamine receptor D5 pseudogene 1","termid":"PBO:0045469"}


id: GO:1901755
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of vitamin D3.","definition_xrefs":["Unipathway:UPA00955","GOC:TermGenie","GOC:yaf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"vitamin D biosynthetic process","termid":"GO:0042368"},{"relation_name":"is_a","term_name":"vitamin D3 metabolic process","termid":"GO:0070640"},{"relation_name":"is_a","term_name":"steroid hormone biosynthetic process","termid":"GO:0120178"},{"relation_name":"is_a","term_name":"secondary alcohol biosynthetic process","termid":"GO:1902653"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0006629"},{"rel_name":"is_a","termid":"GO:0006766"}],"interesting_parent_ids":["GO:0008150","GO:0044281","GO:0006629","GO:0006766"],"is_obsolete":false,"name":"vitamin D3 biosynthetic process","synonyms":[{"name":"calciol anabolism","type":"exact"},{"name":"calciol biosynthesis","type":"exact"},{"name":"calciol biosynthetic process","type":"exact"},{"name":"calciol formation","type":"exact"},{"name":"calciol synthesis","type":"exact"},{"name":"cholecalciferol biosynthesis","type":"exact"},{"name":"cholecalciferol biosynthetic process","type":"exact"},{"name":"vitamin D3 anabolism","type":"exact"},{"name":"vitamin D3 biosynthesis","type":"exact"},{"name":"vitamin D3 formation","type":"exact"},{"name":"vitamin D3 synthesis","type":"exact"}],"termid":"GO:1901755"}


id: PBO:0030089
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_growth_on_tetrapeptide_nitrogen_source","termid":"PBO:0030089"}


id: PBO:0048519
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glycerophosphodiester phosphodiesterase domain containing 2","termid":"PBO:0048519"}


id: GO:0098893
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The component of the postsynaptic endocytic zone membrane consisting of gene products and protein complexes that are loosely bound to one of its surfaces, but not integrated into the hydrophobic region.","definition_xrefs":["GOC:mf","GOC:autophagy"],"direct_ancestors":[{"relation_name":"is_a","term_name":"extrinsic component of postsynaptic membrane","termid":"GO:0098890"},{"relation_name":"part_of","term_name":"postsynaptic endocytic zone membrane","termid":"GO:0098844"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005886"}],"interesting_parent_ids":["GO:0005575","GO:0005886"],"is_obsolete":false,"name":"extrinsic component of postsynaptic endocytic zone","termid":"GO:0098893"}


id: PBO:0042543
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cyclin dependent kinase 8 pseudogene 2","termid":"PBO:0042543"}


id: PBO:0062687
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 51 subfamily A member 8 pseudogene","termid":"PBO:0062687"}


id: PR:O94536
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- ucp12 gene.","definition_xrefs":["UniProtKB:O94536","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ATP-dependent RNA helicase ucp12 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC895.09c","synonyms":[{"name":"Spom972h-ucp12","type":"exact"}],"termid":"PR:O94536"}


id: GO:0047790
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: creatinine + H2O = N-methylhydantoin + NH3.","definition_xrefs":["MetaCyc:CREATININE-DEAMINASE-RXN","EC:3.5.4.21"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines","termid":"GO:0016814"},{"relation_name":"is_a","term_name":"deaminase activity","termid":"GO:0019239"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016810"},{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016810","GO:0003674","GO:0016787","GO:0003824"],"is_obsolete":false,"name":"creatinine deaminase activity","secondary_identifiers":["RHEA:12681"],"synonyms":[{"name":"creatinine desiminase activity","type":"related"},{"name":"creatinine hydrolase","type":"broad"},{"name":"creatinine iminohydrolase activity","type":"related"}],"termid":"GO:0047790"}


id: GO:0002404
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process of apical-to-basolateral delivery of soluble and particulate antigens to underlying mucosal-associated lymphoid tissue.","definition_xrefs":["PMID:15681746","PMID:12843411","GOC:jal","PMID:11896763"],"direct_ancestors":[{"relation_name":"is_a","term_name":"immune system process","termid":"GO:0002376"},{"relation_name":"part_of","term_name":"mucosal immune response","termid":"GO:0002385"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"antigen sampling in mucosal-associated lymphoid tissue","synonyms":[{"name":"antigen sampling in MALT","type":"exact"},{"name":"antigen transport in MALT","type":"related"},{"name":"antigen transport in mucosal-associated lymphoid tissue","type":"related"}],"termid":"GO:0002404"}


id: PBO:0057556
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 671","termid":"PBO:0057556"}


id: GO:0051983
data:
  {"annotated_genes":["SJAG_03327","SJAG_04126","SJAG_04597","SJAG_01837","SJAG_02169","SJAG_01679","SJAG_05329","SJAG_04699","SJAG_03126","SJAG_02451","SJAG_00460","SJAG_04573","SJAG_02104","SJAG_00244","SJAG_04853","SJAG_03681","SJAG_03048","SJAG_04999","SJAG_03575","SJAG_02332","SJAG_00145","SJAG_01297","SJAG_01805","SJAG_02336","SJAG_00883","SJAG_04280","SJAG_01082","SJAG_04259","SJAG_02498","SJAG_00082","SJAG_04457","SJAG_04464","SJAG_04968","SJAG_04140","SJAG_05290","SJAG_01330","SJAG_00666","SJAG_01956","SJAG_04884","SJAG_03353","SJAG_02380","SJAG_01515","SJAG_03350"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[112062,86924,103408,109966,100069,108140,104435,95750,110441],"is_not":false,"rel_names":["positively_regulates","regulates","is_a","negatively_regulates"],"summary":null,"term":"GO:1902426"},{"annotations":[102484,110667],"is_not":false,"rel_names":["is_a","regulates","negatively_regulates"],"summary":null,"term":"GO:1905318"},{"annotations":[97964,102485,112832],"is_not":false,"rel_names":["negatively_regulates","is_a","regulates"],"summary":null,"term":"GO:0033316"},{"annotations":[96297,94866],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1990949"},{"annotations":[98458,96298],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1990950"},{"annotations":[98003,86552,109311],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0007091"},{"annotations":[102486,106096,97965,111710,110670,86926,95599,109970,112835],"is_not":false,"rel_names":["negatively_regulates","regulates","is_a"],"summary":null,"term":"GO:0007094"},{"annotations":[98534],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1902424"},{"annotations":[94867],"is_not":false,"rel_names":["is_a","regulates","negatively_regulates"],"summary":null,"term":"GO:1902103"},{"annotations":[111711,102487],"is_not":false,"rel_names":["negatively_regulates","is_a","regulates"],"summary":null,"term":"GO:0045841"},{"annotations":[99454],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:2000816"},{"annotations":[90377],"is_not":false,"rel_names":["negatively_regulates","positively_regulates","is_a","regulates"],"summary":null,"term":"GO:0140499"},{"annotations":[98542],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:1902845"},{"annotations":[86205,101343,108141,112172],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1902425"},{"annotations":[109971],"is_not":false,"rel_names":["is_a","positively_regulates","regulates"],"summary":null,"term":"GO:1905326"},{"annotations":[91338],"is_not":false,"rel_names":["is_a","regulates","positively_regulates"],"summary":null,"term":"GO:1905191"},{"annotations":[112839],"is_not":false,"rel_names":["regulates","is_a","positively_regulates"],"summary":null,"term":"GO:0090267"},{"annotations":[89990,96299,110442,110933,98278,93875,107553,98552],"is_not":false,"rel_names":["is_a","positively_regulates","regulates"],"summary":null,"term":"GO:0045842"},{"annotations":[112841],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1905824"},{"annotations":[98553,107382,86209,89991,112842],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0140429"},{"annotations":[93876,95773],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1901970"},{"annotations":[86210,90591],"is_not":false,"rel_names":["is_a","part_of"],"summary":null,"term":"GO:1902846"},{"annotations":[107613],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0110161"},{"annotations":[90069,106372],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0090006"},{"annotations":[98563],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0062123"},{"annotations":[97499],"is_not":false,"rel_names":["regulates","is_a"],"summary":null,"term":"GO:1905325"},{"annotations":[90378],"is_not":false,"rel_names":["is_a","regulates"],"summary":null,"term":"GO:0090266"},{"annotations":[112844],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0033047"},{"annotations":[107198],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0032888"},{"annotations":[111213],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0110162"}]},"cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of chromosome segregation, the process in which genetic material, in the form of chromosomes, is organized and then physically separated and apportioned to two or more sets.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of cell cycle process","termid":"GO:0010564"},{"relation_name":"regulates","term_name":"chromosome 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of chromosome segregation","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0051983","terms_by_termid":{"GO:0007091":null,"GO:0007094":null,"GO:0032888":null,"GO:0033047":null,"GO:0033316":null,"GO:0045841":null,"GO:0045842":null,"GO:0062123":null,"GO:0090006":null,"GO:0090266":null,"GO:0090267":null,"GO:0110161":null,"GO:0110162":null,"GO:0140429":null,"GO:0140499":null,"GO:1901970":null,"GO:1902103":null,"GO:1902424":null,"GO:1902425":null,"GO:1902426":null,"GO:1902845":null,"GO:1902846":null,"GO:1905191":null,"GO:1905318":null,"GO:1905325":null,"GO:1905326":null,"GO:1905824":null,"GO:1990949":null,"GO:1990950":null,"GO:2000816":null}}


id: PBO:0080948
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger BED-type containing 3","termid":"PBO:0080948"}


id: GO:0044326
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"Part of the dendritic spine that connects the dendritic shaft to the head of the dendritic spine.","definition_xrefs":["GOC:nln"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular anatomical entity","termid":"GO:0110165"},{"relation_name":"part_of","term_name":"dendritic spine","termid":"GO:0043197"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"dendritic spine neck","secondary_identifiers":["NIF_Subcellular:sao1642908940"],"synonyms":[{"name":"neck","type":"broad"},{"name":"pedicle","type":"related"},{"name":"spine neck","type":"broad"}],"termid":"GO:0044326"}


id: PBO:0005030
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA-binding protein Mde7","termid":"PBO:0005030"}


id: PBO:0064068
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"piwi-interacting RNA cluster 102","termid":"PBO:0064068"}


id: GO:0019283
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of L-methionine from other compounds, including O-phospho-L-homoserine and cystathionine.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular modified amino acid metabolic process","termid":"GO:0006575"},{"relation_name":"is_a","term_name":"phosphate-containing compound metabolic process","termid":"GO:0006796"},{"relation_name":"is_a","term_name":"organophosphate metabolic process","termid":"GO:0019637"},{"relation_name":"is_a","term_name":"'de novo' L-methionine biosynthetic process","termid":"GO:0071266"},{"relation_name":"is_a","term_name":"non-proteinogenic amino acid metabolic process","termid":"GO:0170041"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006790"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0006520"}],"interesting_parent_ids":["GO:0006790","GO:0044281","GO:0006520","GO:0008150"],"is_obsolete":false,"name":"L-methionine biosynthetic process from O-phospho-L-homoserine and cystathionine","synonyms":[{"name":"L-methionine anabolism from O-phospho-L-homoserine and cystathionine","type":"exact"},{"name":"L-methionine formation from O-phospho-L-homoserine and cystathionine","type":"exact"},{"name":"L-methionine synthesis from O-phospho-L-homoserine and cystathionine","type":"exact"},{"name":"methionine biosynthetic process from O-phospho-L-homoserine and cystathionine","type":"exact"}],"termid":"GO:0019283"}


id: PBO:0030493
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-coenzyme_Q10_absent_from_cell","termid":"PBO:0030493"}


id: MOD:01758
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively replaces an O3-hydrogen atom of a threonine residue with the Proteome Sciences TMT6plex-130 reporter+balance group.","definition_xrefs":["PubMed:18688235"],"direct_ancestors":[{"relation_name":"is_a","term_name":"TMT6plex reporter+balance reagent O-acylated residue","termid":"MOD:01719"},{"relation_name":"is_a","term_name":"TMT6plex-130 reporter+balance reagent acylated residue","termid":"MOD:01752"},{"relation_name":"is_a","term_name":"O3-acylated L-threonine","termid":"MOD:02004"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:00649"}],"interesting_parent_ids":["MOD:00649"],"is_obsolete":false,"name":"TMT6plex-130 reporter+balance reagent O3-acylated threonine","synonyms":[{"name":"3-[(2,6-dimethylpiperidin-1-yl)acetyl]amino)propanoyl","type":"exact"},{"name":"Sixplex Tandem Mass Tag(TM)","type":"related"},{"name":"TMT6plex","type":"related"}],"termid":"MOD:01758"}


id: SO:0001949
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A kind of histone modification site, whereby the 3nd residue (an arginine), from the start of the H4 protein is di-methylated.","definition_xrefs":["EBI:nj"],"direct_ancestors":[{"relation_name":"is_a","term_name":"histone_methylation_site","termid":"SO:0001701"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"SO:0000839"}],"interesting_parent_ids":["SO:0000839"],"is_obsolete":false,"name":"H4R3_dimethylation_site","synonyms":[{"name":"H4R3 dimethylation site","type":"exact"},{"name":"H4R3me2","type":"exact"}],"termid":"SO:0001949"}


id: GO:0052568
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of phytoalexins produced as part of the defense response of the symbiont organism. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction.","definition_xrefs":["GOC:mtg_pamgo"],"gene_count":0,"genotype_count":0,"name":"obsolete response to symbiont phytoalexin production (obsolete GO:0052568)","synonyms":[{"name":"response to symbiont phytoalexin production","type":"exact"}],"termid":"GO:0052568"}


id: GO:0099003
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any vesicle-mediated transport that occurs in a synapse.","definition_xrefs":["GOC:dos"],"direct_ancestors":[{"relation_name":"is_a","term_name":"vesicle-mediated transport","termid":"GO:0016192"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0016192"},{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0008150","GO:0006810","GO:0051179","GO:0016192"],"is_obsolete":false,"name":"vesicle-mediated transport in synapse","termid":"GO:0099003"}


id: GO:0140907
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: R-CH + a halogen + FADH2 + O2 = R-C-halogen + FAD + H2O.","definition_xrefs":["PMID:28466644","PMID:34368824"],"direct_ancestors":[{"relation_name":"is_a","term_name":"halogenase activity","termid":"GO:0140906"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0016491","GO:0003824"],"is_obsolete":false,"name":"flavin-dependent halogenase activity","termid":"GO:0140907"}


id: PBO:0002497
data:
  {"annotation_feature_type":"gene","cv_name":"subunit_composition","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"octomeric","termid":"PBO:0002497"}


id: MOD:00861
data:
  {"annotated_genes":["SJAG_02763","SJAG_02592","SJAG_04551"],"annotation_feature_type":"gene","cv_annotations":{"PSI-MOD":[{"annotations":[115443,115413,115414,115441,115442,115440],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MOD:00046"},{"annotations":[115330,115240,115328,115329,115274],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MOD:00696"}]},"cv_name":"PSI-MOD","definition":"A protein modification that produces an amino acid residue containing a phosphorus atom.","definition_xrefs":["PubMed:18688235"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein modification categorized by chemical process","termid":"MOD:01156"}],"gene_count":3,"genes_by_uniquename":{"SJAG_02592":null,"SJAG_02763":null,"SJAG_04551":null},"genotype_count":0,"is_obsolete":false,"name":"phosphorus containing modified residue","references_by_uniquename":{"PMID:26774782":null,"PMID:31150379":null,"PMID:32915139":null,"PMID:33791858":null,"PMID:34198697":null},"termid":"MOD:00861","terms_by_termid":{"GO:0034599":null,"GO:0034605":null,"GO:0036460":null,"GO:0042149":null,"GO:0071475":null,"GO:0120306":null,"GO:1904547":null,"MOD:00046":null,"MOD:00696":null}}


id: PBO:0071196
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L23a pseudogene 37","termid":"PBO:0071196"}


id: FYPO:0007115
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to the medial cortical nodes is abolished, and the protein is present in the cytoplasm instead, during interphase of the mitotic cell cycle.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abolished protein localization to medial cortical node, with protein mislocalized to cytoplasm","termid":"FYPO:0004735"},{"relation_name":"is_a","term_name":"abolished protein localization to medial cortical node during mitotic interphase","termid":"FYPO:0007139"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"has_part","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"has_part","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0000138"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0000138","FYPO:0000002","FYPO:0001320","FYPO:0005447","FYPO:0001985"],"is_obsolete":false,"name":"abolished protein localization to medial cortical node, with protein mislocalized to cytoplasm during mitotic interphase","synonyms":[{"name":"abolished protein localisation to medial cortical node, with protein mislocalised to cytoplasm during mitotic interphase","type":"exact"},{"name":"abolished protein localization to cortical medial dot, with protein mislocalized to cytoplasm during mitotic interphase","type":"exact"},{"name":"abolished protein localization to cytokinetic nodes, with protein mislocalized to cytoplasm during mitotic interphase","type":"related"},{"name":"abolished protein localization to medial cortical node, with protein mislocalized to cytoplasm, during interphase during vegetative growth","type":"exact"},{"name":"abolished protein localization to medial cortical node, with protein mislocalized to cytoplasm, during interphase of mitotic cell cycle","type":"exact"},{"name":"abolished protein localization to medial cortical nodes, with protein mislocalized to cytoplasm during mitotic interphase","type":"exact"},{"name":"abolished protein recruitment to medial cortical node, with protein mislocalized to cytoplasm during mitotic interphase","type":"related"},{"name":"protein localization to medial cortical node abolished, with protein mislocalized to cytoplasm during mitotic interphase","type":"exact"}],"termid":"FYPO:0007115"}


id: GO:0102930
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: geranyl diphosphate + 4-hydroxybenzoic acid = 3-geranyl-4-hydroxybenzoate + diphosphoric acid.","definition_xrefs":["GOC:pz","RHEA:27854"],"direct_ancestors":[{"relation_name":"is_a","term_name":"transferase activity, transferring alkyl or aryl (other than methyl) groups","termid":"GO:0016765"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016765"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016740"}],"interesting_parent_ids":["GO:0003674","GO:0016740","GO:0003824","GO:0016765"],"is_obsolete":false,"name":"4-hydroxybenzoate geranyltransferase activity","secondary_identifiers":["EC:2.5.1.93","MetaCyc:RXN-8920"],"termid":"GO:0102930"}


id: PBO:0083236
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Dubious open reading frame; unlikely to encode a functional protein, based on available experimental and comparative sequence data; deletion mutation phenotype is likely due to the overlapping verified ORF SKI8/YGL213C","termid":"PBO:0083236"}


id: GO:0001732
data:
  {"annotated_genes":["SJAG_04981","SJAG_02995","SJAG_02628","SJAG_04900","SJAG_02390","SJAG_02376","SJAG_04744","SJAG_03472","SJAG_03147","SJAG_04891","SJAG_02164","SJAG_00662"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[86150,90964,92049,93033,93910,93970,95098,96263,101487,101779,106886,107518],"is_not":false,"summary":null,"term":"GO:0001732"}]},"cv_name":"biological_process","definition":"Joining of the large ribosomal subunit with the translation preinitiation complex, with release of IF2/eIF2 and IF3/eIF3 or IF5B/eIF5B. This leaves the functional ribosome at the AUG, with the methionyl/formyl-methionyl-tRNA positioned at the P site.","definition_xrefs":["GOC:hjd","PMID:29735639"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein-RNA complex assembly","termid":"GO:0022618"},{"relation_name":"part_of","term_name":"cytoplasmic translational initiation","termid":"GO:0002183"}],"gene_count":12,"genes_by_uniquename":{"SJAG_00662":null,"SJAG_02164":null,"SJAG_02376":null,"SJAG_02390":null,"SJAG_02628":null,"SJAG_02995":null,"SJAG_03147":null,"SJAG_03472":null,"SJAG_04744":null,"SJAG_04891":null,"SJAG_04900":null,"SJAG_04981":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0002181"},{"rel_name":"part_of","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0065003"},{"rel_name":"part_of","termid":"GO:0044085"}],"interesting_parent_ids":["GO:0065003","GO:0002181","GO:0008150","GO:0044085","GO:0010467"],"is_obsolete":false,"name":"formation of cytoplasmic translation initiation complex","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"cytoplasmic translation initiation complex assembly","type":"exact"},{"name":"formation of translation initiation complex","type":"broad"},{"name":"translation initiation complex assembly","type":"broad"}],"termid":"GO:0001732","terms_by_termid":{"GO:0001732":null}}


id: GO:0098530
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that increases the rate, frequency or extent of strand invasion. Strand invasion is the process in which the nucleoprotein complex (composed of the broken single-strand DNA and the recombinase) searches and identifies a region of homology in intact duplex DNA. The broken single-strand DNA displaces the like strand and forms Watson-Crick base pairs with its complement, forming a duplex in which each strand is from one of the two recombining DNA molecules.","definition_xrefs":["GOC:dph","GOC:elh","GOC:tb","GOC:dos"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of DNA metabolic process","termid":"GO:0051054"},{"relation_name":"is_a","term_name":"regulation of strand invasion","termid":"GO:0060542"},{"relation_name":"positively_regulates","term_name":"DNA strand invasion","termid":"GO:0042148"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0006259"},{"rel_name":"positively_regulates","termid":"GO:0006259"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006259","GO:0008150"],"is_obsolete":false,"name":"positive regulation of strand invasion","synonyms":[{"name":"positive regulation of D-loop biosynthesis","type":"related"},{"name":"positive regulation of D-loop formation","type":"related"},{"name":"positive regulation of Rad51-mediated strand invasion","type":"exact"}],"termid":"GO:0098530"}


id: FYPO:0001210
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of Glc2Man9GlcNAc2 measured in a cell is too low to detect. Glc2Man9GlcNAc2 is an N-glycan that is involved in post-translational modification of proteins, and consists of a branched ten-membered mannooligosaccharide containing two D-glucose residues, nine D-mannosyl residues and two N-acetylglucosamine residues.","definition_xrefs":["CHEBI:59082","PMID:9813085","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"polysaccharide absent from cell","termid":"FYPO:0001209"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001320","FYPO:0001985"],"is_obsolete":false,"name":"Glc2Man9GlcNAc absent from cell","synonyms":[{"name":"Glc2Man9GlcNAc absent from cell during mitotic cell cycle","type":"related"},{"name":"Glc2Man9GlcNAc absent from cell during vegetative growth","type":"exact"},{"name":"Glc2Man9GlcNAc2 absent from cell","type":"exact"},{"name":"absent Glc2Man9GlcNAc","type":"exact"}],"termid":"FYPO:0001210"}


id: PBO:0069383
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 643, pseudogene","termid":"PBO:0069383"}


id: GO:0048139
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Formation of a single follicular epithelium around the germ-line derived cells of a cyst formed in the female gonad.","definition_xrefs":["GOC:jid"],"direct_ancestors":[{"relation_name":"is_a","term_name":"germ-line cyst encapsulation","termid":"GO:0048138"},{"relation_name":"part_of","term_name":"female gamete generation","termid":"GO:0007292"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"female germ-line cyst encapsulation","termid":"GO:0048139"}


id: PBO:0016956
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Schizosaccharomyces specific protein New9","termid":"PBO:0016956"}


id: PBO:0017897
data:
  {"annotation_feature_type":"gene","cv_name":"complementation","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"functionally complemented by human EIF3E","termid":"PBO:0017897"}


id: PBO:0047718
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"flavin containing dimethylaniline monoxygenase 9, pseudogene","termid":"PBO:0047718"}


id: GO:0006948
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process of syncytia-forming cell-cell fusion, caused by a virus.","definition_xrefs":["ISBN:0781718325"],"direct_ancestors":[{"relation_name":"is_a","term_name":"modulation by virus of host cellular process","termid":"GO:0019054"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"induction by virus of host cell-cell fusion","synonyms":[{"name":"induction by virus of cell-cell fusion in host","type":"exact"},{"name":"viral-induced cell-cell fusion","type":"exact"},{"name":"viral-induced host cell-cell fusion","type":"exact"},{"name":"viral-induced membrane fusion","type":"narrow"}],"termid":"GO:0006948"}


id: PATO:0001496
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A reproductive quality inhering in the young of an animal by virtue of the bearer's being cared for at one time.","definition_xrefs":["WordNet:WordNet"],"direct_ancestors":[{"relation_name":"is_a","term_name":"reproductive quality","termid":"PATO:0001434"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"brood quality","termid":"PATO:0001496"}


id: PBO:0061649
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nudix hydrolase 21","termid":"PBO:0061649"}


id: PBO:0041089
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"bombesin receptor subtype 3","termid":"PBO:0041089"}


id: PBO:0090693
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DNA-binding transcription factor Adn3","termid":"PBO:0090693"}


id: PBO:0062951
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PABIR family member 2","termid":"PBO:0062951"}


id: PBO:0074356
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SMC3 pseudogene 1","termid":"PBO:0074356"}


id: PBO:0073223
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"semaphorin 6D","termid":"PBO:0073223"}


id: GO:0097327
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an antineoplastic agent stimulus. An antineoplastic agent is a substance that inhibits or prevents the proliferation of neoplasms.","definition_xrefs":["GOC:pr"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to chemical","termid":"GO:0042221"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"response to antineoplastic agent","termid":"GO:0097327"}


id: PBO:0060737
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NADH:ubiquinone oxidoreductase complex assembly factor 4 pseudogene 2","termid":"PBO:0060737"}


id: PBO:0090801
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"WD repeat protein Spo14","termid":"PBO:0090801"}


id: FYPO:0000087
data:
  {"alleles_by_uniquename":{"SJAG_04312:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_04312","name":"pka1delta","uniquename":"SJAG_04312:allele-1"}},"annotation_feature_type":"genotype","cv_annotations":{"single_locus_phenotype":[{"annotations":[115431],"is_not":false,"summary":null,"term":"FYPO:0000087"}]},"cv_name":"fission_yeast_phenotype","definition":"A phenotype observed in the vegetative growth phase of the life cycle in which cells show increased sensitivity to hydrogen peroxide. Cells stop growing (and may die) at a concentration of hydrogen peroxide that allows wild type cells to grow.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"sensitive to DNA damaging agents","termid":"FYPO:0000266"},{"relation_name":"is_a","term_name":"sensitive to oxidative stress","termid":"FYPO:0000726"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04312":null},"genotype_count":1,"genotypes_by_uniquename":{"pka1delta":{"display_name":"pka1delta","display_uniquename":"pka1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04312:allele-1","expression":"Null"}]}]}},"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000139"},{"rel_name":"is_a","termid":"FYPO:0002683"},{"rel_name":"is_a","termid":"FYPO:0000003"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000003","FYPO:0000139","FYPO:0005447","FYPO:0002683"],"is_obsolete":false,"name":"sensitive to hydrogen peroxide","references_by_uniquename":{"PMID:27678009":null},"single_locus_annotated_genes":["SJAG_04312"],"single_locus_genotype_uniquenames":["pka1delta"],"synonyms":[{"name":"hypersensitive to hydrogen peroxide","type":"exact"},{"name":"sensitive to H2O2","type":"exact"},{"name":"sensitive to hydrogen peroxide during mitotic cell cycle","type":"related"},{"name":"sensitive to hydrogen peroxide during vegetative growth","type":"exact"}],"termid":"FYPO:0000087","terms_by_termid":{"FYPO:0000087":null}}


id: PBO:0073076
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SDE2 telomere maintenance homolog","termid":"PBO:0073076"}


id: PBO:0057577
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 874","termid":"PBO:0057577"}


id: PBO:0044596
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DDB1 and CUL4 associated factor 4 like 2","termid":"PBO:0044596"}


id: SO:0002200
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A (unitary) pseudogene that is stable in the population but importantly it has a functional alternative allele also in the population. i.e., one strain may have the gene, another strain may have the pseudogene. MHC haplotypes have allelic pseudogenes.","direct_ancestors":[{"relation_name":"is_a","term_name":"pseudogenic_tRNA","termid":"SO:0000778"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"allelic_pseudogenic_tRNA","synonyms":[{"name":"INSDC_feature:tRNA","type":"exact"},{"name":"INSDC_qualifier:allelic","type":"exact"},{"name":"allelic pseudogenic tRNA","type":"exact"}],"termid":"SO:0002200"}


id: PBO:0004496
data:
  {"annotation_feature_type":"gene","cv_name":"EC numbers","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"2.7.1.33","termid":"PBO:0004496"}


id: GO:0007413
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The collection of axons into a bundle of rods, known as a fascicle.","definition_xrefs":["GOC:dgh"],"direct_ancestors":[{"relation_name":"is_a","term_name":"neuron recognition","termid":"GO:0008038"},{"relation_name":"is_a","term_name":"neuron projection fasciculation","termid":"GO:0106030"},{"relation_name":"part_of","term_name":"axon development","termid":"GO:0061564"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"axonal fasciculation","synonyms":[{"name":"fasciculation of neuron","type":"related"}],"termid":"GO:0007413"}


id: PBO:0064887
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protein phosphatase 2 regulatory subunit Bbeta","termid":"PBO:0064887"}


id: GO:0042892
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The directed movement of chloramphenicol, a broad-spectrum antibiotic that inhibits bacterial protein synthesis, across a lipid bilayer, from one side of a membrane to the other.","definition_xrefs":["PMID:29150447"],"direct_ancestors":[{"relation_name":"is_a","term_name":"polyol transmembrane transport","termid":"GO:0015791"},{"relation_name":"is_a","term_name":"amide transport","termid":"GO:0042886"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0055085"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0051179"}],"interesting_parent_ids":["GO:0008150","GO:0006810","GO:0051179","GO:0055085"],"is_obsolete":false,"name":"chloramphenicol transmembrane transport","synonyms":[{"name":"chloramphenicol transport","type":"broad"}],"termid":"GO:0042892"}


id: PBO:0076328
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"synaptophysin like 1 pseudogene 2","termid":"PBO:0076328"}


id: PBO:0059572
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"metallothionein 1X","termid":"PBO:0059572"}


id: PBO:0065678
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protein tyrosine phosphatase receptor type Z2","termid":"PBO:0065678"}


id: FYPO:0005772
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which histone H2A phosphorylation occurs to a greater extent than normal at tRNA genes. All histone H2A phosphorylation may be affected, or phosphorylation of specific sites on histone H2A may be increased.","definition_xrefs":["PomBase:mah","PMID:27611590"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased histone H2A phosphorylation during vegetative growth","termid":"FYPO:0002596"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0002274"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0002494"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000002","FYPO:0002274","FYPO:0001320","FYPO:0005447","FYPO:0002494"],"is_obsolete":false,"name":"increased histone H2A phosphorylation at tRNA genes during vegetative growth","synonyms":[{"name":"increased histone H2A phosphorylation at tRNA genes during mitotic cell cycle","type":"related"},{"name":"increased histone H2A phosphorylation at transfer RNA genes during vegetative growth","type":"exact"}],"termid":"FYPO:0005772"}


id: GO:0033440
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"A triplet codon-amino acid adaptor activity that recognizes an ACG codon.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"triplet codon-amino acid adaptor activity","termid":"GO:0030533"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0060090"},{"rel_name":"is_a","termid":"GO:0003723"},{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0060090","GO:0003723","GO:0005488","GO:0003674"],"is_obsolete":false,"name":"ACG codon-amino acid adaptor activity","synonyms":[{"name":"threonine tRNA","type":"related"}],"termid":"GO:0033440"}


id: PATO:0001689
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"An elevation which is relatively low.","definition_xrefs":["PATOC:GVG"],"direct_ancestors":[{"relation_name":"decreased_in_magnitude_relative_to","term_name":"normal","termid":"PATO:0000461"},{"relation_name":"is_a","term_name":"decreased position","termid":"PATO:0001476"},{"relation_name":"is_a","term_name":"elevation","termid":"PATO:0001687"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"decreased elevation","synonyms":[{"name":"low elevation","type":"exact"}],"termid":"PATO:0001689"}


id: PBO:0071765
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein lateral stalk subunit P1 pseudogene 12","termid":"PBO:0071765"}


id: PBO:0070973
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L18 pseudogene 11","termid":"PBO:0070973"}


id: GO:0018112
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: L-proline = D-proline.","definition_xrefs":["EC:5.1.1.4","RHEA:10680"],"direct_ancestors":[{"relation_name":"is_a","term_name":"amino-acid racemase activity","termid":"GO:0047661"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016853"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003824","GO:0016853","GO:0003674"],"is_obsolete":false,"name":"proline racemase activity","secondary_identifiers":["KEGG_REACTION:R01255","MetaCyc:PROLINE-RACEMASE-RXN"],"termid":"GO:0018112"}


id: PBO:0058292
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 4666b","termid":"PBO:0058292"}


id: GO:0061735
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A positive regulation of the macromitophagy pathway that is triggered by mitochondrial depolarization and requires the function of a DNM1L-family molecule.","definition_xrefs":["GOC:PARL","GOC:autophagy","GOC:dph","GOC:pad","PMID:25349190"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of mitophagy in response to mitochondrial depolarization","termid":"GO:0098779"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0044248"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0006914"},{"rel_name":"positively_regulates","termid":"GO:0006914"},{"rel_name":"regulates","termid":"GO:0007005"},{"rel_name":"positively_regulates","termid":"GO:0044248"},{"rel_name":"positively_regulates","termid":"GO:0007005"}],"interesting_parent_ids":["GO:0006914","GO:0007005","GO:0044248","GO:0008150"],"is_obsolete":false,"name":"DNM1L-mediated stimulation of mitophagy in response to mitochondrial depolarization","synonyms":[{"name":"dynamin-like protein-mediated stimulation of mitophagy in response to mitochondrial depolarization","type":"exact"}],"termid":"GO:0061735"}


id: PBO:0091990
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"wtf antidote-like meiotic drive suppressor Wtf25","termid":"PBO:0091990"}


id: PBO:0002661
data:
  {"annotation_feature_type":"gene","cv_name":"name_description","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Dynein Intermediate light chain-Like","termid":"PBO:0002661"}


id: PBO:0049017
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glycoprotein M6B pseudogene 2","termid":"PBO:0049017"}


id: GO:0004119
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: nucleoside 3',5'-cyclic phosphate + H2O = nucleoside 5'-phosphate; catalytic activity is decreased in the presence of cGMP.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"3',5'-cyclic-nucleotide phosphodiesterase activity","termid":"GO:0004114"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016788"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0016788","GO:0003824","GO:0016787"],"is_obsolete":false,"name":"cGMP-inhibited cyclic-nucleotide phosphodiesterase activity","termid":"GO:0004119"}


id: GO:0006589
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of octopamine, 1-(p-hydroxyphenyl)-2-aminoethanol. The D enantiomer is about one-tenth as active as norepinephrine and is found in the salivary glands of Octopus and Eledone species.","definition_xrefs":["ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"biogenic amine biosynthetic process","termid":"GO:0042401"},{"relation_name":"is_a","term_name":"alcohol biosynthetic process","termid":"GO:0046165"},{"relation_name":"is_a","term_name":"phenol-containing compound biosynthetic process","termid":"GO:0046189"},{"relation_name":"is_a","term_name":"octopamine metabolic process","termid":"GO:0046333"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0044281"],"is_obsolete":false,"name":"octopamine biosynthetic process","synonyms":[{"name":"octopamine anabolism","type":"exact"},{"name":"octopamine biosynthesis","type":"exact"},{"name":"octopamine formation","type":"exact"},{"name":"octopamine synthesis","type":"exact"}],"termid":"GO:0006589"}


id: MOD:01788
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an N-terminal L-histidine residue to histidine immonium ion.","definition_xrefs":["PubMed:18688235","PubMed:17074506"],"direct_ancestors":[{"relation_name":"is_a","term_name":"modified L-histidine residue","termid":"MOD:00909"},{"relation_name":"is_a","term_name":"residue reporter fragment","termid":"MOD:01527"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"histidine immonium ion","synonyms":[{"name":"2-(1H-imidazolyl)ethaniminium","type":"exact"}],"termid":"MOD:01788"}


id: GO:0000474
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process involved in the maturation of a precursor Small SubUnit (SSU) ribosomal RNA (rRNA) molecule into a mature SSU-rRNA molecule from the pre-rRNA molecule originally produced as a tetracistronic rRNA transcript that contains the Small Subunit (SSU) rRNA, 5.8 S rRNA, 2S rRNA, and Large Subunit (LSU) in that order from 5' to 3' along the primary transcript.","definition_xrefs":["GOC:curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"maturation of SSU-rRNA","termid":"GO:0030490"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0010467"},{"rel_name":"part_of","termid":"GO:0044085"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0042254"}],"interesting_parent_ids":["GO:0008150","GO:0010467","GO:0044085","GO:0042254"],"is_obsolete":false,"name":"maturation of SSU-rRNA from tetracistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, 2S rRNA, LSU-rRNA)","termid":"GO:0000474"}


id: GO:0004128
data:
  {"annotated_genes":["SJAG_02794","SJAG_00235","SJAG_02395"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[76806,88413,112876,114897],"is_not":false,"summary":null,"term":"GO:0004128"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: NAD(P)H + H+ + 2 ferricytochrome b(5) = NAD(P)+ + 2 ferrocytochrome b(5).","definition_xrefs":["EC:1.6.2.2","ISBN:0198547684"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on NAD(P)H, heme protein as acceptor","termid":"GO:0016653"}],"gene_count":3,"genes_by_uniquename":{"SJAG_00235":null,"SJAG_02395":null,"SJAG_02794":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003824","GO:0016491","GO:0003674"],"is_obsolete":false,"name":"cytochrome-b5 reductase activity, acting on NAD(P)H","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"secondary_identifiers":["MetaCyc:CYTOCHROME-B5-REDUCTASE-RXN","Reactome:R-HSA-198824","RHEA:46680","Reactome:R-HSA-6806831"],"synonyms":[{"name":"NADH 5alpha-reductase activity","type":"related"},{"name":"NADH-cytochrome b5 reductase activity","type":"related"},{"name":"NADH-cytochrome-b5 reductase activity","type":"related"},{"name":"NADH-ferricytochrome b5 oxidoreductase activity","type":"related"},{"name":"NADH:ferricytochrome-b5 oxidoreductase activity","type":"related"},{"name":"cytochrome b5 reductase activity","type":"related"},{"name":"dihydronicotinamide adenine dinucleotide-cytochrome b5 reductase activity","type":"related"},{"name":"reduced nicotinamide adeninedinucleotide-cytochrome b5 reductase activity","type":"related"}],"termid":"GO:0004128","terms_by_termid":{"GO:0004128":null}}


id: GO:0001972
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to retinoic acid, 3,7-dimethyl-9-(2,6,-trimethyl-1-cyclohexen-1-yl)-2,4,6,8-nonatetraenoic acid.","definition_xrefs":["GOC:hjd"],"direct_ancestors":[{"relation_name":"is_a","term_name":"retinoid binding","termid":"GO:0005501"},{"relation_name":"is_a","term_name":"monocarboxylic acid binding","termid":"GO:0033293"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0008289"}],"interesting_parent_ids":["GO:0003674","GO:0005488","GO:0008289"],"is_obsolete":false,"name":"retinoic acid binding","termid":"GO:0001972"}


id: PBO:0083948
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Gamma subunit of the F1 sector of mitochondrial F1F0 ATP synthase; F1F0 ATP synthase is a large, evolutionarily conserved enzyme complex required for ATP synthesis","termid":"PBO:0083948"}


id: PBO:0070022
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 1319, pseudogene","termid":"PBO:0070022"}


id: PBO:0026995
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_protein_level_during_meiosis_I","termid":"PBO:0026995"}


id: PBO:0067734
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 5S ribosomal pseudogene 33","termid":"PBO:0067734"}


id: PBO:0074536
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small NF90 (ILF3) associated RNA I","termid":"PBO:0074536"}


id: PR:Q12705
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- ppb1 gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q12705"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"serine/threonine-protein phosphatase 2B catalytic subunit (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBP4H10.04","synonyms":[{"name":"Spom972h-ppb1","type":"exact"}],"termid":"PR:Q12705"}


id: FYPO:0007853
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype in which the localization of a protein to the centromere of a chromosome is normal (i.e. indistinguishable from wild type).","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal protein localization to chromosome","termid":"FYPO:0004997"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000138"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0000138","FYPO:0000257"],"is_obsolete":false,"name":"normal protein localization to centromere","synonyms":[{"name":"normal protein localisation to centromere","type":"exact"},{"name":"normal protein localisation to chromosome, centromeric region","type":"exact"},{"name":"normal protein localization to chromosome, centric region","type":"exact"},{"name":"normal protein localization to chromosome, centromeric region","type":"exact"}],"termid":"FYPO:0007853"}


id: PBO:0049894
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"HECT and RLD domain containing E3 ubiquitin protein ligase 4","termid":"PBO:0049894"}


id: PBO:0029821
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-inviable_microcolony,_swollen_cells,_abnormal_cell_shape_(obsolete_FYPO:0002416)","termid":"PBO:0029821"}


id: GO:1903171
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process involved in the maintenance of an internal steady state of carbon dioxide within an organism or cell.","definition_xrefs":["GOC:TermGenie","PMID:16571594","GO_REF:0000072","GOC:mr"],"gene_count":0,"genotype_count":0,"name":"obsolete carbon dioxide homeostasis (obsolete GO:1903171)","termid":"GO:1903171"}


id: PBO:0030641
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_growth_on_glucose_carbon_source","termid":"PBO:0030641"}


id: PBO:0083650
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Endochitinase; required for cell separation after mitosis; transcriptional activation during the G1 phase of the cell cycle is mediated by transcription factor Ace2p","termid":"PBO:0083650"}


id: FYECO:0000256
data:
  {"annotation_feature_type":"gene","cv_name":"fission_yeast_phenotype_condition","definition":"Experiments were performed in minimal medium where glycerol is the main carbon source, but the medium also contained a small amount of ethanol.","definition_xrefs":["PomBase:al"],"direct_ancestors":[{"relation_name":"is_a","term_name":"grouping defined medium","termid":"FYECO:0000013"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glycerol MM with trace ethanol","termid":"FYECO:0000256"}


id: PBO:0111300
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"U2-associated protein, possibly RNA pol II CTD binding via CID domain","termid":"PBO:0111300"}


id: GO:1902331
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any DNA strand elongation that is involved in bacterial-type DNA replication.","definition_xrefs":["GOC:mtg_cell_cycle","GOC:TermGenie"],"gene_count":0,"genotype_count":0,"name":"obsolete DNA strand elongation involved in bacterial-type DNA replication (obsolete GO:1902331)","termid":"GO:1902331"}


id: GO:0033568
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Combining with lactoferrin and delivering lactoferrin into the cell via endocytosis. Lactoferrin is an iron-binding glycoprotein which binds ferric iron most efficiently at low pH.","definition_xrefs":["PMID:16261254","GOC:bf","GOC:mlg"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cargo receptor activity","termid":"GO:0038024"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0038024"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0038024","GO:0003674"],"is_obsolete":false,"name":"lactoferrin receptor activity","termid":"GO:0033568"}


id: PBO:0075405
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sperm acrosome associated 3","termid":"PBO:0075405"}


id: PBO:0050163
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"high mobility group box 3 pseudogene 19","termid":"PBO:0050163"}


id: PBO:0001704
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nucleolar RNA snR191","termid":"PBO:0001704"}


id: PBO:0002902
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"clr6 L associated factor 1 Laf1","termid":"PBO:0002902"}


id: PBO:0077999
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TNF receptor associated factor 3","termid":"PBO:0077999"}


id: PBO:0028556
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_protein_import_into_nucleus","termid":"PBO:0028556"}


id: GO:0046298
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of 2,4-dichlorobenzoate, a chlorinated aromatic compound which is a key intermediate in the aerobic degradation of polychlorinated biphenyls (PCBs).","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"2,4-dichlorobenzoate metabolic process","termid":"GO:0018898"},{"relation_name":"is_a","term_name":"monocarboxylic acid catabolic process","termid":"GO:0072329"},{"relation_name":"is_a","term_name":"organic cyclic compound catabolic process","termid":"GO:1901361"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044248"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0044248","GO:0044281","GO:0008150"],"is_obsolete":false,"name":"2,4-dichlorobenzoate catabolic process","synonyms":[{"name":"2,4-dichlorobenzoate breakdown","type":"exact"},{"name":"2,4-dichlorobenzoate catabolism","type":"exact"},{"name":"2,4-dichlorobenzoate degradation","type":"exact"}],"termid":"GO:0046298"}


id: PBO:0089102
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"40S ribosomal protein S15a","termid":"PBO:0089102"}


id: FYPO:0006340
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which endocytosis occurs only at the old end of the cell during interphase of the mitotic cell cycle. Normally, endocytosis takes place at the old cell end throughout interphase, and also at the new end after NETO.","definition_xrefs":["PMID:16141239","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal endocytosis during vegetative growth","termid":"FYPO:0000034"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0000138","FYPO:0001985","FYPO:0000002","FYPO:0001320"],"is_obsolete":false,"name":"endocytosis restricted to old cell end","synonyms":[{"name":"endocytosis abolished at new cell end","type":"exact"},{"name":"endocytosis restricted to old cell end during interphase of mitotic cell cycle","type":"exact"},{"name":"endocytosis restricted to old cell end during mitotic interphase","type":"exact"},{"name":"endocytosis restricted to old cell end during vegetative growth","type":"exact"},{"name":"endocytosis restricted to old cell tip","type":"exact"}],"termid":"FYPO:0006340"}


id: GO:0034235
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a glycosylphosphatidylinositol anchor. GPI anchors serve to attach membrane proteins to the lipid bilayer of cell membranes.","definition_xrefs":["GOC:vw"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phosphatidylinositol binding","termid":"GO:0035091"},{"relation_name":"is_a","term_name":"glycolipid binding","termid":"GO:0051861"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0008289"}],"interesting_parent_ids":["GO:0003674","GO:0005488","GO:0008289"],"is_obsolete":false,"name":"GPI anchor binding","synonyms":[{"name":"glycosylphosphatidylinositol binding","type":"exact"}],"termid":"GO:0034235"}


id: PBO:0074333
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a like 1","termid":"PBO:0074333"}


id: PBO:0056380
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MAPK10 antisense RNA 1","termid":"PBO:0056380"}


id: FYPO:0003238
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A vegetative cell population growth phenotype in which cell growth is decreased relative to normal under anaerobic conditions.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased vegetative cell population growth","termid":"FYPO:0001355"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0002058"},{"rel_name":"is_a","termid":"FYPO:0002057"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0002060"},{"rel_name":"is_a","termid":"FYPO:0000003"},{"rel_name":"is_a","termid":"FYPO:0000139"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0000003","FYPO:0002057","FYPO:0001985","FYPO:0002058","FYPO:0002060","FYPO:0000139"],"is_obsolete":false,"name":"decreased anaerobic cell population growth","synonyms":[{"name":"decreased anaerobic vegetative cell population growth","type":"exact"},{"name":"reduced anaerobic cell population growth","type":"exact"}],"termid":"FYPO:0003238"}


id: PBO:0038499
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ATP binding cassette subfamily C member 8","termid":"PBO:0038499"}


id: GO:0046436
data:
  {"annotated_genes":["SJAG_02496"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[110908],"is_not":false,"summary":null,"term":"GO:0046436"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways involving D-alanine, the D-enantiomer of the amino acid alanine, i.e. (2R)-2-aminopropanoic acid.","definition_xrefs":["GOC:ai","GOC:jsg"],"direct_ancestors":[{"relation_name":"is_a","term_name":"alanine metabolic process","termid":"GO:0006522"},{"relation_name":"is_a","term_name":"D-amino acid metabolic process","termid":"GO:0046416"}],"gene_count":1,"genes_by_uniquename":{"SJAG_02496":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006520"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0044281","GO:0006520","GO:0008150"],"is_obsolete":false,"name":"D-alanine metabolic process","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"D-alanine metabolism","type":"exact"}],"termid":"GO:0046436","terms_by_termid":{"GO:0046436":null}}


id: GO:0070154
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process of coupling lysine to lysyl-tRNA in a mitochondrion, catalyzed by lysyl-tRNA synthetase. In tRNA aminoacylation, the amino acid is first activated by linkage to AMP and then transferred to either the 2'- or the 3'-hydroxyl group of the 3'-adenosine residue of the tRNA.","definition_xrefs":["GOC:mcc","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"lysyl-tRNA aminoacylation","termid":"GO:0006430"},{"relation_name":"is_a","term_name":"tRNA aminoacylation for mitochondrial protein translation","termid":"GO:0070127"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006399"},{"rel_name":"part_of","termid":"GO:0140053"},{"rel_name":"is_a","termid":"GO:0006520"}],"interesting_parent_ids":["GO:0006399","GO:0140053","GO:0006520","GO:0008150","GO:0010467"],"is_obsolete":false,"name":"mitochondrial lysyl-tRNA aminoacylation","termid":"GO:0070154"}


id: PBO:0028723
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-protein_mislocalized_to_actomyosin_contractile_ring","termid":"PBO:0028723"}


id: FYPO:0008143
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype in which the amount heme A measured in a cell is too low to detect.","definition_xrefs":["PMID:11248251"],"direct_ancestors":[{"relation_name":"is_a","term_name":"heme absent from cell","termid":"FYPO:0008142"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000002"],"is_obsolete":false,"name":"heme A absent from cell","termid":"FYPO:0008143"}


id: GO:0039598
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The process in which a virus increases the frequency, rate or extent of the breakdown of host messenger RNA (mRNA) initiated by the enzymatic addition of a sequence of adenylyl residues (polyadenylation) at the 3' end the target mRNA.","definition_xrefs":["GOC:sp"],"gene_count":0,"genotype_count":0,"name":"obsolete induction by virus of host nuclear polyadenylation-dependent mRNA catabolic process (obsolete GO:0039598)","synonyms":[{"name":"induction by virus of host nuclear poly(A)-dependent mRNA catabolic process","type":"related"},{"name":"induction by virus of host nuclear polyadenylation-dependent mRNA catabolic process","type":"exact"},{"name":"virus-mediated host mRNA decay by hyperadenylation","type":"narrow"}],"termid":"GO:0039598"}


id: FYPO:0001753
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell population phenotype in which a population of cells grow normally (i.e. indistinguishably from wild type) under anaerobic conditions.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal cell population growth","termid":"FYPO:0000047"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0002057"},{"rel_name":"is_a","termid":"FYPO:0002058"},{"rel_name":"is_a","termid":"FYPO:0000003"},{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0000139"}],"interesting_parent_ids":["FYPO:0000257","FYPO:0000139","FYPO:0000003","FYPO:0002057","FYPO:0002058"],"is_obsolete":false,"name":"normal anaerobic cell population growth","synonyms":[{"name":"normal anaerobic growth","type":"broad"}],"termid":"FYPO:0001753"}


id: PBO:0065580
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protein tyrosine kinase 2","termid":"PBO:0065580"}


id: PBO:0005027
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"signal recognition particle subunit Srp72 (predicted)","termid":"PBO:0005027"}


id: PBO:0055731
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"LIM domain 7","termid":"PBO:0055731"}


id: GO:0000450
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Endonucleolytic cleavage of pre-rRNAs originally produced as a bicistronic rRNA transcript that contains the SSU-rRNA and the LSU-rRNA in that order from 5' to 3' along the primary transcript. Primary ribosomal RNA transcripts with two genes in this order are produced in Archaeal species.","definition_xrefs":["GOC:curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"rRNA processing","termid":"GO:0006364"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0042254"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0010467"},{"rel_name":"part_of","termid":"GO:0044085"}],"interesting_parent_ids":["GO:0042254","GO:0008150","GO:0044085","GO:0010467"],"is_obsolete":false,"name":"cleavage of bicistronic rRNA transcript (SSU-rRNA, LSU-rRNA)","termid":"GO:0000450"}


id: GO:0047309
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 2-oxoglutarate + L-dopa = 3,4-dihydroxyphenylpyruvate + L-glutamate.","definition_xrefs":["EC:2.6.1.49","RHEA:15273"],"direct_ancestors":[{"relation_name":"is_a","term_name":"transaminase activity","termid":"GO:0008483"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016769"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016740"}],"interesting_parent_ids":["GO:0016769","GO:0016740","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"dihydroxyphenylalanine transaminase activity","secondary_identifiers":["KEGG_REACTION:R02077","MetaCyc:2.6.1.49-RXN"],"synonyms":[{"name":"3,4-dihydroxy-L-phenylalanine:2-oxoglutarate aminotransferase activity","type":"related"},{"name":"DOPA aminotransferase activity","type":"related"},{"name":"L-dopa transaminase activity","type":"related"},{"name":"aspartate-DOPP transaminase (ADT)","type":"related"},{"name":"dihydroxyphenylalanine aminotransferase activity","type":"exact"},{"name":"dopa transaminase activity","type":"related"},{"name":"glutamate-DOPP transaminase (GDT)","type":"related"},{"name":"phenylalanine-DOPP transaminase (PDT)","type":"related"}],"termid":"GO:0047309"}


id: MOD:00101
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-lysine residue to L-lysine amide.","definition_xrefs":["PubMed:6579533","RESID:AA0092"],"direct_ancestors":[{"relation_name":"is_a","term_name":"C1-amidated residue","termid":"MOD:00883"},{"relation_name":"is_a","term_name":"modified L-lysine residue","termid":"MOD:00912"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"L-lysine amide","synonyms":[{"name":"(2S)-2,6-diaminohexanamide","type":"exact"},{"name":"L-lysine amide","type":"exact"},{"name":"LysN","type":"exact"},{"name":"MOD_RES Lysine amide","type":"exact"},{"name":"amidated L-lysine","type":"exact"},{"name":"lysinamide","type":"exact"}],"termid":"MOD:00101"}


id: PBO:0085415
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Plasma membrane transporter for both urea and polyamines; expression is highly sensitive to nitrogen catabolite repression and induced by allophanate, the last intermediate of the allantoin degradative pathway","termid":"PBO:0085415"}


id: GO:0046886
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of hormones.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of cellular biosynthetic process","termid":"GO:0031328"},{"relation_name":"is_a","term_name":"positive regulation of hormone metabolic process","termid":"GO:0032352"},{"relation_name":"is_a","term_name":"regulation of hormone biosynthetic process","termid":"GO:0046885"},{"relation_name":"positively_regulates","term_name":"hormone biosynthetic process","termid":"GO:0042446"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of hormone biosynthetic process","synonyms":[{"name":"activation of hormone biosynthetic process","type":"narrow"},{"name":"positive regulation of hormone anabolism","type":"exact"},{"name":"positive regulation of hormone biosynthesis","type":"exact"},{"name":"positive regulation of hormone formation","type":"exact"},{"name":"positive regulation of hormone synthesis","type":"exact"},{"name":"stimulation of hormone biosynthetic process","type":"narrow"},{"name":"up regulation of hormone biosynthetic process","type":"exact"},{"name":"up-regulation of hormone biosynthetic process","type":"exact"},{"name":"upregulation of hormone biosynthetic process","type":"exact"}],"termid":"GO:0046886"}


